PeakID (cmd=annotatePeaks.pl S03_S3_SEACR.relaxed.bed hg38 -annStats S03_S3_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type chrX-30 95142908 95143086 177 - chrX:95142908-95143082 NA NA NA NA NA chrX-29 93497992 93498414 292 - chrX:93498087-93498249 NA NA NA NA NA chrX-28 91463523 91463782 187 - chrX:91463596-91463759 NA NA NA NA NA chrX 9120447 9120627 132 - chrX:9120473-9120557 NA NA NA NA NA chrX-27 87998862 87999147 146 - chrX:87999045-87999052 NA NA NA NA NA chrX-26 84831930 84832121 148 - chrX:84831957-84832062 NA NA NA NA NA chrX-25 84377229 84377501 156 - chrX:84377418-84377458 NA NA NA NA NA chrX-24 84302672 84302886 175 - chrX:84302699-84302843 NA NA NA NA NA chrX-23 79604798 79605104 132 - chrX:79604831-79604905 NA NA NA NA NA chrX-22 78543682 78543899 124 - chrX:78543724-78543789 NA NA NA NA NA chrX-21 76352169 76352389 124 - chrX:76352209-76352237 NA NA NA NA NA chrX-20 76275068 76275355 148 - chrX:76275120-76275187 NA NA NA NA NA chrX-19 70688955 70689208 159 - chrX:70689059-70689124 NA NA NA NA NA chrX-18 70209785 70210277 253 - chrX:70209898-70209996 NA NA NA NA NA chrX-17 68859555 68859761 138 - chrX:68859565-68859635 NA NA NA NA NA chrX-16 64969160 64969350 155 - chrX:64969168-64969218 NA NA NA NA NA chrX-15 64353441 64353602 117 - chrX:64353486-64353559 NA NA NA NA NA chrX-14 64144713 64144948 131 - chrX:64144840-64144889 NA NA NA NA NA chrX-13 54798710 54799044 186 - chrX:54798846-54798884 NA NA NA NA NA chrX-12 53737613 53737818 198 - chrX:53737622-53737813 NA NA NA NA NA chrX-11 48764623 48764892 140 - chrX:48764770-48764781 NA NA NA NA NA chrX-10 47593685 47593880 148 - chrX:47593726-47593815 NA NA NA NA NA chrX-9 46732809 46733264 297 - chrX:46732925-46733075 NA NA NA NA NA chrX-8 46702372 46702643 118 - chrX:46702468-46702471 NA NA NA NA NA chrX-7 46235603 46235994 273 - chrX:46235670-46235723 NA NA NA NA NA chrX-6 37940499 37940697 153 - chrX:37940507-37940693 NA NA NA NA NA chrX-5 36145855 36146138 155 - chrX:36146024-36146051 NA NA NA NA NA chrX-4 35711483 35711727 127 - chrX:35711646-35711656 NA NA NA NA NA chrX-3 33664930 33665134 147 - chrX:33665005-33665095 NA NA NA NA NA chrX-2 21617487 21617695 143 - chrX:21617591-21617669 NA NA NA NA NA chrX-41 153157188 153157367 126 - chrX:153157276-153157349 NA NA NA NA NA chrX-40 151037490 151037703 183 - chrX:151037503-151037676 NA NA NA NA NA chrX-39 140487961 140488216 147 - chrX:140488028-140488067 NA NA NA NA NA chrX-38 136858711 136859018 168 - chrX:136858861-136858912 NA NA NA NA NA chrX-37 134583509 134583779 120 - chrX:134583547-134583617 NA NA NA NA NA chrX-36 127666984 127667300 247 - chrX:127667068-127667246 NA NA NA NA NA chrX-35 122197735 122197859 116 - chrX:122197749-122197853 NA NA NA NA NA chrX-34 117224028 117224300 138 - chrX:117224213-117224217 NA NA NA NA NA chrX-33 115461459 115461804 206 - chrX:115461596-115461663 NA NA NA NA NA chrX-32 103248565 103248757 140 - chrX:103248623-103248711 NA NA NA NA NA chrX-31 101429645 101430066 256 - chrX:101429857-101430042 NA NA NA NA NA chrUn_KI270442v1 26353 26767 223 - chrUn_KI270442v1:26547-26585 NA NA NA NA NA chrUn_KI270438v1 108596 108842 182 - chrUn_KI270438v1:108699-108811 NA NA NA NA NA chr9-92 99801901 99802094 139 - chr9:99801942-99802027 NA NA NA NA NA chr9-91 99686689 99686884 155 - chr9:99686697-99686748 NA NA NA NA NA chr9-90 99632973 99633133 127 - chr9:99633060-99633118 NA NA NA NA NA chr9-89 99246268 99246507 202 - chr9:99246291-99246456 NA NA NA NA NA chr9-88 98612020 98612312 196 - chr9:98612106-98612270 NA NA NA NA NA chr9-87 98471412 98471764 245 - chr9:98471615-98471753 NA NA NA NA NA chr9-86 98260810 98261100 246 - chr9:98260811-98261013 NA NA NA NA NA chr9-85 95550470 95550704 150 - chr9:95550599-95550635 NA NA NA NA NA chr9-5 9505428 9505683 199 - chr9:9505442-9505613 NA NA NA NA NA chr9-84 93852819 93853051 130 - chr9:93852939-93853035 NA NA NA NA NA chr9-83 92915491 92915778 163 - chr9:92915680-92915719 NA NA NA NA NA chr9-82 92693832 92694052 156 - chr9:92693924-92694016 NA NA NA NA NA chr9-81 92396965 92397231 179 - chr9:92397001-92397127 NA NA NA NA NA chr9-80 92238139 92238367 124 - chr9:92238204-92238250 NA NA NA NA NA chr9-79 91459802 91459933 123 - chr9:91459828-91459927 NA NA NA NA NA chr9-78 90463981 90464191 126 - chr9:90464092-90464134 NA NA NA NA NA chr9-77 89417980 89418241 211 - chr9:89418072-89418233 NA NA NA NA NA chr9-76 89314376 89314563 120 - chr9:89314443-89314496 NA NA NA NA NA chr9-75 88762244 88762489 129 - chr9:88762368-88762397 NA NA NA NA NA chr9-74 88663460 88663735 223 - chr9:88663517-88663584 NA NA NA NA NA chr9-73 85032424 85032839 245 - chr9:85032669-85032744 NA NA NA NA NA chr9-4 8411843 8412088 146 - chr9:8411999-8412046 NA NA NA NA NA chr9-72 83082858 83083054 177 - chr9:83082888-83083046 NA NA NA NA NA chr9-71 81183530 81183754 175 - chr9:81183539-81183665 NA NA NA NA NA chr9-70 80077255 80077433 114 - chr9:80077291-80077341 NA NA NA NA NA chr9-69 79349777 79349949 134 - chr9:79349785-79349901 NA NA NA NA NA chr9-68 78974519 78974914 238 - chr9:78974626-78974687 NA NA NA NA NA chr9-3 7841548 7841801 116 - chr9:7841603-7841624 NA NA NA NA NA chr9-67 77810488 77810773 173 - chr9:77810610-77810671 NA NA NA NA NA chr9-66 77523834 77524103 189 - chr9:77523924-77524033 NA NA NA NA NA chr9-65 77031678 77031863 117 - chr9:77031716-77031765 NA NA NA NA NA chr9-64 75165334 75165590 176 - chr9:75165404-75165500 NA NA NA NA NA chr9-63 74330295 74330496 150 - chr9:74330385-74330484 NA NA NA NA NA chr9-62 74272307 74272648 222 - chr9:74272404-74272463 NA NA NA NA NA chr9-61 73116211 73116819 202 - chr9:73116429-73116482 NA NA NA NA NA chr9-60 72079303 72079554 199 - chr9:72079355-72079502 NA NA NA NA NA chr9-59 71049892 71050111 147 - chr9:71049901-71049976 NA NA NA NA NA chr9-58 70511157 70511404 198 - chr9:70511329-70511396 NA NA NA NA NA chr9-57 69665889 69666176 209 - chr9:69666033-69666164 NA NA NA NA NA chr9-56 69658751 69659094 118 - chr9:69658850-69658893 NA NA NA NA NA chr9-55 69528920 69529131 148 - chr9:69528952-69529037 NA NA NA NA NA chr9-54 68955598 68955816 139 - chr9:68955663-68955723 NA NA NA NA NA chr9-53 68952227 68952565 246 - chr9:68952344-68952498 NA NA NA NA NA chr9-52 68834918 68835138 125 - chr9:68834921-68834951 NA NA NA NA NA chr9-51 68832225 68832617 266 - chr9:68832242-68832382 NA NA NA NA NA chr9-50 38659142 38659516 196 - chr9:38659307-38659325 NA NA NA NA NA chr9-49 37458712 37458994 187 - chr9:37458771-37458791 NA NA NA NA NA chr9-48 37300362 37300596 158 - chr9:37300482-37300564 NA NA NA NA NA chr9-47 37175372 37175570 141 - chr9:37175387-37175471 NA NA NA NA NA chr9-46 36975954 36976128 157 - chr9:36976012-36976118 NA NA NA NA NA chr9-45 36904003 36904410 237 - chr9:36904107-36904218 NA NA NA NA NA chr9-44 36782749 36782920 139 - chr9:36782791-36782918 NA NA NA NA NA chr9-43 36741170 36741441 146 - chr9:36741232-36741295 NA NA NA NA NA chr9-42 35936670 35936879 136 - chr9:35936683-35936786 NA NA NA NA NA chr9-41 35782637 35782874 190 - chr9:35782698-35782841 NA NA NA NA NA chr9-40 35724464 35724649 114 - chr9:35724542-35724599 NA NA NA NA NA chr9-39 34892631 34892844 134 - chr9:34892711-34892766 NA NA NA NA NA chr9-38 33465927 33466210 154 - chr9:33466026-33466051 NA NA NA NA NA chr9-37 32827373 32827717 191 - chr9:32827580-32827582 NA NA NA NA NA chr9-36 32535352 32535581 154 - chr9:32535477-32535556 NA NA NA NA NA chr9-35 32032242 32032578 257 - chr9:32032295-32032473 NA NA NA NA NA chr9-34 31914018 31914174 118 - chr9:31914031-31914111 NA NA NA NA NA chr9-33 31837482 31837672 136 - chr9:31837534-31837616 NA NA NA NA NA chr9-32 31447766 31448004 133 - chr9:31447940-31447968 NA NA NA NA NA chr9-2 3104379 3104648 161 - chr9:3104391-3104444 NA NA NA NA NA chr9-31 30920678 30920988 233 - chr9:30920950-30920976 NA NA NA NA NA chr9-30 30772026 30772248 126 - chr9:30772140-30772170 NA NA NA NA NA chr9-29 30620924 30621226 150 - chr9:30620962-30621036 NA NA NA NA NA chr9-28 30185315 30185605 119 - chr9:30185541-30185603 NA NA NA NA NA chr9-27 30047864 30048093 129 - chr9:30047970-30048046 NA NA NA NA NA chr9-26 29578503 29578747 149 - chr9:29578550-29578604 NA NA NA NA NA chr9-25 29030157 29030335 148 - chr9:29030162-29030220 NA NA NA NA NA chr9-24 28930147 28930415 142 - chr9:28930264-28930286 NA NA NA NA NA chr9-23 28902106 28902428 163 - chr9:28902271-28902275 NA NA NA NA NA chr9-22 28795744 28795989 143 - chr9:28795827-28795868 NA NA NA NA NA chr9-21 28528622 28529080 269 - chr9:28528919-28528999 NA NA NA NA NA chr9-20 28278502 28278786 171 - chr9:28278621-28278691 NA NA NA NA NA chr9-19 28125336 28125588 206 - chr9:28125348-28125416 NA NA NA NA NA chr9-18 28105182 28105457 161 - chr9:28105346-28105393 NA NA NA NA NA chr9-17 27919732 27920096 204 - chr9:27919841-27919959 NA NA NA NA NA chr9-16 27499776 27499995 181 - chr9:27499783-27499850 NA NA NA NA NA chr9-15 27142312 27142601 225 - chr9:27142335-27142414 NA NA NA NA NA chr9-14 26747663 26747993 199 - chr9:26747805-26747873 NA NA NA NA NA chr9-13 26165783 26165971 148 - chr9:26165827-26165935 NA NA NA NA NA chr9-12 25143964 25144210 157 - chr9:25144024-25144034 NA NA NA NA NA chr9-11 24415627 24415965 172 - chr9:24415826-24415832 NA NA NA NA NA chr9 2292941 2293307 320 - chr9:2293125-2293307 NA NA NA NA NA chr9-10 20652250 20652446 174 - chr9:20652259-20652367 NA NA NA NA NA chr9-9 18941113 18941388 156 - chr9:18941195-18941232 NA NA NA NA NA chr9-8 18385023 18385240 142 - chr9:18385030-18385147 NA NA NA NA NA chr9-7 16059057 16059335 177 - chr9:16059122-16059198 NA NA NA NA NA chr9-6 15537489 15537783 153 - chr9:15537632-15537644 NA NA NA NA NA chr9-133 137253534 137253747 159 - chr9:137253600-137253705 NA NA NA NA NA chr9-132 136655181 136655444 176 - chr9:136655261-136655350 NA NA NA NA NA chr9-131 134299188 134299389 160 - chr9:134299220-134299321 NA NA NA NA NA chr9-130 133885869 133886122 148 - chr9:133885914-133886027 NA NA NA NA NA chr9-129 132530088 132530498 212 - chr9:132530313-132530381 NA NA NA NA NA chr9-128 132450822 132451171 217 - chr9:132450943-132451116 NA NA NA NA NA chr9-127 131368634 131368876 177 - chr9:131368753-131368829 NA NA NA NA NA chr9-126 130130132 130130385 150 - 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chr10:12002756-12002845 NA NA NA NA NA chr10-211 119821030 119821221 122 - chr10:119821078-119821131 NA NA NA NA NA chr10-210 119762446 119762805 181 - chr10:119762586-119762589 NA NA NA NA NA chr10-209 118227092 118227330 152 - chr10:118227222-118227288 NA NA NA NA NA chr10-208 116328436 116328782 265 - chr10:116328491-116328675 NA NA NA NA NA chr10-207 115956139 115956406 148 - chr10:115956295-115956324 NA NA NA NA NA chr10-206 115571302 115571586 186 - chr10:115571480-115571568 NA NA NA NA NA chr10-205 114274756 114275064 156 - chr10:114274863-114274897 NA NA NA NA NA chr10-204 113687012 113687212 144 - chr10:113687095-113687183 NA NA NA NA NA chr10-203 112552208 112552502 256 - chr10:112552233-112552375 NA NA NA NA NA chr10-202 111842664 111843041 228 - chr10:111842868-111842947 NA NA NA NA NA chr10-201 111179245 111179614 180 - chr10:111179438-111179555 NA NA NA NA NA chr10-200 110299309 110299585 144 - chr10:110299462-110299474 NA NA NA NA NA chr10-199 110071088 110071296 162 - chr10:110071095-110071237 NA NA NA NA NA chr10-198 109913754 109914051 152 - chr10:109913940-109914029 NA NA NA NA NA chr10-197 108211650 108211889 152 - chr10:108211736-108211801 NA NA NA NA NA chr10-196 108210844 108211143 146 - chr10:108210880-108210975 NA NA NA NA NA chr10-195 107474385 107474588 187 - chr10:107474401-107474572 NA NA NA NA NA chr10-194 106757918 106758152 144 - chr10:106757975-106758051 NA NA NA NA NA chr10-193 106284914 106285143 173 - chr10:106284952-106285033 NA NA NA NA NA chr10-192 105995337 105995586 131 - chr10:105995410-105995423 NA NA NA NA NA chr10-191 104391229 104391542 229 - chr10:104391311-104391452 NA NA NA NA NA chr10-190 104178002 104178511 250 - chr10:104178320-104178429 NA NA NA NA NA chr10-189 103712342 103712931 250 - chr10:103712655-103712688 NA NA NA NA NA chr10-188 102990589 102990915 122 - chr10:102990764-102990818 NA NA NA NA NA chr10-187 102327759 102328025 196 - chr10:102327820-102327946 NA NA NA NA NA chr10-186 102011288 102011580 169 - chr10:102011465-102011563 NA NA NA NA NA chr10-16 10196469 10196837 263 - chr10:10196551-10196627 NA NA NA NA NA 906.25 chr17_KI270729v1_random 3454 3669 + 8.25 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 1126.25 chr4 49657462 49657814 + 7.5 NA Intergenic (GAATG)n|Satellite|Satellite 670996 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 972 chr16 46394051 46394597 + 6.25 NA Intergenic Intergenic 174773 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 836.75 chr2 104496021 104496250 + 4.75 NA intron (NR_110113, intron 4 of 5) MamRep137|DNA|TcMar-Tigger 14374 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 379.75-4 chrUn_KI270442v1 92325 92472 + 4.5 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 532.5 chr14 50192889 50193065 + 4.5 NA intron (NM_006939, intron 4 of 22) L3|LINE|CR1 38601 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 478.5 chr14 71985828 71985944 + 4.25 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 52359 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 674.5-2 chr6 67694820 67695009 + 4.25 NA Intergenic Intergenic -360437 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 559 chr2 109378979 109379193 + 4.25 NA intron (NM_001099289, intron 3 of 9) L1MEc|LINE|L1 -65461 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 2726 chr6 70314240 70316040 + 4.25 NA Intergenic Intergenic -12056 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 644.5 chr10 66274619 66274917 + 4 NA intron (NM_001127384, intron 13 of 17) L1M5|LINE|L1 -651268 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 590.5-2 chr8 52331604 52331799 + 4 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -77209 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 372 chr12 90064121 90064290 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 116512 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 937 chrUn_KI270466v1 499 1227 + 4 NA NA SAR|Satellite|Satellite NA NA 646-2 chr4_GL000008v2_random 2740 3132 + 3.75 NA Intergenic Intergenic 175235 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 440 chr11 92773384 92773637 + 3.75 NA intron (NM_001008781, intron 5 of 24) intron (NM_001008781, intron 5 of 24) 142118 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 503.25-2 chr3 124657238 124657546 + 3.75 NA intron (NM_007064, intron 6 of 26) intron (NM_007064, intron 6 of 26) 72733 NM_001323000 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 505 chr5 107386912 107387189 + 3.75 NA intron (NM_001962, intron 4 of 4) intron (NM_001962, intron 4 of 4) 283887 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 270.5-10 chr17 35427743 35427887 + 3.75 NA intron (NM_001289009, intron 1 of 3) intron (NM_001289009, intron 1 of 3) 4685 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 617.5 chrX 98023598 98023801 + 3.75 NA Intergenic Intergenic -459164 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 599.5 chr14 62437795 62438238 + 3.75 NA Intergenic L1M2a|LINE|L1 -298043 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 548.75 chr1 97095987 97096213 + 3.75 NA intron (NR_046590, intron 1 of 4) intron (NR_046590, intron 1 of 4) 177 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 606 chr3 117405665 117405982 + 3.75 NA Intergenic Intergenic 285102 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 639.75 chr8 88713255 88713632 + 3.75 NA Intergenic MER34-int|LTR|ERV1 -385960 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 441.25 chr5 77792623 77792824 + 3.75 NA Intergenic L1MEf|LINE|L1 -16362 NM_001297740 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 286.5-18 chrX 73631809 73631948 + 3.75 NA intron (NM_001300884, intron 3 of 4) L1M3c|LINE|L1 68730 NM_001300884 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 558.25-2 chr10 41859722 41860214 + 3.75 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508077 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 573.25 chr8 106719108 106719361 + 3.75 NA intron (NM_181354, intron 9 of 13) intron (NM_181354, intron 9 of 13) -6873 NM_001198534 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 543.5-2 chr5 150686476 150686773 + 3.75 NA Intergenic L1ME2z|LINE|L1 14438 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 614.5 chr14 84137984 84138291 + 3.75 NA Intergenic Intergenic -1133795 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 589.25 chr2 22957851 22958107 + 3.75 NA Intergenic Intergenic 421500 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 470.25-2 chr8 87472784 87472961 + 3.75 NA Intergenic Intergenic 401143 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 619 chr6 35092071 35092416 + 3.75 NA TTS (NM_015245) TTS (NM_015245) 49096 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 390-6 chr9 20036087 20036245 + 3.75 NA Intergenic Intergenic -249147 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 501-3 chr7 41811258 41811449 + 3.75 NA Intergenic Intergenic -108263 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 483 chr21 22502799 22502963 + 3.5 NA Intergenic Intergenic 404264 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 357-2 chr13 58293919 58294037 + 3.5 NA Intergenic MIR|SINE|MIR -60861 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 314.5-7 chr2 179516237 179516353 + 3.5 NA intron (NR_104234, intron 6 of 12) L1ME1|LINE|L1 46293 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 402.5 chr10 10679884 10680029 + 3.5 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 114958 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 390-2 chr3 6929238 6929458 + 3.5 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -35331 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 408.5-3 chr6 100374595 100374789 + 3.5 NA Intergenic Intergenic 88983 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 510 chr1 32497023 32497214 + 3.5 NA TTS (NM_001145720) TTS (NM_001145720) 32046 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 674.5 chr20 48323982 48324250 + 3.5 NA Intergenic MIR|SINE|MIR -35795 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 533.5-2 chr6 62876582 62876787 + 3.5 NA Intergenic SATR1|Satellite|Satellite 443293 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 591.5 chr8 100723932 100724152 + 3.5 NA Intergenic AluSc|SINE|Alu -1954 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 654.5 chr3 76157355 76157697 + 3.5 NA Intergenic Intergenic -371977 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 349.75-2 chr2 167004113 167004457 + 3.5 NA intron (NM_152381, intron 2 of 10) MIRb|SINE|MIR 115798 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 399.25 chr1 183575846 183576022 + 3.5 NA intron (NM_001127651, intron 4 of 15) intron (NM_001127651, intron 4 of 15) 14670 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 509.75-2 chr7 49945753 49945969 + 3.5 NA intron (NM_001159878, intron 7 of 7) L1M1|LINE|L1 147385 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 512.5 chr1 162600487 162600641 + 3.5 NA TTS (NM_001324114) TTS (NM_001324114) -30299 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 628.25 chr20 60914516 60914889 + 3.5 NA Intergenic L1M4|LINE|L1 -164362 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 355.25-5 chr17 68887492 68887624 + 3.5 NA intron (NM_001288985, intron 24 of 39) intron (NM_001288985, intron 24 of 39) 67834 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 790 chr1 165390859 165391208 + 3.5 NA Intergenic L1ME3Cz|LINE|L1 33951 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 247-37 chrM 11221 11316 + 3.5 NA Intergenic Intergenic -3754 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 438.5-5 chr7 26885586 26885798 + 3.5 NA Intergenic L1M1|LINE|L1 -21102 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 356.5-4 chr5 98868389 98868582 + 3.5 NA intron (NM_001364113, intron 32 of 36) intron (NM_001364113, intron 32 of 36) 58049 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 448.75-3 chr8 123725121 123725273 + 3.5 NA intron (NM_004306, intron 1 of 10) MER113|DNA|hAT-Charlie 12196 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 431-3 chr5 23895564 23895803 + 3.5 NA Intergenic ALR/Alpha|Satellite|centr -55665 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 517.25 chr4 82690569 82690747 + 3.25 NA intron (NM_001037582, intron 2 of 4) intron (NM_001037582, intron 2 of 4) 62772 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 565.25 chr8 20741133 20741410 + 3.25 NA Intergenic L1MA8|LINE|L1 -126345 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 562.5 chr10 44833220 44833567 + 3.25 NA intron (NR_033842, intron 3 of 7) MIR|SINE|MIR -77923 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 607.75 chr14 60438435 60438799 + 3.25 NA intron (NM_174978, intron 17 of 17) intron (NM_174978, intron 17 of 17) 47446 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 632 chr10 70889792 70890132 + 3.25 NA Intergenic L1ME1|LINE|L1 -1397 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 518.5-2 chr5 13361874 13362107 + 3.25 NA Intergenic Intergenic -329104 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 320-9 chr2 172499864 172499981 + 3.25 NA intron (NM_001079818, intron 24 of 24) intron (NM_001079818, intron 24 of 24) -33900 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 423.5-3 chr20 58529398 58529604 + 3.25 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -14102 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 680 chr1 165389454 165389981 + 3.25 NA Intergenic Intergenic -33002 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 211.25-34 chr6 53865216 53865395 + 3.25 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) -64677 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 309.5-18 chr8 108767830 108767962 + 3.25 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 19698 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 679.25 chr14 45542110 45542509 + 3.25 NA Intergenic L1MA3|LINE|L1 173293 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 340.25-6 chr5 26093330 26093536 + 3.25 NA Intergenic Intergenic 902480 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 340.75-9 chr4 72282581 72282758 + 3.25 NA 3' UTR (NM_014243, exon 22 of 22) 3' UTR (NM_014243, exon 22 of 22) 243537 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 487.25 chr1 81745962 81746145 + 3.25 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 46283 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 277.5 chr1 191166095 191166238 + 3.25 NA Intergenic Intergenic 62332 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 384-3 chr4 60879063 60879257 + 3.25 NA Intergenic L1MB7|LINE|L1 -43459 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 533.25-2 chr8 125842833 125843033 + 3.25 NA Intergenic MIR|SINE|MIR 108264 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 321.75-18 chr6 45049329 45049511 + 3.25 NA intron (NM_001350327, intron 2 of 9) MIR3|SINE|MIR 148350 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 587.75 chr9 71515447 71515640 + 3.25 NA Intergenic Intergenic -68572 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 336.25-2 chr12 25284612 25284823 + 3.25 NA Intergenic L1MD3|LINE|L1 -33788 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 414 chr10 73261826 73262191 + 3.25 NA intron (NM_001367801, intron 26 of 27) (TATATATG)n|Simple_repeat|Simple_repeat 9267 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 426.75-3 chr8 88394310 88394552 + 3.25 NA Intergenic Intergenic -66948 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 392.5-9 chr6 144874200 144874389 + 3.25 NA Intergenic Intergenic 468639 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 612.5 chr4 36590827 36591101 + 3.25 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 50936 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 301-2 chr1 68015798 68015948 + 3.25 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 35758 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 662.25 chr14 47999669 47999992 + 3.25 NA Intergenic Intergenic -204816 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 522.5 chr12 98566381 98566692 + 3.25 NA Intergenic Intergenic -27089 NM_005888 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 369-6 chr2 123117610 123117754 + 3.25 NA Intergenic L1PA15|LINE|L1 -44201 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 553.75 chr16 34593262 34593670 + 3.25 NA Intergenic (GATTCCATTC)n|Simple_repeat|Simple_repeat -211986 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 327.75-8 chr4 93549834 93549960 + 3.25 NA intron (NM_001286838, intron 12 of 14) MIR|SINE|MIR -278856 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 410.25-3 chr5 110109919 110110147 + 3.25 NA Intergenic Intergenic 226851 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 259.25-15 chrX 54870150 54870273 + 3.25 NA Intergenic L1MA8|LINE|L1 -50352 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 511.5-2 chr2 17798320 17798628 + 3.25 NA Intergenic Intergenic -17986 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 346.75 chr1 34558912 34559113 + 3.25 NA Intergenic Intergenic 110682 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 371.5-7 chr4 41225550 41225729 + 3.25 NA intron (NR_102709, intron 1 of 2) intron (NR_102709, intron 1 of 2) -11097 NM_001166050 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 389-6 chr6 156818648 156818888 + 3.25 NA intron (NM_020732, intron 1 of 19) MER117|DNA|hAT-Charlie -39037 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 492.25-2 chr6 24425484 24425848 + 3.25 NA TTS (NM_001503) TTS (NM_001503) 22730 NM_020662 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L magnesium transporter MRS2 protein-coding 343.5-3 chr2 119499951 119500179 + 3.25 NA intron (NM_002980, intron 1 of 12) L1MA4|LINE|L1 23611 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 463.25-5 chr7 38980344 38980574 + 3.25 NA non-coding (NR_138047, exon 7 of 7) non-coding (NR_138047, exon 7 of 7) 2550 NM_001166018 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 387.25-9 chr8 76323492 76323684 + 3.25 NA Intergenic Intergenic -83066 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 335.5-10 chr3 174899609 174899715 + 3.25 NA intron (NM_207015, intron 1 of 13) MSTA|LTR|ERVL-MaLR 40328 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 331.25-9 chr6 34712392 34712588 + 3.25 NA Intergenic L1M5|LINE|L1 15545 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 395.5-4 chr8 91653430 91653608 + 3.25 NA Intergenic Intergenic 364161 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 472 chr6 78580663 78580839 + 3.25 NA Intergenic Intergenic -41442 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 206.25-42 chrX 54373247 54373369 + 3.25 NA Intergenic Intergenic -15262 NM_001002838 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 408-4 chr8 84337566 84337778 + 3.25 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -77812 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 821 chrUn_KI270438v1 104375 105039 + 3.25 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 560.5 chr2 71110689 71110920 + 3.25 NA intron (NM_032601, intron 2 of 2) intron (NM_032601, intron 2 of 2) 19425 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 319.75 chr14 52379173 52379322 + 3.25 NA Intergenic Intergenic 64935 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 405.75-2 chr11 81658024 81658170 + 3.25 NA Intergenic L1PA17|LINE|L1 232739 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 455-2 chr2 125578650 125579070 + 3.25 NA Intergenic Intergenic 539125 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 433.5 chr11 22494979 22495162 + 3.25 NA Intergenic MIR|SINE|MIR -3051 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 289-15 chr7 15231607 15231700 + 3.25 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -256795 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 636.5 chr8 85660062 85660561 + 3 NA Intergenic L1P1|LINE|L1 2202 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 405-6 chr3 5212910 5213170 + 3 NA intron (NM_014674, intron 10 of 11) MER5B|DNA|hAT-Charlie 25333 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 340.5-10 chr7 104798583 104798706 + 3 NA TTS (NR_034142) TTS (NR_034142) 5448 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 538.5 chr6 106937990 106938251 + 3 NA Intergenic Intergenic 35919 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 451.5 chr2 167169581 167169739 + 3 NA intron (NM_152381, intron 3 of 10) intron (NM_152381, intron 3 of 10) -17712 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 371.75-2 chr22 35317364 35317603 + 3 NA intron (NR_156428, intron 1 of 13) AluSq2|SINE|Alu 17589 NM_005488 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 310-6 chr12 11671376 11671539 + 3 NA intron (NM_001987, intron 1 of 7) L1MA4|LINE|L1 21603 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 470.5 chr11 35021289 35021580 + 3 NA Intergenic Intergenic 79597 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 350.5-6 chr5 109880101 109880289 + 3 NA Intergenic Intergenic -2987 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 461.5-2 chr2 214752934 214753340 + 3 NA intron (NM_001282548, intron 1 of 5) MIR3|SINE|MIR 56546 NR_104212 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 290-9 chr2 152934407 152934525 + 3 NA Intergenic L1ME3A|LINE|L1 215829 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 344.75-6 chr5 71783529 71783753 + 3 NA Intergenic Intergenic 64366 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 326-17 chr8 123847219 123847365 + 3 NA Intergenic L1MCa|LINE|L1 -4695 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 390-5 chr7 50553196 50553418 + 3 NA intron (NM_001082971, intron 1 of 14) MamRep564|Unknown|Unknown 7764 NM_001242886 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 310-10 chr17 55626740 55626945 + 3 NA Intergenic MIRb|SINE|MIR 96022 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 367.5-4 chr17 9045802 9045962 + 3 NA intron (NM_004822, intron 2 of 6) L1M4|LINE|L1 24372 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 MRMV4|NTN1L netrin 1 protein-coding 408.75 chr2 44570507 44570672 + 3 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 208642 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 553 chr1 198014897 198015344 + 3 NA Intergenic Intergenic 97748 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 328.5-16 chr5 127958120 127958334 + 3 NA intron (NR_152813, intron 2 of 3) intron (NR_152813, intron 2 of 3) 124948 NR_152801 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 456.5-2 chr4 34103358 34103649 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -63610 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 428.5 chr2 172017400 172017783 + 3 NA intron (NM_001322279, intron 1 of 9) intron (NM_001322279, intron 1 of 9) 17638 NM_001322279 254042 Hs.298250 NM_199227 ENSG00000172878 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D, mitochondrial protein-coding 297-17 chr3 130356945 130357073 + 3 NA intron (NM_001278298, intron 1 of 40) L1M5|LINE|L1 11493 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 314.75-8 chr4 65309571 65309729 + 3 NA Intergenic L2a|LINE|L2 -305150 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 415.5 chr10 94952444 94952721 + 3 NA intron (NM_000771, intron 5 of 8) L1MB5|LINE|L1 13924 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 352.75-2 chr17 70036215 70036340 + 3 NA Intergenic Intergenic -14994 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 393.25-3 chr8 49385553 49385825 + 3 NA Intergenic Intergenic 126491 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 382.5-3 chr11 36579796 36579976 + 3 NA TTS (NM_000448) TTS (NM_000448) 11873 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 541.5 chr20 19483124 19483364 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -198648 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 393-4 chr18 32190939 32191118 + 3 NA intron (NM_005925, intron 1 of 14) MIRc|SINE|MIR 989 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 504.25 chr14 73972490 73972813 + 3 NA intron (NM_001249, intron 13 of 15) L1MA10|LINE|L1 22349 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 279-19 chr5 102388624 102388903 + 3 NA exon (NM_001308014, exon 7 of 9) exon (NM_001308014, exon 7 of 9) -92479 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 347.75-3 chr15 70873296 70873507 + 3 NA intron (NM_001284357, intron 2 of 16) intron (NM_001284357, intron 2 of 16) 19032 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 645 chr7 96587464 96587793 + 3 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 76710 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 523 chr15 94683789 94684128 + 3 NA Intergenic Intergenic -171405 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 281.25-9 chr4 60149644 60149925 + 3 NA Intergenic Intergenic -772835 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 264.75-18 chr4 66177256 66177374 + 3 NA Intergenic Intergenic -99509 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 470.75-2 chr4 65849632 65849945 + 3 NA Intergenic Intergenic -179293 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 464.25-2 chr5 144681469 144682021 + 3 NA Intergenic L2a|LINE|L2 476354 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 263.5-13 chr2 35731066 35731187 + 3 NA Intergenic Intergenic 259721 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 401-4 chr2 135764253 135764483 + 3 NA intron (NM_014607, intron 6 of 12) L4_C_Mam|LINE|RTE-X -21724 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 476.5-2 chr22 27534603 27534812 + 3 NA Intergenic AluJo|SINE|Alu 224056 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 694.5 chr3 121126127 121126654 + 3 NA intron (NR_145517, intron 7 of 8) intron (NR_145517, intron 7 of 8) 76750 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 354-10 chr5 56525061 56525289 + 3 NA intron (NR_161255, intron 4 of 5) intron (NR_161255, intron 4 of 5) -43406 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 425.75-4 chr5 108091043 108091266 + 3 NA intron (NM_001163315, intron 6 of 8) Charlie15b|DNA|hAT-Charlie 290944 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 511 chr11 4690202 4690404 + 3 NA intron (NM_030774, intron 1 of 1) MIR|SINE|MIR 7550 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 430 chr16 73814878 73815165 + 3 NA Intergenic Intergenic 400500 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 472.5 chr11 50531205 50531426 + 3 NA Intergenic ALR/Alpha|Satellite|centr 122168 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 463.5-2 chr4 112300232 112300520 + 3 NA intron (NM_001102406, intron 1 of 15) intron (NM_001102406, intron 1 of 15) 3007 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 281-11 chr2 112119557 112119686 + 3 NA TTS (NM_032824) TTS (NM_032824) -18764 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 552.25-2 chr12 13114443 13114694 + 3 NA Intergenic Intergenic -10901 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 483.5-2 chr14 48708679 48708856 + 3 NA Intergenic Intergenic 877613 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 342.5-7 chr5 11819018 11819199 + 3 NA intron (NM_001288717, intron 1 of 20) L2c|LINE|L2 85338 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 534 chr20 47068186 47068367 + 3 NA intron (NM_172110, intron 5 of 13) (GAAT)n|Simple_repeat|Simple_repeat -98691 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 309.25-3 chr13 83211351 83211536 + 3 NA Intergenic L1PREC2|LINE|L1 670950 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 631 chr6 55763607 55764010 + 3 NA intron (NM_001329754, intron 4 of 5) intron (NM_001329754, intron 4 of 5) 111782 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 338.5-4 chr14 82110491 82110803 + 3 NA Intergenic LTR67B|LTR|ERVL -367509 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 445.5-3 chr8 135364235 135364390 + 3 NA Intergenic MIRb|SINE|MIR -93144 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 364.5-2 chr18 4145912 4146086 + 3 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) -118603 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 497.75-2 chr5 85634410 85634680 + 3 NA Intergenic L1MC4|LINE|L1 -647899 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 436.5 chr16 73175965 73176433 + 3 NA Intergenic Intergenic -31752 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 509.75 chr12 127474079 127474248 + 3 NA Intergenic Intergenic -134091 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 360-2 chr11 103454994 103455177 + 3 NA intron (NM_001377, intron 85 of 88) intron (NM_001377, intron 85 of 88) 345659 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 490.5 chr2 124023135 124023385 + 3 NA intron (NR_147976, intron 1 of 2) L1ME3Cz|LINE|L1 1914 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 390.5 chr1 45838794 45838939 + 3 NA intron (NM_001324320, intron 3 of 29) L1M5|LINE|L1 -25482 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 486-2 chr7 62663638 62663911 + 3 NA Intergenic ALR/Alpha|Satellite|centr 640282 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 390-3 chr4 177178810 177179010 + 3 NA Intergenic L2a|LINE|L2 -130964 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 593.25 chr10 47250941 47251291 + 3 NA Intergenic L1MB5|LINE|L1 -49081 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 405.25-3 chr4 81867500 81867712 + 3 NA Intergenic L3b|LINE|CR1 -395699 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 460-5 chr4 157751875 157752046 + 3 NA Intergenic Intergenic 179470 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 507.75-2 chr4 83847707 83848343 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie 311917 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 417 chr12 1415553 1415824 + 3 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -84803 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 297.75-3 chr1 216280925 216281111 + 3 NA intron (NM_206933, intron 11 of 71) intron (NM_206933, intron 11 of 71) 142378 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 187.5-31 chr18 33052949 33053042 + 3 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -279972 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 375 chr1 42528217 42528399 + 3 NA intron (NM_001355227, intron 6 of 18) intron (NM_001355227, intron 6 of 18) -4712 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 494.25-2 chr19 28958509 28958944 + 3 NA Intergenic L1MC5|LINE|L1 -6405 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 230-4 chr10 118972327 118972445 + 3 NA Intergenic HAL1|LINE|L1 -57328 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 567.75 chr6 50447432 50447798 + 3 NA Intergenic Intergenic -265929 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 508.75-3 chr2 189026250 189026447 + 3 NA Intergenic L1ME3G|LINE|L1 30718 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 327.5-5 chr2 76381844 76382026 + 3 NA Intergenic Intergenic -604030 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 409-2 chr14 26188523 26188715 + 3 NA Intergenic MIR|SINE|MIR 364811 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 441-5 chr6 129781668 129781936 + 3 NA Intergenic Intergenic -71625 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 267-10 chr16 49187560 49187653 + 3 NA Intergenic L1MA9|LINE|L1 94232 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 424-2 chr21 21905679 21906027 + 3 NA Intergenic Intergenic 158868 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 494-2 chr8 113199934 113200459 + 3 NA intron (NM_001363185, intron 3 of 66) L2b|LINE|L2 176956 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 641.75 chr3 118369042 118369288 + 3 NA Intergenic L1M4b|LINE|L1 -272603 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 271.5-25 chr9 28235715 28235830 + 3 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 483533 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 365.5 chr1 167393005 167393220 + 3 NA intron (NM_001198783, intron 9 of 15) intron (NM_001198783, intron 9 of 15) 64042 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 405.5-6 chr7 106513628 106513881 + 3 NA Intergenic MIRb|SINE|MIR 147404 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 715.75 chr12 61038377 61038846 + 3 NA Intergenic Intergenic 1154228 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 410.75-3 chr8 78504980 78505235 + 3 NA Intergenic L1MC4a|LINE|L1 -11233 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 344.25-9 chr9 103574563 103574892 + 3 NA Intergenic L1MA4|LINE|L1 -249694 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 533.75 chr1 67125586 67125917 + 3 NA intron (NM_001276352, intron 4 of 8) intron (NM_001276352, intron 4 of 8) 9219 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 304-6 chr4 90992339 90992521 + 3 NA intron (NM_001145065, intron 9 of 10) MLT1E1A|LTR|ERVL-MaLR 757399 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 251.25-12 chr17 39777221 39777395 + 3 NA intron (NM_001257413, intron 3 of 3) intron (NM_001257413, intron 3 of 3) 917 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 461-2 chr2 186218637 186218853 + 3 NA Intergenic Intergenic -132428 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 449-2 chr14 42580200 42580531 + 3 NA Intergenic Intergenic 973509 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 562.5-2 chr8 63290396 63290597 + 3 NA Intergenic Intergenic 121493 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 345.25-2 chr14 71688119 71688298 + 3 NA intron (NM_001354286, intron 14 of 24) Tigger4a|DNA|TcMar-Tigger 101910 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 475.75 chr22 27665202 27665420 + 2.75 NA Intergenic Intergenic 136445 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 253.75-17 chr6 148508544 148508644 + 2.75 NA promoter-TSS (NM_001346508) promoter-TSS (NM_001346508) 95 NM_001346507 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 412.25-2 chr6 53194114 53194302 + 2.75 NA Intergenic Intergenic -45367 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 295.25-15 chr6 67384324 67384489 + 2.75 NA Intergenic Intergenic -670945 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 258.75-10 chr13 91198724 91198905 + 2.75 NA intron (NR_047004, intron 1 of 3) intron (NR_047004, intron 1 of 3) 12884 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 587.75-2 chrX 96430699 96430956 + 2.75 NA Intergenic Intergenic -92925 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 329.5-8 chr3 160852326 160852464 + 2.75 NA intron (NM_001317911, intron 1 of 3) intron (NM_001317911, intron 1 of 3) 10246 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 460-3 chr2 122726759 122727079 + 2.75 NA Intergenic MER21C|LTR|ERVL 346562 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 247.75-27 chr8 122925225 122925372 + 2.75 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 100474 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 352-3 chr16 61129371 61129573 + 2.75 NA Intergenic L1MC1|LINE|L1 -73706 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 251.75-3 chr1 116809496 116809635 + 2.75 NA Intergenic Intergenic 55135 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 308-8 chr21 37369512 37369638 + 2.75 NA intron (NM_001347723, intron 1 of 10) intron (NM_001347723, intron 1 of 10) 2018 NM_101395 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 356.5-6 chr6 75510176 75510350 + 2.75 NA Intergenic L2c|LINE|L2 -16463 NM_001289987 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 229.5-55 chr8 141244342 141244467 + 2.75 NA intron (NM_001286646, intron 1 of 7) L2c|LINE|L2 -10163 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 320-2 chr10 44642745 44642960 + 2.75 NA Intergenic Intergenic -257755 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 582.25 chr4 30350719 30351086 + 2.75 NA Intergenic Intergenic -369467 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 206-5 chr10 68239768 68239849 + 2.75 NA Intergenic Intergenic -7695 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 433-2 chr8 49932234 49932429 + 2.75 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 20924 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 569.5 chr1 207965501 207965938 + 2.75 NA Intergenic Intergenic -54594 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 455.75-2 chr8 79502900 79503274 + 2.75 NA Intergenic Intergenic -108030 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 374.5-2 chr11 97170417 97170778 + 2.75 NA Intergenic Intergenic 662172 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 438.5-3 chr17 61138535 61138839 + 2.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 229017 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 335.25-4 chr12 18156652 18156830 + 2.75 NA Intergenic L1MEf|LINE|L1 -66548 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 399.5-3 chr8 87715565 87715837 + 2.75 NA Intergenic Intergenic 158314 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 233.25-26 chr5 17484370 17484464 + 2.75 NA TTS (NR_134270) TTS (NR_134270) 40407 NR_134270 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 370.5-7 chr8 38488375 38488589 + 2.75 NA Intergenic Intergenic -19648 NM_001354367 2260 Hs.264887 NM_015850 ENSG00000077782 FGFR1 BFGFR|CD331|CEK|ECCL|FGFBR|FGFR-1|FLG|FLT-2|FLT2|HBGFR|HH2|HRTFDS|KAL2|N-SAM|OGD|bFGF-R-1 fibroblast growth factor receptor 1 protein-coding 451.75-4 chr7 52673184 52673486 + 2.75 NA Intergenic L1MB5|LINE|L1 -362298 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 321.5-7 chr3 61579868 61580090 + 2.75 NA intron (NM_002841, intron 1 of 29) Tigger2b_Pri|DNA|TcMar-Tigger 18408 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 494.5 chr12 853158 853419 + 2.75 NA intron (NM_001184985, intron 4 of 27) intron (NM_001184985, intron 4 of 27) 79788 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 590.5 chr2 116546254 116546647 + 2.75 NA Intergenic Intergenic 1202635 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 318.75-5 chr17 59227499 59227615 + 2.75 NA intron (NM_182569, intron 1 of 9) intron (NM_182569, intron 1 of 9) 7046 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 198.75-33 chr4 71747149 71747325 + 2.75 NA intron (NM_000583, intron 11 of 12) L2c|LINE|L2 36842 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 284-21 chr8 108776912 108777073 + 2.75 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 10602 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 551.5-2 chrUn_KI270467v1 3061 3624 + 2.75 NA NA SAR|Satellite|Satellite NA NA 508.75-4 chr8 88886264 88886565 + 2.75 NA Intergenic MER1B|DNA|hAT-Charlie -558931 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 392.5 chr1 41907743 41907971 + 2.75 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 11065 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 360.25-5 chr9 26788155 26788329 + 2.75 NA Intergenic Intergenic 104560 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 395.25 chr1 173172680 173172964 + 2.75 NA Intergenic THE1C|LTR|ERVL-MaLR 32710 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 308.5-8 chr2 54462304 54462529 + 2.75 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 6089 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 508.5-2 chr7 47827353 47827805 + 2.75 NA intron (NM_138295, intron 44 of 56) intron (NM_138295, intron 44 of 56) 32288 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 293.5-6 chr15 80546029 80546204 + 2.75 NA intron (NM_014862, intron 8 of 18) intron (NM_014862, intron 8 of 18) 16828 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 272.25-3 chr1 89591561 89591671 + 2.75 NA intron (NM_015350, intron 8 of 8) intron (NM_015350, intron 8 of 8) 41278 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 484.5 chr16 27073854 27074154 + 2.75 NA Intergenic Intergenic 7077 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 471 chr11 76406475 76406807 + 2.75 NA 3' UTR (NM_001282456, exon 2 of 2) 3' UTR (NM_001282456, exon 2 of 2) 25318 NM_001305225 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 620.5 chr18 2775219 2775811 + 2.75 NA intron (NM_015295, intron 41 of 47) intron (NM_015295, intron 41 of 47) -71491 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 438-2 chr12 130188950 130189253 + 2.75 NA Intergenic L1ME3G|LINE|L1 26642 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 228.25-21 chr20 55664929 55665118 + 2.75 NA Intergenic Intergenic -237826 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 271-11 chr2 21806998 21807170 + 2.75 NA Intergenic Intergenic -96432 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 297-23 chr7 38272367 38272576 + 2.75 NA intron (NM_001003799, intron 1 of 3) L1ME4a|LINE|L1 1176 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 394.75 chr10 53810078 53810278 + 2.75 NA intron (NM_001354411, intron 34 of 34) intron (NM_001354411, intron 34 of 34) -676052 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 445.25 chr1 118710275 118710735 + 2.75 NA Intergenic Intergenic 277838 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 305.75-3 chr13 38928933 38929079 + 2.75 NA Intergenic Intergenic 61825 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 554 chr9 83960989 83961313 + 2.75 NA Intergenic AluJb|SINE|Alu -4165 NM_001317997 84267 Hs.208914 NM_032307 ENSG00000165118 C9orf64 - chromosome 9 open reading frame 64 protein-coding 607.25 chr2 173796917 173797244 + 2.75 NA Intergenic Intergenic 166800 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 428.5-6 chrX 38030324 38030577 + 2.75 NA intron (NM_138780, intron 1 of 16) MER41-int|LTR|ERV1 -3084 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 358.5-7 chr4 30447163 30447428 + 2.75 NA Intergenic L1ME3A|LINE|L1 -273074 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 614.25 chr20 24859390 24859820 + 2.75 NA Intergenic L3|LINE|CR1 -89664 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 407.5-3 chr5 44850417 44850640 + 2.75 NA Intergenic Intergenic 41581 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 334.75-6 chr8 126076795 126076951 + 2.75 NA Intergenic MIRb|SINE|MIR -125676 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 375-5 chr4 15584615 15584897 + 2.75 NA intron (NM_001080522, intron 31 of 37) L1MA6|LINE|L1 70601 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 492 chr8 140462195 140462500 + 2.75 NA Intergenic AluJr|SINE|Alu -3768 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 529.25 chr2 209548243 209548643 + 2.75 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -30893 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 463.25-3 chr5 85037221 85037531 + 2.75 NA Intergenic Intergenic -652496 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 323.5-7 chr2 173272014 173272188 + 2.75 NA intron (NR_033882, intron 1 of 7) L2c|LINE|L2 9935 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 532 chr10 25939568 25939828 + 2.75 NA intron (NM_001368265, intron 2 of 7) intron (NM_001368265, intron 2 of 7) 5469 NM_001368265 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 331.75-6 chr4 73468131 73468329 + 2.75 NA Intergenic L1MC5a|LINE|L1 -13515 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 355-9 chr7 54738645 54738851 + 2.75 NA Intergenic Intergenic 20463 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 369.75-10 chr5 118168480 118168672 + 2.75 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -113998 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 441.5-2 chr2 163044242 163044458 + 2.75 NA Intergenic Intergenic -205583 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 580.25-2 chr5 81884062 81884483 + 2.75 NA Intergenic Intergenic -87751 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 435-2 chr3 160905296 160905547 + 2.75 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 34823 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 283-6 chr14 48545152 48545292 + 2.75 NA Intergenic L1PA15|LINE|L1 -750208 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 418.25-2 chr4 82500590 82501024 + 2.75 NA intron (NM_001080506, intron 5 of 7) intron (NM_001080506, intron 5 of 7) 61181 NM_001353455 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 513.25 chr8 127510425 127510745 + 2.75 NA Intergenic (TTTGTA)n|Simple_repeat|Simple_repeat -28446 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 217.25-27 chr6 161957944 161958123 + 2.75 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 487056 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 377-2 chr5 59511324 59511563 + 2.75 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 75055 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 516.75 chr1 185651355 185651828 + 2.75 NA Intergenic MIR|SINE|MIR -23103 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 501.25 chr12 62430781 62431065 + 2.75 NA Intergenic L1M3|LINE|L1 -35903 NM_001278469 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 568.75 chr9 133961389 133961717 + 2.75 NA intron (NM_001134398, intron 1 of 29) intron (NM_001134398, intron 1 of 29) 30771 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 405.25 chr11 106777971 106778253 + 2.75 NA intron (NM_001256424, intron 5 of 8) intron (NM_001256424, intron 5 of 8) 240364 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 410.75-2 chr2 164820035 164820328 + 2.75 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -20568 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 284-25 chr9 128869489 128869668 + 2.75 NA intron (NM_001352997, intron 1 of 13) L1MB5|LINE|L1 -9046 NR_148225 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 305.5-6 chr15 86552519 86552880 + 2.75 NA intron (NM_152336, intron 20 of 24) L2a|LINE|L2 -235731 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 379.5-2 chr11 105138476 105138668 + 2.75 NA intron (NM_021571, intron 2 of 2) intron (NM_021571, intron 2 of 2) 1197 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 371.5-5 chr17 61260273 61260424 + 2.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 107356 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 378.75 chr21 35097130 35097346 + 2.75 NA Intergenic Intergenic -47940 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 255.5-29 chr8 102489933 102490058 + 2.75 NA Intergenic AluY|SINE|Alu -61594 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 325-2 chr12 71784010 71784182 + 2.75 NA intron (NM_014999, intron 6 of 6) Charlie7a|DNA|hAT-Charlie 29233 NM_014999 23011 Hs.524590 NM_014999 ENSG00000080371 RAB21 - RAB21, member RAS oncogene family protein-coding 315.75-5 chr21 27505031 27505273 + 2.75 NA Intergenic FLAM_A|SINE|Alu -217227 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 293.5-22 chr8 121539449 121539622 + 2.75 NA Intergenic MSTB|LTR|ERVL-MaLR -99811 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 392.75-6 chr8 130498104 130498369 + 2.75 NA Intergenic Intergenic -54562 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 275.5-10 chr14 88391412 88391576 + 2.75 NA intron (NM_001040428, intron 2 of 10) intron (NM_001040428, intron 2 of 10) 5837 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 366.75 chr11 47889756 47889969 + 2.75 NA Intergenic L2b|LINE|L2 -41318 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 444.75 chr5 20962684 20962896 + 2.75 NA Intergenic Intergenic -347255 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 528 chr3 193584657 193585024 + 2.75 NA Intergenic L1ME2|LINE|L1 -8304 NM_130833 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1 mitochondrial dynamin like GTPase protein-coding 367.25-2 chr10 86915759 86916017 + 2.75 NA intron (NM_004329, intron 8 of 12) intron (NM_004329, intron 8 of 12) -39871 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 459.5-2 chr8 130272466 130272674 + 2.75 NA intron (NM_001362925, intron 3 of 29) L1MA4A|LINE|L1 23963 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 359.75-2 chr1 68584844 68585067 + 2.75 NA Intergenic Intergenic -87873 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 393.25-4 chr8 104759955 104760231 + 2.75 NA Intergenic Intergenic -171069 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 326-19 chr9 84276161 84276316 + 2.75 NA non-coding (NR_037638, exon 19 of 19) non-coding (NR_037638, exon 19 of 19) 64520 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 274.75-18 chr6 167234075 167234218 + 2.75 NA intron (NR_157263, intron 3 of 3) LTR37A|LTR|ERV1 5846 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 384.5-2 chr4 178459429 178459579 + 2.75 NA Intergenic MER5A|DNA|hAT-Charlie -551568 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 510.5 chr12 47690171 47690485 + 2.75 NA intron (NM_024604, intron 6 of 16) MIRb|SINE|MIR 15702 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 300.25-10 chr20 40572404 40572517 + 2.75 NA Intergenic Intergenic 116776 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 447.5-5 chr9 131292841 131293144 + 2.75 NA intron (NM_032728, intron 1 of 1) MIRb|SINE|MIR 3269 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 235.25-28 chr6 120801167 120801321 + 2.75 NA Intergenic Intergenic 533236 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 247.5-22 chr3 83628145 83628502 + 2.75 NA Intergenic Intergenic 1241252 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 560 chr21 26971940 26972304 + 2.75 NA Intergenic Intergenic -5034 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 478.25 chr4 156276920 156277228 + 2.75 NA Intergenic L1ME3A|LINE|L1 -323208 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 508.25 chr12 25890702 25890972 + 2.75 NA Intergenic MER6|DNA|TcMar-Tigger -16758 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 227.75-15 chr21 32110114 32110229 + 2.75 NA Intergenic L1MD|LINE|L1 -23876 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 530.5 chr20 15869717 15869971 + 2.75 NA intron (NM_001351663, intron 9 of 17) intron (NM_001351663, intron 9 of 17) 53470 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 350.5-2 chr10 65557513 65557718 + 2.75 NA Intergenic MER102c|DNA|hAT-Charlie -13810 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 390.25-2 chr2 18778820 18779025 + 2.75 NA Intergenic Intergenic -189342 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 447.5 chr15 70391809 70392098 + 2.75 NA Intergenic L1ME4b|LINE|L1 113975 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 451.75 chr12 25051489 25051793 + 2.75 NA promoter-TSS (NM_001366540) promoter-TSS (NM_001366540) -587 NR_159366 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 485 chr15 55598016 55598275 + 2.75 NA Intergenic L2c|LINE|L2 -9174 NM_015617 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 431.25 chr3 88807052 88807350 + 2.75 NA Intergenic Intergenic -300420 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 489.5-2 chr8 119273366 119273816 + 2.75 NA Intergenic L1MC1|LINE|L1 -26734 NR_149114 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 273.25-9 chr21 27787140 27787282 + 2.75 NA Intergenic Intergenic 64832 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 384.25-4 chr5 26729601 26729818 + 2.75 NA Intergenic L1PA16|LINE|L1 308877 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 244.5-4 chr10 43576754 43576901 + 2.75 NA Intergenic L2|LINE|L2 -2209 NM_001099284 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 440.5 chr11 88652218 88652448 + 2.75 NA intron (NM_001143831, intron 3 of 8) intron (NM_001143831, intron 3 of 8) 147757 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 384 chr12 13063132 13063395 + 2.75 NA intron (NM_020853, intron 5 of 12) MIRb|SINE|MIR 18882 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 360.75-2 chr16 2350382 2350720 + 2.75 NA intron (NR_003574, intron 1 of 16) L1MD|LINE|L1 9629 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 466.25-2 chr8 126188474 126188714 + 2.75 NA Intergenic L3|LINE|CR1 -136901 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 341.5-4 chr3 152381525 152381777 + 2.75 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) -40661 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 429-4 chr15 100527346 100527750 + 2.75 NA intron (NM_001290341, intron 2 of 13) intron (NM_001290341, intron 2 of 13) 16738 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 514.25-3 chr4 59396236 59396487 + 2.75 NA Intergenic Intergenic 382788 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 389.5-5 chr7 55105457 55105648 + 2.75 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -4287 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 215.75-22 chr5 58022469 58022550 + 2.75 NA Intergenic Intergenic 99832 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 288-19 chr8 136075897 136076099 + 2.75 NA Intergenic Intergenic -454800 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 362-3 chr3 51444995 51445154 + 2.75 NA intron (NR_146065, intron 5 of 25) L1ME3D|LINE|L1 53789 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 263-24 chr6 123810836 123810950 + 2.75 NA intron (NM_001040214, intron 1 of 6) MER5A|DNA|hAT-Charlie 7028 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 322.25-8 chr2 39057407 39057548 + 2.75 NA intron (NM_005633, intron 3 of 22) intron (NM_005633, intron 3 of 22) 62986 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 371.75 chr16 81302590 81302771 + 2.75 NA Intergenic Intergenic -12286 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 477.5-2 chr6 130960053 130960265 + 2.75 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 10324 NM_001350306 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 550.75 chr18 39741009 39741263 + 2.75 NA intron (NR_024391, intron 2 of 3) MIR3|SINE|MIR 10859 NR_024391 647946 Hs.649350 NR_024391 ENSG00000267374 MIR924HG LINC00669 MIR924 host gene ncRNA 253-9 chr15 62970324 62970451 + 2.75 NA Intergenic Tigger4b|DNA|TcMar-Tigger -72360 NM_001365776 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 313.5-12 chr3 129703490 129703713 + 2.75 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -14869 NM_001349272 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 229.25-13 chr2 194661838 194661967 + 2.75 NA Intergenic Intergenic -68693 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 233-3 chr1 64429883 64430046 + 2.75 NA Intergenic Intergenic -40165 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 310.25 chr1 74817046 74817163 + 2.75 NA Intergenic L1MEd|LINE|L1 -83696 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 350.25-11 chr5 7565357 7565529 + 2.75 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 169305 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 314.75-5 chr2 104289541 104289787 + 2.75 NA Intergenic Intergenic 118668 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 373.75-2 chr20 41974834 41975091 + 2.75 NA Intergenic Intergenic -356585 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 366.75-6 chr5 120894540 120894713 + 2.75 NA Intergenic Intergenic 363162 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 357.25 chr14 52172671 52172895 + 2.75 NA Intergenic Intergenic -94915 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 480.25 chr12 48846277 48846599 + 2.75 NA intron (NM_004818, intron 1 of 16) intron (NM_004818, intron 1 of 16) 5725 NM_004818 9416 Hs.130098 NM_004818 ENSG00000174243 DDX23 PRPF28|SNRNP100|U5-100K|U5-100KD|prp28 DEAD-box helicase 23 protein-coding 534.25 chr8 84048204 84048529 + 2.75 NA Intergenic L1ME4b|LINE|L1 -134421 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 378.5-5 chr5 132428386 132428742 + 2.75 NA intron (NR_161242, intron 2 of 3) L2a|LINE|L2 17635 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 401.25 chr1 27429888 27430114 + 2.75 NA intron (NM_006990, intron 1 of 8) intron (NM_006990, intron 1 of 8) 37379 NM_005281 2827 Hs.66542 NM_005281 ENSG00000181773 GPR3 ACCA G protein-coupled receptor 3 protein-coding 297.5-9 chr5 51755008 51755131 + 2.75 NA Intergenic MER101-int|LTR|ERV1 -252962 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 580.25 chr1 189630803 189631196 + 2.75 NA Intergenic Intergenic 845011 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 278.25-12 chr2 68263610 68263795 + 2.75 NA Intergenic Intergenic -11170 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 241.25-3 chr11 7051924 7052044 + 2.75 NA intron (NM_176822, intron 6 of 11) intron (NM_176822, intron 6 of 11) 31515 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 429-5 chr2 139245662 139245958 + 2.75 NA Intergenic Intergenic 348486 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 170-5 chr11 6980311 6980374 + 2.75 NA intron (NR_149005, intron 6 of 6) intron (NR_149005, intron 6 of 6) 40004 NR_148988 7761 Hs.445849 NM_013249 ENSG00000149050 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 406 chr1 166930883 166931124 + 2.75 NA intron (NM_199351, intron 6 of 9) intron (NM_199351, intron 6 of 9) 44537 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 307-17 chr8 26344447 26344648 + 2.75 NA intron (NM_001177591, intron 3 of 9) intron (NM_001177591, intron 3 of 9) 38406 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 398.5-3 chr12 46876619 46876801 + 2.75 NA Intergenic (TACATTA)n|Simple_repeat|Simple_repeat -50713 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 418.5-4 chr13 91339518 91339786 + 2.75 NA Intergenic AluJb|SINE|Alu -8168 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 333.5-5 chr17 33051642 33051851 + 2.75 NA intron (NM_183377, intron 3 of 9) MIRb|SINE|MIR 58895 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 279-17 chr4 76038252 76038356 + 2.75 NA intron (NM_001130017, intron 1 of 9) Tigger7|DNA|TcMar-Tigger -2234 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 393.75-3 chr14 66285654 66285833 + 2.75 NA Intergenic MSTD|LTR|ERVL-MaLR -200628 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 307.75-4 chr17 68982441 68982621 + 2.75 NA intron (NM_080283, intron 37 of 38) intron (NM_080283, intron 37 of 38) -22183 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 452.5-3 chr7 38225182 38225415 + 2.75 NA intron (NM_001363347, intron 7 of 8) L1MB7|LINE|L1 47053 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 595.5 chr3 114284795 114285013 + 2.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -9124 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 203.5-5 chr10 83095661 83095758 + 2.75 NA Intergenic Intergenic 581380 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 404.75-4 chr5 108664216 108664412 + 2.75 NA Intergenic Intergenic 63947 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 684.25 chr9 36907172 36907832 + 2.75 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -13971 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 268.25 chr1 49662693 49662819 + 2.75 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -190671 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 948.5 chr2 91420761 91421454 + 2.75 NA Intergenic Intergenic 238842 NR_027238 654342 Hs.469287 NR_027238 LSP1P4 - LSP1 pseudogene 4 pseudo 391.25-2 chr3 157659615 157659848 + 2.75 NA Intergenic Intergenic 116387 NM_001130002 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 381.25-4 chr7 104922461 104922799 + 2.75 NA intron (NR_027374, intron 1 of 3) MIRb|SINE|MIR 4015 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 329 chr1 82658154 82658348 + 2.75 NA Intergenic Intergenic -244932 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 415-3 chr8 87161548 87161775 + 2.75 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 295246 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 302.25-6 chr17 10899140 10899273 + 2.75 NA Intergenic Intergenic -61119 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 454.25-2 chr3 138516005 138516262 + 2.75 NA intron (NM_001320599, intron 11 of 17) intron (NM_001320599, intron 11 of 17) 75823 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 379.5-8 chr8 143627577 143627800 + 2.75 NA Intergenic AluSx1|SINE|Alu -8331 NM_001261843 9831 Hs.43133 NM_014789 ENSG00000183309 ZNF623 - zinc finger protein 623 protein-coding 446-2 chr8 129739227 129739564 + 2.75 NA Intergenic Intergenic 47229 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 522.75-2 chr6 73117914 73118276 + 2.75 NA intron (NM_001160132, intron 7 of 13) L1ME3A|LINE|L1 25419 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 389.25-6 chr4 49634105 49634469 + 2.75 NA Intergenic (GAATG)n|Satellite|Satellite 647645 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1082.75 chrUn_GL000216v2 112 947 + 2.75 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 391-6 chr6 51711096 51711263 + 2.75 NA intron (NM_138694, intron 60 of 66) LTR16E2|LTR|ERVL 89309 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 471.75 chr9 27137501 27137851 + 2.75 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 28535 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 168-69 chrM 11749 11864 + 2.75 NA Intergenic Intergenic -4292 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 378.25 chr15 96089609 96089795 + 2.75 NA intron (NR_158193, intron 6 of 7) intron (NR_158193, intron 6 of 7) 38139 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 367.25-7 chr3 150527895 150528063 + 2.75 NA Intergenic Intergenic 18517 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 496 chr8 123219568 123219827 + 2.75 NA TTS (NM_032847) TTS (NM_032847) -3834 NR_039808 100616260 NR_039808 ENSG00000266324 MIR4663 - microRNA 4663 ncRNA 280.25-19 chr5 129959239 129959492 + 2.75 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 54900 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 493.25 chr2 172998851 172999135 + 2.75 NA intron (NM_001282901, intron 10 of 24) intron (NM_001282901, intron 10 of 24) 70788 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 328.5-4 chr11 74405749 74405912 + 2.75 NA Intergenic L1MB8|LINE|L1 6593 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 280.25-7 chr18 79259613 79259862 + 2.75 NA intron (NM_198531, intron 12 of 29) intron (NM_198531, intron 12 of 29) -136193 NM_001278670 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 549.25 chr1 66581499 66581767 + 2.75 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) -46807 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 384.75-4 chr6 82505367 82505566 + 2.75 NA Intergenic Intergenic 141222 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 437.25-2 chr12 43138696 43138904 + 2.75 NA Intergenic L1MB8|LINE|L1 -16515 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 507 chr16 76511341 76511583 + 2.75 NA intron (NR_136213, intron 15 of 23) intron (NR_136213, intron 15 of 23) -123536 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 458.75-2 chr3 151935165 151935540 + 2.75 NA Intergenic Intergenic -7177 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 554.5 chr14 75520046 75520300 + 2.75 NA Intergenic L2a|LINE|L2 -2296 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 235.75-16 chr22 24935069 24935166 + 2.75 NA 3' UTR (NM_001001663, exon 4 of 4) 3' UTR (NM_001001663, exon 4 of 4) 11578 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 429 chr10 56290580 56290748 + 2.75 NA Intergenic L1M2|LINE|L1 70595 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 447.75-2 chr18 38020060 38020414 + 2.75 NA Intergenic L1MEh|LINE|L1 363102 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 440.75-3 chr2 231349177 231349393 + 2.75 NA intron (NM_001352754, intron 21 of 24) L1MA2|LINE|L1 -13423 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 520 chr21 26330707 26330978 + 2.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -62793 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 381.5-4 chr8 19793366 19793671 + 2.75 NA Intergenic LTR16B2|LTR|ERVL -23631 NM_001353509 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 526.5-2 chr16 56210892 56211180 + 2.75 NA intron (NM_138736, intron 2 of 7) MIR3|SINE|MIR -16511 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 458.25 chr14 65466928 65467240 + 2.75 NA intron (NM_004480, intron 2 of 9) L1MCa|LINE|L1 -4018 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 382.5-10 chr8 133446496 133446748 + 2.75 NA Intergenic Intergenic 125265 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 330.75-9 chr7 25819587 25819828 + 2.75 NA Intergenic Intergenic -29588 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 559-2 chr7 106760848 106761175 + 2.75 NA Intergenic Intergenic -99853 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 473.25-2 chr8 83670165 83670429 + 2.75 NA Intergenic L1MA8|LINE|L1 266539 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 230.75-24 chr6 138042029 138042128 + 2.75 NA Intergenic L1MB2|LINE|L1 65341 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 493.75 chr14 54979624 54979851 + 2.75 NA intron (NM_007086, intron 16 of 25) L1ME4b|LINE|L1 47362 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 418.5-7 chr7 107550253 107550487 + 2.75 NA intron (NM_181733, intron 3 of 20) L2a|LINE|L2 -13587 NR_073004 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 325.25-12 chr5 164480557 164480771 + 2.75 NA intron (NR_105065, intron 1 of 3) intron (NR_105065, intron 1 of 3) 10385 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 239-12 chr12 108764542 108764647 + 2.75 NA Intergenic Intergenic -33044 NM_014325 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 312.5-6 chr2 101539306 101539471 + 2.75 NA Intergenic Intergenic -64276 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 395.5 chr20 59593977 59594183 + 2.75 NA intron (NM_001199505, intron 1 of 12) L1MC1|LINE|L1 -10460 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 288.75-9 chr2 54515362 54515508 + 2.75 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) -13787 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 283-9 chr2 10705292 10705446 + 2.75 NA Intergenic L1ME3|LINE|L1 15359 NR_144555 106479524 Hs.646340 NR_144555 ENSG00000243819 RN7SL832P - RNA, 7SL, cytoplasmic 832, pseudogene pseudo 429.5-2 chr6 137272037 137272367 + 2.75 NA Intergenic Intergenic -52772 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 458-2 chr3 96429957 96430152 + 2.75 NA Intergenic Intergenic 70090 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 357-7 chr4 47583765 47583943 + 2.75 NA intron (NM_020453, intron 21 of 22) intron (NM_020453, intron 21 of 22) -68815 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 569.5-2 chr10 118525076 118525440 + 2.75 NA Intergenic MER8|DNA|TcMar-Tigger 70390 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 388.25 chr19 15274339 15274599 + 2.75 NA intron (NM_001330384, intron 1 of 11) intron (NM_001330384, intron 1 of 11) 5982 NM_014299 23476 Hs.187763 NM_014299 ENSG00000141867 BRD4 CAP|HUNK1|HUNKI|MCAP bromodomain containing 4 protein-coding 426.25-3 chr9 87129546 87129829 + 2.75 NA Intergenic L1ME3Cz|LINE|L1 -18957 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 562.25 chr12 119923033 119923382 + 2.75 NA Intergenic AluJr|SINE|Alu -45887 NM_007174 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 346-6 chr14 74417954 74418173 + 2.75 NA intron (NM_001105579, intron 1 of 3) intron (NM_001105579, intron 1 of 3) 8147 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 463.25-2 chr11 28320592 28320793 + 2.75 NA intron (NM_001113528, intron 6 of 6) intron (NM_001113528, intron 6 of 6) 156856 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 555 chr8 142564843 142565218 + 2.75 NA Intergenic LTR41|LTR|ERVL 49449 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 497 chr1 114458838 114459195 + 2.75 NA intron (NM_015906, intron 4 of 19) intron (NM_015906, intron 4 of 19) 52187 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 343-11 chr6 48392961 48393188 + 2.75 NA Intergenic L1MC2|LINE|L1 -324385 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 249.75-28 chrX 102581921 102582072 + 2.75 NA Intergenic Intergenic -17210 NM_001168479 64860 Hs.522729 NM_022838 ENSG00000125962 ARMCX5 GASP5 armadillo repeat containing X-linked 5 protein-coding 399.75-3 chr12 107001481 107001756 + 2.75 NA intron (NM_004075, intron 4 of 12) intron (NM_004075, intron 4 of 12) -14452 NM_025198 80298 Hs.5009 NM_025198 ENSG00000120832 MTERF2 MTERFD3|mTERFL mitochondrial transcription termination factor 2 protein-coding 266-7 chr14 43612061 43612247 + 2.75 NA Intergenic HERV4_I-int|LTR|ERV1 895129 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 201.75-21 chr2 167317678 167317808 + 2.75 NA Intergenic Intergenic 130371 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 496-2 chr9 20645045 20645421 + 2.75 NA Intergenic Intergenic -13076 NM_017794 54914 Hs.136247 NM_017794 ENSG00000188352 FOCAD KIAA1797 focadhesin protein-coding 440.25 chr1 215687636 215688068 + 2.75 NA intron (NM_206933, intron 61 of 71) L2a|LINE|L2 120548 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 325.5-12 chr8 85538825 85539078 + 2.75 NA Intergenic Intergenic -74036 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 216-35 chr6 87205402 87205521 + 2.75 NA intron (NM_015021, intron 1 of 7) L1M5|LINE|L1 49896 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 342-3 chr11 38618619 38618782 + 2.75 NA intron (NR_120554, intron 4 of 4) L2|LINE|L2 27656 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 368.75-5 chr7 98650441 98650631 + 2.75 NA Intergenic L1MEc|LINE|L1 33251 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 422.5-4 chr6 44616183 44616500 + 2.75 NA Intergenic AluJr|SINE|Alu -64460 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 409.75-2 chr16 86651668 86651924 + 2.75 NA Intergenic Intergenic 70163 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 462 chr1 106416661 106416926 + 2.75 NA Intergenic L2|LINE|L2 -388540 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 335.25 chr1 91822010 91822180 + 2.75 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 64056 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 409.5 chr1 169117961 169118242 + 2.75 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 11411 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 208.25-32 chr5 49667133 49667230 + 2.75 NA Intergenic (CATTC)n|Satellite|Satellite 774107 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 533.25 chr5 14213040 14213528 + 2.75 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 69942 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 402.25-6 chr5 4206810 4207125 + 2.75 NA Intergenic Intergenic -566514 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 503.25 chr10 119849768 119850021 + 2.75 NA intron (NM_024834, intron 6 of 15) intron (NM_024834, intron 6 of 15) 22989 NM_001256378 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 426.75 chr18 13604232 13604592 + 2.75 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -6702 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 214.5-4 chr1 217975124 217975253 + 2.75 NA Intergenic L2c|LINE|L2 -68317 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 349.5-4 chr19 39776563 39776711 + 2.75 NA promoter-TSS (NM_001143832) promoter-TSS (NM_001143832) 43 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 343-7 chr22 34972267 34972453 + 2.75 NA intron (NR_138042, intron 1 of 4) MIRc|SINE|MIR 25556 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 365.75-3 chr3 40593045 40593198 + 2.75 NA Intergenic L1M5|LINE|L1 68161 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 392.25 chr2 182712519 182712689 + 2.75 NA Intergenic AluY|SINE|Alu -3653 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 322.25-5 chr14 71786400 71786554 + 2.75 NA Intergenic MER96B|DNA|hAT-Tip100 -145694 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 399 chr1 219537028 219537208 + 2.75 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 20206 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 510.25 chr9 29702431 29702628 + 2.75 NA Intergenic Intergenic -488928 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 477.5 chr20 49683243 49683578 + 2.75 NA intron (NM_004776, intron 1 of 8) AluSx1|SINE|Alu 30468 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 343-4 chr2 64440609 64440805 + 2.75 NA Intergenic Intergenic -13455 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 377.5-6 chr5 10242960 10243156 + 2.5 NA intron (NM_199133, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 6830 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 227-19 chr2 101528442 101528573 + 2.5 NA Intergenic Intergenic -53395 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 393.5 chr5 77590497 77590693 + 2.5 NA Intergenic Intergenic 48102 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 198-41 chr5 128703794 128703945 + 2.5 NA Intergenic Intergenic -165624 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 275-3 chr10 65730098 65730219 + 2.5 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 158733 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 336-10 chr21 15739671 15739932 + 2.5 NA intron (NM_001352560, intron 1 of 23) intron (NM_001352560, intron 1 of 23) 9819 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 252.25-10 chr17 62892255 62892375 + 2.5 NA Intergenic Intergenic -51900 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 330.5-8 chr3 125610196 125610370 + 2.5 NA Intergenic LTR54B|LTR|ERV1 -14786 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 479.25-2 chr14 66393863 66394179 + 2.5 NA Intergenic MIR|SINE|MIR -92350 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 243.5-33 chr9 35567804 35568059 + 2.5 NA Intergenic AluJb|SINE|Alu -4053 NM_001287239 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 237-10 chr13 105850483 105850659 + 2.5 NA Intergenic MER58B|DNA|hAT-Charlie 143741 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 318-25 chr8 114856854 114857101 + 2.5 NA Intergenic L1MEd|LINE|L1 811036 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 176.75-19 chr18 5806284 5806456 + 2.5 NA Intergenic L1MB7|LINE|L1 -34325 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 186.25-9 chr10 92112506 92112641 + 2.5 NA intron (NM_001178137, intron 6 of 9) intron (NM_001178137, intron 6 of 9) 130706 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 513.5 chr8 87783166 87783498 + 2.5 NA Intergenic L1M2|LINE|L1 90683 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 357.5-7 chr2 209677936 209678180 + 2.5 NA intron (NM_001039538, intron 5 of 14) intron (NM_001039538, intron 5 of 14) -93774 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 344-5 chr2 36119061 36119261 + 2.5 NA Intergenic L1MC4a|LINE|L1 236409 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 248.5-6 chr12 45790730 45790845 + 2.5 NA intron (NM_152641, intron 3 of 20) L1MEg|LINE|L1 61078 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 231-25 chr3 152063631 152063831 + 2.5 NA Intergenic Intergenic -135556 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 347.5-5 chr13 104875610 104875835 + 2.5 NA Intergenic Intergenic -590145 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 483.5 chr12 22294720 22295036 + 2.5 NA intron (NM_003034, intron 1 of 4) intron (NM_003034, intron 1 of 4) 39836 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 318.25-2 chr2 142591046 142591336 + 2.5 NA Intergenic Intergenic -286473 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 288.75-17 chr7 15302311 15302486 + 2.5 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 259617 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 432 chr20 33204458 33204858 + 2.5 NA intron (NR_026760, intron 5 of 8) intron (NR_026760, intron 5 of 8) 11053 NR_026760 317716 Hs.434194 NM_173859 ENSG00000183566 BPIFA4P BASE BPI fold containing family A member 4, pseudogene pseudo 368.5-3 chr22 26157476 26157728 + 2.5 NA Intergenic MIRb|SINE|MIR -11860 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 503-2 chr7 28266453 28266802 + 2.5 NA Intergenic MER57C2|LTR|ERV1 -32694 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 155-23 chr16 80801741 80801820 + 2.5 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 2818 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 479.25-3 chr6 146563953 146564185 + 2.5 NA Intergenic Intergenic 20236 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 431-2 chr17 58080187 58080637 + 2.5 NA non-coding (NR_110809, exon 2 of 3) non-coding (NR_110809, exon 2 of 3) 2792 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 313.5-6 chr2 46086002 46086163 + 2.5 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -211325 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 350.25-5 chr21 28587122 28587494 + 2.5 NA Intergenic Intergenic 47990 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 324.5-3 chr10 61581264 61581558 + 2.5 NA Intergenic Intergenic -81518 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 275-6 chr16 13804112 13804235 + 2.5 NA Intergenic Intergenic -115984 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 156.25-32 chr2 40435031 40435129 + 2.5 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -4776 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 430-2 chr4 40125372 40125624 + 2.5 NA intron (NM_001318359, intron 12 of 18) Charlie17a|DNA|hAT-Charlie -65582 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 307.5-12 chr6 55455001 55455243 + 2.5 NA intron (NR_109869, intron 3 of 4) FRAM|SINE|Alu 124092 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 286.25-2 chr1 157071576 157071768 + 2.5 NA Intergenic L2|LINE|L2 -25930 NM_014784 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 333-4 chr12 75205231 75205396 + 2.5 NA intron (NM_001260499, intron 2 of 3) MIR3|SINE|MIR 4435 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 405.5 chr1 35263351 35263663 + 2.5 NA Intergenic L2b|LINE|L2 -5202 NM_001350140 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 283.75-11 chr3 184861823 184862044 + 2.5 NA intron (NM_001009921, intron 14 of 46) Kanga2_a|DNA|TcMar-Tc2 49426 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 292-5 chr16 82002037 82002313 + 2.5 NA intron (NM_145168, intron 1 of 2) intron (NM_145168, intron 1 of 2) 9295 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 233 chr1 36059071 36059260 + 2.5 NA 3' UTR (NM_024852, exon 19 of 19) 3' UTR (NM_024852, exon 19 of 19) -24929 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 322-11 chr9 115167128 115167281 + 2.5 NA intron (NR_163556, intron 1 of 7) intron (NR_163556, intron 1 of 7) 25386 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 169.5-86 chr8 134506684 134506806 + 2.5 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -91326 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 190-27 chr2 154338889 154338975 + 2.5 NA intron (NM_052917, intron 9 of 12) MER74A|LTR|ERVL 118506 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 318 chr1 59925365 59925565 + 2.5 NA intron (NM_000775, intron 1 of 8) L1MDa|LINE|L1 1308 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 268.75-8 chr12 104185652 104185876 + 2.5 NA Intergenic Intergenic -30015 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 285.75-12 chr2 63933568 63933782 + 2.5 NA exon (NM_016516, exon 12 of 23) exon (NM_016516, exon 12 of 23) 85753 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 360.5-8 chr4 78923767 78923996 + 2.5 NA non-coding (NR_146462, exon 5 of 7) non-coding (NR_146462, exon 5 of 7) 15557 NR_146465 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 350.25-6 chr3 7765273 7765487 + 2.5 NA Intergenic Intergenic -230096 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 367.5-6 chr9 25554771 25555032 + 2.5 NA Intergenic MIR|SINE|MIR 123957 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 264.5-7 chr12 38430999 38431179 + 2.5 NA Intergenic Intergenic 114315 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 315.5-6 chr2 77369047 77369201 + 2.5 NA intron (NR_146416, intron 1 of 1) L1M3|LINE|L1 153252 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 187.5-18 chr13 71192176 71192421 + 2.5 NA Intergenic LTR52|LTR|ERVL 177157 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 362.5 chr1 44606322 44606584 + 2.5 NA intron (NM_001319957, intron 1 of 13) (TGGA)n|Simple_repeat|Simple_repeat 60960 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 379-8 chr4 94776762 94776931 + 2.5 NA intron (NM_001203, intron 1 of 12) L1ME4a|LINE|L1 18891 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 442.5 chr11 38888072 38888286 + 2.5 NA Intergenic Intergenic 239321 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 285-23 chr7 39404355 39404552 + 2.5 NA TTS (NR_046711) TTS (NR_046711) 1893 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 249-18 chr2 74568032 74568220 + 2.5 NA intron (NM_001321739, intron 7 of 10) intron (NM_001321739, intron 7 of 10) 13966 NM_001318867 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 229 chr1 85739147 85739264 + 2.5 NA intron (NM_152890, intron 57 of 59) intron (NM_152890, intron 57 of 59) -30772 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 282-21 chr4 87915967 87916128 + 2.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -59603 NM_001040060 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 387-2 chr11 68087655 68087814 + 2.5 NA intron (NM_001277, intron 2 of 11) intron (NM_001277, intron 2 of 11) 33654 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 230-31 chr8 68990215 68990320 + 2.5 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 113923 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 344.5-2 chr1 173948297 173948588 + 2.5 NA intron (NM_001300852, intron 13 of 18) (AT)n|Simple_repeat|Simple_repeat -31064 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 370-5 chr14 64762019 64762226 + 2.5 NA intron (NM_001024858, intron 31 of 34) intron (NM_001024858, intron 31 of 34) 23564 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 455.5-2 chr8 128201397 128201722 + 2.5 NA Intergenic Intergenic 51443 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 397.5-4 chr2 126622761 126622991 + 2.5 NA Intergenic Intergenic -33059 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 342.25-2 chr18 1017428 1017676 + 2.5 NA Intergenic Intergenic -89559 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 354.75-8 chr5 55759549 55759885 + 2.5 NA intron (NM_024415, intron 3 of 21) intron (NM_024415, intron 3 of 21) -7168 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 144-75 chr8 125279114 125279210 + 2.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -151196 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 213-52 chr9 77824440 77824581 + 2.5 NA intron (NM_002072, intron 2 of 6) BLACKJACK|DNA|hAT-Blackjack -176188 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 330-2 chr12 40505052 40505355 + 2.5 NA intron (NM_173600, intron 72 of 173) intron (NM_173600, intron 72 of 173) 111809 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 423.5 chr12 40184825 40185142 + 2.5 NA Intergenic Intergenic 28744 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 192.5-8 chr11 8872527 8872648 + 2.5 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) 38364 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 359.75-4 chr14 45969039 45969373 + 2.5 NA Intergenic Intergenic -94953 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 345-6 chr15 79310695 79310927 + 2.5 NA promoter-TSS (NM_001363735) promoter-TSS (NM_001363735) -251 NM_001330376 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 385-5 chr2 95054329 95054515 + 2.5 NA TTS (NM_022439) TTS (NM_022439) 28714 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 500 chr1 232444286 232444612 + 2.5 NA intron (NM_020808, intron 9 of 20) intron (NM_020808, intron 9 of 20) 71159 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 210.75-8 chr13 112855678 112855846 + 2.5 NA intron (NM_032189, intron 19 of 28) intron (NM_032189, intron 19 of 28) -101031 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 370.75-3 chr7 53463720 53463956 + 2.5 NA Intergenic Intergenic 348093 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 444.5 chr10 37847719 37848068 + 2.5 NA intron (NR_147991, intron 1 of 4) L1MC5|LINE|L1 9717 NM_001267607 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 540.75 chr14 31384787 31385210 + 2.5 NA intron (NM_015473, intron 9 of 35) intron (NM_015473, intron 9 of 35) 35552 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 561.5 chr3 113616032 113616412 + 2.5 NA intron (NR_136285, intron 16 of 20) intron (NR_136285, intron 16 of 20) 21346 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 509.75-3 chr8 70377298 70377683 + 2.5 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 25900 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 353-4 chr5 168697521 168697690 + 2.5 NA intron (NM_003062, intron 27 of 35) intron (NM_003062, intron 27 of 35) -9322 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 296-13 chr22 25574357 25574602 + 2.5 NA intron (NM_001362778, intron 1 of 19) AluJb|SINE|Alu 9804 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 192-7 chr10 117906867 117906971 + 2.5 NA Intergenic Intergenic -139902 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 224.5-38 chr7 89640466 89640694 + 2.5 NA Intergenic Intergenic -478820 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 245-36 chr7 103329771 103329889 + 2.5 NA intron (NM_001362668, intron 3 of 17) intron (NM_001362668, intron 3 of 17) 14937 NM_014377 27000 Hs.558476 NM_014377 ENSG00000105821 DNAJC2 MPHOSPH11|MPP11|ZRF1|ZUO1 DnaJ heat shock protein family (Hsp40) member C2 protein-coding 259-16 chr2 156310366 156310549 + 2.5 NA Intergenic Intergenic 22264 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 470.75-3 chr8 80496695 80496980 + 2.5 NA intron (NM_001105539, intron 1 of 5) intron (NM_001105539, intron 1 of 5) 10611 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 402.25-5 chr4 57230016 57230228 + 2.5 NA Intergenic MER4A1_|LTR|ERV1 -119737 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 276.5-12 chr3 131031180 131031331 + 2.5 NA intron (NM_001353039, intron 3 of 16) intron (NM_001353039, intron 3 of 16) 3527 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 398.5 chr1 211603972 211604182 + 2.5 NA Intergenic AluJb|SINE|Alu -24916 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 480.75 chr8 121577557 121577970 + 2.5 NA Intergenic MIR3|SINE|MIR -61583 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 341.5-3 chr2 45833092 45833340 + 2.5 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 181541 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 271.5-3 chr12 131386572 131386800 + 2.5 NA Intergenic Intergenic 39216 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 214.25-30 chr4 30365629 30365783 + 2.5 NA Intergenic Intergenic -354663 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 144-76 chr8 134512802 134512902 + 2.5 NA intron (NM_020863, intron 13 of 15) intron (NM_020863, intron 13 of 15) -85219 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 315-14 chr6 145171656 145171846 + 2.5 NA Intergenic L1MA2|LINE|L1 515126 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 488.75 chr3 149912884 149913215 + 2.5 NA intron (NM_183383, intron 6 of 8) Charlie1b|DNA|hAT-Charlie 57846 NM_002628 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 198-30 chr3 169411082 169411221 + 2.5 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -36716 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 387 chr1 232851971 232852211 + 2.5 NA Intergenic Intergenic 47199 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 357.5-6 chr2 193335261 193335548 + 2.5 NA Intergenic Intergenic 585559 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 202.5-42 chr5 77427217 77427359 + 2.5 NA 3' UTR (NM_001349750, exon 23 of 23) 3' UTR (NM_001349750, exon 23 of 23) 65028 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 322.5-3 chr14 54696727 54696883 + 2.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -58028 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 306-17 chr3 82457774 82457986 + 2.5 NA intron (NR_147146, intron 7 of 8) LTR24C|LTR|ERV1 471738 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 339 chr1 112954250 112954443 + 2.5 NA intron (NM_003051, intron 1 of 4).2 intron (NM_003051, intron 1 of 4).2 1717 NM_001166496 6566 Hs.75231 NM_003051 ENSG00000155380 SLC16A1 HHF7|MCT|MCT1|MCT1D solute carrier family 16 member 1 protein-coding 479 chr10 103312706 103313068 + 2.5 NA intron (NM_001011663, intron 9 of 9) AluSx|SINE|Alu 35749 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 304.25-3 chr11 62027215 62027398 + 2.5 NA Intergenic Intergenic -59672 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 311.25-5 chr21 24508873 24509056 + 2.5 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 80224 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 240-29 chr9 127739125 127739256 + 2.5 NA intron (NM_001252334, intron 11 of 11) intron (NM_001252334, intron 11 of 11) -3896 NM_001252018 27433 Hs.444106 NM_130459 ENSG00000160404 TOR2A TORP1 torsin family 2 member A protein-coding 377.5-4 chr2 72778057 72778309 + 2.5 NA intron (NR_135774, intron 1 of 19) L1M4|LINE|L1 47850 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 265.75-10 chr22 29097614 29097856 + 2.5 NA intron (NM_001039570, intron 2 of 8) L1ME4a|LINE|L1 24700 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 235.5-46 chr5 75435338 75435518 + 2.5 NA intron (NM_031361, intron 3 of 16) L1PA15|LINE|L1 76201 NM_031361 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 369-11 chr5 7954372 7954628 + 2.5 NA Intergenic Intergenic 85352 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 472.5-3 chr3 35915446 35915819 + 2.5 NA Intergenic L1ME1|LINE|L1 171156 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 275.5-24 chr5 104496745 104496924 + 2.5 NA Intergenic Intergenic -602640 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 199.25-35 chr6 49081515 49081671 + 2.5 NA Intergenic L1M1|LINE|L1 381660 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 292.75-16 chr9 137706111 137706319 + 2.5 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 82191 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 366.5-10 chr6 162318833 162319052 + 2.5 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -408190 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 422.25-3 chr3 56723583 56723888 + 2.5 NA Intergenic MIR|SINE|MIR -40470 NM_001365637 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 339.25-6 chr9 18150369 18150540 + 2.5 NA Intergenic L2|LINE|L2 -323699 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 269.5-9 chr11 74668722 74668901 + 2.5 NA Intergenic Intergenic 42556 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 272.5-21 chr6 103062447 103062608 + 2.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 1663542 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 249.5-31 chr7 112315216 112315358 + 2.5 NA intron (NM_021994, intron 4 of 11) intron (NM_021994, intron 4 of 11) -107857 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 282.75-15 chr6 41140202 41140543 + 2.5 NA intron (NR_026938, intron 22 of 22) intron (NR_026938, intron 22 of 22) 13977 NM_001271807 340205 Hs.117331 NM_178174 ENSG00000161911 TREML1 GLTL1825|PRO3438|TLT-1|TLT1|dJ238O23.3 triggering receptor expressed on myeloid cells like 1 protein-coding 301.25-7 chr5 5385784 5385935 + 2.5 NA Intergenic Intergenic -36818 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 168.75-6 chr11 76502537 76502622 + 2.5 NA intron (NM_001300942, intron 10 of 21) L1MB8|LINE|L1 57554 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 251-18 chr3 60972520 60972652 + 2.5 NA intron (NR_148922, intron 3 of 3) L1MEg|LINE|L1 278866 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 563 chr10 86432110 86432460 + 2.5 NA Intergenic L1ME2|LINE|L1 -65490 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 273-14 chr2 68546593 68546728 + 2.5 NA intron (NM_173545, intron 8 of 9) L1M5|LINE|L1 79075 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 387.5 chr1 161804108 161804367 + 2.5 NA intron (NM_007348, intron 7 of 15) intron (NM_007348, intron 7 of 15) 37917 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 1170 chr4 49148430 49149865 + 2.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162505 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 251.75-8 chr22 20118859 20118979 + 2.5 NA intron (NM_001278641, intron 1 of 5) intron (NM_001278641, intron 1 of 5) 1174 NM_001278641 5902 Hs.24763 NM_002882 ENSG00000099901 RANBP1 HTF9A RAN binding protein 1 protein-coding 419-3 chr17 66227236 66227436 + 2.5 NA intron (NM_000042, intron 2 of 7) intron (NM_000042, intron 2 of 7) 2079 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 580 chr12 51900110 51900412 + 2.5 NA Intergenic Intergenic -7157 NM_000020 94 Hs.591026 NM_000020 ENSG00000139567 ACVRL1 ACVRLK1|ALK-1|ALK1|HHT|HHT2|ORW2|SKR3|TSR-I activin A receptor like type 1 protein-coding 288.75-11 chr20 17702084 17702212 + 2.5 NA intron (NM_001014977, intron 1 of 2) intron (NM_001014977, intron 1 of 2) 2200 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 349 chr13 48380767 48381030 + 2.5 NA intron (NM_000321, intron 16 of 26) L1ME4c|LINE|L1 32215 NM_001162498 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 299-6 chr13 76111833 76111996 + 2.5 NA Intergenic L1MC|LINE|L1 -176782 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 250.5-6 chr10 65343232 65343373 + 2.5 NA Intergenic LTR53|LTR|ERVL -228123 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 385-9 chr9 101888619 101888845 + 2.5 NA Intergenic Intergenic -150152 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 441-2 chr16 7997192 7997430 + 2.5 NA Intergenic MamRep1527|LTR|LTR 592527 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 469.5-3 chr14 51420478 51420800 + 2.5 NA Intergenic MER2|DNA|TcMar-Tigger -23504 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 557.25 chr2 237086378 237086964 + 2.5 NA intron (NM_006710, intron 1 of 7) intron (NM_006710, intron 1 of 7) 782 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 401.25-7 chr6 140819329 140819546 + 2.5 NA Intergenic Intergenic 135623 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 462-2 chr15 68709088 68709322 + 2.5 NA intron (NM_006091, intron 3 of 11) L1ME4c|LINE|L1 67702 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 239.5-15 chr3 21957134 21957312 + 2.5 NA promoter-TSS (NR_046876) promoter-TSS (NR_046876) 84 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 233.5-44 chr5 108019255 108019391 + 2.5 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -348386 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 472.5-2 chr17 54042971 54043440 + 2.5 NA Intergenic Intergenic 220278 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 380.5-4 chr3 74695872 74696186 + 2.5 NA Intergenic Intergenic -174889 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 406.5 chr11 86596686 86596914 + 2.5 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 75398 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 443.75 chr10 63059372 63059653 + 2.5 NA Intergenic Intergenic -73735 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 372-2 chr13 112957690 112957941 + 2.5 NA Intergenic Intergenic 10823 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 423 chr12 16580052 16580329 + 2.5 NA intron (NR_045014, intron 2 of 3) FLAM_A|SINE|Alu 25189 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 387.5-7 chr7 32384798 32385089 + 2.5 NA intron (NM_001322059, intron 1 of 17) L2b|LINE|L2 43281 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 710 chr2 79077430 79077803 + 2.5 NA Intergenic L1M4|LINE|L1 10377 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 336.5-10 chr5 73639696 73639963 + 2.5 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 13671 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 270.75-8 chr17_GL000205v2_random 53345 53715 + 2.5 NA Intergenic L1M3|LINE|L1 4436 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 307.5-5 chr2 128168040 128168332 + 2.5 NA intron (NR_027671, intron 26 of 40) MER5A|DNA|hAT-Charlie 76986 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 425 chr14 47715442 47715645 + 2.5 NA Intergenic Tigger7|DNA|TcMar-Tigger -40589 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 179.5-26 chr12 38730379 38730661 + 2.5 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 175071 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 369.25-4 chr4 30368494 30368819 + 2.5 NA Intergenic Intergenic -351713 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 407.25 chr15 71007624 71007865 + 2.5 NA intron (NM_017691, intron 11 of 15) (TA)n|Simple_repeat|Simple_repeat 115301 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 236-32 chr6 137600226 137600362 + 2.5 NA Intergenic Intergenic -65352 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 233.5-12 chr12 39670591 39670727 + 2.5 NA intron (NM_001031748, intron 7 of 12) L1MA4A|LINE|L1 44476 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 318.5-3 chr10 97822682 97822858 + 2.5 NA Intergenic Intergenic 27028 NR_108035 100505561 Hs.351904 NR_108035 ENSG00000227356 LINC00866 - long intergenic non-protein coding RNA 866 ncRNA 303.5-12 chr4 60610353 60610564 + 2.5 NA Intergenic Intergenic -312161 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 252.5-7 chr14 81195759 81195951 + 2.5 NA intron (NM_015859, intron 6 of 8) intron (NM_015859, intron 6 of 8) 6979 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 367.5-3 chr11 83960897 83961099 + 2.5 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -278573 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 285.75-14 chr2 232626804 232627041 + 2.5 NA intron (NM_001243252, intron 1 of 3) AluJo|SINE|Alu -6682 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 345.5 chr11 111382147 111382413 + 2.5 NA Intergenic L1ME5|LINE|L1 -3005 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 387-5 chr2 79131446 79131670 + 2.5 NA Intergenic ERVL47-int|LTR|ERVL 6869 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 416.75 chr12 9870663 9871002 + 2.5 NA promoter-TSS (NM_005127) promoter-TSS (NM_005127) -973 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 283.75-5 chr19 56953611 56953796 + 2.5 NA Intergenic Intergenic 112801 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 483.75 chr14 23753821 23754111 + 2.5 NA Intergenic Intergenic 117602 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 343.75 chr10 53107898 53108071 + 2.5 NA Intergenic Intergenic -336284 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 486 chr2 51724161 51724495 + 2.5 NA intron (NR_135237, intron 5 of 10) Tigger4b|DNA|TcMar-Tigger -646320 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 372.5-4 chr8 13873860 13874110 + 2.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 244295 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 400-6 chr5 110626268 110626512 + 2.5 NA intron (NM_001039763, intron 6 of 13) intron (NM_001039763, intron 6 of 13) 100281 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 200.5-71 chr9 121739381 121739560 + 2.5 NA intron (NM_032552, intron 3 of 16) L2a|LINE|L2 -3315 NM_138709 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 242.5-18 chr2 189465331 189465504 + 2.5 NA intron (NM_001303096, intron 13 of 21) intron (NM_001303096, intron 13 of 21) 23943 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 230-2 chr10 103144424 103144535 + 2.5 NA intron (NM_001351187, intron 3 of 21) intron (NM_001351187, intron 3 of 21) 9342 NM_001351174 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 447.5-6 chrX 75016109 75016294 + 2.5 NA Intergenic L3|LINE|CR1 -90749 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 389.75-3 chr8 133436548 133436736 + 2.5 NA Intergenic Intergenic 135245 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 412.5-3 chr4 61601328 61601528 + 2.5 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 399256 NM_001371342 412.5-2 chr18 4709991 4710241 + 2.5 NA Intergenic Intergenic -254809 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 375.5-2 chr11 44404583 44404842 + 2.5 NA Intergenic Intergenic -94573 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 488.75-2 chr6 139155610 139155999 + 2.5 NA intron (NM_016217, intron 1 of 3) intron (NM_016217, intron 1 of 3) 20724 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 320.5 chr1 172885783 172885999 + 2.5 NA Intergenic Intergenic 165072 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 233.75-14 chr14 68693727 68693886 + 2.5 NA Intergenic Intergenic -65019 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 173.5-17 chr13 19296579 19296691 + 2.5 NA intron (NR_027248, intron 11 of 20) intron (NR_027248, intron 11 of 20) 48338 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 449.5-4 chr4 30367024 30367208 + 2.5 NA Intergenic L1ME3F|LINE|L1 -353253 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 287.5-17 chr2 114248914 114249076 + 2.5 NA Intergenic Intergenic -193646 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 336.75-4 chr2 79831368 79831601 + 2.5 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 35099 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 395.75-2 chr3 54356646 54356915 + 2.5 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 234228 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 402.5-4 chr8 83969436 83969630 + 2.5 NA Intergenic Intergenic -213254 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 224.5-16 chr17 61158386 61158532 + 2.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 209245 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 233-16 chr16 56720965 56721104 + 2.5 NA Intergenic L1ME1|LINE|L1 -9095 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 252-31 chr8 116988166 116988354 + 2.5 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 37285 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 357.75-2 chr10 15696440 15696775 + 2.5 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 23315 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 530.5-2 chr4 93136629 93136967 + 2.5 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -691955 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 509.5 chr14 70751709 70751979 + 2.5 NA intron (NM_033141, intron 3 of 12) MIRb|SINE|MIR 31608 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 273.5-17 chr5 77130786 77130916 + 2.5 NA intron (NR_024398, intron 3 of 3) MER46C|DNA|TcMar-Tigger -43566 NM_032367 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 246-39 chr8 131987040 131987179 + 2.5 NA intron (NR_136616, intron 17 of 23) intron (NR_136616, intron 17 of 23) 70336 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 203-36 chr7 81743119 81743230 + 2.5 NA intron (NM_001010933, intron 7 of 7) intron (NM_001010933, intron 7 of 7) 26873 NM_001010934 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 287.75-11 chr8 117454956 117455187 + 2.5 NA Intergenic Intergenic -65642 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 361.5-6 chr3 41223119 41223383 + 2.5 NA intron (NM_001904, intron 1 of 14) Charlie15b|DNA|hAT-Charlie 23746 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 327-4 chr11 98038487 98038645 + 2.5 NA Intergenic Intergenic -982383 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 323.75-6 chr5 88832107 88832291 + 2.5 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) -5011 NM_001364342 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 284.5-2 chr1 78347688 78347967 + 2.5 NA intron (NR_027310, intron 4 of 5) L1MB5|LINE|L1 118228 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 326-7 chr14 78384614 78384863 + 2.5 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -18981 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 295.5-8 chr14 69854777 69854938 + 2.5 NA Intergenic L2a|LINE|L2 -24559 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 351.5-8 chr8 132997189 132997439 + 2.5 NA intron (NM_003235, intron 35 of 47) L2|LINE|L2 49267 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 485.25 chr2 54754611 54754837 + 2.5 NA intron (NM_001039753, intron 1 of 40) L1MEg|LINE|L1 29712 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 254-5 chr14 61077362 61077526 + 2.5 NA intron (NR_033344, intron 15 of 16) intron (NR_033344, intron 15 of 16) -95754 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 426-2 chr10 91107788 91108027 + 2.5 NA Intergenic MIRb|SINE|MIR 45173 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 477.75-2 chr6 67588495 67588698 + 2.5 NA Intergenic L1MCa|LINE|L1 -466755 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 355 chr1 194614197 194614479 + 2.5 NA Intergenic Intergenic 1309593 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 243.25-9 chr3 82683891 82684068 + 2.5 NA Intergenic L1MA7|LINE|L1 697837 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 452.5-2 chr2 35930155 35930410 + 2.5 NA Intergenic Charlie17b|DNA|hAT-Charlie 425288 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 347.5-2 chr10 19545941 19546139 + 2.5 NA intron (NM_001142308, intron 32 of 39) HAL1ME|LINE|L1 182510 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 274.5-14 chr2 28659315 28659586 + 2.5 NA Intergenic MIRb|SINE|MIR 76755 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 269.5-28 chr8 71265522 71265671 + 2.5 NA intron (NM_001370335, intron 14 of 20) intron (NM_001370335, intron 14 of 20) 91110 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 310.5-2 chr2 15853524 15853721 + 2.5 NA Intergenic L1M2|LINE|L1 -66777 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 368.5-5 chr5 4615004 4615172 + 2.5 NA Intergenic L1M4|LINE|L1 -158393 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 292.5-13 chr6 25934785 25935078 + 2.5 NA Intergenic L1ME3E|LINE|L1 -4240 NM_005835 10246 Hs.591802 NM_005835 ENSG00000112337 SLC17A2 NPT3 solute carrier family 17 member 2 protein-coding 400.75-3 chr6 3600126 3600367 + 2.5 NA Intergenic L1M2|LINE|L1 -143687 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 262.5-36 chr8 50821854 50822042 + 2.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 657817 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 478.75 chr17 61849278 61849547 + 2.5 NA intron (NM_032043, intron 4 of 19) intron (NM_032043, intron 4 of 19) 14147 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 233.75-27 chr6 55148079 55148226 + 2.5 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 41692 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 322.5-15 chr3 7849104 7849336 + 2.5 NA Intergenic Intergenic 167087 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 296-14 chr3 173528410 173528543 + 2.5 NA intron (NM_014932, intron 2 of 6) L1PB4|LINE|L1 -55958 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 201.75-36 chr7 79175725 79175870 + 2.5 NA intron (NM_001301128, intron 1 of 20) Tigger3a|DNA|TcMar-Tigger 166809 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 362.5-8 chr6 84532251 84532454 + 2.5 NA Intergenic L1MB7|LINE|L1 -57423 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 242.75-18 chr7 6387285 6387442 + 2.5 NA intron (NM_006908, intron 2 of 5) intron (NM_006908, intron 2 of 5) 12836 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 270.75-3 chr11 21640672 21641039 + 2.5 NA Intergenic Intergenic -552230 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 320.25-4 chr2 126957072 126957430 + 2.5 NA Intergenic L1MB4|LINE|L1 58361 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 296-15 chr4 42182553 42182694 + 2.5 NA Intergenic Intergenic -29968 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 362-5 chr7 50857227 50857440 + 2.5 NA Intergenic MLT1G3|LTR|ERVL-MaLR -63880 NM_001371008 504.5 chr4 31528244 31528498 + 2.5 NA intron (NR_149121, intron 1 of 2) L1PA15|LINE|L1 21827 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 470-2 chrX 99330259 99330602 + 2.5 NA Intergenic Intergenic 1079843 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 486-4 chr9 34307436 34307775 + 2.5 NA intron (NM_194313, intron 2 of 12) intron (NM_194313, intron 2 of 12) 21663 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 265-24 chr6 146875787 146875969 + 2.5 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -72054 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 537.5 chr12 87885853 87886106 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL -101268 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 313.25 chr1 115795678 115795976 + 2.5 NA Intergenic Intergenic -27022 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 224.5-23 chr2 140916706 140916841 + 2.5 NA intron (NM_018557, intron 21 of 90) L1ME4b|LINE|L1 -330088 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 357-10 chr8 48854729 48854953 + 2.5 NA Intergenic Intergenic 66588 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 422.5-5 chr6 55830031 55830278 + 2.5 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 45436 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 316.25-3 chr14 83513138 83513351 + 2.5 NA Intergenic Intergenic 870612 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 425-2 chr7 37917272 37917615 + 2.5 NA promoter-TSS (NM_003014) promoter-TSS (NM_003014) -626 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 161-61 chr7 79928329 79928430 + 2.5 NA Intergenic Intergenic -206452 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 369.5-4 chr3 160156004 160156248 + 2.5 NA intron (NR_108088, intron 3 of 9) intron (NR_108088, intron 3 of 9) 50966 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 346-11 chr5 21429481 21429694 + 2.5 NA Intergenic Intergenic -29893 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 393 chr14 45848615 45848875 + 2.5 NA Intergenic MLT2B2|LTR|ERVL -133143 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 195-35 chr21 45411578 45411705 + 2.5 NA intron (NM_130445, intron 2 of 42) intron (NM_130445, intron 2 of 42) -1576 NR_052004 100874236 Hs.589901 NR_052004 ENSG00000224574 COL18A1-AS2 - COL18A1 antisense RNA 2 ncRNA 320-4 chr12 42733727 42733892 + 2.5 NA Intergenic MIRb|SINE|MIR 41593 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 467.5-3 chr4 84719034 84719378 + 2.5 NA intron (NM_014991, intron 47 of 67) intron (NM_014991, intron 47 of 67) 136079 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 309-10 chr17 78046663 78046896 + 2.5 NA intron (NM_018996, intron 3 of 20) L1M5|LINE|L1 42542 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 206-15 chr2 29181972 29182057 + 2.5 NA 3' UTR (NM_001287527, exon 16 of 16) 3' UTR (NM_001287527, exon 16 of 16) 41886 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 491.25-2 chr4 45775849 45776232 + 2.5 NA Intergenic Intergenic 348014 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 318.75-6 chr18 42207810 42207977 + 2.5 NA intron (NR_046174, intron 1 of 9) L2a|LINE|L2 21225 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 352-4 chr2 49672088 49672387 + 2.5 NA Intergenic Intergenic 301966 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 215-40 chr6 157620320 157620463 + 2.5 NA intron (NM_024630, intron 3 of 8) MSTC|LTR|ERVL-MaLR 91259 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 378-2 chr17 74136864 74137027 + 2.5 NA Intergenic L1MEc|LINE|L1 -66733 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 471.25 chr4 94160671 94160978 + 2.5 NA intron (NR_125922, intron 5 of 8) L2c|LINE|L2 46732 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 281.25-4 chr13 42212499 42212702 + 2.5 NA intron (NM_001204506, intron 22 of 27) L3|LINE|CR1 -59552 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 333.5-4 chr17 5795469 5795722 + 2.5 NA intron (NR_040000, intron 1 of 3) MIRb|SINE|MIR 23361 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 333.5-3 chr14 24893814 24894034 + 2.5 NA intron (NM_001351943, intron 3 of 6) A-rich|Low_complexity|Low_complexity 155076 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 301-8 chr11 27052969 27053220 + 2.5 NA intron (NR_125768, intron 3 of 3) intron (NR_125768, intron 3 of 3) 12279 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 214-22 chr17 71087197 71087374 + 2.5 NA Intergenic L1MA5|LINE|L1 114894 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 178.5-58 chr4 98419625 98419743 + 2.5 NA intron (NM_021159, intron 10 of 14) intron (NM_021159, intron 10 of 14) 158300 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 322.5-22 chr5 101676574 101676712 + 2.5 NA Intergenic Intergenic 619641 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 419.5-3 chr4 181748518 181748740 + 2.5 NA Intergenic Intergenic 81344 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 287-5 chr18 7638847 7638973 + 2.5 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 71594 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 558.5 chr5 49666162 49666656 + 2.5 NA Intergenic (CATTC)n|Satellite|Satellite 774879 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 396.25 chr1 196640655 196640840 + 2.5 NA Intergenic Intergenic -11131 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 360.25 chr1 48360058 48360221 + 2.5 NA intron (NM_019073, intron 9 of 12) intron (NM_019073, intron 9 of 12) 112065 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 604.5 chr8 82872555 82872955 + 2.5 NA Intergenic L1M5|LINE|L1 -39349 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 539.5 chr3 98673397 98673754 + 2.5 NA Intergenic L1ME3A|LINE|L1 -58661 NM_001323353 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 517.75-2 chr8 106099245 106099575 + 2.5 NA Intergenic L1MA3|LINE|L1 -38907 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 325.5-7 chr2 147076499 147076702 + 2.5 NA Intergenic Intergenic 489543 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 306-13 chr19 42474128 42474314 + 2.5 NA intron (NR_073179, intron 1 of 1) L2c|LINE|L2 -31275 NR_133910 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 394.75-3 chr7 2249534 2249705 + 2.5 NA non-coding (NR_160264, exon 1 of 3) non-coding (NR_160264, exon 1 of 3) 308 NR_160264 4521 Hs.534331 NM_002452 ENSG00000106268 NUDT1 MTH1 nudix hydrolase 1 protein-coding 350.25-10 chr3 192389695 192389911 + 2.5 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 19246 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 361.5-7 chr6 160913510 160913957 + 2.5 NA Intergenic Intergenic -77994 NM_006724 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 250-3 chr1 216173916 216174141 + 2.5 NA TTS (NM_007123) TTS (NM_007123) 101563 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 484.5-3 chr4 146479956 146480255 + 2.5 NA intron (NM_032128, intron 4 of 4) intron (NM_032128, intron 4 of 4) 41835 NM_001300842 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 339-6 chr2 7662805 7663080 + 2.5 NA Intergenic L1ME4a|LINE|L1 236713 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 335.25-2 chr11 44341045 44341289 + 2.5 NA Intergenic Intergenic -31028 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 233.25-20 chr20 309325 309452 + 2.5 NA Intergenic MER115|DNA|hAT-Tip100 11818 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 350.5-3 chr12 29993543 29993758 + 2.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -208891 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 466.25 chr2 184128693 184129036 + 2.5 NA Intergenic Intergenic -250111 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 296-11 chr2 115227358 115227523 + 2.5 NA intron (NM_001321906, intron 2 of 26) L1ME1|LINE|L1 65285 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 335.75-8 chr9 114823329 114823485 + 2.5 NA Intergenic Intergenic -17368 NM_005118 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 406.75-2 chr7 27999644 27999815 + 2.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -180728 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 347.5 chr10 12251869 12252080 + 2.5 NA Intergenic Intergenic 55786 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 459-2 chr3 105208221 105208463 + 2.5 NA Intergenic Intergenic -158371 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 256-5 chr10 33018875 33019052 + 2.5 NA Intergenic MIRc|SINE|MIR -60733 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 379.5 chr1 240265219 240265440 + 2.5 NA intron (NM_020066, intron 7 of 17) intron (NM_020066, intron 7 of 17) 173446 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 227.5-41 chr4 145334303 145334416 + 2.5 NA TTS (NR_147156) TTS (NR_147156) 6060 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 313.75-7 chr5 153083206 153083446 + 2.5 NA Intergenic L1ME3Cz|LINE|L1 -110977 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 234-35 chr6 90230442 90230540 + 2.5 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 66352 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 209.5-45 chr6 150525086 150525208 + 2.5 NA Intergenic Intergenic -74738 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 538.75 chr2 28893123 28893441 + 2.5 NA Intergenic Intergenic -1385 NM_015131 23160 Hs.622982 NM_015131 ENSG00000163811 WDR43 NET12|UTP5 WD repeat domain 43 protein-coding 287-17 chr5 171440014 171440201 + 2.5 NA intron (NM_003862, intron 3 of 4) MIR|SINE|MIR 20460 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 265-27 chr8 82431567 82431722 + 2.5 NA Intergenic (TATTATA)n|Simple_repeat|Simple_repeat -480460 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 274.75-5 chr15 56777993 56778256 + 2.5 NA Intergenic Intergenic -44038 NM_001002843 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 355-12 chrX 95632314 95632522 + 2.5 NA Intergenic LOR1-int|LTR|ERV1 -569192 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 260-17 chr2 226901799 226901972 + 2.5 NA intron (NM_001349069, intron 5 of 8) intron (NM_001349069, intron 5 of 8) 65831 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 397.5-8 chr6 156375523 156375782 + 2.5 NA Intergenic Intergenic -3098 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 502.25-2 chr7 62559952 62560159 + 2.5 NA Intergenic ALR/Alpha|Satellite|centr 744001 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 321.75-8 chr2 9588329 9588625 + 2.5 NA intron (NM_006826, intron 3 of 5) intron (NM_006826, intron 3 of 5) -32647 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 383-2 chr15 51401201 51401453 + 2.5 NA intron (NM_001330297, intron 8 of 9) intron (NM_001330297, intron 8 of 9) 24081 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 285.25-3 chr10 15401226 15401410 + 2.5 NA Intergenic L1MA2|LINE|L1 -30029 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 409.5-2 chr13 26167660 26167926 + 2.5 NA intron (NM_183045, intron 5 of 5) L1PREC2|LINE|L1 53964 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 340-11 chr8 83661282 83661468 + 2.5 NA Intergenic Intergenic 257617 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 306-9 chr14 66829227 66829430 + 2.5 NA intron (NM_001024218, intron 4 of 21) AluSz6|SINE|Alu 321921 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 546.75-2 chr9 23341185 23341580 + 2.5 NA Intergenic Intergenic 331017 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 286.25-8 chr2 75235835 75236022 + 2.5 NA Intergenic Intergenic -36408 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 351-10 chr7 11262325 11262584 + 2.5 NA Intergenic Intergenic 288582 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 420 chr13 22692321 22692498 + 2.5 NA Intergenic L1ME3A|LINE|L1 205772 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 264.25-19 chrM 14235 14584 + 2.5 NA Intergenic Intergenic -6895 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 429-8 chr6 166651851 166652365 + 2.5 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -24857 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 219.5-42 chr5 148025256 148025429 + 2.5 NA Intergenic Intergenic -38630 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 235-7 chr12 109778104 109778228 + 2.5 NA Intergenic MER113|DNA|hAT-Charlie -4679 NR_026661 84983 Hs.675961 NM_032897 ENSG00000255650 FAM222A-AS1 - FAM222A antisense RNA 1 ncRNA 428.5-2 chr2 193921980 193922204 + 2.5 NA Intergenic Intergenic -422177 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 320.5-2 chr10 54323677 54323951 + 2.5 NA intron (NM_001142767, intron 6 of 30) L1PA16|LINE|L1 -162416 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 285-25 chrX 103520188 103520397 + 2.5 NA promoter-TSS (NM_080879) promoter-TSS (NM_080879) -803 NM_080879 142684 Hs.706904 NM_080879 ENSG00000172476 RAB40A RAR2|RAR2A RAB40A, member RAS oncogene family protein-coding 422.5 chr12 27543098 27543416 + 2.5 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 19051 NM_003622 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 273.25-4 chr16 62939363 62939549 + 2.5 NA Intergenic Intergenic -903018 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 259.5-3 chr1 218865441 218865604 + 2.5 NA intron (NR_031644, intron 6 of 6) (ATGT)n|Simple_repeat|Simple_repeat 52989 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 254.25-13 chr21 15680637 15681107 + 2.5 NA Intergenic AluJb|SINE|Alu -49062 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 388.75-2 chr3 24190959 24191316 + 2.5 NA intron (NM_001354714, intron 2 of 8) intron (NM_001354714, intron 2 of 8) 39813 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 283.75-4 chr18 4451350 4451485 + 2.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 3849 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 301.25-12 chr8 121307560 121307715 + 2.5 NA Intergenic Intergenic -331709 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 347.25-6 chr3 79751050 79751342 + 2.5 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 16802 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 427.5-2 chr14 40128523 40128755 + 2.5 NA Intergenic Intergenic -696139 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 274 chr1 20777805 20777924 + 2.5 NA intron (NM_016287, intron 3 of 12) intron (NM_016287, intron 3 of 12) 8824 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 531 chr4 78327457 78327776 + 2.5 NA intron (NM_001166133, intron 18 of 41) intron (NM_001166133, intron 18 of 41) 38631 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 290-21 chr9 29790763 29790927 + 2.5 NA Intergenic L1ME2|LINE|L1 -577244 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 271-12 chr2 37059693 37059834 + 2.5 NA intron (NM_019024, intron 12 of 35) (TA)n|Simple_repeat|Simple_repeat 24609 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 427-3 chr5 101698254 101698445 + 2.5 NA Intergenic Intergenic 597935 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 259.5-22 chr5 91859652 91859886 + 2.5 NA Intergenic Intergenic -476452 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 204-42 chr8 142190434 142190521 + 2.5 NA Intergenic Intergenic -7879 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 253.5-46 chr9 88322733 88322846 + 2.5 NA Intergenic Intergenic -65655 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 348.5-6 chr4 35608141 35608293 + 2.5 NA Intergenic Intergenic 635722 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 339-5 chr19 27691319 27691493 + 2.5 NA Intergenic HSAT4|Satellite|centr -102025 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 474-2 chr6 134746824 134747149 + 2.5 NA Intergenic MIRb|SINE|MIR 203115 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 387-3 chr12 17585835 17586124 + 2.5 NA intron (NR_146522, intron 2 of 4) intron (NR_146522, intron 2 of 4) 3099 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 436.5-3 chr21 30896141 30896330 + 2.5 NA Intergenic Intergenic -14655 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 281.25-18 chr9 35545932 35546128 + 2.5 NA intron (NM_001135999, intron 1 of 11) intron (NM_001135999, intron 1 of 11) 7398 NM_001135999 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 229.25-16 chr20 52831032 52831146 + 2.5 NA Intergenic Intergenic -141269 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 410 chr1 56959172 56959430 + 2.5 NA intron (NM_000066, intron 2 of 11) L2c|LINE|L2 6714 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 402.25-3 chr21 28442829 28443135 + 2.5 NA Intergenic Intergenic -96336 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 228.5-8 chr12 41971536 41971802 + 2.5 NA Intergenic Intergenic 173205 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 323-8 chr14 68042213 68042409 + 2.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 218719 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 343-2 chr14 38395164 38395439 + 2.5 NA Intergenic Intergenic -139208 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 266 chr1 163145767 163145978 + 2.5 NA 3' UTR (NM_003617, exon 5 of 5) 3' UTR (NM_003617, exon 5 of 5) -15803 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 277.75-3 chr10 16965352 16965536 + 2.5 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) -147990 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 403-3 chr16 6782971 6783158 + 2.5 NA intron (NM_001142334, intron 1 of 13) L1MA4|LINE|L1 9255 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 343 chr13 92589685 92589887 + 2.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 99623 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 180.25-51 chr5 16184799 16184917 + 2.5 NA non-coding (NR_149044, exon 2 of 2) non-coding (NR_149044, exon 2 of 2) 4617 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 668.25 chr10 43656817 43657448 + 2.5 NA intron (NR_038867, intron 1 of 4) L1PA6|LINE|L1 -8251 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 395.25-2 chr1 216790003 216790379 + 2.5 NA intron (NM_001243513, intron 1 of 7) MLT1J1|LTR|ERVL-MaLR 15194 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 422-2 chr2 122295351 122295572 + 2.5 NA Intergenic Intergenic 539810 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 291.5-7 chr20 5414425 5414628 + 2.5 NA Intergenic Intergenic 31222 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 376.75-2 chr14 91471391 91471591 + 2.5 NA intron (NM_001284281, intron 7 of 12) intron (NM_001284281, intron 7 of 12) 38213 NM_001366432 55671 Hs.533887 NM_017936 ENSG00000100796 PPP4R3A FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1 protein phosphatase 4 regulatory subunit 3A protein-coding 429-3 chr11 98728859 98729243 + 2.5 NA Intergenic Intergenic -291898 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 316.5 chr1 185945281 185945499 + 2.5 NA intron (NM_031935, intron 11 of 106) intron (NM_031935, intron 11 of 106) 210999 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 288.25-17 chr8 127324144 127324413 + 2.5 NA intron (NR_117099, intron 2 of 3) MSTB|LTR|ERVL-MaLR -76121 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 348.5-2 chr10 32016753 32016940 + 2.5 NA intron (NM_004521, intron 24 of 25) intron (NM_004521, intron 24 of 25) 39579 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 543.5 chr19 29110955 29111268 + 2.5 NA Intergenic MIRc|SINE|MIR 102040 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 367 chr2 79404837 79405123 + 2.5 NA Intergenic L1MB8|LINE|L1 95864 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 313.25-3 chr2 22785379 22785647 + 2.5 NA Intergenic Intergenic 249034 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 277.25-24 chr5 118342699 118343018 + 2.5 NA Intergenic Intergenic 60284 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 340-9 chr6 104430477 104430698 + 2.5 NA Intergenic L1ME2|LINE|L1 428959 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 345-15 chrX 78278463 78278712 + 2.5 NA intron (NM_001282186, intron 1 of 1) L1PA16|LINE|L1 49024 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 445-2 chr3 95958298 95958567 + 2.5 NA Intergenic Intergenic -275239 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 405.5-4 chr2 51230620 51230837 + 2.5 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 198127 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 350.25-13 chr9 36474338 36474657 + 2.5 NA Intergenic Intergenic -73299 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 368 chr12 128023982 128024141 + 2.5 NA intron (NR_131985, intron 2 of 2) intron (NR_131985, intron 2 of 2) 3105 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 509.25 chr2 231444018 231444632 + 2.5 NA Intergenic L1ME2|LINE|L1 11611 NR_002921 654321 Hs.674388 NR_002921 ENSG00000206885 SNORA75 SNORA75A|U23 small nucleolar RNA, H/ACA box 75 snoRNA 480-2 chr8 115515553 115515883 + 2.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 152295 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 331.25-2 chr2 140603594 140603796 + 2.5 NA intron (NM_018557, intron 41 of 90) intron (NM_018557, intron 41 of 90) -17010 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 458.75 chr19 28361887 28362075 + 2.5 NA Intergenic Intergenic -244707 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 275.5-19 chr22 26323195 26323321 + 2.5 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -106002 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 345.5-2 chr14 47429318 47429705 + 2.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -86265 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 473-2 chr21 29736506 29736813 + 2.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -11516 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 269.75-7 chr15 23918562 23918898 + 2.5 NA Intergenic L1MCa|LINE|L1 -56417 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 305-16 chr4 89804153 89804418 + 2.5 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -32116 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 459 chr2 129591254 129591538 + 2.5 NA Intergenic L1MD2|LINE|L1 286095 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 602.5 chr8 108077961 108078293 + 2.5 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 3812 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 328-5 chr3 186303274 186303486 + 2.5 NA intron (NM_001346, intron 3 of 24) intron (NM_001346, intron 3 of 24) 58854 NM_001080744 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 545 chr4 39157781 39158114 + 2.5 NA Intergenic Intergenic -24582 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 198-47 chr8 67486327 67486421 + 2.5 NA intron (NM_020361, intron 6 of 10) Tigger3d|DNA|TcMar-Tigger 142540 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 490 chr11 93961427 93961922 + 2.5 NA Intergenic MIR3|SINE|MIR -59680 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 476.25 chr12 113475455 113475832 + 2.5 NA intron (NR_126425, intron 1 of 1) intron (NR_126425, intron 1 of 1) 3640 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 307.5 chr1 31216083 31216460 + 2.5 NA intron (NM_024522, intron 1 of 6) intron (NM_024522, intron 1 of 6) 23616 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 356.25-9 chr5 26046525 26046709 + 2.5 NA Intergenic L1PA17|LINE|L1 855664 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 316-2 chr1 162228302 162228443 + 2.5 NA intron (NM_014697, intron 2 of 9) L1MEg|LINE|L1 71265 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 503.75 chr21 14390774 14391174 + 2.5 NA Intergenic L1MEg|LINE|L1 -7828 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 245-19 chr3 101376937 101377085 + 2.5 NA intron (NM_001282803, intron 3 of 20) intron (NM_001282803, intron 3 of 20) -56436 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 337.5-3 chr18 23904080 23904229 + 2.5 NA intron (NM_001127717, intron 49 of 73) intron (NM_001127717, intron 49 of 73) 31134 NM_000227 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 385-2 chr11 58727477 58727750 + 2.5 NA intron (NM_201648, intron 1 of 5) MER50-int|LTR|ERV1 4330 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 301-14 chr16 78503671 78503821 + 2.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 404092 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 200.5-40 chr21 29251432 29251537 + 2.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -47438 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 259-27 chr5 31431737 31431925 + 2.5 NA intron (NM_013235, intron 24 of 34) intron (NM_013235, intron 24 of 34) 100262 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 375.25 chr12 20572017 20572185 + 2.5 NA 5' UTR (NM_001244683, exon 1 of 15) 5' UTR (NM_001244683, exon 1 of 15) 237 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 497.25 chr11 103869323 103869567 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL 19539 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 221.5-52 chr9 7987268 7987472 + 2.5 NA Intergenic Intergenic -187592 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 419-5 chr6 75846124 75846369 + 2.5 NA intron (NM_001300899, intron 10 of 32) intron (NM_001300899, intron 10 of 32) 97007 NM_001368865 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 396.25-2 chr12 3381658 3381876 + 2.5 NA intron (NM_001256536, intron 1 of 9) L1MD1|LINE|L1 418 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 314 chr1 173798340 173798556 + 2.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 25684 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 308-3 chr12 39391495 39391715 + 2.5 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 51515 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 471.5-2 chr8 116116008 116116330 + 2.5 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 208890 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 363.5-10 chr8 129357578 129358086 + 2.5 NA intron (NR_130920, intron 3 of 3) intron (NR_130920, intron 3 of 3) -116592 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 439 chr15 57280193 57280458 + 2.5 NA intron (NM_207038, intron 18 of 19) intron (NM_207038, intron 18 of 19) -1668 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 400-2 chr1 199208452 199208695 + 2.5 NA intron (NR_147896, intron 3 of 3) Tigger2|DNA|TcMar-Tigger 59975 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 432.25 chr20 54237829 54238075 + 2.5 NA Intergenic Intergenic 29865 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 335-5 chr21 16835684 16835966 + 2.5 NA Intergenic L1MEf|LINE|L1 245588 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 254.5-16 chr20 31063048 31063242 + 2.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -194519 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 402-2 chr5 18661582 18662002 + 2.5 NA Intergenic Intergenic 854518 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 486-3 chr7 159003771 159004256 + 2.5 NA Intergenic L1MC|LINE|L1 -4341 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 295.5-16 chr21 32090301 32090522 + 2.5 NA Intergenic Intergenic -4116 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 406-2 chr14 60862541 60862782 + 2.5 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 118418 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 737.75 chr22 25653635 25654358 + 2.5 NA intron (NM_005160, intron 3 of 20) L1MEg|LINE|L1 -88192 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 316.5-7 chr2 29912166 29912326 + 2.5 NA intron (NM_004304, intron 1 of 28) L1MEf|LINE|L1 9340 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 472.5-4 chr5 27629912 27630117 + 2.5 NA Intergenic Intergenic 157722 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 356-3 chr3 118193264 118193467 + 2.5 NA Intergenic L1M2|LINE|L1 -448403 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 408-2 chr15 69255226 69255456 + 2.5 NA intron (NM_001324092, intron 2 of 3) Tigger4a|DNA|TcMar-Tigger -43571 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 302.75-5 chr22 28299830 28300069 + 2.5 NA intron (NM_001145418, intron 3 of 22) MLT1N2|LTR|ERVL-MaLR -159920 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 309-4 chr11 18094151 18094296 + 2.5 NA intron (NM_138421, intron 3 of 11) intron (NM_138421, intron 3 of 11) 11859 NM_138421 113174 Hs.591998 NM_138421 ENSG00000166788 SAAL1 SPACIA1 serum amyloid A like 1 protein-coding 388.75 chr2 118591865 118592073 + 2.5 NA Intergenic Intergenic 10997 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 391-4 chr20 52349856 52350081 + 2.5 NA Intergenic Intergenic -157983 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 289-16 chr7 32023112 32023243 + 2.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 47230 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 449.25-3 chr8 135988715 135989025 + 2.5 NA Intergenic Intergenic 531414 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 224-29 chr7 77762442 77762584 + 2.5 NA intron (NM_198467, intron 3 of 7) intron (NM_198467, intron 3 of 7) 35921 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 276-4 chr14 84610858 84611104 + 2.5 NA Intergenic Intergenic -660951 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 310.25-2 chr11 4925026 4925183 + 2.5 NA promoter-TSS (NM_001005237) promoter-TSS (NM_001005237) -765 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 186.5-21 chr14 59579224 59579329 + 2.5 NA Intergenic L1ME4a|LINE|L1 -2464 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 321-10 chr3 106432961 106433100 + 2.5 NA Intergenic Intergenic -563629 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 283-3 chr10 12664876 12665046 + 2.5 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -11764 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 658 chr20 41753077 41753727 + 2.5 NA Intergenic Intergenic -135025 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 521.25 chr2 40697630 40698020 + 2.5 NA Intergenic L2b|LINE|L2 -185390 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 508.75 chr10 111877038 111877425 + 2.5 NA Intergenic LTR37A|LTR|ERV1 306534 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 475.5-2 chr2 13086329 13086681 + 2.5 NA Intergenic MER4-int|LTR|ERV1 -79492 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 221-48 chr8 99289900 99290009 + 2.5 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 246776 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 334-6 chr4 40160192 40160422 + 2.5 NA Intergenic MER47B|DNA|TcMar-Tigger -30773 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 299-17 chr7 47315771 47316013 + 2.5 NA intron (NM_022748, intron 20 of 30) intron (NM_022748, intron 20 of 30) 148911 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 231.5-14 chr17 19450042 19450204 + 2.5 NA Intergenic Intergenic 38891 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 371.25-3 chr5 72900433 72900649 + 2.5 NA intron (NM_001364293, intron 21 of 24) intron (NM_001364293, intron 21 of 24) 21950 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 365-8 chr8 120163722 120163932 + 2.5 NA intron (NM_021110, intron 4 of 47) intron (NM_021110, intron 4 of 47) 38725 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 246.5-21 chr7 20240259 20240432 + 2.5 NA Intergenic Intergenic 22768 NR_134567 100506098 Hs.59203 NR_134567 ENSG00000233834 LOC100506098 - uncharacterized LOC100506098 ncRNA 439-5 chr9 28935359 28935656 + 2.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -46552 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 366-7 chr2 63783728 63783944 + 2.5 NA Intergenic L1PB4|LINE|L1 -57128 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 463.25-4 chr6 66855792 66855991 + 2.5 NA Intergenic L1MA9|LINE|L1 1068012 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 524 chr2 224166658 224166953 + 2.5 NA Intergenic Intergenic -127486 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 301.5-11 chr21 28743681 28743894 + 2.5 NA Intergenic Intergenic 141580 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 369-2 chr11 123629050 123629226 + 2.5 NA TTS (NM_018400) TTS (NM_018400) 25469 NM_001040151 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 420.75-4 chr9 104052515 104052828 + 2.5 NA Intergenic L1MEd|LINE|L1 39803 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 473.5-2 chr8 120520645 120520965 + 2.5 NA intron (NM_022045, intron 20 of 21) HAL1|LINE|L1 75386 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 390.75-6 chr4 111016788 111017227 + 2.5 NA Intergenic Intergenic -156360 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 380.5-3 chr17 68894103 68894317 + 2.5 NA exon (NM_007168, exon 21 of 38) exon (NM_007168, exon 21 of 38) 61182 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 316.75-2 chr14 42125964 42126124 + 2.5 NA Intergenic L1PA12|LINE|L1 519188 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 221.25-26 chr4 156321538 156321705 + 2.5 NA Intergenic Intergenic -367755 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 580-2 chr8 131029337 131029708 + 2.5 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 11387 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 317.5-6 chr18 38597909 38598244 + 2.5 NA Intergenic Intergenic 940941 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 324.5-11 chr21 30372945 30373229 + 2.5 NA promoter-TSS (NM_181621) promoter-TSS (NM_181621) -816 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 409-7 chr9 100095223 100095600 + 2.5 NA intron (NM_015051, intron 1 of 11) L1MC5|LINE|L1 3589 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 307.25 chr1 77364436 77364658 + 2.5 NA intron (NM_012093, intron 6 of 13) L1MA5A|LINE|L1 81460 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 428.5-4 chr21 32245509 32245766 + 2.5 NA Intergenic LTR85b|LTR|Gypsy? 33412 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 366 chr1 55703114 55703368 + 2.5 NA Intergenic MIRc|SINE|MIR 241722 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 303.25-2 chr10 118029949 118030161 + 2.5 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -16766 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 226-29 chr7 41392079 41392174 + 2.5 NA Intergenic Intergenic 290522 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 332.75-8 chr9 95951577 95951715 + 2.5 NA intron (NM_020207, intron 12 of 18) L1M4|LINE|L1 70165 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 255.75-19 chr5 12066622 12066889 + 2.5 NA Intergenic Intergenic -162309 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 465.5-2 chr7 88304959 88305265 + 2.5 NA intron (NM_001205315, intron 1 of 5) intron (NM_001205315, intron 1 of 5) 1782 NM_001205315 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 253.75-16 chr6 16638622 16638762 + 2.5 NA intron (NM_000332, intron 4 of 8) intron (NM_000332, intron 4 of 8) 121492 NR_152113 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 448.75 chr5 159547941 159548176 + 2.5 NA Intergenic L1M5|LINE|L1 -81782 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 294.25-7 chr2 40149844 40150009 + 2.5 NA intron (NM_001351483, intron 7 of 8) intron (NM_001351483, intron 7 of 8) 232292 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 182.5-56 chr5 57754490 57754622 + 2.5 NA Intergenic Intergenic 103896 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 280.5-8 chr14 55267700 55267864 + 2.5 NA Intergenic Intergenic -3639 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 272-16 chr2 62930976 62931160 + 2.5 NA intron (NM_001142615, intron 10 of 22) L1MB2|LINE|L1 116643 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 533 chr12 15183414 15183774 + 2.5 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 31671 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 280-22 chr6 147041485 147041717 + 2.5 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -117324 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 297.5-2 chr12 121398850 121399031 + 2.5 NA Intergenic Intergenic -1143 NM_001256858 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 592 chr4 40281072 40281563 + 2.5 NA Intergenic Charlie8|DNA|hAT-Charlie -25868 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 322.5-14 chr3 4464850 4465162 + 2.5 NA intron (NM_001164674, intron 1 of 7) intron (NM_001164674, intron 1 of 7) 2263 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 188-8 chr12 41231540 41231659 + 2.5 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 43279 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 544 chr11 19849655 19849996 + 2.5 NA intron (NM_182964, intron 3 of 37) intron (NM_182964, intron 3 of 37) -89742 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 292-3 chr12 76073744 76073920 + 2.5 NA intron (NM_001330231, intron 2 of 15) intron (NM_001330231, intron 2 of 15) 10853 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 527 chr12 19137340 19137572 + 2.5 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) 7723 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 424 chr11 33355442 33355687 + 2.5 NA 3' UTR (NM_005734, exon 17 of 17) 3' UTR (NM_005734, exon 17 of 17) -20544 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 454.5 chr12 42005451 42005691 + 2.5 NA Intergenic Intergenic 139303 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 258.25-14 chr2 216023942 216024222 + 2.5 NA Intergenic Intergenic -10531 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 389.5 chr12 61347079 61347319 + 2.5 NA Intergenic Intergenic 845640 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 232.25-23 chr5 45620766 45620895 + 2.5 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 75550 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 355.25-7 chr8 26891877 26892036 + 2.5 NA Intergenic L1MC5a|LINE|L1 -24678 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 331-3 chr12 10510987 10511187 + 2.5 NA intron (NM_001357731, intron 1 of 1) intron (NM_001357731, intron 1 of 1) 5194 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 478 chr14 59969387 59969781 + 2.5 NA intron (NR_075071, intron 12 of 32) intron (NR_075071, intron 12 of 32) 49871 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 284.5-14 chr15 83317640 83317862 + 2.5 NA Intergenic L1M6|LINE|L1 -33087 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 341.25-9 chr5 68635821 68635984 + 2.5 NA Intergenic Intergenic 343325 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 344.5-5 chr20 17105257 17105481 + 2.5 NA Intergenic Intergenic -120738 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 452 chr2 200014321 200014632 + 2.5 NA Intergenic Intergenic -58985 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 257.75-27 chrX 66382365 66382540 + 2.5 NA Intergenic Intergenic 214702 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 353.75-2 chr17 66722817 66722996 + 2.5 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -64166 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 240.5-40 chr5 85937302 85937417 + 2.5 NA Intergenic Intergenic -345085 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 308-2 chr11 80098732 80098935 + 2.5 NA Intergenic L2b|LINE|L2 -657803 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 219-43 chr9 88728170 88728329 + 2.5 NA Intergenic Intergenic 17656 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 265.25-24 chr7 8213122 8213320 + 2.5 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 48831 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 236.25-35 chr6 43005219 43005400 + 2.5 NA intron (NM_006245, intron 2 of 15) AluJr|SINE|Alu 8637 NM_014623 4201 Hs.278362 NM_014623 ENSG00000124733 MEA1 HYS|MEA male-enhanced antigen 1 protein-coding 257.75-17 chr3 143693957 143694105 + 2.5 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 154437 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 606.5 chr18 54863746 54864048 + 2.5 NA intron (NM_004163, intron 1 of 5) L1MB7|LINE|L1 35420 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 181-27 chr2 12519847 12519947 + 2.5 NA intron (NR_110196, intron 4 of 5) L1MEi|LINE|L1 -196975 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 245-28 chr4 139520504 139520638 + 2.5 NA intron (NM_001306199, intron 5 of 7) intron (NM_001306199, intron 5 of 7) 36198 NR_131339 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 387.5-8 chr7 53024577 53024850 + 2.5 NA Intergenic MER5A|DNA|hAT-Charlie -10920 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 402.75-3 chr5 117705176 117705387 + 2.5 NA Intergenic MamGypsy2-I|LTR|Gypsy -25080 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 319 chr10 21971253 21971437 + 2.5 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 32385 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 231.5-10 chr14 37450670 37450851 + 2.5 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 144489 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 494-3 chr8 131191238 131191493 + 2.5 NA Intergenic Intergenic -150456 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 310-25 chr8 112735895 112736086 + 2.5 NA intron (NM_001363185, intron 11 of 66) L4_B_Mam|LINE|RTE-X 92497 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 291-6 chr14 85504541 85504703 + 2.5 NA Intergenic Intergenic -25403 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 306.25-3 chr11 86658891 86659092 + 2.5 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 13207 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 350 chr1 118583456 118583652 + 2.5 NA Intergenic Intergenic -398326 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 462.5 chr5 18688133 18688453 + 2.5 NA Intergenic Intergenic 881019 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 352.75-6 chr7 127081140 127081378 + 2.5 NA intron (NM_001371085, intron 3 of 10) L2c|LINE|L2 -23075 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 313.5-3 chr14 33065364 33065632 + 2.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 126619 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 402.5-2 chr15 74770021 74770243 + 2.5 NA Intergenic MIRb|SINE|MIR -11948 NM_001127190 1445 Hs.77793 NM_004383 ENSG00000103653 CSK - C-terminal Src kinase protein-coding 438.75 chr7 27700113 27700322 + 2.5 NA Intergenic Intergenic -37334 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 564.75 chr14 69495865 69496179 + 2.5 NA intron (NM_001161498, intron 1 of 12) L2a|LINE|L2 11294 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 340.75-10 chr4 108644052 108644258 + 2.5 NA Intergenic ERVL-E-int|LTR|ERVL -6430 NM_001267817 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 329-6 chr3 117747958 117748164 + 2.5 NA Intergenic Intergenic -57136 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 295-10 chr4 103664496 103664664 + 2.5 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 55405 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 382.5-2 chr10 62182220 62182448 + 2.5 NA Intergenic L2a|LINE|L2 86510 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 297.5 chr1 237340650 237340836 + 2.5 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -130376 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 348.5-8 chr8 47082635 47082798 + 2.5 NA Intergenic MER57-int|LTR|ERV1 -106591 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 241.5-42 chr9 90051176 90051310 + 2.5 NA Intergenic L1MDa|LINE|L1 -9744 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 242.5-39 chr9 21470877 21471006 + 2.5 NA intron (NR_152878, intron 2 of 2) LTR81C|LTR|Gypsy 11372 NM_176891 338376 Hs.682604 NM_176891 ENSG00000184995 IFNE IFN-E|IFNE1|IFNT1|INFE1|PRO655 interferon epsilon protein-coding 742.5 chr2 62674427 62674789 + 2.5 NA intron (NM_001142615, intron 1 of 22) Charlie20a|DNA|hAT-Charlie 730 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 432.75-3 chr11 12777620 12777875 + 2.25 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 103326 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 247.5-6 chr12 62078855 62079084 + 2.25 NA intron (NM_178539, intron 1 of 4) LTR88a|LTR|Gypsy? 113870 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 255.5-9 chr16 76669593 76669725 + 2.25 NA Intergenic L1MB7|LINE|L1 34661 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 411.75-3 chr10 48700798 48701067 + 2.25 NA intron (NM_020945, intron 1 of 61) L1MB3|LINE|L1 15469 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 269.25-3 chr12 64861870 64862098 + 2.25 NA intron (NM_001364838, intron 8 of 11) L3|LINE|CR1 -21790 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 294.25 chr1 156730785 156731042 + 2.25 NA intron (NM_015997, intron 1 of 7) MIR|SINE|MIR -2147 NM_001370150 81875 Hs.301904 NM_030980 ENSG00000143319 ISG20L2 HSD38 interferon stimulated exonuclease gene 20 like 2 protein-coding 221.5-53 chr9 35228131 35228330 + 2.25 NA intron (NM_006377, intron 2 of 38) intron (NM_006377, intron 2 of 38) 66221 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 195.5-7 chr1 181664879 181665017 + 2.25 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 181431 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 222.5-28 chr20 48222311 48222508 + 2.25 NA Intergenic AluJb|SINE|Alu -137502 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 312.25-10 chr6 142680703 142681091 + 2.25 NA Intergenic L2c|LINE|L2 -43008 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 349-11 chr6 147868167 147868418 + 2.25 NA Intergenic Intergenic 359602 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 276-20 chr8 68653862 68654110 + 2.25 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -322495 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 177.25-21 chr2 37351361 37351511 + 2.25 NA intron (NM_012413, intron 1 of 6) intron (NM_012413, intron 1 of 6) 6806 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 350.25-2 chr14 85773339 85773589 + 2.25 NA Intergenic L1ME1|LINE|L1 -161214 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 415.75-6 chr4 87720565 87720946 + 2.25 NA Intergenic Intergenic 70475 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 309-8 chr16 55374354 55374616 + 2.25 NA Intergenic Intergenic 49926 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 235-43 chrY 11303390 11303518 + 2.25 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1118136 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 205.5-42 chr3 189483638 189483794 + 2.25 NA Intergenic L1MC3|LINE|L1 -113030 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 390.25 chr1 106301112 106301472 + 2.25 NA Intergenic L1MEi|LINE|L1 -273039 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 308.25-5 chr21 39615745 39615979 + 2.25 NA intron (NM_001278650, intron 1 of 2) intron (NM_001278650, intron 1 of 2) 2922 NM_001356336 10317 Hs.733638 NM_006057 ENSG00000183778 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 beta-1,3-galactosyltransferase 5 protein-coding 348.75 chr1 45297142 45297422 + 2.25 NA Intergenic MIR3|SINE|MIR -6628 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 459.75-2 chr8 123292910 123293252 + 2.25 NA Intergenic Intergenic -17540 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 408.75-2 chr8 138183224 138183507 + 2.25 NA intron (NM_015912, intron 9 of 19) MIR|SINE|MIR -99820 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 397.5-6 chr5 19167868 19168051 + 2.25 NA Intergenic Intergenic 718313 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 169-11 chr12 3814467 3814550 + 2.25 NA intron (NM_020367, intron 6 of 7) intron (NM_020367, intron 6 of 7) 58891 NM_020367 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 473.75-2 chr2 114583942 114584263 + 2.25 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 122525 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 295.75 chr1 187475159 187475348 + 2.25 NA intron (NR_132374, intron 2 of 2) intron (NR_132374, intron 2 of 2) 31625 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 304.5-12 chr3 186160933 186161139 + 2.25 NA intron (NM_001346, intron 24 of 24) intron (NM_001346, intron 24 of 24) -51947 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 292-15 chr7 89272626 89272829 + 2.25 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -476990 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 336.5-2 chr14 83908856 83909191 + 2.25 NA Intergenic L2c|LINE|L2 1266391 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 331.5-8 chrX 48548504 48548830 + 2.25 NA intron (NR_145500, intron 3 of 4) L1ME3G|LINE|L1 8953 NM_002536 4943 Hs.694353 NM_002536 ENSG00000068354 TBC1D25 MG81|OATL1 TBC1 domain family member 25 protein-coding 242.5-16 chr2 136555824 136555975 + 2.25 NA Intergenic L1MA7|LINE|L1 -209646 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 290.25-5 chr14 54549471 54549729 + 2.25 NA Intergenic Intergenic -18012 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 357.75-7 chr17 69892278 69892492 + 2.25 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -69322 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 273-3 chr10 74169632 74169805 + 2.25 NA intron (NM_001369123, intron 1 of 9) intron (NM_001369123, intron 1 of 9) -6771 NM_001123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 158.25-11 chr11 82172534 82172667 + 2.25 NA intron (NR_120571, intron 3 of 7) L2a|LINE|L2 231313 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 334-3 chr12 123718961 123719238 + 2.25 NA intron (NM_012463, intron 2 of 19) intron (NM_012463, intron 2 of 19) 6746 NM_012463 23545 Hs.25786 NM_012463 ENSG00000185344 ATP6V0A2 A2|ARCL|ARCL2A|ATP6A2|ATP6N1D|J6B7|RTF|STV1|TJ6|TJ6M|TJ6S|VPH1|WSS ATPase H+ transporting V0 subunit a2 protein-coding 208-23 chr20 58282246 58282417 + 2.25 NA intron (NR_003505, intron 3 of 16) L1MC5a|LINE|L1 27108 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 350.75-4 chr2 69621599 69621843 + 2.25 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) 22018 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 268-19 chr4 19736008 19736220 + 2.25 NA Intergenic AluSz|SINE|Alu -515791 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 243-4 chr1 212290012 212290193 + 2.25 NA intron (NM_006243, intron 1 of 12) intron (NM_006243, intron 1 of 12) 4692 NM_006243 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 198.75-50 chr8 135174716 135174868 + 2.25 NA Intergenic L2a|LINE|L2 -59339 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 327-15 chr8 120961828 120962040 + 2.25 NA Intergenic L1MB7|LINE|L1 -149888 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 318.5-18 chrX 143132923 143133266 + 2.25 NA Intergenic L1M7|LINE|L1 107166 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 263-5 chr11 34201349 34201535 + 2.25 NA intron (NM_145804, intron 2 of 16) intron (NM_145804, intron 2 of 16) 95813 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 322-10 chr8 81906742 81907024 + 2.25 NA Intergenic L2c|LINE|L2 -64597 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 298.75-5 chr2 79532420 79532597 + 2.25 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 9325 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 244.75-28 chr8 137016233 137016426 + 2.25 NA Intergenic L1MEc|LINE|L1 397259 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 347.25-7 chr4 32148947 32149202 + 2.25 NA intron (NR_125936, intron 2 of 2) intron (NR_125936, intron 2 of 2) -126652 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 473.75 chr17 63027183 63027467 + 2.25 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 61090 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 185.75-3 chr1 234579536 234579674 + 2.25 NA Intergenic Intergenic 29920 NM_182972 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 489 chr10 47175865 47176123 + 2.25 NA Intergenic Intergenic -124203 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 275.25-7 chr14 65850748 65850954 + 2.25 NA Intergenic Intergenic 379749 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 252.25-4 chr13 30281105 30281277 + 2.25 NA intron (NM_032116, intron 2 of 10) intron (NM_032116, intron 2 of 10) 25820 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 307-5 chr2 118520439 118520826 + 2.25 NA Intergenic Intergenic 82334 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 235.5-27 chr2 135454200 135454366 + 2.25 NA intron (NM_001286569, intron 2 of 21) THE1A|LTR|ERVL-MaLR 76302 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 275.75-8 chr13 29031764 29031968 + 2.25 NA intron (NM_001033602, intron 1 of 13) intron (NM_001033602, intron 1 of 13) 7409 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 320.25-8 chr20 33225880 33226053 + 2.25 NA intron (NM_178466, intron 4 of 6) L2c|LINE|L2 8614 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 226.5-13 chr12 46282346 46282469 + 2.25 NA Intergenic L1MA4|LINE|L1 -13364 NM_001278387 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 333.25-5 chr3 102585071 102585266 + 2.25 NA Intergenic MIRb|SINE|MIR 150153 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 375.75-4 chr10 94539634 94539817 + 2.25 NA Intergenic Intergenic -6042 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 318.5-7 chr16 13699453 13699876 + 2.25 NA Intergenic MLT1F1|LTR|ERVL-MaLR -220493 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 334.5-9 chr4 54202580 54202772 + 2.25 NA Intergenic MIR|SINE|MIR -26617 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 191-46 chr6 69201325 69201417 + 2.25 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 566089 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 223.5-18 chr11 109482968 109483140 + 2.25 NA Intergenic L1MA3|LINE|L1 60864 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 292.5 chr10 53665348 53665631 + 2.25 NA Intergenic Intergenic -820741 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 137.25-47 chr21 21433141 21433250 + 2.25 NA TTS (NM_001352596) TTS (NM_001352596) 286033 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 339.75-6 chr16 22240369 22240692 + 2.25 NA intron (NM_013302, intron 2 of 17).2 L1ME4b|LINE|L1 34252 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 298.25 chr1 99492055 99492382 + 2.25 NA Intergenic Intergenic -4414 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 622.75 chr7 88842097 88842520 + 2.25 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -46571 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 230.5-10 chr12 5090858 5091020 + 2.25 NA Intergenic L1MC3|LINE|L1 47060 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 184-22 chr2 67364663 67364778 + 2.25 NA Intergenic Intergenic -32613 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 284.25-25 chr8 86836611 86836746 + 2.25 NA Intergenic Intergenic -29737 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 502.5 chr12 111729988 111730220 + 2.25 NA intron (NM_025247, intron 10 of 20) MER20|DNA|hAT-Charlie -36829 NM_001204889 217 Hs.604551 NM_000690 ENSG00000111275 ALDH2 ALDH-E2|ALDHI|ALDM aldehyde dehydrogenase 2 family member protein-coding 193-18 chr14 47962476 47962624 + 2.25 NA Intergenic Intergenic -167536 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 344.5 chr1 8645396 8645558 + 2.25 NA intron (NM_001042681, intron 2 of 22) intron (NM_001042681, intron 2 of 22) -150564 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 269.75 chr10 61753439 61753636 + 2.25 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 90576 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 324-2 chr16 77053310 77053524 + 2.25 NA Intergenic MIR1_Amn|SINE|MIR -137773 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 405-2 chr14 72700004 72700315 + 2.25 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 183339 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 272.25-7 chr17 28185522 28185767 + 2.25 NA intron (NM_016231, intron 8 of 10) AluJb|SINE|Alu -40919 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 366.75-7 chr7 8236305 8236505 + 2.25 NA intron (NM_001350826, intron 1 of 14) L1ME3E|LINE|L1 25647 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 259.5 chr1 117466990 117467167 + 2.25 NA intron (NM_006699, intron 8 of 12) intron (NM_006699, intron 8 of 12) 99629 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 264.75-9 chr2 14500067 14500207 + 2.25 NA Intergenic Intergenic -99179 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 218.25-24 chr16 72096512 72096653 + 2.25 NA intron (NM_014003, intron 2 of 26) intron (NM_014003, intron 2 of 26) -2204 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 236.25-19 chr20 35865820 35865991 + 2.25 NA intron (NM_016436, intron 6 of 17) AluSx|SINE|Alu 88721 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 201.25-34 chr5 95150530 95150684 + 2.25 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -68741 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 548.5 chr3 113244062 113244400 + 2.25 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 32115 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 271.5-9 chr17 57805320 57805477 + 2.25 NA Intergenic L1ME3G|LINE|L1 44646 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 353.25-5 chr7 30780571 30780823 + 2.25 NA intron (NR_037598, intron 4 of 19) intron (NR_037598, intron 4 of 19) 9280 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 216.75-42 chr8 67384013 67384159 + 2.25 NA intron (NR_136224, intron 1 of 4) intron (NR_136224, intron 1 of 4) 40252 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 355.5-10 chr4 72748471 72748808 + 2.25 NA Intergenic Intergenic -179418 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 278-13 chr2 14069999 14070162 + 2.25 NA Intergenic Intergenic 330878 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 334.5-11 chr5 58859407 58859706 + 2.25 NA TTS (NM_001317915) TTS (NM_001317915) 140342 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 499.75 chr15 24058973 24059365 + 2.25 NA intron (NR_126392, intron 4 of 5) intron (NR_126392, intron 4 of 5) 84022 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 401.25-3 chr12 64226469 64226793 + 2.25 NA Intergenic L1MA9|LINE|L1 -4335 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 419.25 chr10 26275335 26275627 + 2.25 NA intron (NM_000818, intron 11 of 16) intron (NM_000818, intron 11 of 16) 58707 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 477.5-3 chr7 106698272 106698549 + 2.25 NA Intergenic L1MC1|LINE|L1 -37252 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 348.25-8 chr5 19154295 19154501 + 2.25 NA Intergenic L1M4|LINE|L1 731874 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 335.25-8 chr18 7672181 7672348 + 2.25 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 104948 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 199-8 chr10 78880109 78880264 + 2.25 NA Intergenic L1MD2|LINE|L1 187262 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 229-24 chr22 34374155 34374347 + 2.25 NA Intergenic Intergenic -451363 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 281-15 chr3 29066008 29066242 + 2.25 NA Intergenic Intergenic 214814 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 283.5-23 chr7 52383491 52383722 + 2.25 NA Intergenic Intergenic -652027 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 326.25-10 chr2 189734334 189734510 + 2.25 NA intron (NM_144708, intron 17 of 22) MER5C1|DNA|hAT-Charlie -28358 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 257.5-11 chr14 76023433 76023629 + 2.25 NA intron (NR_045664, intron 3 of 7) MIR|SINE|MIR 37768 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 473.5 chr14 76589070 76589442 + 2.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR -172212 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 326.5-2 chr10 74090314 74090492 + 2.25 NA intron (NM_014000, intron 10 of 21) intron (NM_014000, intron 10 of 21) 60425 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 376.5-4 chr3 144506295 144506677 + 2.25 NA Intergenic HERVL-int|LTR|ERVL 533405 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 425.25 chr12 112341782 112342103 + 2.25 NA intron (NM_001109662, intron 1 of 75) intron (NM_001109662, intron 1 of 75) 40489 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 497.75 chr11 124476947 124477176 + 2.25 NA Intergenic L1ME3|LINE|L1 -35976 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 341.5-9 chr8 136101243 136101402 + 2.25 NA Intergenic Intergenic -429476 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 392.75-3 chr2 103544349 103544623 + 2.25 NA Intergenic Intergenic -560057 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 153.25-13 chr11 99105702 99105874 + 2.25 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 84839 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 387.25-2 chr13 84732065 84732389 + 2.25 NA Intergenic Intergenic -51427 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 333-3 chr12 5100454 5100657 + 2.25 NA Intergenic Intergenic 56676 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 450 chr1 187959140 187959572 + 2.25 NA Intergenic (TCTTTC)n|Simple_repeat|Simple_repeat 515728 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 303.25-4 chr15 58183311 58183464 + 2.25 NA intron (NM_020980, intron 5 of 5) intron (NM_020980, intron 5 of 5) 45006 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 397.5-7 chr5 159014244 159014684 + 2.25 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 83492 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 386.25 chr12 61172719 61173052 + 2.25 NA Intergenic Intergenic 1019954 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 268.5-28 chr5 118874621 118874745 + 2.25 NA intron (NM_001308081, intron 4 of 5) L1PA13|LINE|L1 -99903 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 287.25-19 chr7 54926774 54926940 + 2.25 NA Intergenic L1MA3|LINE|L1 -92160 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 392.25-3 chr9 27278205 27278458 + 2.25 NA intron (NR_026679, intron 4 of 16) intron (NR_026679, intron 4 of 16) 4462 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 225.25-29 chr6 79291261 79291483 + 2.25 NA Intergenic L1ME1|LINE|L1 22012 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 312-10 chr4 38499888 38500058 + 2.25 NA intron (NR_110951, intron 1 of 7) intron (NR_110951, intron 1 of 7) -9794 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 396.75 chr15 92725679 92725940 + 2.25 NA Intergenic Intergenic -69675 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 291-20 chr9 79364401 79364554 + 2.25 NA Intergenic L2b|LINE|L2 -207296 NM_001351564 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 272.5-4 chr2 164520958 164521284 + 2.25 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 47374 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 321 chr1 56966829 56967125 + 2.25 NA promoter-TSS (NM_001278543) promoter-TSS (NM_001278543) -837 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 182.75-40 chr5 9821965 9822111 + 2.25 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -32339 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 266.5-4 chr10 83543616 83543839 + 2.25 NA Intergenic Intergenic 133362 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 367.25-6 chr3 15538844 15539154 + 2.25 NA Intergenic Intergenic -17293 NM_080539 8292 Hs.146735 NM_005677 ENSG00000206561 COLQ CMS5|EAD collagen like tail subunit of asymmetric acetylcholinesterase protein-coding 397.25-2 chr13 79851794 79851985 + 2.25 NA Intergenic L3|LINE|CR1 -20697 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 203-41 chr8 114665092 114665197 + 2.25 NA Intergenic Intergenic 1002869 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 242.5-10 chr17 21973021 21973183 + 2.25 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -229893 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 336-11 chr3 78562166 78562437 + 2.25 NA Intergenic L1MA4|LINE|L1 457158 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 300.75-16 chr8 102238015 102238251 + 2.25 NA intron (NM_015713, intron 1 of 8) intron (NM_015713, intron 1 of 8) 698 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 219-40 chr8 114965258 114965382 + 2.25 NA Intergenic Intergenic 702693 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 225.75-16 chr3 39850292 39850404 + 2.25 NA intron (NM_001284424, intron 1 of 15) intron (NM_001284424, intron 1 of 15) 40688 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 304.5-6 chr2 63977438 63977588 + 2.25 NA intron (NM_001005739, intron 3 of 22) L1MCb|LINE|L1 41915 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 342-5 chr14 49010153 49010347 + 2.25 NA Intergenic Intergenic 576130 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 192-23 chr17 61309959 61310101 + 2.25 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 57674 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 352.25-4 chr8 127810405 127810633 + 2.25 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 14557 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 237.75-44 chr7 33040045 33040219 + 2.25 NA intron (NM_001002009, intron 1 of 9) intron (NM_001002009, intron 1 of 9) 774 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 200.25-15 chr11 58262545 58262702 + 2.25 NA Intergenic L1MA5|LINE|L1 5637 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 182-16 chr15 43263012 43263092 + 2.25 NA intron (NM_004245, intron 1 of 11) L1MB7|LINE|L1 3876 NM_201631 9333 Hs.129719 NM_004245 ENSG00000104055 TGM5 PSS2|TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 217.25-38 chr9 35885261 35885476 + 2.25 NA Intergenic AluJb|SINE|Alu -14967 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 412-2 chr21 28914178 28914541 + 2.25 NA Intergenic L1MA9|LINE|L1 -28986 NM_182749 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 232-2 chr1 219907652 219907851 + 2.25 NA Intergenic Intergenic 20900 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 261.75-30 chr8 88280213 88280384 + 2.25 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 47185 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 132.25-85 chr7 78727977 78728089 + 2.25 NA intron (NM_001301128, intron 2 of 20) L2a|LINE|L2 -280955 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 395.5-2 chr4 46739228 46739593 + 2.25 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 169835 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 317.75-5 chr9 9627843 9628082 + 2.25 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -171430 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 286-6 chr10 75789058 75789301 + 2.25 NA intron (NM_032024, intron 1 of 5) MIR|SINE|MIR 6418 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 277-25 chr7 10516256 10516421 + 2.25 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -186338 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 213.25-31 chr3 127353311 127353414 + 2.25 NA intron (NR_110147, intron 3 of 4) L1ME3Cz|LINE|L1 37308 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 273.5-4 chr10 73281083 73281223 + 2.25 NA intron (NM_001367801, intron 20 of 27) L1M5|LINE|L1 28412 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 388.5-3 chr1 211436610 211436806 + 2.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 53953 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 295.5-7 chr13 93226297 93226524 + 2.25 NA promoter-TSS (NM_005708) promoter-TSS (NM_005708) -397 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 288.75-3 chr12 21440627 21440950 + 2.25 NA intron (NM_001350913, intron 2 of 10) L1M2|LINE|L1 2873 NM_001350912 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 213.75-29 chr2 137201218 137201367 + 2.25 NA intron (NM_001316349, intron 7 of 27) L1MA8|LINE|L1 435747 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 417.5-2 chr1 113556119 113556316 + 2.25 NA intron (NM_001142782, intron 2 of 20) L1MC|LINE|L1 165702 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 415.25-3 chr6 45094388 45094604 + 2.25 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 103274 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 369.75 chr1 246439307 246439597 + 2.25 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -22040 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 446.75 chr11 44869972 44870440 + 2.25 NA intron (NM_130783, intron 3 of 9) L1MB8|LINE|L1 79954 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 197.5-20 chr14 70200104 70200221 + 2.25 NA intron (NR_135825, intron 2 of 3) L1ME3A|LINE|L1 -11092 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 249-25 chr3 34033670 34033838 + 2.25 NA Intergenic Intergenic 235124 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 418-2 chr18 42302884 42303279 + 2.25 NA intron (NR_046457, intron 4 of 6) intron (NR_046457, intron 4 of 6) 116413 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 347.75-2 chr12 10563752 10563974 + 2.25 NA intron (NR_146456, intron 1 of 2) intron (NR_146456, intron 1 of 2) 10484 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 318-10 chr2 20499231 20499475 + 2.25 NA intron (NR_157978, intron 1 of 3) intron (NR_157978, intron 1 of 3) 2171 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 181.5-35 chr2 30934341 30934479 + 2.25 NA intron (NM_024572, intron 9 of 14) L4_C_Mam|LINE|RTE-X -126964 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 259.75-3 chr11 27573210 27573449 + 2.25 NA intron (NR_033315, intron 2 of 6) L2b|LINE|L2 -58282 NR_107054 102465881 NR_107054 ENSG00000278483 MIR8087 hsa-mir-8087 microRNA 8087 ncRNA 368.75-6 chr9 115975254 115975446 + 2.25 NA Intergenic LTR16D|LTR|ERVL -50143 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 257.25-17 chr4 116960140 116960356 + 2.25 NA Intergenic Intergenic 125328 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 357 chr12 20254695 20254946 + 2.25 NA Intergenic Intergenic -114425 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 226.75-4 chr10 24823898 24824050 + 2.25 NA Intergenic L1MB2|LINE|L1 -100087 NM_001367447 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 248.25-19 chr2 209356729 209356973 + 2.25 NA Intergenic L1ME3E|LINE|L1 -67196 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 260-5 chr14 29215798 29215929 + 2.25 NA Intergenic Intergenic -430076 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 260-7 chr14 62990395 62990554 + 2.25 NA intron (NM_139318, intron 4 of 10) intron (NM_139318, intron 4 of 10) 54984 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 303.5-2 chr1 179975952 179976122 + 2.25 NA intron (NM_014810, intron 1 of 37) L2|LINE|L2 21227 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 274-16 chr2 202300486 202300705 + 2.25 NA intron (NM_015934, intron 13 of 14) intron (NM_015934, intron 13 of 14) 7544 NR_003031 692058 NR_003031 ENSG00000238317 SNORD11 HBII-95 small nucleolar RNA, C/D box 11 snoRNA 245.25-7 chr11 37414769 37414919 + 2.25 NA Intergenic Intergenic -523757 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 332.25-7 chr8 115305799 115306079 + 2.25 NA Intergenic Intergenic 362074 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 229-23 chr22 28208936 28209239 + 2.25 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -250782 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 415.25 chr14 25401944 25402278 + 2.25 NA Intergenic Intergenic -351814 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 333 chr1 39809187 39809390 + 2.25 NA Intergenic L1MC4|LINE|L1 20312 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 488 chr2 58488360 58488701 + 2.25 NA Intergenic Intergenic -32223 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 287-4 chr14 21132866 21133107 + 2.25 NA Intergenic L1MA8|LINE|L1 23077 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 240.25-25 chr7 94138787 94138920 + 2.25 NA Intergenic L2a|LINE|L2 -134498 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 305.75-13 chr7 108312285 108312439 + 2.25 NA intron (NM_001371126, intron 3 of 32) intron (NM_001371126, intron 3 of 32) 16164 NM_001371178 361.5-3 chr17 74530084 74530345 + 2.25 NA intron (NM_174892, intron 1 of 3) intron (NM_174892, intron 1 of 3) 1261 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 289.5-8 chr17 53393613 53393803 + 2.25 NA Intergenic MER68|LTR|ERVL 408203 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 415.75-7 chr8 102130843 102131069 + 2.25 NA Intergenic L1MA7|LINE|L1 5524 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 268.25-14 chr5 60223091 60223389 + 2.25 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 149423 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 425.75-3 chr4 67392263 67392609 + 2.25 NA Intergenic Intergenic 29564 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 288.5-13 chr3 9001465 9001594 + 2.25 NA intron (NM_014850, intron 18 of 21) L1MB7|LINE|L1 -38057 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 451.25 chr8 125747692 125747932 + 2.25 NA Intergenic Intergenic 203385 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 405.75 chr1 51724982 51725192 + 2.25 NA intron (NM_148906, intron 3 of 22) L1MCa|LINE|L1 -4763 NM_148904 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 264.75-10 chr2 72947886 72948032 + 2.25 NA intron (NM_001330402, intron 12 of 12) intron (NM_001330402, intron 12 of 12) 30440 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 453.75 chr8 144915609 144915850 + 2.25 NA Intergenic AluJo|SINE|Alu -13552 NM_001363100 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 271-21 chr6 15145752 15145989 + 2.25 NA Intergenic Intergenic -100199 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 277.75-12 chr5 11725318 11725549 + 2.25 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -136367 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 390.5-7 chr6 129986035 129986306 + 2.25 NA Intergenic L1ME2|LINE|L1 -32199 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 230.5-24 chr18 12861886 12862005 + 2.25 NA intron (NM_080423, intron 1 of 8) intron (NM_080423, intron 1 of 8) -20983 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 460.75 chr1 153126314 153126660 + 2.25 NA Intergenic Intergenic -12971 NM_001014450 6705 Hs.490252 NM_001014450 ENSG00000244094 SPRR2F - small proline rich protein 2F protein-coding 223-41 chr9 32735141 32735244 + 2.25 NA Intergenic L1ME4b|LINE|L1 -48348 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 357-11 chrX 73538267 73538572 + 2.25 NA intron (NR_029423, intron 1 of 1) L1MA9|LINE|L1 24666 NR_029423 139201 Hs.586477 NR_029423 ENSG00000269904 MAP2K4P1 - mitogen-activated protein kinase kinase 4 pseudogene 1 pseudo 289.25-11 chr3 171337590 171337781 + 2.25 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) 122720 NM_001161563 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 195.75-56 chr9 117915128 117915328 + 2.25 NA Intergenic L1MA4A|LINE|L1 210825 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 211.25-15 chr18 21401806 21402014 + 2.25 NA intron (NM_001142966, intron 6 of 32) intron (NM_001142966, intron 6 of 32) 159668 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 226.75-28 chr6 62918317 62918451 + 2.25 NA Intergenic L1ME3A|LINE|L1 401593 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 258.75-31 chr8 131631715 131631926 + 2.25 NA Intergenic Intergenic -272273 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 217.25-29 chr7 29055748 29056019 + 2.25 NA intron (NM_001371256, intron 15 of 16) intron (NM_001371256, intron 15 of 16) -69150 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 363.75-3 chr12 119498610 119498960 + 2.25 NA intron (NM_178499, intron 5 of 13) (AGAT)n|Simple_repeat|Simple_repeat -94989 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 395.75 chr15 52606734 52606920 + 2.25 NA intron (NM_001286495, intron 5 of 11) intron (NM_001286495, intron 5 of 11) -37381 NM_001306191 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 336.5-6 chr3 155802269 155802498 + 2.25 NA intron (NM_173657, intron 3 of 5) intron (NM_173657, intron 3 of 5) 3895 NM_001308229 285315 Hs.350846 NM_173657 ENSG00000174928 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 301-19 chr5 136298699 136298943 + 2.25 NA intron (NM_001167577, intron 2 of 10) LTR16A1|LTR|ERVL 3035 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 534.5 chr15 25927523 25927925 + 2.25 NA intron (NR_040082, intron 1 of 4) LTR56|LTR|ERV1 25364 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 288-7 chr15 65790868 65791107 + 2.25 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 1306 NM_001144823 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 151-33 chr19 29710221 29710297 + 2.25 NA intron (NM_001256047, intron 1 of 2) intron (NM_001256047, intron 1 of 2) 4797 NM_001282929 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 289-12 chr4 20777695 20777881 + 2.25 NA intron (NM_025221, intron 2 of 7) L2b|LINE|L2 72880 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 297-13 chr16 8313245 8313505 + 2.25 NA Intergenic Intergenic 276463 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 332.25-2 chr17 54950099 54950343 + 2.25 NA intron (NM_001321176, intron 15 of 16) intron (NM_001321176, intron 15 of 16) 18433 NR_027941 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 341.75-2 chr2 25897746 25897932 + 2.25 NA Intergenic AluJr|SINE|Alu -19352 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 360.5-3 chr15 63198843 63199273 + 2.25 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 9452 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 380.75-8 chr8 48497023 48497306 + 2.25 NA Intergenic MER58A|DNA|hAT-Charlie -54403 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 377.25-3 chr12 116110807 116111093 + 2.25 NA intron (NM_015335, intron 3 of 30) L1MC4|LINE|L1 37704 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 243.75-28 chr8 5710813 5710980 + 2.25 NA Intergenic Intergenic 695652 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 334.25-3 chr15 69204919 69205133 + 2.25 NA intron (NM_001324094, intron 2 of 5) L1ME1|LINE|L1 44391 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 378.5 chr10 59828819 59829080 + 2.25 NA intron (NM_005436, intron 3 of 8) intron (NM_005436, intron 3 of 8) -75494 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 602.25 chr3 88815918 88816467 + 2.25 NA Intergenic LTR85b|LTR|Gypsy? -291429 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 442.25-2 chr5 27975570 27976030 + 2.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 311865 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 412.25 chr4 187830968 187831164 + 2.25 NA Intergenic L1MA9|LINE|L1 -158425 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 297-20 chr6 44319752 44319925 + 2.25 NA Intergenic L2a|LINE|L2 -6491 NM_020745 57505 Hs.158381 NM_020745 ENSG00000124608 AARS2 AARSL|COXPD8|LKENP|MT-ALARS|MTALARS alanyl-tRNA synthetase 2, mitochondrial protein-coding 553.5 chr1 211776427 211776866 + 2.25 NA intron (NM_014873, intron 6 of 7) intron (NM_014873, intron 6 of 7) -52991 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 359.5-3 chr11 96743350 96743717 + 2.25 NA Intergenic Intergenic 235108 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 386.5-5 chr5 86934564 86934912 + 2.25 NA Intergenic Intergenic 180216 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 473.75-3 chr7 53748569 53748885 + 2.25 NA intron (NR_038371, intron 4 of 5) L1PA15|LINE|L1 63204 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 412.75-3 chr5 149903229 149903591 + 2.25 NA intron (NM_000440, intron 8 of 21) intron (NM_000440, intron 8 of 21) 29567 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 360 chr11 76944933 76945100 + 2.25 NA intron (NM_001300955, intron 2 of 9) L1M2a1|LINE|L1 84098 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 184.75-31 chr2 18201778 18201891 + 2.25 NA Intergenic MamRTE1|LINE|RTE-BovB 323167 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 242.25-31 chr8 129288597 129288778 + 2.25 NA Intergenic Intergenic -47447 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 294.75-15 chr4 187728914 187729099 + 2.25 NA Intergenic Kanga1|DNA|TcMar-Tc2 -56365 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 539 chr11 82032048 82032502 + 2.25 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -141439 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 320.75-10 chr8 119390886 119391235 + 2.25 NA Intergenic Intergenic -25386 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 259-29 chr7 144770240 144770361 + 2.25 NA intron (NM_001350887, intron 1 of 6) intron (NM_001350887, intron 1 of 6) -31402 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 356.25-7 chr3 111254401 111254595 + 2.25 NA Intergenic Intergenic 182682 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 178.5-27 chr2 55492960 55493082 + 2.25 NA Intergenic Intergenic -26574 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 249-40 chr7 136057503 136057689 + 2.25 NA Intergenic Intergenic -80237 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 199-17 chr16 56233553 56233820 + 2.25 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -11834 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 445.5 chr12 66741902 66742218 + 2.25 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 62209 NM_001366724 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 285.75-26 chr8 130569032 130569242 + 2.25 NA Intergenic Intergenic -125463 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 266-18 chr7 29198652 29198799 + 2.25 NA TTS (NR_120522) TTS (NR_120522) 984 NM_001293072 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 510.5-3 chr2 179923967 179924227 + 2.25 NA Intergenic L1ME2|LINE|L1 -62485 NM_001352808 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 437-2 chr22 49708861 49709107 + 2.25 NA Intergenic MER21B|LTR|ERVL -51465 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 220.75-35 chr8 135568599 135568789 + 2.25 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 111238 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 303-9 chr3 181873225 181873449 + 2.25 NA Intergenic L1ME4a|LINE|L1 -79027 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 367.75 chr16 80177862 80178133 + 2.25 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -362737 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 141.5-93 chr5 84767584 84767663 + 2.25 NA Intergenic Intergenic -382743 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 369.75-4 chr14 25666160 25666357 + 2.25 NA Intergenic Intergenic -615961 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 194.25-30 chr2 189852891 189853007 + 2.25 NA intron (NM_000534, intron 7 of 12) MIRb|SINE|MIR 68499 NM_001321049 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 361.25-3 chr22 24890365 24890684 + 2.25 NA intron (NM_001098498, intron 16 of 23) intron (NM_001098498, intron 16 of 23) 56171 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 232.75-10 chr19 40046593 40046805 + 2.25 NA intron (NM_001005851, intron 4 of 4) L2a|LINE|L2 9532 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 364.25-2 chr10 24823108 24823343 + 2.25 NA Intergenic Intergenic -99338 NM_001367447 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 298.25-5 chr14 43624547 43624702 + 2.25 NA Intergenic Intergenic 882659 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 223.5-76 chr9 13338815 13338932 + 2.25 NA Intergenic L1M5|LINE|L1 -59160 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 252 chr1 165796362 165796544 + 2.25 NA Intergenic Intergenic 27524 NR_125374 100147773 Hs.633824 NR_125374 TMCO1-AS1 - TMCO1 antisense RNA 1 ncRNA 149-55 chr8 82595672 82595781 + 2.25 NA Intergenic Intergenic -316378 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 463.75 chr11 115599756 115600020 + 2.25 NA Intergenic AluSz|SINE|Alu -95473 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 212.25-25 chr21 16610967 16611071 + 2.25 NA TTS (NR_136542) TTS (NR_136542) 20782 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 339.75-8 chr17 58001517 58001853 + 2.25 NA non-coding (NR_034041, exon 4 of 4) non-coding (NR_034041, exon 4 of 4) 5561 NM_001078166 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 354.75-3 chr16 78477022 78477352 + 2.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 377533 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 321.75-10 chr22 27469138 27469496 + 2.25 NA Intergenic Intergenic 158666 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 429.5 chr14 43382290 43382506 + 2.25 NA Intergenic Intergenic 1124885 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 209.5-31 chr3 192645539 192645658 + 2.25 NA intron (NM_004113, intron 2 of 5) L2c|LINE|L2 81943 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 414.75-2 chr14 56722700 56723116 + 2.25 NA Intergenic L4_C_Mam|LINE|RTE-X 82759 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 616.25 chr1 178864063 178864538 + 2.25 NA intron (NM_004673, intron 3 of 5) intron (NM_004673, intron 3 of 5) 6777 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 322.75-4 chr21 14590981 14591167 + 2.25 NA TTS (NM_001256579) TTS (NM_001256579) -7672 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 323.25-2 chr1 110475768 110476032 + 2.25 NA Intergenic Intergenic -4866 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 430.5 chr4 30779508 30779895 + 2.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 59332 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 206.25-23 chr3 118132276 118132445 + 2.25 NA Intergenic Intergenic -441435 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 273.75-10 chr2 7515268 7515555 + 2.25 NA Intergenic Intergenic 94150 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 234.25-31 chr7 94084823 94084995 + 2.25 NA Intergenic Intergenic -80554 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 189-34 chr22 26072213 26072359 + 2.25 NA Intergenic MIRb|SINE|MIR -97176 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 361 chr11 36280470 36280857 + 2.25 NA intron (NM_001101653, intron 1 of 4) intron (NM_001101653, intron 1 of 4) 8761 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 352.5-7 chr2 21065306 21065606 + 2.25 NA Intergenic L1MB1|LINE|L1 -21383 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 372.75-6 chr3 86189045 86189381 + 2.25 NA Intergenic L1PA15|LINE|L1 -292730 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 253.25-3 chr1 245793856 245793992 + 2.25 NA intron (NM_022743, intron 10 of 11) L1M5|LINE|L1 -559407 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 214-21 chr17 63409647 63409836 + 2.25 NA intron (NM_025185, intron 20 of 25) Tigger3c|DNA|TcMar-Tigger 30526 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 225.75-2 chr1 82514071 82514261 + 2.25 NA Intergenic Intergenic -389017 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 286-15 chr2 116608347 116608545 + 2.25 NA Intergenic Intergenic -1206245 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 374-5 chr3 96595308 96595595 + 2.25 NA Intergenic Intergenic -219143 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 211.25-4 chr1 180298042 180298237 + 2.25 NA intron (NM_032360, intron 7 of 7) intron (NM_032360, intron 7 of 7) -23458 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 374 chr17 70846746 70847110 + 2.25 NA Intergenic Intergenic 355251 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 370-8 chr6 80136887 80137102 + 2.25 NA intron (NR_134945, intron 3 of 10) L1M4|LINE|L1 30323 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 173.5-102 chr8 125864863 125864992 + 2.25 NA Intergenic L1MA9|LINE|L1 86270 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 343.75-2 chr12 6431819 6432116 + 2.25 NA Intergenic AluSc|SINE|Alu -12918 NM_001242 939 Hs.355307 NM_001242 ENSG00000139193 CD27 S152|S152. LPFS2|T14|TNFRSF7|Tp55 CD27 molecule protein-coding 282.5-4 chr10 90578834 90578986 + 2.25 NA Intergenic L1MC|LINE|L1 -38105 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 380.5-2 chr12 46042855 46043123 + 2.25 NA Intergenic AluSx|SINE|Alu -52415 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 252.5-33 chr6 163400490 163400783 + 2.25 NA Intergenic Intergenic 13314 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated ncRNA 255-6 chr12 52484921 52485052 + 2.25 NA Intergenic L1MA5A|LINE|L1 8271 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 339-7 chr2 178762131 178762404 + 2.25 NA intron (NM_133379, intron 43 of 45) intron (NM_133379, intron 43 of 45) -14659 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 362.25-6 chr3 41535459 41535715 + 2.25 NA intron (NR_136342, intron 30 of 34) intron (NR_136342, intron 30 of 34) 336082 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 250.5-2 chr1 220316137 220316272 + 2.25 NA Intergenic Intergenic -43751 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 246-22 chr5 41261769 41261903 + 2.25 NA promoter-TSS (NM_001115131) promoter-TSS (NM_001115131) -367 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 270.25-14 chr5 51817751 51817939 + 2.25 NA Intergenic Intergenic -190186 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 322.5-20 chr4 113931392 113931571 + 2.25 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 48166 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 251.25-13 chr18 6720934 6721112 + 2.25 NA Intergenic Intergenic -8693 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 449.25-2 chr8 15218830 15219217 + 2.25 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 19408 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 333.75-6 chr8 126906773 126907177 + 2.25 NA Intergenic Intergenic -106179 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 328.25-14 chr7 25434300 25434590 + 2.25 NA Intergenic Intergenic -205959 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 204.5-35 chr2 220755402 220755507 + 2.25 NA Intergenic Intergenic 816850 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 254.75-14 chr2 147347041 147347183 + 2.25 NA Intergenic Intergenic -497405 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 303.75 chr10 101101180 101101428 + 2.25 NA intron (NR_130723, intron 2 of 2) intron (NR_130723, intron 2 of 2) 29842 NR_130723 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 139-54 chr5 105423784 105423895 + 2.25 NA Intergenic Zaphod|DNA|hAT-Tip100 324365 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 309.75-4 chr12 38664060 38664323 + 2.25 NA intron (NM_153634, intron 19 of 19) L1MA5|LINE|L1 241400 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 357.25-2 chr19 37853958 37854226 + 2.25 NA intron (NR_040015, intron 1 of 5) AluSp|SINE|Alu 1104 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 745.25 chr8 130850482 130851306 + 2.25 NA intron (NM_001115, intron 9 of 17) MIRb|SINE|MIR 190015 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 267.25-13 chr6 141617755 141617958 + 2.25 NA Intergenic Intergenic 470943 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 265.75-14 chr7 129086917 129087156 + 2.25 NA Intergenic L1MB7|LINE|L1 31813 NR_002187 286016 Hs.369665 NR_002187 ENSG00000230359 TPI1P2 - triosephosphate isomerase 1 pseudogene 2 pseudo 197.25-62 chr8 125183447 125183567 + 2.25 NA TTS (NR_146192) TTS (NR_146192) 91647 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 303.25-5 chr15 99304828 99304971 + 2.25 NA intron (NM_001321677, intron 5 of 8) intron (NM_001321677, intron 5 of 8) 47374 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 240.25-28 chr9 33867500 33867639 + 2.25 NA intron (NM_017811, intron 1 of 4) L1ME3A|LINE|L1 50409 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 344.25-7 chr5 33755256 33755521 + 2.25 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 136602 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 246-31 chr8 21978055 21978168 + 2.25 NA intron (NM_015024, intron 8 of 27) intron (NM_015024, intron 8 of 27) -46023 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 405 chr11 103886961 103887182 + 2.25 NA Intergenic Intergenic 37165 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 310-19 chr5 121281078 121281279 + 2.25 NA Intergenic Intergenic -41372 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 463.5 chr10 62616002 62616483 + 2.25 NA intron (NM_199452, intron 1 of 6) L2a|LINE|L2 95794 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 231.75-9 chr16 85205780 85205898 + 2.25 NA Intergenic Intergenic -1957 NR_162142 113219463 NR_162142 MIR12128 - microRNA 12128 ncRNA 204.75-20 chr17 59092487 59092634 + 2.25 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 14320 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 280-6 chr10 35129219 35129372 + 2.25 NA intron (NM_183060, intron 1 of 5) intron (NM_183060, intron 1 of 5) 1838 NM_183060 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 322-7 chr3 162304 162618 + 2.25 NA Intergenic Intergenic -34135 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 310 chr1 15715208 15715368 + 2.25 NA intron (NM_015164, intron 1 of 19) AluJb|SINE|Alu -20970 NM_207348 284723 Hs.631867 NM_207348 ENSG00000162461 SLC25A34 - solute carrier family 25 member 34 protein-coding 229.75-18 chr3 49933864 49934012 + 2.25 NA Intergenic FLAM_A|SINE|Alu -3926 NM_032355 84315 Hs.655014 NM_032355 ENSG00000164077 MON1A SAND1 MON1 homolog A, secretory trafficking associated protein-coding 201.25-43 chr9 71827806 71827943 + 2.25 NA Intergenic MIRb|SINE|MIR -59361 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 260.75-9 chr2 17750056 17750274 + 2.25 NA intron (NM_024624, intron 1 of 26) intron (NM_024624, intron 1 of 26) 3645 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 341.5-5 chr4 180210524 180210792 + 2.25 NA Intergenic Intergenic 948491 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 619.25 chr7 51003830 51004240 + 2.25 NA Intergenic L1M8|LINE|L1 -210582 NM_001371008 272-17 chr2 153426021 153426197 + 2.25 NA Intergenic Intergenic 52653 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 246-9 chr16 20976067 20976218 + 2.25 NA intron (NM_001347886, intron 50 of 61) AluJo|SINE|Alu 74880 NM_001369645 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 260.25-2 chr11 58470540 58470723 + 2.25 NA Intergenic L1MB8|LINE|L1 -30458 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 246.5-24 chr7 114875827 114876025 + 2.25 NA Intergenic Intergenic -46228 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 325.25-10 chr4 118026618 118026830 + 2.25 NA Intergenic MIRb|SINE|MIR -6598 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 234-30 chr3 187686600 187686751 + 2.25 NA Intergenic Intergenic -15691 NR_034062 100131635 Hs.434448 NR_034062 ENSG00000228804 LOC100131635 - hCG1645011-like ncRNA 514.25 chr1 217191419 217191702 + 2.25 NA Intergenic Intergenic -53858 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 279-9 chr16 84532587 84532723 + 2.25 NA Intergenic Intergenic -27996 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 247.75-18 chr3 60547671 60547886 + 2.25 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 70092 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 275-2 chr1 199672486 199672765 + 2.25 NA Intergenic L2|LINE|L2 -355085 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 342-7 chr21 28077904 28078180 + 2.25 NA intron (NR_126010, intron 1 of 4) intron (NR_126010, intron 1 of 4) -12361 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 213-9 chr1 229539324 229539490 + 2.25 NA intron (NM_012089, intron 6 of 12) intron (NM_012089, intron 6 of 12) 19300 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 236.75-4 chr12 8089003 8089219 + 2.25 NA intron (NM_015509, intron 1 of 7) L2a|LINE|L2 6837 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 273-13 chr2 57821810 57821978 + 2.25 NA Intergenic L1MC1|LINE|L1 -85757 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 382.25-4 chr3 147649023 147649336 + 2.25 NA Intergenic Intergenic 227852 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 323.75 chr1 171806374 171806717 + 2.25 NA Intergenic L1ME1|LINE|L1 24885 NM_015935 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 268.25-17 chr6 134469948 134470196 + 2.25 NA intron (NR_038216, intron 2 of 2) intron (NR_038216, intron 2 of 2) 8825 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 510.5-2 chr2 45664875 45665112 + 2.25 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 13318 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 370.5-8 chr8 139565862 139566203 + 2.25 NA Intergenic Intergenic 137091 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 330.25 chr1 108759820 108760004 + 2.25 NA intron (NM_007269, intron 5 of 18) intron (NM_007269, intron 5 of 18) 13238 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 331-11 chr5 18329076 18329338 + 2.25 NA Intergenic Intergenic 521933 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 479-2 chr5 58256734 58257131 + 2.25 NA Intergenic Intergenic -134591 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 363.75 chr1 116014857 116015148 + 2.25 NA intron (NM_018420, intron 2 of 11) intron (NM_018420, intron 2 of 11) -37726 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 283.5-28 chr8 120094663 120094919 + 2.25 NA Intergenic Intergenic -30311 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 311.5-3 chr12 79260533 79260853 + 2.25 NA intron (NM_001291901, intron 3 of 9) intron (NM_001291901, intron 3 of 9) -158564 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 551.5 chr14 80477094 80477486 + 2.25 NA Intergenic Intergenic -246233 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 332.5-10 chr3 132663004 132663304 + 2.25 NA intron (NM_001321238, intron 1 of 9) HAL1|LINE|L1 2457 NM_001321238 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 418.75-3 chr17 58149646 58149996 + 2.25 NA Intergenic MIR|SINE|MIR -5333 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 216-9 chr13 20641789 20641899 + 2.25 NA intron (NR_148462, intron 20 of 28) intron (NR_148462, intron 20 of 28) -61499 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 209.25-46 chr8 49396350 49396509 + 2.25 NA Intergenic Intergenic 115751 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 208.5-74 chr8 129615395 129615519 + 2.25 NA intron (NR_130917, intron 1 of 3) L1ME4a|LINE|L1 -40439 NR_130918 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 228.75-34 chr6 148708088 148708207 + 2.25 NA Intergenic Intergenic -38883 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 268.25-23 chr8 134016200 134016382 + 2.25 NA Intergenic MER5A1|DNA|hAT-Charlie 129795 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 347.25-8 chr6 107349896 107350140 + 2.25 NA intron (NM_020381, intron 1 of 7) L1MC4|LINE|L1 109546 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 350.75 chr10 85546555 85546786 + 2.25 NA Intergenic Intergenic -31061 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 400.75-2 chr2 142067272 142067621 + 2.25 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 64255 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 311-15 chr5 127408327 127408560 + 2.25 NA intron (NM_001308121, intron 8 of 13) intron (NM_001308121, intron 8 of 13) -109197 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 123.75-91 chr6 119070126 119070234 + 2.25 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) -1037 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 156.75-69 chr4 156269386 156269478 + 2.25 NA Intergenic Intergenic -315566 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 278.5-25 chr6 61209902 61210077 + 2.25 NA Intergenic MER4-int|LTR|ERV1 -364141 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 445 chr14 51516801 51517182 + 2.25 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 27863 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 528.75-2 chr6 107430725 107431141 + 2.25 NA intron (NM_020381, intron 1 of 7) intron (NM_020381, intron 1 of 7) 28631 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 250.75-5 chr13 56178047 56178213 + 2.25 NA Intergenic L1PB3|LINE|L1 -962788 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 273.5-14 chr22 27237024 27237242 + 2.25 NA Intergenic MIRb|SINE|MIR -12454 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 197.25-48 chr4 166843251 166843405 + 2.25 NA intron (NM_001040159, intron 6 of 10) LTR12C|LTR|ERV1 391098 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 257.25-19 chr5 118922660 118922970 + 2.25 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -51771 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 390.75-4 chr19 37969800 37969990 + 2.25 NA intron (NM_015073, intron 1 of 21) L2c|LINE|L2 62687 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 415.75-8 chr8 125747178 125747513 + 2.25 NA Intergenic Intergenic 203852 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 170.25-60 chr7 117337055 117337158 + 2.25 NA Intergenic L1ME3G|LINE|L1 -14048 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 681.25 chr6 144750694 144751787 + 2.25 NA intron (NM_007124, intron 54 of 73) intron (NM_007124, intron 54 of 73) 345585 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 246.75-35 chr9 26813962 26814115 + 2.25 NA Intergenic L1MEb|LINE|L1 78764 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 270-5 chr10 76419731 76419871 + 2.25 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -468243 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 382.25 chr12 30015015 30015322 + 2.25 NA Intergenic Intergenic -230409 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 280.5-4 chr10 62469154 62469337 + 2.25 NA intron (NM_199451, intron 4 of 7) HSMAR2|DNA|TcMar-Mariner -51203 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 386.25-2 chr14 25627439 25627706 + 2.25 NA Intergenic MER44A|DNA|TcMar-Tigger -577275 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 247.25-7 chr13 85780921 85781086 + 2.25 NA Intergenic Intergenic 18416 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 168-10 chr1 188791050 188791161 + 2.25 NA Intergenic L1PA16|LINE|L1 1347477 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 218.5-34 chr3 112046255 112046439 + 2.25 NA intron (NM_001042575, intron 4 of 15) intron (NM_001042575, intron 4 of 15) 3369 NM_001366279 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 250.25-8 chr2 235403120 235403344 + 2.25 NA Intergenic Intergenic -90811 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 246.75-34 chr8 139844681 139844853 + 2.25 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -141644 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 273.75-3 chr1 158296464 158296716 + 2.25 NA Intergenic L1PA13|LINE|L1 6667 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 380-5 chr3 34918796 34918973 + 2.25 NA intron (NR_110817, intron 2 of 3) MLT1A-int|LTR|ERVL-MaLR 475139 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 151-22 chr16 49510017 49510092 + 2.25 NA intron (NM_001271620, intron 7 of 7) MIRb|SINE|MIR 8531 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 524.5 chr16 73976038 73976485 + 2.25 NA Intergenic Intergenic 239260 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 335.5-2 chr10 122899762 122899959 + 2.25 NA Intergenic Intergenic -10750 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 213.75-24 chr17 75714015 75714191 + 2.25 NA Intergenic Tigger5b|DNA|TcMar-Tigger -7356 NM_001005731 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 400.5 chr18 1431263 1431450 + 2.25 NA Intergenic Intergenic -71727 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 363.75-7 chrX 52221134 52221498 + 2.25 NA Intergenic L1MA2|LINE|L1 30694 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 242-25 chr2 191747397 191747631 + 2.25 NA Intergenic MIRc|SINE|MIR -45326 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 245.75-11 chr3 66797172 66797370 + 2.25 NA Intergenic Intergenic -58935 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 574.25 chr8 81485394 81485960 + 2.25 NA Intergenic Charlie5|DNA|hAT-Charlie -2444 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 200-21 chr17 62568487 62568686 + 2.25 NA intron (NM_001284363, intron 9 of 19) intron (NM_001284363, intron 9 of 19) -59084 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 373.5-4 chr21 30749484 30749814 + 2.25 NA Intergenic Intergenic -2390 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 342.5-5 chr2 208526303 208526477 + 2.25 NA Intergenic L1MA5A|LINE|L1 -16252 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 199.25-9 chr12 80756906 80756997 + 2.25 NA Intergenic L1ME5|LINE|L1 -6203 NR_120469 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 355.5-3 chr10 74506398 74506707 + 2.25 NA TTS (NR_120673) TTS (NR_120673) 22772 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 418.75 chr1 209594759 209595022 + 2.25 NA intron (NM_020439, intron 1 of 12) intron (NM_020439, intron 1 of 12) 11176 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 277.5-21 chr6 142066607 142066772 + 2.25 NA Intergenic L1MA3|LINE|L1 22110 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 326.5-3 chr17 39371879 39372092 + 2.25 NA intron (NM_001370209, intron 1 of 13) HAL1|LINE|L1 29641 NM_001184906 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 127.5-6 chr1 94905178 94905268 + 2.25 NA intron (NM_001839, intron 1 of 6) intron (NM_001839, intron 1 of 6) 20585 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 440.75 chr12 39363082 39363391 + 2.25 NA intron (NM_001173464, intron 6 of 37) intron (NM_001173464, intron 6 of 37) 79884 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 351.75-2 chr12 110156245 110156434 + 2.25 NA intron (NM_031473, intron 10 of 11) L1M4c|LINE|L1 31982 NR_144949 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 421.5-2 chr3 4773623 4773822 + 2.25 NA intron (NM_001168272, intron 45 of 60) intron (NM_001168272, intron 45 of 60) -22132 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 269.75-19 chr8 140190664 140190838 + 2.25 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -90216 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 358.75-6 chr7 54983213 54983418 + 2.25 NA Intergenic L1ME3|LINE|L1 -35702 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 338.75 chr1 110771801 110772022 + 2.25 NA Intergenic Intergenic -96971 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 202.5-54 chr7 119201999 119202125 + 2.25 NA Intergenic L1PA15-16|LINE|L1 705313 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 322.25 chr1 37441410 37441598 + 2.25 NA Intergenic AluJb|SINE|Alu 32939 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 388.5-7 chr3 140670511 140670879 + 2.25 NA Intergenic L1MA3|LINE|L1 -7369 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 299.25 chr1 202690737 202690937 + 2.25 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 19617 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 247.75-23 chr6 113567905 113568224 + 2.25 NA Intergenic L1M5|LINE|L1 82011 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 262.5-18 chr2 110720898 110721106 + 2.25 NA Intergenic Intergenic -11571 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 152 chr1 48843859 48843959 + 2.25 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -66940 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 177-24 chr2 30538220 30538399 + 2.25 NA intron (NM_182551, intron 4 of 6) L1M2|LINE|L1 91063 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 211-13 chr15 82091541 82091703 + 2.25 NA intron (NR_120367, intron 1 of 5) intron (NR_120367, intron 1 of 5) 3028 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 379.25-5 chr6 142381208 142381521 + 2.25 NA intron (NM_198569, intron 4 of 24) MamSINE1|SINE|tRNA-RTE 79357 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 233.5-4 chr1 227122465 227122618 + 2.25 NA intron (NM_001366019, intron 11 of 36) intron (NM_001366019, intron 11 of 36) 182247 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 198.75-36 chr5 20360060 20360179 + 2.25 NA intron (NM_001349558, intron 1 of 15) (TA)n|Simple_repeat|Simple_repeat 54568 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 208.5-41 chr2 134698479 134698588 + 2.25 NA intron (NM_030923, intron 2 of 7) L1MEd|LINE|L1 20467 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 221.25-16 chr2 174955740 174955875 + 2.25 NA intron (NR_038133, intron 1 of 11) L1PA16|LINE|L1 49446 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 296 chr1 75249074 75249256 + 2.25 NA intron (NM_001320283, intron 5 of 21) intron (NM_001320283, intron 5 of 21) 114777 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 472.25 chr5 99450048 99450298 + 2.25 NA Intergenic MLT1H2|LTR|ERVL-MaLR -83817 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 457.5 chr2 7582308 7582560 + 2.25 NA Intergenic Intergenic 161173 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 415.5-4 chr7 7912902 7913250 + 2.25 NA Intergenic Intergenic 55676 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 400.25 chr14 48128744 48129061 + 2.25 NA Intergenic Intergenic -333888 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 222 chr1 5281918 5282084 + 2.25 NA Intergenic Intergenic 580740 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 391.5 chr1 200157085 200157389 + 2.25 NA intron (NM_205860, intron 7 of 7) MIRb|SINE|MIR 114412 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 346.5-7 chr7 81626076 81626406 + 2.25 NA promoter-TSS (NR_126026) promoter-TSS (NR_126026) -25 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 213.75-10 chr10 55340925 55341024 + 2.25 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -258068 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 258.25-19 chr5 16404171 16404357 + 2.25 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 36838 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 249.25-7 chr15 38739394 38739537 + 2.25 NA Intergenic Intergenic 42867 NR_160786 383.25-4 chr4 51859724 51859951 + 2.25 NA intron (NM_001287757, intron 2 of 11) intron (NM_001287757, intron 2 of 11) 16258 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 259.5-14 chr18 66851892 66852053 + 2.25 NA Intergenic Intergenic -229612 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 243.25-12 chr3 173218417 173218534 + 2.25 NA Intergenic L1M3f|LINE|L1 -77240 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 338.75-5 chr7 13145675 13146018 + 2.25 NA Intergenic Intergenic 458213 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 457 chr5 175329375 175329616 + 2.25 NA Intergenic Intergenic 114687 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 178.75-31 chr2 177139465 177139629 + 2.25 NA Intergenic L1ME4a|LINE|L1 72864 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 370.25-8 chr9 87486451 87486714 + 2.25 NA Intergenic Intergenic -10646 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 220.75-7 chr14 63425815 63425929 + 2.25 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 82366 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 185.25-10 chr11 19680340 19680475 + 2.25 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -32430 NM_145117 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 301.25-9 chr6 112952708 112953070 + 2.25 NA Intergenic L1M7|LINE|L1 480558 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 191-33 chr3 82908837 82908953 + 2.25 NA Intergenic Intergenic 922753 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 494.25 chr14 20779523 20779880 + 2.25 NA Intergenic L1MC|LINE|L1 -1567 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 256-2 chr1 85274687 85274830 + 2.25 NA intron (NM_001320715, intron 1 of 2) intron (NM_001320715, intron 1 of 2) -1600 NR_045484 646626 Hs.193516 NR_045484 LOC646626 - uncharacterized LOC646626 ncRNA 332-9 chr21 29166774 29166924 + 2.25 NA intron (NM_001286620, intron 4 of 4) L1MB7|LINE|L1 21272 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 222.25-16 chr2 156903235 156903386 + 2.25 NA Intergenic Intergenic -354395 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 449.5-2 chr2 61332863 61333087 + 2.25 NA intron (NM_014709, intron 19 of 79) intron (NM_014709, intron 19 of 79) 84402 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 163.5-20 chr11 130953863 130953988 + 2.25 NA Intergenic Intergenic -37438 NM_001347924 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 308.25-6 chr3 98693181 98693374 + 2.25 NA Intergenic Intergenic -38959 NM_001323353 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 149.25-59 chr7 41022618 41022730 + 2.25 NA Intergenic L1MEd|LINE|L1 -42735 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 404-6 chr3 10900506 10900759 + 2.25 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 84404 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 318.25 chr10 97981614 97981828 + 2.25 NA intron (NM_001206528, intron 2 of 14) L1ME4a|LINE|L1 48900 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 305.75 chr1 153155838 153156085 + 2.25 NA Intergenic L2c|LINE|L2 -5071 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 285.5-16 chr6 66716418 66716655 + 2.25 NA Intergenic L1MB7|LINE|L1 928657 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 216-14 chr14 60196107 60196228 + 2.25 NA Intergenic LTR37B|LTR|ERV1 -26303 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 354.5-6 chr6 65252976 65253252 + 2.25 NA intron (NM_001292009, intron 12 of 43) L1MD2|LINE|L1 -48304 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 431.5 chr1 163811930 163812259 + 2.25 NA Intergenic Intergenic -388903 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 254.25-22 chr6 64965633 64965818 + 2.25 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -335693 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 243.75-23 chr5 4518239 4518384 + 2.25 NA Intergenic Intergenic -255170 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 382-3 chr3 5174267 5174574 + 2.25 NA intron (NM_018184, intron 6 of 6) intron (NM_018184, intron 6 of 6) -13287 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 205.5-52 chr7 26420593 26420701 + 2.25 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -21229 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 374.75-4 chr6 97283736 97284045 + 2.25 NA promoter-TSS (NM_001350599) promoter-TSS (NM_001350599) -674 NM_001350600 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 178.5-46 chr3 37338446 37338618 + 2.25 NA intron (NM_001172713, intron 19 of 22) intron (NM_001172713, intron 19 of 22) -47737 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 282.25-15 chr8 61375553 61375686 + 2.25 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 87649 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 473 chr16 58956109 58956422 + 2.25 NA Intergenic L1MA10|LINE|L1 -221949 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 422.75 chr12 91101289 91101653 + 2.25 NA Intergenic Intergenic 10023 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 219.5-27 chr2 116823825 116823988 + 2.25 NA Intergenic Intergenic -990785 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 316.5-14 chr8 54235634 54235884 + 2.25 NA Intergenic AluJr|SINE|Alu -94927 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 152.25-21 chr14 58691538 58691662 + 2.25 NA Intergenic MER102b|DNA|hAT-Charlie 52763 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 179.75-25 chr2 57602902 57603040 + 2.25 NA Intergenic L1MC4a|LINE|L1 -304680 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 368.5-2 chr17 59672445 59672634 + 2.25 NA intron (NM_001288653, intron 14 of 31) intron (NM_001288653, intron 14 of 31) 35059 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 604 chr11 93950541 93951064 + 2.25 NA Intergenic Intergenic -70552 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 582 chr3 95754799 95755288 + 2.25 NA Intergenic Intergenic -71850 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 261-26 chr2 121525082 121525317 + 2.25 NA intron (NM_015282, intron 6 of 38) intron (NM_015282, intron 6 of 38) -5681 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 397.5-5 chr4 100826566 100826838 + 2.25 NA Intergenic MIRc|SINE|MIR -151589 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 206.5-27 chr2 74098333 74098499 + 2.25 NA intron (NM_001287491, intron 10 of 11) L1ME4a|LINE|L1 49496 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 438.5-6 chr7 86918345 86918659 + 2.25 NA exon (NM_001142749, exon 12 of 22) exon (NM_001142749, exon 12 of 22) 47397 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 184.5-59 chr5 19420376 19420490 + 2.25 NA Intergenic Intergenic 465839 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 268.5 chr1 12301674 12301887 + 2.25 NA intron (NM_015378, intron 25 of 69) MER21C|LTR|ERVL 71750 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 402.25-2 chr2 19558238 19558489 + 2.25 NA Intergenic Intergenic -199740 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 285-4 chr1 105959168 105959355 + 2.25 NA intron (NR_146609, intron 5 of 5) L1MA6|LINE|L1 68992 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 238.5-26 chr4 79151858 79152001 + 2.25 NA intron (NR_038342, intron 3 of 5) L1ME3D|LINE|L1 174132 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 235-22 chr19 27650073 27650284 + 2.25 NA Intergenic HSAT4|Satellite|centr -143253 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 279.25-10 chr16 54714262 54714493 + 2.25 NA Intergenic Intergenic 133856 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 355.5 chr1 232666654 232666963 + 2.25 NA Intergenic L1M5|LINE|L1 -51263 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 430.5-3 chr8 47064870 47065248 + 2.25 NA Intergenic MER57-int|LTR|ERV1 -124248 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 300-14 chr2 58300885 58301027 + 2.25 NA Intergenic Intergenic 25079 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 330.75-7 chr20 55754797 55755119 + 2.25 NA Intergenic (GAG)n|Simple_repeat|Simple_repeat 250561 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 289-18 chr8 94770269 94770454 + 2.25 NA intron (NM_181787, intron 12 of 18) intron (NM_181787, intron 12 of 18) 50461 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 369-13 chr5 180224990 180225204 + 2.25 NA Intergenic L1M5|LINE|L1 -15886 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 382.25-3 chr3 96359866 96360162 + 2.25 NA promoter-TSS (NR_107027) promoter-TSS (NR_107027) 50 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 312-13 chr9 86604752 86604989 + 2.25 NA Intergenic Intergenic -250460 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 372-3 chr18 8373673 8373966 + 2.25 NA intron (NM_002845, intron 22 of 30) AluJr|SINE|Alu -6785 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 270-23 chr5 31485071 31485223 + 2.25 NA intron (NM_013235, intron 13 of 34) intron (NM_013235, intron 13 of 34) 46946 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 447.75-3 chr2 144873213 144873541 + 2.25 NA intron (NR_033870, intron 2 of 4) MIRb|SINE|MIR 205410 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 384.25-3 chr4 87783476 87783751 + 2.25 NA Intergenic Intergenic -15941 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 441 chr13 43681331 43681611 + 2.25 NA intron (NM_001347969, intron 1 of 16) intron (NM_001347969, intron 1 of 16) -51994 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 435.75-2 chr2 179180556 179180861 + 2.25 NA intron (NM_178123, intron 3 of 17) L1ME2z|LINE|L1 84124 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 380.25-3 chr9 29309701 29309990 + 2.25 NA Intergenic Intergenic -96244 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 324.75-4 chr12 92780924 92781370 + 2.25 NA intron (NM_003566, intron 23 of 28) AluJb|SINE|Alu 44658 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 289-6 chr13 102324809 102325055 + 2.25 NA intron (NM_001321941, intron 1 of 5) intron (NM_001321941, intron 1 of 5) -7228 NM_001321935 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 483.5-3 chr8 105771947 105772326 + 2.25 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 288367 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 340.75-2 chr1 195575771 195576070 + 2.25 NA Intergenic Intergenic 512795 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 338.25-7 chr4 62279847 62280057 + 2.25 NA Intergenic Intergenic -118187 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 249.75-5 chr10 57329512 57329964 + 2.25 NA Intergenic MLT1H1|LTR|ERVL-MaLR -25179 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 401.75 chr3 79207225 79207417 + 2.25 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -187862 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 263.5-25 chr4 88517065 88517235 + 2.25 NA Intergenic Intergenic 6626 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 294-15 chr4 99954139 99954292 + 2.25 NA intron (NR_125923, intron 1 of 3) MER2|DNA|TcMar-Tigger 3721 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 249-37 chr7 39154548 39154685 + 2.25 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -141049 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 218.5-44 chr6 54575706 54575851 + 2.25 NA Intergenic Intergenic 267337 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 173.25-61 chr6 79047521 79047662 + 2.25 NA intron (NM_017934, intron 6 of 39) MIRb|SINE|MIR 30663 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 168.75-57 chr7 89475148 89475256 + 2.25 NA Intergenic Intergenic -644198 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 284.25-20 chr5 16884004 16884206 + 2.25 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 52183 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 219.25-31 chr6 134565153 134565263 + 2.25 NA Intergenic Intergenic -25203 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 372.75-3 chr17 58496737 58496936 + 2.25 NA intron (NM_004687, intron 15 of 18) MIRb|SINE|MIR -8428 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 246.25-30 chr8 34566162 34566316 + 2.25 NA Intergenic Intergenic -217682 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 417-4 chr6 110402110 110402301 + 2.25 NA intron (NR_160546, intron 2 of 2) L1MC4|LINE|L1 13370 NM_001368172 8528 Hs.591348 NM_003649 ENSG00000203797 DDO DASOX|DDO-1|DDO-2 D-aspartate oxidase protein-coding 243.5-10 chr17 61719845 61720040 + 2.25 NA intron (NM_032043, intron 16 of 19) AluJo|SINE|Alu -128723 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 305.25-20 chr8 99703028 99703232 + 2.25 NA intron (NM_017890, intron 36 of 61) intron (NM_017890, intron 36 of 61) -166269 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 384.75-2 chr11 78468866 78469134 + 2.25 NA intron (NM_024678, intron 10 of 13) intron (NM_024678, intron 10 of 13) -39164 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 489.25 chr8 84296142 84296477 + 2.25 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 111643 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 335.25-5 chr12 22117402 22117657 + 2.25 NA Intergenic Intergenic 71311 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 328.5 chr1 150095010 150095361 + 2.25 NA intron (NM_007259, intron 13 of 14) L2a|LINE|L2 27409 NM_007259 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 614 chr4 47545056 47545580 + 2.25 NA intron (NM_020453, intron 9 of 22) L2a|LINE|L2 60043 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 1242.5 chr15 101330459 101331834 + 2.25 NA intron (NM_138319, intron 14 of 20) intron (NM_138319, intron 14 of 20) -3291 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 374.25-2 chr11 101438691 101438931 + 2.25 NA Intergenic L1PA13|LINE|L1 81094 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 304.75-3 chr15 96831691 96832098 + 2.25 NA Intergenic Intergenic 48459 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 316.5-13 chr7 40848352 40848656 + 2.25 NA intron (NM_024728, intron 14 of 14) LTR34|LTR|ERV1 131435 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 281.5-8 chr2 68426579 68426817 + 2.25 NA Intergenic MIR|SINE|MIR 40596 NR_133923 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 309.5-11 chr4 86339774 86340014 + 2.25 NA intron (NM_001363657, intron 2 of 13) MIR|SINE|MIR 14750 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 297-22 chr6 148939053 148939190 + 2.25 NA intron (NM_005715, intron 2 of 7) L1M4|LINE|L1 25563 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 307-10 chr4 138822200 138822442 + 2.25 NA intron (NR_133945, intron 2 of 2) intron (NR_133945, intron 2 of 2) 190325 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 171.25-13 chr13 113182951 113183072 + 2.25 NA intron (NM_001127202, intron 9 of 13) intron (NM_001127202, intron 9 of 13) 24357 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 199.5-50 chr7 8020575 8020671 + 2.25 NA intron (NM_138426, intron 2 of 7) intron (NM_138426, intron 2 of 7) 51827 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 271.5-14 chr20 36104137 36104268 + 2.25 NA intron (NM_001258329, intron 1 of 22) intron (NM_001258329, intron 1 of 22) 11492 NM_001258329 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 213-5 chr1 88521325 88521499 + 2.25 NA Intergenic Intergenic -162732 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 412-3 chr5 64555843 64556099 + 2.25 NA intron (NM_001029875, intron 2 of 5) MER3|DNA|hAT-Charlie -19679 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 305-18 chr5 106582404 106582627 + 2.25 NA Intergenic Intergenic 428499 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 311 chr1 149947035 149947408 + 2.25 NA intron (NM_020205, intron 11 of 11) intron (NM_020205, intron 11 of 11) -10342 NM_001145862 10903 Hs.425144 NM_006697 ENSG00000014914 MTMR11 CRA myotubularin related protein 11 protein-coding 160-31 chr3 191427096 191427170 + 2.25 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 1609 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 289.5-11 chr18 78897228 78897440 + 2.25 NA Intergenic Intergenic -82941 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 330.5-10 chr5 180051832 180052092 + 2.25 NA intron (NM_001280801, intron 1 of 7) intron (NM_001280801, intron 1 of 7) 19797 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 220.5-32 chr3 122986045 122986290 + 2.25 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 7106 NM_001256346 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 297.25-13 chr2 234596746 234596922 + 2.25 NA Intergenic LTR81A|LTR|Gypsy -85834 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 148.5-72 chr4 82509367 82509442 + 2.25 NA intron (NM_001353454, intron 1 of 7) intron (NM_001353454, intron 1 of 7) 52584 NM_001353455 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 251.75-11 chr3 53438997 53439108 + 2.25 NA Intergenic Intergenic -55559 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 474-3 chr8 133908317 133908698 + 2.25 NA Intergenic L3|LINE|CR1 22011 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 270-31 chr9 22740684 22740863 + 2.25 NA intron (NR_038977, intron 4 of 5) intron (NR_038977, intron 4 of 5) 94573 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 498.5-2 chr11 114862614 114863034 + 2.25 NA Intergenic Intergenic 184297 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 452.25-2 chr19 31539374 31539782 + 2.25 NA Intergenic Intergenic -48611 NM_001278575 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 326-11 chr2 89833269 89833584 + 2.25 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -195519 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 242.5-4 chr11 75073487 75073650 + 2.25 NA Intergenic Intergenic 23322 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 314-2 chr10 28197784 28197964 + 2.25 NA intron (NR_134518, intron 2 of 16) L1MA3|LINE|L1 84249 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 244.25-3 chr12 124492352 124492608 + 2.25 NA intron (NM_001077261, intron 3 of 47) intron (NM_001077261, intron 3 of 47) 75132 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 380.75-6 chr6 52517157 52517500 + 2.25 NA intron (NM_012288, intron 2 of 10) MIR|SINE|MIR 59732 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 450.75-2 chr2 199003605 199003860 + 2.25 NA Intergenic Intergenic 454207 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 253.5-19 chr17 80544318 80544472 + 2.25 NA promoter-TSS (NM_001163034) promoter-TSS (NM_001163034) -443 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 138.25-31 chr16 63535535 63535615 + 2.25 NA Intergenic Intergenic -1499137 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 442.75 chr15 95879006 95879274 + 2.25 NA Intergenic Intergenic 248701 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 275.5-13 chr18 77972597 77972744 + 2.25 NA intron (NR_104127, intron 1 of 1) intron (NR_104127, intron 1 of 1) 21057 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 272.25-17 chr9 102044359 102044499 + 2.25 NA Intergenic Intergenic -305849 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 365.25-5 chr8 49444126 49444369 + 2.25 NA Intergenic Intergenic 67933 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 263-12 chr18 449144 449283 + 2.25 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 51488 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 311.25-11 chr7 125122169 125122386 + 2.25 NA intron (NR_125718, intron 7 of 10) intron (NR_125718, intron 7 of 10) -62292 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 336.5-3 chr16 74499056 74499259 + 2.25 NA intron (NR_027264, intron 4 of 26) intron (NR_027264, intron 4 of 26) -77687 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 270.75-9 chr2 40564252 40564478 + 2.25 NA Intergenic Intergenic -51930 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 559.25 chr2 24605566 24606149 + 2.25 NA intron (NM_001362950, intron 3 of 23) MLT1J1|LTR|ERVL-MaLR 21380 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 141-67 chr6 39344859 39344965 + 2.25 NA intron (NM_001289020, intron 20 of 21) MLT1J|LTR|ERVL-MaLR -21944 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 358.75-2 chr14 67913817 67914145 + 2.25 NA intron (NM_133509, intron 7 of 10) L1MA3|LINE|L1 90389 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 318-15 chr4 90201516 90201693 + 2.25 NA intron (NM_001145065, intron 1 of 10) MER33|DNA|hAT-Charlie -33427 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 339.25-5 chr8 118873141 118873529 + 2.25 NA Intergenic Intergenic 78550 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 388.5-2 chr1 97035328 97035615 + 2.25 NA Intergenic Intergenic -60452 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 139.5-86 chr5 162625145 162625227 + 2.25 NA Intergenic Intergenic 557544 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 284.5-10 chr14 43488065 43488305 + 2.25 NA Intergenic L1M4a2|LINE|L1 1019098 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 279-3 chr1 159850515 159850708 + 2.25 NA intron (NR_147123, intron 1 of 3) intron (NR_147123, intron 1 of 3) 4426 NR_147124 284677 Hs.647718 NM_001134233 ENSG00000256029 SNHG28 C1orf204|VSIG8-OT1 small nucleolar RNA host gene 28 ncRNA 307.5-8 chr4 48356804 48356965 + 2.25 NA intron (NM_020846, intron 1 of 7) MamRTE1|LINE|RTE-BovB 15355 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 379.5-3 chr14 40511222 40511558 + 2.25 NA Intergenic Intergenic -443321 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 411 chr17 29981909 29982214 + 2.25 NA intron (NR_026738, intron 4 of 15) intron (NR_026738, intron 4 of 15) 40427 NR_026738 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 467.25-4 chr8 123761398 123761773 + 2.25 NA Intergenic Intergenic -6854 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 416 chr10 44564532 44564865 + 2.25 NA Intergenic Intergenic -179601 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 247.5-5 chr10 34691203 34691393 + 2.25 NA intron (NM_001184789, intron 2 of 22) L1PA15|LINE|L1 123998 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 135.75-16 chr10 59511627 59511733 + 2.25 NA Intergenic Intergenic -148499 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 332-4 chr15 61925333 61925614 + 2.25 NA exon (NM_017684, exon 51 of 83) exon (NM_017684, exon 51 of 83) 134974 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 300-4 chr10 31720039 31720263 + 2.25 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 188775 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 195.25-20 chr19 27774239 27774390 + 2.25 NA Intergenic Intergenic -19117 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 338.5-5 chr3 6461001 6461244 + 2.25 NA Intergenic L1MB8|LINE|L1 344327 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 284-16 chr4 95377940 95378115 + 2.25 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 170946 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 316.75-6 chr5 144364919 144365101 + 2.25 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 159619 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 420-3 chr16 3740553 3741199 + 2.25 NA intron (NM_004380, intron 23 of 30) intron (NM_004380, intron 23 of 30) -23352 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 387.25-7 chr5 26252881 26253198 + 2.25 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat 785547 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 202.75-25 chr6 82285473 82285588 + 2.25 NA Intergenic Intergenic -37786 NM_015525 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 201.5-48 chr5 56709369 56709519 + 2.25 NA Intergenic L1PA16|LINE|L1 63427 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 334.5-5 chr11 78919050 78919314 + 2.25 NA intron (NM_001098816, intron 6 of 33) MIRb|SINE|MIR -344318 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 256.25-6 chr15 50657656 50657821 + 2.25 NA intron (NR_149154, intron 3 of 37) intron (NR_149154, intron 3 of 37) 29059 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 277.75-16 chr7 105565255 105565460 + 2.25 NA TTS (NM_001355527) TTS (NM_001355527) 16136 NM_001355530 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 269.25-4 chr14 60261791 60261970 + 2.25 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 12659 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 258-14 chr14 55930975 55931326 + 2.25 NA Intergenic L1MEd|LINE|L1 -134476 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 227.25-37 chr8 65580783 65580947 + 2.25 NA Intergenic L1PB4|LINE|L1 -18199 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 260.5-3 chr10 58665942 58666129 + 2.25 NA intron (NM_001080512, intron 2 of 20) MER57A1|LTR|ERV1 -48980 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 354-3 chr11 129742208 129742421 + 2.25 NA Intergenic L1ME4b|LINE|L1 -73467 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 305.25-5 chr16 52657741 52657985 + 2.25 NA Intergenic L1MA5A|LINE|L1 -50888 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 310.25-6 chr18 22578326 22578687 + 2.25 NA Intergenic L1ME3|LINE|L1 -160591 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 693.25 chr8 117224976 117225478 + 2.25 NA Intergenic Intergenic 90232 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 234-4 chr1 160912452 160912560 + 2.25 NA Intergenic Intergenic -19959 NR_110695 101928372 NR_110695 ENSG00000198358 LOC101928372 - uncharacterized LOC101928372 ncRNA 315.25-8 chr2 221181569 221181719 + 2.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 390660 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 319-10 chr7 88252012 88252165 + 2.25 NA Intergenic L1MA2|LINE|L1 -25095 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 383-6 chr3 60556676 60556990 + 2.25 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 61037 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 250.5-24 chr4 138588309 138588471 + 2.25 NA Intergenic MER63C|DNA|hAT-Blackjack 278679 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 206.75-8 chr12 101465938 101466135 + 2.25 NA Intergenic Intergenic -9300 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 178.5-42 chr22 28522576 28522679 + 2.25 NA intron (NM_001145418, intron 2 of 22) L1MEg1|LINE|L1 62758 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 195.5-89 chr8 116471716 116471884 + 2.25 NA Intergenic Intergenic -146741 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 244.5 chr1 78367418 78367622 + 2.25 NA intron (NR_027310, intron 4 of 5) L1MEi|LINE|L1 -123454 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 375.75-3 chr10 59649966 59650214 + 2.25 NA TTS (NM_001323978) TTS (NM_001323978) 59801 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 279.75-5 chr10 109271581 109271776 + 2.25 NA Intergenic AluJr|SINE|Alu 651568 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 231.75-16 chr2 78253842 78253981 + 2.25 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 36820 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 348 chr1 114761473 114761698 + 2.25 NA Intergenic Intergenic -3535 NM_001242891 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 428.25 chr8 92375285 92375701 + 2.25 NA Intergenic Intergenic -272108 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 327.25-7 chr5 110996270 110996472 + 2.25 NA Intergenic Intergenic -73709 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 253.25-4 chr10 74236637 74236825 + 2.25 NA intron (NM_001369124, intron 3 of 9) Tigger1|DNA|TcMar-Tigger 59968 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 467.5 chr10 123075960 123076228 + 2.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -59876 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 368.25-6 chr8 90037221 90037531 + 2.25 NA intron (NM_001330575, intron 8 of 11) intron (NM_001330575, intron 8 of 11) 35899 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 320-3 chr12 4994052 4994243 + 2.25 NA Intergenic Intergenic -49732 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 362.75-3 chr17 57705288 57705564 + 2.25 NA Intergenic Intergenic 39873 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 228.75-38 chr8 78689071 78689179 + 2.25 NA intron (NM_001362969, intron 4 of 9) intron (NM_001362969, intron 4 of 9) 23036 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 358.75 chr10 55388138 55388600 + 2.25 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -210673 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 360.75-9 chr4 104837548 104837767 + 2.25 NA Intergenic L1MC4a|LINE|L1 -308218 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 254-20 chr7 16434019 16434181 + 2.25 NA Intergenic Intergenic -12562 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 234.75-14 chr14 52670671 52670873 + 2.25 NA intron (NM_014584, intron 6 of 15) intron (NM_014584, intron 6 of 15) 24786 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 282 chr1 57956961 57957164 + 2.25 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 96481 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 289-14 chr6 95166852 95167198 + 2.25 NA Intergenic Intergenic 410426 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 424.5 chr10 112557362 112557651 + 2.25 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -76664 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 239.75-19 chr2 241399495 241399629 + 2.25 NA intron (NM_014808, intron 2 of 26) AluSx|SINE|Alu 43277 NM_014808 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 253.5-2 chr1 85267751 85267930 + 2.25 NA exon (NM_003921, exon 3 of 3) exon (NM_003921, exon 3 of 3) -8178 NM_198077 148423 Hs.26226 NM_198077 ENSG00000162642 C1orf52 gm117 chromosome 1 open reading frame 52 protein-coding 281.25-12 chr5 89693043 89693251 + 2.25 NA Intergenic Intergenic 323573 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 214.75-32 chr5 95559434 95559594 + 2.25 NA intron (NM_198150, intron 1 of 7) L1MB8|LINE|L1 4413 NM_198150 153642 Hs.585051 NM_198150 ENSG00000164291 ARSK TSULF arylsulfatase family member K protein-coding 488-2 chr3 43467422 43467888 + 2.25 NA intron (NM_001346464, intron 12 of 13) L1ME1|LINE|L1 -115693 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 501 chr10 61957261 61957668 + 2.25 NA intron (NM_032199, intron 3 of 9) AluSx|SINE|Alu 55765 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 321.25-7 chr7 46923956 46924155 + 2.25 NA Intergenic L1M2|LINE|L1 -226933 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 184.25-32 chr3 176301776 176301950 + 2.25 NA Intergenic Intergenic 57312 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 285.75-23 chr8 118165199 118165416 + 2.25 NA intron (NR_146234, intron 4 of 5) MER21C|LTR|ERVL -53488 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 440.25-2 chr11 90635424 90635769 + 2.25 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -79739 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 288-4 chr12 70774716 70774873 + 2.25 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) 14126 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 664 chr4 134957910 134958343 + 2.25 NA Intergenic Intergenic 165433 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 326-6 chr14 56206593 56206745 + 2.25 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 88258 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 434.25 chr2 57088609 57088991 + 2.25 NA Intergenic L1M4|LINE|L1 -818851 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 307.5-3 chr12 54528204 54528425 + 2.25 NA exon (NM_005337, exon 22 of 31) exon (NM_005337, exon 22 of 31) -21079 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 192.75-44 chr8 34149245 34149437 + 2.25 NA Intergenic L1MD|LINE|L1 -549235 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 402.75-6 chr8 64793469 64793757 + 2.25 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 5124 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 320.5-7 chr14 99829788 99829990 + 2.25 NA intron (NM_004434, intron 1 of 21) L1MB4|LINE|L1 36476 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 345.25-6 chr5 132511789 132512237 + 2.25 NA Intergenic L1M4|LINE|L1 -21240 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 333.75-2 chr19 49930233 49930410 + 2.25 NA promoter-TSS (NM_001258017) promoter-TSS (NM_001258017) 117 NM_001290746 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 180-14 chr11 13123524 13123646 + 2.25 NA Intergenic L1MC3|LINE|L1 114269 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 242-6 chr11 6561519 6561664 + 2.25 NA intron (NM_144666, intron 28 of 42) intron (NM_144666, intron 28 of 42) 42025 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 261.5-25 chr5 123349324 123349501 + 2.25 NA intron (NM_153223, intron 20 of 20) MIRb|SINE|MIR 74180 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 431 chr16 73754817 73755175 + 2.25 NA Intergenic MIR|SINE|MIR 368191 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 435-3 chr7 92649575 92649940 + 2.25 NA intron (NM_001259, intron 5 of 7) MIR|SINE|MIR -59367 NM_152789 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 288.25-2 chr10 94003521 94003661 + 2.25 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 9660 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 155-64 chr9 29362436 29362534 + 2.25 NA Intergenic Intergenic -148884 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 504.75 chr2 113790349 113790641 + 2.25 NA Intergenic MLT1H1|LTR|ERVL-MaLR -33853 NM_025181 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 263.25-19 chr7 100528221 100528416 + 2.25 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -10885 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 346-12 chr5 41671288 41671447 + 2.25 NA Intergenic Intergenic -160766 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 386.5-6 chr5 171919140 171919447 + 2.25 NA intron (NM_033644, intron 1 of 12) MER5B|DNA|hAT-Charlie 87580 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 390 chr11 15624442 15624725 + 2.25 NA Intergenic Intergenic -19302 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 378.75-4 chr8 114025577 114025766 + 2.25 NA Intergenic Intergenic -588732 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 344.25-2 chr15 26545605 26545882 + 2.25 NA 3' UTR (NM_021912, exon 9 of 9) 3' UTR (NM_021912, exon 9 of 9) 83347 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 267.25-14 chr7 91547404 91547573 + 2.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 283055 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 369-9 chr3 119837591 119837831 + 2.25 NA intron (NM_001354596, intron 9 of 9) intron (NM_001354596, intron 9 of 9) 55001 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 368.25-7 chr8 118695100 118695345 + 2.25 NA intron (NR_038210, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR -73259 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 254.75-7 chr12 42140541 42140696 + 2.25 NA intron (NM_173601, intron 1 of 7) intron (NM_173601, intron 1 of 7) 4256 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 257-17 chr6 38252396 38252547 + 2.25 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -229125 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 314.25-4 chr11 14761144 14761309 + 2.25 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 117422 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 231-42 chr8 67030131 67030298 + 2.25 NA Intergenic Intergenic -1660 NM_001364912 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 223.5-61 chr5 9036548 9036809 + 2.25 NA 3' UTR (NM_003966, exon 23 of 23) 3' UTR (NM_003966, exon 23 of 23) 17217 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 305.75-9 chr21 20840620 20841006 + 2.25 NA Intergenic FLAM_A|SINE|Alu -37705 NR_109788 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 466-3 chr9 89748297 89748584 + 2.25 NA Intergenic Intergenic 108657 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 297.75-20 chr8 24930373 24930701 + 2.25 NA Intergenic LTR33A|LTR|ERVL 15550 NM_001105541 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 289.5-5 chr13 86706170 86706377 + 2.25 NA Intergenic Intergenic -205647 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 307.25-3 chr15 67830410 67830606 + 2.25 NA intron (NM_001365915, intron 4 of 8) intron (NM_001365915, intron 4 of 8) 4999 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 261-20 chr18 76901325 76901516 + 2.25 NA intron (NM_001306089, intron 11 of 30) intron (NM_001306089, intron 11 of 30) 77260 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 356.25-4 chr11 108570138 108570347 + 2.25 NA intron (NM_015065, intron 1 of 5) intron (NM_015065, intron 1 of 5) -18013 NM_001144763 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 423.25 chr7 26253282 26253658 + 2.25 NA Intergenic L1M5|LINE|L1 -38408 NM_001362754 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 394-4 chr17 40633621 40633852 + 2.25 NA intron (NM_003079, intron 7 of 10) intron (NM_003079, intron 7 of 10) 14082 NM_003079 6605 Hs.743978 NM_003079 ENSG00000073584 SMARCE1 BAF57|CSS5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 protein-coding 262.5-39 chr8 88549692 88549811 + 2.25 NA Intergenic Intergenic -222268 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 243.25-8 chr21 14959842 14960031 + 2.25 NA Intergenic Intergenic -41268 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 251.25-20 chr21 30530273 30530497 + 2.25 NA Intergenic Intergenic 11479 NM_181612 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 424.75 chr8 92668698 92669022 + 2.25 NA Intergenic Intergenic -13366 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 292-6 chr17 26815805 26815990 + 2.25 NA Intergenic Intergenic 273344 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 339.25 chr14 63671483 63671655 + 2.25 NA Intergenic Intergenic -29698 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 255.5-25 chr5 72018323 72018584 + 2.25 NA Intergenic MIRc|SINE|MIR -89022 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 261.5-26 chr5 130122109 130122246 + 2.25 NA intron (NM_175856, intron 2 of 2) (ATAC)n|Simple_repeat|Simple_repeat 217712 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 287.5-29 chr9 27542152 27542511 + 2.25 NA Intergenic Intergenic -12517 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 259.5-8 chr11 80220414 80220619 + 2.25 NA Intergenic L1MA5|LINE|L1 542287 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 417.75 chr12 14056657 14056900 + 2.25 NA Intergenic Intergenic -76422 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 413-2 chr2 67711865 67712085 + 2.25 NA Intergenic Intergenic 113587 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 307.25-12 chr9 100864244 100864463 + 2.25 NA Intergenic MIR|SINE|MIR -164374 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 570 chr5 115309985 115310464 + 2.25 NA Intergenic Intergenic -13570 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 195.75-22 chr18 77506884 77507022 + 2.25 NA Intergenic Intergenic 257105 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 298.75-14 chrX 142815328 142815496 + 2.25 NA Intergenic L1MC4a|LINE|L1 -210516 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 237.5-35 chr5 115789495 115789674 + 2.25 NA Intergenic L1MB8|LINE|L1 27073 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 246-28 chr6 153372716 153372855 + 2.25 NA Intergenic Intergenic -241503 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 292.5-9 chr5 58186501 58186774 + 2.25 NA Intergenic Intergenic -64296 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 302.25-8 chr2 149857676 149857896 + 2.25 NA non-coding (NR_145421, exon 2 of 5) non-coding (NR_145421, exon 2 of 5) 1405 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 218.5-23 chr2 55742367 55742495 + 2.25 NA Intergenic Intergenic -48587 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 297.5-14 chr8 134641528 134641780 + 2.25 NA intron (NM_020863, intron 2 of 15) intron (NM_020863, intron 2 of 15) 43583 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 336-3 chr12 14904123 14904416 + 2.25 NA Intergenic LTR1|LTR|ERV1 -18415 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 316.25-6 chr6 53587745 53587938 + 2.25 NA Intergenic Intergenic -14566 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 255.75-18 chr20 47503924 47504119 + 2.25 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 2134 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 266.25-8 chr15 66985726 66985916 + 2.25 NA intron (NR_135686, intron 4 of 5) intron (NR_135686, intron 4 of 5) -29306 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 228.75-35 chr7 98566463 98566613 + 2.25 NA Intergenic Intergenic -50747 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 280-26 chr9 21442417 21442585 + 2.25 NA Intergenic L2|LINE|L2 2062 NM_024013 3439 Hs.37026 NM_024013 ENSG00000197919 IFNA1 IFL|IFN|IFN-ALPHA|IFN-alphaD|IFNA13|IFNA@ interferon alpha 1 protein-coding 195.5-31 chr15 75725905 75726069 + 2.25 NA intron (NM_175881, intron 2 of 3) intron (NM_175881, intron 2 of 3) 1946 NM_175881 161753 Hs.144348 NM_175881 ENSG00000182950 ODF3L1 - outer dense fiber of sperm tails 3 like 1 protein-coding 337.25-11 chr7 93467060 93467280 + 2.25 NA intron (NM_001164737, intron 8 of 15) intron (NM_001164737, intron 8 of 15) 15685 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 358.5-2 chr10 61526595 61526784 + 2.25 NA Intergenic L1PB4|LINE|L1 46648 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 191.75-27 chr3 24499071 24499234 + 2.25 NA intron (NR_046244, intron 1 of 1) MIRb|SINE|MIR -3444 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 451.75-3 chr5 98057641 98057971 + 2.25 NA Intergenic Intergenic 103433 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 188-43 chr8 83699894 83699999 + 2.25 NA Intergenic Intergenic 296188 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 220.5-38 chr6 55326874 55327078 + 2.25 NA promoter-TSS (NM_207410) promoter-TSS (NM_207410) -493 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 253.75-22 chr8 120366957 120367177 + 2.25 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 78083 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 230.5-23 chr17 32558336 32558517 + 2.25 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 71433 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 386 chr1 49150043 49150371 + 2.25 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -107204 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 417.5-5 chr7 25522975 25523271 + 2.25 NA Intergenic MER21B|LTR|ERVL 140017 NR_157826 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 276.25-4 chr15 63156506 63156675 + 2.25 NA intron (NM_015920, intron 1 of 3) intron (NM_015920, intron 1 of 3) 887 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 390.75-2 chr14 86430122 86430383 + 2.25 NA Intergenic L1M5|LINE|L1 -475526 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 331.75-5 chr2 13615302 13615468 + 2.25 NA Intergenic Intergenic -608372 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 227.5-6 chr1 116435377 116435564 + 2.25 NA intron (NR_125972, intron 2 of 3) L1MD1|LINE|L1 -16848 NR_027646 84852 Hs.664752 NM_032766 ENSG00000203865 ATP1A1-AS1 ATP1A1OS|C1orf203 ATP1A1 antisense RNA 1 ncRNA 335-8 chr4 76849199 76849460 + 2.25 NA Intergenic L2a|LINE|L2 48815 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 309-22 chr8 138648828 138648984 + 2.25 NA intron (NM_152888, intron 46 of 64) MER67C|LTR|ERV1 -151176 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 291-14 chr8 40948015 40948235 + 2.25 NA Intergenic HAL1|LINE|L1 -50299 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 406.5-4 chr8 89797023 89797319 + 2.25 NA Intergenic MER41B|LTR|ERV1 39355 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 248.25-3 chr10 107983811 107983985 + 2.25 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 85395 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 268.25-22 chr8 79127670 79127860 + 2.25 NA Intergenic L2a|LINE|L2 -204423 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 219-2 chr1 28716810 28716957 + 2.25 NA 3' UTR (NM_006582, exon 10 of 10) 3' UTR (NM_006582, exon 10 of 10) -19738 NM_001173128 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 348.25-4 chr2 43647390 43647607 + 2.25 NA intron (NM_172069, intron 2 of 29) intron (NM_172069, intron 2 of 29) 10238 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 287.25-5 chr12 55114186 55114356 + 2.25 NA Intergenic Intergenic -15498 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 466.5 chr2 154781477 154781819 + 2.25 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 82953 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 303.5-3 chr10 63370524 63370721 + 2.25 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 2426 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 379-3 chr2 182948695 182948980 + 2.25 NA intron (NM_013436, intron 23 of 30) L3b|LINE|CR1 -82200 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 455.75 chr6 38115106 38115414 + 2.25 NA intron (NM_021943, intron 4 of 5) L2a|LINE|L2 295533 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 177.5-59 chr6 150987070 150987261 + 2.25 NA intron (NR_146720, intron 21 of 28) intron (NR_146720, intron 21 of 28) -19843 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 358-4 chr3 144520010 144520292 + 2.25 NA Intergenic Intergenic 547070 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 329.75-5 chr2 64107027 64107274 + 2.25 NA intron (NM_020651, intron 2 of 6) AluSx|SINE|Alu 37270 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 415.75 chr1 226261424 226261749 + 2.25 NA intron (NM_001366239, intron 9 of 13) L1MC1|LINE|L1 37922 NM_031944 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 362.25-5 chr2 64193001 64193229 + 2.25 NA intron (NR_033837, intron 3 of 5) intron (NR_033837, intron 3 of 5) 12370 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 397.75-4 chr7 26215762 26216115 + 2.25 NA Intergenic Intergenic 14193 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 170.75-29 chr17 32376691 32376810 + 2.25 NA Intergenic (TTATGT)n|Simple_repeat|Simple_repeat 26612 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 265.5 chr1 115614572 115614839 + 2.25 NA Intergenic Intergenic -27265 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 289.75-6 chr15 51037705 51037942 + 2.25 NA intron (NR_146310, intron 1 of 2) L1M2|LINE|L1 335 NR_146310 109729174 NR_146310 ENSG00000259240 MIR4713HG - MIR4713 host gene ncRNA 340.5-8 chr5 63286249 63286490 + 2.25 NA Intergenic L3|LINE|CR1 675923 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 324.25-3 chr18 3234301 3234516 + 2.25 NA Intergenic Intergenic -13074 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 419.5-2 chr20 23398309 23398534 + 2.25 NA intron (NM_001283018, intron 2 of 10) AluJb|SINE|Alu 23067 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 238.5-12 chr13 73587171 73587348 + 2.25 NA intron (NR_047009, intron 1 of 2) intron (NR_047009, intron 1 of 2) 23015 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 247.5-46 chr8 127486339 127486480 + 2.25 NA Intergenic L1ME1|LINE|L1 -4270 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 282.75-8 chr17 69273734 69273867 + 2.25 NA intron (NM_018672, intron 19 of 37) intron (NM_018672, intron 19 of 37) -28985 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 576.75 chr1 214224653 214224967 + 2.25 NA Intergenic Intergenic -56349 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 195.5-65 chr4 88977732 88977844 + 2.25 NA intron (NM_014883, intron 4 of 23) intron (NM_014883, intron 4 of 23) 79397 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 277.25-6 chr11 59221110 59221233 + 2.25 NA Intergenic LTR16D|LTR|ERVL -8244 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 171-20 chr14 30451303 30451428 + 2.25 NA intron (NR_151720, intron 3 of 3) intron (NR_151720, intron 3 of 3) -107758 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 288-2 chr11 13890385 13890633 + 2.25 NA Intergenic Intergenic -19893 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 352 chr1 213041940 213042116 + 2.25 NA Intergenic L1M4|LINE|L1 -9205 NM_001349654 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 352.5-9 chr5 16799553 16799849 + 2.25 NA intron (NM_012334, intron 3 of 40) AluSx|SINE|Alu 136587 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 346.5-2 chr10 51038393 51038600 + 2.25 NA intron (NM_001098512, intron 1 of 17) L1MA3|LINE|L1 30056 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 303.75-8 chr8 101096040 101096238 + 2.25 NA Intergenic Intergenic 44085 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 299.75-7 chr5 123902746 123902946 + 2.25 NA Intergenic Intergenic 357429 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 337 chr10 34652319 34652620 + 2.25 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 162827 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 250.75-20 chr6 7604507 7604799 + 2.25 NA intron (NM_152551, intron 6 of 8) intron (NM_152551, intron 6 of 8) 14455 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 389-5 chr5 17264497 17264777 + 2.25 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 47006 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 395.25-6 chr6 48088408 48088676 + 2.25 NA Intergenic Intergenic -19853 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 205.5-46 chr5 106437762 106437920 + 2.25 NA Intergenic L1MA3|LINE|L1 573173 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 419.5-4 chr7 94576884 94577254 + 2.25 NA Intergenic L1M4|LINE|L1 67260 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 216.25-18 chr2 36865987 36866154 + 2.25 NA intron (NM_003162, intron 12 of 17) L1PA14|LINE|L1 100466 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 232-6 chr13 78844524 78844688 + 2.25 NA Intergenic Intergenic -4556 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 212.5-22 chr16 82676796 82676914 + 2.25 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -12076 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 293.25-12 chr4 121968228 121968458 + 2.25 NA Intergenic Intergenic -16283 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 342.5-4 chr12 30479342 30479569 + 2.25 NA Intergenic Intergenic 197789 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 363-2 chr10 81254906 81255129 + 2.25 NA Intergenic Intergenic 605220 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 282.25-3 chr10 49810689 49810893 + 2.25 NA Intergenic L1MC1|LINE|L1 -48412 NM_001143996 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 314.25-9 chr5 104845846 104846118 + 2.25 NA Intergenic Intergenic -253492 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 326.25-9 chr2 181847010 181847320 + 2.25 NA Intergenic MER58B|DNA|hAT-Charlie -44565 NM_001130445 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 385.25-5 chr3 121282540 121282794 + 2.25 NA intron (NM_001348343, intron 20 of 27) intron (NM_001348343, intron 20 of 27) 233027 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 309.5-10 chr2 168201898 168202139 + 2.25 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 45577 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 283.5-17 chr5 84797461 84797671 + 2.25 NA Intergenic Intergenic -412686 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 198-51 chrX 154998348 154998511 + 2.25 NA intron (NM_000132, intron 2 of 25) LTR78B|LTR|ERV1 24294 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 251.25-18 chr2 155221514 155221730 + 2.25 NA Intergenic L1M5|LINE|L1 522927 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 261-45 chr8 92082452 92082662 + 2.25 NA intron (NM_001198627, intron 2 of 13) intron (NM_001198627, intron 2 of 13) 12673 NM_001198629 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 298.75-7 chr3 125313118 125313292 + 2.25 NA intron (NM_001348436, intron 5 of 8) intron (NM_001348436, intron 5 of 8) 44075 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 198.75-11 chr14 60025679 60025937 + 2.25 NA intron (NR_075071, intron 27 of 32) intron (NR_075071, intron 27 of 32) -66103 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 324.75-8 chr2 19746104 19746338 + 2.25 NA Intergenic Intergenic -122633 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 142.5-40 chr2 44607375 44607462 + 2.25 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 245471 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 210.5-60 chr8 136782864 136783001 + 2.25 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 252134 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 232.5-22 chr2 190867630 190867789 + 2.25 NA Intergenic MER102c|DNA|hAT-Charlie -13112 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 287.25-7 chr14 76664206 76664400 + 2.25 NA Intergenic MER33|DNA|hAT-Charlie -97165 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 222-14 chr14 67742456 67742659 + 2.25 NA Intergenic Intergenic 40671 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 319.5-9 chr20 18709277 18709518 + 2.25 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -10689 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 280-11 chr16 5348654 5348833 + 2.25 NA Intergenic Intergenic -250923 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 421.5-3 chr7 88954054 88954274 + 2.25 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -158427 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 237.25-22 chr4 70095041 70095242 + 2.25 NA Intergenic MIR|SINE|MIR 27755 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 436.5-2 chr17 64755874 64756095 + 2.25 NA intron (NR_026899, intron 8 of 12) intron (NR_026899, intron 8 of 12) -24775 NR_106728 102464831 NR_106728 ENSG00000278581 MIR6080 hsa-mir-6080 microRNA 6080 ncRNA 280.5-18 chr21 14489299 14489436 + 2.25 NA intron (NM_022136, intron 7 of 7) intron (NM_022136, intron 7 of 7) 56948 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 336-16 chr9 108637366 108637534 + 2.25 NA Intergenic Intergenic 218536 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 251.25-27 chr7 21254466 21254606 + 2.25 NA Intergenic Intergenic -173547 NM_003112 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 289.75-5 chr12 103890138 103890332 + 2.25 NA intron (NR_027249, intron 6 of 15) intron (NR_027249, intron 6 of 15) 39976 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 217.5-12 chr14 56540293 56540422 + 2.25 NA intron (NR_135241, intron 1 of 1) MIR3|SINE|MIR 26026 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 195-64 chr8 131398988 131399097 + 2.25 NA Intergenic Intergenic -358133 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 167.25-63 chr5 77752001 77752119 + 2.25 NA intron (NM_004607, intron 1 of 3) MER4B-int|LTR|ERV1 24279 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 376-3 chr2 161084792 161085022 + 2.25 NA Intergenic Intergenic -52048 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 363.5-4 chr17 76144167 76144620 + 2.25 NA 3' UTR (NM_001330501, exon 18 of 18) 3' UTR (NM_001330501, exon 18 of 18) -3148 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 436.75-2 chr9 30891020 30891306 + 2.25 NA Intergenic Intergenic -482709 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 208.75-28 chr7 122844624 122844770 + 2.25 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 41763 NM_001363394 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 261-12 chr14 22436035 22436162 + 2.25 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) -3345 NR_148363 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 322.25-7 chr15 27232281 27232508 + 2.25 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -71075 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 412-4 chr7 24541273 24541485 + 2.25 NA Intergenic L1MB8|LINE|L1 -32073 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 326-2 chr1 68798901 68799179 + 2.25 NA Intergenic Intergenic -256858 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 359.25-9 chr6 89294441 89294773 + 2.25 NA intron (NM_002043, intron 2 of 8) intron (NM_002043, intron 2 of 8) 20692 NM_002043 2570 Hs.379330 NM_002043 ENSG00000111886 GABRR2 - gamma-aminobutyric acid type A receptor rho2 subunit protein-coding 249-38 chr7 87685211 87685382 + 2.25 NA intron (NM_001134406, intron 2 of 9) L1ME1|LINE|L1 28027 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 291.25-19 chr5 73791968 73792157 + 2.25 NA intron (NM_001177693, intron 7 of 35) intron (NM_001177693, intron 7 of 35) -21484 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 396.5-5 chr3 41211769 41211994 + 2.25 NA intron (NM_001904, intron 1 of 14) L2b|LINE|L2 12376 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 260.25-12 chr20 15828014 15828169 + 2.25 NA intron (NM_001351663, intron 8 of 17) L1MA7|LINE|L1 95223 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 242.25-14 chr2 78597741 78597913 + 2.25 NA Intergenic Intergenic 52296 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 330.5-4 chr14 36197183 36197455 + 2.25 NA Intergenic Intergenic -20668 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 447 chr10 108030496 108030798 + 2.25 NA intron (NR_125760, intron 4 of 4) L1M4c|LINE|L1 38646 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 243-7 chr14 29167500 29167713 + 2.25 NA Intergenic Intergenic -381819 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 359.75-7 chr5 91332924 91333154 + 2.25 NA Intergenic Tigger17a|DNA|TcMar-Tigger -18637 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 546.75 chr3 158415497 158415971 + 2.25 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -110974 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 140-65 chr8 115490005 115490092 + 2.25 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 177965 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 313-9 chr2 20734457 20734612 + 2.25 NA intron (NR_104233, intron 3 of 4) L1MD1|LINE|L1 67390 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 213.75-36 chr5 44799131 44799257 + 2.25 NA intron (NR_109863, intron 1 of 3) intron (NR_109863, intron 1 of 3) 9599 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 320.5-5 chr14 60795044 60795225 + 2.25 NA intron (NM_001177963, intron 1 of 6) Zaphod|DNA|hAT-Tip100 60373 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 326.25-8 chr2 142773847 142774115 + 2.25 NA Intergenic L1MA2|LINE|L1 -103683 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 306.25-4 chr11 87825727 87825993 + 2.25 NA Intergenic HAL1|LINE|L1 -106449 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 246.75 chr1 98010279 98010479 + 2.25 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 34972 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 299.25-5 chr17 62075634 62075852 + 2.25 NA Intergenic MLT1F|LTR|ERVL-MaLR -10465 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 230.25-22 chr4 60521873 60522052 + 2.25 NA Intergenic Intergenic -400657 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 285-15 chr4 47965900 47966133 + 2.25 NA intron (NR_125879, intron 2 of 2) intron (NR_125879, intron 2 of 2) 15517 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 382-6 chr8 124151254 124151475 + 2.25 NA intron (NR_103547, intron 1 of 4) L1MEg|LINE|L1 20158 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 226.5-48 chr8 28679454 28679631 + 2.25 NA Intergenic AluJr|SINE|Alu 21922 NR_126027 101929402 Hs.667366 NR_126027 ENSG00000246339 EXTL3-AS1 C8orf50 EXTL3 antisense RNA 1 ncRNA 211.75-7 chr10 100292612 100292780 + 2.25 NA intron (NM_016112, intron 11 of 15) intron (NM_016112, intron 11 of 15) -5984 NM_001282439 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 296.75-3 chr2 60704303 60704441 + 2.25 NA Intergenic L1MEi|LINE|L1 -51896 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 309.75 chr1 177856220 177856477 + 2.25 NA Intergenic AluSq|SINE|Alu 113574 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 304.75-5 chr18 1868078 1868249 + 2.25 NA Intergenic Intergenic -508534 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 176.25-23 chr15 90407488 90407588 + 2.25 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 19296 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 420.25 chr6 41121790 41122271 + 2.25 NA intron (NR_026938, intron 14 of 22) intron (NR_026938, intron 14 of 22) 20996 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - ADCY10 pseudogene 1 pseudo 275.5-5 chr11 24863950 24864153 + 2.25 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 366998 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 382.75-2 chr7 47262846 47263167 + 2.25 NA Intergenic Intergenic 201797 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 286.5 chr1 200193632 200193806 + 2.25 NA Intergenic Intergenic 150894 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 242-30 chr4 122334613 122334785 + 2.25 NA intron (NM_015312, intron 67 of 83) intron (NM_015312, intron 67 of 83) -44312 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 339.75-5 chr14 39371059 39371299 + 2.25 NA intron (NM_001354155, intron 22 of 22) L1ME4c|LINE|L1 61321 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 281-4 chr10 96265807 96266187 + 2.25 NA intron (NM_013314, intron 1 of 16) intron (NM_013314, intron 1 of 16) 5519 NR_047680 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 498.5 chr10 13338597 13339094 + 2.25 NA intron (NM_001195602, intron 1 of 7) intron (NM_001195602, intron 1 of 7) 9448 NM_012247 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 225.75-5 chr1 220784324 220784532 + 2.25 NA 3' UTR (NM_001331042, exon 5 of 5) 3' UTR (NM_001331042, exon 5 of 5) -2485 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 262.5-6 chr12 30665185 30665403 + 2.25 NA exon (NM_001190995, exon 9 of 21) exon (NM_001190995, exon 9 of 21) 11950 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 397.5 chr15 79843483 79843714 + 2.25 NA TTS (NM_006441) TTS (NM_006441) 53399 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 305.5-10 chr2 157701682 157701845 + 2.25 NA Intergenic L1MA4A|LINE|L1 -72899 NM_001111032 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 190.75-28 chr19 30418265 30418402 + 2.25 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 45949 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 321.5-2 chr1 185723566 185723851 + 2.25 NA Intergenic L1MC3|LINE|L1 -10683 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 317.25-8 chr14 67078455 67078749 + 2.25 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -110838 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 488-4 chr6 146955889 146956262 + 2.25 NA intron (NR_034115, intron 7 of 10) MER53|DNA|hAT -152251 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 243-3 chr1 174009114 174009336 + 2.25 NA Intergenic Intergenic -16153 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 359.5-9 chr7 9873082 9873336 + 2.25 NA Intergenic Intergenic 238939 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 177.75-2 chr10 21451517 21451674 + 2.25 NA Intergenic MER41A|LTR|ERV1 45046 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 383.75 chr1 165387780 165388090 + 2.25 NA Intergenic Intergenic -31220 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 196.5-33 chr16 87732550 87732670 + 2.25 NA intron (NM_001351938, intron 4 of 10) L1ME4c|LINE|L1 33376 NR_147833 54758 Hs.123450 NM_017566 ENSG00000104731 KLHDC4 - kelch domain containing 4 protein-coding 322.5-18 chr4 65588617 65588771 + 2.25 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 80794 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 298.75-12 chr8 130558846 130559069 + 2.25 NA Intergenic Intergenic -115283 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 269.5-14 chr16 6405938 6406127 + 2.25 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -367777 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 355.25-6 chr18 4071237 4071724 + 2.25 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 109127 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 409-5 chr7 62758193 62758393 + 2.25 NA Intergenic ALR/Alpha|Satellite|centr 545763 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 234.25-33 chr8 34329701 34329892 + 2.25 NA Intergenic Intergenic -454125 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 313.5 chr10 105337759 105337905 + 2.25 NA Intergenic L1MB3|LINE|L1 482501 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 303-11 chr4 111508481 111508692 + 2.25 NA Intergenic Intergenic -636868 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 422-3 chr20 20351021 20351278 + 2.25 NA intron (NM_015585, intron 26 of 26) L1MA8|LINE|L1 -16955 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 393.75-6 chr4 8391740 8391986 + 2.25 NA intron (NM_003501, intron 11 of 17) intron (NM_003501, intron 11 of 17) 48860 NM_003501 8310 Hs.479122 NM_003501 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 407.25-5 chr4 58324739 58324993 + 2.25 NA Intergenic Intergenic 211462 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 282-2 chr1 115119505 115119765 + 2.25 NA Intergenic MSTA-int|LTR|ERVL-MaLR -30132 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 276-21 chr9 86484689 86484876 + 2.25 NA Intergenic LTR104_Mam|LTR|Gypsy -130372 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 378.25-2 chr2 167275555 167275917 + 2.25 NA Intergenic Intergenic 88364 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 168.25-37 chr22 28227506 28227597 + 2.25 NA intron (NM_001145418, intron 5 of 22) L1MB3|LINE|L1 -232318 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 347-10 chr8 137591813 137592071 + 2.25 NA Intergenic Intergenic -178354 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 380.75-3 chr20 24541446 24541699 + 2.25 NA intron (NM_001323606, intron 2 of 4) intron (NM_001323606, intron 2 of 4) 71611 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 342.5-8 chr6 47826729 47827056 + 2.25 NA TTS (NM_181744) TTS (NM_181744) 39824 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 387.5-2 chr11 127533627 127533831 + 2.25 NA Intergenic L1MB1|LINE|L1 262659 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 368.25-4 chr8 10216814 10217004 + 2.25 NA intron (NM_001135670, intron 2 of 4) L1MB3|LINE|L1 121258 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 368.25-9 chr9 22385970 22386271 + 2.25 NA Intergenic Intergenic -60704 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 345-5 chr14 88920062 88920337 + 2.25 NA Intergenic L1MD|LINE|L1 95548 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 471-2 chr3 98058099 98058446 + 2.25 NA Intergenic Intergenic -22968 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 242.25-28 chr7 79609898 79610064 + 2.25 NA Intergenic Zaphod|DNA|hAT-Tip100 156021 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 455 chr10 61507856 61508222 + 2.25 NA Intergenic L1MDa|LINE|L1 27998 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 351.75 chr10 43552366 43552635 + 2.25 NA Intergenic L1M4|LINE|L1 15959 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 366-9 chr4 52833740 52833951 + 2.25 NA Intergenic Intergenic -28472 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 254-11 chr4 94110321 94110433 + 2.25 NA Intergenic L1MC3|LINE|L1 97179 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 259.5-13 chr18 12655395 12655557 + 2.25 NA intron (NM_020148, intron 1 of 15) intron (NM_020148, intron 1 of 15) 1256 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 311-14 chr5 30905658 30905866 + 2.25 NA Intergenic Intergenic -287924 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 497.5 chr3 87733028 87733325 + 2.25 NA Intergenic Zaphod|DNA|hAT-Tip100 -59530 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 208-19 chr2 165535776 165535977 + 2.25 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -36460 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 339-9 chr6 50444373 50444540 + 2.25 NA Intergenic Intergenic -269088 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 224.25-7 chr12 112217178 112217299 + 2.25 NA intron (NM_001109662, intron 45 of 75) intron (NM_001109662, intron 45 of 75) -53917 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 389.5-3 chr2 105227863 105228196 + 2.25 NA Intergenic MIRb|SINE|MIR -13714 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 265-21 chr5 82558064 82558298 + 2.25 NA Intergenic L1MB1|LINE|L1 278719 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 275.75-22 chr7 93088639 93088796 + 2.25 NA Intergenic L1M1|LINE|L1 29262 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 316.5-10 chr20 7609180 7609395 + 2.25 NA Intergenic Intergenic 237679 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 478.5-2 chr5 7852669 7853050 + 2.25 NA Intergenic Intergenic -1726 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 497.25-2 chr2 29412680 29412993 + 2.25 NA intron (NM_004304, intron 4 of 28) Tigger3|DNA|TcMar-Tigger 62541 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 329.75-9 chr8 86529700 86529999 + 2.25 NA intron (NM_003909, intron 4 of 16) intron (NM_003909, intron 4 of 16) 15414 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 231-16 chr16 5388424 5388542 + 2.25 NA Intergenic MER58D|DNA|hAT-Charlie 227767 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 277.25-4 chr1 197024226 197024479 + 2.25 NA Intergenic L2|LINE|L2 42915 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 405-4 chr20 46517762 46518234 + 2.25 NA Intergenic Intergenic -4426 NM_001353822 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 236.25-4 chr10 16420188 16420343 + 2.25 NA Intergenic Intergenic -16678 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 498.75-2 chr8 137721069 137721468 + 2.25 NA Intergenic L1MD|LINE|L1 -307680 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 694.5-2 chr9 28217781 28218495 + 2.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 501167 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 337.75-7 chr21 35577593 35577897 + 2.25 NA intron (NR_073512, intron 1 of 2) MER5C1|DNA|hAT-Charlie 3019 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 275.25-11 chr18 9998681 9998901 + 2.25 NA Intergenic L1M2|LINE|L1 84775 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 303.25 chr1 215654706 215654963 + 2.25 NA intron (NM_206933, intron 64 of 71) intron (NM_206933, intron 64 of 71) 87530 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 277.5-10 chr17 71164202 71164433 + 2.25 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 37862 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 295.5-15 chr20 20798376 20798610 + 2.25 NA Intergenic L1ME2|LINE|L1 -85849 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 359.75-6 chr3 84554289 84554623 + 2.25 NA Intergenic MIRb|SINE|MIR 315119 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 283-11 chr3 95012240 95012509 + 2.25 NA Intergenic Intergenic 74111 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 247.5-40 chr8 90296436 90296639 + 2.25 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 75049 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 454.75 chr11 28286658 28286962 + 2.25 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 178422 NM_152636 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 356-4 chr5 172714906 172715206 + 2.25 NA Intergenic Intergenic -40447 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 213-35 chr4 86343810 86343954 + 2.25 NA intron (NM_001363657, intron 2 of 13) Charlie1b|DNA|hAT-Charlie 10762 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 339.75 chr1 73762181 73762359 + 2.25 NA Intergenic Intergenic 87591 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 278.75-2 chr11 115199760 115199923 + 2.25 NA intron (NM_001301045, intron 7 of 10) intron (NM_001301045, intron 7 of 10) -133736 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 368.25 chr6 38382712 38383012 + 2.25 NA intron (NM_052893, intron 7 of 11) L1MEd|LINE|L1 -98734 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 445.75 chr10 70855339 70855729 + 2.25 NA intron (NM_003901, intron 5 of 14) MIR|SINE|MIR 32347 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 286.5-10 chr20 38665563 38665711 + 2.25 NA Intergenic MADE2|DNA|TcMar-Mariner -58849 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 217.5-11 chr14 40366277 40366430 + 2.25 NA Intergenic Intergenic -588358 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 199.75-2 chr10 29016236 29016393 + 2.25 NA Intergenic Intergenic 169906 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 398.25 chr20 9628527 9628945 + 2.25 NA intron (NM_020341, intron 4 of 10) LTR16C|LTR|ERVL -113738 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 323.25-13 chr8 78734324 78734560 + 2.25 NA intron (NM_001199888, intron 3 of 3) intron (NM_001199888, intron 3 of 3) -10068 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 174-12 chr13 39765559 39765717 + 2.25 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -101503 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 340-8 chr5 118047229 118047480 + 2.25 NA intron (NR_104997, intron 2 of 2) L1ME1|LINE|L1 -235220 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 264.5-5 chr11 112460357 112460782 + 2.25 NA Intergenic L1MEd|LINE|L1 -21663 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 442.5-2 chr21 17078458 17078916 + 2.25 NA Intergenic Intergenic -360203 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 284-3 chr10 6731609 6731800 + 2.25 NA Intergenic Intergenic -5678 NR_138480 108570035 Hs.568834 NR_138480 LINP1 - lncRNA in non-homologous end joining pathway 1 ncRNA 195.75-23 chr2 108025138 108025238 + 2.25 NA Intergenic Intergenic 27567 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 298.5-14 chr2 61649165 61649320 + 2.25 NA Intergenic LOR1b|LTR|ERV1 -110886 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 248.25-26 chr3 153589055 153589253 + 2.25 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 104659 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 301.25-6 chr4 115721652 115721833 + 2.25 NA Intergenic HAL1|LINE|L1 -577983 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 321.5-6 chr14 31968223 31968458 + 2.25 NA Intergenic Intergenic 23487 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 336-2 chr10 58121389 58121724 + 2.25 NA Intergenic L1M5|LINE|L1 146338 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 229.5-49 chr8 79343737 79343845 + 2.25 NA Intergenic L2c|LINE|L2 11603 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 497.25-3 chr6 154601500 154601866 + 2.25 NA Intergenic AluJr|SINE|Alu -90998 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 271.5-8 chr16 80218087 80218404 + 2.25 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -322489 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 232.25-15 chr2 72570828 72571021 + 2.25 NA intron (NR_135774, intron 7 of 19) MIRb|SINE|MIR 255109 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 350.25-12 chr8 82977924 82978211 + 2.25 NA Intergenic Intergenic 65963 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 311.75-9 chr4 101250948 101251164 + 2.25 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) -10184 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 477.75 chr13 64362739 64362998 + 2.25 NA Intergenic HERVL-int|LTR|ERVL -286857 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 272-14 chr18 68037098 68037224 + 2.25 NA Intergenic Intergenic -222339 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 275.5-3 chr10 110851595 110851776 + 2.25 NA Intergenic Cheshire|DNA|hAT-Charlie 19219 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 261-41 chr7 16075616 16075864 + 2.25 NA Intergenic Intergenic -134746 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 307.75-3 chr15 26765359 26765556 + 2.25 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 7609 NM_000814 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 207-47 chr6 110030889 110031091 + 2.25 NA Intergenic L1ME2|LINE|L1 52679 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 245.25-8 chr14 65493530 65493712 + 2.25 NA intron (NM_004480, intron 2 of 9) A-rich|Low_complexity|Low_complexity 22519 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 272.75-14 chr4 110288687 110288889 + 2.25 NA Intergenic AluJb|SINE|Alu -90173 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 293.5-18 chr5 9246630 9246813 + 2.25 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -192826 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 241.5-24 chr3 42551539 42551652 + 2.25 NA 3' UTR (NM_032970, exon 7 of 7) 3' UTR (NM_032970, exon 7 of 7) -18989 NR_046654 100874007 Hs.600642 NR_046654 VIPR1-AS1 - VIPR1 antisense RNA 1 ncRNA 173.5-103 chr8 126977424 126977569 + 2.25 NA Intergenic Intergenic -35658 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 366.75-3 chr2 78845804 78846016 + 2.25 NA Intergenic Intergenic -179792 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 216-20 chr2 63226285 63226450 + 2.25 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -106825 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 251.25-9 chr14 68217908 68218050 + 2.25 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 394387 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 302.75-7 chr5 121217933 121218209 + 2.25 NA Intergenic Intergenic -104479 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 337.25-6 chr3 164789349 164789587 + 2.25 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 42012 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 306.75-9 chr8 83771123 83771373 + 2.25 NA Intergenic Intergenic 367490 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 309.5-4 chr11 84004246 84004529 + 2.25 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 268893 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 174-7 chr10 8769318 8769449 + 2.25 NA Intergenic Intergenic -128606 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 393.75-4 chr14 80906231 80906621 + 2.25 NA intron (NM_152446, intron 4 of 24) L1M6|LINE|L1 35312 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 252.25-18 chr5 128955505 128955682 + 2.25 NA Intergenic L1MC5a|LINE|L1 -9534 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 265-17 chr2 137205665 137205792 + 2.25 NA intron (NM_001316349, intron 7 of 27) intron (NM_001316349, intron 7 of 27) 440183 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 214.5-10 chr11 125007945 125008099 + 2.25 NA intron (NM_025004, intron 13 of 15) L1MC1|LINE|L1 53820 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 455.25 chr8 33837143 33837473 + 2.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -237202 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 349.75-4 chr2 218918776 218919106 + 2.25 NA intron (NR_110238, intron 3 of 4) L1MEg|LINE|L1 11696 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 403.5 chr10 98817210 98817418 + 2.25 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 107254 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 273.75-13 chr5 53572988 53573143 + 2.25 NA intron (NR_134474, intron 1 of 5) AluJr|SINE|Alu 12426 NR_134473 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 303.5-8 chr17 71205382 71205604 + 2.25 NA Intergenic Tigger15a|DNA|TcMar-Tigger -3314 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 385.75 chr10 6417418 6417774 + 2.25 NA intron (NM_001323267, intron 17 of 17) intron (NM_001323267, intron 17 of 17) 67280 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 319-3 chr11 97085227 97085514 + 2.25 NA Intergenic Intergenic 576945 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 328.25-11 chr5 116931048 116931268 + 2.25 NA Intergenic Intergenic -168949 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 351-6 chr4 88847190 88847470 + 2.25 NA intron (NM_014883, intron 7 of 23) AluJb|SINE|Alu -23969 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 307.75-9 chr7 56091679 56091882 + 2.25 NA intron (NR_047689, intron 1 of 8) intron (NR_047689, intron 1 of 8) 1216 NM_001258459 5260 Hs.730821 NM_006213 ENSG00000164776 PHKG1 PHKG phosphorylase kinase catalytic subunit gamma 1 protein-coding 206.75-20 chr20 39018737 39018958 + 2.25 NA non-coding (NR_033905, exon 15 of 22) non-coding (NR_033905, exon 15 of 22) 56503 NM_021931 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 351.5-3 chr2 200753548 200753716 + 2.25 NA intron (NR_135012, intron 14 of 30) intron (NR_135012, intron 14 of 30) -18455 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 198.75-7 chr11 64732028 64732133 + 2.25 NA intron (NM_001098671, intron 12 of 16) L1ME3G|LINE|L1 -8883 NM_138732 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 354-9 chr5 27857744 27858026 + 2.25 NA Intergenic Intergenic 385593 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 248.25-4 chr11 11875112 11875270 + 2.25 NA intron (NM_001330208, intron 2 of 28) intron (NM_001330208, intron 2 of 28) 33768 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 218.75-20 chr2 119838564 119838666 + 2.25 NA intron (NM_002830, intron 2 of 26) intron (NM_002830, intron 2 of 26) 78693 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 216-42 chr8 26908157 26908318 + 2.25 NA Intergenic L1MB7|LINE|L1 -40959 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 325.5-9 chr4 39441250 39441651 + 2.25 NA intron (NM_175737, intron 3 of 4) intron (NM_175737, intron 3 of 4) 17498 NM_001024921 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 522.75 chr1 93394628 93394978 + 2.25 NA Intergenic LTR49-int|LTR|ERV1 48896 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 337.5-5 chr2 41471081 41471326 + 2.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR -406352 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 433.75-2 chr7 36586140 36586618 + 2.25 NA intron (NM_001177507, intron 11 of 19) L2|LINE|L2 13741 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 209.25-50 chr8 123617226 123617343 + 2.25 NA Intergenic L1MC4|LINE|L1 36517 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 287.25-12 chr3 52922799 52923060 + 2.25 NA intron (NM_016329, intron 10 of 20) HAL1|LINE|L1 -25381 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 297 chr1 53903212 53903442 + 2.25 NA intron (NM_001324316, intron 1 of 1) MER45C|DNA|hAT-Tip100 9140 NR_136693 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 287-22 chr8 118546868 118547070 + 2.25 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -74032 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 325.5-4 chr11 97262984 97263225 + 2.25 NA Intergenic Intergenic 754679 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 325.5-6 chr14 51212753 51213014 + 2.25 NA Intergenic Intergenic -27364 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 354.75-4 chr18 5641679 5641904 + 2.25 NA Intergenic Intergenic -12800 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 260.25-10 chr2 112920183 112920355 + 2.25 NA Intergenic Intergenic 5076 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 394-5 chr4 153246440 153246773 + 2.25 NA intron (NM_001302693, intron 1 of 2) L2a|LINE|L2 -10753 NM_001302694 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 406.25-2 chr21 24401395 24401647 + 2.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -27219 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 267-9 chr16 10303327 10303486 + 2.25 NA Intergenic Intergenic -82655 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 413.25 chr14 60066141 60066771 + 2.25 NA Intergenic Intergenic -25455 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 262.5-7 chr13 40802939 40803188 + 2.25 NA intron (NR_038259, intron 5 of 5) intron (NR_038259, intron 5 of 5) -7703 NR_030352 693206 NR_030352 ENSG00000207652 MIR621 MIRN621|hsa-mir-621 microRNA 621 ncRNA 501.75 chr4 62429143 62429442 + 2.25 NA Intergenic Intergenic -267527 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 291.25-4 chr10 81451437 81451626 + 2.25 NA Intergenic L1MB7|LINE|L1 -423663 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 244.75-22 chr6 61585099 61585273 + 2.25 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 11056 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 329.75-2 chr10 52470990 52471212 + 2.25 NA promoter-TSS (NR_120641) promoter-TSS (NR_120641) -568 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 486.25 chr8 116868110 116868606 + 2.25 NA intron (NM_006265, intron 1 of 13) L1MD1|LINE|L1 -6066 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 411.75-4 chr11 98535907 98536404 + 2.25 NA Intergenic Intergenic -484794 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 429.75 chr8 71130521 71130876 + 2.25 NA Intergenic Intergenic 226008 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 285-20 chr6 52714404 52714556 + 2.25 NA Intergenic Intergenic 30679 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 314-6 chr16 78894839 78895231 + 2.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 705702 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 236.5-5 chr10 52169966 52170116 + 2.25 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 144087 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 205.25-35 chr5 120981284 120981439 + 2.25 NA Intergenic Intergenic -341189 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 256.75-9 chr3 77274382 77274586 + 2.25 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 176472 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 278.75-11 chr5 96886572 96886862 + 2.25 NA exon (NM_001130140, exon 4 of 19) exon (NM_001130140, exon 4 of 19) 10778 NM_001329233 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 467.25-3 chr6 82130186 82130596 + 2.25 NA Intergenic Intergenic -28626 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 261.5-31 chr7 123233106 123233310 + 2.25 NA Intergenic Intergenic -33237 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 333-5 chr13 94453768 94453956 + 2.25 NA intron (NM_001129889, intron 6 of 9) THE1B|LTR|ERVL-MaLR 25820 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 177-42 chr4 30872862 30873012 + 2.25 NA intron (NM_032457, intron 1 of 2) MIR|SINE|MIR 152568 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 191.25-26 chr15 96423647 96423823 + 2.25 NA Intergenic (ATCAA)n|Simple_repeat|Simple_repeat 89970 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 491.25 chr22 27961846 27962216 + 2.25 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -41419 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 358.5-3 chr10 83266621 83266791 + 2.25 NA Intergenic L1MA5A|LINE|L1 410383 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 347.25-2 chr18 9593058 9593253 + 2.25 NA intron (NR_052003, intron 3 of 19) intron (NR_052003, intron 3 of 19) 21404 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 249-2 chr1 91893600 91893756 + 2.25 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) -7527 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 303.5-16 chr6 127446063 127446304 + 2.25 NA intron (NM_014702, intron 5 of 5) intron (NM_014702, intron 5 of 5) 13206 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 273-20 chr4 22281523 22281735 + 2.25 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 58037 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 273-15 chr2 80609329 80609549 + 2.25 NA intron (NM_001282599, intron 11 of 11) intron (NM_001282599, intron 11 of 11) 296060 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 424.25 chr12 121557692 121558014 + 2.25 NA intron (NM_001005366, intron 4 of 22) intron (NM_001005366, intron 4 of 22) 22393 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 399-2 chr8 105177837 105178332 + 2.25 NA Intergenic L2a|LINE|L2 -140354 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 412.5-5 chr6 34939688 34939970 + 2.25 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 50574 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 335 chr10 114795770 114796004 + 2.25 NA Intergenic Intergenic -25893 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 354.75-10 chr8 132860156 132860472 + 2.25 NA Intergenic L1MDa|LINE|L1 -6644 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 237.5-21 chr2 60147894 60148009 + 2.25 NA Intergenic Intergenic 235085 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 335.75-6 chr7 13883174 13883461 + 2.25 NA Intergenic Intergenic 103197 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 301.5-3 chr10 31178444 31178626 + 2.25 NA Intergenic Intergenic -9348 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 203.25-33 chr3 153471582 153471768 + 2.25 NA intron (NR_146713, intron 5 of 6) Tigger1|DNA|TcMar-Tigger -12820 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 222.25-17 chr2 194579374 194579520 + 2.25 NA Intergenic Intergenic -151148 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 177.25-36 chr4 105952302 105952428 + 2.25 NA intron (NM_001184692, intron 8 of 10) intron (NM_001184692, intron 8 of 10) 56894 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 201.5-18 chr14 81735107 81735208 + 2.25 NA intron (NR_146498, intron 2 of 2) Tigger16a|DNA|TcMar-Tigger 7981 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 357-5 chr2 193572584 193572802 + 2.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -771576 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 277.5-17 chr5 75672394 75672564 + 2.25 NA TTS (NM_001276713) TTS (NM_001276713) 39976 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 514.5 chr4 108188360 108188601 + 2.25 NA Intergenic Intergenic 16360 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 324.5-7 chr15 75992237 75992420 + 2.25 NA intron (NM_138573, intron 3 of 5) L1MEf|LINE|L1 20096 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 222.25-11 chr15 93574256 93574381 + 2.25 NA Intergenic L1MCa|LINE|L1 -282242 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 287-3 chr12 4933110 4933420 + 2.25 NA Intergenic Intergenic 23360 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 289.5-4 chr11 11366068 11366559 + 2.25 NA intron (NM_198516, intron 6 of 10) intron (NM_198516, intron 6 of 10) -13063 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 284.25-2 chr10 46086894 46087110 + 2.25 NA Intergenic L1M3|LINE|L1 -22493 NR_126580 653268 Hs.447454 NM_001077685 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudo 344.75-2 chr18 2748864 2749199 + 2.25 NA intron (NM_015295, intron 30 of 47) intron (NM_015295, intron 30 of 47) 93144 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 443 chr7 73732716 73733095 + 2.25 NA Intergenic Intergenic -2164 NR_026690 171022 Hs.650513 NR_026690 ABHD11-AS1 LINC00035|NCRNA00035|WBSCR26 ABHD11 antisense RNA 1 (tail to tail) ncRNA 321.5-11 chr7 53088193 53088361 + 2.25 NA Intergenic Intergenic 52644 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 222.75-37 chr5 156409653 156409828 + 2.25 NA intron (NM_001128209, intron 2 of 7) MIRb|SINE|MIR 82576 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 284.25-11 chr2 14425509 14425712 + 2.25 NA Intergenic LTR78B|LTR|ERV1 -24652 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 233.25-31 chr6 127435896 127436026 + 2.25 NA Intergenic Intergenic 23428 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 398.5-5 chr8 122349214 122349527 + 2.25 NA Intergenic Intergenic 219274 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 389.25-3 chr2 585133 585452 + 2.25 NA Intergenic Intergenic 27091 NR_136169 105373352 NR_136168 LOC105373352 - uncharacterized LOC105373352 ncRNA 295.25 chr1 48425977 48426220 + 2.25 NA intron (NM_019073, intron 3 of 12) L1M5|LINE|L1 46106 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 389.25-7 chr9 17498344 17498558 + 2.25 NA intron (NM_001365029, intron 25 of 25) intron (NM_001365029, intron 25 of 25) -80615 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 301-5 chr10 45639791 45640044 + 2.25 NA exon (NM_001282905, exon 7 of 11) exon (NM_001282905, exon 7 of 11) 32815 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 201.25-30 chr4 121750584 121750732 + 2.25 NA Intergenic Intergenic 13636 NM_001317839 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 336.25-6 chr3 168337722 168337911 + 2.25 NA intron (NR_021485, intron 3 of 15) (ACC)n|Simple_repeat|Simple_repeat 88294 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 362.5-10 chr9 29412326 29412725 + 2.25 NA Intergenic Intergenic -198924 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 348-8 chr3 77507210 77507427 + 2.25 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 409306 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 267.25-17 chr8 131633059 131633262 + 2.25 NA Intergenic Charlie2a|DNA|hAT-Charlie -270933 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 363-6 chr2 29307536 29307952 + 2.25 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -83844 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 552.5 chr2 2176739 2177052 + 2.25 NA intron (NM_015025, intron 2 of 24) intron (NM_015025, intron 2 of 24) -142337 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 324.75-6 chr18 22289762 22289932 + 2.25 NA Intergenic L1MB4|LINE|L1 120410 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 329-8 chr8 139564827 139565049 + 2.25 NA Intergenic LTR10B1|LTR|ERV1 138185 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 388.5-6 chr2 223993074 223993393 + 2.25 NA intron (NM_001136530, intron 3 of 8) intron (NM_001136530, intron 3 of 8) 35770 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 428.5-3 chr2 202262816 202263407 + 2.25 NA Intergenic Intergenic -2652 NM_015934 51602 Hs.471104 NM_015934 ENSG00000055044 NOP58 HSPC120|NOP5|NOP5/NOP58 NOP58 ribonucleoprotein protein-coding 243.75-17 chr3 31549358 31549514 + 2.25 NA intron (NM_178862, intron 1 of 15) intron (NM_178862, intron 1 of 15) 16511 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 364-7 chr4 35076752 35077054 + 2.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -807156 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 309.25-10 chr22 26248231 26248458 + 2.25 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 78870 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 296.75-11 chrX 140196379 140196542 + 2.25 NA Intergenic Intergenic 104793 NM_001271560 389895 Hs.127679 NM_001271560 LOC389895 - chromosome 16 open reading frame 72-like protein-coding 306.75-7 chr3 179092731 179092964 + 2.25 NA Intergenic L1MC4a|LINE|L1 -21038 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 415-4 chrX 80984103 80984370 + 2.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -174359 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 384.75-5 chr8 16373765 16373977 + 2.25 NA Intergenic Intergenic -181080 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 288.75-18 chr8 66684562 66684772 + 2.25 NA intron (NM_001204173, intron 2 of 18) intron (NM_001204173, intron 2 of 18) 17071 NM_001204173 100533105 NM_001204173 ENSG00000104205 C8orf44-SGK3 - C8orf44-SGK3 readthrough protein-coding 247.5-19 chr21 22646227 22646480 + 2.25 NA Intergenic Intergenic -432931 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 460.75-2 chr12 38250881 38251166 + 2.25 NA Intergenic Intergenic -65751 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 298.25-11 chr4 96606350 96606509 + 2.25 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 295726 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 297-3 chr1 163529015 163529152 + 2.25 NA Intergenic Intergenic -105892 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 373.75 chr2 124232082 124232380 + 2.25 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 206944 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 230.5-43 chr5 127055478 127055623 + 2.25 NA intron (NM_001164479, intron 3 of 4) intron (NM_001164479, intron 3 of 4) 17942 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 288-6 chr15 25749086 25749230 + 2.25 NA intron (NM_024490, intron 2 of 20) L1MEg|LINE|L1 99667 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 516 chr3 53302063 53302356 + 2.25 NA intron (NM_001290207, intron 4 of 7) L1MD2|LINE|L1 30918 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 332.5-4 chr11 39222035 39222264 + 2.25 NA Intergenic Intergenic 573291 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 447.5-2 chr16 26457871 26458361 + 2.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 432879 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 240.25-5 chr12 127543493 127543634 + 2.25 NA Intergenic L1MB7|LINE|L1 92904 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 242.25-8 chr14 97307554 97307662 + 2.25 NA Intergenic Intergenic -151208 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 243-21 chr4 93369378 93369625 + 2.25 NA intron (NM_001286838, intron 7 of 14) AluJr|SINE|Alu -459252 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 432.75-2 chr1 201825949 201826363 + 2.25 NA 3' UTR (NM_001167738, exon 27 of 27) 3' UTR (NM_001167738, exon 27 of 27) -3001 NM_018085 55705 Hs.596014 NM_018085 ENSG00000198700 IPO9 Imp9 importin 9 protein-coding 183-17 chr12 64573584 64573694 + 2.25 NA Intergenic MLT1F2|LTR|ERVL-MaLR -36856 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 318-30 chr9 31488541 31488804 + 2.25 NA Intergenic Intergenic -107182 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 437 chr1 86034391 86034728 + 2.25 NA intron (NM_152890, intron 12 of 59) MIR|SINE|MIR 121912 NR_146345 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 341.25-7 chr4 113320838 113321091 + 2.25 NA intron (NM_001354275, intron 27 of 43) L2c|LINE|L2 28125 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 349.25-2 chr11 63082977 63083163 + 2.25 NA intron (NM_001136506, intron 7 of 9) intron (NM_001136506, intron 7 of 9) 61151 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 385.5-3 chr6 147228560 147228856 + 2.25 NA intron (NM_139244, intron 2 of 25) intron (NM_139244, intron 2 of 25) -24094 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 229-10 chr11 115517083 115517254 + 2.25 NA Intergenic Intergenic -12753 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 371-2 chr18 53092501 53092723 + 2.25 NA intron (NM_005215, intron 7 of 28) intron (NM_005215, intron 7 of 28) -144489 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 187.5-9 chr10 86518116 86518349 + 2.25 NA intron (NM_001318328, intron 1 of 18) intron (NM_001318328, intron 1 of 18) 3552 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 213-31 chr3 54024769 54024934 + 2.25 NA Intergenic Intergenic -97701 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 357.5-9 chr20 31757213 31757504 + 2.25 NA intron (NM_012112, intron 2 of 17) intron (NM_012112, intron 2 of 17) 18068 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 196.75-12 chr15 50119902 50120031 + 2.25 NA promoter-TSS (NM_024837) promoter-TSS (NM_024837) -733 NR_073597 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 395-3 chr8 77782222 77782468 + 2.25 NA Intergenic Intergenic 331648 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 285.25-5 chr10 102560557 102560728 + 2.25 NA intron (NM_001178133, intron 3 of 10) L1ME4a|LINE|L1 56670 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 288.5-18 chr8 55357063 55357252 + 2.25 NA intron (NM_052898, intron 1 of 2) L1MC5|LINE|L1 98164 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 276.5-15 chr5 36281041 36281293 + 2.25 NA intron (NM_001323279, intron 1 of 12) MIRb|SINE|MIR 20735 NM_001323273 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 331-16 chr8 118355553 118355714 + 2.25 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -243814 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 347.25-3 chr2 105401114 105401344 + 2.25 NA intron (NM_201557, intron 1 of 5) L1MC5|LINE|L1 -1562 NM_001318894 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 282.75-3 chr10 49587086 49587368 + 2.25 NA Intergenic L1MB5|LINE|L1 -21868 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 196-8 chr10 100403017 100403170 + 2.25 NA Intergenic Intergenic 29517 NR_026762 90271 Hs.628088 NR_026762 ENSG00000235823 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 262.5-30 chr5 20346283 20346434 + 2.25 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 40807 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 318-14 chr4 13593209 13593406 + 2.25 NA intron (NM_148894, intron 12 of 25) intron (NM_148894, intron 12 of 25) 34418 NM_148894 259282 Hs.744935 NM_148894 ENSG00000038219 BOD1L1 BOD1L|FAM44A biorientation of chromosomes in cell division 1 like 1 protein-coding 296.75-6 chr3 4234408 4234614 + 2.25 NA Intergenic Intergenic -68793 NM_001276325 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 264-20 chr3 103788608 103788819 + 2.25 NA Intergenic Intergenic -264597 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 389.5-2 chr12 128586383 128586724 + 2.25 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 237405 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 539.25 chr8 134041178 134041543 + 2.25 NA Intergenic Intergenic 154864 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 243-14 chr2 228915686 228915834 + 2.25 NA Intergenic ERVL-E-int|LTR|ERVL -304365 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 364.25-5 chr5 40764079 40764355 + 2.25 NA intron (NM_006251, intron 8 of 8) intron (NM_006251, intron 8 of 8) -8256 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 267.75 chr1 73186187 73186331 + 2.25 NA Intergenic Intergenic -119911 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 363-5 chr13 67585454 67585698 + 2.25 NA Intergenic L1MA4A|LINE|L1 213189 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 383.5-6 chr16 76050954 76051194 + 2.25 NA Intergenic L1MA3|LINE|L1 -226327 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 300-19 chr6 50965007 50965256 + 2.25 NA Intergenic L1MC1|LINE|L1 146260 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 279-20 chr6 158454856 158455062 + 2.25 NA intron (NM_020245, intron 5 of 13) intron (NM_020245, intron 5 of 13) -81477 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 297-2 chr1 157188631 157188827 + 2.25 NA Intergenic MIR|SINE|MIR -50138 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 167.25-7 chr1 167423294 167423386 + 2.25 NA non-coding (NR_037163, exon 17 of 17) non-coding (NR_037163, exon 17 of 17) 94270 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 354-4 chr17 64384836 64385187 + 2.25 NA intron (NM_000442, intron 2 of 15) intron (NM_000442, intron 2 of 15) 5849 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 193.25-22 chr22 25443866 25443984 + 2.25 NA Intergenic L1MC2|LINE|L1 -4162 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 320.25-13 chr7 25402777 25402984 + 2.25 NA Intergenic MIR|SINE|MIR -174394 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 293-14 chr21 18654886 18655083 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 31180 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 345-9 chr2 191612357 191612602 + 2 NA Intergenic Intergenic -65593 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 418.5-5 chr2 117247619 117247892 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -566936 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 180-69 chr9 3958995 3959183 + 2 NA intron (NM_001042413, intron 4 of 10) MLT1A0|LTR|ERVL-MaLR 60443 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 318.25-8 chr9 15623981 15624254 + 2 NA intron (NM_001355547, intron 6 of 24) intron (NM_001355547, intron 6 of 24) 60139 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 297-4 chr1 179881617 179881881 + 2 NA promoter-TSS (NM_015602) promoter-TSS (NM_015602) -293 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 281-20 chr5 173949589 173949846 + 2 NA intron (NM_001308192, intron 5 of 8) intron (NM_001308192, intron 5 of 8) -39453 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 226.5-31 chr2 223338783 223338959 + 2 NA Intergenic Intergenic 263490 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 215-43 chr8 106376911 106377065 + 2 NA intron (NM_018002, intron 2 of 15) L3|LINE|CR1 -70936 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 240.75-7 chr11 84388337 84388530 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -71094 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 411.75-2 chr1 165939024 165939440 + 2 NA Intergenic AluY|SINE|Alu 31311 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 253.25-34 chr8 92058627 92058803 + 2 NA intron (NM_001198633, intron 1 of 10) Tigger14a|DNA|TcMar-Tigger 3919 NM_004349 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 298-16 chr3 98048162 98048421 + 2 NA Intergenic Intergenic -12987 NR_047685 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 180-6 chr1 78885289 78885409 + 2 NA Intergenic Intergenic 121381 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 223.5-5 chr1 43171190 43171369 + 2 NA TTS (NR_106791) TTS (NR_106791) 433 NR_106791 102465439 NR_106791 ENSG00000284410 MIR6733 hsa-mir-6733 microRNA 6733 ncRNA 184-26 chr2 176496068 176496305 + 2 NA Intergenic Intergenic 104866 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 287.5-27 chr7 3230497 3230739 + 2 NA Intergenic L1MDa|LINE|L1 -70634 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 284-15 chr4 37824743 37824929 + 2 NA Intergenic Intergenic -1850 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 315-6 chr17 77536336 77536713 + 2 NA TTS (NR_148967) TTS (NR_148967) 9523 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 189.75-21 chr2 116999701 116999833 + 2 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -814924 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 303-2 chr10 80825099 80825281 + 2 NA Intergenic L1MEg|LINE|L1 175393 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 231-14 chr15 62514734 62514890 + 2 NA Intergenic Intergenic 130369 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 227-31 chr7 103568268 103568458 + 2 NA intron (NM_005045, intron 31 of 64) intron (NM_005045, intron 31 of 64) -122156 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 357.5-5 chr2 114971781 114971986 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -92690 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 423.75 chr10 59910684 59911077 + 2 NA Intergenic AluSq|SINE|Alu -4324 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 342.25-5 chr5 29997122 29997391 + 2 NA Intergenic Intergenic 116696 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 219.75-13 chr17 49345921 49346034 + 2 NA intron (NR_135579, intron 1 of 7) intron (NR_135579, intron 1 of 7) -15188 NR_110884 102724596 Hs.559253 NR_110882 ENSG00000248714 LOC102724596 - uncharacterized LOC102724596 ncRNA 485.25-2 chr6 140455383 140455841 + 2 NA Intergenic L1MD1|LINE|L1 -228202 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 375.75-5 chr14 26568025 26568350 + 2 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) -14757 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 331.25-10 chr7 28384588 28384862 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -27793 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 190-34 chr3 41953055 41953218 + 2 NA intron (NR_136342, intron 2 of 34) L1MB3|LINE|L1 8967 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 267.25-15 chr7 100726653 100726861 + 2 NA Intergenic AluSx|SINE|Alu 6289 NM_000799 2056 Hs.2303 NM_000799 ENSG00000130427 EPO DBAL|ECYT5|EP|MVCD2 erythropoietin protein-coding 197-4 chr10 57947772 57947897 + 2 NA Intergenic L1ME2z|LINE|L1 320060 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 381-7 chr4 70811601 70811884 + 2 NA Intergenic L1MC3|LINE|L1 27761 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 373.25 chr11 124061282 124061562 + 2 NA Intergenic L1MB8|LINE|L1 -22421 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 246.5-12 chr3 54359063 54359247 + 2 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 236603 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 199.25-42 chr9 110404132 110404334 + 2 NA intron (NM_153366, intron 39 of 47) intron (NM_153366, intron 39 of 47) -66349 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 282-19 chr4 32918956 32919206 + 2 NA Intergenic Intergenic 568043 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 244-13 chr22 26785914 26786228 + 2 NA Intergenic MIRb|SINE|MIR -74140 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 328.5-19 chr7 80440120 80440368 + 2 NA Intergenic Intergenic -65805 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 250 chr1 99999121 99999265 + 2 NA intron (NM_001271684, intron 2 of 5) MIR3|SINE|MIR 28676 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 271-14 chr2 119770929 119771190 + 2 NA intron (NM_002830, intron 1 of 26) intron (NM_002830, intron 1 of 26) 11137 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 307-15 chr5 179700077 179700243 + 2 NA intron (NM_001363993, intron 2 of 15) intron (NM_001363993, intron 2 of 15) 1193 NM_001746 821 Hs.567968 NM_001746 ENSG00000127022 CANX CNX|IP90|P90 calnexin protein-coding 196-45 chr9 130419223 130419373 + 2 NA intron (NM_001291815, intron 86 of 97) intron (NM_001291815, intron 86 of 97) -25409 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 422.5-2 chr3 82260486 82261096 + 2 NA intron (NR_147146, intron 3 of 8) L1ME4c|LINE|L1 274649 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 326-18 chr9 80945792 80946036 + 2 NA Intergenic Intergenic 743621 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 342 chr1 181750947 181751206 + 2 NA intron (NM_001205293, intron 26 of 47) intron (NM_001205293, intron 26 of 47) 267559 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 253.5 chr1 31097160 31097378 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -31552 NM_014676 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 204-6 chr10 9934942 9935110 + 2 NA Intergenic Intergenic -123696 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 245-32 chr6 126467543 126467729 + 2 NA intron (NR_104462, intron 3 of 3) L1MC3|LINE|L1 -16995 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 603.75 chr12 27198266 27198789 + 2 NA Intergenic Intergenic -45759 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 290-7 chr18 51396806 51396977 + 2 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 4849 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 254.5-27 chr6 7829764 7829947 + 2 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 80222 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 230-18 chr3 87998128 87998356 + 2 NA Intergenic Intergenic 15666 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 307.75-2 chr14 39172917 39173286 + 2 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat -2153 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 304.5-16 chr5 145074726 145074975 + 2 NA Intergenic L2a|LINE|L2 760492 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 248.5-19 chr3 60700894 60701026 + 2 NA intron (NR_148921, intron 4 of 4) L1P1|LINE|L1 -83090 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 401.25-5 chr2 229829034 229829449 + 2 NA exon (NM_001284215, exon 7 of 41) exon (NM_001284215, exon 7 of 41) 92438 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 335.75 chr12 98365368 98365557 + 2 NA Intergenic L2c|LINE|L2 91683 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 187.5-77 chr7 47717055 47717254 + 2 NA Intergenic L1MB7|LINE|L1 -44322 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 242.25-21 chr4 39761484 39761656 + 2 NA intron (NM_005339, intron 4 of 6) intron (NM_005339, intron 4 of 6) 63434 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 205.5-19 chr16 35813563 35813741 + 2 NA Intergenic L1MA8|LINE|L1 67100 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 274-20 chr20 60675057 60675313 + 2 NA Intergenic Intergenic 110623 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 206.25-10 chr11 107283272 107283377 + 2 NA Intergenic L1MC4|LINE|L1 174522 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 162.25-37 chr5 90521082 90521194 + 2 NA intron (NM_198273, intron 2 of 2) MIR|SINE|MIR 8446 NM_001286812 116068 Hs.136235 NM_198273 ENSG00000176018 LYSMD3 - LysM domain containing 3 protein-coding 276.5-2 chr10 39304594 39304820 + 2 NA Intergenic ALR/Alpha|Satellite|centr 608111 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 482.5-3 chr4 31958389 31958787 + 2 NA Intergenic Intergenic -38791 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 177.5-50 chr4 39156134 39156317 + 2 NA Intergenic L1MB8|LINE|L1 -26304 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 308.5-15 chr8 19079296 19079528 + 2 NA Intergenic Intergenic -65709 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 215.5-24 chr2 30527661 30527892 + 2 NA intron (NM_182551, intron 3 of 6) MIR|SINE|MIR 80530 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 240.25-27 chr8 115071116 115071337 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 596787 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 193-44 chr5 124124625 124124768 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 313824 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 218-13 chr14 44569571 44569794 + 2 NA Intergenic L1PB1|LINE|L1 62273 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 436.75-3 chr9 135933193 135933475 + 2 NA 3' UTR (NM_016172, exon 10 of 10) 3' UTR (NM_016172, exon 10 of 10) -25788 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 265.75-6 chr19 39233861 39234077 + 2 NA Intergenic AluJb|SINE|Alu 11037 NM_172139 282617 Hs.406744 NM_172139 ENSG00000197110 IFNL3 IFN-lambda-3|IFN-lambda-4|IL-28B|IL-28C|IL28B|IL28C interferon lambda 3 protein-coding 213-45 chr7 130910226 130910400 + 2 NA intron (NR_110472, intron 2 of 3) intron (NR_110472, intron 2 of 3) 2997 NR_034120 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 261-43 chr7 48983360 48983535 + 2 NA Intergenic L1MEc|LINE|L1 58900 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 314.5-2 chr13 80015678 80015945 + 2 NA intron (NR_104138, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 4734 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 273-16 chr2 107341607 107341812 + 2 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 7816 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 124-31 chr2 208131022 208131144 + 2 NA intron (NR_038437, intron 1 of 2) MER90|LTR|ERV1 -1255 NM_020989 1420 Hs.72910 NM_020989 ENSG00000163254 CRYGC CCL|CRYG3|CTRCT2 crystallin gamma C protein-coding 405.25-2 chr15 33522852 33523151 + 2 NA intron (NM_001243996, intron 3 of 102) intron (NM_001243996, intron 3 of 102) 212034 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 312.5-14 chr8 78504282 78504525 + 2 NA Intergenic L1MC4a|LINE|L1 -11937 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 358-7 chr5 30227510 30227745 + 2 NA Intergenic MIR|SINE|MIR 347067 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 177-16 chr16 68436416 68436539 + 2 NA intron (NM_018667, intron 1 of 8) L2c|LINE|L2 12031 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 489.5 chr2 79465744 79466068 + 2 NA Intergenic L1PA5|LINE|L1 34938 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 382.5-6 chr22 34699629 34699983 + 2 NA Intergenic MIRb|SINE|MIR 298110 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 127.75-46 chr2 60020988 60021104 + 2 NA Intergenic Intergenic 361990 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 237.75-2 chr1 75198275 75198422 + 2 NA Intergenic Intergenic 63960 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 202-31 chr9 11598280 11598443 + 2 NA Intergenic Intergenic 985155 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 265-10 chr16 88893850 88894042 + 2 NA intron (NM_175931, intron 2 of 10) intron (NM_175931, intron 2 of 10) 10431 NR_135194 101927793 Hs.690953 NR_135194 ENSG00000259881 LOC101927793 - uncharacterized LOC101927793 ncRNA 367-2 chr2 128881009 128881366 + 2 NA Intergenic L1MEj|LINE|L1 16587 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 274.5-31 chr6 134265563 134265798 + 2 NA intron (NM_001143676, intron 1 of 13) intron (NM_001143676, intron 1 of 13) 52378 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 468-2 chr7 85596297 85596571 + 2 NA Intergenic Intergenic 175312 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 239.75-21 chr20 50512858 50513010 + 2 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 2551 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 275-13 chr4 18282362 18282521 + 2 NA Intergenic Intergenic -260566 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 350-5 chr5 42807693 42807901 + 2 NA intron (NM_001085486, intron 3 of 5) intron (NM_001085486, intron 3 of 5) 4095 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 418.5 chr10 73421526 73421768 + 2 NA Intergenic AluJb|SINE|Alu -7589 NM_001320880 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 312-2 chr10 7478113 7478362 + 2 NA Intergenic Intergenic -66751 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 482.5-2 chr15 101328203 101328880 + 2 NA intron (NM_138319, intron 14 of 20) intron (NM_138319, intron 14 of 20) -5896 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 334-11 chr8 76459457 76459769 + 2 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 52959 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 191-42 chr5 2468428 2468540 + 2 NA Intergenic Intergenic -156283 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 171.75-8 chr10 74823608 74823696 + 2 NA Intergenic Intergenic -1603 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 360.5 chr1 41516965 41517264 + 2 NA intron (NM_024503, intron 7 of 8) intron (NM_024503, intron 7 of 8) -32431 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 203.75-4 chr12 130229483 130229667 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 67116 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 287-15 chr5 124539482 124539676 + 2 NA Intergenic Intergenic -101059 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 357.5-2 chr12 10730629 10730980 + 2 NA Intergenic Intergenic -7481 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 220.5-14 chr12 108117705 108117847 + 2 NA Intergenic LTR45B|LTR|ERV1 -11512 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 416.75-3 chr3 101813927 101814293 + 2 NA intron (NM_001348997, intron 6 of 6) intron (NM_001348997, intron 6 of 6) -13880 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 180.5-92 chr8 133591480 133591668 + 2 NA Intergenic MIR|SINE|MIR -19687 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 388-5 chr3 6285997 6286284 + 2 NA Intergenic L1PA16|LINE|L1 519309 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 401.5 chr11 100581142 100581443 + 2 NA Intergenic Intergenic -105996 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 427.5 chr1 118982534 118982903 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 5625 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 141-16 chr12 13424926 13425021 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -48228 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 232-33 chrX 122672022 122672141 + 2 NA Intergenic Intergenic -512162 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 365 chr1 77180054 77180292 + 2 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 39257 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 257-21 chr8 115670444 115670638 + 2 NA Intergenic Intergenic -1566 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 311-6 chr16 48306484 48306693 + 2 NA intron (NM_031490, intron 11 of 14) intron (NM_031490, intron 11 of 14) -59049 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 231-3 chr1 153208697 153208874 + 2 NA Intergenic Intergenic 5355 NM_001010857 149018 Hs.125785 NM_001010857 ENSG00000203784 LELP1 - late cornified envelope like proline rich 1 protein-coding 289-5 chr11 94326290 94326608 + 2 NA Intergenic Intergenic 20812 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 413.5-3 chr9 88171902 88172268 + 2 NA Intergenic L1MC5|LINE|L1 -33604 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 218.25-6 chr10 20436111 20436375 + 2 NA Intergenic Intergenic -115727 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 315-7 chr18 4291375 4291548 + 2 NA intron (NR_036489, intron 2 of 2) intron (NR_036489, intron 2 of 2) 26859 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 221.75-20 chr4 63261136 63261254 + 2 NA Intergenic Intergenic -1099430 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 274.5-6 chr12 12981544 12981883 + 2 NA intron (NR_038920, intron 2 of 2) L2a|LINE|L2 1876 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 317 chr11 40291218 40291459 + 2 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 1792 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 225.5-49 chr8 56644552 56644751 + 2 NA Intergenic Intergenic -84828 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 307.5-2 chr10 98648451 98648715 + 2 NA intron (NM_021828, intron 6 of 11) AluJr4|SINE|Alu -201620 NM_001322491 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 329.25-5 chr4 19295129 19295443 + 2 NA Intergenic Intergenic -956619 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 291.5-5 chr2 16400921 16401309 + 2 NA Intergenic MIR|SINE|MIR 264719 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 220-26 chr5 40006796 40007018 + 2 NA Intergenic L1M3c|LINE|L1 -45384 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 266.25-22 chr7 108472748 108472992 + 2 NA intron (NM_001256010, intron 9 of 9) intron (NM_001256010, intron 9 of 9) -16150 NM_001371122 427 chr18 47183620 47183903 + 2 NA Intergenic MIR3|SINE|MIR -7397 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 363-11 chr9 29773809 29774065 + 2 NA Intergenic Intergenic -560336 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168-32 chr16 66096914 66097041 + 2 NA Intergenic AluJr|SINE|Alu -269714 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 475.25-2 chr6 44450287 44450759 + 2 NA TTS (NM_001253) TTS (NM_001253) 14882 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 276.5-4 chr18 34389955 34390203 + 2 NA Intergenic Intergenic -103211 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 320-8 chr19 34458778 34458973 + 2 NA exon (NM_005499, exon 13 of 17) exon (NM_005499, exon 13 of 17) -22883 NM_001080436 126374 Hs.585010 NM_001080436 ENSG00000142279 WTIP - WT1 interacting protein protein-coding 264.75-16 chr3 25372057 25372308 + 2 NA intron (NM_001290300, intron 1 of 7) L2a|LINE|L2 12745 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 349-13 chr8 139565349 139565726 + 2 NA Intergenic MLT2B4|LTR|ERVL 137586 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 269-18 chr8 50027055 50027229 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 115735 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 261.75-27 chr7 134143704 134144002 + 2 NA intron (NM_001365700, intron 4 of 15) MER5A1|DNA|hAT-Charlie 16513 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 148-32 chr18 62157225 62157339 + 2 NA intron (NM_176787, intron 5 of 30) intron (NM_176787, intron 5 of 30) 29774 NM_012327 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 383.25-5 chr4 69467745 69468168 + 2 NA Intergenic LTR9B|LTR|ERV1 27949 NM_021139 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 134.75-47 chr3 34306813 34306891 + 2 NA Intergenic L2a|LINE|L2 508222 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 264.5-8 chr13 80591830 80592070 + 2 NA Intergenic Intergenic -250824 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 371.5-8 chr5 82588730 82589124 + 2 NA Intergenic Intergenic -251228 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 274.25-5 chr15 37821330 37821557 + 2 NA Intergenic Intergenic -113164 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 242.25-10 chr15 90798188 90798380 + 2 NA exon (NM_001287248, exon 17 of 22) exon (NM_001287248, exon 17 of 22) -70304 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 296-7 chr14 48839442 48839862 + 2 NA Intergenic Intergenic 746728 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 284.5-5 chr10 77504539 77504923 + 2 NA intron (NM_001271519, intron 1 of 28) AluJo|SINE|Alu 133077 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 225.25-37 chrX 57877288 57877400 + 2 NA Intergenic HERVK22-int|LTR|ERVK 33289 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 361-2 chr11 104029366 104029593 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -7161 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 502.25 chr10 31599645 31599967 + 2 NA Intergenic Intergenic -200051 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 299.5-12 chr7 48541125 48541507 + 2 NA intron (NM_152701, intron 55 of 61) MER102c|DNA|hAT-Charlie 369858 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 255-26 chr8 83165319 83165453 + 2 NA Intergenic Intergenic -238372 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 418-3 chr21 15458326 15458759 + 2 NA Intergenic Intergenic -271392 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 268.5-31 chr7 84633535 84633714 + 2 NA Intergenic L1MA4A|LINE|L1 101148 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 354-11 chr9 111198231 111198490 + 2 NA Intergenic L1PA3|LINE|L1 72854 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 210.5-44 chr4 30603704 30603819 + 2 NA Intergenic Intergenic -116608 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 217.25-11 chr14 58260579 58260745 + 2 NA intron (NM_152132, intron 5 of 10) intron (NM_152132, intron 5 of 10) 15819 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 183.25-20 chr17 82678070 82678225 + 2 NA intron (NM_006822, intron 1 of 5) intron (NM_006822, intron 1 of 5) -9840 NR_039751 100616196 NR_039751 ENSG00000266107 MIR4525 - microRNA 4525 ncRNA 196.5-24 chr12 125884519 125884659 + 2 NA Intergenic Intergenic 98785 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 223.5-6 chr1 118245939 118246126 + 2 NA Intergenic Intergenic -60804 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 236-37 chr8 77409287 77409480 + 2 NA Intergenic Intergenic -41314 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 267.75-9 chr3 8786301 8786719 + 2 NA Intergenic L1MB7|LINE|L1 -16896 NM_001354654 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 225-28 chr5 22047138 22047299 + 2 NA intron (NM_004061, intron 5 of 14) intron (NM_004061, intron 5 of 14) -95134 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 308.5-6 chr17 58427719 58428071 + 2 NA intron (NM_001080439, intron 5 of 5) MER58B|DNA|hAT-Charlie -10313 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 347-6 chr5 18756056 18756408 + 2 NA Intergenic Intergenic 948958 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 259-8 chr12 9176770 9176960 + 2 NA intron (NM_002864, intron 15 of 35) MLT1F-int|LTR|ERVL-MaLR 31530 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 146.5-79 chr6 104584334 104584474 + 2 NA Intergenic L1MEi|LINE|L1 275142 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 400.5-6 chr8 65807044 65807466 + 2 NA intron (NM_001242318, intron 1 of 12) L1M4|LINE|L1 -18198 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 377.5-2 chr14 72950331 72950647 + 2 NA intron (NM_001352448, intron 8 of 13) L2|LINE|L2 24025 NM_181340 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 149.5-110 chr8 130711288 130711415 + 2 NA Intergenic L2a|LINE|L2 -267677 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 229.5-20 chr15 94207680 94207848 + 2 NA Intergenic Intergenic -90437 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 240.25-24 chr6 56435966 56436194 + 2 NA Intergenic Intergenic -41952 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 237.5-22 chr2 135605386 135605599 + 2 NA intron (NM_001282799, intron 3 of 22) intron (NM_001282799, intron 3 of 22) 19140 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 355-3 chr11 114026576 114026928 + 2 NA Intergenic Intergenic -32959 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 178.75-42 chr3 163427764 163427912 + 2 NA Intergenic L1M1|LINE|L1 -124537 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 158.5-60 chr2 150221079 150221233 + 2 NA Intergenic L1ME3B|LINE|L1 35851 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 213.75-43 chr6 156082736 156083033 + 2 NA Intergenic MIRb|SINE|MIR 136087 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 235.5 chr1 10300802 10300967 + 2 NA intron (NM_001365951, intron 22 of 48) intron (NM_001365951, intron 22 of 48) 1918 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 191.5-15 chr11 114449816 114450026 + 2 NA exon (NM_015523, exon 7 of 7) exon (NM_015523, exon 7 of 7) 10454 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 372-7 chr7 36552289 36552529 + 2 NA intron (NM_001177507, intron 12 of 19) L1PA10|LINE|L1 47711 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 273.5-21 chr8 121751939 121752207 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -110633 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 354-2 chr11 14607738 14608065 + 2 NA intron (NM_148976, intron 2 of 10) LTR16B|LTR|ERVL 35733 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 182-41 chr8 127268098 127268274 + 2 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 23549 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 211.25-27 chr3 134263871 134264030 + 2 NA Intergenic L1MEd|LINE|L1 -13206 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 263-4 chr10 73610608 73610859 + 2 NA intron (NM_001350995, intron 1 of 21) intron (NM_001350995, intron 1 of 21) 15248 NM_001350995 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 255-7 chr14 40619580 40619723 + 2 NA Intergenic Intergenic -335060 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 373.5-2 chr14 22953042 22953417 + 2 NA intron (NM_017815, intron 2 of 9) AluJb|SINE|Alu 3800 NR_039856 100616424 NR_039856 ENSG00000284118 MIR4707 mir-4707 microRNA 4707 ncRNA 222.5-51 chrX 26489208 26489446 + 2 NA Intergenic Intergenic -69010 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 452.25-4 chr5 91232083 91232364 + 2 NA Intergenic Intergenic 82179 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 338 chr10 78661081 78661298 + 2 NA Intergenic Intergenic 393847 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 229.5-37 chr4 88826486 88826689 + 2 NA intron (NM_014883, intron 7 of 23) L2c|LINE|L2 -3226 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 396.25-4 chr5 42857400 42857720 + 2 NA Intergenic Intergenic -45484 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 325-8 chr4 100040344 100040556 + 2 NA Intergenic L1ME3|LINE|L1 89956 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 293.75-12 chr4 95457943 95458284 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 90860 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 178.25-11 chr10 38527049 38527239 + 2 NA Intergenic Intergenic 98998 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 449.5-3 chr3 54763023 54763506 + 2 NA intron (NM_018398, intron 12 of 37) MIRb|SINE|MIR -123407 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 351-4 chr20 54609536 54609785 + 2 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 134067 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 218.5-6 chr10 56880906 56881264 + 2 NA Intergenic MER50|LTR|ERV1 423474 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 369 chr1 100540727 100541020 + 2 NA 3' UTR (NM_022049, exon 2 of 2) 3' UTR (NM_022049, exon 2 of 2) 2734 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 520.25 chr18 7913421 7914139 + 2 NA intron (NM_002845, intron 4 of 30) intron (NM_002845, intron 4 of 30) 346464 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 291.5-2 chr11 17321957 17322401 + 2 NA intron (NM_001352669, intron 12 of 14) L1MA2|LINE|L1 -29621 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 370.5-2 chr12 21390867 21391061 + 2 NA intron (NM_134431, intron 1 of 15) intron (NM_134431, intron 1 of 15) 4473 NM_134431 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 150.5-6 chr10 23729579 23729666 + 2 NA intron (NM_001098500, intron 1 of 18) L1MC1|LINE|L1 34895 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 320.75-5 chr5 125933749 125934048 + 2 NA Intergenic L1MEf|LINE|L1 -245679 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 224.5-5 chr1 118075971 118076248 + 2 NA intron (NM_206996, intron 15 of 48) intron (NM_206996, intron 15 of 48) 109119 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 263-10 chr16 53420357 53420601 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -13992 NM_005611 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 247.5-48 chr8 135805302 135805477 + 2 NA Intergenic Intergenic 347933 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 255-19 chr5 23692422 23692562 + 2 NA Intergenic Intergenic 184837 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 244.75-16 chr4 101488073 101488261 + 2 NA Intergenic L1MC1|LINE|L1 140390 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 188-46 chr8 124737768 124737916 + 2 NA Intergenic Intergenic -9335 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 181 chr1 22480772 22480879 + 2 NA intron (NM_001083621, intron 2 of 18) L1ME2|LINE|L1 28974 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 473-3 chr8 67416896 67417227 + 2 NA intron (NR_136224, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 73227 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 303.5-20 chr8 104450992 104451162 + 2 NA intron (NM_001385, intron 2 of 9) L1ME4b|LINE|L1 15978 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 127.25-85 chr6 124560495 124560614 + 2 NA intron (NM_001300738, intron 4 of 7) MIR|SINE|MIR 277549 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 281.75-16 chr6 16299394 16299638 + 2 NA 3' UTR (NM_001128164, exon 8 of 8) 3' UTR (NM_001128164, exon 8 of 8) 60929 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 220-23 chr3 196842153 196842363 + 2 NA Intergenic Intergenic -25598 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 184-20 chr16 83591375 83591490 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 83086 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 234-11 chr11 9270226 9270352 + 2 NA Intergenic MIR|SINE|MIR -4939 NM_015213 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 288-8 chr15 97685115 97685291 + 2 NA Intergenic Intergenic -124505 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 261.5-21 chr4 103207178 103207397 + 2 NA Intergenic Intergenic -8944 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 163-13 chr16 7788274 7788428 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 455506 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 301.75-13 chr8 61311541 61311707 + 2 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 23654 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 366-4 chr12 120921786 120922037 + 2 NA Intergenic MIRb|SINE|MIR 17216 NR_131215 105500240 Hs.742757 NR_131215 XLOC_009911 - uncharacterized LOC105500240 ncRNA 323-9 chr15 51374187 51374398 + 2 NA intron (NM_181789, intron 1 of 9) intron (NM_181789, intron 1 of 9) -2954 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 310-24 chr8 87056875 87057109 + 2 NA intron (NM_173538, intron 4 of 10) MLT1E1A|LTR|ERVL-MaLR 190577 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 370.5-3 chr13 51313707 51314030 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -27164 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 305-7 chr13 69405650 69405936 + 2 NA Intergenic AluSz|SINE|Alu 183447 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 183.25-27 chr3 40228964 40229110 + 2 NA intron (NM_001284424, intron 11 of 15) intron (NM_001284424, intron 11 of 15) 80661 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 194-31 chr5 65728467 65728598 + 2 NA intron (NM_020726, intron 1 of 12) L1M5|LINE|L1 6327 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 246.75-20 chr3 116285058 116285190 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -74900 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 186.5-54 chr7 121175932 121176110 + 2 NA intron (NM_001105533, intron 15 of 17) intron (NM_001105533, intron 15 of 17) -149346 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 168-71 chrX 47056204 47056330 + 2 NA intron (NM_001077445, intron 10 of 10) intron (NM_001077445, intron 10 of 10) -22088 NM_001282849 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 205-18 chr14 64809870 64810031 + 2 NA intron (NM_001024858, intron 1 of 34) L1ME4b|LINE|L1 13430 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 322.5-13 chr22 49042508 49042795 + 2 NA Intergenic Intergenic 175881 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 360-6 chr3 100416096 100416390 + 2 NA intron (NM_001085451, intron 1 of 3) L1MC5|LINE|L1 14704 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 369-5 chr16 35673690 35674021 + 2 NA Intergenic ALR/Alpha|Satellite|centr -72697 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 304.25-4 chr11 103087398 103087683 + 2 NA intron (NM_001318740, intron 2 of 6) AluJb|SINE|Alu 4620 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 360-9 chr9 28686838 28687091 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 32341 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 401.75-2 chr5 28615094 28615490 + 2 NA Intergenic Intergenic -311578 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 345.5-9 chr7 39525854 39526114 + 2 NA Intergenic L1MB7|LINE|L1 -40420 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 572.5 chr5 39732150 39732707 + 2 NA Intergenic Intergenic 211997 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 429-6 chr20 36501886 36502158 + 2 NA intron (NM_001042486, intron 4 of 6) HAL1|LINE|L1 -39497 NM_006097 10398 Hs.504687 NM_006097 ENSG00000101335 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin light chain 9 protein-coding 338-3 chr16 81943828 81944125 + 2 NA intron (NM_002661, intron 30 of 32) L1M7|LINE|L1 67494 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 327-12 chr5 105176536 105176779 + 2 NA Intergenic Intergenic 77183 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 209-23 chr4 71512551 71512707 + 2 NA intron (NM_003759, intron 13 of 22) L1MA4A|LINE|L1 173576 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 308-12 chr8 93785324 93785590 + 2 NA intron (NR_024522, intron 12 of 28) intron (NR_024522, intron 12 of 28) 30563 NR_024522 91147 Hs.116240 NM_153704 ENSG00000164953 TMEM67 JBTS6|MECKELIN|MKS3|NPHP11|TNEM67 transmembrane protein 67 protein-coding 254.25-28 chr9 24966798 24966926 + 2 NA Intergenic L1PB2|LINE|L1 -420965 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 134.5-42 chr2 5322878 5322997 + 2 NA Intergenic Intergenic 368181 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 226.75-2 chr1 92449526 92449645 + 2 NA Intergenic L1ME1|LINE|L1 34369 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 275.75-17 chr4 138618376 138618589 + 2 NA Intergenic Intergenic 308771 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 157.5-78 chr4 103680387 103680470 + 2 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 39557 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 323.75-3 chr12 25252435 25252744 + 2 NA Intergenic L2a|LINE|L2 -1660 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 162.25-13 chr15 58149220 58149311 + 2 NA intron (NM_020980, intron 1 of 5) MIRc|SINE|MIR 10884 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 344 chr1 112268921 112269302 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -127103 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 284.5-12 chr14 61026494 61026782 + 2 NA intron (NR_033344, intron 5 of 16) intron (NR_033344, intron 5 of 16) -44948 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 279-24 chr8 119330138 119330308 + 2 NA Intergenic Intergenic 5052 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 260.5-25 chr4 94245796 94245998 + 2 NA intron (NM_001128429, intron 6 of 23) ERVL-E-int|LTR|ERVL -7412 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 199.25-6 chr10 18268148 18268342 + 2 NA intron (NM_000724, intron 1 of 12) L2b|LINE|L2 7523 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 327.5-9 chr7 32506656 32506911 + 2 NA intron (NM_015060, intron 1 of 15) intron (NM_015060, intron 1 of 15) 11294 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 267.5-24 chr5 29638101 29638330 + 2 NA Intergenic L1MA6|LINE|L1 -242239 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 150.75-16 chr15 80351374 80351567 + 2 NA Intergenic LTR75B|LTR|ERVL -9665 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 280.75-4 chr2 118735724 118736004 + 2 NA Intergenic L1MB3|LINE|L1 112319 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 234.25-37 chr8 136293659 136293842 + 2 NA Intergenic Intergenic -237048 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 409 chr14 20713004 20713597 + 2 NA Intergenic HERVIP10F-int|LTR|ERV1 24536 NM_001097577 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 304-3 chr14 37391284 37391504 + 2 NA intron (NM_138731, intron 11 of 13) L1MEg|LINE|L1 193457 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 228.25-10 chr10 129187570 129187833 + 2 NA Intergenic L2c|LINE|L2 274868 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 198.75-12 chr14 75844114 75844246 + 2 NA intron (NM_015072, intron 28 of 31) L1MD|LINE|L1 137815 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 223.5-73 chr7 44080483 44080616 + 2 NA intron (NR_156112, intron 2 of 10) intron (NR_156112, intron 2 of 10) 1981 NR_156112 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 353.75-5 chr3 86859125 86859423 + 2 NA Intergenic L1M1|LINE|L1 131875 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 434-3 chr2 107523367 107523671 + 2 NA Intergenic Intergenic -5900 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 262.75-12 chr2 189060669 189060868 + 2 NA exon (NM_000393, exon 31 of 54) exon (NM_000393, exon 31 of 54) 65138 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 283-17 chr9 28288998 28289147 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 430233 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 254.25-26 chr8 121924203 121924603 + 2 NA Intergenic Intergenic -282963 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 338-11 chr8 101812304 101812633 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -21499 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 361-3 chr4 112826592 112826901 + 2 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) 8749 NM_001354266 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 302-15 chr6 63912295 63912476 + 2 NA intron (NM_001292009, intron 35 of 43) MER33|DNA|hAT-Charlie 105549 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 213.5-27 chr2 103852226 103852367 + 2 NA Intergenic L1MEd|LINE|L1 556036 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 313-2 chr11 12401340 12401545 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 23871 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 350.75-3 chr17 71064291 71064560 + 2 NA Intergenic Intergenic 137754 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 383-9 chr5 165491727 165492088 + 2 NA Intergenic Intergenic 1021628 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 284-12 chr2 182903351 182903622 + 2 NA Intergenic Intergenic -36849 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 277.25-14 chr2 168274767 168275149 + 2 NA Intergenic L1ME4b|LINE|L1 -27363 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 342.75-5 chr8 82487553 82487903 + 2 NA Intergenic Intergenic -424376 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 407-2 chr7 25245733 25245996 + 2 NA Intergenic Intergenic -17378 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 412.5 chr1 111585242 111585466 + 2 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -21351 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 285.5-20 chr8 87098924 87099233 + 2 NA intron (NM_173538, intron 4 of 10) L2c|LINE|L2 232663 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 400 chr1 112100732 112100998 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 110329 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 467-4 chr5 134092850 134093275 + 2 NA Intergenic Intergenic -21619 NM_003202 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 310.75-6 chr2 44474939 44475102 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 113073 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 267-3 chr11 70469898 70470119 + 2 NA non-coding (NR_110766, exon 9 of 9) non-coding (NR_110766, exon 9 of 9) 71479 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 246-8 chr16 11691695 11691891 + 2 NA exon (NM_001324024, exon 7 of 11) exon (NM_001324024, exon 7 of 11) 23338 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 255.5-14 chr2 76933285 76933622 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -52512 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 294.75-7 chr17 19378091 19378255 + 2 NA promoter-TSS (NM_002749) promoter-TSS (NM_002749) -260 NM_001368769 27077 Hs.309467 NM_015681 ENSG00000108641 B9D1 B9|EPPB9|JBTS27|MKS9|MKSR-1|MKSR1 B9 domain containing 1 protein-coding 324.25-8 chr8 99467129 99467347 + 2 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 69492 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 342-2 chr10 90664484 90664841 + 2 NA Intergenic L1MA5|LINE|L1 -123857 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 402.25-4 chr3 37902177 37902564 + 2 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) 40490 NM_005808 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 118.75-69 chr3 65355236 65355348 + 2 NA 3' UTR (NM_001365903, exon 25 of 25) 3' UTR (NM_001365903, exon 25 of 25) -538524 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 334.75-5 chr2 187346694 187346956 + 2 NA intron (NM_001369434, intron 15 of 15) intron (NM_001369434, intron 15 of 15) 101427 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 267.5-5 chr12 23154224 23154455 + 2 NA Intergenic L1MB3|LINE|L1 -21297 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 259.5-21 chr4 44329781 44330033 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 118902 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 260-10 chr16 47225829 47226000 + 2 NA intron (NM_030790, intron 13 of 17) L1M4|LINE|L1 81846 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 350.5-5 chr12 129906048 129906391 + 2 NA Intergenic Intergenic -2194 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 219-9 chr14 102308826 102308962 + 2 NA Intergenic AluSx|SINE|Alu -3730 NM_001353827 5891 Hs.36859 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 237.75-38 chr5 31015908 31016067 + 2 NA Intergenic L2b|LINE|L2 -177699 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 387.25 chr11 97210660 97210978 + 2 NA Intergenic L1ME2|LINE|L1 702394 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 497-3 chr8 113811111 113811551 + 2 NA Intergenic Intergenic -374392 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 306.5-2 chr14 82811319 82811530 + 2 NA Intergenic Intergenic 168792 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 272.5-14 chr4 61668925 61669163 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 466872 NM_001371342 259.75-8 chr15 94011786 94012033 + 2 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 96029 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 269-6 chr14 64312188 64312348 + 2 NA intron (NM_001291712, intron 2 of 13) L1MDa|LINE|L1 -17858 NM_001437 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 329.5-12 chr7 53712689 53712947 + 2 NA intron (NR_038371, intron 4 of 5) L1MCa|LINE|L1 99113 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 264-32 chr8 130665723 130665918 + 2 NA Intergenic MIRb|SINE|MIR -222146 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 327-3 chr11 57731468 57731665 + 2 NA intron (NM_001347891, intron 2 of 7) MER4E|LTR|ERV1 -9684 NM_001321335 280636 Hs.655373 NM_170746 ENSG00000211450 SELENOH C11orf31|C17orf10|SELH selenoprotein H protein-coding 279.25-18 chr4 66907258 66907445 + 2 NA Intergenic L1ME1|LINE|L1 514649 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 162.5-12 chr10 64816641 64816856 + 2 NA Intergenic Intergenic -8780 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 369.5-2 chr14 79331976 79332231 + 2 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 52723 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 444.5-4 chr2 229858542 229858899 + 2 NA intron (NM_001348330, intron 4 of 41) intron (NM_001348330, intron 4 of 41) 62959 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 117.25-48 chr20 37608613 37608730 + 2 NA Intergenic LTR16A2|LTR|ERVL 14448 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 364-3 chr12 40450619 40450922 + 2 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 57376 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 209-18 chr20 50902351 50902504 + 2 NA intron (NM_001282532, intron 2 of 3) intron (NM_001282532, intron 2 of 3) 7364 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 284.75-8 chr2 48769865 48770157 + 2 NA intron (NM_001198593, intron 10 of 10) L1ME4c|LINE|L1 -14287 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 324 chr10 53394739 53394973 + 2 NA Intergenic Intergenic -623156 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 149 chr1 24805910 24806012 + 2 NA intron (NM_013943, intron 2 of 5) intron (NM_013943, intron 2 of 5) 60514 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 206-34 chr6 151001984 151002156 + 2 NA intron (NR_146720, intron 21 of 28) intron (NR_146720, intron 21 of 28) -4938 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 192.25-27 chr4 35691656 35691854 + 2 NA Intergenic Intergenic 552184 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 337.25 chr12 83106885 83107089 + 2 NA intron (NM_152588, intron 11 of 11) L1MEd|LINE|L1 419832 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 148-65 chr8 102252914 102253023 + 2 NA TTS (NR_125415) TTS (NR_125415) 13517 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 180-10 chr10 51061612 51061751 + 2 NA TTS (NR_120678) TTS (NR_120678) 6871 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 259.75-16 chr4 53043932 53044129 + 2 NA intron (NM_152540, intron 5 of 8) ERV3-16A3_LTR|LTR|ERVL 181713 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 330.25-5 chr7 67651897 67652079 + 2 NA Intergenic AluJo|SINE|Alu 316012 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 236-11 chr12 59134016 59134205 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -213572 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 226-26 chr6 67937694 67937917 + 2 NA Intergenic Intergenic -117546 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 255-29 chr9 78404296 78404504 + 2 NA Intergenic Intergenic 107275 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 173.25-41 chr3 9423191 9423329 + 2 NA intron (NM_001080517, intron 1 of 22) intron (NM_001080517, intron 1 of 22) 25560 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 229.5-52 chr8 99363952 99364110 + 2 NA intron (NM_017890, intron 19 of 61) L1M1|LINE|L1 172699 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 282-23 chr8 59193699 59193860 + 2 NA Intergenic Intergenic 74569 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 139.5-38 chr2 11218372 11218451 + 2 NA intron (NM_001321643, intron 11 of 32) intron (NM_001321643, intron 11 of 32) 62944 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 209-3 chr11 29492737 29492939 + 2 NA Intergenic Intergenic -101575 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 157.25-67 chrX 91077272 91077505 + 2 NA Intergenic HERV16-int|LTR|ERVL -357451 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 144.5-31 chr12 129565896 129566036 + 2 NA intron (NM_133448, intron 2 of 8) Charlie1a|DNA|hAT-Charlie 338059 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 204-23 chr2 195796159 195796299 + 2 NA intron (NM_018897, intron 56 of 64) intron (NM_018897, intron 56 of 64) 139003 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 294.5-11 chr21 30694946 30695132 + 2 NA Intergenic Intergenic 23738 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 321.5-5 chr12 43721770 43722046 + 2 NA 3' UTR (NM_001098614, exon 9 of 9) 3' UTR (NM_001098614, exon 9 of 9) 36882 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 322.5-24 chr8 72771160 72771360 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 39215 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 249-22 chr21 34010627 34010766 + 2 NA Intergenic L1MC3|LINE|L1 34314 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 247-27 chr6 65999821 66000070 + 2 NA Intergenic Intergenic 212066 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 427-2 chr20 15500591 15500865 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 303888 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 376 chr15 72098597 72098889 + 2 NA intron (NM_006901, intron 1 of 41) FLAM_C|SINE|Alu -15515 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 179.5-69 chr4 8025482 8025625 + 2 NA intron (NM_001130084, intron 11 of 19) intron (NM_001130084, intron 11 of 19) -20172 NR_029511 407052 NR_029511 ENSG00000207807 MIR95 MIRN95|hsa-mir-95|miR-95 microRNA 95 ncRNA 215.75-3 chr11 93468579 93468734 + 2 NA Intergenic L1MC4|LINE|L1 74735 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 215.75 chr10 64718559 64718749 + 2 NA Intergenic Intergenic -106874 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 270-18 chr22 37484728 37484887 + 2 NA intron (NM_002405, intron 1 of 7) intron (NM_002405, intron 1 of 7) 1577 NM_002405 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 296.5-5 chr10 89062414 89062757 + 2 NA promoter-TSS (NR_039826) promoter-TSS (NR_039826) -751 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 193-32 chr2 63468448 63468587 + 2 NA intron (NR_148704, intron 7 of 18) HAL1|LINE|L1 -30510 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 157.5-91 chr7 77544904 77545032 + 2 NA intron (NM_001131009, intron 1 of 16) Charlie23a|DNA|hAT-Charlie 6925 NM_001131008 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 310-26 chr8 116620309 116620475 + 2 NA Intergenic L1MA2|LINE|L1 -31708 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 270-9 chr15 77360772 77360933 + 2 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 59252 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 202.75-3 chr1 96236322 96236432 + 2 NA Intergenic Intergenic 137748 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 224-7 chr15 60468317 60468523 + 2 NA intron (NM_024611, intron 3 of 15) intron (NM_024611, intron 3 of 15) 10722 NM_024611 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 271 chr1 55929366 55929601 + 2 NA intron (NR_147162, intron 1 of 2) MIRb|SINE|MIR 15480 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 224.5-25 chr20 48265135 48265255 + 2 NA Intergenic L2a|LINE|L2 -94716 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 176-4 chr1 198236069 198236165 + 2 NA intron (NM_133494, intron 2 of 9) intron (NM_133494, intron 2 of 9) 79119 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 393-6 chr5 24859138 24859437 + 2 NA Intergenic Intergenic -18704 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 175.25-54 chr8 82707360 82707525 + 2 NA Intergenic Intergenic -204662 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 418-4 chr5 93569647 93570073 + 2 NA intron (NR_021490, intron 1 of 5) intron (NR_021490, intron 1 of 5) 1483 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 221-27 chr3 19172246 19172405 + 2 NA intron (NM_144633, intron 1 of 15) L2b|LINE|L2 23815 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 472.25-2 chr6 120183933 120184351 + 2 NA Intergenic L1MA7|LINE|L1 168963 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 156-32 chr16 79262264 79262398 + 2 NA Intergenic Intergenic 338406 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 335.5 chr1 18674058 18674325 + 2 NA intron (NM_001135254, intron 4 of 8) L2a|LINE|L2 43345 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 138-63 chr6 10335180 10335259 + 2 NA Intergenic MIRc|SINE|MIR -69283 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 181-41 chr4 176424498 176424623 + 2 NA Intergenic Intergenic 104594 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 189-51 chr8 126671782 126671946 + 2 NA Intergenic L1MB3|LINE|L1 -113386 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 450.75-4 chr3 62649932 62650208 + 2 NA intron (NM_003716, intron 5 of 29) L1MB7|LINE|L1 225346 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 327.25 chr1 203441820 203442015 + 2 NA Intergenic Intergenic -33889 NM_002725 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 229.75-22 chr4 95028797 95028960 + 2 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -22799 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 253.5-17 chr14 69571567 69571794 + 2 NA exon (NM_001271507, exon 2 of 2) exon (NM_001271507, exon 2 of 2) 3191 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 359-6 chr4 95873030 95873392 + 2 NA Intergenic MIR|SINE|MIR 33118 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 178-21 chr16 74635934 74636073 + 2 NA intron (NM_001370543, intron 8 of 12) intron (NM_001370543, intron 8 of 12) -28889 NM_012201 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 327.5-13 chrX 127131204 127131408 + 2 NA Intergenic L1MA1|LINE|L1 311577 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 201-17 chr14 20791378 20791630 + 2 NA Intergenic Intergenic 10236 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 290-13 chr5 8149915 8150133 + 2 NA Intergenic AluSc|SINE|Alu 280876 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 406-7 chr8 134056553 134056996 + 2 NA Intergenic Intergenic 170278 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 318.5-12 chr2 73569834 73570083 + 2 NA intron (NM_015120, intron 15 of 22) L2|LINE|L2 72464 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 319-2 chr10 32117080 32117245 + 2 NA Intergenic Intergenic -60737 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 262 chr1 37338257 37338503 + 2 NA Intergenic Intergenic 136063 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 188-44 chr8 111452470 111452581 + 2 NA intron (NR_146282, intron 2 of 3) Charlie3|DNA|hAT-Charlie 75886 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 352.25-5 chr9 32360648 32360863 + 2 NA Intergenic L1M2|LINE|L1 -23848 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 286.75-2 chr18 71187251 71187439 + 2 NA Intergenic Intergenic 391611 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 436-3 chr8 120277937 120278257 + 2 NA intron (NM_021110, intron 26 of 47) intron (NM_021110, intron 26 of 47) 152995 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 269.5-11 chr12 125614098 125614310 + 2 NA intron (NM_052907, intron 5 of 8) L1PA16|LINE|L1 -8248 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 319-7 chr22 43297739 43298077 + 2 NA intron (NM_173050, intron 3 of 21) intron (NM_173050, intron 3 of 21) 21966 NR_134582 101927447 Hs.621227 NR_134582 ENSG00000203527 LOC101927447 - uncharacterized LOC101927447 ncRNA 268.25-12 chr3 140128709 140128986 + 2 NA intron (NM_022131, intron 1 of 16) LTR33|LTR|ERVL 193662 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 309.25-2 chr12 28579296 28579504 + 2 NA Intergenic Intergenic -388662 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 420.5-4 chr8 104791923 104792334 + 2 NA Intergenic Intergenic -203104 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 278.75-8 chr3 97657360 97657639 + 2 NA intron (NM_001080448, intron 14 of 17) MIRc|SINE|MIR -107022 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 242.5-5 chr11 75267955 75268141 + 2 NA intron (NM_004041, intron 14 of 15) MER104|DNA|TcMar-Tc2 27274 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 413-3 chr7 13801949 13802331 + 2 NA Intergenic Intergenic 184374 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 178-25 chr2 108219102 108219207 + 2 NA Intergenic Intergenic -1313 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 243.5-28 chr7 47866073 47866357 + 2 NA intron (NM_138295, intron 25 of 56) MamSINE1|SINE|tRNA-RTE 70924 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 397.5-9 chr8 93686174 93686477 + 2 NA intron (NR_033858, intron 1 of 10) intron (NR_033858, intron 1 of 10) 14108 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 337.75-3 chr12 4888637 4888854 + 2 NA Intergenic L1MB3|LINE|L1 -21160 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 341-2 chr11 12873755 12874080 + 2 NA intron (NM_021961, intron 5 of 12) intron (NM_021961, intron 5 of 12) 115631 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 447-4 chrX 78200936 78201461 + 2 NA Intergenic Intergenic -61548 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 194.75-31 chr4 42822255 42822364 + 2 NA Intergenic Intergenic -70957 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 224-2 chr1 228763896 228764075 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 28506 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 155-14 chr12 78590520 78590649 + 2 NA Intergenic Intergenic -230838 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 301-15 chr17 77590991 77591195 + 2 NA Intergenic Intergenic 44152 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 501-2 chr2 29410846 29411287 + 2 NA intron (NM_004304, intron 4 of 28) Tigger3|DNA|TcMar-Tigger 64311 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 388.5 chr1 71845383 71845724 + 2 NA intron (NM_173808, intron 2 of 6) MIR|SINE|MIR -8541 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 181-18 chr12 14969025 14969179 + 2 NA Intergenic L1ME1|LINE|L1 -3940 NM_006205 5149 Hs.54471 NM_006205 ENSG00000139053 PDE6H ACHM6|RCD3 phosphodiesterase 6H protein-coding 226-35 chr8 88398259 88398464 + 2 NA Intergenic Intergenic -70878 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 422.5-3 chr5 26779757 26780082 + 2 NA Intergenic L1MD|LINE|L1 258667 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 154-27 chr17 69519598 69519737 + 2 NA intron (NM_001330450, intron 5 of 11) intron (NM_001330450, intron 5 of 11) 17405 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 715 chr7 27280617 27281146 + 2 NA Intergenic Intergenic -33652 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 314-11 chr4 44283464 44283699 + 2 NA intron (NM_198353, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 165228 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 236 chr1 17698307 17698624 + 2 NA TTS (NM_001011722) TTS (NM_001011722) -56868 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 247-35 chr8 119341965 119342175 + 2 NA Intergenic L1MC1|LINE|L1 16899 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 142-69 chr8 68071109 68071244 + 2 NA intron (NM_024870, intron 13 of 39) intron (NM_024870, intron 13 of 39) 119130 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 222.5-13 chr14 20295789 20296061 + 2 NA intron (NM_138376, intron 6 of 9) intron (NM_138376, intron 6 of 9) 10026 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 244.5-12 chr17 61255338 61255488 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 112291 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 255.25-9 chr14 59766065 59766260 + 2 NA intron (NM_021136, intron 1 of 8) AluSx|SINE|Alu 104614 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 285-21 chr6 68044319 68044557 + 2 NA Intergenic Intergenic -10913 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 200.75-13 chr14 90278886 90279035 + 2 NA intron (NM_017970, intron 13 of 13) intron (NM_017970, intron 13 of 13) 21021 NM_001330212 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 152.5-88 chr5 162640268 162640368 + 2 NA Intergenic L1MA1|LINE|L1 572676 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 336.75-6 chr4 53775869 53776177 + 2 NA Intergenic Intergenic 80122 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 232.5-11 chr12 23536139 23536332 + 2 NA intron (NM_152989, intron 17 of 17) intron (NM_152989, intron 17 of 17) 48351 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 235.5-45 chr5 55675522 55675788 + 2 NA intron (NM_001349385, intron 3 of 14) intron (NM_001349385, intron 3 of 14) 17398 NM_001258287 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 230-24 chr6 165514699 165514891 + 2 NA intron (NM_006661, intron 3 of 22) L1M4a2|LINE|L1 147305 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 191-40 chr4 103883134 103883285 + 2 NA Intergenic Intergenic -163224 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 255.25-11 chr17 32244987 32245215 + 2 NA Intergenic (TTGC)n|Simple_repeat|Simple_repeat -20731 NM_001330181 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 168-2 chr1 70999695 70999808 + 2 NA intron (NM_198719, intron 2 of 3) intron (NM_198719, intron 2 of 3) -46755 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 459.5 chr8 52227223 52227632 + 2 NA intron (NM_001352828, intron 4 of 27) L2c|LINE|L2 21217 NM_001352869 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 301-7 chr10 82824121 82824404 + 2 NA intron (NR_163252, intron 3 of 8) L1MB7|LINE|L1 -591342 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 250-14 chr2 120774540 120774686 + 2 NA intron (NM_001371271, intron 1 of 13) MER102c|DNA|hAT-Charlie -17668 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 234-47 chr9 71163795 71164010 + 2 NA intron (NM_001366143, intron 1 of 25) L2c|LINE|L2 -42281 NM_001366149 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 409-6 chr7 112933499 112933903 + 2 NA intron (NM_152556, intron 1 of 4) MER5A|DNA|hAT-Charlie 6174 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 138-16 chr12 41833140 41833280 + 2 NA Intergenic LTR16D|LTR|ERVL 69021 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 371.5 chr1 86695042 86695369 + 2 NA intron (NR_135837, intron 3 of 4) intron (NR_135837, intron 3 of 4) 9288 NR_135837 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 213.25-15 chr16 56920257 56920368 + 2 NA Intergenic Intergenic -11830 NM_014685 9709 Hs.146393 NM_014685 ENSG00000051108 HERPUD1 HERP|Mif1|SUP homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding 303.5-6 chr14 87901727 87901968 + 2 NA Intergenic L2a|LINE|L2 91335 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 228-17 chr17 61029919 61030093 + 2 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 337698 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 151-30 chr18 54084083 54084223 + 2 NA Intergenic Intergenic 138259 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 172.75-39 chr7 51547502 51547677 + 2 NA Intergenic Intergenic -154333 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 290-12 chr4 11242903 11243107 + 2 NA Intergenic L1MC4|LINE|L1 -125822 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 285.5-22 chr8 128408837 128409037 + 2 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 155742 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 289-13 chr6 36225893 36226186 + 2 NA intron (NM_015695, intron 11 of 12) L1ME4a|LINE|L1 -17129 NM_001145716 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 298-10 chr16 22927594 22927821 + 2 NA Intergenic Intergenic 113545 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 177-60 chr8 103690866 103691042 + 2 NA intron (NM_001348488, intron 3 of 25) L1MA8|LINE|L1 -128266 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 171.25-51 chr7 42729351 42729439 + 2 NA Intergenic Intergenic -22948 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 174.5-10 chr10 82960049 82960220 + 2 NA intron (NR_163253, intron 8 of 10) intron (NR_163253, intron 8 of 10) 716955 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 129.5-52 chr20 21756287 21756428 + 2 NA Intergenic Intergenic 50693 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 265-30 chr8 117542743 117543055 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 22186 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 242-36 chr8 67823589 67823729 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -77299 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 242-14 chr14 49868728 49868910 + 2 NA Intergenic Intergenic -5970 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 298-12 chr2 8159094 8159356 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 169194 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 272-13 chr17 54923097 54923309 + 2 NA intron (NM_001321173, intron 7 of 9) L1MB5|LINE|L1 22351 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 315.25-5 chr17 72827031 72827281 + 2 NA intron (NM_001352692, intron 6 of 9) L1MB7|LINE|L1 -186684 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 351.5-4 chr3 66572826 66573041 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -72512 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 255.25-6 chr11 80794726 80794872 + 2 NA Intergenic Intergenic -31996 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 322-8 chr3 126792092 126792408 + 2 NA intron (NM_032343, intron 4 of 7) L1MB3|LINE|L1 88010 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 240-12 chr16 56712139 56712334 + 2 NA Intergenic L1ME2|LINE|L1 -17893 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 249.25-24 chr7 114163936 114164196 + 2 NA intron (NR_033766, intron 1 of 19) Charlie25|DNA|hAT-Charlie 77739 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 366.5-8 chr3 191988516 191988997 + 2 NA Intergenic L1MA9|LINE|L1 -249874 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 293.75-8 chr20 20931912 20932175 + 2 NA Intergenic Intergenic 174315 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 238.25-30 chr9 115951345 115951464 + 2 NA Intergenic Intergenic -26197 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 257.25-15 chr22 25869513 25869692 + 2 NA intron (NM_001318245, intron 22 of 43) intron (NM_001318245, intron 22 of 43) 127414 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 275.75-20 chr7 68791580 68791835 + 2 NA Intergenic Intergenic 771454 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 337.75-10 chr8 123449556 123449895 + 2 NA Intergenic L2-1_AMi|LINE|L2 32951 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 236-38 chr8 124549334 124549529 + 2 NA intron (NM_001311168, intron 3 of 3) intron (NM_001311168, intron 3 of 3) 10308 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 338.25 chr1 98432765 98432965 + 2 NA Intergenic Intergenic 222154 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 343.75-8 chr5 108382699 108382977 + 2 NA promoter-TSS (NM_001163315) promoter-TSS (NM_001163315) -740 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 409.25 chr5 33076373 33076607 + 2 NA Intergenic L1ME2|LINE|L1 129047 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 153.5-57 chr22 29179103 29179233 + 2 NA Intergenic L1M5|LINE|L1 -26728 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 314.5-4 chr17 51936099 51936310 + 2 NA intron (NM_001082533, intron 3 of 9) L2a|LINE|L2 222510 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 237-17 chr2 50123829 50124020 + 2 NA intron (NM_001330093, intron 18 of 22) L2a|LINE|L2 -149721 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 309-19 chr6 120518916 120519198 + 2 NA Intergenic L1PA13|LINE|L1 503878 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 204-22 chr2 172747896 172748002 + 2 NA intron (NM_007023, intron 1 of 30) L1MA8|LINE|L1 -11743 NR_026995 91149 Hs.711021 NR_026995 ENSG00000228016 RAPGEF4-AS1 - RAPGEF4 antisense RNA 1 ncRNA 261-18 chr16 46475319 46475508 + 2 NA intron (NR_026556, intron 15 of 16) intron (NR_026556, intron 15 of 16) 93684 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 186.5-19 chr14 57225288 57225597 + 2 NA intron (NM_006544, intron 12 of 17) L1M4|LINE|L1 43463 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 347.5-3 chr11 115851230 115851551 + 2 NA Intergenic Intergenic -91190 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 242.5-11 chr17 61031893 61032055 + 2 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 335730 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 241-7 chr11 36662931 36663092 + 2 NA Intergenic AluJr|SINE|Alu -64732 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 224.25-34 chrX 87143045 87143252 + 2 NA Intergenic Intergenic -374654 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 277-26 chr8 83542454 83542631 + 2 NA Intergenic Intergenic 138784 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 245.75-7 chr15 94072226 94072504 + 2 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 35573 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 220-7 chr11 77165388 77165665 + 2 NA intron (NM_001127180, intron 14 of 48) MIRc|SINE|MIR 37280 NM_001369365 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 252.25-2 chr11 63460739 63460871 + 2 NA TTS (NM_001146728) TTS (NM_001146728) 30362 NM_054108 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 285-24 chr8 119649515 119649673 + 2 NA intron (NM_001330600, intron 1 of 25) L1MB8|LINE|L1 -10755 NM_001130863 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 220.25-35 chr5 102596761 102596973 + 2 NA intron (NR_047462, intron 1 of 1) intron (NR_047462, intron 1 of 1) 15499 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 209-5 chr11 104506576 104506775 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 102627 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 166.5-102 chr8 113211201 113211329 + 2 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 165887 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 293.75-14 chr6 75066594 75066849 + 2 NA Intergenic Intergenic 62061 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 337.5-10 chr7 7102330 7102520 + 2 NA Intergenic Intergenic -5639 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 347.5-11 chr2 196588198 196588543 + 2 NA intron (NM_001348768, intron 1 of 28) L2b|LINE|L2 4613 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 265.5-5 chr10 80895874 80896019 + 2 NA Intergenic Intergenic 246149 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 306.5-11 chr4 41470401 41470592 + 2 NA intron (NM_001289122, intron 1 of 25) L2|LINE|L2 -67661 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 410-4 chr3 12770542 12770758 + 2 NA Intergenic LTR13|LTR|ERVK -1193 NM_001284406 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 358 chr12 42825835 42826158 + 2 NA Intergenic L1M2|LINE|L1 133780 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 369.75-2 chr12 19301381 19301665 + 2 NA intron (NM_001143821, intron 14 of 27) intron (NM_001143821, intron 14 of 27) 96198 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 165.25-32 chr21 22858897 22858984 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -220344 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 274-2 chr1 50830619 50830883 + 2 NA intron (NM_007051, intron 2 of 18) intron (NM_007051, intron 2 of 18) 129516 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 339.25-4 chr4 37141518 37141781 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie 100342 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 141.5-30 chr14 50352584 50352756 + 2 NA intron (NM_001282236, intron 3 of 8) intron (NM_001282236, intron 3 of 8) 40346 NM_001003805 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 141.25-69 chr7 49891043 49891180 + 2 NA intron (NR_136188, intron 2 of 3) L1ME3A|LINE|L1 115778 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 181.5-50 chr5 18852803 18852945 + 2 NA Intergenic HAL1b|LINE|L1 1033398 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 275.5 chr1 218581348 218581530 + 2 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 71344 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 312.25-3 chr14 69408653 69409000 + 2 NA intron (NM_001330185, intron 1 of 5) intron (NM_001330185, intron 1 of 5) 10134 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 403-2 chr13 43068674 43068952 + 2 NA intron (NM_013238, intron 2 of 5) intron (NM_013238, intron 2 of 5) -44352 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 329.5-15 chr8 134247398 134247588 + 2 NA Intergenic L1MA3|LINE|L1 -350578 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 245-13 chr2 44819562 44819719 + 2 NA Intergenic Intergenic 119248 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 327.5-3 chr14 47423546 47423835 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -80444 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 224.5-41 chr9 30276677 30276862 + 2 NA Intergenic Intergenic 131685 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 349.75-7 chr5 77287099 77287464 + 2 NA intron (NM_001029853, intron 1 of 20) L1ME3A|LINE|L1 76601 NM_003719 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 232 chr1 26626761 26626979 + 2 NA Intergenic L1MC4|LINE|L1 67261 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 401-3 chr16 24393215 24393471 + 2 NA Intergenic Intergenic 137790 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 311-2 chr10 4817181 4817388 + 2 NA Intergenic Intergenic -8893 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 311.5-9 chr4 174629086 174629429 + 2 NA Intergenic L2c|LINE|L2 -106359 NM_001256306 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 256-6 chr10 68946167 68946335 + 2 NA intron (NM_024045, intron 14 of 14) Tigger15a|DNA|TcMar-Tigger -9919 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 204-14 chr14 98522309 98522487 + 2 NA Intergenic L1MA4|LINE|L1 -189215 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 225-49 chr9 118920404 118920635 + 2 NA Intergenic L1MA2|LINE|L1 240848 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 264.75-24 chr8 108406297 108406768 + 2 NA Intergenic Intergenic -37051 NM_001329495 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 156.5-36 chr2 128331194 128331287 + 2 NA Intergenic L1ME4a|LINE|L1 -12372 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 268.75-30 chr9 29148661 29148926 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 63506 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 222.5-8 chr10 113054596 113054785 + 2 NA intron (NM_001198528, intron 4 of 14) intron (NM_001198528, intron 4 of 14) 9335 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 343.5-7 chr7 36034696 36034995 + 2 NA Intergenic AluSz6|SINE|Alu -60465 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 278.25-19 chr5 110505986 110506207 + 2 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 7819 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 138.25-53 chr21 26878768 26878839 + 2 NA Intergenic Intergenic -33394 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 499 chr2 206560752 206561213 + 2 NA intron (NM_003812, intron 11 of 25) intron (NM_003812, intron 11 of 25) -83245 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 189-25 chr18 37794814 37794930 + 2 NA Intergenic MIR|SINE|MIR 137737 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 263-22 chr5 27313897 27314152 + 2 NA Intergenic Intergenic -158268 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 308.75-9 chr5 117124556 117124810 + 2 NA Intergenic L1MCa|LINE|L1 -290829 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 254-17 chr6 62203312 62203541 + 2 NA intron (NR_146874, intron 1 of 13) L2c|LINE|L2 82799 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 423-5 chr8 123602697 123602993 + 2 NA Intergenic MIRb|SINE|MIR 50956 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 250-27 chr7 42768359 42768544 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -62004 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 147-71 chr6 136991216 136991317 + 2 NA intron (NR_027994, intron 1 of 2) L1ME4c|LINE|L1 1965 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 167.5-28 chr16 88799456 88799582 + 2 NA Intergenic Intergenic -4270 NM_030928 81620 Hs.122908 NM_030928 ENSG00000167513 CDT1 DUP|RIS2 chromatin licensing and DNA replication factor 1 protein-coding 377-3 chr6 153706174 153706609 + 2 NA Intergenic L2a|LINE|L2 -304105 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 291.75 chr1 225414789 225415052 + 2 NA intron (NM_194442, intron 7 of 13) intron (NM_194442, intron 7 of 13) 13118 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 249.25-8 chr15 69211521 69211670 + 2 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) 50960 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 365.25-3 chr22 45825272 45825568 + 2 NA intron (NM_013236, intron 10 of 11) L1MB3|LINE|L1 64896 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 326.25-7 chr2 118709221 118709470 + 2 NA Intergenic MIRb|SINE|MIR -106379 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 181-46 chr8 80756190 80756306 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 118220 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 326-12 chr2 101422720 101422920 + 2 NA intron (NM_001367510, intron 2 of 10) intron (NM_001367510, intron 2 of 10) -35317 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 407-3 chr8 128195861 128196233 + 2 NA Intergenic Intergenic 45931 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 127-74 chr5 10453731 10453820 + 2 NA intron (NM_001201466, intron 4 of 5) intron (NM_001201466, intron 4 of 5) 11896 NM_001201466 83853 Hs.381089 NM_031916 ENSG00000145491 ROPN1L ASP|RSPH11 rhophilin associated tail protein 1 like protein-coding 221-34 chr4 162060116 162060286 + 2 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 37468 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 280-15 chr20 44004655 44004911 + 2 NA intron (NM_001098797, intron 2 of 8) intron (NM_001098797, intron 2 of 8) 58887 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 207.75-18 chr18 37470008 37470207 + 2 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) -3603 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 199.25-30 chr4 119759412 119759524 + 2 NA Intergenic Intergenic 45047 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 210-5 chr11 111705869 111706149 + 2 NA intron (NM_015191, intron 8 of 14) MIR|SINE|MIR 60380 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 336.25-8 chr5 34903916 34904112 + 2 NA Intergenic AluJr|SINE|Alu 11490 NM_002853 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 207.5-60 chr8 64453449 64453594 + 2 NA Intergenic Intergenic 74372 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 273-7 chr12 101934704 101934964 + 2 NA Intergenic MIRb|SINE|MIR 57254 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 230.5-3 chr10 58720254 58720429 + 2 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 5326 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 294-10 chr2 235116810 235117083 + 2 NA Intergenic Intergenic 89211 NM_001371306 281.25-16 chr8 120018846 120019118 + 2 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -106120 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 292-11 chr3 71365649 71366238 + 2 NA intron (NR_146142, intron 3 of 19) AluSc|SINE|Alu -61172 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 177.75-24 chr2 53547636 53547741 + 2 NA Intergenic Intergenic -220095 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 373 chr12 22705117 22705330 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 80052 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 174.5-77 chr8 33087048 33087214 + 2 NA Intergenic Intergenic 365296 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 248.5-11 chr17 74901741 74901948 + 2 NA Intergenic MIRb|SINE|MIR -8211 NM_178128 283985 Hs.448845 NM_178128 ENSG00000172782 FADS6 FP18279 fatty acid desaturase 6 protein-coding 275.75 chr1 248754751 248755130 + 2 NA intron (NM_001291283, intron 1 of 5) intron (NM_001291283, intron 1 of 5) 819 NM_001085474 646627 Hs.146268 NM_001085474 ENSG00000259823 LYPD8 - LY6/PLAUR domain containing 8 protein-coding 122.25-75 chr5 19476406 19476468 + 2 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 409835 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 326-16 chr7 2345126 2345369 + 2 NA Intergenic L1ME3Cz|LINE|L1 -8839 NM_001362792 8662 Hs.371001 NM_003751 ENSG00000106263 EIF3B EIF3-ETA|EIF3-P110|EIF3-P116|EIF3S9|PRT1 eukaryotic translation initiation factor 3 subunit B protein-coding 219.75-29 chr4 66391649 66391787 + 2 NA Intergenic Intergenic 114894 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 206.5-51 chr7 43602789 43602980 + 2 NA intron (NM_004760, intron 2 of 6) intron (NM_004760, intron 2 of 6) 19776 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 187.25-41 chr3 114637352 114637530 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -12496 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 178.75-10 chr14 71198666 71198836 + 2 NA Intergenic L3|LINE|CR1 -121725 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 273-24 chr5 122140364 122140571 + 2 NA intron (NM_207317, intron 1 of 1) L1MD2|LINE|L1 10921 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 233.5-37 chr3 117592076 117592224 + 2 NA Intergenic L1MC3|LINE|L1 98775 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 213-10 chr10 31315425 31315541 + 2 NA intron (NR_148979, intron 1 of 2) intron (NR_148979, intron 1 of 2) -2934 NM_001323638 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 322.5-11 chr20 574779 575018 + 2 NA Intergenic L3|LINE|CR1 -31108 NM_177560 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 203.25-47 chr6 142276254 142276401 + 2 NA Intergenic Intergenic -25592 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 382.5-5 chr20 13797679 13797948 + 2 NA intron (NR_147981, intron 5 of 11) L1MC1|LINE|L1 12785 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 262.25 chr1 23654190 23654408 + 2 NA Intergenic Intergenic 26965 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 274-8 chr14 70723730 70723919 + 2 NA 3' UTR (NM_001284230, exon 12 of 12) 3' UTR (NM_001284230, exon 12 of 12) 25126 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 174.75-50 chr6 140246037 140246217 + 2 NA Intergenic Intergenic 40875 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 272-2 chr1 110883223 110883478 + 2 NA intron (NM_001040033, intron 2 of 8) L1ME1|LINE|L1 10202 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 229-21 chr20 58529096 58529242 + 2 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -13770 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 333.75 chr13 34940379 34940636 + 2 NA Intergenic Intergenic -1780 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 240.5-19 chr14 98519853 98520160 + 2 NA Intergenic Intergenic -191607 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 372-5 chr2 225287125 225287463 + 2 NA Intergenic Intergenic -112416 NM_001371273 321.75-20 chr7 6470412 6470725 + 2 NA intron (NM_001100603, intron 2 of 3) MER6|DNA|TcMar-Tigger 13584 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 322.5-25 chr8 85955302 85955595 + 2 NA Intergenic L1ME3G|LINE|L1 114220 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 326 chr1 45627682 45627872 + 2 NA 3' UTR (NM_021639, exon 13 of 13) 3' UTR (NM_021639, exon 13 of 13) -3723 NM_001190182 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 216-30 chr5 91712426 91712548 + 2 NA Intergenic L1MEc|LINE|L1 -329170 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 216.5-26 chr3 168077137 168077326 + 2 NA intron (NM_001308155, intron 1 of 14) MLT1J1|LTR|ERVL-MaLR 18693 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 247.25-11 chr18 69995837 69995983 + 2 NA Intergenic L1MEh|LINE|L1 -39111 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 369.25-5 chr9 79048995 79049191 + 2 NA Intergenic Intergenic 96573 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 205-2 chr1 67107257 67107393 + 2 NA intron (NM_001276352, intron 6 of 8) L1MEb|LINE|L1 27645 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 181.25-17 chr15 61339035 61339215 + 2 NA Intergenic MIRb|SINE|MIR -109823 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 439.5 chr10 81576808 81577398 + 2 NA Intergenic L1MB8|LINE|L1 -298091 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 353.75-9 chr5 28781571 28781869 + 2 NA Intergenic Intergenic -145150 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 318-17 chr4 126577089 126577378 + 2 NA Intergenic L1MC2|LINE|L1 -1055724 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 518.25 chr6 154840227 154840626 + 2 NA Intergenic Intergenic -12934 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 182-26 chr2 181635825 181635932 + 2 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 21227 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 404-3 chr16 58522504 58522841 + 2 NA intron (NR_049763, intron 48 of 49) L2a|LINE|L2 7193 NM_001160305 79918 Hs.731691 NM_024860 ENSG00000103037 SETD6 - SET domain containing 6, protein lysine methyltransferase protein-coding 274.5-19 chr2 118189555 118189732 + 2 NA Intergenic Intergenic -3257 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 267.5-36 chr9 30318775 30319085 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 89524 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 305.5-3 chr10 65824287 65824487 + 2 NA Intergenic Intergenic 252962 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 355.75-2 chr9 1118553 1118852 + 2 NA Intergenic Intergenic 67215 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 309-12 chr2 179910790 179911010 + 2 NA Intergenic Intergenic -49288 NM_001352808 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 242.25-4 chr12 48280098 48280326 + 2 NA Intergenic L2c|LINE|L2 -48768 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 221-8 chr10 66305214 66305330 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -620764 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 233.5-57 chr9 129114432 129114559 + 2 NA intron (NM_001193397, intron 1 of 9) intron (NM_001193397, intron 1 of 9) 2807 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 235-34 chr5 71631073 71631282 + 2 NA intron (NM_022132, intron 7 of 16) L2c|LINE|L2 43837 NM_001363147 64087 Hs.604789 NM_022132 ENSG00000131844 MCCC2 MCCB methylcrotonoyl-CoA carboxylase 2 protein-coding 296.75-5 chr22 48766069 48766286 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -14118 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 180.5-11 chr10 129142402 129142579 + 2 NA Intergenic Intergenic 229657 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 386.25-5 chr8 22132466 22132838 + 2 NA Intergenic Intergenic -1600 NM_005144 55806 Hs.272367 NM_005144 ENSG00000168453 HR ALUNC|AU|HSA277165|HYPT4|MUHH|MUHH1 HR lysine demethylase and nuclear receptor corepressor protein-coding 358.5-5 chr17 76063016 76063274 + 2 NA intron (NR_048541, intron 3 of 14) L1MCa|LINE|L1 9372 NM_014230 6730 Hs.514495 NM_014230 ENSG00000167881 SRP68 - signal recognition particle 68 protein-coding 209.25-15 chr17 69997172 69997303 + 2 NA Intergenic Intergenic 35530 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 233-27 chr6 25773640 25773847 + 2 NA intron (NM_005495, intron 8 of 11) intron (NM_005495, intron 8 of 11) 19001 NM_005495 10050 Hs.282931 NM_005495 ENSG00000146039 SLC17A4 KAIA2138 solute carrier family 17 member 4 protein-coding 295-13 chr5 160030384 160030555 + 2 NA intron (NM_003314, intron 2 of 7) MIRc|SINE|MIR 21330 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 378.5-4 chr3 134115502 134115722 + 2 NA Intergenic L1MB2|LINE|L1 -57964 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 205.5-14 chr14 64227949 64228145 + 2 NA intron (NM_001271876, intron 7 of 7) intron (NM_001271876, intron 7 of 7) 12093 NM_182910 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 251-36 chrX 8335796 8335979 + 2 NA Intergenic Intergenic -128943 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 251.5-31 chr7 71687435 71687642 + 2 NA intron (NM_022479, intron 9 of 10) intron (NM_022479, intron 9 of 10) -379768 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 194.5-11 chr11 25490991 25491140 + 2 NA Intergenic L1PREC2|LINE|L1 -698058 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 282-4 chr1 206859283 206859603 + 2 NA Intergenic Intergenic -6366 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 255.25-19 chr3 162997245 162997453 + 2 NA Intergenic MER65-int|LTR|ERV1 305952 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 347-9 chr8 111294999 111295386 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -58989 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 399.25-3 chr13 70099576 70099857 + 2 NA intron (NM_020866, intron 1 of 10) intron (NM_020866, intron 1 of 10) -7497 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 229-11 chr14 49114279 49114467 + 2 NA Intergenic Intergenic 472007 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 147.75-50 chr3 109676822 109677048 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 74107 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 293.5-14 chr2 194660608 194660831 + 2 NA Intergenic Intergenic -69876 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 211.25-38 chr8 83049563 83049740 + 2 NA Intergenic L1ME3D|LINE|L1 137547 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 406-3 chr17 79775762 79776153 + 2 NA Intergenic Intergenic -2191 NM_005189 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 305.25-11 chr3 42062236 42062443 + 2 NA Intergenic Intergenic -24861 NM_001349245 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 297-24 chr7 53976314 53976530 + 2 NA Intergenic AluJo|SINE|Alu -164491 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 256-25 chr6 137850917 137851141 + 2 NA intron (NR_049793, intron 3 of 3) MIR|SINE|MIR -16230 NM_006290 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 252-14 chr2 57939107 57939247 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 31526 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 316.5-3 chr13 108397896 108398069 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 128353 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 224.75-20 chr7 10461879 10462070 + 2 NA intron (NR_147499, intron 2 of 2) Tigger3|DNA|TcMar-Tigger -240702 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 285.5-8 chr2 35578292 35578489 + 2 NA Intergenic Intergenic 106985 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 321-6 chr2 119539070 119539368 + 2 NA Intergenic L1ME4b|LINE|L1 -5213 NR_073133 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 269.75-12 chr3 80645270 80645457 + 2 NA Intergenic L1ME4b|LINE|L1 -119534 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 329-2 chr13 71583031 71583427 + 2 NA intron (NM_001366712, intron 3 of 11) intron (NM_001366712, intron 3 of 11) 283963 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 270.5-30 chr9 107875843 107875994 + 2 NA Intergenic Intergenic -386149 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 168-57 chr6 51310766 51310910 + 2 NA Intergenic Intergenic -311032 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 225.25-11 chr2 99080467 99080638 + 2 NA intron (NR_146001, intron 10 of 18) L2|LINE|L2 60628 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 323.5-13 chr7 132916301 132916530 + 2 NA intron (NM_001317177, intron 4 of 8) intron (NM_001317177, intron 4 of 8) 118500 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 162.5-82 chr7 11964022 11964211 + 2 NA Intergenic LTR39-int|LTR|ERV1 -131918 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 241-39 chrX 76754500 76754669 + 2 NA intron (NR_110400, intron 1 of 3) intron (NR_110400, intron 1 of 3) 164776 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 279.75-11 chr20 41881373 41881564 + 2 NA Intergenic Intergenic -263091 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 290-16 chr6 130167991 130168261 + 2 NA intron (NM_001277185, intron 7 of 10) intron (NM_001277185, intron 7 of 10) 47759 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 180.5-35 chr2 21332719 21332881 + 2 NA Intergenic Intergenic 208814 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 357.5-4 chr2 51965866 51966191 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -404620 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 148.5-108 chr8 83653907 83654037 + 2 NA Intergenic Intergenic 250214 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 261.5-7 chr14 60138534 60138689 + 2 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 26787 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 266.25-17 chr4 30342345 30342549 + 2 NA Intergenic Intergenic -377922 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 430.5-2 chr4 92050641 92050960 + 2 NA Intergenic L1MA1|LINE|L1 226502 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 231.25-35 chr6 119983363 119983571 + 2 NA Intergenic L1MB8|LINE|L1 -31712 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 460-2 chr18 6849912 6850303 + 2 NA intron (NM_001010000, intron 2 of 16) HAL1ME|LINE|L1 15622 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 358.25 chr1 210136725 210136965 + 2 NA intron (NM_153262, intron 6 of 7) L2|LINE|L2 -95951 NM_019605 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 243.25-7 chr2 163262288 163262464 + 2 NA Intergenic Intergenic -423609 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 265.25-27 chr9 26857932 26858168 + 2 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 34752 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 152-24 chr14 64367479 64367595 + 2 NA Intergenic AluJo|SINE|Alu -19926 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 212.75-22 chr3 39326227 39326390 + 2 NA Intergenic Intergenic -3401 NM_005201 1237 Hs.113222 NM_005201 ENSG00000179934 CCR8 CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 C-C motif chemokine receptor 8 protein-coding 447.75 chr14 63190324 63190703 + 2 NA Intergenic L2a|LINE|L2 -13930 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 238.75 chr11 101616122 101616329 + 2 NA Intergenic Intergenic -32218 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 169.5-49 chr22 49020484 49020600 + 2 NA Intergenic Intergenic 153772 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 227-9 chr12 15000899 15001098 + 2 NA promoter-TSS (NR_120466) promoter-TSS (NR_120466) -835 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 245-26 chr4 61674673 61674897 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 472613 NM_001371342 342-4 chr14 27071193 27071442 + 2 NA Intergenic L3|LINE|CR1 162675 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 353.25-3 chr14 46936519 46936767 + 2 NA intron (NM_001113498, intron 9 of 16) L1MA5A|LINE|L1 -284862 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 416-2 chr12 73389545 73389876 + 2 NA Intergenic Intergenic 230520 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 447.5-3 chr3 76958998 76959351 + 2 NA Intergenic Intergenic -80925 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 399.25-4 chr18 21261936 21262195 + 2 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 19823 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 204.5-69 chr9 29840234 29840394 + 2 NA Intergenic Intergenic 568140 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 204.25-5 chr10 57114071 57114224 + 2 NA Intergenic Intergenic 190412 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 208.75-10 chr13 73311199 73311333 + 2 NA Intergenic Intergenic 252261 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 390.5-5 chr5 130884746 130885059 + 2 NA Intergenic LTR16A2|LTR|ERVL 280354 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 255.5-23 chr4 43813049 43813259 + 2 NA Intergenic Intergenic -203707 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 353 chr1 205621926 205622151 + 2 NA intron (NM_021795, intron 2 of 2) AluSx|SINE|Alu 10834 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 396.25-3 chr12 16948251 16948591 + 2 NA Intergenic Intergenic -40326 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 311.25-10 chr6 62194001 62194411 + 2 NA intron (NR_146874, intron 1 of 13) L1M4|LINE|L1 92019 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 260.5-8 chr14 48836264 48836496 + 2 NA Intergenic Intergenic 750000 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 216.75-20 chr2 7667879 7668061 + 2 NA Intergenic Intergenic 231685 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 281.5-21 chr9 22355369 22355692 + 2 NA Intergenic Intergenic -91294 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 355-7 chr3 103656416 103656703 + 2 NA Intergenic Intergenic -132443 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 186 chr1 14925451 14925631 + 2 NA intron (NM_001370229, intron 1 of 7) MIRb|SINE|MIR 1412 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 302.5-2 chr10 61624065 61624394 + 2 NA Intergenic Intergenic -38700 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 206.25-38 chr7 34081748 34081892 + 2 NA intron (NM_133468, intron 13 of 15) intron (NM_133468, intron 13 of 15) 176281 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 288-11 chr2 201128283 201128462 + 2 NA promoter-TSS (NM_001308042) promoter-TSS (NM_001308042) -593 NM_001308042 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP CASP8 and FADD like apoptosis regulator protein-coding 158.5-8 chr1 208376986 208377092 + 2 NA Intergenic MIR|SINE|MIR -132655 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 143.25-38 chr2 193283446 193283629 + 2 NA Intergenic Intergenic 533692 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 305-6 chr12 19452266 19452441 + 2 NA intron (NM_001267043, intron 1 of 8) intron (NM_001267043, intron 1 of 8) 11754 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 239-26 chr5 23671138 23671363 + 2 NA Intergenic Intergenic 163595 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 161.25-41 chr2 72507747 72507841 + 2 NA intron (NR_135774, intron 11 of 19) intron (NR_135774, intron 11 of 19) 318239 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 274.5-35 chr7 77996258 77996540 + 2 NA Intergenic Intergenic 156269 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 386.5-4 chr20 6491074 6491424 + 2 NA intron (NR_109953, intron 3 of 3) MER5A|DNA|hAT-Charlie 64517 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 235-26 chr2 175217178 175217358 + 2 NA Intergenic L1MB8|LINE|L1 -35558 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 448.5-2 chr5 111940632 111941063 + 2 NA intron (NR_046678, intron 2 of 3) MER77B|LTR|ERVL 28339 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 247-29 chr6 88681661 88681840 + 2 NA intron (NM_001286428, intron 11 of 13) intron (NM_001286428, intron 11 of 13) -142381 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 415.5-2 chr12 78328751 78329037 + 2 NA intron (NR_135021, intron 1 of 1) intron (NR_135021, intron 1 of 1) 30852 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 441.75-3 chr8 111108057 111108366 + 2 NA intron (NR_125418, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat -80778 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 340.75-6 chr2 123196102 123196323 + 2 NA Intergenic Intergenic -122731 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 359.5-6 chr16 78055018 78055317 + 2 NA Intergenic Intergenic 32619 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 300-16 chr4 56369708 56370109 + 2 NA intron (NM_001286672, intron 5 of 10) AluSz6|SINE|Alu 17583 NM_001323892 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 216-29 chr4 45651163 45651364 + 2 NA Intergenic Intergenic 472791 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 396 chr12 118715122 118715373 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 46432 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 410.25 chr10 62199379 62199644 + 2 NA intron (NM_145307, intron 11 of 11) intron (NM_145307, intron 11 of 11) 69333 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 223-18 chr17 70859634 70859753 + 2 NA Intergenic Intergenic 342486 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 234-21 chr17 20769495 20769724 + 2 NA Intergenic MER117|DNA|hAT-Charlie 57163 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase B1 pseudogene pseudo 170.25-21 chr14 61232927 61233060 + 2 NA Intergenic Intergenic 48345 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 199.75-17 chr19 53838243 53838354 + 2 NA Intergenic L1PB1|LINE|L1 -13895 NM_001277126 91662 Hs.631573 NM_033297 ENSG00000142405 NLRP12 CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2 NLR family pyrin domain containing 12 protein-coding 251.25-22 chr4 40511949 40512184 + 2 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 2515 NM_001371113 316.75-4 chr2 228922895 228923094 + 2 NA Intergenic L2c|LINE|L2 309098 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 284.5-13 chr14 69193355 69193534 + 2 NA intron (NM_001193363, intron 1 of 8) L1ME3G|LINE|L1 1678 NR_034165 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 331-10 chr3 31573584 31573853 + 2 NA intron (NM_178862, intron 1 of 15) L2b|LINE|L2 40793 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 252-5 chr12 73973385 73973535 + 2 NA Intergenic Intergenic 319171 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 233.5-53 chr8 73581687 73581868 + 2 NA intron (NM_001164384, intron 10 of 10) intron (NM_001164384, intron 10 of 10) 161703 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 266-11 chr2 57533097 57533351 + 2 NA Intergenic L1MC5a|LINE|L1 -374427 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 228-4 chr10 92621756 92621980 + 2 NA intron (NM_004523, intron 10 of 21) intron (NM_004523, intron 10 of 21) 28738 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 232-11 chr18 21819240 21819401 + 2 NA intron (NM_020774, intron 11 of 20) AluJr4|SINE|Alu 6465 NR_029675 406922 NR_029675 ENSG00000283927 MIR133A1 MIRN133A1|mir-133a-1 microRNA 133a-1 ncRNA 201.5-6 chr1 220742898 220743073 + 2 NA Intergenic L1MA2|LINE|L1 -5337 NM_001317338 54996 Hs.369042 NM_017898 ENSG00000117791 MARC2 MOSC2 mitochondrial amidoxime reducing component 2 protein-coding 321.75-4 chr13 86661147 86661395 + 2 NA Intergenic Intergenic -250649 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 135.5-54 chr2 120902866 120902968 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 110636 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 298.75-10 chr7 122030619 122030859 + 2 NA intron (NM_001206839, intron 14 of 28) intron (NM_001206839, intron 14 of 28) 113510 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 262.5 chr1 33666035 33666311 + 2 NA intron (NM_052896, intron 25 of 69) intron (NM_052896, intron 25 of 69) 193528 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 219.75-14 chr17 61617505 61617685 + 2 NA Intergenic Intergenic -26376 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 202.5-20 chr2 186679896 186680086 + 2 NA 3' UTR (NM_001144999, exon 30 of 30) 3' UTR (NM_001144999, exon 30 of 30) -14069 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 411.75 chr1 75937051 75937375 + 2 NA Intergenic Intergenic -4809 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 263.25-8 chr22 25786332 25786590 + 2 NA intron (NM_001318245, intron 11 of 43) L1MD|LINE|L1 44273 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 356 chr1 224321002 224321319 + 2 NA intron (NM_206840, intron 1 of 21) AluJb|SINE|Alu 9012 NM_002533 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 324.75-3 chr11 96943879 96944161 + 2 NA Intergenic L1MA4|LINE|L1 435595 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 193-4 chr1 219979236 219979379 + 2 NA intron (NM_004446, intron 27 of 31) intron (NM_004446, intron 27 of 31) -50656 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 376.5-5 chr4 46089179 46089600 + 2 NA intron (NM_173536, intron 2 of 8) LTR78B|LTR|ERV1 34665 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 381-5 chr22 25682455 25682729 + 2 NA intron (NM_001362778, intron 8 of 19) intron (NM_001362778, intron 8 of 19) -59596 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 262-10 chr11 11073072 11073251 + 2 NA Intergenic Intergenic 214944 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 247-19 chr3 116678587 116678741 + 2 NA Intergenic LTR1E|LTR|ERV1 -31124 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 441.75 chr13 112699680 112699941 + 2 NA intron (NM_032189, intron 1 of 28) MIRc|SINE|MIR 9481 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 172.5-17 chr15 73828090 73828211 + 2 NA Intergenic Intergenic -45414 NM_001286434 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 171.5-76 chr6 63065455 63065547 + 2 NA Intergenic MIRb|SINE|MIR 254476 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 339-3 chr15 78071266 78071475 + 2 NA intron (NM_144572, intron 1 of 12) Cheshire|DNA|hAT-Charlie 6282 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 168-58 chr6 65653847 65654007 + 2 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 53298 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 359-5 chr2 147855958 147856244 + 2 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 11072 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 332-11 chr7 144529032 144529205 + 2 NA intron (NM_001042482, intron 7 of 7) MIRc|SINE|MIR -118891 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 243-5 chr10 19699397 19699537 + 2 NA intron (NM_001142308, intron 38 of 39) intron (NM_001142308, intron 38 of 39) 29083 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 253-15 chr20 57013634 57013791 + 2 NA Intergenic Intergenic -199984 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 530 chr14 50739409 50739716 + 2 NA intron (NM_016350, intron 24 of 28) intron (NM_016350, intron 24 of 28) -71256 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 351-5 chr20 55556412 55556689 + 2 NA Intergenic MIR|SINE|MIR -129353 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 184.75-42 chr4 42424377 42424476 + 2 NA intron (NM_001105529, intron 32 of 35) intron (NM_001105529, intron 32 of 35) 26938 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 320.5-20 chrX 9621764 9621986 + 2 NA intron (NM_001139468, intron 3 of 17) intron (NM_001139468, intron 3 of 17) 143972 NM_000273 4935 Hs.74124 NM_000273 ENSG00000101850 GPR143 NYS6|OA1 G protein-coupled receptor 143 protein-coding 346.25-2 chr3 143844053 143844284 + 2 NA intron (NM_173653, intron 1 of 15) intron (NM_173653, intron 1 of 15) 4300 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 241-33 chr7 82835214 82835429 + 2 NA intron (NM_033026, intron 16 of 24) intron (NM_033026, intron 16 of 24) 327563 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 257.5-16 chr20 35425699 35426068 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -7146 NR_161326 554250 Hs.711481 NM_001350519 ENSG00000204183 GDF5OS - growth differentiation factor 5 opposite strand ncRNA 292.25-7 chr2 161584223 161584576 + 2 NA Intergenic L1ME4a|LINE|L1 -39936 NM_001354450 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 339.5-5 chr18 2558920 2559229 + 2 NA intron (NM_022840, intron 3 of 8) L1MB3|LINE|L1 12431 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 348-3 chr18 5148806 5149101 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 48304 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 189-57 chrX 66908831 66908961 + 2 NA Intergenic Intergenic -269598 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 214.75-34 chr6 129762501 129762669 + 2 NA Intergenic Intergenic -52408 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 177-35 chr21 14611724 14611894 + 2 NA intron (NM_001256579, intron 3 of 6) intron (NM_001256579, intron 3 of 6) -28407 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 309-16 chr5 83645810 83646079 + 2 NA intron (NM_001884, intron 3 of 4) intron (NM_001884, intron 3 of 4) 74911 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 307.5-6 chr21 26928479 26928740 + 2 NA intron (NM_007038, intron 7 of 7) (TTCC)n|Simple_repeat|Simple_repeat -25352 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 237-36 chr7 92978840 92979025 + 2 NA Intergenic L1M4|LINE|L1 139047 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 191.5-48 chr4 90377583 90377807 + 2 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 142664 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 323-2 chr1 221367872 221368109 + 2 NA Intergenic L1MDa|LINE|L1 -31694 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 303.5-4 chr11 102305631 102305843 + 2 NA Intergenic L2a|LINE|L2 -11747 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 358-8 chr5 67743304 67743524 + 2 NA Intergenic Intergenic -49799 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 277.25-20 chr3 112599957 112600146 + 2 NA non-coding (NR_109779, exon 1 of 1) non-coding (NR_109779, exon 1 of 1) 1918 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 454.5-2 chr2 116387625 116388076 + 2 NA Intergenic Intergenic 1044035 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 339.5-3 chr14 26179488 26179689 + 2 NA Intergenic Intergenic 373842 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 144.5-89 chr5 95648397 95648565 + 2 NA intron (NM_001131065, intron 1 of 5) intron (NM_001131065, intron 1 of 5) 1602 NM_001131065 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 142-49 chr4 72844033 72844166 + 2 NA Intergenic Intergenic 225617 NM_173827 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 196.25-28 chr2 13984955 13985093 + 2 NA Intergenic Intergenic 415934 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 386.25-6 chr8 137172968 137173327 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 240441 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 314-17 chr7 86801454 86801708 + 2 NA intron (NM_001363522, intron 3 of 4) L2c|LINE|L2 157667 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 243-18 chr4 57274068 57274215 + 2 NA Intergenic Intergenic -151731 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 339.75-3 chr11 80715038 80715215 + 2 NA Intergenic MIRb|SINE|MIR 47677 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 369-4 chr15 68649147 68649393 + 2 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 7767 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 358-3 chr20 11398309 11398646 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -125094 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 274-29 chr9 29617656 29617910 + 2 NA Intergenic Intergenic -404182 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 215.25-34 chr6 116483787 116483972 + 2 NA Intergenic Intergenic 22504 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 227.5-2 chr1 45202792 45202938 + 2 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 3740 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 308.5-14 chr7 48377861 48378031 + 2 NA intron (NM_152701, intron 35 of 61) intron (NM_152701, intron 35 of 61) 206488 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 115-18 chr11 24059056 24059123 + 2 NA Intergenic Intergenic -437964 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 373.5-5 chr21 37196560 37196870 + 2 NA intron (NM_003316, intron 42 of 45) intron (NM_003316, intron 42 of 45) -2789 NR_046651 100874006 Hs.570411 NR_046651 ENSG00000228677 TTC3-AS1 - TTC3 antisense RNA 1 ncRNA 282-17 chr21 28927007 28927224 + 2 NA Intergenic Intergenic -41742 NM_182749 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 179-57 chr8 62220917 62221030 + 2 NA Intergenic L1MA9|LINE|L1 -27881 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 259.25-3 chr11 69727488 69727720 + 2 NA Intergenic Intergenic -23582 NM_005117 9965 Hs.249200 NM_005117 ENSG00000162344 FGF19 - fibroblast growth factor 19 protein-coding 332-2 chr13 70279987 70280226 + 2 NA Intergenic L1MC2|LINE|L1 -171613 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 201.5-13 chr13 40589470 40589608 + 2 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 77102 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 145-67 chr8 105762459 105762548 + 2 NA intron (NM_001362837, intron 5 of 7) MER130|DNA|DNA 298000 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 219-38 chr8 93256496 93256647 + 2 NA Intergenic L1MA4|LINE|L1 -89721 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 212.5-39 chr4 56660917 56661050 + 2 NA intron (NM_032495, intron 1 of 3) FRAM|SINE|Alu -4461 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 301.5 chr1 73543093 73543259 + 2 NA Intergenic Intergenic -131503 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 330-8 chr4 76062869 76063059 + 2 NA intron (NM_001130017, intron 1 of 9) L2a|LINE|L2 -11731 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 228-41 chr7 13115391 13115528 + 2 NA Intergenic Intergenic 427826 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 453.5 chr3 152545160 152545525 + 2 NA Intergenic L1PB4|LINE|L1 -204352 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 311-9 chr2 150290027 150290249 + 2 NA Intergenic L1M5|LINE|L1 -33131 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 272-6 chr12 94858750 94858985 + 2 NA Intergenic Intergenic 24413 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 359.5-10 chr7 110647538 110647909 + 2 NA Intergenic Intergenic -443283 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 311.5-2 chr1 189679880 189680116 + 2 NA Intergenic Intergenic 796012 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 322.5-23 chr6 9392681 9393069 + 2 NA Intergenic Intergenic 740666 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 380-6 chr7 33105303 33105566 + 2 NA intron (NM_203288, intron 1 of 5) MER39|LTR|ERV1 3970 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 228-25 chr22 16352765 16352909 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat 239973 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 398 chr17 70007831 70008105 + 2 NA Intergenic L1ME3Cz|LINE|L1 -43303 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 225.5-44 chr6 36920358 36920619 + 2 NA intron (NM_152734, intron 7 of 7) intron (NM_152734, intron 7 of 7) -27775 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 365.75-4 chr5 113694332 113694539 + 2 NA Intergenic Intergenic 180741 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 246-32 chr8 25265742 25265874 + 2 NA intron (NM_024940, intron 2 of 51) intron (NM_024940, intron 2 of 51) -79594 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 187.5-2 chr1 45891053 45891187 + 2 NA intron (NM_001324320, intron 4 of 29) LTR37A|LTR|ERV1 26772 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 318.5-16 chr6 10175315 10175636 + 2 NA Intergenic Intergenic -229027 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 262-5 chr1 178733961 178734230 + 2 NA intron (NM_152663, intron 1 of 19) L1MB8|LINE|L1 8851 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 211-22 chr3 47974576 47974734 + 2 NA 3' UTR (NM_030885, exon 4 of 4) 3' UTR (NM_030885, exon 4 of 4) 114193 NM_001134364 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 227-17 chr2 64770402 64770543 + 2 NA Intergenic MIRb|SINE|MIR 93159 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 438-4 chr21 29447629 29447998 + 2 NA Intergenic Intergenic -48234 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 409-3 chr18 27291428 27291879 + 2 NA Intergenic Intergenic 51003 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 185.75-29 chr2 61052001 61052185 + 2 NA TTS (NM_002618) TTS (NM_002618) -13777 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 223.5-26 chr14 64676507 64676679 + 2 NA Intergenic Intergenic -27831 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 259-18 chr2 216060712 216060955 + 2 NA intron (NM_018441, intron 3 of 7) L1MC4|LINE|L1 20976 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 351.75-3 chr4 55534412 55534891 + 2 NA intron (NM_004898, intron 1 of 22) L2a|LINE|L2 11281 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 245.5-16 chr20 12988980 12989197 + 2 NA Intergenic Intergenic -19884 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 211-31 chr7 83943585 83943732 + 2 NA Intergenic Intergenic 251131 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 428 chr2 98655931 98656208 + 2 NA intron (NM_001160154, intron 4 of 12) intron (NM_001160154, intron 4 of 12) 7404 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 348-11 chr6 44395789 44396032 + 2 NA intron (NM_001253, intron 4 of 15) intron (NM_001253, intron 4 of 15) 8204 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 381.5 chr1 199469298 199469630 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 320866 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 224.5-30 chr4 103275709 103275839 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -77431 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 310-17 chr5 25852738 25852948 + 2 NA Intergenic MER65-int|LTR|ERV1 661890 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 338.75-6 chr7 39138115 39138319 + 2 NA intron (NM_001370959, intron 2 of 9) MIRb|SINE|MIR -124650 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 347.5-13 chr5 65387978 65388437 + 2 NA intron (NR_135689, intron 7 of 25) AluSx1|SINE|Alu 93713 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 253.5-45 chr8 136096188 136096336 + 2 NA Intergenic L1MEf|LINE|L1 -434536 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 250.5-22 chr3 4850924 4851157 + 2 NA Intergenic Intergenic 55461 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 301-21 chr7 3575664 3575817 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 274488 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 316.25-9 chr8 109608838 109609058 + 2 NA promoter-TSS (NM_001330596) promoter-TSS (NM_001330596) -886 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 364.75-2 chr7 27534236 27534588 + 2 NA intron (NM_152740, intron 6 of 7) intron (NM_152740, intron 6 of 7) -81562 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 145-55 chr5 143080769 143080878 + 2 NA intron (NR_146198, intron 17 of 22) L2a|LINE|L2 -111677 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 426.5 chr12 130158887 130159230 + 2 NA intron (NR_033834, intron 1 of 3) intron (NR_033834, intron 1 of 3) 2620 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 FZD10-DT FZD10 antisense divergent transcript ncRNA 238-17 chr17 27414047 27414502 + 2 NA Intergenic Intergenic -3731 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 287.5-20 chr3 57908433 57908620 + 2 NA intron (NM_001304420, intron 16 of 21) intron (NM_001304420, intron 16 of 21) 18524 NM_001304423 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 269.5-15 chr17 13850912 13851105 + 2 NA Intergenic L1MEi|LINE|L1 -173490 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 289.5-25 chrX 112756445 112756605 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 24263 NR_036255 100423009 NR_036255 ENSG00000283775 MIR4329 - microRNA 4329 ncRNA 401.5-3 chr5 63251646 63251899 + 2 NA Intergenic Intergenic 672953 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 302.25-13 chr8 31296028 31296442 + 2 NA Intergenic Intergenic -262879 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 308.5 chr10 48405525 48405770 + 2 NA intron (NM_001323302, intron 5 of 13) intron (NM_001323302, intron 5 of 13) 4035 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 578.25 chr8 119929664 119930211 + 2 NA exon (NM_022783, exon 3 of 9) exon (NM_022783, exon 3 of 9) 56215 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 208.5-23 chr14 77351756 77351970 + 2 NA intron (NM_001346133, intron 1 of 5) intron (NM_001346133, intron 1 of 5) 22046 NM_001346134 283578 Hs.26403 NM_213601 ENSG00000100580 TMED8 FAM15B transmembrane p24 trafficking protein family member 8 protein-coding 281-22 chr6 141070870 141071088 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 387165 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 295-14 chr6 155439366 155439547 + 2 NA intron (NM_015718, intron 6 of 13) MIR3|SINE|MIR 16383 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 322-2 chr11 45814477 45814667 + 2 NA Intergenic AluJr|SINE|Alu 9482 NM_018389 55343 Hs.12211 NM_018389 ENSG00000181830 SLC35C1 CDG2C|FUCT1 solute carrier family 35 member C1 protein-coding 252-10 chr15 85101669 85101851 + 2 NA intron (NM_001243137, intron 11 of 21) intron (NM_001243137, intron 11 of 21) 119786 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 285-8 chr11 132557130 132557427 + 2 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 272976 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 232.5-20 chr2 147370708 147370839 + 2 NA Intergenic L1MA4|LINE|L1 -473744 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 351.5-5 chr3 182905040 182905283 + 2 NA intron (NM_014616, intron 28 of 29) intron (NM_014616, intron 28 of 29) 75377 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 190.75-42 chr5 85515656 85515821 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -766706 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 207.5-27 chr2 56537891 56538099 + 2 NA Intergenic Intergenic -352225 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 333.25-4 chr3 58061297 58061608 + 2 NA intron (NM_001164318, intron 1 of 45) AluJb|SINE|Alu 53030 NM_001457 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 196.5-7 chr1 95729909 95730162 + 2 NA Intergenic Intergenic 219919 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 391-3 chr2 47879721 47880000 + 2 NA intron (NM_001190274, intron 1 of 22) L1MB1|LINE|L1 8859 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 386.5-2 chr10 69711362 69711751 + 2 NA Intergenic MIRb|SINE|MIR 81309 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 181.75-36 chr6 64502649 64502843 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 695910 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 428-2 chr8 65852660 65852991 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -10761 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 303.5-21 chr8 124639977 124640280 + 2 NA intron (NM_001282971, intron 3 of 14) MIR|SINE|MIR 88345 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 205-15 chr14 34117064 34117220 + 2 NA Intergenic Intergenic -166068 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 259.5-4 chr10 27855215 27855353 + 2 NA intron (NM_001290021, intron 12 of 13) intron (NM_001290021, intron 12 of 13) -109465 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 360.5-2 chr12 132111196 132111458 + 2 NA intron (NR_003290, intron 4 of 9) AluSz6|SINE|Alu 27044 NR_003290 347918 Hs.122115 NM_182613 ENSG00000185684 EP400P1 EP400NL EP400 pseudogene 1 pseudo 159-51 chr5 27539527 27539675 + 2 NA Intergenic L1MC3|LINE|L1 67309 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 383.5-4 chr12 82351078 82351370 + 2 NA Intergenic Intergenic 7163 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 272-20 chr4 105536361 105536587 + 2 NA Intergenic Intergenic -16146 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 387.5-3 chr12 116076750 116076978 + 2 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 71790 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 213-42 chr7 43254359 43254545 + 2 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 103557 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 389 chr12 9830427 9830670 + 2 NA intron (NR_120305, intron 1 of 3) L1MC|LINE|L1 3067 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 225.75-12 chr19 37196617 37196827 + 2 NA intron (NM_152279, intron 2 of 4) Tigger2|DNA|TcMar-Tigger 13814 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 212.5-4 chr10 52585384 52585530 + 2 NA intron (NR_155748, intron 1 of 2) L1MA3|LINE|L1 -114924 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 435.5 chr5 149118376 149118672 + 2 NA Intergenic Intergenic -22923 NM_001345859 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 269-13 chr3 179786661 179786943 + 2 NA 3' UTR (NM_003940, exon 21 of 21) 3' UTR (NM_003940, exon 21 of 21) -111392 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 503 chr2 88339565 88339929 + 2 NA Intergenic Intergenic 112946 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 206-6 chr10 128037566 128037686 + 2 NA intron (NM_001323354, intron 1 of 19) intron (NM_001323354, intron 1 of 19) -9986 NM_130435 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 285.5-17 chr7 36407638 36407917 + 2 NA exon (NM_001284301, exon 5 of 23) exon (NM_001284301, exon 5 of 23) -17420 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 211-35 chr8 46519300 46519558 + 2 NA Intergenic ALR/Alpha|Satellite|centr 98214 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 337-2 chr11 13860481 13860782 + 2 NA intron (NR_149109, intron 3 of 3) intron (NR_149109, intron 3 of 3) 9985 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 177.75-31 chr21 39647906 39648053 + 2 NA intron (NM_001356336, intron 2 of 3) intron (NM_001356336, intron 2 of 3) 5583 NM_001356339 10317 Hs.733638 NM_006057 ENSG00000183778 B3GALT5 B3GalT-V|B3GalTx|B3T5|GLCT5|beta-1,3-GalTase 5|beta-3-Gx-T5|beta3Gal-T5 beta-1,3-galactosyltransferase 5 protein-coding 133.5-70 chr3 175607340 175607431 + 2 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 168948 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 378.25-4 chr8 82032841 82033091 + 2 NA Intergenic Intergenic -190680 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 339.75-4 chr13 46574104 46574366 + 2 NA intron (NM_001164213, intron 1 of 18) L1MA2|LINE|L1 21065 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 321-2 chr1 150641213 150641441 + 2 NA Intergenic Intergenic -11705 NM_207044 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 397.25 chr12 95499770 95499996 + 2 NA intron (NM_006838, intron 7 of 10) THE1D|LTR|ERVL-MaLR 25731 NR_133673 10988 Hs.444986 NM_006838 ENSG00000111142 METAP2 MAP2|MNPEP|p67eIF2 methionyl aminopeptidase 2 protein-coding 145.5-77 chr5 111096013 111096134 + 2 NA intron (NM_139281, intron 2 of 22) intron (NM_139281, intron 2 of 22) 3901 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 407.5 chr1 210089852 210090095 + 2 NA intron (NM_153262, intron 4 of 7) MER51A|LTR|ERV1 -142823 NM_019605 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 367-3 chr6 156224959 156225190 + 2 NA Intergenic L1MA2|LINE|L1 -153676 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 356-2 chr11 77827700 77827951 + 2 NA intron (NR_133637, intron 1 of 4) L1M4|LINE|L1 6711 NM_024684 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 225.5-42 chr5 104694159 104694389 + 2 NA Intergenic Intergenic -405200 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 300.25-13 chr8 83302422 83302658 + 2 NA Intergenic L1MD2|LINE|L1 -101218 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 285-7 chr11 19628305 19628528 + 2 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 53106 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 240.25-21 chr3 192729009 192729195 + 2 NA Intergenic Intergenic -1561 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 156.75-14 chr10 115027808 115027952 + 2 NA Intergenic Intergenic 33223 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 183-8 chr10 29373271 29373405 + 2 NA Intergenic Intergenic -36196 NR_110922 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 307.5-11 chr5 57346027 57346207 + 2 NA Intergenic Intergenic 132043 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 189.5-3 chr1 184870044 184870203 + 2 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) 104385 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 167.5-84 chr8 72812541 72812683 + 2 NA intron (NM_004770, intron 2 of 2) L1M5|LINE|L1 80567 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 216.5-44 chr8 129484582 129484761 + 2 NA promoter-TSS (NR_037457) promoter-TSS (NR_037457) -529 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 284.25-27 chr8 123739212 123739447 + 2 NA Intergenic L1P1|LINE|L1 -1936 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 164.5-96 chr8 125629854 125629953 + 2 NA Intergenic L1MA6|LINE|L1 197694 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 280-4 chr1 114313635 114313880 + 2 NA Intergenic Intergenic -159888 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 336.25 chr1 21087305 21087538 + 2 NA intron (NM_003760, intron 1 of 31) AluJb|SINE|Alu 23962 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 336-12 chr3 98342407 98342602 + 2 NA Intergenic L1M3d|LINE|L1 -11350 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 266.5-26 chr9 101636384 101636588 + 2 NA intron (NM_133445, intron 3 of 8) MIR|SINE|MIR -41517 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 440.5-2 chr17 60840074 60840444 + 2 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 162408 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 308.75-6 chr21 14589388 14589672 + 2 NA intron (NR_046512, intron 2 of 4) intron (NR_046512, intron 2 of 4) -6128 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 269.5-18 chr4 28259831 28260277 + 2 NA Intergenic Intergenic -559528 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 240-19 chr4 108452893 108453033 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -104270 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 187.25-32 chr2 193403811 193404096 + 2 NA Intergenic Intergenic 654108 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 416-3 chr8 71540934 71541259 + 2 NA intron (NM_001370336, intron 1 of 17) intron (NM_001370336, intron 1 of 17) 6608 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 387.25-3 chr18 7214486 7214839 + 2 NA Intergenic Intergenic -16442 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 236.75-18 chr5 25487511 25487686 + 2 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 296645 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 178.25-48 chr5 22819109 22819247 + 2 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 34166 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 183.5-75 chr7 107271803 107271974 + 2 NA intron (NM_181733, intron 14 of 20) L1MC|LINE|L1 102885 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 380.5-5 chr3 79815655 79815944 + 2 NA Intergenic L1PA15-16|LINE|L1 -47801 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 153-29 chr3 29381702 29381816 + 2 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 100447 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 418.5-2 chr10 124051509 124051740 + 2 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 40782 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 320.25-12 chr6 34841455 34841694 + 2 NA intron (NM_017754, intron 8 of 20) MER3|DNA|hAT-Charlie 46468 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 269-19 chr8 129699162 129699527 + 2 NA Intergenic Intergenic -19105 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 176.75-12 chr14 59506805 59506933 + 2 NA intron (NM_001164399, intron 19 of 19) intron (NM_001164399, intron 19 of 19) 22352 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 185.75-17 chr12 128014818 128014966 + 2 NA Intergenic Intergenic 12274 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 318-23 chr8 69164119 69164445 + 2 NA Intergenic Intergenic -60092 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 296.5-4 chr10 31685095 31685349 + 2 NA Intergenic L2a|LINE|L2 223704 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 578 chr14 82929244 82929756 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 286868 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 223-7 chr10 74925006 74925121 + 2 NA intron (NR_134476, intron 1 of 1) AluSx1|SINE|Alu 12277 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 228.75-9 chr12 13478710 13478844 + 2 NA Intergenic Intergenic -102032 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 304-5 chr2 235613216 235613464 + 2 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -95419 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 169-3 chr1 69706025 69706175 + 2 NA intron (NM_001370785, intron 2 of 26) intron (NM_001370785, intron 2 of 26) 136759 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 291-13 chr6 129460825 129461023 + 2 NA intron (NM_000426, intron 49 of 64) intron (NM_000426, intron 49 of 64) 249253 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 434-2 chr14 51106245 51106593 + 2 NA Intergenic AluJb|SINE|Alu -10715 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 257-8 chr2 8057721 8057993 + 2 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -81043 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 351.5-6 chr5 36487261 36487539 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -118955 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 281-8 chr18 13598029 13598248 + 2 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -12976 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 149.25-16 chr12 6409450 6409581 + 2 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 25353 NM_002342 4055 Hs.1116 NM_002342 ENSG00000111321 LTBR D12S370|LT-BETA-R|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFR3|TNFRSF3 lymphotoxin beta receptor protein-coding 335.25-13 chr6 65503422 65503742 + 2 NA intron (NM_001292009, intron 2 of 43) L1MCa|LINE|L1 76222 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 250-28 chr7 44242206 44242410 + 2 NA exon (NM_001293170, exon 10 of 21) exon (NM_001293170, exon 10 of 21) 41330 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 197.75-24 chr2 207713553 207713654 + 2 NA intron (NM_001330218, intron 1 of 9) intron (NM_001330218, intron 1 of 9) 2063 NM_152523 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 298.75-3 chr17 20012798 20013182 + 2 NA intron (NM_001243439, intron 1 of 14) L1MB2|LINE|L1 3631 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 283.75 chr1 50653064 50653337 + 2 NA intron (NM_007051, intron 8 of 18) intron (NM_007051, intron 8 of 18) -229757 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 323.75-5 chr2 130381025 130381270 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 25091 NM_001142370 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 396-3 chr6 86145848 86146138 + 2 NA Intergenic MIRc|SINE|MIR -467260 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 142.75-92 chr9 80892465 80892555 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 797025 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 234-13 chr12 33181786 33181908 + 2 NA Intergenic Intergenic 257972 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 368-3 chr17 51541576 51541876 + 2 NA Intergenic Intergenic 106299 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 518 chr1 55035154 55035669 + 2 NA Intergenic L1M5|LINE|L1 -4065 NM_174936 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 297.75-4 chr10 81017364 81017714 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 367742 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 195.5-96 chrX 38670006 38670110 + 2 NA intron (NM_004615, intron 2 of 7) intron (NM_004615, intron 2 of 7) 108580 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 219.75-24 chr22 30255154 30255362 + 2 NA Intergenic Intergenic -8499 NM_001257135 3976 Hs.2250 NM_002309 ENSG00000128342 LIF CDF|DIA|HILDA|MLPLI LIF interleukin 6 family cytokine protein-coding 234-38 chr7 117411585 117411746 + 2 NA intron (NM_001301821, intron 4 of 12) intron (NM_001301821, intron 4 of 12) 15828 NM_001301822 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 334.5-2 chr10 6623919 6624276 + 2 NA intron (NR_120634, intron 3 of 5) MER67A|LTR|ERV1 5381 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 369.25-2 chr2 218803926 218804140 + 2 NA intron (NM_000784, intron 1 of 8) L1M4|LINE|L1 -19057 NR_128707 103504730 NR_128707 ENSG00000283639 MIR9500 hsa-mir-9500 microRNA 9500 ncRNA 262-21 chr22 27977092 27977275 + 2 NA TTS (NM_001145418) TTS (NM_001145418) -56571 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 176-34 chr5 40255183 40255314 + 2 NA Intergenic Intergenic 202957 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 359.5-5 chr16 77926416 77926686 + 2 NA intron (NM_020927, intron 7 of 8) AluSx1|SINE|Alu -95997 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 284-2 chr1 190271841 190272086 + 2 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 204047 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 230-19 chr3 88315625 88315952 + 2 NA Intergenic Intergenic -22668 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 412.75-2 chr4 62403428 62403798 + 2 NA Intergenic Intergenic -241848 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 241-38 chrX 72659042 72659162 + 2 NA intron (NM_002637, intron 8 of 31) L1MC4a|LINE|L1 -29847 NR_110391 101928259 Hs.666679 NR_110391 ENSG00000231944 PHKA1-AS1 - PHKA1 antisense RNA 1 ncRNA 386.75 chr14 48149354 48149588 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -354457 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 211.25-16 chr2 14778783 14779053 + 2 NA Intergenic MIRc|SINE|MIR 146201 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 299-10 chr2 71768460 71768706 + 2 NA Intergenic Intergenic 301884 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 372.75-9 chrUn_KI270438v1 103900 104187 + 2 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 225.5-24 chr2 29657697 29657963 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -182453 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 203.5-25 chr2 217566333 217566505 + 2 NA intron (NR_026597, intron 2 of 12) MSTA|LTR|ERVL-MaLR 190174 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 154.5-3 chr1 84092022 84092172 + 2 NA intron (NM_002731, intron 1 of 9) L1ME3|LINE|L1 14018 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 427.25 chr6 44432655 44432885 + 2 NA intron (NM_001253, intron 14 of 15) L3b|LINE|CR1 -2871 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 341.25-10 chr7 30687897 30688202 + 2 NA intron (NM_001202481, intron 2 of 13) MLT1B|LTR|ERVL-MaLR -5524 NM_001202482 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 362.25-8 chr5 170383508 170383850 + 2 NA exon (NM_004137, exon 3 of 4) exon (NM_004137, exon 3 of 4) 5688 NM_004137 3779 Hs.484099 NM_004137 ENSG00000145936 KCNMB1 BKbeta1|K(VCA)beta|SLO-BETA|hbeta1|hslo-beta|k(VCA)beta-1|slo-beta-1 potassium calcium-activated channel subfamily M regulatory beta subunit 1 protein-coding 352-11 chr8 83895416 83895735 + 2 NA Intergenic Intergenic -287212 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 317.5-3 chr1 168674305 168674584 + 2 NA Intergenic Intergenic 54762 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 362.75-2 chr12 79207290 79207561 + 2 NA intron (NM_005639, intron 3 of 10) L1PA10|LINE|L1 161733 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 331.25-12 chr8 118978680 118979091 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 26622 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 170.75-34 chr2 24358944 24359108 + 2 NA intron (NM_001348182, intron 1 of 38) intron (NM_001348182, intron 1 of 38) 1510 NM_001348183 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 328.5-12 chr4 30389810 30390125 + 2 NA Intergenic Intergenic -330402 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 257.5-4 chr10 49462715 49462967 + 2 NA intron (NM_001346440, intron 18 of 20) L1MC4|LINE|L1 61440 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 338.25-2 chr1 210770336 210770547 + 2 NA intron (NM_002238, intron 10 of 10) MIRc|SINE|MIR 362933 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 262-2 chr1 37530703 37530873 + 2 NA Intergenic MER31-int|LTR|ERV1 -16022 NM_001270876 64769 Hs.17118 NM_022756 ENSG00000163875 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1 associated factor 6 protein-coding 245-35 chr7 3468035 3468196 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 166863 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 275.5-28 chr6 63993967 63994304 + 2 NA intron (NM_001292009, intron 34 of 43) intron (NM_001292009, intron 34 of 43) 187299 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 317.25-5 chr12 21358947 21359197 + 2 NA intron (NM_001329201, intron 1 of 2) HAL1|LINE|L1 4112 NM_001329201 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 377.25-4 chr15 25364259 25364450 + 2 NA intron (NM_001354542, intron 5 of 11) intron (NM_001354542, intron 5 of 11) 73875 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 412-6 chrX 108868400 108868780 + 2 NA Intergenic L3|LINE|CR1 132050 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 199.25-11 chr12 117709991 117710196 + 2 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 258897 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 290-8 chr2 13785898 13786084 + 2 NA Intergenic L1M4|LINE|L1 614967 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 200-10 chr12 19277631 19277783 + 2 NA intron (NM_001256787, intron 8 of 25) intron (NM_001256787, intron 8 of 25) 72382 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 317-6 chr2 216336310 216336544 + 2 NA intron (NM_020814, intron 1 of 3) intron (NM_020814, intron 1 of 3) 36056 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 254.75-17 chr3 108794479 108794705 + 2 NA Intergenic L1MA4|LINE|L1 -28194 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 193-50 chr9 25408074 25408261 + 2 NA Intergenic Intergenic 270691 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 168.5-52 chr22 26873378 26873472 + 2 NA intron (NR_146604, intron 3 of 5) L1ME3Cz|LINE|L1 13214 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 163-55 chrX 44621403 44621592 + 2 NA Intergenic Intergenic -78638 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 268-18 chr3 111650573 111650862 + 2 NA 3' UTR (NM_198196, exon 15 of 15) 3' UTR (NM_198196, exon 15 of 15) -23959 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 180-54 chr5 46220684 46220811 + 2 NA Intergenic ALR/Alpha|Satellite|centr -524367 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 181.5-37 chr2 69097125 69097220 + 2 NA intron (NM_032208, intron 9 of 17) intron (NM_032208, intron 9 of 17) -6510 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 287-8 chr2 112181638 112181787 + 2 NA intron (NM_001128165, intron 4 of 6) CpG 43327 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 202-7 chr14 43043644 43043827 + 2 NA Intergenic Intergenic 1436879 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 367.25-3 chr14 55171528 55171762 + 2 NA intron (NM_001146015, intron 10 of 19) L1MB3|LINE|L1 19940 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 258-25 chr4 152173489 152173639 + 2 NA Intergenic Intergenic 72746 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 259.75-12 chr22 28842420 28842562 + 2 NA Intergenic L1MB8|LINE|L1 -41081 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 315 chr1 78350734 78351026 + 2 NA intron (NR_027310, intron 4 of 5) MLT1D|LTR|ERVL-MaLR 121281 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 317.25-4 chr10 35447755 35448211 + 2 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 111109 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 386-4 chr9 98680577 98680839 + 2 NA intron (NM_005458, intron 1 of 18) L1ME4a|LINE|L1 28227 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 444.5-3 chr15 59852060 59852333 + 2 NA Intergenic Intergenic -152115 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 204-32 chr5 32746552 32746702 + 2 NA intron (NM_001364460, intron 2 of 6) intron (NM_001364460, intron 2 of 6) 35306 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 390.5-4 chr5 86260247 86260576 + 2 NA Intergenic Intergenic -22033 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 227-5 chr10 52240554 52240760 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 73471 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 176.25-74 chr9 123049206 123049353 + 2 NA intron (NM_012197, intron 13 of 25) intron (NM_012197, intron 13 of 25) 15636 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 271.25-15 chr9 38443018 38443171 + 2 NA Intergenic Intergenic -18640 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 344.5-10 chr9 81853505 81853865 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -59752 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 290.75-6 chr2 119967537 119967737 + 2 NA intron (NM_002830, intron 25 of 26) intron (NM_002830, intron 25 of 26) -45440 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 259-26 chr4 127953956 127954154 + 2 NA intron (NM_001363520, intron 2 of 9) intron (NM_001363520, intron 2 of 9) 11118 NM_001363521 256471 Hs.480701 NM_152778 ENSG00000164073 MFSD8 CCMD|CLN7 major facilitator superfamily domain containing 8 protein-coding 315.5-7 chr2 199347018 199347225 + 2 NA intron (NM_001172509, intron 7 of 10) AluSz|SINE|Alu 110818 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 261-21 chr19 27672234 27672495 + 2 NA Intergenic HSAT4|Satellite|centr -121067 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 285.5-14 chr5 119157864 119158102 + 2 NA intron (NM_001290321, intron 19 of 43) L1MA7|LINE|L1 3346 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 192-20 chr15 83191351 83191477 + 2 NA intron (NM_016073, intron 1 of 5) L1MB3|LINE|L1 16409 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 228.25-19 chr20 17454376 17454579 + 2 NA intron (NM_002594, intron 9 of 11) intron (NM_002594, intron 9 of 11) 76902 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 178.5-49 chr3 104772405 104772559 + 2 NA Intergenic L1M5|LINE|L1 -594231 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 322.5-12 chr22 45602018 45602337 + 2 NA Intergenic Intergenic 3470 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 248.5-23 chr5 51908513 51908740 + 2 NA Intergenic Intergenic -99405 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 396.5-6 chr5 71714059 71714419 + 2 NA Intergenic Intergenic -5036 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 135.75-22 chr11 114548797 114548895 + 2 NA intron (NM_152315, intron 2 of 5) L1M5|LINE|L1 11035 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 253.5-43 chr7 67533687 67534081 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 197908 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 235.75-12 chr17 62033707 62033912 + 2 NA exon (NM_005121, exon 5 of 30) exon (NM_005121, exon 5 of 30) 31469 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 447-2 chr11 99497913 99498316 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -58031 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 203.25-21 chr16 60070067 60070267 + 2 NA Intergenic Intergenic 214814 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 301.75-5 chr14 32166982 32167320 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -34894 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 269.25-23 chr8 79881930 79882139 + 2 NA Intergenic Intergenic -10297 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 351-3 chr12 16254761 16255112 + 2 NA intron (NM_001170798, intron 3 of 8) L1MA5A|LINE|L1 22749 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 279.5-6 chr2 114274057 114274357 + 2 NA Intergenic Intergenic -168434 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209.5-21 chr20 55111039 55111169 + 2 NA Intergenic L1M5|LINE|L1 -311939 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 195-28 chr2 121475906 121476052 + 2 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -54901 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 215-25 chr2 63672373 63672582 + 2 NA Intergenic Intergenic 83326 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 337.25-8 chr5 39827115 39827342 + 2 NA Intergenic Intergenic -225063 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 376.5 chr10 72535665 72536060 + 2 NA intron (NM_006077, intron 4 of 11) MER33|DNA|hAT-Charlie -11876 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 274.5-9 chr14 87007938 87008130 + 2 NA Intergenic L1MA9|LINE|L1 102256 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 169.75-65 chr8 135886501 135886652 + 2 NA Intergenic MIRb|SINE|MIR 429120 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 211.5-32 chr20 59230761 59230961 + 2 NA intron (NM_178457, intron 3 of 4) MLT1J|LTR|ERVL-MaLR 39841 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 306-2 chr1 72026646 72026920 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -189771 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 474.25 chr4 93954292 93954682 + 2 NA Intergenic L1MB1|LINE|L1 125734 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 338.25-5 chr3 174466480 174466796 + 2 NA Intergenic Intergenic -392696 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 308-10 chr5 106423838 106424111 + 2 NA Intergenic L1MA8|LINE|L1 587040 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 220-9 chr14 60740954 60741183 + 2 NA intron (NM_001177963, intron 1 of 6) L1MEg|LINE|L1 6307 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 216.75-26 chr22 28562122 28562295 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 102339 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 317-9 chr5 116504146 116504413 + 2 NA intron (NM_001300780, intron 2 of 19) intron (NM_001300780, intron 2 of 19) 56781 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 561.75 chr11 65630714 65631160 + 2 NA intron (NM_032223, intron 27 of 34) intron (NM_032223, intron 27 of 34) -5373 NR_039839 100616292 NR_039839 ENSG00000266041 MIR4690 - microRNA 4690 ncRNA 210-29 chr5 81403959 81404135 + 2 NA Intergenic Intergenic -9913 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 245-9 chr12 61905731 61905877 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 287035 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 329-7 chr8 13560655 13560935 + 2 NA intron (NM_001348082, intron 1 of 16) MLT1B|LTR|ERVL-MaLR -6074 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 160.5-22 chr14 91001601 91001700 + 2 NA intron (NM_182398, intron 1 of 12) MIR3|SINE|MIR 58474 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 376.75-3 chr4 60372065 60372377 + 2 NA Intergenic L1ME4b|LINE|L1 -550398 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 257-9 chr2 34164696 34164879 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 97561 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 254.75 chr1 92776196 92776401 + 2 NA intron (NM_001308248, intron 1 of 18) intron (NM_001308248, intron 1 of 18) 8810 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 302 chr1 41297923 41298195 + 2 NA Intergenic L1ME1|LINE|L1 -55753 NM_001172220 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 208.75-25 chr5 130122901 130123138 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 218554 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 281-7 chr16 13653736 13653929 + 2 NA Intergenic Intergenic -266325 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 265-12 chr17 42568618 42568772 + 2 NA intron (NM_198204, intron 3 of 7) intron (NM_198204, intron 3 of 7) 1635 NM_198205 6945 Hs.383019 NM_170607 ENSG00000108788 MLX MAD7|MXD7|TCFL4|TF4|bHLHd13 MAX dimerization protein MLX protein-coding 222-42 chr8 76827192 76827553 + 2 NA intron (NM_024721, intron 4 of 10) MER1B|DNA|hAT-Charlie 139478 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 211.75-6 chr10 94494025 94494135 + 2 NA intron (NM_015188, intron 4 of 12) intron (NM_015188, intron 4 of 12) -51687 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 284.25-26 chr8 100632134 100632438 + 2 NA intron (NM_152628, intron 3 of 13) Tigger11a|DNA|TcMar-Tigger -13881 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 239.75-16 chr2 13464629 13464881 + 2 NA Intergenic L1MC3|LINE|L1 -457742 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 189-36 chr3 96273355 96273497 + 2 NA Intergenic Intergenic -86538 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 296.75-4 chr2 133968429 133968629 + 2 NA Intergenic Intergenic -151406 NM_001371457 268-7 chr12 33606595 33606794 + 2 NA Intergenic Intergenic -166875 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 272.25 chr1 62924131 62924353 + 2 NA Intergenic Intergenic 86683 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 240-27 chr8 138559689 138559962 + 2 NA Intergenic Intergenic -62095 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 193.25-13 chr16 13034570 13034701 + 2 NA intron (NM_001145204, intron 2 of 4) MLT1H|LTR|ERVL-MaLR 133037 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 298.25-13 chr6 38497118 38497358 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 15642 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 285-17 chr5 79060163 79060371 + 2 NA intron (NM_013391, intron 2 of 15) intron (NM_013391, intron 2 of 15) 9407 NR_104003 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 168.75-19 chr19 43671943 43672112 + 2 NA Intergenic Intergenic -1681 NM_001005376 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 235-19 chr18 2214131 2214291 + 2 NA Intergenic L1MEf|LINE|L1 357294 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 246.5-18 chr5 65142786 65142975 + 2 NA Intergenic Intergenic 339040 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 189.5-42 chr4 33961542 33961733 + 2 NA intron (NR_125902, intron 3 of 4) intron (NR_125902, intron 3 of 4) 78256 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 332-14 chr8 117394253 117394524 + 2 NA Intergenic MLT2C1|LTR|ERVL -126325 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 260-2 chr1 189748739 189748888 + 2 NA Intergenic L1MC4|LINE|L1 727197 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 171.25-46 chr5 130514740 130514863 + 2 NA Intergenic Intergenic 610336 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 252.5-27 chr4 44714484 44714695 + 2 NA intron (NR_073095, intron 1 of 3) LTR79|LTR|ERVL 11967 NM_138335 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 549 chr1 86800743 86801069 + 2 NA Intergenic MIR|SINE|MIR 96330 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 202.5-10 chr14 63283131 63283311 + 2 NA intron (NM_020663, intron 4 of 4) intron (NM_020663, intron 4 of 4) 35714 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 270-3 chr10 9199841 9200019 + 2 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -75683 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 225-29 chr5 95791182 95791406 + 2 NA intron (NM_014899, intron 11 of 11) intron (NM_014899, intron 11 of 11) 31432 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 273 chr1 192125869 192126109 + 2 NA Intergenic Intergenic -32473 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 235-15 chr14 75162615 75162771 + 2 NA intron (NM_006827, intron 1 of 4) L1MC3|LINE|L1 13919 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 383.5-9 chr8 79576462 79576754 + 2 NA Intergenic Intergenic -34509 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 311.5-11 chr8 24391356 24391531 + 2 NA intron (NM_001145271, intron 2 of 14) intron (NM_001145271, intron 2 of 14) 7158 NM_014479 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 383.25 chr12 6848635 6848941 + 2 NA TTS (NM_031299) TTS (NM_031299) 3142 NM_001297602 83461 Hs.524216 NM_031299 ENSG00000111665 CDCA3 GRCC8|TOME-1 cell division cycle associated 3 protein-coding 181.5-16 chr14 25411533 25411749 + 2 NA Intergenic MIR|SINE|MIR -361344 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 273-18 chr2 142043074 142043370 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 88479 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 270.5 chr1 67161100 67161397 + 2 NA Intergenic Intergenic -5206 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 206.5-48 chr7 16891443 16891696 + 2 NA Intergenic Intergenic -9586 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 255.5-10 chr17 28839154 28839517 + 2 NA intron (NM_001288636, intron 1 of 5) intron (NM_001288636, intron 1 of 5) 3455 NM_001288636 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 369-12 chr5 51060694 51060918 + 2 NA Intergenic Intergenic -90619 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 366-5 chr15 24980832 24981169 + 2 NA promoter-TSS (NR_001293) promoter-TSS (NR_001293) -994 NR_022011 347746 Hs.733072 NR_022011 PWARSN PAR-SN|PARSN Prader Willi/Angelman region RNA, SNRPN neighbor ncRNA 591.25 chr2 38584627 38585317 + 2 NA intron (NM_138394, intron 3 of 12) intron (NM_138394, intron 3 of 12) 17956 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 432-2 chr5 56669347 56669826 + 2 NA Intergenic Intergenic -63330 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 246-10 chr19 28777804 28777995 + 2 NA Intergenic L1P4a|LINE|L1 -50205 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 326.25-3 chr12 30653939 30654303 + 2 NA intron (NM_006390, intron 17 of 24) L1MA8|LINE|L1 23123 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 273.5 chr1 60345357 60345549 + 2 NA Intergenic Intergenic -271683 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 239-11 chr11 8579408 8579652 + 2 NA intron (NM_001289058, intron 1 of 13) intron (NM_001289058, intron 1 of 13) 14446 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 177.5-44 chr22 17439847 17440030 + 2 NA intron (NM_001290047, intron 1 of 18) L1ME3G|LINE|L1 70478 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 286.75-15 chr9 129808080 129808335 + 2 NA intron (NM_001317893, intron 3 of 3) intron (NM_001317893, intron 3 of 3) 5023 NR_134113 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 448.5 chr20 480299 480709 + 2 NA 3' UTR (NM_001895, exon 13 of 13) 3' UTR (NM_001895, exon 13 of 13) -17971 NM_144628 128637 Hs.590876 NM_144628 ENSG00000125875 TBC1D20 C20orf140|WARBM4 TBC1 domain family member 20 protein-coding 333.5-6 chr18 46069198 46069521 + 2 NA intron (NM_024430, intron 1 of 14) intron (NM_024430, intron 1 of 14) 2901 NM_024430 9050 Hs.567384 NM_024430 ENSG00000152229 PSTPIP2 MAYP proline-serine-threonine phosphatase interacting protein 2 protein-coding 344.5-9 chr9 73513356 73513689 + 2 NA Intergenic L1M5|LINE|L1 361657 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 348-7 chr3 44248882 44249228 + 2 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 7169 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 363 chr10 15821121 15821452 + 2 NA intron (NM_024948, intron 9 of 14) intron (NM_024948, intron 9 of 14) 39221 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 401.5-2 chr14 76827124 76827489 + 2 NA intron (NM_194287, intron 1 of 13) intron (NM_194287, intron 1 of 13) 898 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 305.5-8 chr17 52299462 52299656 + 2 NA Intergenic Intergenic -90963 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 316-8 chr14 66974172 66974418 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -215145 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 360.25-2 chr5 57171968 57172194 + 2 NA Intergenic Intergenic -1867 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 299.25-3 chr12 112693701 112693957 + 2 NA intron (NM_001347952, intron 1 of 21) L2a|LINE|L2 1347 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 183.25-6 chr10 111855973 111856114 + 2 NA Intergenic Intergenic 327722 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 396.5-2 chr13 65807459 65807895 + 2 NA Intergenic Intergenic -58370 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 184-18 chr16 61004760 61004894 + 2 NA Intergenic L1MEi|LINE|L1 50939 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 281.75-11 chr21 31764315 31764517 + 2 NA Intergenic Intergenic -32298 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 318.75-9 chr20 43201344 43201758 + 2 NA Intergenic Intergenic -11645 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 162-3 chr1 191185233 191185366 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 43199 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 310-15 chr3 182835835 182836000 + 2 NA intron (NM_014616, intron 4 of 29) intron (NM_014616, intron 4 of 29) 42413 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 365-2 chr17 34144359 34144664 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 12295 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 170-23 chr2 194802570 194802724 + 2 NA Intergenic Intergenic 72052 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 210.25-31 chr3 49307801 49307972 + 2 NA intron (NM_199443, intron 7 of 20) AluJr|SINE|Alu -30654 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 309-15 chr4 138903413 138903620 + 2 NA intron (NR_133945, intron 2 of 2) Arthur1B|DNA|hAT-Tip100 109130 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 333.75-4 chr6 79236180 79236450 + 2 NA non-coding (NR_040671, exon 2 of 2) non-coding (NR_040671, exon 2 of 2) -1633 NM_001318888 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 325-4 chr17 62157693 62158061 + 2 NA Intergenic L1M4|LINE|L1 -92599 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 311.5-6 chr2 79865076 79865258 + 2 NA intron (NM_001282598, intron 4 of 17) intron (NM_001282598, intron 4 of 17) 1416 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 294-12 chr3 131011626 131011808 + 2 NA intron (NM_001001486, intron 27 of 27) intron (NM_001001486, intron 27 of 27) 15137 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 231.25-24 chr3 22724171 22724331 + 2 NA Intergenic Intergenic 478327 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 357-3 chr17 51033668 51034107 + 2 NA intron (NM_001130528, intron 5 of 29) intron (NM_001130528, intron 5 of 29) 12991 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 304.5-9 chr20 5244523 5244778 + 2 NA Intergenic L1M5|LINE|L1 72082 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 209-11 chr18 13157188 13157547 + 2 NA Intergenic L1MA4|LINE|L1 -61393 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 240.5-34 chr3 181214209 181214419 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -17423 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 307-18 chr8 92955043 92955229 + 2 NA intron (NM_001171797, intron 1 of 4) intron (NM_001171797, intron 1 of 4) 10453 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 291.25-10 chr18 75009063 75009329 + 2 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 196317 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 167-64 chr8 19016799 19016922 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -3157 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 348-10 chr5 154296781 154297068 + 2 NA intron (NM_198321, intron 2 of 11) intron (NM_198321, intron 2 of 11) -50182 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 253-20 chr6 75099165 75099388 + 2 NA intron (NM_080645, intron 43 of 50) intron (NM_080645, intron 43 of 50) 29506 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 259-17 chr2 162073098 162073239 + 2 NA intron (NM_001935, intron 2 of 25) intron (NM_001935, intron 2 of 25) 1047 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 236-33 chr6 164875898 164876141 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -53956 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 275-8 chr2 123003346 123003538 + 2 NA Intergenic Intergenic 70039 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 267-25 chr8 134036696 134036936 + 2 NA Intergenic Intergenic 150320 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 408-5 chr8 138353068 138353392 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 144031 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 125.5-15 chr10 52085535 52085630 + 2 NA intron (NM_001098512, intron 7 of 17) L1MC4|LINE|L1 228546 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 236-34 chr6 170021086 170021313 + 2 NA Intergenic Intergenic 58576 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 153.5-90 chr7 125233419 125233545 + 2 NA intron (NR_110183, intron 3 of 3) L1MEd|LINE|L1 30809 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 309.75-9 chr3 153954909 153955210 + 2 NA Intergenic L1MC5a|LINE|L1 -165944 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 347.5-14 chr6 41027450 41027643 + 2 NA 3' UTR (NM_173561, exon 9 of 9) 3' UTR (NM_173561, exon 9 of 9) -4266 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 166.75-49 chr5 76214794 76214935 + 2 NA intron (NM_014979, intron 4 of 12) L1MA9|LINE|L1 131481 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 210.5-26 chr17 75061140 75061324 + 2 NA intron (NM_015353, intron 4 of 5) intron (NM_015353, intron 4 of 5) 14007 NM_015353 23510 Hs.514468 NM_015353 ENSG00000180901 KCTD2 - potassium channel tetramerization domain containing 2 protein-coding 319-9 chr5 2619368 2619613 + 2 NA Intergenic Intergenic -93101 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 221.25-18 chr20 11657622 11657828 + 2 NA Intergenic L1MA9|LINE|L1 212990 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 215.5-4 chr10 13176404 13176558 + 2 NA intron (NM_018518, intron 6 of 19) intron (NM_018518, intron 6 of 19) 14923 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 268.5-15 chr2 26942658 26943052 + 2 NA intron (NM_020134, intron 11 of 12) intron (NM_020134, intron 11 of 12) -27782 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 404-5 chr22 44944340 44944682 + 2 NA intron (NM_001284296, intron 2 of 13) intron (NM_001284296, intron 2 of 13) 59108 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 347.5-10 chr17 25920140 25920430 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1168956 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 286.5-9 chr2 35228460 35228674 + 2 NA Intergenic Intergenic -242838 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 336-5 chr16 88942571 88942830 + 2 NA intron (NM_001290330, intron 1 of 1) intron (NM_001290330, intron 1 of 1) -1350 NM_175931 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 275.5-33 chr8 142522720 142522971 + 2 NA intron (NM_001702, intron 22 of 30) intron (NM_001702, intron 22 of 30) 73196 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 251.5-13 chr19 33509209 33509357 + 2 NA intron (NM_001166056, intron 3 of 12) intron (NM_001166056, intron 3 of 12) 12508 NM_001166057 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 235-25 chr2 124675499 124675803 + 2 NA intron (NM_130773, intron 13 of 23) L1M4|LINE|L1 650364 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 503.75-2 chr5 28769473 28769917 + 2 NA Intergenic Intergenic -157175 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 262-24 chr6 130989014 130989174 + 2 NA intron (NM_001135554, intron 1 of 14) AluSx|SINE|Alu 11673 NM_001252660 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 289.5-23 chr8 87197518 87197862 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 331275 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 168.75-40 chr4 31681865 31681967 + 2 NA Intergenic Intergenic 175372 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 358.75-4 chr6 34446100 34446563 + 2 NA Intergenic AluSx1|SINE|Alu -19745 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 216-8 chr12 68651473 68651670 + 2 NA intron (NM_001251921, intron 3 of 6) intron (NM_001251921, intron 3 of 6) -24196 NR_033335 100379132 Hs.724530 NR_033335 ENSG00000206650 SNORA70G U70G small nucleolar RNA, H/ACA box 70G snoRNA 144.5-80 chr4 105996531 105996638 + 2 NA Intergenic Intergenic 25894 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 339.75-14 chr8 135022763 135023090 + 2 NA Intergenic L1MA4A|LINE|L1 172991 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 273.25-18 chr8 86163242 86163506 + 2 NA Intergenic Intergenic 64464 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 246-38 chr8 127061115 127061321 + 2 NA Intergenic Intergenic -18656 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 209-27 chr5 132893187 132893353 + 2 NA intron (NM_014423, intron 11 of 20) intron (NM_014423, intron 11 of 20) 19602 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 355-8 chr6 153641785 153642099 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -368554 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 294.5-7 chr12 42411302 42411483 + 2 NA intron (NM_016488, intron 9 of 12) LTR3B_|LTR|ERVK 72223 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 346.5-6 chr7 19394969 19395234 + 2 NA Intergenic Intergenic -249680 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 250.5-18 chr2 15446254 15446553 + 2 NA intron (NR_052013, intron 21 of 50) L1MEf|LINE|L1 114931 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 223.5-8 chr1 235151523 235151707 + 2 NA intron (NR_144492, intron 3 of 8) MER20|DNA|hAT-Charlie 9635 NR_027762 23029 Hs.535224 NM_015014 ENSG00000188739 RBM34 - RNA binding motif protein 34 protein-coding 365-4 chr21 34662145 34662426 + 2 NA Intergenic L1MA4A|LINE|L1 -6709 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 396.5-3 chr14 60298941 60299215 + 2 NA TTS (NM_177952) TTS (NM_177952) -24118 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 212-9 chr11 110234367 110234530 + 2 NA intron (NM_001260493, intron 12 of 15) intron (NM_001260493, intron 12 of 15) 62264 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 288-13 chr3 86988173 86988327 + 2 NA intron (NM_001320493, intron 1 of 3) intron (NM_001320493, intron 1 of 3) 2899 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 273.25-16 chr7 27794855 27795141 + 2 NA intron (NM_001362794, intron 11 of 16) intron (NM_001362794, intron 11 of 16) 54903 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 265.25-18 chr2 117135152 117135391 + 2 NA Intergenic LTR29|LTR|ERV1 -679420 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 275.75-4 chr11 2633101 2633282 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 66807 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 353.5-2 chr14 46390488 46390751 + 2 NA intron (NR_102702, intron 3 of 3) LTR78B|LTR|ERV1 -80740 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 196-39 chr6 55637301 55637417 + 2 NA Intergenic LTR54B|LTR|ERV1 -58145 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 359.5-4 chr12 61637498 61637843 + 2 NA Intergenic L1ME3Cz|LINE|L1 555169 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 266.25-11 chr18 8251894 8252113 + 2 NA intron (NM_001105244, intron 17 of 32) intron (NM_001105244, intron 17 of 32) 115031 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 327.25-5 chr4 36987295 36987461 + 2 NA Intergenic L1ME1|LINE|L1 -14401 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 174.5-32 chr17 54300207 54300354 + 2 NA Intergenic L1M5|LINE|L1 477353 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 304.25-12 chr4 80842790 80843295 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -187666 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 296-3 chr10 97990004 97990294 + 2 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) 40472 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 598.25 chr6 154224778 154225125 + 2 NA intron (NM_015553, intron 5 of 11) intron (NM_015553, intron 5 of 11) 105130 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 327.75-5 chr14 64090507 64090882 + 2 NA intron (NM_015180, intron 59 of 114) intron (NM_015180, intron 59 of 114) 4431 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 309-11 chr2 88658419 88658801 + 2 NA Intergenic Intergenic 30781 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 EIF2AK3-DT - EIF2AK3 divergent transcript ncRNA 191-23 chr2 77144954 77145109 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 159066 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 284-9 chr17 34990233 34990405 + 2 NA intron (NM_013975, intron 4 of 19) AluSz6|SINE|Alu 9807 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 206.75-33 chr8 86221110 86221265 + 2 NA intron (NM_138817, intron 2 of 3) L1ME4a|LINE|L1 9194 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 457.75 chr12 18947099 18947339 + 2 NA Intergenic Intergenic -182514 NM_001190860 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 233-15 chr15 80392880 80393054 + 2 NA Intergenic Intergenic -11415 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 214-9 chr11 21667096 21667271 + 2 NA Intergenic L2a|LINE|L2 -525902 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 297-11 chr14 104161482 104161733 + 2 NA intron (NM_015656, intron 4 of 14) intron (NM_015656, intron 4 of 14) 22884 NM_015656 26153 Hs.134970 NM_015656 ENSG00000066735 KIF26A - kinesin family member 26A protein-coding 251.5-26 chr4 187389029 187389213 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 18473 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 332-3 chr15 56059741 56060003 + 2 NA Intergenic Intergenic -66260 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 234-34 chr6 37439704 37439846 + 2 NA intron (NM_015050, intron 2 of 23) intron (NM_015050, intron 2 of 23) 6554 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 333.5-13 chr6 57092314 57092581 + 2 NA intron (NM_001257273, intron 2 of 3) intron (NM_001257273, intron 2 of 3) 2259 NM_001257273 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 304-2 chr11 76010804 76011046 + 2 NA intron (NM_003369, intron 11 of 14) L2c|LINE|L2 195577 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 152.75-53 chr5 58303035 58303190 + 2 NA Intergenic L1ME3A|LINE|L1 156974 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 265.25-12 chr13 55907109 55907295 + 2 NA Intergenic L1ME2|LINE|L1 732748 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 270-15 chr2 217434184 217434344 + 2 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 151531 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 277-21 chr5 92169235 92169550 + 2 NA Intergenic L1MEd|LINE|L1 -786075 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 338-6 chr2 25819632 25819906 + 2 NA intron (NM_018263, intron 2 of 11) L1MC4|LINE|L1 11132 NM_001369346 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 379-4 chr20 9786855 9787134 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 52082 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 226-34 chr8 80808307 80808570 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 66030 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 340.25-8 chr7 13759096 13759333 + 2 NA Intergenic Intergenic 227300 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 150-78 chr8 121010150 121010340 + 2 NA Intergenic MIR3|SINE|MIR -198199 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 222-8 chr12 111053766 111053929 + 2 NA intron (NM_015267, intron 1 of 21) intron (NM_015267, intron 1 of 21) 19682 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 181-12 chr10 114139097 114139196 + 2 NA intron (NM_001321829, intron 7 of 16) intron (NM_001321829, intron 7 of 16) 35033 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 192-5 chr10 76842959 76843171 + 2 NA Intergenic L1ME3Cz|LINE|L1 -44979 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 170.25-69 chr9 69129546 69129644 + 2 NA intron (NM_001369871, intron 1 of 24) intron (NM_001369871, intron 1 of 24) 6580 NM_001369871 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 258-23 chr4 60164237 60164418 + 2 NA Intergenic Intergenic -758292 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 280.75-15 chr7 100470776 100470961 + 2 NA intron (NR_130119, intron 3 of 4) MER91B|DNA|hAT-Tip100 -6608 NM_001004323 402573 Hs.632306 NM_001004323 ENSG00000185955 C7orf61 - chromosome 7 open reading frame 61 protein-coding 355-10 chr7 93625612 93625814 + 2 NA Intergenic L1MA3|LINE|L1 -50983 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 355-5 chr2 37871225 37871443 + 2 NA intron (NR_110012, intron 1 of 3) intron (NR_110012, intron 1 of 3) 4529 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 509 chr2 22134712 22135030 + 2 NA Intergenic Intergenic -401608 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 206-36 chr8 61308194 61308369 + 2 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 20311 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 249-45 chrX 26724023 26724156 + 2 NA Intergenic L1MEh|LINE|L1 165752 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 420.75-2 chr4 48664757 48665091 + 2 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 115375 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 122-61 chr5 144176827 144176911 + 2 NA intron (NM_020768, intron 2 of 3) L1P4|LINE|L1 5996 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 287.75-12 chr8 125100961 125101119 + 2 NA intron (NM_001349485, intron 1 of 6) intron (NM_001349485, intron 1 of 6) 9180 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 277.25-8 chr11 111084328 111084478 + 2 NA Intergenic L1ME4b|LINE|L1 12915 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 344.5-7 chr6 122663347 122663671 + 2 NA intron (NM_001270395, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 10780 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 290.25-10 chr17 65020573 65020774 + 2 NA intron (NM_006572, intron 2 of 3) AluSx|SINE|Alu 35101 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 237.5-15 chr15 66687893 66688052 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -14264 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 177.25-47 chr6 156776378 156776507 + 2 NA Intergenic Intergenic -1413 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 279-21 chr7 83758349 83758535 + 2 NA Intergenic L1ME5|LINE|L1 -109303 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 145.25-38 chr18 69151635 69151761 + 2 NA Intergenic Intergenic -249190 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 274.75-14 chr22 35201339 35201677 + 2 NA intron (NR_126356, intron 1 of 5) MIRc|SINE|MIR 29548 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 424-3 chr4 60525996 60526364 + 2 NA Intergenic Intergenic -396439 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 322-4 chr21 28357808 28357997 + 2 NA Intergenic Intergenic -129235 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 264 chr10 36737991 36738222 + 2 NA Intergenic Intergenic -387751 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 408.5-2 chr4 71063540 71063800 + 2 NA Intergenic Intergenic 70021 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 370-3 chr10 95075944 95076215 + 2 NA Intergenic L1MA2|LINE|L1 -6582 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 174.5-40 chr2 75889483 75889697 + 2 NA Intergenic Intergenic -178675 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 299-8 chr18 53310233 53310426 + 2 NA intron (NM_005215, intron 13 of 28) intron (NM_005215, intron 13 of 28) 73228 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 297-9 chr13 96760274 96760506 + 2 NA intron (NM_153456, intron 1 of 1) HAL1ME|LINE|L1 223782 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 234.25-17 chr2 69583049 69583195 + 2 NA intron (NM_014911, intron 2 of 21) MIR3|SINE|MIR 60617 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 434.5-2 chr12 4496735 4497008 + 2 NA intron (NR_144382, intron 7 of 9) intron (NR_144382, intron 7 of 9) 41598 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 369-8 chr2 211121683 211122029 + 2 NA Intergenic Intergenic 504285 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 211-4 chr1 191633489 191633652 + 2 NA Intergenic L1MA2|LINE|L1 -405072 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 278.5-13 chr15 60128288 60128618 + 2 NA Intergenic MIR|SINE|MIR 124142 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 199.75-35 chr5 59895734 59895833 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -2057 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 141-36 chr2 20035354 20035490 + 2 NA intron (NM_014713, intron 4 of 6) intron (NM_014713, intron 4 of 6) 16206 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 305.75-7 chr2 67275992 67276146 + 2 NA intron (NR_110564, intron 3 of 4) MIRc|SINE|MIR -60750 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 321-13 chr8 63749049 63749286 + 2 NA Intergenic L3|LINE|CR1 -20263 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 143.75-21 chr11 41000112 41000242 + 2 NA intron (NM_001258419, intron 1 of 6) MER5B|DNA|hAT-Charlie 459459 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 301.75-8 chr16 78968214 78968579 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 632341 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 426-4 chr3 106900537 106901017 + 2 NA Intergenic Intergenic 339861 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 324.75-12 chr8 137103623 137103944 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 309805 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 253.5-36 chr5 148888763 148888991 + 2 NA Intergenic Intergenic 62284 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 262-25 chr8 78812199 78812430 + 2 NA Intergenic L1MA8|LINE|L1 -6791 NM_001199886 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 188-9 chr12 58492311 58492415 + 2 NA Intergenic Intergenic -99339 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 222.25-20 chr20 53194475 53194607 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 9258 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 318-13 chr3 69195009 69195236 + 2 NA exon (NM_015123, exon 16 of 23) exon (NM_015123, exon 16 of 23) -72527 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 234.25-20 chr3 34145816 34146042 + 2 NA Intergenic Intergenic 347299 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 368-8 chr6 92123248 92123519 + 2 NA Intergenic Intergenic -432955 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 294.25-14 chr9 115976627 115976827 + 2 NA Intergenic Intergenic -51520 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 271-3 chr1 219026936 219027134 + 2 NA intron (NR_031644, intron 6 of 6) L1MB7|LINE|L1 -108524 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 256-17 chr2 75628998 75629205 + 2 NA Intergenic Intergenic -17682 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 241.5-14 chr18 3635808 3636028 + 2 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 32181 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 183.5-16 chr11 106646470 106646582 + 2 NA Intergenic Intergenic 371950 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 314.75-3 chr12 118883194 118883529 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -49825 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 230-20 chr3 145769285 145769619 + 2 NA Intergenic Intergenic 299733 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 302.5-18 chr8 49936328 49936632 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 25073 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 243.75-12 chr2 8767375 8767652 + 2 NA intron (NM_001348745, intron 22 of 22) intron (NM_001348745, intron 22 of 22) 70100 NM_001348732 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 209.5-13 chr19 12758303 12758529 + 2 NA TTS (NM_017682) TTS (NM_017682) 6625 NM_017682 54831 Hs.435611 NM_017682 ENSG00000039987 BEST2 VMD2L1 bestrophin 2 protein-coding 157.75-43 chr2 148852776 148852913 + 2 NA Intergenic Intergenic -22383 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 168.25-29 chr19 46483816 46483926 + 2 NA intron (NM_001205281, intron 3 of 3) L1ME4b|LINE|L1 11996 NM_020709 57469 Hs.7193 NM_020709 ENSG00000204851 PNMA8B PNMAL2 PNMA family member 8B protein-coding 324.25-4 chr2 153835209 153835443 + 2 NA Intergenic Intergenic -36596 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 289-9 chr2 98676309 98676549 + 2 NA intron (NM_012214, intron 3 of 15) intron (NM_012214, intron 3 of 15) -12956 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 343-3 chr15 66458115 66458341 + 2 NA intron (NM_002755, intron 5 of 10) L4_C_Mam|LINE|RTE-X 38806 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 392.5-6 chr4 90695295 90695559 + 2 NA intron (NM_207491, intron 6 of 7) intron (NM_207491, intron 6 of 7) 460396 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 432.75 chr1 44055711 44056095 + 2 NA Intergenic MER66-int|LTR|ERV1 -24441 NM_001024845 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 263.5-30 chr7 16673568 16673748 + 2 NA intron (NM_001362717, intron 2 of 11) intron (NM_001362717, intron 2 of 11) 12444 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 444-2 chr8 128508577 128508832 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 55975 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 296-10 chr2 77099209 77099488 + 2 NA intron (NR_146416, intron 1 of 1) L1ME3C|LINE|L1 113383 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 263-26 chr8 73488708 73488893 + 2 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 68726 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 258.25-7 chr15 89373641 89373809 + 2 NA intron (NR_133003, intron 1 of 6) intron (NR_133003, intron 1 of 6) -4317 NR_015411 254559 Hs.136313 NR_015411 ENSG00000255571 MIR9-3HG LINC00925 MIR9-3 host gene ncRNA 219.5-26 chr2 99511975 99512221 + 2 NA Intergenic MER110-int|LTR|ERV1 -22081 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 196.5-76 chr8 138617721 138617929 + 2 NA intron (NM_152888, intron 53 of 64) MIRb|SINE|MIR -120095 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 359-4 chr2 53037943 53038166 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -335439 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 247.75-24 chr7 32130340 32130550 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -59009 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 396-2 chr14 88726617 88726926 + 2 NA intron (NM_183387, intron 7 of 42) intron (NM_183387, intron 7 of 42) 66182 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 233-31 chr6 161567431 161567632 + 2 NA intron (NM_004562, intron 8 of 11) L2a|LINE|L2 96554 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 359.25-2 chr12 63007850 63008258 + 2 NA Intergenic Intergenic -72904 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 306.75-10 chr8 134858449 134858655 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 8617 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 149.5-25 chr12 61109995 61110131 + 2 NA Intergenic Intergenic 1082776 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 334.5-3 chr10 108774369 108774617 + 2 NA Intergenic L1MEf|LINE|L1 -705200 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 327.75-2 chr11 39507729 39507900 + 2 NA Intergenic Intergenic 785316 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 265-19 chr20 45210460 45210619 + 2 NA TTS (NM_003007) TTS (NM_003007) 3506 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 388-3 chr16 10442375 10442736 + 2 NA intron (NR_045816, intron 6 of 9) HERVIP10B3-int|LTR|ERV1 56494 NM_001256160 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 270.5-6 chr12 40415776 40416054 + 2 NA intron (NM_173600, intron 9 of 173) intron (NM_173600, intron 9 of 173) 22521 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 474.75 chr14 81824152 81824578 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -81227 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 357.75-11 chr8 50697736 50698130 + 2 NA intron (NR_135797, intron 17 of 20) L1PB4|LINE|L1 533802 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 326-14 chr4 28821338 28821573 + 2 NA Intergenic MIR|SINE|MIR 1873 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 403-5 chr8 141639386 141639701 + 2 NA Intergenic MIRc|SINE|MIR -132313 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 332.75-6 chr4 63870116 63870322 + 2 NA Intergenic Intergenic 539231 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 202-22 chr5 130139786 130140160 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 235508 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 240.75-12 chr14 84507404 84507621 + 2 NA Intergenic MIRb|SINE|MIR -764420 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 219.75-22 chr21 29578991 29579214 + 2 NA intron (NM_000830, intron 13 of 16) intron (NM_000830, intron 13 of 16) -16938 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 379.25 chr16 57735976 57736246 + 2 NA intron (NM_005886, intron 1 of 19) intron (NM_005886, intron 1 of 19) 341 NM_005886 10300 Hs.275675 NM_005886 ENSG00000140854 KATNB1 KAT|LIS6 katanin regulatory subunit B1 protein-coding 438-3 chr20 29263523 29263940 + 2 NA Intergenic ALR/Alpha|Satellite|centr 153230 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 196.75-31 chr5 39724930 39725143 + 2 NA Intergenic Intergenic 204605 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 125.5-38 chr14 32969515 32969616 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 30686 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 416.75-2 chr19 30194263 30194663 + 2 NA Intergenic L1M4b|LINE|L1 -177921 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 385.25-6 chr6 37340042 37340289 + 2 NA Intergenic Intergenic -13818 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 374.5-5 chr5 22824032 22824302 + 2 NA intron (NM_001364105, intron 1 of 15) L1MEd|LINE|L1 29177 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 219-44 chrX 116417566 116417678 + 2 NA Intergenic Intergenic -18984 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 293-18 chr6 3237014 3237195 + 2 NA intron (NR_147505, intron 1 of 1) intron (NR_147505, intron 1 of 1) 5701 NR_147505 100422781 Hs.664539 NR_147505 LOC100422781 - uncharacterized LOC100422781 ncRNA 165.5-7 chr10 77446530 77446669 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 95727 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 340-4 chr2 18708946 18709324 + 2 NA Intergenic L1MDa|LINE|L1 -119555 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 383-4 chr2 161995068 161995375 + 2 NA intron (NM_001935, intron 24 of 25) intron (NM_001935, intron 24 of 25) 78994 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 482.5 chr11 55124621 55125189 + 2 NA Intergenic ALR/Alpha|Satellite|centr -137250 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 223.5-33 chr2 61679218 61679444 + 2 NA Intergenic LTR26B|LTR|ERV1 -140975 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 249-10 chr15 69100597 69100836 + 2 NA Intergenic Intergenic 19866 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 332-12 chr8 79907982 79908260 + 2 NA Intergenic Intergenic -36384 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 301-6 chr10 60042747 60043041 + 2 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) -81981 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 268.5-20 chr22 37458888 37459150 + 2 NA Intergenic Intergenic 27365 NM_002405 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 354-6 chr2 61010188 61010452 + 2 NA intron (NM_144709, intron 2 of 17) AluSg4|SINE|Alu 6892 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 217-8 chr14 73886761 73887034 + 2 NA promoter-TSS (NM_001242927) promoter-TSS (NM_001242927) 38 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 314-4 chr12 40847345 40847619 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 19544 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 318-26 chr8 121795898 121796192 + 2 NA Intergenic Intergenic -154605 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 313.75-2 chr11 112993342 112993624 + 2 NA intron (NM_181351, intron 1 of 18) MSTA|LTR|ERVL-MaLR -30023 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 233-14 chr12 79230109 79230314 + 2 NA intron (NM_001291901, intron 3 of 9) intron (NM_001291901, intron 3 of 9) 184519 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 314.5 chr10 47209404 47209600 + 2 NA Intergenic L1M5|LINE|L1 -90695 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 505-2 chrX 43195854 43196233 + 2 NA intron (NR_110387, intron 2 of 5) L1ME2|LINE|L1 19049 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 269.75-13 chr4 1527968 1528192 + 2 NA Intergenic L1ME3A|LINE|L1 -121638 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 300.5-10 chr2 36839266 36839428 + 2 NA 3' UTR (NM_003162, exon 18 of 18) 3' UTR (NM_003162, exon 18 of 18) 127189 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 244.5-17 chr2 172862261 172862412 + 2 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 2298 NM_001282899 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 364-9 chr6 42152478 42152729 + 2 NA Intergenic L1ME5|LINE|L1 -2774 NM_001319061 2978 Hs.92858 NM_000409 ENSG00000048545 GUCA1A C6orf131|COD3|CORD14|GCAP|GCAP1|GUCA|GUCA1 guanylate cyclase activator 1A protein-coding 226.5-10 chr11 32705761 32705974 + 2 NA intron (NM_001008391, intron 3 of 17) HAL1|LINE|L1 88791 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 181-34 chr3 85639 85767 + 2 NA Intergenic Intergenic 73952 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 165.5-9 chr10 108558408 108558562 + 2 NA Intergenic L1MC1|LINE|L1 -489192 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 263.5-18 chr22 16268395 16268555 + 2 NA Intergenic ALR/Alpha|Satellite|centr 324335 NM_014406 150160 Hs.128342 NM_014406 ENSG00000198445 CCT8L2 CESK1 chaperonin containing TCP1 subunit 8 like 2 protein-coding 312-7 chr2 196021312 196021542 + 2 NA intron (NM_018897, intron 8 of 64) Tigger1|DNA|TcMar-Tigger 47410 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 272.5-26 chr9 23551382 23551659 + 2 NA intron (NR_121602, intron 13 of 27) intron (NR_121602, intron 13 of 27) 120879 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 380 chr11 41294455 41294751 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 165033 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 197-36 chr3 163109264 163109387 + 2 NA Intergenic Intergenic 193976 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 310.5-3 chr2 51081024 51081369 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 48595 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 407.25-3 chr2 49606173 49606703 + 2 NA Intergenic Intergenic 367765 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 326.75-6 chr2 154140195 154140396 + 2 NA intron (NM_052917, intron 3 of 12) (TGTA)n|Simple_repeat|Simple_repeat 195901 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 199.5-2 chr10 22027747 22027901 + 2 NA Intergenic L1M4|LINE|L1 -24094 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 202.75-26 chr6 139246407 139246586 + 2 NA intron (NM_153235, intron 8 of 9) intron (NM_153235, intron 8 of 9) 45502 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 465 chr3 55476687 55477033 + 2 NA intron (NM_003392, intron 3 of 4) intron (NM_003392, intron 3 of 4) 4538 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 246.25-26 chr6 89751438 89751639 + 2 NA exon (NM_014611, exon 23 of 102) exon (NM_014611, exon 23 of 102) 68256 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 174.75-57 chr9 81708620 81708765 + 2 NA intron (NR_109772, intron 1 of 3) AluYh3a3|SINE|Alu 18979 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 218-41 chr6 41321965 41322127 + 2 NA Intergenic L1ME2|LINE|L1 -13562 NM_004828 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 470 chr11 83153600 83154018 + 2 NA Intergenic Intergenic -3322 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 256.5-16 chr16 5933623 5933834 + 2 NA Intergenic Intergenic -85296 NM_001364800 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 249-27 chr3 45840212 45840378 + 2 NA intron (NM_001276378, intron 3 of 11) intron (NM_001276378, intron 3 of 11) 1824 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 257.25-24 chr9 112131968 112132132 + 2 NA intron (NM_022486, intron 5 of 16) Mam_R4|LINE|Dong-R4 43247 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 311.25-8 chr4 59021375 59021680 + 2 NA intron (NR_133942, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 7954 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 240-11 chr15 80304080 80304311 + 2 NA intron (NR_033833, intron 1 of 2) L1PA4|LINE|L1 37610 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 268.75-24 chr5 37626235 37626447 + 2 NA intron (NM_001345998, intron 10 of 17) L1MA5A|LINE|L1 208481 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 200.25-53 chrX 42190402 42190541 + 2 NA Intergenic L2a|LINE|L2 -266917 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 187.25-13 chr10 102521886 102522046 + 2 NA intron (NM_001178133, intron 2 of 10) intron (NM_001178133, intron 2 of 10) 17994 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 439-3 chr8 88729884 88730204 + 2 NA Intergenic Intergenic -402561 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 244-5 chr11 79418130 79418308 + 2 NA intron (NM_001098816, intron 1 of 33) MER3|DNA|hAT-Charlie 4007 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 309.25-4 chr17 76458114 76458431 + 2 NA intron (NM_001166579, intron 1 of 6) intron (NM_001166579, intron 1 of 6) 4921 NM_001166579 15 Hs.431417 NM_001088 ENSG00000129673 AANAT DSPS|SNAT aralkylamine N-acetyltransferase protein-coding 181.25-42 chr3 106179768 106179944 + 2 NA Intergenic Intergenic -310455 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 348.25-6 chr3 106850247 106850611 + 2 NA Intergenic Intergenic 390209 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 187-53 chr6 95713022 95713214 + 2 NA Intergenic L1MB3|LINE|L1 135583 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 242-26 chr20 11843710 11843892 + 2 NA intron (NR_110635, intron 1 of 1) L2c|LINE|L2 26914 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 216.25-19 chr2 83185091 83185264 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 328374 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 230.75 chr10 52173174 52173321 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 140881 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 556.5 chr4 49118728 49119601 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 132522 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 397.75 chr16 64569778 64570329 + 2 NA Intergenic Intergenic 552010 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 251.5-21 chr3 194366952 194367121 + 2 NA intron (NM_001135057, intron 1 of 2) intron (NM_001135057, intron 1 of 2) 2707 NM_130830 131578 Hs.288467 NM_130830 ENSG00000172061 LRRC15 LIB leucine rich repeat containing 15 protein-coding 158-43 chr3 122902936 122903052 + 2 NA Intergenic Intergenic 16481 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 277.25-13 chr18 1771199 1771442 + 2 NA Intergenic Intergenic -411691 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 257.75-5 chr11 123173805 123173946 + 2 NA intron (NM_024769, intron 1 of 6) AluJb|SINE|Alu 21373 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 154-7 chr10 106158078 106158203 + 2 NA TTS (NR_134331) TTS (NR_134331) 17975 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 268.5-21 chr3 112814933 112815182 + 2 NA TTS (NM_001199215) TTS (NM_001199215) 12579 NR_149026 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 265-25 chr8 60329735 60329970 + 2 NA Intergenic Intergenic -48452 NM_001321838 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 182.75-36 chr4 80915038 80915145 + 2 NA intron (NM_152770, intron 4 of 5) L1ME1|LINE|L1 -115617 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 129.25-15 chr11 118740220 118740284 + 2 NA Intergenic MER34A1|LTR|ERV1 50696 NM_001257191 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 171-34 chr3 45702124 45702300 + 2 NA intron (NM_001319073, intron 2 of 20) intron (NM_001319073, intron 2 of 20) 12816 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 315-15 chr7 30308338 30308505 + 2 NA intron (NM_147128, intron 1 of 4) MER5A|DNA|hAT-Charlie -18531 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 224.5-14 chr15 76610951 76611185 + 2 NA intron (NR_148227, intron 22 of 32) L1M3|LINE|L1 24421 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 326.75-11 chr8 43124760 43125048 + 2 NA Intergenic LTR76|LTR|ERV1 -15560 NM_152419 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 275.5-2 chr10 20347606 20347766 + 2 NA Intergenic MER74B|LTR|ERVL -204284 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 305.5-12 chr21 18015875 18016130 + 2 NA intron (NM_001204177, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 98662 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 179-22 chr14 85411143 85411241 + 2 NA intron (NR_102737, intron 2 of 2) intron (NR_102737, intron 2 of 2) 17277 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 389-4 chr17 59496565 59496905 + 2 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 30122 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 525.75 chr9 8743227 8743674 + 2 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -9504 NM_001171025 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 202-30 chr8 106057218 106057331 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 3229 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 366-10 chr5 67371835 67372197 + 2 NA Intergenic Intergenic -175217 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 379.25-3 chr2 163078050 163078363 + 2 NA Intergenic LTR8A|LTR|ERV1 -239439 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 209-9 chr14 62782888 62783041 + 2 NA intron (NM_139318, intron 9 of 10) L1ME4c|LINE|L1 262494 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 341.5-6 chr5 94581588 94582013 + 2 NA intron (NM_001145678, intron 2 of 20) intron (NM_001145678, intron 2 of 20) 36804 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 138-35 chr2 61928384 61928566 + 2 NA intron (NM_152516, intron 1 of 2) intron (NM_152516, intron 1 of 2) 22833 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 334.75-4 chr2 168812073 168812384 + 2 NA intron (NM_001171632, intron 2 of 14) intron (NM_001171632, intron 2 of 14) 9631 NM_052946 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 238.5-2 chr1 38999256 38999402 + 2 NA intron (NM_001136275, intron 2 of 3) L1MB5|LINE|L1 8053 NM_024595 79647 Hs.293563 NM_024595 ENSG00000174574 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 383.5-3 chr12 51424098 51424455 + 2 NA promoter-TSS (NM_001258403) promoter-TSS (NM_001258403) -555 NM_001039960 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 236.5-49 chr8 133182476 133182610 + 2 NA Intergenic MIRb|SINE|MIR -8496 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 160.5-35 chr2 55985586 55985728 + 2 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -2581 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 151.75-41 chr2 59643521 59643713 + 2 NA Intergenic L1ME3|LINE|L1 425909 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 372.5 chr1 204264213 204264476 + 2 NA intron (NM_014935, intron 6 of 22) intron (NM_014935, intron 6 of 22) -50356 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 278 chr1 90519396 90519579 + 2 NA Intergenic L1M4a1|LINE|L1 -138263 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 404.75 chr10 115580381 115580702 + 2 NA intron (NM_207303, intron 26 of 28) L1MA9|LINE|L1 487176 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 414-2 chr11 20601967 20602279 + 2 NA intron (NM_001318369, intron 2 of 14) intron (NM_001318369, intron 2 of 14) 2723 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 175-8 chr11 31711669 31711899 + 2 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 88877 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 253.75-7 chr14 35886473 35886639 + 2 NA Intergenic L1MA9|LINE|L1 60218 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 345-11 chr21 19027101 19027326 + 2 NA Intergenic Intergenic -267401 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 294.25-3 chr12 26783669 26784094 + 2 NA intron (NM_002223, intron 2 of 56) L1MD3|LINE|L1 49313 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 335.5-12 chr8 118245967 118246260 + 2 NA intron (NM_001101676, intron 4 of 4) L2c|LINE|L2 -134294 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 334-2 chr12 41024477 41024681 + 2 NA intron (NM_001843, intron 20 of 23) intron (NM_001843, intron 20 of 23) 116222 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 239-10 chr10 111540189 111540535 + 2 NA Intergenic L1ME2|LINE|L1 426071 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 196-9 chr10 117956908 117957088 + 2 NA Intergenic Intergenic -89823 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 205.75-24 chr2 215601692 215601867 + 2 NA Intergenic Intergenic -116264 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 263.75-3 chr15 26954993 26955292 + 2 NA Intergenic L1MC4a|LINE|L1 -16039 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 332.75-2 chr11 99361912 99362277 + 2 NA intron (NM_001243271, intron 2 of 20) L1MB4|LINE|L1 -194051 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 179.75-23 chr18 3660556 3660666 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 56874 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 260.5-6 chr12 17394435 17394653 + 2 NA Intergenic Intergenic 194534 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 210.25-17 chr17 33975441 33975665 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 181253 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 349-7 chr4 105696737 105696980 + 2 NA intron (NM_001142471, intron 2 of 6) L1ME1|LINE|L1 11831 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 143-53 chr4 89756997 89757105 + 2 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -79350 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 199-22 chr2 65114289 65114461 + 2 NA intron (NM_015543, intron 1 of 3) A-rich|Low_complexity|Low_complexity 15731 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 161-42 chr2 157939637 157939751 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -55485 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 148-18 chr12 125533224 125533327 + 2 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -89177 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 163.75-70 chr7 104539458 104539601 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 210873 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 382-2 chr16 11676362 11676600 + 2 NA 3' UTR (NM_003498, exon 2 of 2) 3' UTR (NM_003498, exon 2 of 2) 8026 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 228-12 chr14 44353127 44353294 + 2 NA Intergenic L1MA5A|LINE|L1 154073 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 388.5-4 chr11 21034338 21034700 + 2 NA intron (NM_201551, intron 12 of 18) L1PA13|LINE|L1 364933 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 439.25-2 chr7 110641388 110641692 + 2 NA Intergenic Intergenic -449466 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 323-18 chr8 103064651 103064871 + 2 NA exon (NM_001695, exon 11 of 13) exon (NM_001695, exon 11 of 13) 43678 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 276.5-17 chr8 108696974 108697361 + 2 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 90427 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 422.25 chr1 70436165 70436431 + 2 NA intron (NM_001902, intron 10 of 11) AluSz|SINE|Alu 25030 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 281.5-3 chr10 15857742 15858026 + 2 NA intron (NM_024948, intron 1 of 14) intron (NM_024948, intron 1 of 14) 2623 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 399.25-2 chr10 128254379 128254869 + 2 NA Intergenic Intergenic -31326 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 411-3 chr2 68076269 68076841 + 2 NA Intergenic Tigger12c|DNA|TcMar-Tigger -13551 NM_173177 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 359.75 chr1 64164007 64164244 + 2 NA intron (NM_005012, intron 8 of 8) intron (NM_005012, intron 8 of 8) -39498 NM_001366232 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 361-5 chr8 51984924 51985134 + 2 NA Intergenic Intergenic -85843 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 216.5-10 chr12 87787909 87788020 + 2 NA intron (NR_149056, intron 2 of 3) L1MA9|LINE|L1 -3253 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 219.5-13 chr14 30497777 30497970 + 2 NA intron (NR_151720, intron 3 of 3) L2c|LINE|L2 -61250 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 150-20 chr12 58149674 58149783 + 2 NA Intergenic AluSx1|SINE|Alu 61836 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 221-14 chr13 77452642 77452832 + 2 NA Intergenic Intergenic -82937 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 268.75-9 chr13 61202833 61203018 + 2 NA Intergenic Intergenic -3045 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 461.5 chr13 84553622 84554054 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -229816 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 129-64 chr6 42858085 42858228 + 2 NA intron (NM_001318819, intron 11 of 13) intron (NM_001318819, intron 11 of 13) -21460 NM_001366481 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 118.75-99 chrX 69945424 69945606 + 2 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -77342 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 201-19 chr14 49156291 49156478 + 2 NA Intergenic Intergenic 429996 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 246.25-22 chr5 9050687 9050923 + 2 NA intron (NM_003966, intron 20 of 22) intron (NM_003966, intron 20 of 22) 3090 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 185-40 chr7 278698 278877 + 2 NA Intergenic Intergenic 86216 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 172.5-73 chr6 129869478 129869640 + 2 NA Intergenic Intergenic -8244 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 242-23 chr2 53557613 53557796 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -210079 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 274-14 chr2 74978576 74978772 + 2 NA Intergenic HAL1b|LINE|L1 20031 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 254-13 chr5 53492059 53492260 + 2 NA Intergenic Intergenic 11530 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 214.25-16 chr15 71654319 71654492 + 2 NA intron (NM_001286429, intron 1 of 11) L1ME4c|LINE|L1 37134 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 173-43 chr5 20582259 20582352 + 2 NA Intergenic L1MB3|LINE|L1 -6592 NM_001291956 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 377.75-3 chr20 31072672 31072915 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -184871 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 345.25 chr14 50807759 50808005 + 2 NA intron (NM_016350, intron 3 of 28) intron (NM_016350, intron 3 of 28) -13915 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 352.75-5 chr4 32168827 32169077 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -146530 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 234-46 chr9 33474885 33475064 + 2 NA Intergenic L1MC4|LINE|L1 -1031 NM_139235 65083 Hs.493709 NM_022917 ENSG00000165271 NOL6 NRAP|UTP22|bA311H10.1 nucleolar protein 6 protein-coding 310-5 chr11 59968683 59968939 + 2 NA intron (NR_130719, intron 5 of 8) intron (NR_130719, intron 5 of 8) 25932 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 114.5-80 chr5 2913749 2913858 + 2 NA Intergenic Intergenic -4051 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 217.5-6 chr10 51985415 51985592 + 2 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -285908 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 292-9 chr20 40939551 40939792 + 2 NA Intergenic L1MA9|LINE|L1 -41042 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 177-64 chr9 29010994 29011168 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -122126 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 282-25 chr9 31863382 31863612 + 2 NA Intergenic L1MA5A|LINE|L1 -482007 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 149.5-45 chr18 35985418 35985528 + 2 NA Intergenic L1MC5a|LINE|L1 12794 NM_031446 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 212-43 chr8 138650539 138650673 + 2 NA intron (NM_152888, intron 45 of 64) intron (NM_152888, intron 45 of 64) -152876 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 385-6 chr21 27764569 27764768 + 2 NA Intergenic L1MB2|LINE|L1 42289 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 281.25-3 chr11 37836273 37836441 + 2 NA Intergenic Intergenic -102244 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 235-42 chr9 104620160 104620335 + 2 NA Intergenic Intergenic -2043 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 351.75-5 chr8 131707224 131707436 + 2 NA Intergenic L2c|LINE|L2 -196763 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 121-72 chr8 125126801 125126912 + 2 NA intron (NM_001349486, intron 3 of 7) MIRb|SINE|MIR 34996 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 238-35 chr8 49337715 49337867 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 174389 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 410.75 chr10 82605528 82605914 + 2 NA intron (NR_163253, intron 3 of 10) L1MC2|LINE|L1 -372801 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 248.5-34 chr8 40668058 40668224 + 2 NA intron (NM_001135731, intron 4 of 5) Tigger2|DNA|TcMar-Tigger 229685 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 268-4 chr10 81383868 81384089 + 2 NA Intergenic Intergenic -491216 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 309.25-8 chr2 100739580 100739879 + 2 NA Intergenic L1ME1|LINE|L1 -80410 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 154.75-17 chr14 65380426 65380539 + 2 NA Intergenic Intergenic -30110 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 438.5-4 chr5 153786424 153786684 + 2 NA intron (NR_047578, intron 12 of 13) intron (NR_047578, intron 12 of 13) 112433 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 331-7 chr14 67879635 67880078 + 2 NA intron (NM_133509, intron 5 of 10) Charlie1a|DNA|hAT-Charlie 56264 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 253.5-41 chr7 34827764 34827969 + 2 NA intron (NM_207172, intron 5 of 8) MIRb|SINE|MIR 6465 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 370-9 chr9 73921792 73922191 + 2 NA Intergenic L2c|LINE|L2 -449540 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 331-15 chr8 90819921 90820097 + 2 NA intron (NM_022351, intron 2 of 12) L1MC3|LINE|L1 28234 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 225-43 chr8 122766893 122767019 + 2 NA Intergenic L1MD2|LINE|L1 -14699 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 230-26 chr7 16691997 16692158 + 2 NA intron (NM_001362717, intron 7 of 11) intron (NM_001362717, intron 7 of 11) 30863 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 255-21 chr5 77528512 77528683 + 2 NA Intergenic L1MB5|LINE|L1 -36281 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 260.5-5 chr11 9923694 9923933 + 2 NA intron (NR_120539, intron 2 of 2) intron (NR_120539, intron 2 of 2) 84671 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 262.5-9 chr14 87346358 87346576 + 2 NA Intergenic Intergenic 308827 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 235-39 chr6 68569550 68569687 + 2 NA Intergenic L1PA17|LINE|L1 64706 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 320.5-8 chr15 95902686 95903092 + 2 NA Intergenic Intergenic 224952 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 306.5-4 chr2 21613950 21614116 + 2 NA Intergenic L1MA1|LINE|L1 96619 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 303.25-7 chr2 104795594 104795844 + 2 NA Intergenic Intergenic -38000 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 171-8 chr10 49050432 49050603 + 2 NA intron (NM_001031746, intron 5 of 7) intron (NM_001031746, intron 5 of 7) -64930 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 331.25-5 chr3 130727697 130727904 + 2 NA intron (NM_014602, intron 6 of 19) intron (NM_014602, intron 6 of 19) 19029 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 192.75-22 chr22 20175854 20175985 + 2 NA Intergenic Intergenic -24864 NM_001365892 388849 Hs.454905 NM_001243537 ENSG00000234409 CCDC188 - coiled-coil domain containing 188 protein-coding 233.5-18 chr15 55978302 55978554 + 2 NA intron (NM_001329212, intron 1 of 28) intron (NM_001329212, intron 1 of 28) 15184 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 395.25-4 chr5 106284764 106285151 + 2 NA Intergenic Intergenic 726057 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 346-9 chr3 186213372 186213646 + 2 NA intron (NM_001346, intron 20 of 24) MER5A1|DNA|hAT-Charlie -104420 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 255.5-17 chr21 17852841 17853030 + 2 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 32673 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 276.25-10 chr7 77282831 77283212 + 2 NA intron (NM_020879, intron 15 of 18) intron (NM_020879, intron 15 of 18) -83202 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 228.5-31 chr6 53155855 53156139 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -7156 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 324.5-13 chr5 148179932 148180139 + 2 NA Intergenic L1MA8|LINE|L1 11489 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 360.5-5 chr2 106579182 106579368 + 2 NA Intergenic Intergenic 91911 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 218.5-39 chr5 34898662 34898834 + 2 NA intron (NM_001317949, intron 10 of 10) intron (NM_001317949, intron 10 of 10) 16756 NM_002853 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 143.25-57 chr5 7115469 7115552 + 2 NA Intergenic L1M4|LINE|L1 153844 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 365.5-2 chr12 117814597 117815029 + 2 NA intron (NM_173598, intron 3 of 19) MER5A|DNA|hAT-Charlie 154177 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 228-49 chr9 80682585 80682759 + 2 NA Intergenic Intergenic 707649 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 356.5-3 chr14 51056639 51056870 + 2 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 38950 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 269.5-27 chr8 51999490 51999692 + 2 NA Intergenic Intergenic -100405 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 137-32 chr18 63767166 63767310 + 2 NA intron (NM_001040147, intron 1 of 7) L1MD2|LINE|L1 -8137 NM_001261831 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 273-10 chr17 28946221 28946416 + 2 NA intron (NM_001033561, intron 2 of 14) intron (NM_001033561, intron 2 of 14) 5200 NM_001290131 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 326.5-5 chr18 2901758 2902098 + 2 NA intron (NM_032048, intron 4 of 7) intron (NM_032048, intron 4 of 7) 44695 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 164.25-6 chr1 187823176 187823524 + 2 NA Intergenic L1PBa|LINE|L1 379722 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 252.5-19 chr2 164912057 164912352 + 2 NA intron (NM_001199148, intron 8 of 10) intron (NM_001199148, intron 8 of 10) 43321 NM_001351537 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 353.5-4 chr9 34790292 34790615 + 2 NA Intergenic MER65A|LTR|ERV1 48133 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 282.5-11 chr16 89026295 89026561 + 2 NA Intergenic Intergenic -49221 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 300.25-11 chr21 46291842 46292029 + 2 NA 3' UTR (NM_001006114, exon 3 of 3) 3' UTR (NM_001006114, exon 3 of 3) 5593 NM_001314023 54059 Hs.474066 NM_058181 ENSG00000182362 YBEY C21orf57 ybeY metalloendoribonuclease protein-coding 203.25-6 chr10 105211827 105211949 + 2 NA intron (NM_014978, intron 17 of 26) MER5A1|DNA|hAT-Charlie -545672 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 161.25-48 chr2 190884995 190885088 + 2 NA intron (NM_014905, intron 1 of 17) intron (NM_014905, intron 1 of 17) 4220 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 303-8 chr22 24707351 24707596 + 2 NA Intergenic Intergenic -48326 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 410-2 chr11 73152545 73152775 + 2 NA Intergenic Intergenic -10342 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 270.75-7 chr17 54963648 54963885 + 2 NA intron (NM_001162861, intron 2 of 3) intron (NM_001162861, intron 2 of 3) 4888 NR_027941 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 290.5-12 chr14 86409424 86409594 + 2 NA Intergenic Intergenic 474831 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 395.5-3 chr6 6165837 6166137 + 2 NA intron (NM_000129, intron 13 of 14) intron (NM_000129, intron 13 of 14) -3347 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 254.25-12 chr2 184869675 184869874 + 2 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 271245 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 196.5-44 chr2 66508029 66508183 + 2 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -65924 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 329.5-5 chr17 65761009 65761199 + 2 NA intron (NM_001353129, intron 21 of 26) L1MCa|LINE|L1 65347 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 370 chr1 61757292 61757634 + 2 NA intron (NM_001350145, intron 1 of 43) AluJb|SINE|Alu 14983 NM_176877 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 190.25-41 chr4 93079692 93079887 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) -748964 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 336.5 chr12 59293956 59294258 + 2 NA Intergenic Intergenic -301922 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 351-7 chr5 123997050 123997236 + 2 NA Intergenic MER74A|LTR|ERVL 441377 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 222-11 chr14 20239682 20239878 + 2 NA Intergenic Intergenic -3012 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 382.75 chr22 27034893 27035413 + 2 NA Intergenic AluSq2|SINE|Alu 25365 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 435.75-4 chr8 142929906 142930227 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -12223 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 283.5-13 chr3 117496756 117497031 + 2 NA Intergenic L2c|LINE|L2 194032 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 212-16 chr17 12732825 12733002 + 2 NA intron (NM_001146312, intron 5 of 13) intron (NM_001146312, intron 5 of 13) -26778 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 140-22 chr15 45766682 45766784 + 2 NA intron (NR_135680, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL 61538 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 235.5-15 chr12 29899816 29899944 + 2 NA Intergenic MIRb|SINE|MIR -115121 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 308.25-4 chr2 113875814 113876119 + 2 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -13968 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 277-9 chr15 69127656 69127813 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -32863 NM_001324091 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 145.25-29 chr15 92928665 92928880 + 2 NA intron (NM_001042572, intron 4 of 12) MER3|DNA|hAT-Charlie 24373 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 201.25-33 chr5 78885398 78885576 + 2 NA intron (NM_198709, intron 6 of 7) intron (NM_198709, intron 6 of 7) 99823 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 304.75-6 chr18 6734087 6734400 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -4381 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 244.5-32 chr5 92057935 92058197 + 2 NA Intergenic L1MC1|LINE|L1 -674749 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 157-36 chr22 28300101 28300261 + 2 NA intron (NM_001145418, intron 3 of 22) intron (NM_001145418, intron 3 of 22) -159688 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 201-31 chr3 32523528 32523695 + 2 NA Intergenic L1MCa|LINE|L1 -17222 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 251-26 chr5 164293241 164293398 + 2 NA Intergenic L1M5|LINE|L1 174083 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 435.75 chr15 91075638 91075989 + 2 NA Intergenic Intergenic -23775 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 196.5-9 chr1 119270332 119270498 + 2 NA intron (NR_125975, intron 6 of 6) intron (NR_125975, intron 6 of 6) -57837 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 251.5-32 chr7 151134046 151134232 + 2 NA intron (NM_001350103, intron 11 of 18) intron (NM_001350103, intron 11 of 18) 19501 NM_001308305 116988 Hs.647075 NM_031946 ENSG00000133612 AGAP3 AGAP-3|CENTG3|CRAG|MRIP-1|cnt-g3 ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 protein-coding 305.75-2 chr10 57005946 57006183 + 2 NA Intergenic L1MB8|LINE|L1 298495 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 307-12 chr5 39740261 39740532 + 2 NA Intergenic Intergenic 219965 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 228-20 chr18 47515737 47515954 + 2 NA intron (NR_147192, intron 1 of 2) L1ME1|LINE|L1 135349 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 406.5-2 chr3 113546260 113546526 + 2 NA intron (NM_001322297, intron 1 of 24) intron (NM_001322297, intron 1 of 24) 13838 NM_001322294 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 388-4 chr18 73160463 73160873 + 2 NA intron (NR_034133, intron 4 of 5) L1MB7|LINE|L1 103830 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 285-9 chr14 63615066 63615446 + 2 NA intron (NM_080666, intron 2 of 2) intron (NM_080666, intron 2 of 2) 26615 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 222-18 chr16 72515761 72515937 + 2 NA intron (NR_159371, intron 3 of 5) L1MB7|LINE|L1 149121 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 205-28 chr3 96766011 96766173 + 2 NA Intergenic L1M4b|LINE|L1 -48502 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 267-24 chr8 90476254 90476551 + 2 NA Intergenic Intergenic 129661 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 208.5-63 chr5 167979833 167980020 + 2 NA intron (NM_001368145, intron 3 of 26) X7A_LINE|LINE|CR1 -185919 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 331-17 chr8 135139048 135139357 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -94929 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 246-29 chr7 28196321 28196492 + 2 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -15611 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 156-47 chr3 168511930 168512060 + 2 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -39859 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 371.75-5 chr8 88918225 88918569 + 2 NA Intergenic Intergenic -590914 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 264-14 chr2 119342747 119342941 + 2 NA intron (NM_001322329, intron 1 of 6) AluSx|SINE|Alu 23898 NM_001322330 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 183.5-30 chr17 55312645 55312829 + 2 NA intron (NM_001330375, intron 2 of 3) intron (NM_001330375, intron 2 of 3) 46515 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 329.5-6 chr20 3443983 3444161 + 2 NA Intergenic L1MEg|LINE|L1 -26946 NM_001323332 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 355-4 chr18 66798472 66798875 + 2 NA Intergenic L1M4a2|LINE|L1 -194583 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 309-3 chr10 32461943 32462140 + 2 NA intron (NR_109827, intron 4 of 8) AluSp|SINE|Alu 15901 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 230.5-55 chr8 48807836 48808011 + 2 NA Intergenic L1MDa|LINE|L1 -72612 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 296-20 chr9 96542053 96542247 + 2 NA intron (NR_147239, intron 5 of 14) intron (NR_147239, intron 5 of 14) 24681 NM_001351569 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 160.5-2 chr1 195694179 195694300 + 2 NA Intergenic L1MA5|LINE|L1 394476 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 260-25 chr4 12396681 12396831 + 2 NA Intergenic MER20|DNA|hAT-Charlie 173305 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 290.75-8 chr4 42821106 42821351 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -72038 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 199.75-33 chr5 21091021 21091151 + 2 NA Intergenic LTR16D|LTR|ERVL -368394 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 270-29 chr8 138585103 138585274 + 2 NA Intergenic Intergenic -87458 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 261.5-10 chr16 12059702 12059879 + 2 NA intron (NM_032167, intron 8 of 20) intron (NM_032167, intron 8 of 20) 83056 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 126-4 chr1 210149056 210149172 + 2 NA intron (NM_153262, intron 6 of 7) L1MEd|LINE|L1 -83682 NM_019605 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 363-9 chr6 114490424 114490712 + 2 NA Intergenic Intergenic -427691 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 403.25-4 chr5 2352680 2353188 + 2 NA Intergenic Intergenic -40733 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 470.25 chr22 27118181 27118665 + 2 NA Intergenic L1MB7|LINE|L1 -57905 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 286.75-10 chr6 47930538 47930701 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 138070 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 460 chr11 90677906 90678221 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -122206 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 232.5-5 chr10 18872064 18872278 + 2 NA Intergenic Intergenic -176630 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 174-48 chr6 36496301 36496449 + 2 NA intron (NM_007271, intron 13 of 13) intron (NM_007271, intron 13 of 13) 51104 NM_001305102 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 283.25-13 chr5 83937760 83938027 + 2 NA Intergenic Intergenic -217038 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 247-10 chr16 49127325 49127545 + 2 NA Intergenic Intergenic 154403 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 153-31 chr3 135884842 135884959 + 2 NA Intergenic Intergenic -80828 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 315.25-6 chr19 36944630 36944917 + 2 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 28441 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 443.75-3 chr9 112622184 112622541 + 2 NA intron (NM_001287036, intron 3 of 4) intron (NM_001287036, intron 3 of 4) 95755 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 326-15 chr4 121518430 121518667 + 2 NA Intergenic Intergenic -137530 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 218.5-17 chr16 66301221 66301378 + 2 NA Intergenic L1ME3Cz|LINE|L1 -65392 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 149.5-30 chr13 105107369 105107529 + 2 NA Intergenic L1MC3|LINE|L1 -358418 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 233.75-34 chr7 103557286 103557450 + 2 NA intron (NM_005045, intron 37 of 64) intron (NM_005045, intron 37 of 64) -111161 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 151-72 chr9 69900003 69900143 + 2 NA intron (NM_001010940, intron 5 of 5) Tigger5b|DNA|TcMar-Tigger 79256 NM_001308086 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 285-19 chr5 179218515 179218808 + 2 NA intron (NM_014244, intron 3 of 21) intron (NM_014244, intron 3 of 21) 126800 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 241.5-25 chr3 77464614 77464938 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 366764 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 281.25-13 chr8 86355137 86355451 + 2 NA intron (NM_007013, intron 1 of 24) MIRb|SINE|MIR 12747 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 377 chr20 62391988 62392183 + 2 NA intron (NM_031215, intron 8 of 9) L2|LINE|L2 4982 NM_001024 6227 Hs.190968 NM_001024 ENSG00000171858 RPS21 HLDF|S21 ribosomal protein S21 protein-coding 244.5-5 chr10 119962663 119962866 + 2 NA Intergenic FLAM_C|SINE|Alu 4251 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 406-4 chr2 12368141 12368456 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 169168 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 336-9 chr20 54086464 54086842 + 2 NA Intergenic MIRb|SINE|MIR -15888 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 320.5-21 chrX 11572048 11572233 + 2 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 93780 NM_006125 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 164.5-99 chr8 137346730 137346865 + 2 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 66791 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 325.75-4 chr2 39048132 39048392 + 2 NA intron (NM_005633, intron 6 of 22) L1MEi|LINE|L1 72201 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 184.25-15 chr18 59638830 59639010 + 2 NA intron (NM_133459, intron 2 of 10) L1ME3D|LINE|L1 58503 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 173-4 chr1 197811918 197812104 + 2 NA Intergenic Intergenic -36531 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 361.5 chr1 77132270 77132616 + 2 NA intron (NM_005482, intron 9 of 10) L1MEg|LINE|L1 72300 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 184.5-18 chr12 5832787 5833097 + 2 NA intron (NM_001278596, intron 4 of 25) MIRb|SINE|MIR 112317 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 242 chr1 58040413 58040593 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 179922 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 363-4 chr11 92877605 92877844 + 2 NA intron (NM_001008781, intron 21 of 24) L1M6|LINE|L1 37904 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 211.5-51 chr7 35359398 35359537 + 2 NA intron (NR_038864, intron 2 of 2) L1M5|LINE|L1 45612 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 235.75-26 chr6 36220636 36220848 + 2 NA intron (NM_015695, intron 9 of 12) intron (NM_015695, intron 9 of 12) -22426 NM_001145716 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 267.5-14 chr2 54678127 54678354 + 2 NA Intergenic AluSz6|SINE|Alu -46772 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 268.75 chr1 65911031 65911165 + 2 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) -2147 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 351-11 chr8 122604732 122605050 + 2 NA Intergenic MIR|SINE|MIR -36247 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 335-3 chr12 14828702 14828933 + 2 NA 3' UTR (NM_021071, exon 3 of 3) 3' UTR (NM_021071, exon 3 of 3) -14635 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 282-9 chr13 79513531 79513753 + 2 NA intron (NM_019080, intron 1 of 7) intron (NM_019080, intron 1 of 7) -32411 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 294-13 chr3 153188021 153188392 + 2 NA Intergenic Intergenic 25980 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 286.5-16 chr7 18035829 18036005 + 2 NA Intergenic L1PB1|LINE|L1 -8071 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 190.75-45 chr6 19048062 19048227 + 2 NA Intergenic L1MC1|LINE|L1 132336 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 256.75-6 chr15 64478921 64479119 + 2 NA Intergenic Intergenic -20400 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 227 chr1 49406221 49406374 + 2 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 65788 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 396.75-2 chr18 9689772 9690256 + 2 NA Intergenic AluSx1|SINE|Alu -18287 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 358-6 chr5 3865175 3865556 + 2 NA Intergenic Intergenic 269533 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 309.5-14 chr5 29973592 29973845 + 2 NA Intergenic L1M2|LINE|L1 93158 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 263-3 chr1 208244833 208245072 + 2 NA promoter-TSS (NM_025179) promoter-TSS (NM_025179) -568 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 380.5-6 chr4 178466604 178466987 + 2 NA Intergenic Intergenic -558859 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 264.25-17 chr8 129630946 129631200 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 49166 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 339.5-2 chr12 37907538 37907838 + 2 NA Intergenic ALR/Alpha|Satellite|centr -409086 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 426 chr1 107226273 107226545 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 78340 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 354.5-5 chr5 29661989 29662343 + 2 NA Intergenic L1PA16|LINE|L1 -218394 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 334.75-3 chr12 58887939 58888312 + 2 NA intron (NM_153377, intron 7 of 18) intron (NM_153377, intron 7 of 18) 31421 NM_001136051 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 155-28 chr2 123297987 123298129 + 2 NA Intergenic Intergenic -224577 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 228-13 chr14 65681064 65681230 + 2 NA intron (NR_038167, intron 7 of 8) L2c|LINE|L2 210045 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 311-3 chr10 104088650 104088861 + 2 NA Intergenic MIRb|SINE|MIR -2875 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 175.5-68 chr6 129914816 129914994 + 2 NA Intergenic MIR|SINE|MIR -53590 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 205.5-41 chr3 152430330 152430496 + 2 NA intron (NM_207295, intron 2 of 7) intron (NM_207295, intron 2 of 7) -89423 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 227.75-18 chr4 30450822 30451015 + 2 NA Intergenic Intergenic -269451 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 255.25-18 chr3 151310513 151310745 + 2 NA intron (NM_023915, intron 1 of 2) intron (NM_023915, intron 1 of 2) 6191 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 403.25-5 chr6 22979007 22979310 + 2 NA Intergenic L1M5|LINE|L1 -261234 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 366.25-2 chr17 41557766 41558084 + 2 NA Intergenic Intergenic -3430 NR_038442 147093 Hs.680576 NR_038442 ENSG00000226629 LINC00974 - long intergenic non-protein coding RNA 974 ncRNA 293.25-6 chr13 42959300 42959553 + 2 NA intron (NM_033255, intron 5 of 10) Charlie22a|DNA|hAT-Charlie 32815 NM_001331228 94240 Hs.546467 NM_033255 ENSG00000133106 EPSTI1 BRESI1 epithelial stromal interaction 1 protein-coding 274-17 chr2 213468389 213468588 + 2 NA intron (NR_047660, intron 8 of 14) (AT)n|Simple_repeat|Simple_repeat 184024 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 305-13 chr3 25884746 25885000 + 2 NA Intergenic MER110A|LTR|ERV1 -11178 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 292.5-17 chr7 117244043 117244320 + 2 NA Intergenic AluSx|SINE|Alu 61500 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 197.25-16 chr11 106206008 106206262 + 2 NA Intergenic Intergenic -43884 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 312-5 chr15 85600992 85601245 + 2 NA intron (NM_007200, intron 8 of 36) intron (NM_007200, intron 8 of 36) -18832 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 593.5 chr18 73287397 73288076 + 2 NA Intergenic Intergenic -23238 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 251-32 chr8 118234800 118235197 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -123179 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 244-9 chr16 77515925 77516081 + 2 NA Intergenic Intergenic -80969 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 191.75-24 chr2 104682686 104682839 + 2 NA Intergenic Intergenic 74957 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 269.75-17 chr8 118364563 118364762 + 2 NA intron (NM_001363274, intron 4 of 4) MER5B|DNA|hAT-Charlie -252843 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 389.75-2 chr12 43064115 43064449 + 2 NA Intergenic Intergenic -91033 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 266.5-7 chr12 53931338 53931871 + 2 NA Intergenic Intergenic -7227 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 204.25-9 chr11 23239641 23239833 + 2 NA Intergenic Intergenic 179453 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 271-19 chr4 126193977 126194218 + 2 NA Intergenic L2a|LINE|L2 686838 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 243.5-30 chr9 9101831 9102034 + 2 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 243914 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 189.25-21 chr2 50436739 50436888 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -89057 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 233.25-24 chr4 26193420 26193610 + 2 NA Intergenic Intergenic -126195 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 129.25-2 chr1 98538623 98538831 + 2 NA Intergenic Intergenic -122994 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 330-7 chr22 40870926 40871170 + 2 NA intron (NM_022098, intron 2 of 9) intron (NM_022098, intron 2 of 9) -8935 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 317.75-4 chr7 25904174 25904514 + 2 NA Intergenic Intergenic 45642 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 192.75-45 chr8 76069851 76069955 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -336751 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 343.5-2 chr14 69708453 69708706 + 2 NA intron (NM_014734, intron 4 of 5) MIRb|SINE|MIR -58563 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 383-8 chr4 60558191 60558537 + 2 NA Intergenic Intergenic -364255 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 312-6 chr16 47730683 47730906 + 2 NA Intergenic Intergenic -127787 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 263-21 chr4 156390170 156390344 + 2 NA Intergenic Intergenic -436391 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 127.5-96 chr5 26806455 26806604 + 2 NA Intergenic L1MCa|LINE|L1 232057 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 354.5-3 chr4 693112 693342 + 2 NA Intergenic Intergenic -4076 NM_001294342 84179 Hs.567612 NM_032219 ENSG00000169026 SLC49A3 LP2561|MFSD7 solute carrier family 49 member 3 protein-coding 294.25-5 chr18 13729121 13729553 + 2 NA intron (NM_003799, intron 1 of 11) intron (NM_003799, intron 1 of 11) 2664 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 278-9 chr14 51295908 51296076 + 2 NA Intergenic Intergenic 32393 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 280.25-5 chr17 65208091 65208288 + 2 NA intron (NM_003835, intron 16 of 18) intron (NM_003835, intron 16 of 18) 70819 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 261.5-9 chr14 64383041 64383319 + 2 NA Intergenic L1M5|LINE|L1 -5173 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 549.5 chr21 34903935 34904391 + 2 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -15464 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 320.5-17 chr7 18222152 18222526 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -67753 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 434.5-3 chr17 60058177 60058540 + 2 NA intron (NM_022070, intron 11 of 19) intron (NM_022070, intron 11 of 19) -15253 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 143.75-89 chr9 119061383 119061462 + 2 NA Intergenic L1MDa|LINE|L1 308013 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 238.75-2 chr12 22360089 22360258 + 2 NA Intergenic Intergenic -25459 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 255.75-6 chr14 59758219 59758414 + 2 NA intron (NM_021136, intron 1 of 8) L2c|LINE|L2 -111296 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 178-39 chr4 85400380 85400530 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -74695 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 241-5 chr10 58189122 58189285 + 2 NA Intergenic Intergenic 78691 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 313.75-3 chr14 66699609 66699901 + 2 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 192348 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 305-14 chr3 136858628 136858830 + 2 NA intron (NR_110175, intron 1 of 3) intron (NR_110175, intron 1 of 3) 3334 NR_110177 101927597 Hs.559587 NR_110175 NCK1-DT NCK1-AS1|SLC35G2-AS1 NCK1 divergent transcript ncRNA 295.75-6 chr21 17538390 17538584 + 2 NA intron (NM_001207066, intron 1 of 7) intron (NM_001207066, intron 1 of 7) 25444 NM_001207064 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 380-7 chr8 88056149 88056400 + 2 NA exon (NM_005941, exon 8 of 10) exon (NM_005941, exon 8 of 10) -182259 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 140-10 chr11 22143813 22143943 + 2 NA Intergenic MIR|SINE|MIR -49207 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 244.5-41 chr8 90937004 90937226 + 2 NA intron (NM_022351, intron 9 of 12) intron (NM_022351, intron 9 of 12) 47962 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 314.5-6 chr2 139893789 139894000 + 2 NA Intergenic Intergenic 692791 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 162.75-10 chr10 70413060 70413216 + 2 NA intron (NM_004096, intron 1 of 2) HAL1ME|LINE|L1 8993 NM_004096 1979 Hs.621200 NM_004096 ENSG00000148730 EIF4EBP2 4EBP2|PHASII eukaryotic translation initiation factor 4E binding protein 2 protein-coding 362.5-3 chr1 234285385 234285735 + 2 NA intron (NM_173508, intron 3 of 7) intron (NM_173508, intron 3 of 7) -20907 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 347-4 chr4 61931386 61931601 + 2 NA intron (NM_001322246, intron 12 of 25) MIR|SINE|MIR 230272 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 279.5-4 chr12 25692918 25693211 + 2 NA Intergenic MLT2B4|LTR|ERVL -44486 NM_001352232 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 282-5 chr10 28216959 28217148 + 2 NA intron (NR_134517, intron 2 of 16) intron (NR_134517, intron 2 of 16) 65070 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 124-40 chr3 43312499 43312567 + 2 NA intron (NM_001100594, intron 2 of 5) L1MD2|LINE|L1 25993 NM_017719 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 284-8 chr12 66995832 66996031 + 2 NA Intergenic L1MB8|LINE|L1 100353 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 209-15 chr2 164534140 164534267 + 2 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 34292 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 233.5-10 chr11 79466047 79466225 + 2 NA Intergenic L1ME4a|LINE|L1 -25106 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 258-31 chr7 126358840 126359112 + 2 NA Intergenic Intergenic 699208 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 223.75-15 chr3 25894259 25894420 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -20644 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 306-21 chr8 59997882 59998151 + 2 NA Intergenic L2|LINE|L2 283384 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 265.5-17 chr3 106707948 106708333 + 2 NA Intergenic Intergenic 532498 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 259-34 chrX 123481868 123482031 + 2 NA intron (NM_007325, intron 14 of 15) intron (NM_007325, intron 14 of 15) 251103 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 172-32 chr4 103477570 103477689 + 2 NA Intergenic Intergenic 52587 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 234.5-22 chr2 69745848 69746041 + 2 NA intron (NM_001320700, intron 1 of 12) intron (NM_001320700, intron 1 of 12) 3810 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 366.5-5 chr20 15450419 15450624 + 2 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 253681 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 268.25-8 chr2 97684687 97684915 + 2 NA intron (NR_038386, intron 5 of 9) L1MB4|LINE|L1 15058 NM_001351368 728537 Hs.469369 NM_001351368 ENSG00000228486 C2orf92 LINC01125 chromosome 2 open reading frame 92 protein-coding 268-5 chr11 71447652 71447854 + 2 NA intron (NM_001163817, intron 1 of 8) intron (NM_001163817, intron 1 of 8) 640 NM_001163817 1717 Hs.503134 NM_001360 ENSG00000172893 DHCR7 SLOS 7-dehydrocholesterol reductase protein-coding 363-7 chr20 12977893 12978197 + 2 NA Intergenic L1ME2|LINE|L1 -25526 NR_109868 101929486 Hs.548761 NR_109868 ENSG00000233048 LINC01722 - long intergenic non-protein coding RNA 1722 ncRNA 144.75-11 chr10 28383001 28383118 + 2 NA Intergenic MER33|DNA|hAT-Charlie -79995 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 241-24 chr3 30097937 30098179 + 2 NA Intergenic Intergenic -163902 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 347.25-9 chr7 141011054 141011308 + 2 NA intron (NM_053035, intron 1 of 2) LFSINE_Vert|SINE|tRNA 3498 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 233-24 chr4 106287091 106287241 + 2 NA intron (NM_001290768, intron 3 of 26) intron (NM_001290768, intron 3 of 26) -28444 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 137.5-37 chr15 69259160 69259237 + 2 NA intron (NM_001324091, intron 3 of 4) L1PREC2|LINE|L1 -39714 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 287-10 chr20 43250876 43251041 + 2 NA Intergenic Intergenic -61052 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 234.75-22 chr2 134353319 134353540 + 2 NA intron (NM_001371457, intron 10 of 16) intron (NM_001371457, intron 10 of 16) 99357 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 242.5-20 chr2 229360615 229360797 + 2 NA intron (NM_139072, intron 12 of 12) intron (NM_139072, intron 12 of 12) -89419 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 387.5-5 chr21 28601959 28602429 + 2 NA Intergenic Intergenic 62876 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 222-39 chr6 123150334 123150516 + 2 NA Intergenic Intergenic 154190 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 327.5 chr10 82612554 82612738 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -379726 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 158.5-105 chr8 137088619 137088698 + 2 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat 324930 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 291.25-2 chr1 89100728 89101065 + 2 NA Intergenic MER89-int|LTR|ERV1 25218 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 182-31 chr22 48126780 48126906 + 2 NA Intergenic L1ME3F|LINE|L1 -147521 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 190-45 chr7 12333545 12333685 + 2 NA intron (NM_001135924, intron 27 of 28) intron (NM_001135924, intron 27 of 28) 70250 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 399.5-2 chr2 8874159 8874709 + 2 NA intron (NR_135606, intron 7 of 12) intron (NR_135606, intron 7 of 12) -36821 NM_001348742 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 217-12 chr2 41152070 41152207 + 2 NA Intergenic L3|LINE|CR1 -639703 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 402 chr2 180886500 180886942 + 2 NA intron (NR_104324, intron 4 of 4) L1MA4A|LINE|L1 -93664 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 278-8 chr13 45632020 45632183 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -16362 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 302-2 chr11 15463176 15463378 + 2 NA Intergenic Intergenic -180608 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 245-15 chr2 127043253 127043448 + 2 NA Intergenic Intergenic 38715 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 395-2 chr11 91821853 91822120 + 2 NA Intergenic Intergenic -403048 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 289.75-21 chr4 115576858 115577118 + 2 NA Intergenic Intergenic -463368 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 213-13 chr12 86284597 86284796 + 2 NA intron (NM_001351286, intron 4 of 7) Tigger13a|DNA|TcMar-Tigger -27397 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 464 chr13 69938368 69938661 + 2 NA intron (NM_001286725, intron 3 of 9) intron (NM_001286725, intron 3 of 9) -168699 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 210-40 chr8 99376917 99377072 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 159736 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 403.75 chr6 19592790 19593061 + 2 NA Intergenic Intergenic 143104 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 393.25 chr11 107613608 107613877 + 2 NA intron (NM_001308018, intron 1 of 12) intron (NM_001308018, intron 1 of 12) 22595 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 171-5 chr1 69024004 69024118 + 2 NA Intergenic L1M5|LINE|L1 -31837 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 288-5 chr14 71906812 71907017 + 2 NA Intergenic Intergenic -25257 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 245.25 chr1 92174827 92174964 + 2 NA intron (NM_015237, intron 2 of 6) intron (NM_015237, intron 2 of 6) 5971 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 208-3 chr1 174944675 174944805 + 2 NA intron (NR_121196, intron 3 of 5) intron (NR_121196, intron 3 of 5) 9521 NR_121196 101928696 Hs.666680 NR_121196 ENSG00000229531 LOC101928696 - uncharacterized LOC101928696 ncRNA 291.25-9 chr17 57795899 57796110 + 2 NA Intergenic L1MEc|LINE|L1 -50705 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 183-5 chr1 229526339 229526501 + 2 NA intron (NM_012089, intron 9 of 12) intron (NM_012089, intron 9 of 12) 17990 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 247.25-17 chr20 18582884 18583053 + 2 NA Intergenic L1MB2|LINE|L1 -5086 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 361.75-3 chr2 196649729 196649949 + 2 NA intron (NM_001353339, intron 2 of 22) L1MA7|LINE|L1 10124 NM_001080539 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 258.5-6 chr17 4230765 4230927 + 2 NA intron (NR_047571, intron 2 of 23) L1MC4a|LINE|L1 33001 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 171-42 chr4 79082744 79082875 + 2 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 111061 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 255.75-17 chr20 45542637 45542978 + 2 NA exon (NM_001302861, exon 3 of 4) exon (NM_001302861, exon 3 of 4) -3325 NM_080827 140870 Hs.673237 NM_080827 ENSG00000243543 WFDC6 C20orf171|HEL-S-295|WAP6|dJ461P17.11 WAP four-disulfide core domain 6 protein-coding 363.5-5 chr19 43642712 43642923 + 2 NA Intergenic Intergenic -2967 NM_145296 199731 Hs.370984 NM_145296 ENSG00000105767 CADM4 IGSF4C|NECL4|Necl-4|TSLL2|synCAM4 cell adhesion molecule 4 protein-coding 467.5-2 chr13 54238488 54238974 + 2 NA Intergenic Intergenic 73317 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 348-9 chr4 148245469 148245669 + 2 NA intron (NM_000901, intron 3 of 8) MIRb|SINE|MIR 196845 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 247.25-2 chr10 103822200 103822352 + 2 NA intron (NM_014631, intron 1 of 13) intron (NM_014631, intron 1 of 13) 33130 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 263.75-11 chr5 7514274 7514463 + 2 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 118230 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 241-12 chr15 36372082 36372343 + 2 NA Intergenic L2a|LINE|L2 -207414 NM_001321760 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 244-23 chr7 18649929 18650076 + 2 NA intron (NM_058176, intron 10 of 22) intron (NM_058176, intron 10 of 22) 140732 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 320.25-9 chr4 38735924 38736208 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 46924 NM_030956 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 414.25 chr2 116391880 116392218 + 2 NA Intergenic L1MEd|LINE|L1 1048234 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 198.5-12 chr13 94512755 94512885 + 2 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) -33138 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 246-40 chr9 88146438 88146586 + 2 NA Intergenic Intergenic -8031 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 150.25-13 chr11 86794508 86794593 + 2 NA intron (NM_001293180, intron 1 of 1) intron (NM_001293180, intron 1 of 1) 3479 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 283.25-9 chr2 171307141 171307410 + 2 NA Intergenic L1MB3|LINE|L1 -75982 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 187-33 chr21 24244173 24244294 + 2 NA Intergenic Intergenic 77144 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 272.5-12 chr3 106744975 106745199 + 2 NA Intergenic Intergenic 495551 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 158.75-11 chr11 98179078 98179184 + 2 NA Intergenic Intergenic -841818 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 249 chr1 70538710 70538922 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron 127548 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 402.75 chr11 33219923 33220361 + 2 NA Intergenic L1ME4c|LINE|L1 -36530 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 238-19 chr2 23013306 23013438 + 2 NA Intergenic Intergenic -371807 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 238.75-12 chr3 56751436 56751635 + 2 NA intron (NM_001128615, intron 7 of 12) intron (NM_001128615, intron 7 of 12) 24182 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 227.75-19 chr5 59874484 59874729 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 19120 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 203.25-8 chr10 133100727 133100976 + 2 NA intron (NM_001083909, intron 4 of 6) intron (NM_001083909, intron 4 of 6) -1395 NM_001291085 84435 Hs.435183 NM_032422 ENSG00000197177 ADGRA1 GPR123 adhesion G protein-coupled receptor A1 protein-coding 422 chr11 102101525 102101832 + 2 NA Intergenic Intergenic -8769 NM_001282098 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 347.5-4 chr12 124668753 124669195 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -101362 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 220.5 chr1 38846499 38846656 + 2 NA intron (NM_022157, intron 5 of 6) intron (NM_022157, intron 5 of 6) 13195 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 221.5-35 chr5 31060163 31060398 + 2 NA Intergenic Intergenic -133406 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 256.5-22 chr2 186672784 186673014 + 2 NA intron (NM_001145000, intron 24 of 27) L1MB7|LINE|L1 -21161 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 255-28 chr8 134642157 134642459 + 2 NA intron (NM_020863, intron 2 of 15) MIRc|SINE|MIR 44237 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 187.75-30 chr22 25641728 25641928 + 2 NA intron (NM_001362778, intron 2 of 19) L2a|LINE|L2 77153 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 150-51 chr3 114018992 114019073 + 2 NA intron (NR_148531, intron 5 of 14) intron (NR_148531, intron 5 of 14) 37494 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 207.5-40 chr3 94888878 94889029 + 2 NA Intergenic HERVL-int|LTR|ERVL -49310 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 315.25-9 chr22 20862233 20862401 + 2 NA intron (NM_004782, intron 1 of 4) intron (NM_004782, intron 1 of 4) 3310 NM_004782 9342 Hs.108002 NM_004782 ENSG00000099940 SNAP29 CEDNIK|SNAP-29 synaptosome associated protein 29 protein-coding 147.75-43 chr21 18890307 18890413 + 2 NA Intergenic L1MC|LINE|L1 -130548 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 195.5-30 chr15 69660140 69660306 + 2 NA intron (NR_126437, intron 3 of 5) L2|LINE|L2 68023 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 752.25 chr2 68586818 68587637 + 2 NA Intergenic Intergenic -56361 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 377.25 chr10 35351702 35352092 + 2 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 15023 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 164-20 chr14 65641309 65641413 + 2 NA intron (NM_004480, intron 5 of 9) L1ME1|LINE|L1 170259 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 312.5-18 chrX 96328649 96328878 + 2 NA Intergenic L1ME4a|LINE|L1 9139 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 218-36 chr5 23335396 23335550 + 2 NA Intergenic Intergenic -172136 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 150-54 chr4 30563330 30563450 + 2 NA Intergenic L1MA6|LINE|L1 -156979 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 452-2 chr3 73081829 73082301 + 2 NA Intergenic U13_|snRNA|snRNA 20406 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 376-2 chr16 68921941 68922272 + 2 NA intron (NM_024562, intron 12 of 17) intron (NM_024562, intron 12 of 17) 78575 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 316-16 chr5 36810661 36810867 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 65930 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 231.25-9 chr12 15237260 15237544 + 2 NA Intergenic MIR3|SINE|MIR -15985 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 286.75-8 chr4 167367127 167367411 + 2 NA Intergenic Intergenic -132679 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 441.5-3 chr5 39368751 39369239 + 2 NA Intergenic Intergenic -4500 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 272-22 chr6 62186056 62186215 + 2 NA intron (NR_146874, intron 1 of 13) MIRb|SINE|MIR 100090 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 299-7 chr18 3808130 3808307 + 2 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 37140 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 209-38 chr8 119961648 119961799 + 2 NA intron (NM_022783, intron 3 of 8) MIR3|SINE|MIR 88001 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 369.75-6 chr2 99825608 99825851 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 279854 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 372-6 chr5 45330832 45331176 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 365376 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 238-5 chr10 28851101 28851220 + 2 NA intron (NM_001278522, intron 3 of 4) intron (NM_001278522, intron 3 of 4) 4752 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 294.5-15 chr6 8152202 8152366 + 2 NA Intergenic Intergenic -49689 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 313-4 chr12 80071091 80071264 + 2 NA Intergenic Intergenic -28360 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 156-50 chr4 146108999 146109107 + 2 NA TTS (NR_038331) TTS (NR_038331) 12860 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 218-23 chr2 146869803 146870024 + 2 NA Intergenic Intergenic 282856 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 234-40 chr8 16605472 16605703 + 2 NA Intergenic Intergenic 396758 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 141.25-9 chr10 48560644 48560893 + 2 NA intron (NR_144642, intron 2 of 9) L1ME1|LINE|L1 44305 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 279.75-13 chr8 133336821 133337023 + 2 NA Intergenic MER20|DNA|hAT-Charlie -39618 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 189-30 chr20 46687183 46687300 + 2 NA intron (NM_033550, intron 1 of 1) intron (NM_033550, intron 1 of 1) 2203 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 298-7 chr13 56266634 56266838 + 2 NA Intergenic L1MC1|LINE|L1 -874182 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 248-11 chr2 133218084 133218286 + 2 NA intron (NM_207481, intron 4 of 17) Charlie1b|DNA|hAT-Charlie -48010 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 239 chr1 94518658 94518864 + 2 NA TTS (NM_002858) TTS (NM_002858) 22998 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 245.5-32 chr5 51187405 51187731 + 2 NA Intergenic Intergenic 195764 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 254.25-9 chr19 28619614 28620052 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 13145 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 439-4 chr8 131467441 131467826 + 2 NA Intergenic Intergenic -426724 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 231.75-19 chr3 99330335 99330598 + 2 NA Intergenic Intergenic -308128 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 189.5-20 chr17 29891323 29891500 + 2 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -38492 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 426.75-2 chr8 81070576 81070971 + 2 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 41295 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 384.75-3 chr15 59020373 59020748 + 2 NA intron (NM_001270530, intron 1 of 13) intron (NM_001270530, intron 1 of 13) 32414 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 205.5-20 chr16 73401971 73402149 + 2 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 15255 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 195 chr1 60567149 60567287 + 2 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 55467 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 288.25-8 chr2 123284759 123285068 + 2 NA Intergenic L1MD|LINE|L1 -211432 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 427.5-3 chr6 154079713 154080070 + 2 NA intron (NM_001285522, intron 1 of 1) Arthur1|DNA|hAT-Tip100 -6616 NM_001285526 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 170-2 chr10 67670246 67670403 + 2 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) -4639 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 187.5-39 chr2 137168420 137168530 + 2 NA intron (NM_001316349, intron 6 of 27) intron (NM_001316349, intron 6 of 27) 402930 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 391.75 chr5 7570221 7570460 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 174202 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 254-16 chr6 22720783 22721020 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -2977 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 216.5-9 chr12 38454085 38454252 + 2 NA Intergenic Intergenic 137394 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 235.5-29 chr20 13215373 13215612 + 2 NA Intergenic Intergenic -5782 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 290.25 chr1 65174777 65174995 + 2 NA intron (NM_001330616, intron 1 of 4) MIR|SINE|MIR 25892 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 340-5 chr2 99505433 99505620 + 2 NA Intergenic Intergenic -15509 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 272-11 chr17 28970213 28970486 + 2 NA intron (NM_001290202, intron 3 of 16) MIR3|SINE|MIR -18831 NM_001033561 57649 Hs.444173 NM_020889 ENSG00000109118 PHF12 PF1 PHD finger protein 12 protein-coding 166.25-7 chr10 96298704 96298815 + 2 NA Intergenic Intergenic -5675 NM_004088 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 303.75-7 chr6 121188784 121189084 + 2 NA intron (NM_001367759, intron 23 of 33) intron (NM_001367759, intron 23 of 33) 145546 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 379-2 chr12 81315013 81315325 + 2 NA intron (NM_001220474, intron 20 of 30) intron (NM_001220474, intron 20 of 30) 35980 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 267.25-16 chr8 88036492 88036833 + 2 NA 3' UTR (NM_005941, exon 10 of 10) 3' UTR (NM_005941, exon 10 of 10) -162647 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 293.5-5 chr12 29077812 29078066 + 2 NA Intergenic HAL1b|LINE|L1 -71339 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 236.5-23 chr19 23626634 23626898 + 2 NA Intergenic LTR43|LTR|ERV1 60446 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 385-8 chr6 77971412 77971660 + 2 NA Intergenic L1PA16|LINE|L1 318497 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 381.5-3 chr7 146830784 146831153 + 2 NA intron (NM_014141, intron 1 of 22) Plat_L3|LINE|CR1 56697 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 291.75-6 chr16 78966880 78967177 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 633709 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 252.5-5 chr12 46818740 46818994 + 2 NA intron (NM_018018, intron 1 of 16) intron (NM_018018, intron 1 of 16) 7130 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 176.75-30 chr22 31783994 31784147 + 2 NA intron (NR_146296, intron 9 of 42) intron (NR_146296, intron 9 of 42) 30047 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 276.25-2 chr11 56141635 56141904 + 2 NA Intergenic Intergenic -4051 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 152.75-62 chr8 88597894 88597998 + 2 NA Intergenic Intergenic -270463 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 440.75-4 chr8 95201563 95201844 + 2 NA Intergenic Intergenic 14671 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 308.5-9 chr2 119582817 119583033 + 2 NA intron (NR_073132, intron 6 of 24) L1ME3C|LINE|L1 38476 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 179.5-68 chr3 190752565 190752749 + 2 NA Intergenic L1MC1|LINE|L1 110037 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 311.25-12 chr8 74965644 74965951 + 2 NA Intergenic Intergenic -18708 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 236.25-18 chr2 145179697 145179872 + 2 NA Intergenic Intergenic 511817 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 300.5-21 chr8 107289499 107289753 + 2 NA intron (NM_001199859, intron 6 of 8) intron (NM_001199859, intron 6 of 8) 46889 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 301.5-2 chr1 211331440 211331643 + 2 NA intron (NM_001319207, intron 1 of 10) intron (NM_001319207, intron 1 of 10) 4708 NM_001033910 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 178.75-38 chr3 96704707 96704836 + 2 NA Intergenic Intergenic -109823 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 204-10 chr11 38592307 38592441 + 2 NA Intergenic Helitron2Na_Mam|RC?|Helitron? 53982 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 385-4 chr2 56230350 56230692 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -44751 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 254-21 chr7 150740285 150740435 + 2 NA intron (NM_001303630, intron 3 of 4) intron (NM_001303630, intron 3 of 4) 3012 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 239.25-29 chr8 124669256 124669459 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 59116 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 423-4 chr7 47434969 47435232 + 2 NA intron (NM_022748, intron 8 of 30) intron (NM_022748, intron 8 of 30) 29703 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 270-28 chr8 114268719 114268882 + 2 NA Intergenic Intergenic -831861 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 318.5-6 chr12 12918442 12918701 + 2 NA Intergenic AluJo|SINE|Alu 2742 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 211-30 chr7 3479014 3479207 + 2 NA intron (NM_152744, intron 1 of 44) L1MEd|LINE|L1 177858 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 411.5-3 chr6 132528079 132528463 + 2 NA Intergenic MER57-int|LTR|ERV1 -10017 NM_175057 134860 Hs.434116 NM_175057 ENSG00000237110 TAAR9 TA3|TAR3|TAR9|TRAR3 trace amine associated receptor 9 (gene/pseudogene) protein-coding 286-21 chr5 170350838 170351041 + 2 NA Intergenic L2a|LINE|L2 -2548 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 308.5-11 chr20 57203837 57204218 + 2 NA intron (NM_001719, intron 2 of 6) MIRb|SINE|MIR -9669 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 298.5-19 chr7 43885598 43885780 + 2 NA intron (NM_001077663, intron 3 of 5) intron (NM_001077663, intron 3 of 5) -16172 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 417-3 chr2 14910146 14910429 + 2 NA Intergenic MIRc|SINE|MIR 277570 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 528.75 chr12 39292667 39293232 + 2 NA TTS (NM_001173463) TTS (NM_001173463) 150171 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 349-10 chr5 113013795 113014014 + 2 NA non-coding (NR_038352, exon 9 of 9) non-coding (NR_038352, exon 9 of 9) 37106 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 328.25-13 chr6 157708622 157708854 + 2 NA Intergenic LTR8A|LTR|ERV1 -114508 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 132-73 chr8 57932174 57932257 + 2 NA Intergenic Intergenic -46143 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 213.5-12 chr12 100429623 100429740 + 2 NA Intergenic Intergenic -44185 NM_001206978 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 258-9 chr11 115019964 115020209 + 2 NA Intergenic Intergenic -313491 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 561 chr5 123695230 123695729 + 2 NA Intergenic Intergenic 150062 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 216.5-45 chr9 27051709 27051890 + 2 NA intron (NM_025103, intron 16 of 19) L1MB2|LINE|L1 -46127 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 175.5-85 chr8 137173639 137173900 + 2 NA Intergenic Intergenic 239819 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 407.25-4 chr2 197828887 197829245 + 2 NA intron (NM_006226, intron 1 of 5) MER53|DNA|hAT 24473 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 482-2 chr21 37022058 37022310 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 15482 NM_018962 53820 Hs.254560 NM_018962 ENSG00000183145 RIPPLY3 DSCR6 ripply transcriptional repressor 3 protein-coding 297-7 chr11 97997257 97997551 + 2 NA Intergenic Intergenic -1023545 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 213-27 chr20 13570673 13570836 + 2 NA intron (NM_017714, intron 6 of 13) intron (NM_017714, intron 6 of 13) 68178 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 327.5-2 chr11 112669880 112670082 + 2 NA Intergenic L1ME3B|LINE|L1 -114179 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 293-22 chr8 132397355 132397653 + 2 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 49758 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 301-16 chr18 74366563 74366762 + 2 NA Intergenic Intergenic -42786 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 390.25-3 chr7 122474072 122474353 + 2 NA intron (NM_001167940, intron 13 of 29) intron (NM_001167940, intron 13 of 29) -169462 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 161-21 chr12 71302899 71302985 + 2 NA Intergenic Intergenic -136856 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 221-5 chr10 12725155 12725295 + 2 NA TTS (NR_031752) TTS (NR_031752) 128 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 255.25-16 chr22 40749733 40749959 + 2 NA Intergenic LTR24C|LTR|ERV1 64112 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 323.25-9 chr4 48362024 48362297 + 2 NA intron (NM_020846, intron 1 of 7) L1MEc|LINE|L1 20631 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 425.5 chr10 88134278 88134586 + 2 NA Intergenic (CACCAT)n|Simple_repeat|Simple_repeat 270807 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 318-21 chr6 100786248 100786479 + 2 NA intron (NM_006828, intron 8 of 41) intron (NM_006828, intron 8 of 41) 94966 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 165.75-34 chr2 119969832 119969983 + 2 NA intron (NM_002830, intron 26 of 26) L1MC5|LINE|L1 -43170 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 356.25-10 chr6 8633566 8633898 + 2 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -18477 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 160.75-63 chr7 88073207 88073366 + 2 NA intron (NM_001324421, intron 3 of 28) MLT1L|LTR|ERVL-MaLR 139035 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 264.25-13 chr5 58248919 58249106 + 2 NA Intergenic Intergenic -126671 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 402-3 chr6 49178002 49178285 + 2 NA Intergenic Intergenic 285110 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 357.75-5 chr14 67604690 67605356 + 2 NA Intergenic L1M5|LINE|L1 -4722 NM_001363694 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 438.5-2 chr14 81729877 81730221 + 2 NA Intergenic Intergenic 13089 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 254.25-7 chr13 20649925 20650109 + 2 NA intron (NR_148462, intron 22 of 28) L1MB4|LINE|L1 -53326 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 414.75-5 chr3 102110147 102110555 + 2 NA Intergenic Intergenic -53354 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 362.25 chr1 113956569 113956802 + 2 NA exon (NM_181358, exon 4 of 14) exon (NM_181358, exon 4 of 14) 2808 NM_181358 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 252-6 chr12 132429265 132429523 + 2 NA Intergenic Intergenic -60757 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 278.75-5 chr16 87443189 87443436 + 2 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 48542 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 354-8 chr4 76841286 76841548 + 2 NA Intergenic L1MEc|LINE|L1 56727 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 344-8 chr5 84227679 84227990 + 2 NA intron (NM_001278642, intron 2 of 9) L1PA16|LINE|L1 157033 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 193.25-28 chr4 30868017 30868194 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 147736 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 170.25-18 chr14 46055453 46055557 + 2 NA Intergenic Intergenic -8654 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 260-13 chr2 14139261 14139428 + 2 NA Intergenic L1M4|LINE|L1 261614 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 255.5-31 chr8 120878381 120878604 + 2 NA Intergenic L2c|LINE|L2 -66446 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 290.5-26 chr8 141654773 141655014 + 2 NA Intergenic L1MDa|LINE|L1 131420 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 311-13 chr4 127204889 127205165 + 2 NA Intergenic Intergenic -427930 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 154-61 chr7 29243483 29243594 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -34568 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 218.5-10 chr11 72147174 72147313 + 2 NA Intergenic MER72B|LTR|ERV1 11518 NM_001318045 2352 Hs.352 NM_000804 ENSG00000110203 FOLR3 FR-G|FR-gamma|FRgamma|gamma-hFR folate receptor gamma protein-coding 314.5-12 chr8 6704529 6704786 + 2 NA intron (NR_125386, intron 1 of 4) MSTA|LTR|ERVL-MaLR 3552 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 291.25-21 chr9 29289948 29290114 + 2 NA Intergenic LTR16E2|LTR|ERVL -76430 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 267.75-18 chr8 55881079 55881257 + 2 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) 1333 NM_002350 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 220.5-34 chr4 28091851 28092054 + 2 NA Intergenic Intergenic -727630 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 229.5-25 chr18 13855268 13855455 + 2 NA Intergenic L1MCc|LINE|L1 31212 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 454 chr4 13702381 13702783 + 2 NA intron (NR_121681, intron 2 of 3) MIR3|SINE|MIR 47403 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 156.5-67 chr6 66753206 66753306 + 2 NA Intergenic Intergenic 965377 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 406.5-5 chr8 92571197 92571526 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 84133 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 167.5-60 chr4 32373604 32373704 + 2 NA Intergenic Intergenic 22616 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 341-7 chr6 96922535 96922737 + 2 NA intron (NM_001323258, intron 2 of 7) intron (NM_001323258, intron 2 of 7) -1984 NM_001323253 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 285.25-6 chr11 47791832 47792213 + 2 NA intron (NM_015231, intron 28 of 35) intron (NM_015231, intron 28 of 35) -24681 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 304.25-9 chr20 5828489 5828759 + 2 NA intron (NM_001303478, intron 3 of 3) intron (NM_001303478, intron 3 of 3) 78223 NM_001303479 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 290.5-28 chr9 104744822 104745113 + 2 NA Intergenic L1ME3D|LINE|L1 -2716 NM_001329570 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 200-23 chr19 30269761 30269880 + 2 NA Intergenic Intergenic -102564 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 300.5-2 chr12 54532006 54532276 + 2 NA intron (NM_001184976, intron 25 of 30) intron (NM_001184976, intron 25 of 30) -17252 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 222.75-35 chr5 5826842 5826995 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 404241 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 279-11 chr2 152613868 152614047 + 2 NA intron (NM_052905, intron 11 of 25) intron (NM_052905, intron 11 of 25) 103504 NM_001365601 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 489-2 chr4 47953173 47953822 + 2 NA intron (NM_000087, intron 3 of 10) intron (NM_000087, intron 3 of 10) 28036 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 337.5-4 chr2 35921740 35921928 + 2 NA Intergenic HERV16-int|LTR|ERVL 433736 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 317.5-8 chr5 77404248 77404603 + 2 NA intron (NM_001029851, intron 8 of 18) AluSp|SINE|Alu 87891 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 276.75-9 chr16 8071849 8072129 + 2 NA Intergenic Intergenic 517849 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 274.25-16 chr7 52966442 52966713 + 2 NA Intergenic Intergenic -69056 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 310-18 chr5 91641127 91641453 + 2 NA Intergenic Intergenic -257973 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 213-29 chr22 26534964 26535161 + 2 NA intron (NM_003595, intron 4 of 6) intron (NM_003595, intron 4 of 6) 20261 NR_031615 100313914 NR_031615 ENSG00000221760 MIR548J MIRN548J|hsa-mir-548j microRNA 548j ncRNA 161.75-14 chr13 38710336 38710538 + 2 NA intron (NM_207361, intron 2 of 23) intron (NM_207361, intron 2 of 23) 23360 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 CRYPTOP|FRASRS2 FRAS1 related extracellular matrix 2 protein-coding 235.5-34 chr3 118743851 118744088 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 66864 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 287.5-26 chr6 161452725 161453008 + 2 NA intron (NM_004562, intron 9 of 11) (TC)n|Simple_repeat|Simple_repeat -18111 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 339.75-12 chr4 132665227 132665544 + 2 NA intron (NR_126401, intron 3 of 3) intron (NR_126401, intron 3 of 3) 74296 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 398-3 chr8 20217707 20217932 + 2 NA intron (NM_001693, intron 12 of 13) intron (NM_001693, intron 12 of 13) 20438 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 270.25-5 chr14 70811174 70811399 + 2 NA Intergenic Intergenic -1773 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 311-11 chr4 64560137 64560450 + 2 NA Intergenic L1M5|LINE|L1 -150833 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 301.5-16 chr6 131244920 131245107 + 2 NA intron (NM_016377, intron 7 of 7) intron (NM_016377, intron 7 of 7) -5391 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 257.25-4 chr10 89394059 89394260 + 2 NA intron (NM_001270930, intron 2 of 2) Tigger3a|DNA|TcMar-Tigger 1536 NM_001270929 3434 Hs.20315 NM_001548 ENSG00000185745 IFIT1 C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561 interferon induced protein with tetratricopeptide repeats 1 protein-coding 274-22 chr3 176404890 176405050 + 2 NA Intergenic L1MC5a|LINE|L1 -110133 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 208-34 chr5 66970702 66970855 + 2 NA intron (NM_001290226, intron 1 of 26) MIR|SINE|MIR 11705 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 274-5 chr1 166467417 166467619 + 2 NA Intergenic MIRb|SINE|MIR 22521 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 365.25 chr10 22835862 22836086 + 2 NA Intergenic Intergenic -92050 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 271-13 chr2 116483460 116483706 + 2 NA Intergenic L1ME3B|LINE|L1 1139768 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209.5-25 chr3 24201232 24201402 + 2 NA intron (NM_001354714, intron 2 of 8) intron (NM_001354714, intron 2 of 8) 49993 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 280.5-20 chr3 124239308 124239463 + 2 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) 106456 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 315-4 chr15 54665873 54666170 + 2 NA Intergenic MIRb|SINE|MIR -390726 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 233.25-36 chr8 108653754 108653895 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 133770 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 309-5 chr11 45487112 45487342 + 2 NA Intergenic MLT2B4|LTR|ERVL 115830 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 246-23 chr5 131670930 131671150 + 2 NA intron (NM_133372, intron 14 of 17) intron (NM_133372, intron 14 of 17) -35811 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 216-12 chr13 64238125 64238257 + 2 NA Intergenic Intergenic -162180 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 297.25-5 chr10 33208554 33208853 + 2 NA intron (NM_001244973, intron 9 of 16) MIR|SINE|MIR -91896 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 480 chr5 106866228 106866573 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 144614 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 263.25-3 chr10 57873424 57873606 + 2 NA Intergenic Intergenic 394379 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 335.5-11 chr8 115707986 115708280 + 2 NA Intergenic L1ME3B|LINE|L1 -39158 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 277-18 chr4 23363131 23363363 + 2 NA Intergenic Intergenic 518045 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 236.5-14 chr12 111238466 111238597 + 2 NA intron (NM_015267, intron 3 of 21) MIR|SINE|MIR -65611 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 171-57 chr8 92856254 92856343 + 2 NA Intergenic Intergenic -70238 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 334.25-12 chr8 121449036 121449276 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -190190 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 205-24 chr2 161640112 161640254 + 2 NA intron (NM_001354451, intron 1 of 25) L1MC4a|LINE|L1 15767 NM_001354446 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 229-18 chr2 166588875 166589025 + 2 NA Intergenic L1MDa|LINE|L1 -101979 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 381 chr1 194983729 194984093 + 2 NA Intergenic L1ME4b|LINE|L1 1104804 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 226.25-28 chr5 24076744 24076951 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 125499 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 249-21 chr20 14758470 14758627 + 2 NA intron (NM_001351663, intron 5 of 17) L4_A_Mam|LINE|RTE-X 170970 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 333-13 chr7 12221191 12221502 + 2 NA intron (NM_001134232, intron 3 of 7) L1MC5a|LINE|L1 10052 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 241-35 chr9 28859599 28859820 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 3997 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 411.5-2 chr6 73949168 73949685 + 2 NA Intergenic Intergenic -120025 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 324.5-15 chr5 175788512 175788912 + 2 NA Intergenic Intergenic -7821 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 385.25-3 chr14 95606112 95606454 + 2 NA Intergenic Intergenic 32721 NR_146449 100506999 Hs.112858 NR_146449 ENSG00000258390 LINC02318 - long intergenic non-protein coding RNA 2318 ncRNA 275.75-9 chr17 31734245 31734415 + 2 NA Intergenic L1ME4a|LINE|L1 124632 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 184.25-20 chr2 43475575 43475769 + 2 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 120302 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 170-39 chr4 42080192 42080330 + 2 NA intron (NM_006345, intron 17 of 17) MER77B|LTR|ERVL 72394 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 267.5-30 chr6 151903940 151904178 + 2 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 94952 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 180-32 chr18 13686368 13686490 + 2 NA intron (NM_152352, intron 1 of 3) LTR56|LTR|ERV1 40129 NM_152352 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 271.75-5 chr2 203544177 203544342 + 2 NA Intergenic Intergenic -8958 NM_213589 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 232-9 chr16 35571981 35572112 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -64876 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 302.25-11 chr4 40032021 40032261 + 2 NA Intergenic (ACAA)n|Simple_repeat|Simple_repeat -24709 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 285-2 chr1 42052535 42052734 + 2 NA Intergenic Intergenic -16700 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 187-28 chr2 112132268 112132363 + 2 NA Intergenic L1MEf|LINE|L1 -6070 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 339.5 chr1 155197099 155197375 + 2 NA intron (NM_001252608, intron 18 of 20) intron (NM_001252608, intron 18 of 20) 2060 NR_030281 693235 NR_030281 ENSG00000284586 MIR92B MIRN92B|hsa-mir-92b|mir-92b microRNA 92b ncRNA 262.25-3 chr10 107200916 107201108 + 2 NA Intergenic Intergenic -36306 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 201.5-54 chr6 151764731 151764878 + 2 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -40869 NM_001122741 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 464.75 chr5 152903490 152903906 + 2 NA intron (NR_109877, intron 2 of 4) AluSx|SINE|Alu 68651 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 373.75-4 chr6 106108741 106109083 + 2 NA 3' UTR (NM_001198, exon 7 of 7) 3' UTR (NM_001198, exon 7 of 7) 9971 NM_182907 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 277.25-23 chr5 110031543 110031813 + 2 NA Intergenic Intergenic 148496 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 264-30 chr8 119114199 119114368 + 2 NA Intergenic Intergenic -45501 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 401 chr10 105087509 105087778 + 2 NA intron (NM_014978, intron 5 of 26) L2c|LINE|L2 -421427 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 237-18 chr2 79209075 79209235 + 2 NA Intergenic AluJo|SINE|Alu -49402 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 295.5-6 chr12 96306627 96306777 + 2 NA intron (NM_002595, intron 5 of 16) intron (NM_002595, intron 5 of 16) 51204 NM_001303511 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 349-6 chr3 156547583 156547930 + 2 NA intron (NM_007107, intron 3 of 4) L4_C_Mam|LINE|RTE-X 6369 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 217.5-30 chr3 173812990 173813156 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 107723 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 234-15 chr13 40019267 40019448 + 2 NA Intergenic Intergenic -162452 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 245.5-34 chr5 64119248 64119440 + 2 NA Intergenic Intergenic -46499 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 300-22 chr8 117422341 117422574 + 2 NA Intergenic L1PA10|LINE|L1 -98256 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 281.75-15 chr5 144812404 144812697 + 2 NA Intergenic LTR84a|LTR|ERVL 607159 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 319-12 chr9 24730203 24730440 + 2 NA Intergenic Intergenic -184424 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 364.25-6 chr6 144701135 144701444 + 2 NA intron (NM_007124, intron 52 of 73) intron (NM_007124, intron 52 of 73) 295634 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 282-14 chr16 66902595 66902743 + 2 NA Intergenic Intergenic 16216 NM_004062 1014 Hs.513660 NM_004062 ENSG00000166589 CDH16 - cadherin 16 protein-coding 193-28 chr17 59320809 59320920 + 2 NA Intergenic Intergenic -10791 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 329.75-4 chr14 63606834 63607134 + 2 NA intron (NM_080666, intron 2 of 2) intron (NM_080666, intron 2 of 2) 34887 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 235-8 chr12 127442142 127442293 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -102145 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 313-11 chr3 68670539 68670729 + 2 NA Intergenic Intergenic 169997 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 264.5-27 chr6 166501874 166502147 + 2 NA intron (NM_001006932, intron 7 of 21) L1MB3|LINE|L1 7423 NR_031734 100302141 NR_031734 ENSG00000222958 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 387-6 chr3 176420775 176421372 + 2 NA Intergenic Intergenic -94030 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 287.75-9 chr8 71525972 71526243 + 2 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 21597 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 287 chr1 61103529 61103778 + 2 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 21092 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 298-20 chr5 146174448 146174607 + 2 NA intron (NM_001317965, intron 1 of 30) (AT)n|Simple_repeat|Simple_repeat 8123 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 287-6 chr19 28087152 28087424 + 2 NA Intergenic Intergenic -293348 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 161.5-34 chr14 85087070 85087193 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -184801 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 223.5-14 chr10 100591040 100591291 + 2 NA Intergenic L1MD1|LINE|L1 55222 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 185-25 chr22 24841168 24841288 + 2 NA intron (NM_001098498, intron 2 of 23) L1MB2|LINE|L1 35007 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 260-23 chr3 94672270 94672477 + 2 NA Intergenic Intergenic -265890 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 315.5-4 chr2 18704111 18704382 + 2 NA Intergenic HAL1|LINE|L1 -114666 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 258.75-6 chr11 114237701 114237912 + 2 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -58007 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 340-6 chr4 63396298 63396612 + 2 NA Intergenic LTR27E|LTR|ERV1 1012995 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 285.75-24 chr8 122555327 122555512 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 13225 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 260-28 chr5 164331147 164331340 + 2 NA Intergenic Intergenic 136159 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 347-8 chr6 159154669 159154890 + 2 NA Intergenic L1MEd|LINE|L1 -14621 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 213.25-9 chr11 40449967 40450111 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -156909 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 384-5 chr6 152950896 152951145 + 2 NA Intergenic Intergenic 32021 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 322.5-26 chr8 118368796 118369005 + 2 NA intron (NM_001363274, intron 4 of 4) L2c|LINE|L2 -252101 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 287.5-22 chr4 56407611 56407838 + 2 NA intron (NR_156493, intron 1 of 10) intron (NR_156493, intron 1 of 10) -20216 NM_001286669 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 221-50 chr9 27137243 27137439 + 2 NA intron (NM_001290078, intron 1 of 20) L1MD|LINE|L1 28200 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 137.75-79 chr7 86557186 86557392 + 2 NA Intergenic L1ME1|LINE|L1 -86620 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 270.25-10 chr3 114815040 114815351 + 2 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -56088 NM_001164344 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 400.5-3 chr5 87464815 87465072 + 2 NA Intergenic L1MA4A|LINE|L1 -51910 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 354.75-5 chr22 26225420 26225766 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 56119 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 340.5-2 chr12 49278315 49278538 + 2 NA Intergenic Intergenic 13344 NM_032704 84790 Hs.652390 NM_032704 ENSG00000167553 TUBA1C TUBA6|bcm948 tubulin alpha 1c protein-coding 123.5-90 chr5 91377164 91377241 + 2 NA intron (NR_138072, intron 2 of 7) intron (NR_138072, intron 2 of 7) 2895 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 346.75-6 chr6 83347060 83347408 + 2 NA intron (NM_002395, intron 4 of 13) AluSg|SINE|Alu 83817 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 207.75-23 chr20 10995141 10995279 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -31334 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 302-16 chr8 119577340 119577616 + 2 NA intron (NM_001330600, intron 19 of 25) intron (NM_001330600, intron 19 of 25) 15530 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 419.5 chr16 59824176 59824491 + 2 NA Intergenic MIRb|SINE|MIR -31020 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 268-6 chr11 80810746 80810899 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron -48019 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 463.5-3 chr9 77915966 77916295 + 2 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 115681 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 274-23 chr4 48183763 48184066 + 2 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -49664 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 315-2 chr11 125752530 125752767 + 2 NA Intergenic MIR|SINE|MIR 6369 NM_138294 160065 Hs.148565 NM_138294 ENSG00000171053 PATE1 PATE prostate and testis expressed 1 protein-coding 362 chr11 34706160 34706396 + 2 NA Intergenic L1MA2|LINE|L1 73712 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 232-12 chr18 70997197 70997389 + 2 NA Intergenic Intergenic -346339 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 214-19 chr14 80723295 80723492 + 2 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 218345 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 132-47 chr3 28208776 28208852 + 2 NA Intergenic L1ME3G|LINE|L1 -32805 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 327-8 chr16 6037113 6037422 + 2 NA intron (NM_018723, intron 1 of 15) Charlie20a|DNA|hAT-Charlie 17564 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 307.5-9 chr4 95008701 95008902 + 2 NA intron (NM_001256792, intron 1 of 10) L1ME3D|LINE|L1 12569 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 316-14 chr3 147885512 147885818 + 2 NA Intergenic Intergenic -192494 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 377.25-2 chr12 34385378 34385689 + 2 NA Intergenic Intergenic 363037 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 143-75 chr8 84409734 84409835 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -5700 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 226.5-45 chr6 62779559 62779718 + 2 NA Intergenic MIRb|SINE|MIR -493411 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 269.25-13 chr2 139505707 139505874 + 2 NA Intergenic L1MC1|LINE|L1 608466 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 257.5-30 chr8 78961612 78961785 + 2 NA Intergenic L2c|LINE|L2 124169 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 302.5-7 chr20 50102264 50102517 + 2 NA intron (NM_001282579, intron 1 of 4) intron (NM_001282579, intron 1 of 4) 10760 NM_001282578 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 134.5-73 chr5 11920693 11920778 + 2 NA Intergenic L2a|LINE|L2 -16289 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 337.5-12 chr8 11205571 11205957 + 2 NA Intergenic L1ME4b|LINE|L1 -3931 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 162-53 chr6 136359388 136359618 + 2 NA intron (NM_001198611, intron 14 of 16) intron (NM_001198611, intron 14 of 16) -69652 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 263.5-16 chr2 171501453 171501627 + 2 NA Intergenic L1MD|LINE|L1 -20693 NM_001256909 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 264.75-21 chr6 143309881 143310148 + 2 NA intron (NM_016108, intron 4 of 5) L1MA3|LINE|L1 132663 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 310.75 chr1 87194453 87194808 + 2 NA Intergenic MER39|LTR|ERV1 -18039 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 387.25-6 chr2 76921309 76921622 + 2 NA intron (NR_146416, intron 1 of 1) L1MC3|LINE|L1 -64500 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 295.5 chr1 66637096 66637411 + 2 NA intron (NM_032291, intron 4 of 24) intron (NM_032291, intron 4 of 24) 8813 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 174-30 chr2 61260274 61260426 + 2 NA intron (NM_014709, intron 43 of 79) intron (NM_014709, intron 43 of 79) 82932 NR_152210 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 234-44 chr8 140861950 140862171 + 2 NA intron (NR_148037, intron 6 of 34) intron (NR_148037, intron 6 of 34) -129407 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 181-22 chr12 84521291 84521394 + 2 NA Intergenic L1MCb|LINE|L1 391457 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 349-14 chr9 17759471 17759667 + 2 NA intron (NM_003026, intron 2 of 8) MIR|SINE|MIR 180503 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 333.5-2 chr11 82711152 82711371 + 2 NA Intergenic Intergenic 22603 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 404.25 chr14 68636510 68636900 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -7918 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 374.75 chr18 4239490 4239784 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -24965 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 247.5-31 chr5 84787696 84787911 + 2 NA Intergenic Intergenic -402923 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 229.5-48 chr8 63736754 63736909 + 2 NA Intergenic Intergenic -32599 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 166.75-51 chr5 128528576 128528734 + 2 NA intron (NM_001999, intron 3 of 64) L2|LINE|L2 9590 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 436.25 chr2 53857807 53858125 + 2 NA intron (NM_006794, intron 1 of 1) MIR|SINE|MIR 2001 NM_006794 10936 Hs.40763 NM_006794 ENSG00000119737 GPR75 GPRchr2|WI31133 G protein-coupled receptor 75 protein-coding 328-3 chr17 42056268 42056434 + 2 NA Intergenic Intergenic -5750 NM_001358661 110806298 Hs.127116 NM_001358661 ENSG00000267221 C17orf113 - chromosome 17 open reading frame 113 protein-coding 311-4 chr10 120076190 120076520 + 2 NA Intergenic FLAM_A|SINE|Alu 117842 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 180 chr1 30987007 30987165 + 2 NA intron (NM_001020658, intron 7 of 21) intron (NM_001020658, intron 7 of 21) -18849 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 450.75-6 chr7 49702542 49703035 + 2 NA Intergenic Intergenic -70850 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 201-27 chr21 15831739 15831927 + 2 NA intron (NM_001283042, intron 16 of 24) intron (NM_001283042, intron 16 of 24) 101851 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 369.75-9 chr5 100275534 100275866 + 2 NA Intergenic Intergenic 112554 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 322.5-5 chr18 37882418 37882603 + 2 NA Intergenic Intergenic 225375 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 317.25-15 chr6 143408291 143408558 + 2 NA Intergenic L1MC4a|LINE|L1 34253 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 174-43 chr5 36838361 36838487 + 2 NA Intergenic Intergenic 38270 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 213.75-4 chr1 76870890 76871078 + 2 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 3504 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 209-21 chr4 45682907 45683150 + 2 NA Intergenic Intergenic 441026 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 417-2 chr13 26618171 26618443 + 2 NA intron (NM_006646, intron 2 of 9) intron (NM_006646, intron 2 of 9) 60604 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 367.5-2 chr10 61356502 61356730 + 2 NA Intergenic Intergenic -96023 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 208-38 chr6 4308110 4308452 + 2 NA Intergenic MER97c|DNA|hAT-Tip100 -118252 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 322.5-9 chr2 153620286 153620580 + 2 NA Intergenic L1MA1|LINE|L1 -141671 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 386-3 chr8 120542063 120542457 + 2 NA intron (NM_021021, intron 5 of 6) intron (NM_021021, intron 5 of 6) 96841 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 351 chr10 92072128 92072522 + 2 NA intron (NM_001178137, intron 9 of 9) intron (NM_001178137, intron 9 of 9) 148555 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 345-8 chr17 71829986 71830388 + 2 NA Intergenic Intergenic 195792 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 165-24 chr16 56008886 56009000 + 2 NA Intergenic Intergenic -52912 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 169.5-19 chr12 20599010 20599134 + 2 NA intron (NM_001244683, intron 1 of 14) intron (NM_001244683, intron 1 of 14) 27208 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 129-58 chr5 107185119 107185187 + 2 NA Intergenic Intergenic -174139 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 190.25-47 chr5 145660104 145660232 + 2 NA Intergenic MIRb|SINE|MIR 175174 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 401.25-6 chr3 193793041 193793364 + 2 NA Intergenic MIRb|SINE|MIR 50807 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 507.5 chr15 69491793 69492286 + 2 NA Intergenic L1ME3Cz|LINE|L1 39221 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 179.25-23 chr2 219163014 219163198 + 2 NA intron (NM_001144890, intron 10 of 11) intron (NM_001144890, intron 10 of 11) -2241 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 218.5-15 chr15 65885572 65885801 + 2 NA intron (NM_004663, intron 4 of 4) intron (NM_004663, intron 4 of 4) 16195 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 192.5-37 chr22 27033042 27033195 + 2 NA Intergenic Intergenic 27400 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 242-31 chr5 65471185 65471403 + 2 NA intron (NR_135689, intron 2 of 25) intron (NR_135689, intron 2 of 25) 10626 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 236-21 chr2 55268368 55268530 + 2 NA intron (NM_001321004, intron 1 of 14) intron (NM_001321004, intron 1 of 14) 730 NM_001005369 4528 Hs.149894 NM_002453 ENSG00000085760 MTIF2 - mitochondrial translational initiation factor 2 protein-coding 189-33 chr21 26472275 26472384 + 2 NA intron (NR_135472, intron 4 of 4) intron (NR_135472, intron 4 of 4) 66386 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 302.25-4 chr12 105166149 105166313 + 2 NA intron (NM_001293640, intron 32 of 32) intron (NM_001293640, intron 32 of 32) 58500 NM_001293640 23325 Hs.12144 NM_015275 ENSG00000136051 WASHC4 KIAA1033|MRT43|SWIP WASH complex subunit 4 protein-coding 208-33 chr5 65441457 65441651 + 2 NA intron (NR_135689, intron 7 of 25) L1MEc|LINE|L1 40366 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 249-32 chr4 87211060 87211284 + 2 NA intron (NM_001292006, intron 1 of 9) intron (NM_001292006, intron 1 of 9) 9096 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 221-33 chr4 139830031 139830225 + 2 NA intron (NM_018717, intron 2 of 4) L3|LINE|CR1 164309 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 428.5-5 chr3 149522351 149522742 + 2 NA intron (NM_001348362, intron 9 of 9) intron (NM_001348362, intron 9 of 9) 47849 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 338-7 chr21 44621552 44621797 + 2 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) -5419 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 231 chr1 37143175 37143515 + 2 NA Intergenic Intergenic -18218 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 354.25 chr1 242456096 242456304 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) -6718 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 239.5-10 chr16 62430201 62430577 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -393951 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 305.75-4 chr14 58853403 58853834 + 2 NA intron (NR_110547, intron 1 of 5) MLT1G1-int|LTR|ERVL-MaLR 25330 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 253.25-30 chr7 34795378 34795566 + 2 NA intron (NM_207172, intron 3 of 8) L1MC1|LINE|L1 -37200 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 365-5 chr3 105633846 105634206 + 2 NA Intergenic Intergenic 233565 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 288-16 chr5 3122809 3123092 + 2 NA Intergenic Intergenic -54885 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 352.5-2 chr11 104262435 104262700 + 2 NA Intergenic Intergenic -98420 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 282.75 chr1 168315180 168315571 + 2 NA TTS (NM_005149) TTS (NM_005149) 34498 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box transcription factor 19 protein-coding 374.25 chr1 168685190 168685578 + 2 NA Intergenic MIRb|SINE|MIR 43822 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 212-28 chr20 15031123 15031269 + 2 NA intron (NM_001351663, intron 5 of 17) MER52A|LTR|ERV1 -101678 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 238.5-33 chr6 85355814 85356030 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 34264 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 187-41 chr4 23768275 23768406 + 2 NA Intergenic Intergenic 112952 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 233-28 chr6 28397361 28397537 + 2 NA intron (NR_136512, intron 2 of 5) intron (NR_136512, intron 2 of 5) 1317 NM_001368124 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 329.5-4 chr14 81297644 81297934 + 2 NA intron (NM_001366850, intron 5 of 7) AluSp|SINE|Alu -76399 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 228-29 chr3 190350952 190351151 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -28605 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 245.5-39 chr9 92868205 92868403 + 2 NA intron (NM_001261460, intron 2 of 5) intron (NM_001261460, intron 2 of 5) 9664 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 145.25-51 chr3 42191298 42191394 + 2 NA intron (NM_001349247, intron 6 of 16) intron (NM_001349247, intron 6 of 16) 31153 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 252.75-31 chr6 167854363 167854564 + 2 NA intron (NM_001291964, intron 1 of 32) L1MD|LINE|L1 26828 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 198.5-52 chr7 40599132 40599400 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 380673 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 225-35 chr7 93046504 93046663 + 2 NA Intergenic Intergenic 71396 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 379-7 chr3 143217793 143218047 + 2 NA Intergenic Intergenic 98149 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 221-22 chr2 136023706 136023838 + 2 NA Intergenic Intergenic -38088 NM_001293312 1615 Hs.503787 NM_001349 ENSG00000115866 DARS HBSL|aspRS aspartyl-tRNA synthetase protein-coding 276.25-8 chr2 181081920 181082065 + 2 NA Intergenic Intergenic -41845 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 229.5-23 chr16 73462066 73462323 + 2 NA Intergenic L1MD1|LINE|L1 75389 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 230.5-41 chr5 72650033 72650164 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 10571 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 302.25 chr10 48209651 48209907 + 2 NA intron (NM_001018071, intron 13 of 28) L1ME4a|LINE|L1 -34636 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 319.5-6 chr2 17373075 17373284 + 2 NA Intergenic Intergenic 145261 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 216.5-28 chr4 124835950 124836250 + 2 NA Intergenic L1MCc|LINE|L1 -123368 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 330.25-4 chr19 7521264 7521463 + 2 NA TTS (NM_018083) TTS (NM_018083) -1261 NM_020533 57192 Hs.631858 NM_020533 ENSG00000090674 MCOLN1 MG-2|ML1|ML4|MLIV|MST080|MSTP080|TRP-ML1|TRPM-L1|TRPML1 mucolipin 1 protein-coding 363.5-8 chr8 28732490 28732801 + 2 NA intron (NM_001440, intron 4 of 6) L1MB7|LINE|L1 31144 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 404.5-2 chr21 29117572 29117896 + 2 NA intron (NM_001286622, intron 6 of 8) intron (NM_001286622, intron 6 of 8) -4256 NM_001371370 249-29 chr3 94219721 94219918 + 2 NA Intergenic Intergenic 156758 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 273-9 chr14 80240902 80241057 + 2 NA intron (NR_038355, intron 2 of 8) L1ME3|LINE|L1 -9922 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 392.5-4 chr17 32792903 32793180 + 2 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 84083 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 190-38 chr5 36094709 36094818 + 2 NA Intergenic Intergenic -27881 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 233.75-7 chr12 24585649 24585874 + 2 NA Intergenic L1MCb|LINE|L1 -1593 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 129.75-48 chr20 54478288 54478396 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 2749 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 277-10 chr15 91599943 91600164 + 2 NA Intergenic Intergenic 136714 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 233.75-28 chr6 122343777 122343966 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -55680 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 301-10 chr14 61507454 61507739 + 2 NA intron (NM_006255, intron 10 of 13) L1MA10|LINE|L1 62598 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 395 chr1 168010174 168010401 + 2 NA intron (NR_146230, intron 10 of 17) intron (NR_146230, intron 10 of 17) 11627 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 383-5 chr21 27743644 27743861 + 2 NA intron (NR_024357, intron 2 of 3) intron (NR_024357, intron 2 of 3) 21373 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 162.25-31 chr4 72488325 72488410 + 2 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 80854 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 301-9 chr14 59208474 59208841 + 2 NA intron (NM_001270520, intron 1 of 24) MER72B|LTR|ERV1 19990 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 217-34 chr9 22711883 22712047 + 2 NA intron (NR_038977, intron 3 of 5) L1MB5|LINE|L1 65765 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 334-5 chr3 101056100 101056305 + 2 NA Intergenic L1PBa|LINE|L1 -62712 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 422.25-2 chr11 38581625 38581918 + 2 NA Intergenic Intergenic 64585 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 342.25-9 chr8 80228468 80228799 + 2 NA Intergenic L2a|LINE|L2 -12756 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 225-39 chr8 31936945 31937410 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -88559 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 362.25-9 chr8 135573226 135573426 + 2 NA intron (NM_006558, intron 5 of 8) intron (NM_006558, intron 5 of 8) 115870 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 323-13 chr3 153094833 153095069 + 2 NA Intergenic Intergenic -67275 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 264.5-20 chr3 11330886 11331089 + 2 NA intron (NM_001136031, intron 7 of 17) intron (NM_001136031, intron 7 of 17) 58590 NM_001349236 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 305-11 chr15 87182232 87182406 + 2 NA Intergenic L1ME1|LINE|L1 -193893 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 221-43 chr6 165832743 165832955 + 2 NA Intergenic Intergenic -154702 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 239.75-26 chr5 115578714 115578882 + 2 NA 3' UTR (NM_001164468, exon 4 of 4) 3' UTR (NM_001164468, exon 4 of 4) -23357 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 400.75 chr2 14432521 14432765 + 2 NA Intergenic L1MC4|LINE|L1 -31685 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 219.5-20 chr17 27402729 27402872 + 2 NA Intergenic Intergenic -15205 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 280-8 chr14 50565849 50566056 + 2 NA intron (NM_015915, intron 1 of 13) L1ME3E|LINE|L1 5927 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 379.5-7 chr2 189524020 189524391 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 56606 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 379-11 chr9 71827403 71827766 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -59071 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 200.5-67 chr8 126089773 126089947 + 2 NA Intergenic Intergenic -138663 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 191.5-16 chr12 592901 593014 + 2 NA intron (NM_016533, intron 1 of 3) L1M5|LINE|L1 -6471 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 208-4 chr1 177035114 177035259 + 2 NA intron (NM_207108, intron 2 of 21) MIR|SINE|MIR -5741 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 349-9 chr5 43709858 43710154 + 2 NA Intergenic Intergenic -106776 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 232.5-56 chrX 6833544 6833700 + 2 NA Intergenic (TGGA)n|Simple_repeat|Simple_repeat -298504 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 208-22 chr20 46850998 46851154 + 2 NA Intergenic MIR|SINE|MIR -43548 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 495.75 chr7 84615003 84615364 + 2 NA Intergenic Intergenic 82707 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 217-13 chr2 196564008 196564129 + 2 NA intron (NM_001348768, intron 1 of 28) L1MC4|LINE|L1 28915 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 186-4 chr1 100178520 100178696 + 2 NA promoter-TSS (NM_001256385) promoter-TSS (NM_001256385) -335 NM_144620 127495 Hs.44277 NM_144620 ENSG00000122477 LRRC39 - leucine rich repeat containing 39 protein-coding 212.25-28 chr22 35000953 35001194 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -3157 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 338-9 chr5 61516958 61517307 + 2 NA intron (NM_020928, intron 4 of 13) L1MEf|LINE|L1 -120628 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 126.5-74 chr3 148951423 148951509 + 2 NA Intergenic MER90a|LTR|ERV1 -39942 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 314-16 chr7 8050127 8050412 + 2 NA intron (NM_138426, intron 3 of 7) intron (NM_138426, intron 3 of 7) 81473 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 285.25-8 chr2 23745654 23745886 + 2 NA Intergenic L2a|LINE|L2 181353 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 234-20 chr16 7963282 7963444 + 2 NA Intergenic Intergenic 626475 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 341-5 chr21 31576965 31577195 + 2 NA Intergenic Intergenic 17847 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 383.5-11 chr9 77381270 77381484 + 2 NA intron (NM_001018038, intron 67 of 68) intron (NM_001018038, intron 67 of 68) -66272 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 316.25-5 chr6 37334486 37334790 + 2 NA Intergenic Intergenic -19345 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 151.5-81 chr8 24504809 24504897 + 2 NA intron (NM_003817, intron 20 of 21) intron (NM_003817, intron 20 of 21) 10015 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 391 chr11 54851213 54851572 + 2 NA Intergenic ALR/Alpha|Satellite|centr 144560 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 296.5-15 chr2 103130872 103131100 + 2 NA Intergenic Intergenic -146557 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 280.5-9 chr14 61404934 61405122 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 83585 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 197-23 chr2 29882130 29882253 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 39395 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 330.25-2 chr14 55898631 55898994 + 2 NA Intergenic Intergenic -102138 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 217-30 chr8 83055180 83055346 + 2 NA Intergenic Intergenic 143159 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 261.5 chr1 37925247 37925553 + 2 NA intron (NR_158630, intron 7 of 24) intron (NR_158630, intron 7 of 24) 6339 NM_001297434 3633 Hs.449942 NM_005540 ENSG00000204084 INPP5B 5PTase inositol polyphosphate-5-phosphatase B protein-coding 402.25 chr1 147871622 147872017 + 2 NA Intergenic L1MCa|LINE|L1 -30976 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 273.75-5 chr11 55079106 55079299 + 2 NA Intergenic L1PA4|LINE|L1 -182953 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1657.5 chr17_KI270729v1_random 27682 27895 + 14 NA NA (GAATG)n|Satellite|Satellite NA NA 297.25-6 chr10 100137545 100137860 + 1.75 NA Intergenic L1MC1|LINE|L1 48327 NR_144755 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 271.75-10 chr4 88195442 88195777 + 1.75 NA intron (NM_001257386, intron 1 of 15) MER50|LTR|ERV1 36017 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 150-37 chr2 71091422 71091536 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22831 NM_001365466 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 321.75-9 chr21 16039613 16039883 + 1.75 NA Intergenic Intergenic -30740 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 199-26 chr20 59528614 59528808 + 1.75 NA Intergenic L1MC|LINE|L1 -48798 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 161.75-34 chr3 119891577 119891727 + 1.75 NA intron (NM_002093, intron 7 of 11) intron (NM_002093, intron 7 of 11) 108942 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 128.5-60 chr3 86363019 86363129 + 1.75 NA Intergenic Intergenic -118869 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 158.5-57 chr2 64233742 64233859 + 1.75 NA intron (NR_120420, intron 2 of 4) MIRb|SINE|MIR 5399 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 188-10 chr13 32901750 32901920 + 1.75 NA intron (NR_047020, intron 3 of 4) L2a|LINE|L2 9817 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 195.5-2 chr1 59442398 59442537 + 1.75 NA intron (NM_001350794, intron 5 of 14) (TTTCC)n|Simple_repeat|Simple_repeat -73163 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 236-3 chr10 61164826 61165077 + 1.75 NA Intergenic Intergenic 148676 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 218.5-32 chr22 49178459 49178684 + 1.75 NA Intergenic Intergenic 311801 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 286.25-5 chr15 27478619 27478839 + 1.75 NA intron (NM_001270873, intron 5 of 5) L1MB7|LINE|L1 -317410 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 325.75-3 chr16 13952058 13952360 + 1.75 NA 3' UTR (NM_005236, exon 11 of 11) 3' UTR (NM_005236, exon 11 of 11) 32052 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 261.75-19 chr22 26587581 26587858 + 1.75 NA intron (NM_001362923, intron 1 of 7) MER113A|DNA|hAT-Charlie 2413 NM_001362922 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 169.75-54 chr5 130650613 130650720 + 1.75 NA Intergenic MIR|SINE|MIR 514590 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 367.25-8 chr7 142023792 142024066 + 1.75 NA intron (NM_004668, intron 7 of 47) intron (NM_004668, intron 7 of 47) 28050 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 235.5-56 chr8 87827584 87827793 + 1.75 NA Intergenic LTR37A|LTR|ERV1 46327 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 207.25-23 chr5 22993631 22993848 + 1.75 NA Intergenic L1M1|LINE|L1 -140395 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 326.25-5 chr16 74059051 74059448 + 1.75 NA Intergenic Intergenic 156272 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 186.25-27 chr2 84774612 84774799 + 1.75 NA intron (NM_001370, intron 64 of 76) L1PA16|LINE|L1 106379 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 127.25-81 chr6 12193235 12193385 + 1.75 NA Intergenic L1ME4c|LINE|L1 -97051 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 196.25-10 chr11 84821401 84821516 + 1.75 NA intron (NM_001351274, intron 5 of 26) MER58B|DNA|hAT-Charlie -100516 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 274.75 chr1 38304823 38305032 + 1.75 NA Intergenic L1MA7|LINE|L1 -90160 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 302.5-16 chr6 134711606 134711933 + 1.75 NA Intergenic Intergenic -171764 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 376.75-4 chr7 6320235 6320641 + 1.75 NA Intergenic AluSc|SINE|Alu 28529 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 200-28 chr21 29245829 29246018 + 1.75 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 52429 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 179.75-57 chr8 82051585 82051723 + 1.75 NA Intergenic Intergenic -209368 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 237.75-28 chr2 205395034 205395391 + 1.75 NA intron (NM_205863, intron 18 of 21) L2a|LINE|L2 -287288 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 246.75-9 chr16 54090222 54090656 + 1.75 NA intron (NM_001363988, intron 9 of 9) L1MB4|LINE|L1 51046 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 230.75-2 chr10 56253968 56254176 + 1.75 NA Intergenic L1PA10|LINE|L1 107187 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 166-27 chr16 74504783 74504916 + 1.75 NA intron (NR_027264, intron 3 of 26) intron (NR_027264, intron 3 of 26) -83379 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 312.5-3 chr11 20332839 20333118 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -30707 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 169.75-37 chr2 210814338 210814499 + 1.75 NA Intergenic Intergenic 196847 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 268.75-2 chr1 102003943 102004385 + 1.75 NA Intergenic Intergenic -6930 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 191.5-58 chr5 159869537 159869702 + 1.75 NA non-coding (NR_109891, exon 1 of 3) non-coding (NR_109891, exon 1 of 3) 1765 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 336-7 chr2 185634139 185634461 + 1.75 NA Intergenic Intergenic 104419 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 366.5-6 chr22 27465972 27466205 + 1.75 NA Intergenic Intergenic 155437 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 209.25-31 chr4 132704564 132704744 + 1.75 NA Intergenic Charlie6|DNA|hAT-Charlie 113565 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 299.5-16 chr8 137238537 137238872 + 1.75 NA Intergenic Intergenic 174884 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 206.75-19 chr20 31067333 31067580 + 1.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -190208 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 249.5-15 chr20 39140883 39141105 + 1.75 NA Intergenic AluSx|SINE|Alu 83754 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 196.5-71 chr7 133311465 133311712 + 1.75 NA intron (NM_021807, intron 4 of 17) intron (NM_021807, intron 4 of 17) 20707 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 412.5-4 chr4 63585526 63585953 + 1.75 NA Intergenic Intergenic 823711 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 275.25-21 chr8 94885494 94885724 + 1.75 NA intron (NM_057749, intron 7 of 11) Tigger5b|DNA|TcMar-Tigger 9645 NM_057749 9134 Hs.521693 NM_004702 ENSG00000175305 CCNE2 CYCE2 cyclin E2 protein-coding 208 chr1 76893991 76894186 + 1.75 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 26608 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 241.75-27 chr7 29859115 29859371 + 1.75 NA intron (NM_001080529, intron 2 of 8) intron (NM_001080529, intron 2 of 8) 52689 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 246.75-28 chr6 136561579 136561851 + 1.75 NA intron (NM_005923, intron 27 of 29) intron (NM_005923, intron 27 of 29) -10896 NM_003980 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 276.75 chr1 197782390 197782608 + 1.75 NA Intergenic Intergenic -7019 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 226.25-14 chr19 37928598 37928765 + 1.75 NA intron (NM_015073, intron 1 of 21) MER5A|DNA|hAT-Charlie 21473 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 242.5-17 chr2 177334678 177334912 + 1.75 NA intron (NR_026966, intron 2 of 8) intron (NR_026966, intron 2 of 8) -20913 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 151-59 chr6 91425363 91425496 + 1.75 NA Intergenic L1MD|LINE|L1 -96231 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 274.25-3 chr14 70103428 70103662 + 1.75 NA intron (NM_033262, intron 2 of 7) L1MEf|LINE|L1 -23328 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 197.25 chr1 55914466 55914629 + 1.75 NA Intergenic Intergenic 30416 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 170.75-47 chr3 25778407 25778630 + 1.75 NA intron (NM_018297, intron 2 of 11) intron (NM_018297, intron 2 of 11) 4925 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 234.75-30 chr3 74303047 74303439 + 1.75 NA intron (NM_020872, intron 12 of 21) intron (NM_020872, intron 12 of 21) 217897 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 214-39 chr6 131877034 131877252 + 1.75 NA exon (NM_006208, exon 18 of 25) exon (NM_006208, exon 18 of 25) 69123 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 170.75-5 chr1 52129599 52129721 + 1.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -12429 NM_007324 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 242-18 chr15 89993971 89994125 + 1.75 NA Intergenic Intergenic -7276 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 113.75-115 chr9 37435336 37435419 + 1.75 NA intron (NM_012203, intron 8 of 8) intron (NM_012203, intron 8 of 8) 12681 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 250-19 chr3 36412612 36412847 + 1.75 NA intron (NM_001292049, intron 1 of 8) L1M3|LINE|L1 32242 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 278.5-9 chr14 63670664 63670883 + 1.75 NA Intergenic Intergenic -28902 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 248.25-24 chr3 133671863 133672074 + 1.75 NA intron (NM_001354703, intron 1 of 22) L1ME3A|LINE|L1 9970 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 290-17 chr7 83803738 83804021 + 1.75 NA Intergenic Intergenic -154740 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 304-7 chr6 153279722 153279923 + 1.75 NA Intergenic AluSz|SINE|Alu -148540 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 365.25-2 chr14 87282955 87283262 + 1.75 NA Intergenic MIR|SINE|MIR 372186 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 273.75-7 chr13 106201343 106201632 + 1.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -175077 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 219.5-28 chr2 125307539 125307709 + 1.75 NA Intergenic Intergenic 810361 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 168-7 chr1 159370546 159370645 + 1.75 NA Intergenic Intergenic -26870 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 215-4 chr1 247686311 247686494 + 1.75 NA Intergenic L1M2|LINE|L1 -13361 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 234.25-22 chr3 81173847 81174003 + 1.75 NA Intergenic Intergenic 180057 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 281.5-19 chr7 134689191 134689416 + 1.75 NA Intergenic Intergenic 42450 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 180-74 chr9 91102243 91102390 + 1.75 NA Intergenic LTR16C|LTR|ERVL -16746 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 356.75-3 chr2 51575943 51576252 + 1.75 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 543496 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 218.5-21 chr2 33667172 33667428 + 1.75 NA Intergenic Tigger10|DNA|TcMar-Tigger -39586 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 268.75-27 chr5 154724328 154724521 + 1.75 NA intron (NM_001367717, intron 1 of 18) intron (NM_001367717, intron 1 of 18) 11581 NM_015315 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 255.25-10 chr15 100337765 100338061 + 1.75 NA intron (NM_139057, intron 2 of 21) intron (NM_139057, intron 2 of 21) 4062 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 160.75-52 chr5 145024198 145024314 + 1.75 NA Intergenic Intergenic 811086 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 152.5-37 chr15 66525603 66525722 + 1.75 NA intron (NM_001287823, intron 7 of 17) MER20|DNA|hAT-Charlie 20336 NM_017975 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 281.25-17 chr8 129740795 129741033 + 1.75 NA Intergenic L1M3|LINE|L1 45710 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 304.75-10 chr5 154861237 154861519 + 1.75 NA intron (NM_004779, intron 1 of 6) intron (NM_004779, intron 1 of 6) 2751 NM_001301086 9337 Hs.26703 NM_004779 ENSG00000155508 CNOT8 CAF1|CALIF|Caf1b|POP2|hCAF1 CCR4-NOT transcription complex subunit 8 protein-coding 266.5-25 chr8 142185088 142185369 + 1.75 NA Intergenic Intergenic 8889 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 423.5-2 chr2 8231584 8232036 + 1.75 NA intron (NR_152741, intron 9 of 9) L1MEf|LINE|L1 96609 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 284.5-8 chr11 102853287 102853492 + 1.75 NA Intergenic Intergenic -9780 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 162-43 chr4 183133810 183133931 + 1.75 NA intron (NM_024949, intron 1 of 22) L1MEd|LINE|L1 34613 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 256.5-38 chr7 62704147 62704305 + 1.75 NA Intergenic ALR/Alpha|Satellite|centr 599830 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 191-32 chr3 56930640 56930757 + 1.75 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -9342 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 239.75-18 chr2 144231011 144231177 + 1.75 NA intron (NM_001354351, intron 4 of 15) intron (NM_001354351, intron 4 of 15) 6245 NM_024659 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 197-26 chr2 81372529 81372672 + 1.75 NA Intergenic Intergenic 94346 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 370-2 chr1 173556009 173556398 + 1.75 NA intron (NM_178527, intron 10 of 27) intron (NM_178527, intron 10 of 27) 46869 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 187.75-49 chr7 87172939 87173295 + 1.75 NA intron (NR_024550, intron 5 of 17) intron (NR_024550, intron 5 of 17) 20563 NM_021145 9988 Hs.196129 NM_021145 ENSG00000135164 DMTF1 DMP1|DMTF|MRUL|hDMP1 cyclin D binding myb like transcription factor 1 protein-coding 323-16 chr6 68159655 68160004 + 1.75 NA Intergenic Intergenic 104478 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 380-4 chr3 12008421 12008803 + 1.75 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 4221 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 232.25-25 chr6 3459570 3459832 + 1.75 NA intron (NR_147844, intron 1 of 1) L2a|LINE|L2 -3142 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 154.75-44 chr3 63999245 63999369 + 1.75 NA intron (NM_001177387, intron 12 of 12) intron (NM_001177387, intron 12 of 12) -4715 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 146-41 chr4 94729939 94730054 + 1.75 NA Intergenic L2|LINE|L2 27537 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 256-21 chr4 30836407 30836595 + 1.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 116132 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 372.75 chr1 35907602 35907843 + 1.75 NA intron (NM_001317122, intron 12 of 18) intron (NM_001317122, intron 12 of 18) -23383 NM_177422 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 318-20 chr6 81041384 81041633 + 1.75 NA Intergenic L1M1|LINE|L1 711173 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 400.5-8 chrX 142858274 142858619 + 1.75 NA Intergenic Intergenic -167482 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 280.75-5 chr2 123350198 123350411 + 1.75 NA Intergenic HAL1ME|LINE|L1 -276823 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 137.75-90 chr8 131015553 131015676 + 1.75 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 25295 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 234.25-4 chr10 68313089 68313426 + 1.75 NA intron (NM_001033083, intron 1 of 8) L1MA8|LINE|L1 -18436 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 214.75-3 chr10 14848390 14848760 + 1.75 NA intron (NM_016299, intron 3 of 13) intron (NM_016299, intron 3 of 13) 10269 NR_103464 51182 Hs.534169 NM_016299 ENSG00000187522 HSPA14 HSP70-4|HSP70L1 heat shock protein family A (Hsp70) member 14 protein-coding 461 chr10 67063524 67063972 + 1.75 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 51482 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 298-17 chr3 111610121 111610292 + 1.75 NA intron (NR_134917, intron 8 of 14) intron (NR_134917, intron 8 of 14) -14860 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 303.75-5 chr22 50078336 50078669 + 1.75 NA intron (NM_015166, intron 5 of 11) AluSx|SINE|Alu 6850 NM_139202 23209 Hs.517729 NM_015166 ENSG00000100427 MLC1 LVM|MLC|VL modulator of VRAC current 1 protein-coding 299-13 chr3 97364942 97365287 + 1.75 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -74493 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 187-16 chr18 4712276 4712412 + 1.75 NA Intergenic Intergenic -257037 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 214.5-31 chr21 45312722 45312939 + 1.75 NA Intergenic L1MC1|LINE|L1 24778 NR_026943 642852 Hs.11637 NR_026943 ENSG00000223768 LINC00205 NCRNA00205 long intergenic non-protein coding RNA 205 ncRNA 175-41 chr3 162061263 162061454 + 1.75 NA Intergenic Intergenic 564550 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 156.5-26 chr16 86622376 86622507 + 1.75 NA Intergenic Intergenic 43932 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 197.5-57 chr8 24972096 24972213 + 1.75 NA Intergenic Intergenic -15285 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 135.25-85 chr6 72452762 72452894 + 1.75 NA Intergenic Intergenic 86082 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 230-11 chr2 22102874 22103130 + 1.75 NA Intergenic L1MEc|LINE|L1 -392350 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 210.5-42 chr3 117957974 117958135 + 1.75 NA Intergenic CR1_Mam|LINE|CR1 -267129 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 307 chr1 154598226 154598519 + 1.75 NA intron (NM_001111, intron 3 of 14) intron (NM_001111, intron 3 of 14) 7881 NM_001193495 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 180.25-63 chr7 145129275 145129402 + 1.75 NA Intergenic Intergenic -293285 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 156.5-44 chr21 16262223 16262368 + 1.75 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 22473 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 241-19 chr2 162512539 162512788 + 1.75 NA exon (NM_033272, exon 5 of 16) exon (NM_033272, exon 5 of 16) 168295 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 185-3 chr10 41875368 41875525 + 1.75 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 492599 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 282.75-10 chr21 14793625 14793878 + 1.75 NA Intergenic Intergenic 124917 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 204.75-47 chr8 81798923 81799074 + 1.75 NA TTS (NM_022133) TTS (NM_022133) 43187 NM_152837 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 224-19 chr22 34884826 34885115 + 1.75 NA intron (NR_138042, intron 3 of 4) Charlie24|DNA|hAT-Charlie 112946 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 246.25-28 chr7 8107616 8107841 + 1.75 NA Intergenic L1MD3|LINE|L1 138932 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 278.5-8 chr14 49085013 49085294 + 1.75 NA Intergenic L1ME3C|LINE|L1 501227 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 194.5-19 chr12 129673613 129673862 + 1.75 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 230288 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 243-15 chr3 68633626 68633821 + 1.75 NA Intergenic Intergenic 133086 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 203.75-9 chr14 53693772 53694078 + 1.75 NA Intergenic Intergenic 254559 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 235.5-49 chr5 140980580 140980914 + 1.75 NA intron (NM_018911, intron 2 of 3) intron (NM_018911, intron 2 of 3) 13980 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 269.5-17 chr2 225003468 225003678 + 1.75 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 6967 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 244.5-7 chr11 132544067 132544318 + 1.75 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 259890 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 317-8 chr5 34804750 34805037 + 1.75 NA intron (NM_015577, intron 5 of 17) intron (NM_015577, intron 5 of 17) -34271 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 273.5-19 chr6 56039511 56039877 + 1.75 NA Intergenic Intergenic 51968 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 317.25-13 chr3 193232717 193233011 + 1.75 NA Intergenic Intergenic -8358 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 352.75 chr10 32130930 32131265 + 1.75 NA Intergenic Intergenic -74672 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 341-8 chr7 106264114 106264440 + 1.75 NA intron (NM_005746, intron 6 of 10) Tigger19a|DNA|TcMar-Tigger 20706 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 415.75-3 chr2 106830353 106830913 + 1.75 NA intron (NM_001322362, intron 4 of 5) MER58A|DNA|hAT-Charlie 55395 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 200.5-35 chr2 133638054 133638285 + 1.75 NA Intergenic L1MEd|LINE|L1 -69706 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 167.5-81 chr7 82560001 82560116 + 1.75 NA Intergenic Intergenic -116102 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 237.25-26 chr5 176497984 176498250 + 1.75 NA intron (NM_014613, intron 8 of 10) AluJb|SINE|Alu 39285 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 231-36 chr7 36442301 36442544 + 1.75 NA intron (NM_001284302, intron 20 of 22) MER58A|DNA|hAT-Charlie -52065 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 296-5 chr12 32439184 32439613 + 1.75 NA intron (NM_001370298, intron 1 of 16) L1MA8|LINE|L1 39840 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 379.25-4 chr5 7111380 7111712 + 1.75 NA Intergenic Intergenic 157808 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 182.25-48 chr6 35279890 35280063 + 1.75 NA intron (NM_001292032, intron 1 of 12) AluJr|SINE|Alu -17842 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 317-5 chr18 60098202 60098437 + 1.75 NA Intergenic Intergenic 198323 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 269.5-32 chr8 134238821 134239100 + 1.75 NA Intergenic L1MD2|LINE|L1 352464 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 190.5-65 chr6 51306262 51306416 + 1.75 NA Intergenic Intergenic -315531 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 216.75-29 chr3 94598334 94598494 + 1.75 NA Intergenic Intergenic -339849 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 194.25-44 chr6 150970870 150971020 + 1.75 NA intron (NM_001350486, intron 19 of 27) MIR3|SINE|MIR -36063 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 341.25-5 chr12 61026792 61027229 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 1165829 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 144.75-44 chr2 118485673 118485784 + 1.75 NA Intergenic Intergenic 117238 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 123-57 chr6 137257814 137257938 + 1.75 NA Intergenic Intergenic -38446 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 338.25-6 chr3 190954932 190955207 + 1.75 NA Intergenic L1PA4|LINE|L1 77139 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 170.5-26 chr13 113100490 113100627 + 1.75 NA TTS (NM_001112732) TTS (NM_001112732) -5230 NM_001267554 2155 Hs.36989 NM_000131 ENSG00000057593 F7 SPCA coagulation factor VII protein-coding 200.75-46 chr8 136229541 136229855 + 1.75 NA Intergenic Intergenic -301100 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 233.5-48 chr7 24733649 24734090 + 1.75 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 23595 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 220.5-2 chr1 43673317 43673515 + 1.75 NA intron (NM_014663, intron 11 of 21) intron (NM_014663, intron 11 of 21) 23267 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 177.75-21 chr2 21677411 21677561 + 1.75 NA Intergenic L1MB3|LINE|L1 33166 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 390.75 chr1 85203276 85203528 + 1.75 NA Intergenic AluJb|SINE|Alu -2386 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 297.25-14 chr4 102454838 102455116 + 1.75 NA intron (NR_136202, intron 1 of 4) MSTC-int|LTR|ERVL-MaLR -46382 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 212.25-27 chr22 31086831 31087101 + 1.75 NA intron (NM_001207018, intron 1 of 19) intron (NM_001207018, intron 1 of 19) 1970 NM_001207018 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 411.75-6 chr3 68434587 68434942 + 1.75 NA intron (NM_001252216, intron 3 of 4) MamGypsy2-I|LTR|Gypsy -65873 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 381-3 chr2 68191433 68191785 + 1.75 NA intron (NM_000945, intron 2 of 5) Tigger3c|DNA|TcMar-Tigger 33721 NM_020143 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 213.25-5 chr10 64969282 64969445 + 1.75 NA Intergenic Intergenic -44845 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 219.25-29 chr5 162703387 162703535 + 1.75 NA Intergenic Intergenic 635819 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 256.25-12 chr3 189720911 189721151 + 1.75 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -68628 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 180.25 chr1 34969487 34969624 + 1.75 NA Intergenic L1MEg2|LINE|L1 9151 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 352.5-5 chr15 100967175 100967471 + 1.75 NA intron (NM_024652, intron 2 of 33) intron (NM_024652, intron 2 of 33) 47966 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 223.75-7 chr14 31186146 31186330 + 1.75 NA intron (NM_015382, intron 2 of 42) L2b|LINE|L2 21555 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 311.75-4 chr13 71089267 71089477 + 1.75 NA intron (NR_047699, intron 1 of 3) L2a|LINE|L2 74231 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 274-19 chr20 25408787 25409007 + 1.75 NA intron (NM_021067, intron 1 of 6) intron (NM_021067, intron 1 of 6) 1214 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 304.5-2 chr14 44188575 44188825 + 1.75 NA Intergenic Intergenic 318583 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 373-2 chr16 25437289 25437771 + 1.75 NA Intergenic L1PB|LINE|L1 -179685 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 278.25-6 chr10 31986283 31986558 + 1.75 NA Intergenic MIR|SINE|MIR -57544 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 238.25-10 chr18 73053706 73053883 + 1.75 NA Intergenic Intergenic 184754 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 389.25-2 chr18 54320155 54320562 + 1.75 NA exon (NM_001351621, exon 9 of 9) exon (NM_001351621, exon 9 of 9) 34215 NR_138549 147323 Hs.438779 NM_139171 ENSG00000174448 STARD6 - StAR related lipid transfer domain containing 6 protein-coding 196.25-58 chr6 155967676 155967819 + 1.75 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 20950 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 131.75-6 chr1 158159874 158159984 + 1.75 NA Intergenic Intergenic -19289 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 384.5 chr20 15957040 15957464 + 1.75 NA intron (NM_001351663, intron 12 of 17) L1ME3A|LINE|L1 28630 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 224.5-37 chr7 49921026 49921362 + 1.75 NA non-coding (NR_136188, exon 4 of 4) non-coding (NR_136188, exon 4 of 4) 145861 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 361.75-4 chr21 14714130 14714663 + 1.75 NA Intergenic L1ME3A|LINE|L1 -71289 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 247.75 chr11 57155168 57155449 + 1.75 NA Intergenic Intergenic -26645 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 290.5-15 chr16 75025820 75026087 + 1.75 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 26929 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 251-7 chr11 37331645 37331853 + 1.75 NA Intergenic Intergenic -606852 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 232.75-24 chr7 33883846 33884031 + 1.75 NA Intergenic Intergenic -20977 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 293-7 chr14 51951542 51951763 + 1.75 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -33081 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 204.5-41 chr3 46566455 46566650 + 1.75 NA promoter-TSS (NM_024512) promoter-TSS (NM_024512) -250 NM_024512 79442 Hs.657345 NM_024512 ENSG00000163827 LRRC2 - leucine rich repeat containing 2 protein-coding 219.5-19 chr16 52048192 52048427 + 1.75 NA intron (NM_001242473, intron 2 of 5) intron (NM_001242473, intron 2 of 5) 25626 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 308-11 chr6 44838357 44838613 + 1.75 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -286604 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 289.75-16 chr4 34477519 34477966 + 1.75 NA Intergenic Intergenic -207995 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 153.25-26 chr2 49727955 49728099 + 1.75 NA Intergenic Intergenic 246176 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 314.25-13 chr9 105299935 105300141 + 1.75 NA intron (NM_001330731, intron 2 of 15) intron (NM_001330731, intron 2 of 15) 55387 NM_080546 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 227.25-26 chr3 185819083 185819285 + 1.75 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 1947 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 223-13 chr13 39019828 39020060 + 1.75 NA intron (NM_170719, intron 8 of 11) intron (NM_170719, intron 8 of 11) 18132 NM_170719 80209 Hs.318526 NM_025138 ENSG00000120685 PROSER1 C13orf23 proline and serine rich 1 protein-coding 236.5-26 chr20 39954502 39954713 + 1.75 NA Intergenic Intergenic -49854 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 266.75-12 chr9 36911299 36911645 + 1.75 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -17941 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 217.25-23 chr3 135891192 135891410 + 1.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -74427 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 241.75-5 chr10 71979959 71980114 + 1.75 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 15641 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 115.5-90 chr7 66282809 66282899 + 1.75 NA intron (NM_003596, intron 2 of 5) intron (NM_003596, intron 2 of 5) 77520 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 281-10 chr2 48843086 48843297 + 1.75 NA Intergenic Intergenic -87467 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 156.25-55 chr4 48554970 48555079 + 1.75 NA intron (NM_015030, intron 35 of 63) MIRb|SINE|MIR 64772 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 230.75-27 chr8 103789435 103789627 + 1.75 NA intron (NM_001348497, intron 3 of 22) MLT1E|LTR|ERVL-MaLR -29689 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 436.5-4 chr3 101290711 101291139 + 1.75 NA intron (NM_016247, intron 4 of 18) intron (NM_016247, intron 4 of 18) 29650 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 326.25-15 chr7 81035888 81036132 + 1.75 NA Intergenic Intergenic -113621 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 225-30 chr5 118910380 118910544 + 1.75 NA intron (NM_001308081, intron 4 of 5) MLT1A0-int|LTR|ERVL-MaLR -64124 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 314-12 chr4 170408149 170408450 + 1.75 NA Intergenic Intergenic 181708 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 218-30 chr3 1496702 1496854 + 1.75 NA Intergenic Intergenic 403754 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 187.25-8 chr1 217301754 217301899 + 1.75 NA Intergenic Intergenic -164124 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 243.5-27 chr7 11179211 11179364 + 1.75 NA Intergenic L1MB2|LINE|L1 205415 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 252.25-22 chr7 125031710 125031999 + 1.75 NA intron (NR_125718, intron 4 of 10) MLT1H|LTR|ERVL-MaLR -101871 NR_003103 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 297.25-9 chr13 32180620 32180981 + 1.75 NA intron (NM_023037, intron 23 of 60) intron (NM_023037, intron 23 of 60) 131154 NM_001136571 646799 Hs.569254 NM_001136571 ENSG00000189167 ZAR1L Z3CXXC7|ZAR2 zygote arrest 1 like protein-coding 152.5-108 chr9 125139811 125139922 + 1.75 NA intron (NM_173690, intron 2 of 18) intron (NM_173690, intron 2 of 18) 3662 NM_001144877 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 265.25-16 chr19 37611329 37611516 + 1.75 NA intron (NM_001172225, intron 4 of 4) intron (NM_001172225, intron 4 of 4) 16546 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 323-4 chr10 100159058 100159325 + 1.75 NA intron (NR_144757, intron 7 of 10) L1ME3Cz|LINE|L1 26838 NR_144755 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 375.5-4 chr3 46236961 46237234 + 1.75 NA Intergenic L1MA4A|LINE|L1 -5284 NM_178328 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 266.5-13 chr2 51007511 51007749 + 1.75 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 24502 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 337.5-9 chr6 51391083 51391354 + 1.75 NA Intergenic MamTip2|DNA|hAT-Tip100 -230652 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 263-2 chr1 183464275 183464487 + 1.75 NA intron (NR_040063, intron 3 of 4) intron (NR_040063, intron 3 of 4) 7601 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 232.5-46 chr7 41851086 41851394 + 1.75 NA Intergenic L2a|LINE|L2 -148150 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 407.25-7 chr6 107562624 107563015 + 1.75 NA intron (NM_018013, intron 4 of 6) intron (NM_018013, intron 4 of 6) 72702 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 211.25-37 chr8 56290529 56290737 + 1.75 NA Intergenic Intergenic 30143 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 420.5-2 chr18 60841362 60841768 + 1.75 NA Intergenic L1PA13|LINE|L1 -468790 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 392.5-7 chr5 73831648 73831873 + 1.75 NA intron (NM_001244364, intron 1 of 27) AluSp|SINE|Alu 18214 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 289.5-19 chr4 14539829 14540061 + 1.75 NA intron (NR_126435, intron 5 of 6) L1PA8A|LINE|L1 348224 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 147.75-92 chrX 40549518 40549640 + 1.75 NA Intergenic L1MA9|LINE|L1 -31391 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 167-30 chr2 39316488 39316620 + 1.75 NA intron (NM_003618, intron 12 of 33) intron (NM_003618, intron 12 of 33) -72571 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 259.5-26 chr7 82812013 82812211 + 1.75 NA intron (NM_033026, intron 20 of 24) intron (NM_033026, intron 20 of 24) 350772 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 191.25-60 chr8 119413083 119413302 + 1.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -3254 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 205-32 chr3 176340097 176340333 + 1.75 NA Intergenic L1MA4A|LINE|L1 95664 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 266-9 chr15 67588485 67588672 + 1.75 NA intron (NM_001206804, intron 6 of 21) L2c|LINE|L2 39484 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 236-18 chr18 4382710 4382891 + 1.75 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 72466 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 401.5-5 chr8 139442448 139442832 + 1.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 260483 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 406-5 chr3 94233452 94233757 + 1.75 NA Intergenic L4_A_Mam|LINE|RTE-X 170543 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 247-8 chr14 81170874 81171089 + 1.75 NA Intergenic L1P4a|LINE|L1 31853 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 156-66 chr8 51019965 51020169 + 1.75 NA Intergenic Intergenic 789378 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 149.5-34 chr15 94919936 94920083 + 1.75 NA Intergenic Intergenic 64646 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 230.5 chr1 233343543 233343798 + 1.75 NA intron (NM_032435, intron 1 of 9) MIR|SINE|MIR 15946 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 239-14 chr13 112173412 112173681 + 1.75 NA Intergenic Intergenic -12836 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 182.75-3 chr11 24101140 24101251 + 1.75 NA Intergenic L1PB4|LINE|L1 -395858 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 285.25-22 chr8 53311459 53311774 + 1.75 NA Intergenic L2c|LINE|L2 -59919 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 274.25-7 chr2 68549758 68549957 + 1.75 NA intron (NM_173545, intron 8 of 9) L1MEb|LINE|L1 82272 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 179.25-53 chr9 31948646 31948752 + 1.75 NA Intergenic L1M3c|LINE|L1 -435904 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 268.5-9 chr14 57011950 57012171 + 1.75 NA Intergenic L1ME1|LINE|L1 198902 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 242.5-41 chrX 54931514 54931707 + 1.75 NA TTS (NM_016157) TTS (NM_016157) 4305 NR_145717 109616961 NR_145717 ENSG00000221750 SNORA11G - small nucleolar RNA, H/ACA box 11G snoRNA 134.75-33 chr2 106907592 106907719 + 1.75 NA Intergenic Intergenic -20546 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 288.5-4 chr14 44688046 44688252 + 1.75 NA Intergenic L2a|LINE|L2 110977 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 273.25-5 chr2 110971525 110971874 + 1.75 NA intron (NM_001371254, intron 13 of 18) intron (NM_001371254, intron 13 of 18) 143889 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 293.5-13 chr2 125284048 125284307 + 1.75 NA Intergenic Intergenic 833808 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 148-47 chr4 93821087 93821237 + 1.75 NA Intergenic MER63C|DNA|hAT-Blackjack -7591 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 351.75-4 chr5 11750854 11751182 + 1.75 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 153428 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 117.5-70 chr4 113342206 113342274 + 1.75 NA intron (NM_001354275, intron 33 of 43) intron (NM_001354275, intron 33 of 43) 49401 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 177.5-37 chr2 128084559 128084909 + 1.75 NA Intergenic Intergenic -6466 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 328.25-10 chr4 33700765 33701003 + 1.75 NA Intergenic Intergenic 339009 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 327.75-9 chr8 82185354 82185732 + 1.75 NA Intergenic Intergenic -343257 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 332.5-11 chr5 131022991 131023211 + 1.75 NA Intergenic Intergenic 142155 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 297-16 chr3 109837558 109837821 + 1.75 NA Intergenic L2a|LINE|L2 234861 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 251-25 chr5 148152501 148152699 + 1.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -15946 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 201.75-34 chr6 119825007 119825226 + 1.75 NA intron (NR_134600, intron 2 of 3) L1MEc|LINE|L1 -190063 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 439-2 chr20 55420686 55421097 + 1.75 NA non-coding (NR_110064, exon 3 of 3) non-coding (NR_110064, exon 3 of 3) -2152 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 115.25-40 chr17 61903943 61904021 + 1.75 NA intron (NM_001351695, intron 9 of 24) HAL1|LINE|L1 24000 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 261.25-4 chr15 62531759 62531937 + 1.75 NA Intergenic Intergenic 113333 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 434.5 chr1 193738554 193738934 + 1.75 NA Intergenic Intergenic 433999 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 290.25-14 chr8 89111000 89111174 + 1.75 NA Intergenic L1MA9|LINE|L1 646624 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 208.75-5 chr10 67756338 67756478 + 1.75 NA Intergenic L1MA4|LINE|L1 -60213 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 153.75-6 chr1 74342104 74342294 + 1.75 NA intron (NM_015978, intron 7 of 24) intron (NM_015978, intron 7 of 24) 106812 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 300.25-5 chr17 60321598 60321928 + 1.75 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 70370 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 234.25-18 chr2 179924810 179924990 + 1.75 NA Intergenic L1ME2|LINE|L1 -63288 NM_001352808 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 231-17 chr16 52537354 52537653 + 1.75 NA intron (NM_001146188, intron 1 of 7) intron (NM_001146188, intron 1 of 7) 9640 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 274.75-11 chr2 233846966 233847260 + 1.75 NA intron (NM_001282962, intron 3 of 6) intron (NM_001282962, intron 3 of 6) 7422 NM_018410 55355 Hs.532968 NM_018410 ENSG00000123485 HJURP FAKTS|URLC9|hFLEG1 Holliday junction recognition protein protein-coding 174.75-37 chr4 45205109 45205208 + 1.75 NA Intergenic L1PB4|LINE|L1 -478524 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 382.5 chr1 23645271 23645619 + 1.75 NA Intergenic Intergenic 18111 NM_001348075 259283 Hs.523369 NM_001348075 MDS2 - myelodysplastic syndrome 2 translocation associated protein-coding 202-14 chr22 32444557 32444737 + 1.75 NA intron (NM_174932, intron 5 of 14) intron (NM_174932, intron 5 of 14) 12739 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 175-35 chr20 59765600 59765857 + 1.75 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 44518 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 244.5-20 chr21 33646589 33646781 + 1.75 NA intron (NM_001001132, intron 1 of 29) intron (NM_001001132, intron 1 of 29) 4184 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 316.5-2 chr12 106894008 106894245 + 1.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -61596 NM_001319661 90488 Hs.257664 NM_152261 ENSG00000151135 TMEM263 C12orf23 transmembrane protein 263 protein-coding 142.5-37 chr17 76204555 76204672 + 1.75 NA intron (NM_052916, intron 2 of 18) intron (NM_052916, intron 2 of 18) 35880 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 233.5-5 chr10 17978282 17978497 + 1.75 NA intron (NM_001282734, intron 4 of 11) L2a|LINE|L2 26471 NM_001145195 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 311-17 chr9 27722860 27723233 + 1.75 NA Intergenic Intergenic -149180 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 267.5-7 chr15 53641443 53641651 + 1.75 NA intron (NM_182758, intron 14 of 19) L1M4|LINE|L1 -100444 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 160-24 chr2 211078539 211078682 + 1.75 NA Intergenic Intergenic 461039 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 269.5-26 chr7 29110804 29111047 + 1.75 NA intron (NM_001371268, intron 3 of 9) MLT1D|LTR|ERVL-MaLR -14108 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 275-12 chr3 169641848 169642170 + 1.75 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 21703 NM_004991 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 252.75-5 chr12 6150117 6150348 + 1.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -25557 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 193.5-60 chr5 63056532 63056678 + 1.75 NA Intergenic L1MB2|LINE|L1 477786 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 180-66 chr8 65798583 65798739 + 1.75 NA intron (NM_001242318, intron 1 of 12) L1ME2|LINE|L1 -9604 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 283.25-15 chr7 48450094 48450327 + 1.75 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 278752 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 250.75-23 chr7 12596750 12596933 + 1.75 NA intron (NM_033128, intron 1 of 13) L2|LINE|L2 7318 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 228-46 chr8 107337929 107338104 + 1.75 NA intron (NM_001199859, intron 2 of 8) AluJb|SINE|Alu -1501 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 358.25-2 chr10 43872174 43872469 + 1.75 NA intron (NR_038268, intron 3 of 4) intron (NR_038268, intron 3 of 4) 12910 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 239.75-10 chr14 67077834 67078227 + 1.75 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -111410 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 370.25-5 chr2 128815835 128816190 + 1.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -48588 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 309-9 chr16 62031874 62032166 + 1.75 NA intron (NM_001796, intron 1 of 11) intron (NM_001796, intron 1 of 11) 4418 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 141-58 chr4 187631139 187631270 + 1.75 NA intron (NR_110436, intron 2 of 2) L1M3e|LINE|L1 41437 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 147.75-9 chr10 80366561 80366651 + 1.75 NA intron (NM_032372, intron 4 of 4) intron (NM_032372, intron 4 of 4) 9825 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 169.5-72 chr6 154352687 154353076 + 1.75 NA intron (NM_015553, intron 1 of 11) intron (NM_015553, intron 1 of 11) 3885 NM_015553 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 328.5-8 chr17 15307532 15307831 + 1.75 NA intron (NM_031898, intron 8 of 8) intron (NM_031898, intron 8 of 8) 33916 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 357.25-4 chr20 56920989 56921416 + 1.75 NA Intergenic AluSx|SINE|Alu 291896 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 181.75-4 chr1 191916562 191916722 + 1.75 NA Intergenic MIR|SINE|MIR -241820 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 381.75-2 chr3 14570755 14571414 + 1.75 NA Intergenic MER20|DNA|hAT-Charlie -30742 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 286.25-7 chr2 29715444 29715666 + 1.75 NA intron (NM_004304, intron 2 of 28) intron (NM_004304, intron 2 of 28) 206031 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 254.25-19 chr5 91176293 91176453 + 1.75 NA Intergenic Intergenic 138029 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 215.25-11 chr15 88052341 88052568 + 1.75 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) -106186 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 157.75-49 chr21 31452331 31452500 + 1.75 NA intron (NM_001353690, intron 1 of 27) AluSx3|SINE|Alu 106672 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 405-5 chr22 35150200 35150490 + 1.75 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 80711 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 254.25-2 chr1 78638306 78638578 + 1.75 NA intron (NM_006820, intron 6 of 8) L1MDa|LINE|L1 -11347 NR_135640 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 363.75-5 chr3 30709529 30709856 + 1.75 NA Intergenic L1ME4c|LINE|L1 103091 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 176-42 chr7 105219891 105220006 + 1.75 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 49129 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 215.75-31 chr9 78969017 78969233 + 1.75 NA Intergenic Intergenic 176541 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 315.75-9 chr6 158864829 158865138 + 1.75 NA Intergenic AluSz|SINE|Alu -4831 NR_160980 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 197.25-9 chr10 68505243 68505464 + 1.75 NA intron (NM_001324317, intron 2 of 7) AluJb|SINE|Alu 12865 NR_136737 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 190.25-38 chr4 31983503 31983645 + 1.75 NA Intergenic LTR49|LTR|ERV1 -13805 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 175.75-21 chr2 182615624 182615775 + 1.75 NA Intergenic MSTD|LTR|ERVL-MaLR -92854 NM_001003683 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 276.75-11 chr2 121826308 121826628 + 1.75 NA Intergenic Intergenic 70817 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 208.75-12 chr14 50271545 50271770 + 1.75 NA intron (NM_024884, intron 6 of 9) AluJo|SINE|Alu 28289 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 274.75-17 chr4 47674009 47674247 + 1.75 NA intron (NM_006587, intron 10 of 21) intron (NM_006587, intron 10 of 21) 21459 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 207-42 chr5 26884993 26885249 + 1.75 NA intron (NM_016279, intron 11 of 11) intron (NM_016279, intron 11 of 11) 153465 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 388.5-5 chr2 108085227 108085566 + 1.75 NA Intergenic L1MEf|LINE|L1 -32641 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 324.5-2 chr10 55892299 55892546 + 1.75 NA Intergenic Intergenic -264480 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 159-21 chr14 36630957 36631099 + 1.75 NA Intergenic MIRc|SINE|MIR -26540 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 370-7 chr2 129383441 129383905 + 1.75 NA Intergenic L1MD2|LINE|L1 -109782 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 257.25-13 chr2 44519702 44519864 + 1.75 NA intron (NM_024766, intron 3 of 10) MIRb|SINE|MIR 157836 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 314.25-6 chr17 58244353 58244636 + 1.75 NA intron (NM_006151, intron 3 of 12) LTR16A1|LTR|ERVL 5910 NR_027647 4025 Hs.234742 NM_006151 ENSG00000167419 LPO SPO lactoperoxidase protein-coding 265-8 chr14 74077438 74077661 + 1.75 NA intron (NM_001278593, intron 1 of 11) MSTB2|LTR|ERVL-MaLR 6904 NM_001278594 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 290.5-24 chr7 106551554 106551953 + 1.75 NA Intergenic MamGypsy2-I|LTR|Gypsy 109405 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 520.25-2 chr2 47604385 47605147 + 1.75 NA Intergenic MER39|LTR|ERV1 -34435 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 197.25-55 chr6 145216561 145216695 + 1.75 NA Intergenic Intergenic 470249 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 227.5-60 chr9 33023447 33023610 + 1.75 NA intron (NM_001368996, intron 1 of 7) L2c|LINE|L2 1592 NM_001368999 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 222-38 chr5 83376096 83376276 + 1.75 NA Intergenic Intergenic -95488 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 281-2 chr10 18083651 18083969 + 1.75 NA Intergenic Intergenic -56614 NM_201597 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 266.5-12 chr18 32572902 32573135 + 1.75 NA Intergenic L1PB|LINE|L1 61355 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 265.5-22 chr5 78231991 78232257 + 1.75 NA intron (NM_003664, intron 3 of 26) intron (NM_003664, intron 3 of 26) 62574 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 273.25-6 chr2 118668956 118669196 + 1.75 NA Intergenic Intergenic -66110 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 322.5-8 chr2 129140027 129140252 + 1.75 NA Intergenic Intergenic 133752 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 273.25-13 chr5 24986371 24986747 + 1.75 NA Intergenic Intergenic -145976 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 295.75-7 chr3 25631185 25631428 + 1.75 NA intron (NM_001330700, intron 10 of 35) intron (NM_001330700, intron 10 of 35) 33066 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 331.25-6 chr4 83962108 83962545 + 1.75 NA Intergenic Intergenic 336843 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 295.25-13 chr5 172477154 172477399 + 1.75 NA Intergenic L1MC4|LINE|L1 -22751 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 183-20 chr14 44946942 44947081 + 1.75 NA intron (NM_017658, intron 1 of 4) MLT1D|LTR|ERVL-MaLR 14474 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 262.5-14 chr18 53620873 53621161 + 1.75 NA Intergenic L1MD|LINE|L1 -39958 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 313.5-13 chr4 121648121 121648363 + 1.75 NA Intergenic MIRb|SINE|MIR 48738 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 236.25-25 chr3 103339200 103339444 + 1.75 NA Intergenic MIRb|SINE|MIR 184794 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 286.75-13 chr9 13406338 13406650 + 1.75 NA non-coding (NR_033863, exon 3 of 3) non-coding (NR_033863, exon 3 of 3) 24835 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 253.25-20 chr3 108113204 108113684 + 1.75 NA Intergenic Intergenic -11620 NR_110030 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 202.75-2 chr1 87282079 87282229 + 1.75 NA Intergenic MLT2B3|LTR|ERVL -46726 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 172-20 chr17 59709346 59709518 + 1.75 NA intron (NM_001329394, intron 1 of 11) MIRc|SINE|MIR 1778 NM_030938 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 282.5-5 chr12 29066323 29066617 + 1.75 NA Intergenic Intergenic -82808 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 134.5-76 chr5 96331587 96331715 + 1.75 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 100508 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 145.75-76 chr8 137674161 137674245 + 1.75 NA Intergenic L1MD1|LINE|L1 -260615 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 286-14 chr2 55123399 55123648 + 1.75 NA intron (NM_001321904, intron 1 of 9) MER45R|DNA|hAT-Tip100 14308 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 150.75-20 chr17 52830863 52830953 + 1.75 NA Intergenic Intergenic -31213 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 252.25-3 chr12 104153136 104153337 + 1.75 NA Intergenic Intergenic -15026 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 250.75-9 chr17 69735121 69735342 + 1.75 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 141244 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 122.5-2 chr1 43197715 43197848 + 1.75 NA intron (NM_001195831, intron 7 of 23) intron (NM_001195831, intron 7 of 23) -25211 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 319.25-5 chr3 159581978 159582306 + 1.75 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 186470 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 254.75-10 chr14 44799591 44799759 + 1.75 NA promoter-TSS (NR_146457) promoter-TSS (NR_146457) -549 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 200.25-47 chr7 112212467 112212689 + 1.75 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 5883 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 271.25 chr11 12846698 12846952 + 1.75 NA intron (NM_021961, intron 3 of 12) intron (NM_021961, intron 3 of 12) 142723 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 283.5-11 chr21 28905309 28905675 + 1.75 NA Intergenic Intergenic -20119 NM_182749 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 317.5-7 chr4 31497796 31497990 + 1.75 NA Intergenic L2a|LINE|L2 -8651 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 239.25-8 chr11 110349184 110349488 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL -5778 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 173.75-10 chr10 123590628 123590727 + 1.75 NA Intergenic L1MEc|LINE|L1 -75678 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 284.75-5 chr16 66482537 66482789 + 1.75 NA 3' UTR (NM_001178020, exon 5 of 5) 3' UTR (NM_001178020, exon 5 of 5) -6261 NR_109960 101927726 Hs.739193 NR_109960 ENSG00000261656 BEAN1-AS1 CTD-2258A20.5 BEAN1 antisense RNA 1 ncRNA 244.5-2 chr1 165461504 165461765 + 1.75 NA Intergenic L2b|LINE|L2 -16279 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 348.5-7 chr5 147829912 147830156 + 1.75 NA intron (NM_001354966, intron 2 of 4) intron (NM_001354966, intron 2 of 4) 9197 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 282-13 chr15 68493411 68493601 + 1.75 NA Intergenic Intergenic -24867 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 333-14 chr8 117798663 117798991 + 1.75 NA TTS (NM_000127) TTS (NM_000127) 122086 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 214.25-43 chr7 58008915 58009071 + 1.75 NA Intergenic ALR/Alpha|Satellite|centr 558816 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 228.75-25 chr20 10083634 10083891 + 1.75 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 48775 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 255.75-20 chr5 14383289 14383495 + 1.75 NA intron (NM_007118, intron 21 of 56) intron (NM_007118, intron 21 of 56) -80591 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 200.25-39 chr6 55944913 55945168 + 1.75 NA Intergenic Intergenic -69450 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 155.25-73 chr9 3089307 3089410 + 1.75 NA Intergenic L1M4|LINE|L1 -92231 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 148.25-55 chr4 36531564 36531671 + 1.75 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -105189 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 205-34 chr5 129652436 129652684 + 1.75 NA intron (NM_133638, intron 13 of 22) intron (NM_133638, intron 13 of 22) -95534 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 231.25-26 chr3 45517406 45517567 + 1.75 NA intron (NM_001368263, intron 16 of 20) intron (NM_001368263, intron 16 of 20) -7941 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 217.75-32 chr5 83451849 83452007 + 1.75 NA Intergenic LTR78B|LTR|ERV1 -19746 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 393-3 chr16 81846489 81846784 + 1.75 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 67345 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 261.5-3 chr1 157247033 157247224 + 1.75 NA Intergenic L1MB7|LINE|L1 -108537 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 239.75-6 chr11 20605952 20606229 + 1.75 NA intron (NM_004211, intron 3 of 15) intron (NM_004211, intron 3 of 15) 6690 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 281.75-19 chr7 144787174 144787367 + 1.75 NA intron (NM_001350887, intron 1 of 6) intron (NM_001350887, intron 1 of 6) -48372 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 316.75 chr10 27549532 27549808 + 1.75 NA Intergenic L2a|LINE|L2 45366 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 252-23 chr5 55728809 55729050 + 1.75 NA Intergenic L1MC4|LINE|L1 -9088 NM_001142549 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 298.25-2 chr1 151224404 151224574 + 1.75 NA intron (NM_001135638, intron 3 of 15) MIR|SINE|MIR 25937 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 132.25-20 chr12 13415684 13415780 + 1.75 NA Intergenic L1MA4|LINE|L1 -38987 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 233.25-22 chr21 23630333 23630592 + 1.75 NA Intergenic L1ME1|LINE|L1 -245627 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 160.5-37 chr2 117440001 117440162 + 1.75 NA Intergenic Intergenic -374610 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 190.5-48 chr3 142918849 142919019 + 1.75 NA Intergenic L1MC1|LINE|L1 -7741 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 198.75-44 chr6 143206331 143206492 + 1.75 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 41629 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 173-53 chr8 81854068 81854253 + 1.75 NA Intergenic Intergenic -11874 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 179.25-28 chr3 3215288 3215440 + 1.75 NA Intergenic Intergenic -35647 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 278.75-12 chr6 123318239 123318553 + 1.75 NA intron (NM_006073, intron 23 of 40) MIRb|SINE|MIR -121208 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 125.75-28 chr17 59464154 59464277 + 1.75 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 62642 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 323.25 chr1 42864685 42865039 + 1.75 NA intron (NR_104171, intron 1 of 3) L1M2|LINE|L1 7240 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 246-13 chr2 80587474 80587794 + 1.75 NA intron (NM_001282599, intron 8 of 11) intron (NM_001282599, intron 8 of 11) 274255 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 233.75-21 chr22 42028431 42028645 + 1.75 NA TTS (NM_152613) TTS (NM_152613) 29750 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 268.75-18 chr2 193551748 193551916 + 1.75 NA Intergenic L1MB7|LINE|L1 -792437 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 149.5-87 chr5 121383571 121383684 + 1.75 NA Intergenic Intergenic 61077 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 220.5-7 chr10 53827821 53828014 + 1.75 NA intron (NM_001142773, intron 29 of 31) intron (NM_001142773, intron 29 of 31) -658313 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 205.75 chr1 65665501 65665629 + 1.75 NA Intergenic L1MA9|LINE|L1 -126945 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 190.25-44 chr5 105211114 105211331 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 111748 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 183.25-40 chr4 172320863 172321051 + 1.75 NA intron (NM_001034845, intron 4 of 12) MER44A|DNA|TcMar-Tigger 367960 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 355.25-8 chrX 74280929 74281337 + 1.75 NA intron (NR_028379, intron 2 of 6) MER5A1|DNA|hAT-Charlie 6076 NR_030258 664614 NR_030258 ENSG00000207820 MIR545 MIRN545|hsa-mir-545|mir-545 microRNA 545 ncRNA 200.5-39 chr20 59510810 59511100 + 1.75 NA Intergenic Intergenic -66554 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 226-13 chr2 47183800 47183975 + 1.75 NA Intergenic L1MC4|LINE|L1 -6951 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 216.75-12 chr12 98930305 98930525 + 1.75 NA intron (NM_152788, intron 17 of 25) L1MB7|LINE|L1 -35124 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 219-13 chr17 61756335 61756526 + 1.75 NA intron (NM_032043, intron 14 of 19) intron (NM_032043, intron 14 of 19) 107129 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 201-51 chr8 94266382 94266526 + 1.75 NA Intergenic MIRc|SINE|MIR -4135 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 174.25-17 chr11 28924891 28925090 + 1.75 NA Intergenic Intergenic -447442 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 260.25-14 chr21 18918588 18918848 + 1.75 NA Intergenic MER49|LTR|ERV1 -158906 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 319.25-4 chr18 43588537 43588781 + 1.75 NA Intergenic Intergenic -311169 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 267.5-31 chr7 49871311 49871655 + 1.75 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 96150 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 215.75-9 chr19 53017057 53017258 + 1.75 NA TTS (NM_152473) TTS (NM_152473) 3066 NM_152473 147664 Hs.44329 NM_152473 ENSG00000269526 ERVV-1 ENVV1|HERV-V1 endogenous retrovirus group V member 1, envelope protein-coding 281.5-24 chrX 39148745 39149126 + 1.75 NA Intergenic Intergenic 178427 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 244.25-11 chr16 82758764 82758966 + 1.75 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -14454 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 350.25-3 chr15 54682438 54682758 + 1.75 NA Intergenic L1MEg|LINE|L1 -374149 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 357-4 chr2 61207383 61207746 + 1.75 NA intron (NM_014709, intron 70 of 79) intron (NM_014709, intron 70 of 79) 30146 NR_152210 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 141-19 chr13 69264059 69264188 + 1.75 NA intron (NR_125752, intron 1 of 3) L1PA13|LINE|L1 41777 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 270.5-5 chr10 112895953 112896148 + 1.75 NA Intergenic Intergenic -54197 NM_001367943 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 465.75 chr19 48418077 48418391 + 1.75 NA intron (NM_000836, intron 7 of 12) AluSx1|SINE|Alu 23359 NM_000836 2906 Hs.445015 NM_000836 ENSG00000105464 GRIN2D EB11|EIEE46|GluN2D|NMDAR2D|NR2D glutamate ionotropic receptor NMDA type subunit 2D protein-coding 348.25-3 chr12 119653422 119653652 + 1.75 NA Intergenic L1MEf|LINE|L1 -14596 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 178.5-30 chr2 115723264 115723443 + 1.75 NA intron (NM_001321912, intron 8 of 25) (TTGCTT)n|Simple_repeat|Simple_repeat 379538 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 309.5-13 chr5 28283951 28284258 + 1.75 NA Intergenic Intergenic 3561 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 228.5-36 chr8 118150273 118150418 + 1.75 NA intron (NR_146234, intron 4 of 5) L1MEc|LINE|L1 -38526 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 245.75-17 chr7 4055390 4055654 + 1.75 NA intron (NM_152744, intron 19 of 44) L1MD|LINE|L1 -74163 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 192.5-61 chr8 140523275 140523456 + 1.75 NA 3' UTR (NM_012154, exon 19 of 19) 3' UTR (NM_012154, exon 19 of 19) 11369 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 251-21 chr4 83030220 83030437 + 1.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -4855 NM_001258006 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 179.5-30 chr14 22048168 22048300 + 1.75 NA Intergenic Intergenic -377217 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 244.5-42 chr8 137258258 137258495 + 1.75 NA Intergenic Intergenic 155212 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 187-23 chr2 32772528 32772694 + 1.75 NA intron (NM_017735, intron 13 of 19) MER47A|DNA|TcMar-Tigger -52822 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 209.25-9 chr14 54593209 54593379 + 1.75 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 25682 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 239-20 chr2 58625617 58625828 + 1.75 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 104969 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 178.5-23 chr17 73495049 73495183 + 1.75 NA intron (NM_001144952, intron 2 of 44) intron (NM_001144952, intron 2 of 44) -18567 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 329.25-6 chr5 125515662 125515862 + 1.75 NA intron (NR_109887, intron 2 of 3) intron (NR_109887, intron 2 of 3) 22501 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 344.25-8 chr9 8840481 8840780 + 1.75 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -17388 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 236.5-41 chr6 64994062 64994218 + 1.75 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -307278 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 361-4 chr5 156895057 156895292 + 1.75 NA Intergenic Intergenic 44879 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 148.75-47 chr4 62895920 62896014 + 1.75 NA Intergenic L1MC4|LINE|L1 -734202 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 469.5 chr14 31934743 31935193 + 1.75 NA Intergenic L3|LINE|CR1 -9885 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 243-17 chr4 31254947 31255167 + 1.75 NA Intergenic THE1D|LTR|ERVL-MaLR 83913 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 235.5-17 chr14 26002738 26002909 + 1.75 NA Intergenic L1MC|LINE|L1 550607 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 164.25-7 chr1 199403928 199404041 + 1.75 NA Intergenic Intergenic 255386 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 363.5-6 chr3 54109484 54109786 + 1.75 NA Intergenic L1M7|LINE|L1 -12917 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 348-4 chr18 76431290 76431891 + 1.75 NA intron (NM_014643, intron 3 of 6) MSTB|LTR|ERVL-MaLR -60062 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 177.75-27 chr20 39397712 39397909 + 1.75 NA Intergenic Intergenic -173062 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 335.75-4 chr2 22143617 22143963 + 1.75 NA Intergenic Intergenic -392689 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 340.5-3 chr14 55635853 55636281 + 1.75 NA intron (NR_073129, intron 10 of 45) intron (NR_073129, intron 10 of 45) 55860 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 366.75-4 chr20 14828672 14829020 + 1.75 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 100672 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 260.5-28 chr6 48239974 48240175 + 1.75 NA Intergenic Intergenic -171385 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 221.75-15 chr2 126777725 126777946 + 1.75 NA Intergenic Intergenic -121055 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 147.5-67 chr5 35415378 35415471 + 1.75 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -184937 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 173.25-4 chr1 118221565 118221851 + 1.75 NA Intergenic Intergenic -36480 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 188.25-42 chr3 187994285 187994486 + 1.75 NA Intergenic Intergenic -17978 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 374.5 chr1 94701021 94701383 + 1.75 NA intron (NR_160779, intron 2 of 5) intron (NR_160779, intron 2 of 5) 44698 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 182.5-75 chr8 138652384 138652589 + 1.75 NA intron (NM_152888, intron 45 of 64) intron (NM_152888, intron 45 of 64) -154756 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 196.5-79 chr9 100108968 100109147 + 1.75 NA intron (NR_134606, intron 2 of 16) intron (NR_134606, intron 2 of 16) 9814 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 200.75-44 chr8 122585911 122586110 + 1.75 NA Intergenic Intergenic -17366 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 241.5-13 chr15 52658290 52658535 + 1.75 NA intron (NM_019600, intron 2 of 12) intron (NM_019600, intron 2 of 12) -6372 NM_001286495 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 404.25-3 chr2 67700050 67700449 + 1.75 NA Intergenic Intergenic 125313 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 200-38 chr5 56733841 56733994 + 1.75 NA Intergenic Intergenic 38954 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 239.5-3 chr1 203102835 203103094 + 1.75 NA Intergenic MIR|SINE|MIR -16952 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 232.75-19 chr5 135938929 135939174 + 1.75 NA intron (NR_152421, intron 5 of 5) MIRc|SINE|MIR 8754 NR_152421 26223 Hs.591275 NM_012159 FBXL21P FBL3B|FBXL21|FBXL3B|FBXL3P|Fbl21 F-box and leucine rich repeat protein 21, pseudogene pseudo 211.5-48 chr6 121671250 121671463 + 1.75 NA Intergenic Intergenic 235710 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 221.75-27 chr8 27558980 27559169 + 1.75 NA Intergenic Intergenic 51677 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 206.5-16 chr14 45136350 45136511 + 1.75 NA exon (NM_020937, exon 1 of 23) exon (NM_020937, exon 1 of 23) 491 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 183-49 chr4 41120081 41120269 + 1.75 NA intron (NM_173075, intron 2 of 16) intron (NM_173075, intron 2 of 16) 94367 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 341.5-7 chr7 7750700 7751119 + 1.75 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -32302 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 138-10 chr11 20318322 20318468 + 1.75 NA Intergenic AluJb|SINE|Alu -45290 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 226-4 chr10 67763235 67763466 + 1.75 NA Intergenic Intergenic -67155 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 278.5-2 chr1 213377820 213378022 + 1.75 NA Intergenic Intergenic 326680 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 309.25-13 chr8 65604995 65605302 + 1.75 NA intron (NM_001286702, intron 5 of 5) intron (NM_001286702, intron 5 of 5) 29029 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 338.75-4 chr3 148335594 148335954 + 1.75 NA intron (NR_146712, intron 3 of 4) L1ME3F|LINE|L1 54883 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 226.5-2 chr1 36688140 36688311 + 1.75 NA Intergenic LTR16C|LTR|ERVL -204911 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 214.5-51 chr6 36874308 36874537 + 1.75 NA intron (NM_001286636, intron 1 of 9) L2c|LINE|L2 381 NM_016059 51645 Hs.27693 NM_016059 ENSG00000137168 PPIL1 CGI-124|CYPL1|PPIase|hCyPX peptidylprolyl isomerase like 1 protein-coding 263.25-5 chr2 98972665 98972826 + 1.75 NA Intergenic L1MA4|LINE|L1 -36520 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 195.75-12 chr12 119065909 119066095 + 1.75 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 84461 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 268-14 chr20 2311474 2311749 + 1.75 NA intron (NM_003245, intron 4 of 12) intron (NM_003245, intron 4 of 12) 15610 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 215.25-40 chr8 141896523 141896729 + 1.75 NA Intergenic L1MD2|LINE|L1 -110313 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 216.25-32 chr5 148356428 148356622 + 1.75 NA intron (NR_105057, intron 2 of 4) MER115|DNA|hAT-Tip100 20966 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 366.75-2 chr13 78741047 78741303 + 1.75 NA Intergenic Intergenic -82020 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 278-17 chr4 30351704 30351946 + 1.75 NA Intergenic Intergenic -368544 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 389-2 chr14 45903929 45904293 + 1.75 NA Intergenic Intergenic -160048 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 185-17 chr18 68611044 68611237 + 1.75 NA Intergenic Intergenic 103968 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 274-11 chr16 71190855 71191211 + 1.75 NA intron (NM_001198543, intron 1 of 18) L1MC5a|LINE|L1 39689 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 337-15 chr9 29878659 29879021 + 1.75 NA Intergenic Intergenic 529614 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 499.25 chr17 63422575 63423070 + 1.75 NA 3' UTR (NM_025185, exon 26 of 26) 3' UTR (NM_025185, exon 26 of 26) 17445 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 386-2 chr5 116871244 116871586 + 1.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -109206 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 242.5-14 chr2 126510690 126510918 + 1.75 NA Intergenic Intergenic -145131 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 189.5-39 chr3 145130751 145130968 + 1.75 NA Intergenic Intergenic 938326 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 328.5-13 chr4 69092355 69092643 + 1.75 NA intron (NM_001349568, intron 2 of 6) intron (NM_001349568, intron 2 of 6) -3975 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 251.5-18 chr2 71186838 71187134 + 1.75 NA 3' UTR (NM_020459, exon 4 of 4) 3' UTR (NM_020459, exon 4 of 4) 40117 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 477-3 chr14 70369805 70370290 + 1.75 NA 3' UTR (NM_018373, exon 4 of 4) 3' UTR (NM_018373, exon 4 of 4) -10364 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 182.25-16 chr16 60265408 60265546 + 1.75 NA Intergenic Intergenic 94316 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 239.75-23 chr3 111121289 111121629 + 1.75 NA intron (NM_001243288, intron 3 of 8) intron (NM_001243288, intron 3 of 8) 49643 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 228.25-22 chr3 9645449 9645592 + 1.75 NA Intergenic LTR54|LTR|ERV1 -3985 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 259-33 chrX 98068513 98068770 + 1.75 NA Intergenic Intergenic -504106 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 259-25 chr4 103843295 103843536 + 1.75 NA Intergenic Intergenic -123430 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 382.25-2 chr13 112110935 112111298 + 1.75 NA Intergenic Intergenic 3997 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 421.75-2 chr18 75911955 75912221 + 1.75 NA Intergenic Intergenic -199685 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 128.25-54 chr4 43820422 43820567 + 1.75 NA Intergenic L4_A_Mam|LINE|RTE-X -196367 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 340.25-7 chr5 167412666 167413059 + 1.75 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -160797 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 246.5-11 chr22 28412402 28412665 + 1.75 NA intron (NM_001145418, intron 2 of 22) L2c|LINE|L2 -47336 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 457.5-2 chr5 158597337 158597822 + 1.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -187806 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 319.5-16 chr7 19405382 19405585 + 1.75 NA Intergenic Intergenic -260062 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 151.25-60 chr9 2404881 2404981 + 1.75 NA Intergenic L1M3b|LINE|L1 -216856 NM_001322226 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 294-3 chr10 110388735 110389072 + 1.75 NA Intergenic Intergenic -83983 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 280-18 chr4 66139261 66139628 + 1.75 NA Intergenic AluSp|SINE|Alu -137380 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 159-22 chr14 59995244 59995375 + 1.75 NA intron (NR_075071, intron 17 of 32) intron (NR_075071, intron 17 of 32) 75596 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 169-54 chr8 126725717 126725862 + 1.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -167311 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 323.5-3 chr11 35392889 35393096 + 1.75 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 26566 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 342-10 chr7 125643871 125644315 + 1.75 NA Intergenic LTR44|LTR|ERV1 -379802 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 333.75-7 chr9 68970383 68970733 + 1.75 NA intron (NR_110647, intron 1 of 2) intron (NR_110647, intron 1 of 2) 5283 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 137.5-92 chr5 9393716 9393864 + 1.75 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -117543 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 279.75 chr1 159497140 159497411 + 1.75 NA Intergenic L1M2|LINE|L1 38732 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 202.25-16 chr2 17752136 17752358 + 1.75 NA intron (NM_024624, intron 1 of 26) MER2|DNA|TcMar-Tigger 1563 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 236-40 chrX 144027755 144027967 + 1.75 NA Intergenic L1MEg|LINE|L1 143790 NR_121210 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 207.5-57 chr7 32133828 32134175 + 1.75 NA intron (NM_001322059, intron 3 of 17) L1MEf|LINE|L1 -62565 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 141.5-85 chr5 8947734 8947825 + 1.75 NA Intergenic Intergenic 106116 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 250.75-22 chr6 134364395 134364670 + 1.75 NA Intergenic MIR|SINE|MIR -46474 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 176.75-16 chr16 30022987 30023232 + 1.75 NA promoter-TSS (NM_001109660) promoter-TSS (NM_001109660) -225 NM_001353379 146378 Hs.651588 NM_001109659 ENSG00000167194 C16orf92 - chromosome 16 open reading frame 92 protein-coding 331.25-3 chr2 229194678 229194903 + 1.75 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 37302 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 229-33 chr7 66225520 66225798 + 1.75 NA intron (NM_003596, intron 1 of 5) intron (NM_003596, intron 1 of 5) 20325 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 175.25-47 chr5 169696492 169696680 + 1.75 NA intron (NR_156756, intron 10 of 52) MER113B|DNA|hAT-Charlie 59311 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 233.75-29 chr6 132237676 132237844 + 1.75 NA Intergenic Intergenic 103782 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 229.25-7 chr14 69096462 69096713 + 1.75 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 56012 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 164-47 chr5 75753796 75753923 + 1.75 NA Intergenic Intergenic -36422 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 430.75 chr17 67189358 67189686 + 1.75 NA intron (NM_001330447, intron 11 of 32) intron (NM_001330447, intron 11 of 32) -55254 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 243.25-2 chr10 10777684 10777878 + 1.75 NA intron (NM_001326317, intron 2 of 14) L2c|LINE|L2 17133 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 294.25-9 chr3 172206586 172206861 + 1.75 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 166192 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 128.25-22 chr12 99434447 99434582 + 1.75 NA intron (NM_152788, intron 11 of 25) L1ME3G|LINE|L1 -213239 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 354.5-7 chr7 3365346 3365674 + 1.75 NA intron (NM_152744, intron 1 of 44) L1MC5a|LINE|L1 64258 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 161.25-80 chr9 79041749 79041841 + 1.75 NA Intergenic L1MD|LINE|L1 103871 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 204.75-14 chr15 33618548 33618784 + 1.75 NA intron (NM_001243996, intron 19 of 102) intron (NM_001243996, intron 19 of 102) 307699 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 280-5 chr10 4525537 4525894 + 1.75 NA Intergenic MIR|SINE|MIR 119246 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 273-25 chr6 49440965 49441182 + 1.75 NA intron (NM_000255, intron 10 of 12) intron (NM_000255, intron 10 of 12) 22180 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 268.75-28 chr7 88065207 88065397 + 1.75 NA intron (NM_001324421, intron 3 of 28) L1ME4a|LINE|L1 131051 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 340.25-2 chr2 77320410 77320729 + 1.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 201807 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 394.25-3 chr6 45611920 45612282 + 1.75 NA Intergenic Intergenic 189826 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 365-7 chr7 31498677 31499093 + 1.75 NA Intergenic Intergenic -15186 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 326-5 chr11 11846890 11847137 + 1.75 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 5590 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 233.5-16 chr14 38952679 38952830 + 1.75 NA Intergenic L2a|LINE|L2 -35872 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 167.5-31 chr17 59000596 59000751 + 1.75 NA intron (NM_001320990, intron 23 of 23) intron (NM_001320990, intron 23 of 23) 106207 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 196.25-6 chr10 115478709 115478889 + 1.75 NA intron (NM_207303, intron 24 of 28) intron (NM_207303, intron 24 of 28) 385434 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 274.25-13 chr6 44969713 44969877 + 1.75 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 227975 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 236.25-41 chr7 154950245 154950493 + 1.75 NA TTS (NR_024476) TTS (NR_024476) 21852 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 251.25-5 chr11 8720146 8720340 + 1.75 NA intron (NM_005418, intron 7 of 22) intron (NM_005418, intron 7 of 22) 34804 NR_002977 677826 Hs.745552 NR_002977 ENSG00000212607 SNORA3B ACA3-2|SNORA45|SNORA45B small nucleolar RNA, H/ACA box 3B snoRNA 138.25-41 chr2 72597143 72597400 + 1.75 NA intron (NR_135774, intron 6 of 19) L1MC2|LINE|L1 228762 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 118-45 chr3 175136830 175136905 + 1.75 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -21625 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 170-10 chr12 109393392 109393549 + 1.75 NA intron (NM_001101421, intron 2 of 30) intron (NM_001101421, intron 2 of 30) 4751 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 146.5-83 chr7 41900828 41901005 + 1.75 NA Intergenic Charlie18a|DNA|hAT-Charlie -197826 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 216-28 chr4 30813907 30814107 + 1.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 93638 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 272.75-11 chr2 184891466 184891716 + 1.75 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 275481 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 353.25-2 chr11 47944221 47944573 + 1.75 NA Intergenic Intergenic -36162 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 173.25-53 chr5 41731820 41731973 + 1.75 NA intron (NR_157114, intron 15 of 15) intron (NR_157114, intron 15 of 15) 111761 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 323.5-2 chr10 19892412 19892713 + 1.75 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 76130 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 240.5-38 chr4 164249822 164249989 + 1.75 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) -52194 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 152-2 chr1 54044618 54044736 + 1.75 NA TTS (NM_001305066) TTS (NM_001305066) 8527 NM_004872 9528 Hs.118947 NM_004872 ENSG00000116209 TMEM59 C1orf8|DCF1|HSPC001|PRO195|UNQ169 transmembrane protein 59 protein-coding 315.5-3 chr18 59792451 59792792 + 1.75 NA Intergenic Intergenic -95198 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 195-18 chr14 86847488 86847623 + 1.75 NA Intergenic MLT1H|LTR|ERVL-MaLR -58223 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 125.5-127 chr8 143241857 143241941 + 1.75 NA Intergenic L1MC4|LINE|L1 -5040 NM_173832 286128 Hs.668016 NM_173832 ENSG00000181638 ZFP41 ZNF753|zfp-41 ZFP41 zinc finger protein protein-coding 285.5-23 chr9 104069516 104069817 + 1.75 NA Intergenic MIR|SINE|MIR 22808 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 158.25-34 chr3 98868916 98869012 + 1.75 NA intron (NM_080927, intron 2 of 15) L1PB3|LINE|L1 32731 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 182.5-65 chr7 47694491 47694690 + 1.75 NA Intergenic Intergenic 39346 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 228.75-14 chr14 77781360 77781508 + 1.75 NA Intergenic L1MC5|LINE|L1 -18675 NR_158988 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 133-54 chr5 166558650 166558797 + 1.75 NA Intergenic L1MEf|LINE|L1 367647 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 233-32 chr8 95697920 95698203 + 1.75 NA intron (NR_038205, intron 2 of 2) L1MEg|LINE|L1 250287 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 285.25-4 chr10 67383733 67383923 + 1.75 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 19582 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 301-3 chr1 239654720 239654955 + 1.75 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 25764 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 364.5-4 chr5 105707910 105708188 + 1.75 NA Intergenic L1MA7|LINE|L1 608575 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 168.5-6 chr1 239092435 239092667 + 1.75 NA Intergenic Intergenic -294017 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 367-4 chr7 12441795 12442068 + 1.75 NA Intergenic Intergenic -37990 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 239.25-7 chr11 61410519 61410753 + 1.75 NA intron (NM_001136040, intron 9 of 9) MIR|SINE|MIR 18049 NM_001173990 51259 Hs.26745 NM_016499 ENSG00000187049 TMEM216 HSPC244 transmembrane protein 216 protein-coding 186.5-25 chr18 1344007 1344130 + 1.75 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 15561 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 312.25-7 chr2 126219311 126219628 + 1.75 NA Intergenic Intergenic -101484 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 190-35 chr3 50844528 50844732 + 1.75 NA intron (NM_004947, intron 3 of 52) intron (NM_004947, intron 3 of 52) 169550 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 331.75-7 chr5 11938839 11939059 + 1.75 NA Intergenic L1MB1|LINE|L1 -34503 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 127.5-32 chr14 45998917 45999078 + 1.75 NA Intergenic Intergenic -65162 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 167.25-10 chr1 200264937 200265094 + 1.75 NA Intergenic Charlie23a|DNA|hAT-Charlie 108777 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 157.5-43 chr2 54661060 54661239 + 1.75 NA 3' UTR (NM_178313, exon 31 of 31) 3' UTR (NM_178313, exon 31 of 31) -63863 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 164.25-46 chr4 75846111 75846242 + 1.75 NA Intergenic Intergenic 56276 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 291.5-15 chr7 19779041 19779261 + 1.75 NA Intergenic L1MEa|LINE|L1 -5534 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 293.75-13 chr5 129636124 129636402 + 1.75 NA intron (NM_133638, intron 10 of 22) L1MEf|LINE|L1 -111831 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 348.5-5 chr3 185224723 185225012 + 1.75 NA intron (NM_001966, intron 4 of 6) MLT1D|LTR|ERVL-MaLR 28405 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 212.5-17 chr16 24825780 24825947 + 1.75 NA 3' UTR (NM_001351850, exon 24 of 24) 3' UTR (NM_001351850, exon 24 of 24) -20000 NM_001258411 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 300.25-3 chr1 239795777 239796188 + 1.75 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -76863 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 375.75-12 chr9 131311256 131311539 + 1.75 NA Intergenic Intergenic 21674 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 253.5-28 chr20 19921484 19921864 + 1.75 NA intron (NM_001242581, intron 2 of 11) LTR16A2|LTR|ERVL 32108 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 322-3 chr14 75378229 75378464 + 1.75 NA Intergenic MSTD-int|LTR|ERVL-MaLR -49378 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 301.75-9 chr3 97774143 97774435 + 1.75 NA intron (NR_136602, intron 2 of 7) HERVL-int|LTR|ERVL 9531 NM_001323514 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 344.5-8 chr8 68841934 68842171 + 1.75 NA Intergenic Intergenic 262138 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 249.25-19 chr5 66660735 66661029 + 1.75 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 64489 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 294.75-13 chr4 91631099 91631435 + 1.75 NA Intergenic L1M2|LINE|L1 646035 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 227.5-4 chr1 80689997 80690251 + 1.75 NA Intergenic FLAM_C|SINE|Alu 48837 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 311.25-6 chr21 28208883 28209301 + 1.75 NA intron (NR_126012, intron 3 of 5) MIR3|SINE|MIR 19575 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 180.25-16 chr14 20466626 20466777 + 1.75 NA Intergenic Intergenic -2678 NM_000270 4860 Hs.75514 NM_000270 ENSG00000198805 PNP NP|PRO1837|PUNP purine nucleoside phosphorylase protein-coding 161.5-43 chr18 37482153 37482288 + 1.75 NA intron (NM_001353724, intron 2 of 12) L2c|LINE|L2 3572 NM_001353756 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 262.25-13 chr2 81141977 81142209 + 1.75 NA Intergenic L1MA4A|LINE|L1 324853 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 285.75-16 chr3 85272270 85272672 + 1.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -113239 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 246.25-21 chr4 70218148 70218362 + 1.75 NA Intergenic L2c|LINE|L2 -7869 NM_152997 260436 Hs.733448 NM_152997 ENSG00000181617 FDCSP C4orf7|FDC-SP follicular dendritic cell secreted protein protein-coding 168.5-55 chr4 36607817 36607944 + 1.75 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 34020 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 276.75-13 chr3 63052755 63053020 + 1.75 NA Intergenic Intergenic -49801 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 167.5-36 chr2 28299063 28299229 + 1.75 NA intron (NM_001261840, intron 11 of 11) intron (NM_001261840, intron 11 of 11) 11313 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 341.75 chr17 53069423 53069763 + 1.75 NA Intergenic MER5B|DNA|hAT-Charlie 84088 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 183.5-65 chr5 75019227 75019384 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 33253 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 186.25-32 chr2 225626431 225626589 + 1.75 NA intron (NM_001371273, intron 5 of 7) L2b|LINE|L2 225624 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 133.75-17 chr12 30510828 30510944 + 1.75 NA Intergenic L1MB7|LINE|L1 166358 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 416.75-4 chr4 83964934 83965323 + 1.75 NA Intergenic LTR18A|LTR|ERVL 334041 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 284.25-16 chr3 120059775 120060038 + 1.75 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 24742 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 228-22 chr2 159429270 159429425 + 1.75 NA intron (NM_001329858, intron 10 of 36) intron (NM_001329858, intron 10 of 36) -142644 NM_152528 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 305.5-15 chr5 155770623 155770850 + 1.75 NA Intergenic Intergenic -556021 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 227.25-22 chr2 107109168 107109341 + 1.75 NA Intergenic L1MCb|LINE|L1 -222145 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 291.25-8 chr17 35256301 35256676 + 1.75 NA intron (NM_144975, intron 1 of 4) L1ME3D|LINE|L1 13416 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 113.25-2 chr1 77212666 77212764 + 1.75 NA intron (NM_005482, intron 1 of 10) L1MA5|LINE|L1 6715 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 306.25-5 chr12 119123399 119123668 + 1.75 NA intron (NM_194286, intron 6 of 12) intron (NM_194286, intron 6 of 12) 52951 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 299-4 chr11 66039262 66039498 + 1.75 NA Intergenic MIRb|SINE|MIR 9781 NM_033036 89792 Hs.208343 NM_033036 ENSG00000175229 GAL3ST3 GAL3ST-3|GAL3ST2 galactose-3-O-sulfotransferase 3 protein-coding 199.75-20 chr2 145050841 145051100 + 1.75 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 383003 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 218-14 chr14 64321305 64321521 + 1.75 NA intron (NM_001291712, intron 2 of 13) L1MB8|LINE|L1 17137 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 172.25-70 chr7 34058365 34058532 + 1.75 NA intron (NM_133468, intron 11 of 15) intron (NM_133468, intron 11 of 15) 152909 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 316.25-2 chr10 128510383 128510649 + 1.75 NA Intergenic Intergenic 224566 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 206-17 chr2 129562316 129562611 + 1.75 NA Intergenic L1MEg|LINE|L1 -288572 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 196.25-21 chr15 40386901 40387014 + 1.75 NA intron (NM_033286, intron 3 of 8) intron (NM_033286, intron 3 of 8) 4236 NM_001142761 90417 Hs.525796 NM_033286 ENSG00000128944 KNSTRN C15orf23|HSD11|SKAP|TRAF4AF1 kinetochore localized astrin (SPAG5) binding protein protein-coding 400.5-4 chr5 89565117 89565384 + 1.75 NA Intergenic Intergenic 451470 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 344.25-5 chr21 29326464 29326720 + 1.75 NA non-coding (NR_027655, exon 3 of 8) non-coding (NR_027655, exon 3 of 8) 21388 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 250.75-13 chr20 57437635 57437870 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -44696 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 441-3 chr3 19867403 19867885 + 1.75 NA Intergenic L2|LINE|L2 66573 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 169.5-31 chr16 11376379 11376714 + 1.75 NA intron (NM_001370704, intron 66 of 66) L1MB3|LINE|L1 31087 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 242.75-13 chr21 28432980 28433244 + 1.75 NA Intergenic Intergenic -106206 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 231.25-12 chr14 61185982 61186210 + 1.75 NA Intergenic Intergenic 95242 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 326.5-9 chr2 205049314 205049517 + 1.75 NA intron (NM_205863, intron 4 of 21) THE1C|LTR|ERVL-MaLR 503940 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 200-2 chr1 112959849 112960037 + 1.75 NA intron (NR_103743, intron 1 of 2) MIRc|SINE|MIR 3528 NR_103743 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 335.75-5 chr6 158946420 158946707 + 1.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 53624 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 327.5-4 chr17 73717585 73717866 + 1.75 NA Intergenic L5|LINE|RTE-X -20129 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 118.5-60 chr2 110208234 110208334 + 1.75 NA Intergenic Intergenic -3271 NM_001128178 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 269.5-30 chr8 107941150 107941413 + 1.75 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 140658 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 275.75-6 chr11 111035322 111035537 + 1.75 NA Intergenic Intergenic 61889 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 244.5-31 chr5 72798927 72799255 + 1.75 NA Intergenic Intergenic -17500 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 169.5-71 chr6 74137589 74137759 + 1.75 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 68223 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 201.25-4 chr10 84048503 84048705 + 1.75 NA Intergenic Intergenic -90905 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 156.5-62 chr5 108923970 108924125 + 1.75 NA promoter-TSS (NM_001308031) promoter-TSS (NM_001308031) -559 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 269.25-2 chr1 236829972 236830261 + 1.75 NA intron (NM_001291940, intron 12 of 31) intron (NM_001291940, intron 12 of 31) 34824 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 293.25-7 chr14 50589842 50590064 + 1.75 NA intron (NM_015915, intron 2 of 13) intron (NM_015915, intron 2 of 13) 29928 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 213.5-26 chr2 81233247 81233448 + 1.75 NA Intergenic Intergenic 233599 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 193.75-3 chr1 112236280 112236610 + 1.75 NA Intergenic Intergenic -159769 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 299.75-9 chr6 167325596 167325890 + 1.75 NA intron (NM_031949, intron 1 of 2) intron (NM_031949, intron 1 of 2) 657 NM_031949 83887 Hs.520554 NM_031949 ENSG00000120440 TTLL2 C6orf104|NYD-TSPG|dJ366N23.3 tubulin tyrosine ligase like 2 protein-coding 251.75-6 chr2 21398676 21398860 + 1.75 NA Intergenic Intergenic 274782 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 203.5-10 chr11 116522011 116522296 + 1.75 NA Intergenic L1M7|LINE|L1 -117269 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 280-13 chr2 31017275 31017446 + 1.75 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 112280 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 252.25-11 chr19 35516874 35517068 + 1.75 NA Intergenic Intergenic -3322 NM_001190348 93099 Hs.417795 NM_033317 ENSG00000161249 DMKN UNQ729|ZD52F10 dermokine protein-coding 149.25-73 chrX 43779572 43779675 + 1.75 NA intron (NM_000898, intron 10 of 14) L2a|LINE|L2 102827 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 450.75-3 chr3 55168984 55169436 + 1.75 NA Intergenic Intergenic -8962 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 366.5-4 chr15 86678430 86678751 + 1.75 NA intron (NM_152336, intron 23 of 24) L1M6|LINE|L1 -254290 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 143-55 chr5 27241128 27241411 + 1.75 NA Intergenic L1PA16|LINE|L1 -202683 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 206-19 chr2 198090340 198090526 + 1.75 NA intron (NM_006226, intron 3 of 5) L1ME4a|LINE|L1 284664 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 334.5-13 chr9 127842383 127842753 + 1.75 NA intron (NM_001114753, intron 2 of 14) AluSc5|SINE|Alu 4599 NM_001278138 2022 Hs.76753 NM_000118 ENSG00000106991 ENG END|HHT1|ORW1 endoglin protein-coding 309.5-3 chr11 46740472 46740668 + 1.75 NA Intergenic Intergenic 12622 NR_049846 100847020 NR_049846 ENSG00000263540 MIR5582 - microRNA 5582 ncRNA 293.25-8 chr2 13143592 13143774 + 1.75 NA Intergenic L1MC5|LINE|L1 -136670 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 192.25 chr1 15507065 15507261 + 1.75 NA intron (NR_102732, intron 3 of 8) intron (NR_102732, intron 3 of 8) 17052 NM_001229 842 Hs.329502 NM_001229 ENSG00000132906 CASP9 APAF-3|APAF3|ICE-LAP6|MCH6|PPP1R56 caspase 9 protein-coding 215-27 chr20 58987588 58987842 + 1.75 NA exon (NM_198976, exon 4 of 15) exon (NM_198976, exon 4 of 15) 6459 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 119.75-68 chr5 41285156 41285310 + 1.75 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -23764 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 282.25-8 chr17 69907561 69907808 + 1.75 NA Intergenic Intergenic -54023 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 451 chr15 61536852 61537389 + 1.75 NA Intergenic Intergenic -192798 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 360.75 chr12 1066140 1066482 + 1.75 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 38563 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 361.75-5 chr3 68687644 68687885 + 1.75 NA Intergenic L1MB4|LINE|L1 187127 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 262.25-15 chr2 184987409 184987653 + 1.75 NA Intergenic MSTC|LTR|ERVL-MaLR 179541 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 231-37 chr7 41253423 41253733 + 1.75 NA Intergenic MER92D|LTR|ERV1 151974 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 342-9 chr7 18801137 18801359 + 1.75 NA intron (NM_058176, intron 16 of 22) L1ME3D|LINE|L1 291978 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 127-76 chr5 28400276 28400368 + 1.75 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -112657 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 230-17 chr22 28587315 28587568 + 1.75 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 92424 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 358.75-3 chr21_GL383578v2_alt 21311 21519 + 1.75 NA NA L1MA6|LINE|L1 NA NA 280-17 chr4 64275835 64276101 + 1.75 NA TTS (NM_001363796) TTS (NM_001363796) 133482 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 279.5-14 chr9 80568154 80568458 + 1.75 NA Intergenic L1MB7|LINE|L1 593283 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 135.25-77 chr5 94160543 94160645 + 1.75 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -48895 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 255.75-15 chr2 240967256 240967422 + 1.75 NA non-coding (NR_033841, exon 1 of 9) non-coding (NR_033841, exon 1 of 9) 112 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 331-12 chr7 24347368 24347617 + 1.75 NA Intergenic L1MEj|LINE|L1 63302 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 246.25-32 chrX 88329080 88329344 + 1.75 NA Intergenic MLT1E2|LTR|ERVL-MaLR -418013 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 225.5-50 chr8 102180830 102181234 + 1.75 NA Intergenic L1MCc|LINE|L1 55600 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 328.25-12 chr5 122721335 122721536 + 1.75 NA intron (NR_109881, intron 4 of 11) intron (NR_109881, intron 4 of 11) 9125 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 276-14 chr20 52209691 52209955 + 1.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger -17838 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 187.5-45 chr2 204649264 204649531 + 1.75 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 103922 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 192.25-14 chr11 108688560 108688778 + 1.75 NA intron (NM_004398, intron 6 of 17) L1ME2z|LINE|L1 23600 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 437.75 chr11 72054778 72055221 + 1.75 NA intron (NR_104476, intron 2 of 24) intron (NR_104476, intron 2 of 24) 17303 NR_036123 100422953 NR_036123 ENSG00000263742 MIR3165 mir-3165 microRNA 3165 ncRNA 159-9 chr11 70220180 70220323 + 1.75 NA Intergenic MIR|SINE|MIR 17088 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 233.25 chr1 80017048 80017337 + 1.75 NA Intergenic Intergenic -518563 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 204.75-11 chr13 58601987 58602195 + 1.75 NA Intergenic Intergenic -368974 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 132.25-55 chr21 29774108 29774324 + 1.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 26041 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 265.25-7 chr11 113731064 113731263 + 1.75 NA Intergenic Intergenic -24790 NM_001288751 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 190-48 chr7 49713670 49713791 + 1.75 NA Intergenic Intergenic -59908 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 239.25-26 chr5 146603937 146604143 + 1.75 NA intron (NM_181678, intron 8 of 10) L2b|LINE|L2 -87927 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 227.5-52 chr7 97431191 97431332 + 1.75 NA Intergenic Intergenic -300825 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 168.75-14 chr16 50167530 50167782 + 1.75 NA intron (NM_001365324, intron 1 of 11) L1MD2|LINE|L1 14175 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 227.5-5 chr1 82637055 82637311 + 1.75 NA Intergenic Intergenic -266000 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 255.5-3 chr1 114815074 114815334 + 1.75 NA Intergenic L2b|LINE|L2 -34519 NM_001102396 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 324.25-6 chr7 114153859 114154222 + 1.75 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 67713 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 147.75-61 chr5 21029428 21029518 + 1.75 NA Intergenic Intergenic -413938 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 187.5-15 chr12 39219676 39219823 + 1.75 NA Intergenic Intergenic 223371 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 126.25-12 chr10 44176615 44176705 + 1.75 NA Intergenic Intergenic -116090 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 247.75-19 chr4 38496099 38496309 + 1.75 NA intron (NR_110951, intron 1 of 7) MER58B|DNA|hAT-Charlie -13563 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 233.25-28 chr5 91391385 91391612 + 1.75 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) -8181 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 336.75-7 chr4 58864445 58864904 + 1.75 NA Intergenic L1M4|LINE|L1 -119608 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 122.5-46 chr2 54236846 54236951 + 1.75 NA intron (NM_138448, intron 3 of 3) L1MEg|LINE|L1 19331 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 295.5-9 chr15 56021139 56021461 + 1.75 NA Intergenic L1PA16|LINE|L1 -27688 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 275.75-16 chr4 20555513 20555836 + 1.75 NA intron (NM_001289135, intron 25 of 35) Charlie2b|DNA|hAT-Charlie 27399 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 373.5-6 chr3 196629279 196629622 + 1.75 NA Intergenic Intergenic 3137 NR_132101 101929769 Hs.518527 NR_132101 ENSG00000232065 LINC01063 - long intergenic non-protein coding RNA 1063 ncRNA 258.25-5 chr15 32982275 32982527 + 1.75 NA intron (NM_001277313, intron 7 of 20) L1ME1|LINE|L1 85773 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 413.25-2 chr3 133257260 133257590 + 1.75 NA promoter-TSS (NR_110812) promoter-TSS (NR_110812) -304 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 370.25-2 chr1 203857421 203857748 + 1.75 NA Intergenic AluSx1|SINE|Alu -4015 NR_130746 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 353.75-3 chr2 134714702 134715053 + 1.75 NA intron (NM_030923, intron 1 of 7) intron (NM_030923, intron 1 of 7) 4123 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 315.5-8 chr2 223457027 223457380 + 1.75 NA Intergenic L2c|LINE|L2 145158 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 355.5-5 chr11 102328637 102329165 + 1.75 NA exon (NM_001165, exon 5 of 9) exon (NM_001165, exon 5 of 9) 11417 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 371.5-4 chr16 9556659 9557235 + 1.75 NA Intergenic Intergenic -101442 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 229.75-26 chr5 164941527 164941683 + 1.75 NA Intergenic Intergenic 471326 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 172.25-59 chr4 95446556 95446678 + 1.75 NA intron (NM_003728, intron 1 of 15) MIRc|SINE|MIR 102356 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 215-44 chr9 92645102 92645292 + 1.75 NA intron (NM_022755, intron 6 of 12) AluJb|SINE|Alu 24934 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 252.75-9 chr16 26887794 26888016 + 1.75 NA Intergenic L1PB4|LINE|L1 -179022 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 317-2 chr11 96228526 96228958 + 1.75 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -112696 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 200.5-53 chr5 55573911 55574093 + 1.75 NA Intergenic AluJb|SINE|Alu -38924 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 314.25-7 chr22 27350173 27350488 + 1.75 NA Intergenic Intergenic 39679 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 215-7 chr11 21743996 21744160 + 1.75 NA Intergenic L3b|LINE|CR1 -449007 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 174.5-7 chr10 34131046 34131329 + 1.75 NA intron (NM_001184789, intron 21 of 22) intron (NM_001184789, intron 21 of 22) -358507 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 205.5-11 chr13 109938698 109938932 + 1.75 NA Intergenic Intergenic -114470 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 196-7 chr10 90620552 90620735 + 1.75 NA Intergenic Intergenic -79838 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 137-23 chr14 71030873 71030972 + 1.75 NA intron (NM_014982, intron 16 of 35) intron (NM_014982, intron 16 of 35) 123463 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 218-9 chr11 114656804 114657221 + 1.75 NA Intergenic AluY|SINE|Alu -21515 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 297.75-10 chr19 10506841 10507161 + 1.75 NA Intergenic AluJo|SINE|Alu -3645 NM_203500 9817 Hs.465870 NM_012289 ENSG00000079999 KEAP1 INrf2|KLHL19 kelch like ECH associated protein 1 protein-coding 159.25-71 chrX 21796548 21796647 + 1.75 NA Intergenic L1MDa|LINE|L1 -38481 NR_045617 23676 Hs.86492 NM_014332 ENSG00000091482 SMPX DFN6|DFNX4 small muscle protein X-linked protein-coding 219.25-12 chr14 80383044 80383229 + 1.75 NA intron (NR_038355, intron 4 of 8) intron (NR_038355, intron 4 of 8) -152079 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 220.25-9 chr10 98693774 98693964 + 1.75 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) 230699 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 268.25-10 chr2 200061356 200061662 + 1.75 NA Intergenic L1PA15|LINE|L1 -106018 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 439.75 chr7 37054630 37055071 + 1.75 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 57054 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 355-2 chr10 27894327 27894560 + 1.75 NA intron (NM_001290021, intron 10 of 13) Kanga1a|DNA|TcMar-Tc2 87428 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 364-6 chr3 183631687 183631940 + 1.75 NA Intergenic L2c|LINE|L2 -3810 NM_001349425 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 226.25-26 chr4 98377352 98377513 + 1.75 NA intron (NM_001100430, intron 4 of 12) intron (NM_001100430, intron 4 of 12) 116048 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 253.25-25 chr5 109152344 109152573 + 1.75 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 173911 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 268.75-23 chr4 64854216 64854503 + 1.75 NA Intergenic Intergenic 150141 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 206.5-11 chr11 99772648 99772789 + 1.75 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 216573 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 274.25-10 chr3 14732503 14732812 + 1.75 NA intron (NM_001184957, intron 12 of 16) MER20|DNA|hAT-Charlie 57516 NM_001184957 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 189.5-55 chr6 70079749 70079916 + 1.75 NA intron (NM_001858, intron 15 of 50) intron (NM_001858, intron 15 of 50) 203365 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 258.75-30 chr8 131228532 131228841 + 1.75 NA Intergenic L1MA4|LINE|L1 -187777 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 234.75-18 chr16 89331358 89331554 + 1.75 NA intron (NR_045839, intron 2 of 9) L1MC5|LINE|L1 10323 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 256-9 chr12 3327187 3327479 + 1.75 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 38789 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 184-19 chr16 71762897 71763015 + 1.75 NA intron (NM_001128, intron 9 of 22) MER21B|LTR|ERVL -4469 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 325.75-7 chr3 65562238 65562450 + 1.75 NA intron (NM_001365904, intron 2 of 24) MER104|DNA|TcMar-Tc2 -331472 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 211-3 chr1 188699348 188699595 + 1.75 NA Intergenic L1MA4A|LINE|L1 1255843 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 230.5-15 chr13 89344327 89344575 + 1.75 NA Intergenic Intergenic -107561 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 330.75 chr10 65866339 65866584 + 1.75 NA Intergenic Intergenic 295036 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 229-26 chr3 45465636 45465779 + 1.75 NA intron (NM_001368263, intron 7 of 20) intron (NM_001368263, intron 7 of 20) 43838 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 212.75-7 chr13 55197242 55197420 + 1.75 NA Intergenic L1PA15-16|LINE|L1 22877 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 348-13 chr7 91981335 91981700 + 1.75 NA intron (NM_147185, intron 3 of 49) MER2|DNA|TcMar-Tigger 40642 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 403 chr1 57964384 57964852 + 1.75 NA intron (NM_021080, intron 1 of 16) L2c|LINE|L2 104037 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 219-16 chr2 123837200 123837451 + 1.75 NA Intergenic Intergenic 187849 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 169.5-36 chr2 12696800 12696990 + 1.75 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -19977 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 294.75-12 chr3 107868124 107868522 + 1.75 NA intron (NR_024276, intron 3 of 7) intron (NR_024276, intron 3 of 7) 9745 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 244.25-14 chr2 26207622 26207862 + 1.75 NA intron (NM_000182, intron 11 of 19) intron (NM_000182, intron 11 of 19) 27026 NM_001191033 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 263.5-17 chr2 212381454 212381646 + 1.75 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 44810 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 225-26 chr4 187398443 187398759 + 1.75 NA intron (NR_038931, intron 1 of 4) MER131|DNA?|DNA? 27953 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 235.5-38 chr4 29337307 29337531 + 1.75 NA Intergenic Intergenic 123127 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 211.75-35 chr6 163710670 163710853 + 1.75 NA Intergenic Intergenic -39277 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 209.25-44 chr7 85832824 85833001 + 1.75 NA Intergenic Intergenic 411790 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 214.25-28 chr3 115502000 115502199 + 1.75 NA Intergenic Intergenic -121411 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 282.75-2 chr1 188803921 188804266 + 1.75 NA Intergenic Intergenic 1360465 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 358.25-6 chr4 75764343 75764729 + 1.75 NA intron (NM_001290049, intron 5 of 25) intron (NM_001290049, intron 5 of 25) 40014 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 191.25-48 chr4 72719898 72720074 + 1.75 NA Intergenic L1ME4a|LINE|L1 -150765 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 200-5 chr1 240638847 240638998 + 1.75 NA Intergenic Intergenic -26767 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 323-6 chr12 131723996 131724281 + 1.75 NA intron (NM_004592, intron 4 of 17) intron (NM_004592, intron 4 of 17) 13048 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 276-12 chr2 143109286 143109475 + 1.75 NA Intergenic MER115|DNA|hAT-Tip100 -20039 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 236.25-20 chr21 16825223 16825376 + 1.75 NA Intergenic HERV16-int|LTR|ERVL 235062 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 255.5-4 chr10 59112240 59112452 + 1.75 NA Intergenic L1ME1|LINE|L1 64118 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 231.5-6 chr10 104795746 104795942 + 1.75 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -129628 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 239.75-12 chr15 78932095 78932361 + 1.75 NA intron (NM_001319137, intron 7 of 12) intron (NM_001319137, intron 7 of 12) 12870 NM_004390 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 242-27 chr3 95657184 95657341 + 1.75 NA intron (NR_077228, intron 4 of 4) Charlie5|DNA|hAT-Charlie 25931 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 187.25-46 chr4 101703837 101703988 + 1.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -86695 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 166.75-20 chr14 70286517 70286649 + 1.75 NA Intergenic Intergenic -38782 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 178.25-17 chr11 113582190 113582366 + 1.75 NA Intergenic MLT2A1|LTR|ERVL -106880 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 261.5-30 chr7 43935048 43935398 + 1.75 NA intron (NM_015983, intron 1 of 6) MIRc|SINE|MIR 8787 NM_015983 51619 Hs.19196 NM_015983 ENSG00000078967 UBE2D4 HBUCE1 ubiquitin conjugating enzyme E2 D4 (putative) protein-coding 150.75-5 chr10 76450677 76450783 + 1.75 NA intron (NM_001305581, intron 6 of 6) L1M6|LINE|L1 -437314 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 251.25-26 chr6 57177773 57177991 + 1.75 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 5556 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 272.75-3 chr1 199930064 199930278 + 1.75 NA Intergenic L1PA5|LINE|L1 -97539 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 271.25-13 chr8 60759709 60759976 + 1.75 NA intron (NM_017780, intron 2 of 37) intron (NM_017780, intron 2 of 37) 18583 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 260.5-11 chr16 66954840 66955037 + 1.75 NA Intergenic L1ME1|LINE|L1 -6328 NM_001185177 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 192-12 chr12 54303629 54303758 + 1.75 NA Intergenic Intergenic -2656 NM_001261461 4778 Hs.75643 NM_006163 ENSG00000123405 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 247.5-38 chr7 114467176 114467432 + 1.75 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 40802 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 204.75-7 chr12 9337790 9338032 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -29553 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 356.25-11 chr8 137781508 137782004 + 1.75 NA Intergenic MIRc|SINE|MIR 301789 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 131.5-58 chr3 86207226 86207368 + 1.75 NA Intergenic Intergenic -274646 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 172.5-56 chr5 9980052 9980232 + 1.75 NA Intergenic Intergenic -76318 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 181-36 chr3 101478628 101478818 + 1.75 NA intron (NM_020654, intron 3 of 23) L1MA4A|LINE|L1 34489 NM_001282803 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 271.25-3 chr12 102034195 102034579 + 1.75 NA intron (NM_016053, intron 5 of 6) intron (NM_016053, intron 5 of 6) 27604 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 196.5-53 chr4 118955443 118955565 + 1.75 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 66650 NM_133477 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 200-22 chr18 25412146 25412351 + 1.75 NA Intergenic L1MC3|LINE|L1 -60082 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 249.5-22 chr4 183578880 183579319 + 1.75 NA Intergenic L1MEc|LINE|L1 73017 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 419-4 chr4 104124374 104125019 + 1.75 NA Intergenic Intergenic -366269 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 348.5 chr1 219186013 219186278 + 1.75 NA intron (NM_001350629, intron 3 of 5) L1MEf|LINE|L1 11176 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 357.5-10 chr3 104661736 104662049 + 1.75 NA Intergenic AluSx|SINE|Alu -704821 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 199.5-55 chr7 90457727 90457965 + 1.75 NA Intergenic L2a|LINE|L2 -11793 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 248-4 chr14 101564302 101564551 + 1.75 NA TTS (NM_001362) TTS (NM_001362) 3075 NM_001362 1735 Hs.49322 NM_001362 ENSG00000197406 DIO3 5DIII|D3|DIOIII|TXDI3 iodothyronine deiodinase 3 protein-coding 194.75-4 chr10 77390000 77390120 + 1.75 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 39188 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 417.75-2 chr2 24700528 24701079 + 1.75 NA intron (NM_001362950, intron 11 of 23) MER5A1|DNA|hAT-Charlie -92312 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 205.75-33 chr5 107817701 107817834 + 1.75 NA Intergenic Zaphod|DNA|hAT-Tip100 -146830 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 238 chr1 34649902 34650155 + 1.75 NA Intergenic AluJb|SINE|Alu 19666 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 126.5-108 chr7 23992360 23992491 + 1.75 NA Intergenic Intergenic 282206 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 300.25-12 chr3 145824890 145825138 + 1.75 NA Intergenic THE1B|LTR|ERVL-MaLR 244171 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 294.75-10 chr2 148369821 148370197 + 1.75 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -274742 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 221.5-54 chr9 103145869 103146004 + 1.75 NA intron (NR_121578, intron 8 of 9) intron (NR_121578, intron 8 of 9) 150603 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 197.25-14 chr11 25403709 25403863 + 1.75 NA Intergenic MER117|DNA|hAT-Charlie -785337 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 294.5-16 chr6 73480065 73480313 + 1.75 NA intron (NM_001123226, intron 6 of 12) intron (NM_001123226, intron 6 of 12) 18452 NM_012123 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 270.5-23 chr5 19319039 19319262 + 1.75 NA Intergenic L2a|LINE|L2 567122 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 190.25-48 chr6 16830689 16830874 + 1.75 NA Intergenic MIR|SINE|MIR -69291 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 298-4 chr11 14672063 14672406 + 1.75 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 28430 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 128-55 chr5 136037703 136037859 + 1.75 NA intron (NM_000358, intron 2 of 16) intron (NM_000358, intron 2 of 16) 8793 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 303.5-10 chr19 38480624 38480871 + 1.75 NA intron (NM_001042723, intron 31 of 104) AluSz6|SINE|Alu 47047 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 231.75-27 chr5 66652899 66653098 + 1.75 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 56605 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 164.5-100 chr9 29287568 29287697 + 1.75 NA Intergenic L1ME3B|LINE|L1 -74031 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 196-31 chr5 21613663 21613777 + 1.75 NA Intergenic Intergenic 154240 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 254.25-24 chr6 144497015 144497283 + 1.75 NA intron (NM_007124, intron 32 of 73) L2c|LINE|L2 91494 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 219.25-26 chr5 39884404 39884563 + 1.75 NA Intergenic L1ME3A|LINE|L1 -167808 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 365.75-2 chr17 74327154 74327412 + 1.75 NA intron (NM_153209, intron 1 of 19) intron (NM_153209, intron 1 of 19) 1057 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 381.5-5 chr8 143915492 143915831 + 1.75 NA 3' UTR (NM_201380, exon 32 of 32) 3' UTR (NM_201380, exon 32 of 32) 23936 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 157.25-39 chr2 150009147 150009265 + 1.75 NA Intergenic Intergenic -150015 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 343.75-12 chr8 137271861 137272103 + 1.75 NA Intergenic L1PREC2|LINE|L1 141606 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 239-28 chr5 109750714 109750960 + 1.75 NA intron (NM_002372, intron 4 of 21) intron (NM_002372, intron 4 of 21) 61471 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 264.25-18 chr8 131701388 131701625 + 1.75 NA Intergenic Intergenic -202587 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 391.5-2 chr13 56097349 56097708 + 1.75 NA Intergenic Intergenic 923074 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 299-15 chr5 3185749 3185957 + 1.75 NA Intergenic Intergenic 8018 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 213.75-54 chr9 101949618 101949803 + 1.75 NA Intergenic L1MDa|LINE|L1 -211130 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 214.25-33 chr4 150106224 150106364 + 1.75 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 27849 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 314.75-2 chr10 73305315 73305646 + 1.75 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 52739 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 357.25-6 chr7 32532322 32532592 + 1.75 NA intron (NM_015060, intron 1 of 15) LTR1D|LTR|ERV1 36968 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 187-13 chr17 28592386 28592569 + 1.75 NA exon (NM_006461, exon 3 of 24) exon (NM_006461, exon 3 of 24) 6548 NM_006461 10615 Hs.514033 NM_006461 ENSG00000076382 SPAG5 DEEPEST|MAP126|hMAP126 sperm associated antigen 5 protein-coding 296.75 chr10 30192919 30193131 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -18827 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 320.25-11 chr5 110062514 110062843 + 1.75 NA Intergenic Intergenic 179496 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 212.75-29 chr6 49561770 49561983 + 1.75 NA TTS (NR_146862) TTS (NR_146862) 11208 NR_146854 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 232-26 chr6 161970423 161970711 + 1.75 NA intron (NM_004562, intron 6 of 11) AluSq2|SINE|Alu 499590 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 269-3 chr10 26382297 26382568 + 1.75 NA Intergenic MLT2A2|LTR|ERVL -55909 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 407.75 chr4 57580211 57580481 + 1.75 NA Intergenic Intergenic 154474 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 260.25-26 chr9 36035464 36035756 + 1.75 NA Intergenic Intergenic -1303 NM_021111 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 247-33 chr8 19235332 19235528 + 1.75 NA intron (NR_038919, intron 2 of 4) L2b|LINE|L2 10092 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 261.5-16 chr22 35495762 35495955 + 1.75 NA Intergenic Intergenic -44636 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 229.75-6 chr10 57325627 57325850 + 1.75 NA Intergenic Intergenic -21179 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 219.25-25 chr5 37707987 37708204 + 1.75 NA intron (NM_001345998, intron 13 of 17) intron (NM_001345998, intron 13 of 17) 126727 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 153.75-14 chr11 76268334 76268439 + 1.75 NA Intergenic Intergenic -61884 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 143.25-70 chr7 97658297 97658423 + 1.75 NA Intergenic Intergenic -73726 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 303.25-14 chr4 178878662 178878872 + 1.75 NA Intergenic Intergenic -970831 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 236.5-43 chr7 7075571 7075788 + 1.75 NA TTS (NR_034022) TTS (NR_034022) -8634 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 227-14 chr2 30441044 30441267 + 1.75 NA Intergenic MER74A|LTR|ERVL -6091 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 231-38 chr7 52959598 52959781 + 1.75 NA Intergenic LTR8|LTR|ERV1 -75944 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 212.25-5 chr1 193848995 193849182 + 1.75 NA Intergenic L2|LINE|L2 544343 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 297.5-15 chrX 47447426 47447646 + 1.75 NA exon (NM_007130, exon 5 of 5) exon (NM_007130, exon 5 of 5) 20133 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 179.75-30 chr20 32775697 32775862 + 1.75 NA intron (NM_175848, intron 1 of 21) intron (NM_175848, intron 1 of 21) -4073 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 185-20 chr2 63610460 63610591 + 1.75 NA Intergenic Intergenic 21374 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 150.5-44 chr2 69179180 69179315 + 1.75 NA intron (NM_032208, intron 14 of 17) intron (NM_032208, intron 14 of 17) 75565 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 311.75 chr1 151504473 151504686 + 1.75 NA Intergenic Intergenic -6808 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 300.75-6 chr18 71332739 71332977 + 1.75 NA Intergenic L1PA16|LINE|L1 246098 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 400-7 chr9 19440129 19440381 + 1.75 NA intron (NM_001010887, intron 4 of 5) L2b|LINE|L2 31246 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 355.5-9 chr3 140245809 140246038 + 1.75 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 262866 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 340 chr10 126054353 126054712 + 1.75 NA intron (NM_001288974, intron 14 of 18) intron (NM_001288974, intron 14 of 18) -81259 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 139.5-2 chr1 87039895 87040012 + 1.75 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -89812 NR_026988 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 448.5-4 chr8 137853365 137853733 + 1.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 229996 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 205.75-20 chr18 68034501 68034759 + 1.75 NA Intergenic L2|LINE|L2 -219808 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 289 chr1 71798299 71798589 + 1.75 NA intron (NR_046218, intron 1 of 2) intron (NR_046218, intron 1 of 2) 38568 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 317-11 chr6 63131841 63132087 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 188013 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 288.75-15 chr4 42196351 42196686 + 1.75 NA Intergenic L4_C_Mam|LINE|RTE-X -43863 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 137.5-10 chr10 56085035 56085161 + 1.75 NA Intergenic Intergenic 276161 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 262-22 chr3 173908755 173908978 + 1.75 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 11930 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 292.25-10 chr8 61773260 61773480 + 1.75 NA Intergenic L2c|LINE|L2 58582 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 219.75-42 chr7 119668493 119668744 + 1.75 NA intron (NR_131960, intron 4 of 4) L1M1|LINE|L1 238757 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 354.25-7 chr8 85171646 85171886 + 1.75 NA TTS (NR_134311) TTS (NR_134311) 5275 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 376.25-2 chr8 87308252 87308784 + 1.75 NA intron (NM_173538, intron 8 of 10) L1MA4|LINE|L1 442103 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 390-4 chr6 50871949 50872417 + 1.75 NA Intergenic Intergenic 53312 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 183.75-57 chr8 92748562 92748735 + 1.75 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 37412 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 134-55 chr4 78015923 78016055 + 1.75 NA Intergenic Intergenic -41334 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 129-63 chr6 40475464 40475577 + 1.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 97183 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 388.75-3 chr6 79689311 79689585 + 1.75 NA intron (NM_031469, intron 2 of 3) intron (NM_031469, intron 2 of 3) 58119 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 248.5-20 chr3 151071216 151071383 + 1.75 NA intron (NR_024066, intron 4 of 5) MIRb|SINE|MIR -15499 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 267-11 chr16 77183023 77183225 + 1.75 NA Intergenic L1ME1|LINE|L1 -8066 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 221.25-5 chr11 105615039 105615283 + 1.75 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 4455 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 289.75-9 chr17 71098526 71098777 + 1.75 NA non-coding (NR_104152, exon 4 of 4) non-coding (NR_104152, exon 4 of 4) 103528 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 245.25-10 chr15 67670019 67670371 + 1.75 NA intron (NM_001206804, intron 13 of 21) L1ME1|LINE|L1 121101 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 251.25-25 chr5 106685797 106685956 + 1.75 NA Intergenic L1MA3|LINE|L1 325138 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 294.25-11 chr6 54588936 54589180 + 1.75 NA Intergenic LTR67B|LTR|ERVL -257713 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 371.25 chr1 90436233 90436588 + 1.75 NA Intergenic Intergenic -221340 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 138.75-17 chr14 64195287 64195403 + 1.75 NA intron (NM_015180, intron 99 of 114) intron (NM_015180, intron 99 of 114) -18799 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 169.5-14 chr11 105501022 105501189 + 1.75 NA Intergenic L1MC|LINE|L1 -108968 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 200.5-18 chr14 61597161 61597359 + 1.75 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -26607 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 162-44 chr5 13719986 13720241 + 1.75 NA intron (NM_001369, intron 71 of 78) A-rich|Low_complexity|Low_complexity 224367 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 324.75-7 chr19 28829037 28829354 + 1.75 NA Intergenic Intergenic -101501 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 289.25-13 chr9 110080149 110080455 + 1.75 NA intron (NM_001004065, intron 1 of 3) intron (NM_001004065, intron 1 of 3) 31704 NM_001004065 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 241-18 chr2 55533739 55533884 + 1.75 NA intron (NM_001282761, intron 5 of 10) intron (NM_001282761, intron 5 of 10) 14216 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 141.25-3 chr1 170653325 170653440 + 1.75 NA Intergenic L1ME3A|LINE|L1 -10749 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 464.25 chr5 75571694 75572147 + 1.75 NA intron (NM_016218, intron 4 of 14) intron (NM_016218, intron 4 of 14) -39556 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 267.5-17 chr21 25290878 25291089 + 1.75 NA Intergenic Intergenic 140718 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 289.75-8 chr16 76328955 76329276 + 1.75 NA intron (NM_001322191, intron 2 of 22) intron (NM_001322191, intron 2 of 22) 19263 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 159-47 chr3 159549938 159550137 + 1.75 NA intron (NM_001197108, intron 1 of 6) L1ME3|LINE|L1 218575 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 173.75-55 chr8 108093933 108094152 + 1.75 NA Intergenic HAL1|LINE|L1 -10422 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 151-16 chr14 38878501 38878678 + 1.75 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -4007 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 224.75-11 chr2 98257344 98257504 + 1.75 NA intron (NM_001345864, intron 15 of 21) L1MA4A|LINE|L1 -88731 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 189-50 chr8 115664461 115664599 + 1.75 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 3483 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 231.5-43 chr7 50751235 50751474 + 1.75 NA intron (NM_001371008, intron 1 of 15) L1ME3|LINE|L1 -19001 NM_001001549 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 226-22 chr4 114136645 114136868 + 1.75 NA Intergenic L1MD2|LINE|L1 -157109 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 178.75-24 chr17 64226460 64226575 + 1.75 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 4217 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 211.25-17 chr2 26146281 26146423 + 1.75 NA Intergenic Intergenic -26736 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 331.25-8 chr5 130351954 130352164 + 1.75 NA Intergenic Intergenic 447594 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 312.75 chr1 101835585 101835895 + 1.75 NA intron (NM_001288821, intron 2 of 5) intron (NM_001288821, intron 2 of 5) 11340 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 237-39 chrX 9387425 9387622 + 1.75 NA Intergenic Intergenic -75772 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1 X-linked protein-coding 164.75-57 chr5 68720903 68721015 + 1.75 NA Intergenic Intergenic 308968 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 280.25-13 chr3 74394722 74394980 + 1.75 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 126289 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 202.5-24 chr22 27533880 27534006 + 1.75 NA Intergenic Intergenic 223292 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 113.75-85 chr4 99277613 99277705 + 1.75 NA intron (NM_000667, intron 8 of 8) L1ME4a|LINE|L1 13326 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 209-43 chr9 134141878 134142330 + 1.75 NA intron (NM_052821, intron 4 of 12) intron (NM_052821, intron 4 of 12) 2312 NM_052821 11091 Hs.397638 NM_017588 ENSG00000196363 WDR5 BIG-3|CFAP89|SWD3 WD repeat domain 5 protein-coding 187.75-2 chr1 99109639 99109841 + 1.75 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -104879 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 463.75-2 chr8 129477676 129478113 + 1.75 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 6248 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 321.75-15 chr5 87951673 87952021 + 1.75 NA Intergenic Intergenic 289805 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 269.5-35 chr9 113228330 113228601 + 1.75 NA intron (NM_001859, intron 1 of 4) intron (NM_001859, intron 1 of 4) 6921 NM_001859 1317 Hs.532315 NM_001859 ENSG00000136868 SLC31A1 COPT1|CTR1 solute carrier family 31 member 1 protein-coding 223-37 chr8 59754800 59755019 + 1.75 NA Intergenic L1MA8|LINE|L1 526491 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 278.5-22 chr4 129643398 129643664 + 1.75 NA Intergenic L1MEg|LINE|L1 127947 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 388.5-9 chr8 122857850 122858226 + 1.75 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 76383 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 253.25-31 chr7 90694352 90694560 + 1.75 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -14942 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 347.75-7 chr5 37306466 37306871 + 1.75 NA intron (NM_001278312, intron 24 of 33) AluSg|SINE|Alu -57240 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 137.25-16 chr11 76344699 76344795 + 1.75 NA Intergenic Intergenic 36218 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 374-4 chr20 10892084 10892472 + 1.75 NA intron (NR_109866, intron 5 of 6) MIR|SINE|MIR 16994 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 207.25-18 chr3 50038229 50038358 + 1.75 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) -50626 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 180.25-21 chr16 52324803 52324989 + 1.75 NA Intergenic Intergenic 66332 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 268.25-24 chr9 85545784 85546010 + 1.75 NA TTS (NM_001330701) TTS (NM_001330701) 196132 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 209.5-7 chr14 33511087 33511289 + 1.75 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -197749 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 292.5-5 chr22 44473476 44473741 + 1.75 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 24625 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 216.75-19 chr17 27976678 27976831 + 1.75 NA intron (NR_146896, intron 2 of 4) intron (NR_146896, intron 2 of 4) 14953 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 252.75-24 chr5 33998076 33998338 + 1.75 NA intron (NR_037951, intron 8 of 8) intron (NR_037951, intron 8 of 8) 9843 NM_203382 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 340.75-5 chr17 35104542 35104765 + 1.75 NA intron (NR_037711, intron 5 of 8) AluSz6|SINE|Alu 15105 NR_037712 5892 Hs.631757 NM_002878 ENSG00000185379 RAD51D BROVCA4|R51H3|RAD51L3|TRAD RAD51 paralog D protein-coding 137.5-119 chr8 111753241 111753340 + 1.75 NA Intergenic L1M4|LINE|L1 376651 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 306-6 chr11 29007084 29007295 + 1.75 NA Intergenic Intergenic -529641 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 205.25-20 chr3 38359990 38360189 + 1.75 NA intron (NR_146068, intron 2 of 16) intron (NR_146068, intron 2 of 16) 13304 NM_001349180 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 197.5-11 chr11 130162747 130162890 + 1.75 NA intron (NM_021978, intron 1 of 18) L2b|LINE|L2 3036 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 286-9 chr11 62758708 62758920 + 1.75 NA Intergenic AluJr|SINE|Alu -2766 NM_002696 5436 Hs.14839 NM_002696 ENSG00000168002 POLR2G RPB19|RPB7|hRPB19|hsRPB7 RNA polymerase II subunit G protein-coding 198-48 chr8 112166279 112166502 + 1.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -477103 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 303.25-15 chr8 93914817 93915090 + 1.75 NA Intergenic Intergenic 1166 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 345.5-11 chr9 87445283 87445529 + 1.75 NA Intergenic Intergenic -51822 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 321.75-5 chr15 74278559 74278778 + 1.75 NA intron (NM_025055, intron 7 of 18) intron (NM_025055, intron 7 of 18) -39891 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 300.5-15 chr3 56632160 56632618 + 1.75 NA intron (NM_001365638, intron 17 of 22) AluSx3|SINE|Alu 31657 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 455-3 chr7 31387389 31387994 + 1.75 NA Intergenic AluSg|SINE|Alu -46965 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 274.5-22 chr4 76109658 76109927 + 1.75 NA intron (NM_001179, intron 10 of 10) intron (NM_001179, intron 10 of 10) 35097 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 205.75-40 chr7 85077251 85077434 + 1.75 NA intron (NM_152754, intron 3 of 16) intron (NM_152754, intron 3 of 16) 44589 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 293-3 chr11 112966879 112967210 + 1.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -3584 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 273.25-19 chrUn_KI270587v1 1252 1509 + 1.75 NA NA ALR/Alpha|Satellite|centr NA NA 186-39 chr4 187180985 187181224 + 1.75 NA Intergenic Intergenic -20882 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 235.5-57 chr8 101601824 101602177 + 1.75 NA intron (NM_024915, intron 8 of 15) L1PA8|LINE|L1 109561 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 173.5-70 chr3 144847126 144847285 + 1.75 NA Intergenic LTR88c|LTR|Gypsy? 874124 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 414-4 chr8 77579666 77580148 + 1.75 NA Intergenic L1MA3|LINE|L1 129210 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 261.5-8 chr14 63492058 63492269 + 1.75 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 16075 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 201-29 chr3 8348483 8348627 + 1.75 NA intron (NR_033378, intron 3 of 3) L1ME1|LINE|L1 153103 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 285-5 chr1 184699200 184699563 + 1.75 NA intron (NM_025191, intron 19 of 19) intron (NM_025191, intron 19 of 19) 55477 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 266-15 chr4 77414110 77414419 + 1.75 NA Intergenic Intergenic -97489 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 253.25 chr1 43675088 43675306 + 1.75 NA intron (NM_014663, intron 11 of 21) intron (NM_014663, intron 11 of 21) 25048 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 170.5-8 chr1 191461645 191461769 + 1.75 NA Intergenic Intergenic -233209 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 184.5-37 chr19 46871083 46871245 + 1.75 NA intron (NM_004491, intron 1 of 6) intron (NM_004491, intron 1 of 6) 10167 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 368.5-6 chr8 130709582 130709918 + 1.75 NA Intergenic Intergenic -266076 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 222.25-14 chr2 17409592 17409780 + 1.75 NA Intergenic AluJb|SINE|Alu 108754 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 271.25-4 chr16 63269484 63269670 + 1.75 NA Intergenic L1M5|LINE|L1 -1233139 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 233.75-38 chr9 85085219 85085491 + 1.75 NA Intergenic LTR85b|LTR|Gypsy? 379454 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 227.75-11 chr2 137067704 137067866 + 1.75 NA intron (NM_001316349, intron 3 of 27) L1MC2|LINE|L1 302240 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 270.25-12 chr4 152329808 152330039 + 1.75 NA intron (NM_018315, intron 6 of 10) intron (NM_018315, intron 6 of 10) -7732 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 314-13 chr5 15152802 15153292 + 1.75 NA Intergenic L1MA4|LINE|L1 113513 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 280-23 chr7 123612191 123612431 + 1.75 NA intron (NM_080928, intron 1 of 9) intron (NM_080928, intron 1 of 9) 3288 NM_080928 142685 Hs.83916 NM_080928 ENSG00000146809 ASB15 - ankyrin repeat and SOCS box containing 15 protein-coding 207-2 chr1 95495681 95495847 + 1.75 NA Intergenic Intergenic -14352 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 171.25-17 chr14 73149027 73149140 + 1.75 NA intron (NM_000021, intron 3 of 11) intron (NM_000021, intron 3 of 11) 12576 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 187.75-11 chr14 47761265 47761428 + 1.75 NA promoter-TSS (NR_037503) promoter-TSS (NR_037503) -242 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 207.5-55 chr7 24864520 24864857 + 1.75 NA intron (NR_104111, intron 6 of 21) MER5B|DNA|hAT-Charlie 27933 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 195-25 chr18 34772290 34772479 + 1.75 NA intron (NM_001198945, intron 4 of 10) intron (NM_001198945, intron 4 of 10) 16408 NM_001391 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 375.75-8 chr20 22129719 22130135 + 1.75 NA Intergenic L1MA9|LINE|L1 75837 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 113-14 chr11 81381499 81381578 + 1.75 NA Intergenic Intergenic 509298 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 279.75-2 chr1 230087379 230087689 + 1.75 NA intron (NM_004481, intron 1 of 15) MER5B|DNA|hAT-Charlie 20296 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 265-23 chr5 162096670 162096938 + 1.75 NA intron (NM_198904, intron 3 of 9) intron (NM_198904, intron 3 of 9) 29162 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 277-12 chr16 79165271 79165472 + 1.75 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 435366 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 302.75 chr14 58341579 58341853 + 1.75 NA intron (NM_002892, intron 11 of 23) intron (NM_002892, intron 11 of 23) 43161 NM_002892 5926 Hs.161000 NM_002892 ENSG00000032219 ARID4A RBBP-1|RBBP1|RBP-1|RBP1 AT-rich interaction domain 4A protein-coding 327.75-7 chr20 39461022 39461297 + 1.75 NA Intergenic LTR79|LTR|ERVL -236411 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 291.25-11 chr19 24340723 24340955 + 1.75 NA Intergenic ALR/Alpha|Satellite|centr -177392 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 297.75 chr1 80069834 80070121 + 1.75 NA Intergenic Intergenic -465778 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 352.75-4 chr19 34947317 34947590 + 1.75 NA Intergenic L1M5|LINE|L1 16776 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 177.75-13 chr13 65154002 65154233 + 1.75 NA Intergenic LTR45C|LTR|ERV1 -711930 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 295.25-2 chr11 23707861 23708097 + 1.75 NA Intergenic L1M1|LINE|L1 -288789 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 291.5-4 chr17 47846079 47846304 + 1.75 NA 3' UTR (NM_001258248, exon 2 of 2) 3' UTR (NM_001258248, exon 2 of 2) -4918 NM_138355 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 184.75-57 chr8 96685980 96686184 + 1.75 NA intron (NM_016134, intron 1 of 7) L1MC4|LINE|L1 40840 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 412-5 chr7 30052814 30053240 + 1.75 NA intron (NM_001363473, intron 7 of 12) intron (NM_001363473, intron 7 of 12) 7942 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 310.75-2 chr11 31070986 31071242 + 1.75 NA intron (NM_001367979, intron 18 of 38) L1ME4a|LINE|L1 -78428 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 225.5-14 chr11 40543884 40544023 + 1.75 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -250823 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 219-28 chr5 3082277 3082464 + 1.75 NA Intergenic Intergenic -95465 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 236.25-32 chr5 146152301 146152451 + 1.75 NA intron (NM_016460, intron 12 of 30) MER1B|DNA|hAT-Charlie 30274 NM_020117 51520 Hs.432674 NM_016460 ENSG00000133706 LARS HSPC192|ILFS1|LARS1|LEURS|LEUS|LFIS|LRS|PIG44|RNTLS|hr025Cl leucyl-tRNA synthetase protein-coding 199-50 chr8 129184690 129184858 + 1.75 NA Intergenic L1MB7|LINE|L1 56466 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 257.5-14 chr19 18712425 18712701 + 1.75 NA intron (NM_015321, intron 1 of 13) L1MB5|LINE|L1 28883 NM_001098482 23373 Hs.371096 NM_015321 ENSG00000105662 CRTC1 MAML2|MECT1|Mam-2|TORC-1|TORC1|WAMTP1 CREB regulated transcription coactivator 1 protein-coding 325.75-12 chrX 50820917 50821269 + 1.75 NA Intergenic L1MA4|LINE|L1 -7049 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 383.5 chr10 41899255 41899883 + 1.75 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 468476 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 136.25-76 chr8 37371996 37372118 + 1.75 NA Intergenic MIR|SINE|MIR 121856 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 286 chr1 56740629 56740878 + 1.75 NA exon (NM_001004303, exon 13 of 20) exon (NM_001004303, exon 13 of 20) 78651 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 316.5-8 chr2 125231879 125232261 + 1.75 NA Intergenic MIRb|SINE|MIR 885915 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 152.25-66 chr8 88033999 88034121 + 1.75 NA 3' UTR (NM_005941, exon 10 of 10) 3' UTR (NM_005941, exon 10 of 10) -160045 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 261.5-13 chr17 68524932 68525149 + 1.75 NA intron (NM_212472, intron 6 of 10) intron (NM_212472, intron 6 of 10) 9646 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 385.75-3 chr8 139655396 139655760 + 1.75 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 47545 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 346-2 chr11 130237325 130237919 + 1.75 NA intron (NR_163265, intron 4 of 7) intron (NR_163265, intron 4 of 7) 77090 NM_001301099 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 252-4 chr12 2156587 2156813 + 1.75 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 66781 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 201.25-37 chr5 164448053 164448183 + 1.75 NA TTS (NR_105064) TTS (NR_105064) 19284 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 176-5 chr10 43866541 43866671 + 1.75 NA intron (NR_038268, intron 2 of 4) intron (NR_038268, intron 2 of 4) 7195 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 240.75-6 chr11 5287462 5287667 + 1.75 NA Intergenic MIR|SINE|MIR 14382 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 179.75-52 chr7 4185652 4185859 + 1.75 NA intron (NM_001079653, intron 9 of 19) L2b|LINE|L2 -50918 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 301-13 chr16 9972393 9972635 + 1.75 NA intron (NM_001134408, intron 2 of 13) L1MEf|LINE|L1 209553 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 295.25-10 chr3 86740240 86740502 + 1.75 NA Intergenic Intergenic 250778 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 308.75-7 chr22 35514685 35514923 + 1.75 NA Intergenic AluJr|SINE|Alu -25690 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 166.5-84 chr5 87293606 87293749 + 1.75 NA intron (NM_022650, intron 1 of 24) L1MC1|LINE|L1 24753 NM_022650 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 283.5-2 chr1 95547219 95547447 + 1.75 NA Intergenic Intergenic 37217 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 212.5-40 chr4 61052308 61052456 + 1.75 NA Intergenic Intergenic -91274 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 164.75-49 chr4 22710317 22710455 + 1.75 NA intron (NR_102356, intron 1 of 2) intron (NR_102356, intron 1 of 2) -3703 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 206.75-27 chr5 131154724 131154874 + 1.75 NA Intergenic AluJb|SINE|Alu 10457 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 128-7 chr10 103023833 103023943 + 1.75 NA intron (NM_199076, intron 1 of 6) intron (NM_199076, intron 1 of 6) -105553 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 209-22 chr4 48826524 48826681 + 1.75 NA Intergenic L1MA7|LINE|L1 -4441 NM_001079840 54940 Hs.518750 NM_017830 ENSG00000109180 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 131.75-31 chr14 78500974 78501087 + 1.75 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 97311 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 273.25-12 chr4 30844906 30845193 + 1.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 124680 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 450.75 chr12 44262453 44262771 + 1.75 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 426531 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 484.5-2 chr3 174007315 174007644 + 1.75 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -86683 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 385.5-2 chr2 74965237 74965626 + 1.75 NA intron (NM_019896, intron 3 of 3) L1ME3B|LINE|L1 6788 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 226.25-9 chr15 65824080 65824296 + 1.75 NA Intergenic MIRb|SINE|MIR -31895 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 231.5-21 chr2 72327289 72327469 + 1.75 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -179517 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 310-12 chr2 182974480 182974984 + 1.75 NA intron (NM_013436, intron 15 of 30) MLT1C|LTR|ERVL-MaLR 63725 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 176.25 chr1 949448 949786 + 1.75 NA intron (NM_015658, intron 12 of 18) intron (NM_015658, intron 12 of 18) 9639 NM_015658 26155 Hs.405987 NM_015658 ENSG00000188976 NOC2L NET15|NET7|NIR|PPP1R112 NOC2 like nucleolar associated transcriptional repressor protein-coding 138.5-101 chr7 157376368 157376495 + 1.75 NA intron (NM_001363676, intron 5 of 6) intron (NM_001363676, intron 5 of 6) 39427 NM_001363676 10049 Hs.490745 NM_005494 ENSG00000105993 DNAJB6 DJ4|DnaJ|HHDJ1|HSJ-2|HSJ2|LGMD1D|LGMD1E|LGMDD1|MRJ|MSJ-1 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 237.25-16 chr20 13462359 13462610 + 1.75 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 176448 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 273-22 chr5 52261646 52261885 + 1.75 NA Intergenic MIR|SINE|MIR 253734 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 473.25 chr18 33026676 33027257 + 1.75 NA intron (NM_001308126, intron 21 of 23) L1MEg|LINE|L1 -253943 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 291.75-13 chr20 18835983 18836221 + 1.75 NA Intergenic Kanga1|DNA|TcMar-Tc2 -5899 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 170.5-30 chr15 53414046 53414261 + 1.75 NA Intergenic Intergenic 126699 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 218.5-53 chr8 115445990 115446188 + 1.75 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 221924 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 185.25-33 chr3 10551708 10551858 + 1.75 NA intron (NM_001353564, intron 1 of 20) intron (NM_001353564, intron 1 of 20) -46197 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 279-5 chr10 19120251 19120494 + 1.75 NA intron (NM_001142308, intron 5 of 39) L2a|LINE|L2 71571 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 233.75-19 chr2 185098376 185098524 + 1.75 NA Intergenic Intergenic 68622 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 285.25-13 chr20 3311463 3311743 + 1.75 NA intron (NM_001009984, intron 20 of 36) L1ME3D|LINE|L1 -72413 NM_001363745 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 309-18 chr6 56439056 56439350 + 1.75 NA Intergenic Intergenic -45075 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 246.25-10 chr19 10636029 10636233 + 1.75 NA intron (NM_001363611, intron 14 of 22) intron (NM_001363611, intron 14 of 22) 10578 NM_020428 57153 Hs.534560 NM_020428 ENSG00000129353 SLC44A2 CTL2|PP1292 solute carrier family 44 member 2 protein-coding 274-9 chr15 41313785 41314056 + 1.75 NA TTS (NR_152821) TTS (NR_152821) 18671 NM_007280 11339 Hs.661645 NM_007280 ENSG00000104147 OIP5 5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta Opa interacting protein 5 protein-coding 218.75-28 chr4 122191961 122192175 + 1.75 NA intron (NM_015312, intron 8 of 83) Charlie1a|DNA|hAT-Charlie 21465 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 285-18 chr5 131946880 131947154 + 1.75 NA Intergenic LTR45B|LTR|ERV1 -1354 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 324.5-14 chr5 174090733 174091012 + 1.75 NA intron (NM_015980, intron 3 of 4) intron (NM_015980, intron 3 of 4) 45166 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 202.5-46 chr6 23207289 23207435 + 1.75 NA Intergenic Intergenic -489438 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 171.75-51 chr6 123636592 123636757 + 1.75 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 276 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 550.75-2 chr8 114431989 114432637 + 1.75 NA Intergenic LTR83|LTR|ERVL -995374 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 127.25-77 chr5 21146380 21146500 + 1.75 NA Intergenic L1MA1|LINE|L1 -313040 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 460-4 chr2 137812958 137813352 + 1.75 NA Intergenic Intergenic 114777 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 246.25-19 chr22 35329360 35329550 + 1.75 NA intron (NR_156428, intron 6 of 13) L1MD3|LINE|L1 -6185 NR_037471 100500826 NR_037471 ENSG00000266320 MIR3909 mir-3909 microRNA 3909 ncRNA 360.75-4 chr2 99587302 99587728 + 1.75 NA intron (NM_001025108, intron 14 of 23) intron (NM_001025108, intron 14 of 23) -97498 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 275.25-5 chr13 60292194 60292391 + 1.75 NA Intergenic Intergenic -24188 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 369-10 chr4 71065728 71066112 + 1.75 NA Intergenic L2c|LINE|L2 72271 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 198.25-43 chr7 28473754 28473906 + 1.75 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 38215 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 295-12 chr5 74568270 74568533 + 1.75 NA Intergenic L1PA16|LINE|L1 -31425 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 240.25-7 chr16 1534673 1534871 + 1.75 NA intron (NM_001256541, intron 2 of 3) intron (NM_001256541, intron 2 of 3) 1106 NM_024600 79652 Hs.459652 NM_024600 ENSG00000131634 TMEM204 C16orf30|CLP24 transmembrane protein 204 protein-coding 158 chr1 7556222 7556359 + 1.75 NA intron (NM_001349608, intron 5 of 21) MER74A|LTR|ERVL -113440 NM_001349620 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 198.5-3 chr10 18782155 18782367 + 1.75 NA Intergenic Intergenic 122830 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 286-22 chr7 41033980 41034192 + 1.75 NA Intergenic Intergenic -54147 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 327.25-9 chr8 117158331 117158608 + 1.75 NA intron (NM_173851, intron 4 of 7) L3|LINE|CR1 23474 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 257.75-24 chr9 13807056 13807293 + 1.75 NA Intergenic Intergenic -120797 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 301.75-10 chr4 58606690 58607055 + 1.75 NA Intergenic Intergenic -70544 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 170-34 chr3 118042622 118042848 + 1.75 NA Intergenic L1MA9|LINE|L1 -351810 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 298.5-6 chr11 95670766 95671119 + 1.75 NA Intergenic L1M4c|LINE|L1 118840 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 314.75-4 chr2 68667010 68667216 + 1.75 NA Intergenic L1PB3|LINE|L1 23525 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 371.5-2 chr1 179870957 179871197 + 1.75 NA intron (NM_001349934, intron 1 of 6) intron (NM_001349934, intron 1 of 6) -2237 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 310-20 chr5 170816515 170816913 + 1.75 NA Intergenic Intergenic 32989 NM_014211 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 205.25-44 chr8 86028480 86028619 + 1.75 NA Intergenic Intergenic 41119 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 283.75-7 chr20 44692528 44692829 + 1.75 NA Intergenic L1MB3|LINE|L1 -20939 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 246.75-33 chr7 112036910 112037201 + 1.75 NA intron (NM_001363540, intron 1 of 52) Tigger5b|DNA|TcMar-Tigger 169344 NM_014705 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 233.25-41 chr9 89583755 89583997 + 1.75 NA Intergenic L1MEc|LINE|L1 -21136 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 315.5-13 chr9 118359971 118360237 + 1.75 NA Intergenic Intergenic -319567 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 177.25-18 chr2 11649688 11649865 + 1.75 NA Intergenic Intergenic 20419 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 223-29 chr3 156646619 156646802 + 1.75 NA Intergenic MIR|SINE|MIR -27880 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 265.25-29 chrX 74564166 74564456 + 1.75 NA Intergenic L1MA2|LINE|L1 50313 NM_183353 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 133-15 chr12 103844130 103844241 + 1.75 NA non-coding (NR_027249, exon 16 of 16) non-coding (NR_027249, exon 16 of 16) -2951 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 312.75-2 chr10 93793336 93793604 + 1.75 NA intron (NM_001308275, intron 7 of 7) MIR|SINE|MIR 35534 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 253.25-27 chr5 118373518 118373731 + 1.75 NA intron (NR_104610, intron 9 of 9) MER94|DNA|hAT-Blackjack 91050 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 316.25-8 chr8 82476294 82476519 + 1.75 NA Intergenic L1MB1|LINE|L1 -435698 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 220.25-26 chr20 44970606 44970764 + 1.75 NA intron (NR_147974, intron 1 of 3) intron (NR_147974, intron 1 of 3) 4173 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 135.75-26 chr13 24148944 24149021 + 1.75 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -11738 NM_001166271 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 467.25 chr19 9386093 9386634 + 1.75 NA Intergenic LTR26|LTR|ERV1 10047 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 240.75-2 chr1 102873274 102873429 + 1.75 NA Intergenic THE1B|LTR|ERVL-MaLR 235145 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 236.75-7 chr14 55637113 55637326 + 1.75 NA exon (NM_001271014, exon 12 of 44) exon (NM_001271014, exon 12 of 44) 57012 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 125.25-65 chr5 75558699 75558821 + 1.75 NA intron (NM_016218, intron 3 of 14) intron (NM_016218, intron 3 of 14) -46779 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 210.5-43 chr3 186789922 186790079 + 1.75 NA TTS (NM_001967) TTS (NM_001967) 2387 NR_002588 619568 Hs.743897 NR_002588 ENSG00000263776 SNORA4 ACA4 small nucleolar RNA, H/ACA box 4 snoRNA 225.5-35 chr4 72321428 72321635 + 1.75 NA intron (NM_014243, intron 6 of 21) intron (NM_014243, intron 6 of 21) 247690 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 228.25 chr1 34911626 34911820 + 1.75 NA intron (NM_001080418, intron 1 of 11) intron (NM_001080418, intron 1 of 11) 17927 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 280.75-10 chr3 127154065 127154370 + 1.75 NA Intergenic (TGTGTG)n|Simple_repeat|Simple_repeat -38914 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 227-32 chr7 134129823 134130054 + 1.75 NA intron (NM_001365700, intron 1 of 15) intron (NM_001365700, intron 1 of 15) 2598 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 209-30 chr6 151882445 151882580 + 1.75 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 73405 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 346-5 chr14 69973010 69973265 + 1.75 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -4996 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 182.5-64 chr6 150803597 150803773 + 1.75 NA intron (NM_001329803, intron 4 of 13) intron (NM_001329803, intron 4 of 13) -61994 NM_001242767 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 284-18 chr5 23882915 23883198 + 1.75 NA Intergenic L1MA9|LINE|L1 -68292 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 281-13 chr3 5355259 5355584 + 1.75 NA Intergenic Intergenic -105166 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 186.75-10 chr13 51480141 51480252 + 1.75 NA Intergenic L2a|LINE|L2 26851 NR_103812 100507398 Hs.594897 NR_103812 ENSG00000236778 INTS6-AS1 - INTS6 antisense RNA 1 ncRNA 223-34 chr4 178914554 178914718 + 1.75 NA Intergenic Intergenic -1006700 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 350.75-6 chr8 110633459 110633819 + 1.75 NA Intergenic THE1C-int|LTR|ERVL-MaLR 393794 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 197.25-40 chr21 15968529 15968711 + 1.75 NA Intergenic Intergenic -101868 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 390.75-3 chr16 84271946 84272329 + 1.75 NA Intergenic Intergenic -22741 NM_001282467 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 400.25-2 chr4 43401981 43402235 + 1.75 NA Intergenic Intergenic 90435 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 231.5-46 chr8 81729378 81729540 + 1.75 NA Intergenic Intergenic -2989 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 175.75-25 chr20 51668918 51669036 + 1.75 NA intron (NM_006045, intron 13 of 27) intron (NM_006045, intron 13 of 27) 99413 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 533.5 chr14 71161300 71161868 + 1.75 NA Intergenic L1MA4|LINE|L1 -158892 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 290-2 chr10 55023166 55023525 + 1.75 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -222054 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 152-55 chr5 126520723 126520941 + 1.75 NA Intergenic Intergenic 55682 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 204.5-20 chr16 64080713 64080885 + 1.75 NA Intergenic Intergenic 1041264 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 298-2 chr1 200998844 200999155 + 1.75 NA intron (NM_001252103, intron 13 of 33) MIRb|SINE|MIR 24715 NM_001252100 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 277-4 chr11 128526427 128526982 + 1.75 NA non-coding (NR_120581, exon 2 of 4) non-coding (NR_120581, exon 2 of 4) 562 NR_120581 101929517 Hs.562320 NR_120581 ENSG00000254588 ETS1-AS1 pancEts-1 ETS1 antisense RNA 1 ncRNA 211.25-25 chr3 10139328 10139542 + 1.75 NA Intergenic Intergenic -2200 NM_000551 7428 Hs.517792 NM_000551 ENSG00000134086 VHL HRCA1|RCA1|VHL1|pVHL von Hippel-Lindau tumor suppressor protein-coding 308-13 chr9 36956544 36956858 + 1.75 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -63170 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 207.25-25 chr5 59743855 59744005 + 1.75 NA intron (NM_001165899, intron 3 of 16) MamRep605|LTR?|LTR? 24918 NM_001197218 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 219.25-33 chr7 111695998 111696141 + 1.75 NA Intergenic Intergenic -112436 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 133.25-13 chr11 14674649 14674810 + 1.75 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 30925 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 325.25-3 chr1 235182574 235183089 + 1.75 NA intron (NR_135074, intron 19 of 24) intron (NR_135074, intron 19 of 24) 7285 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 171.5-17 chr12 43720895 43721018 + 1.75 NA 3' UTR (NM_001098614, exon 9 of 9) 3' UTR (NM_001098614, exon 9 of 9) 37834 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 303.25-13 chr3 129124858 129125195 + 1.75 NA intron (NM_001204890, intron 11 of 12) AluSq2|SINE|Alu -2876 NM_001204883 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 359 chr1 80795835 80796206 + 1.75 NA Intergenic LTR85a|LTR|Gypsy? 154733 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 237.75-4 chr1 216424038 216424343 + 1.75 NA promoter-TSS (NM_007123) promoter-TSS (NM_007123) -742 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 258-12 chr12 12865820 12866151 + 1.75 NA Intergenic AluSc|SINE|Alu -9492 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 217-14 chr20 20797147 20797291 + 1.75 NA Intergenic Intergenic -84575 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 282.25-9 chr2 137520192 137520494 + 1.75 NA intron (NM_001316349, intron 15 of 27) MIRb|SINE|MIR 407589 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 270.5-29 chr9 34916181 34916414 + 1.75 NA Intergenic Intergenic -20533 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 159.25-62 chr7 26702476 26702691 + 1.75 NA intron (NM_003930, intron 9 of 12) intron (NM_003930, intron 9 of 12) 64712 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 227.25 chr1 5475163 5475360 + 1.75 NA Intergenic Intergenic 387480 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 263-19 chr4 94136813 94137107 + 1.75 NA intron (NR_125922, intron 5 of 8) L1M4|LINE|L1 70596 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 270.25-16 chr7 134719697 134719904 + 1.75 NA Intergenic Intergenic -59834 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 176.75-47 chr5 158618941 158619153 + 1.75 NA Intergenic L1PA10|LINE|L1 -209274 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 319.5-2 chr1 113927647 113927942 + 1.75 NA non-coding (NR_110725, exon 3 of 5) non-coding (NR_110725, exon 3 of 5) 1464 NR_110725 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA 455.5 chr21 27161377 27161913 + 1.75 NA Intergenic Intergenic -194557 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 201.5-30 chr2 79406753 79406907 + 1.75 NA Intergenic Intergenic 94014 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 292-10 chr22 41000168 41000454 + 1.75 NA Intergenic L1MC4a|LINE|L1 48933 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 290.5-9 chr12 31793720 31794035 + 1.75 NA Intergenic Intergenic -1579 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 337.25-10 chr6 162045176 162045585 + 1.75 NA intron (NM_013988, intron 2 of 8) intron (NM_013988, intron 2 of 8) 574403 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 325-5 chr19 44902531 44902738 + 1.75 NA intron (NM_006114, intron 9 of 9) intron (NM_006114, intron 9 of 9) -3162 NM_000041 348 Hs.654439 NM_000041 ENSG00000130203 APOE AD2|APO-E|ApoE4|LDLCQ5|LPG apolipoprotein E protein-coding 200.75-21 chr2 122894850 122895034 + 1.75 NA Intergenic L2|LINE|L2 178539 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 310.5-11 chr4 32134128 32134394 + 1.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -111839 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 216.25-33 chr5 167118373 167118615 + 1.75 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 45252 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 267-16 chr3 39016968 39017154 + 1.75 NA intron (NM_001349253, intron 2 of 29) MLT1A0|LTR|ERVL-MaLR 34883 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 223.75-21 chr5 150126174 150126408 + 1.75 NA intron (NM_002609, intron 11 of 22) intron (NM_002609, intron 11 of 22) -12919 NM_005211 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 223.25-12 chr14 67933614 67933832 + 1.75 NA intron (NM_133509, intron 7 of 10) L1M2|LINE|L1 110131 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 212.25-9 chr10 45559537 45559809 + 1.75 NA intron (NM_145021, intron 1 of 6) intron (NM_145021, intron 1 of 6) -24302 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 275.25-2 chr11 112109703 112109897 + 1.75 NA Intergenic Charlie3|DNA|hAT-Charlie 22927 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 134.25-72 chr5 114897130 114897255 + 1.75 NA Intergenic L1M1|LINE|L1 -123779 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 223.5-74 chr7 90474785 90474942 + 1.75 NA intron (NM_001365443, intron 1 of 6) intron (NM_001365443, intron 1 of 6) 5224 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 318.5-15 chr5 144710581 144710885 + 1.75 NA Intergenic Intergenic 505342 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 274.75-9 chr17 67493285 67493573 + 1.75 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -21844 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 176.75-23 chr2 57259670 57259788 + 1.75 NA Intergenic HERVL-int|LTR|ERVL -647922 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 342.75 chr10 56260037 56260347 + 1.75 NA Intergenic Intergenic 101067 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 254.5-4 chr1 158145637 158145803 + 1.75 NA Intergenic MER70-int|LTR|ERVL -5080 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 301.75-4 chr11 68943604 68943879 + 1.75 NA Intergenic MER47A|DNA|TcMar-Tigger 37245 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 238.75-18 chr8 60779827 60780085 + 1.75 NA intron (NM_017780, intron 2 of 37) MIR|SINE|MIR 38697 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 228.5-35 chr8 113022053 113022218 + 1.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 355017 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 291.5-16 chr7 69012503 69012720 + 1.75 NA Intergenic LTR37B|LTR|ERV1 585013 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 258.5-17 chr6 91316758 91317108 + 1.75 NA Intergenic Intergenic -204727 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 227.25-34 chr7 20566266 20566510 + 1.75 NA Intergenic L1MB2|LINE|L1 -49279 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 385.25 chr1 9240001 9240389 + 1.75 NA intron (NM_001282587, intron 1 of 4) intron (NM_001282587, intron 1 of 4) 348 NM_001282587 9563 Hs.463511 NM_004285 ENSG00000049239 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding 216.25-6 chr10 66377340 66377574 + 1.75 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -548579 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 198.25-42 chr7 19663579 19663895 + 1.75 NA Intergenic L1MB5|LINE|L1 41699 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 202.75-33 chr8 109105322 109105480 + 1.75 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 18773 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 438 chr1 88099872 88100409 + 1.75 NA Intergenic Intergenic -584004 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 392.75-4 chr3 85458054 85458485 + 1.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -46790 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 236.5-9 chr11 17158686 17158891 + 1.75 NA intron (NM_001321380, intron 1 of 31) intron (NM_001321380, intron 1 of 31) 49198 NM_002645 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 168.5-31 chr15 88064251 88064375 + 1.75 NA intron (NM_001007156, intron 13 of 15) MLT1C|LTR|ERVL-MaLR -118045 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 194.75-39 chr5 177144070 177144196 + 1.75 NA intron (NM_172349, intron 3 of 23) MIRb|SINE|MIR 9904 NM_001365684 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 254.5-32 chr8 34734043 34734193 + 1.75 NA Intergenic Intergenic -49803 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 220.25-37 chr6 35895788 35895934 + 1.75 NA intron (NR_034069, intron 2 of 15) MER21A|LTR|ERVL 25237 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 282.25-6 chr15 66358272 66358487 + 1.75 NA Intergenic L1ME3Cz|LINE|L1 -1663 NM_001289986 54962 Hs.744308 NM_017858 ENSG00000075131 TIPIN - TIMELESS interacting protein protein-coding 418.25 chr12 127330798 127331195 + 1.75 NA intron (NR_110057, intron 2 of 2) MER41D|LTR|ERV1 9076 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 180.5-16 chr11 57463068 57463209 + 1.75 NA intron (NM_178570, intron 1 of 2) MIRb|SINE|MIR 2610 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 324.75-11 chr6 138683099 138683518 + 1.75 NA Intergenic Intergenic -8360 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 277-7 chr12 67114159 67114457 + 1.75 NA Intergenic Intergenic -18024 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 169.75-23 chr14 66446586 66446922 + 1.75 NA Intergenic Intergenic -39617 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 462-3 chr4 94225619 94226106 + 1.75 NA intron (NR_045644, intron 3 of 24) intron (NR_045644, intron 3 of 24) 17778 NR_045644 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 217.75-36 chr6 161320025 161320203 + 1.75 NA Intergenic Intergenic -46053 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 114.25-68 chr22 24786643 24786804 + 1.75 NA Intergenic Intergenic -12003 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 266.25-21 chr5 59917339 59917827 + 1.75 NA intron (NM_001165899, intron 3 of 16) MIRc|SINE|MIR -23857 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 298.25-10 chr4 46484976 46485349 + 1.75 NA Intergenic Intergenic -95034 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 206.5-6 chr10 105093549 105093705 + 1.75 NA intron (NM_014978, intron 6 of 26) L1ME1|LINE|L1 -427411 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 180-11 chr10 54930547 54930725 + 1.75 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -129345 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 179-34 chr2 120058789 120058912 + 1.75 NA intron (NM_001330307, intron 3 of 16) L1MD2|LINE|L1 45773 NM_020909 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 252.75-30 chr6 161236987 161237235 + 1.75 NA intron (NM_020133, intron 1 of 8) L3|LINE|CR1 36950 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 180-48 chr4 32604388 32604499 + 1.75 NA Intergenic L1M4|LINE|L1 253405 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 266.25-19 chr5 40313328 40313565 + 1.75 NA Intergenic Intergenic 261155 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 247.5-29 chr5 30325547 30325788 + 1.75 NA Intergenic L1MB1|LINE|L1 445107 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 404-4 chr21 31662334 31662657 + 1.75 NA intron (NM_000454, intron 1 of 4) intron (NM_000454, intron 1 of 4) 2873 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 188.25-47 chr5 107880209 107880457 + 1.75 NA intron (NM_001163315, intron 8 of 8) AluJb|SINE|Alu -209396 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 167-62 chr7 87120722 87120885 + 1.75 NA Intergenic Intergenic 31514 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 271.25-10 chr4 39118002 39118285 + 1.75 NA intron (NM_199039, intron 9 of 9) intron (NM_199039, intron 9 of 9) 55911 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 167-34 chr2 165606875 165607063 + 1.75 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 34633 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 310.75-7 chr2 163346434 163346867 + 1.75 NA Intergenic Intergenic 389358 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 139 chr1 55821335 55821423 + 1.75 NA Intergenic Intergenic 123584 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 201.75-7 chr11 38088737 38088888 + 1.75 NA Intergenic Intergenic 150211 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 298-19 chr4 57052777 57053152 + 1.75 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -56798 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 222.25-18 chr2 223877479 223877623 + 1.75 NA 3' UTR (NM_020830, exon 12 of 12) 3' UTR (NM_020830, exon 12 of 12) -39969 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 374.75-3 chr4 70039035 70039441 + 1.75 NA Intergenic L1PA15-16|LINE|L1 10779 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 268-16 chr22 40078465 40078725 + 1.75 NA intron (NM_001024843, intron 1 of 23) AluSz6|SINE|Alu 33778 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 243.75-2 chr1 232658693 232658897 + 1.75 NA Intergenic L3b|LINE|CR1 -59276 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 312.25 chr11 124315524 124315852 + 1.75 NA Intergenic MIRc|SINE|MIR 4509 NM_001002918 283160 Hs.504212 NM_001002918 ENSG00000279116 OR8D2 JCG2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding 205-25 chr2 220428571 220428710 + 1.75 NA Intergenic Intergenic -522075 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 164.75-62 chr6 152266638 152266762 + 1.75 NA intron (NM_182961, intron 100 of 145) intron (NM_182961, intron 100 of 145) -81322 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 431.75-2 chr5 158388838 158389299 + 1.75 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 20705 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 266.25-16 chr3 192470827 192471055 + 1.75 NA intron (NM_004113, intron 2 of 5) L2a|LINE|L2 -44081 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 284.5-3 chr10 11243046 11243242 + 1.75 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 78114 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 139.25-52 chr20 32447132 32447262 + 1.75 NA 3' UTR (NM_080616, exon 8 of 8) 3' UTR (NM_080616, exon 8 of 8) 36293 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 145.5-89 chr7 49712654 49712753 + 1.75 NA Intergenic MIRb|SINE|MIR -60935 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 180-2 chr1 31880814 31881072 + 1.75 NA Intergenic Intergenic 56875 NM_001369859 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 440.5-3 chr22 27225290 27225762 + 1.75 NA promoter-TSS (NM_001350812) promoter-TSS (NM_001350812) -847 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 337-9 chr3 186243567 186243877 + 1.75 NA intron (NM_001346, intron 19 of 24) intron (NM_001346, intron 19 of 24) 118512 NM_001080744 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 201.25-16 chr18 75813561 75813709 + 1.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -101232 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 293.25 chr1 178428540 178428714 + 1.75 NA intron (NM_004841, intron 3 of 15) AluJr4|SINE|Alu -84482 NM_001170724 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 355.25-3 chr12 128507683 128507955 + 1.75 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 213727 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 249.25-9 chr17 58621342 58621484 + 1.75 NA intron (NM_031272, intron 5 of 31) intron (NM_031272, intron 5 of 31) 70642 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 200.5-69 chr9 35134412 35134705 + 1.75 NA Intergenic L2a|LINE|L2 -18696 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 190.5-21 chr12 90868666 90868846 + 1.75 NA Intergenic Intergenic -49267 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 294.75-3 chr10 7643343 7643657 + 1.75 NA intron (NM_001001851, intron 2 of 11) MIRb|SINE|MIR 23466 NM_030569 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 229.25-10 chr2 75673994 75674168 + 1.75 NA intron (NM_001201334, intron 12 of 16) L1ME3A|LINE|L1 27298 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 264.5-12 chr15 85648259 85648468 + 1.75 NA intron (NM_007200, intron 10 of 36) intron (NM_007200, intron 10 of 36) 28413 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 196.25-49 chr4 36655492 36655634 + 1.75 NA Intergenic Intergenic -13663 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 508 chr8 144977033 144977573 + 1.75 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -17562 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 371-4 chr2 89829150 89829667 + 1.75 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -191501 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 232.75-14 chr22 21793055 21793227 + 1.75 NA intron (NM_002745, intron 4 of 8) AluJr|SINE|Alu -57347 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 328.25-6 chr14 73765169 73765481 + 1.75 NA intron (NM_001043318, intron 1 of 11) MIR|SINE|MIR -5022 NM_001367710 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 239-25 chr4 155051607 155051811 + 1.75 NA Intergenic Intergenic -156927 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 387.75 chr14 73083114 73083431 + 1.75 NA intron (NM_021239, intron 4 of 18) intron (NM_021239, intron 4 of 18) 24738 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 228.5-21 chr2 190324187 190324328 + 1.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -4431 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 310.5-10 chr3 23775198 23775497 + 1.75 NA Intergenic LTR16C|LTR|ERVL -30608 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 218.75-24 chr3 100846526 100846687 + 1.75 NA intron (NM_001349332, intron 17 of 35) intron (NM_001349332, intron 17 of 35) 137064 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 262-7 chr10 90987762 90987996 + 1.75 NA intron (NR_131214, intron 4 of 5) intron (NR_131214, intron 4 of 5) 40579 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 242.25-19 chr3 73754183 73754351 + 1.75 NA Intergenic Intergenic -54977 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 286.25-13 chr4 56400582 56400862 + 1.75 NA intron (NR_156493, intron 8 of 10) intron (NR_156493, intron 8 of 10) -13214 NM_001286669 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 184.25-47 chr6 115692523 115692710 + 1.75 NA Intergenic Intergenic -48781 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 208.5-35 chr18 61078225 61078461 + 1.75 NA Intergenic L1MEi|LINE|L1 -255087 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 222.5 chr1 31437680 31437876 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 23965 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 265.25 chr1 42051926 42052364 + 1.75 NA Intergenic Intergenic -16211 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 202.25-20 chr2 79475830 79475957 + 1.75 NA Intergenic Intergenic 24951 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 293.75-2 chr11 10745733 10746044 + 1.75 NA Intergenic Intergenic -5358 NM_014633 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 221.5-21 chr2 139634326 139634536 + 1.75 NA Intergenic Intergenic 737107 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 175.25-10 chr10 125395552 125395804 + 1.75 NA Intergenic L1MEf|LINE|L1 -178693 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 161.25-7 chr1 212282078 212282176 + 1.75 NA intron (NR_125984, intron 1 of 3) intron (NR_125984, intron 1 of 3) 2894 NR_125984 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 226.25-10 chr15 70551970 70552216 + 1.75 NA Intergenic L2c|LINE|L2 34513 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 260-36 chr9 29096699 29096939 + 1.75 NA intron (NM_001354574, intron 1 of 5) Charlie21a|DNA|hAT-Charlie 115480 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 272.75-9 chr2 65934317 65934561 + 1.75 NA Intergenic MIRb|SINE|MIR 423889 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 280.25-15 chr3 182045095 182045313 + 1.75 NA Intergenic Intergenic 92840 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 189-54 chr9 77010353 77010511 + 1.75 NA Intergenic Intergenic -9223 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 321.25-3 chr17 58833598 58833914 + 1.75 NA intron (NM_014906, intron 1 of 6) L1PA16|LINE|L1 77887 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 272.5-18 chr5 155801560 155801845 + 1.75 NA Intergenic (AATAACT)n|Simple_repeat|Simple_repeat -525055 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 161-62 chr7 85790554 85790745 + 1.75 NA Intergenic Intergenic 369527 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 240.25-11 chr2 99646768 99647018 + 1.75 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -156876 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 347.25 chr1 204285133 204285429 + 1.75 NA intron (NM_014935, intron 1 of 22) Tigger19a|DNA|TcMar-Tigger -71293 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 225.25-13 chr2 105289428 105289676 + 1.75 NA intron (NM_001142621, intron 4 of 11) L1ME4b|LINE|L1 40104 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 191.5-14 chr11 91914251 91914400 + 1.75 NA Intergenic L1MB7|LINE|L1 -310709 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 211.5-2 chr10 78884604 78884777 + 1.75 NA Intergenic L1ME1|LINE|L1 182758 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 248-9 chr19 44020272 44020449 + 1.75 NA Intergenic L1M4c|LINE|L1 -4982 NM_013360 7673 Hs.279840 NM_013360 ENSG00000159885 ZNF222 - zinc finger protein 222 protein-coding 235.25-11 chr16 31512642 31512815 + 1.75 NA Intergenic LTR3B_|LTR|ERVK -4337 NM_022744 64755 Hs.9003 NM_022744 ENSG00000140688 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 266.25-20 chr5 58849456 58849763 + 1.75 NA intron (NM_138453, intron 4 of 4) LTR89|LTR|ERVL? 150289 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 369-3 chr14 32925433 32925732 + 1.75 NA Intergenic Intergenic -13297 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 320.5-16 chr6 20442327 20442682 + 1.75 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 38825 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 256.5-9 chr12 30757634 30757794 + 1.75 NA intron (NR_135046, intron 1 of 1) AluSq2|SINE|Alu 2640 NR_135046 645485 Hs.232332 NR_135046 ENSG00000246331 LOC645485 - uncharacterized LOC645485 ncRNA 225.25-23 chr3 100009194 100009358 + 1.75 NA intron (NM_001042459, intron 1 of 4) Helitron2Na_Mam|RC?|Helitron? -44878 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 244.75-2 chr1 157250692 157250858 + 1.75 NA Intergenic Intergenic -112184 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 191.25-35 chr2 152676994 152677136 + 1.75 NA intron (NM_001365601, intron 8 of 24) intron (NM_001365601, intron 8 of 24) 40396 NM_001365601 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 200.75-26 chr2 195136035 195136174 + 1.75 NA Intergenic Intergenic 405509 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 273-6 chr12 7798051 7798366 + 1.75 NA 3' UTR (NM_024865, exon 4 of 4) 3' UTR (NM_024865, exon 4 of 4) 8806 NM_024865 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 236.5-13 chr12 96526179 96526406 + 1.75 NA intron (NM_001306084, intron 8 of 67) intron (NM_001306084, intron 8 of 67) 36715 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 305-23 chr8 129808723 129809155 + 1.75 NA Intergenic Intergenic -22315 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 136.75-101 chr8 23440084 23440227 + 1.75 NA intron (NM_001128930, intron 8 of 12) L1ME4c|LINE|L1 17492 NM_004901 9583 Hs.444389 NM_004901 ENSG00000197217 ENTPD4 LALP70|LAP70|LYSAL1|NTPDase-4|UDPase ectonucleoside triphosphate diphosphohydrolase 4 protein-coding 165-20 chr15 54332678 54332847 + 1.75 NA intron (NM_001329919, intron 14 of 31) intron (NM_001329919, intron 14 of 31) 320114 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 272-18 chr3 176287781 176288064 + 1.75 NA Intergenic Intergenic 43371 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 174.25-32 chr2 37438535 37438841 + 1.75 NA Intergenic L1ME1|LINE|L1 94058 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 203-7 chr11 112805248 112805379 + 1.75 NA Intergenic Intergenic -156107 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 505.5 chr6 73256470 73256832 + 1.75 NA intron (NM_001251874, intron 2 of 4) intron (NM_001251874, intron 2 of 4) 6545 NM_030568 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 300-15 chr3 178042499 178042737 + 1.75 NA Intergenic Intergenic 225753 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 425-3 chr7 53391082 53391364 + 1.75 NA Intergenic L1MB7|LINE|L1 355590 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 476.5 chr11 122455363 122455706 + 1.75 NA Intergenic L1MA4|LINE|L1 -32663 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 246.25-6 chr14 66334887 66335356 + 1.75 NA Intergenic L1PA7|LINE|L1 -151250 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 210.5-13 chr12 67775813 67776035 + 1.75 NA Intergenic Intergenic -46449 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 258-2 chr1 63041200 63041409 + 1.75 NA Intergenic L1MB7|LINE|L1 -28833 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 234.25-15 chr2 26907011 26907233 + 1.75 NA intron (NM_020134, intron 2 of 12) AluSx1|SINE|Alu 58698 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 406.75 chr3 188941791 188942123 + 1.75 NA non-coding (NR_046873, exon 2 of 2) non-coding (NR_046873, exon 2 of 2) 5682 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 179.75-20 chr16 66186149 66186420 + 1.75 NA Intergenic Intergenic -180407 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 347.5-17 chrX 45698942 45699162 + 1.75 NA Intergenic Intergenic -32036 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 369-7 chr2 187262410 187262717 + 1.75 NA Intergenic Intergenic 185689 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 211.75-33 chr6 80024690 80024907 + 1.75 NA intron (NM_001166691, intron 11 of 21) L2|LINE|L2 20149 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 466 chr2 162255446 162255844 + 1.75 NA Intergenic MER33|DNA|hAT-Charlie -12200 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 243.5-21 chr5 68607812 68608014 + 1.75 NA Intergenic L1MEc|LINE|L1 315336 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 177.75-37 chr3 107294292 107294418 + 1.75 NA intron (NR_028302, intron 2 of 3) L1ME1|LINE|L1 53663 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 233.5-42 chr5 41877633 41877871 + 1.75 NA Intergenic L1ME4c|LINE|L1 -7327 NR_157114 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 258.75-11 chr14 60772434 60772803 + 1.75 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 37857 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 136.25-44 chr2 103125558 103125684 + 1.75 NA Intergenic Intergenic -141192 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 297-25 chr8 87841906 87842183 + 1.75 NA Intergenic L1ME3C|LINE|L1 31971 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 150.75-71 chr8 113891849 113892017 + 1.75 NA Intergenic Intergenic -454994 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 244-20 chr4 161698164 161698366 + 1.75 NA intron (NM_001128428, intron 6 of 14) MLT1A0|LTR|ERVL-MaLR -324468 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 189.75-4 chr10 30880475 30880824 + 1.75 NA intron (NM_001143766, intron 5 of 7) L1ME1|LINE|L1 118868 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 340.75-3 chr11 126473581 126473851 + 1.75 NA intron (NM_001301097, intron 4 of 15) intron (NM_001301097, intron 4 of 15) 67629 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 250.5-25 chr5 6816679 6816931 + 1.75 NA intron (NR_146281, intron 1 of 1) L1ME1|LINE|L1 11116 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 127.75-88 chr7 48465889 48465975 + 1.75 NA intron (NM_152701, intron 43 of 61) intron (NM_152701, intron 43 of 61) 294474 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 197.5-14 chr13 24656200 24656431 + 1.75 NA Intergenic Intergenic -24093 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 312.5-10 chr3 107674817 107675161 + 1.75 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 152027 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 377.25-5 chr20 60690708 60691030 + 1.75 NA Intergenic Intergenic 126307 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 190-54 chr9 26419666 26419849 + 1.75 NA Intergenic L3|LINE|CR1 353082 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 314-10 chr2 224555028 224555323 + 1.75 NA intron (NM_001257197, intron 1 of 14) intron (NM_001257197, intron 1 of 14) 14780 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 149-52 chr7 106550602 106550713 + 1.75 NA Intergenic Intergenic 110501 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 195.75-24 chr2 166968098 166968270 + 1.75 NA intron (NM_152381, intron 2 of 10) L3|LINE|CR1 79697 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 264-25 chr6 165497125 165497425 + 1.75 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 164825 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 127.75-79 chr5 147253849 147253993 + 1.75 NA intron (NM_001112724, intron 2 of 12) intron (NM_001112724, intron 2 of 12) 18895 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 250-21 chr4 20487346 20487547 + 1.75 NA intron (NM_001289135, intron 7 of 35) intron (NM_001289135, intron 7 of 35) -40829 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 253.25-22 chr4 90094573 90094754 + 1.75 NA Intergenic Intergenic -32870 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 296.75-8 chr6 95894594 95894840 + 1.75 NA Intergenic L1MC3|LINE|L1 -121257 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 300-21 chr7 80154450 80154658 + 1.75 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 18770 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 198.25-37 chr5 53484036 53484239 + 1.75 NA exon (NM_006350, exon 4 of 6) exon (NM_006350, exon 4 of 6) 3508 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 480.25-2 chr2 68497860 68498353 + 1.75 NA intron (NM_173545, intron 2 of 9) intron (NM_173545, intron 2 of 9) 30521 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 260.75-10 chr2 28080296 28080585 + 1.75 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 84073 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 239.25-10 chr14 81010215 81010427 + 1.75 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 54700 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 271.5-5 chr14 58607925 58608166 + 1.75 NA Intergenic Intergenic -26023 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 192.75-48 chr8 124057284 124057427 + 1.75 NA intron (NM_001039112, intron 22 of 40) L1MEg|LINE|L1 -16573 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 282-11 chr14 45615338 45615582 + 1.75 NA Intergenic MSTD|LTR|ERVL-MaLR 100142 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 325-12 chrX 100231509 100231833 + 1.75 NA Intergenic L1ME4b|LINE|L1 178602 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 156.5-86 chr8 118216762 118216935 + 1.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -105029 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 295.25-18 chr7 2027611 2027877 + 1.75 NA intron (NM_001013837, intron 12 of 18) L1MEg|LINE|L1 61308 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 141-47 chr20 7784474 7784573 + 1.75 NA Intergenic L1MD1|LINE|L1 155935 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 194.75-25 chr2 199810934 199811173 + 1.75 NA 3' UTR (NM_001363886, exon 5 of 5) 3' UTR (NM_001363886, exon 5 of 5) 40120 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 340.5-11 chr7 133000467 133000788 + 1.75 NA intron (NM_001317177, intron 3 of 8) MER33|DNA|hAT-Charlie 34288 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 128.75-69 chr4 52630888 52630982 + 1.75 NA intron (NM_001286768, intron 3 of 9) intron (NM_001286768, intron 3 of 9) 25604 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 259.75-19 chr5 116437065 116437379 + 1.75 NA Intergenic Intergenic -10276 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 271.75-13 chr7 80953661 80953841 + 1.75 NA Intergenic Intergenic -31362 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 130.5-60 chr3 14069607 14069688 + 1.75 NA Intergenic MER57-int|LTR|ERV1 55223 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 236.75-2 chr11 33497358 33497536 + 1.75 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 121339 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 311.75-5 chr15 90732546 90732931 + 1.75 NA intron (NM_001287246, intron 2 of 22) L1MC4a|LINE|L1 15392 NM_001287248 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 183.75-7 chr10 88322650 88322822 + 1.75 NA intron (NM_018363, intron 5 of 6) L1PA17|LINE|L1 260582 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 268.75-29 chr8 128084481 128084649 + 1.75 NA intron (NR_003367, intron 6 of 8) L2a|LINE|L2 35413 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 174.5-53 chr22 47455897 47456096 + 1.75 NA Intergenic Intergenic 31115 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 369.75-8 chr2 236803099 236803357 + 1.75 NA Intergenic Intergenic 233403 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 249.25-16 chr21 21942523 21942758 + 1.75 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 155819 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 244.25-22 chr6 150761672 150761852 + 1.75 NA intron (NM_001329803, intron 2 of 13) intron (NM_001329803, intron 2 of 13) 40663 NM_001329802 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 196.25-46 chr3 188365448 188365625 + 1.75 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 140131 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 306.75-5 chr2 63265290 63265660 + 1.75 NA intron (NR_148704, intron 14 of 18) L1MA7|LINE|L1 -145933 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 398-2 chr20 6517084 6517415 + 1.75 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 90517 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 410.5 chr19 36718783 36719163 + 1.75 NA exon (NM_001300979, exon 6 of 6) exon (NM_001300979, exon 6 of 6) 15292 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 304.5-10 chr21 25978254 25978603 + 1.75 NA intron (NM_001136131, intron 7 of 15) MIRb|SINE|MIR 161962 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 370-6 chr17 65784110 65784449 + 1.75 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 42172 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 242-38 chr8 87233960 87234126 + 1.75 NA intron (NM_173538, intron 5 of 10) Tigger1|DNA|TcMar-Tigger 367628 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 239.5-5 chr12 77248150 77248339 + 1.75 NA Intergenic Intergenic -182675 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 178.25-61 chr8 55142738 55142917 + 1.75 NA intron (NM_052898, intron 1 of 2) L1ME3A|LINE|L1 40799 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 238.25-22 chr4 78070336 78070574 + 1.75 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 12885 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 219.75-33 chr5 105819841 105820167 + 1.75 NA Intergenic Intergenic 720530 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 159-27 chr16 61587205 61587380 + 1.75 NA Intergenic Intergenic 449146 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 206.75-9 chr14 44659175 44659360 + 1.75 NA Intergenic Intergenic 139859 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 158.25-46 chr5 5335440 5335574 + 1.75 NA Intergenic Intergenic -87170 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 204.25-2 chr1 113426903 113427074 + 1.75 NA intron (NM_001142782, intron 1 of 20) (AT)n|Simple_repeat|Simple_repeat 36473 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 235.75-10 chr15 33510626 33510846 + 1.75 NA intron (NM_001243996, intron 3 of 102) intron (NM_001243996, intron 3 of 102) 199769 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 244.25-13 chr17 78922064 78922209 + 1.75 NA intron (NM_003255, intron 1 of 4) MER5B|DNA|hAT-Charlie 3251 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 127.5-17 chr10 66718133 66718225 + 1.75 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -207857 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 230.5-5 chr10 83161097 83161262 + 1.75 NA Intergenic MIRb|SINE|MIR 515910 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 445.5-2 chr7 24877334 24877792 + 1.75 NA intron (NR_104111, intron 1 of 21) L2c|LINE|L2 15058 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 293.75-5 chr2 56588990 56589234 + 1.75 NA Intergenic Intergenic -403342 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 184.75-29 chr2 5620642 5620790 + 1.75 NA Intergenic Intergenic 70402 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 269.5-23 chr6 53253971 53254290 + 1.75 NA Intergenic MER53|DNA|hAT -22863 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 299.75 chr1 220161336 220161546 + 1.75 NA intron (NM_012414, intron 28 of 34) Tigger13a|DNA|TcMar-Tigger 39178 NR_031705 100302234 NR_031705 ENSG00000281696 MIR664A MIR664|MIRN664|hsa-mir-664|hsa-mir-664a|mir-664a microRNA 664a ncRNA 180-8 chr1 93710818 93710990 + 1.75 NA intron (NM_001261408, intron 2 of 13) MLT1F|LTR|ERVL-MaLR -29067 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 228-24 chr20 46902279 46902426 + 1.75 NA intron (NM_172110, intron 1 of 13) MIRb|SINE|MIR 7509 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 231.75-33 chr9 31698461 31698775 + 1.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -317128 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 323 chr1 14500614 14500822 + 1.75 NA Intergenic L1MB7|LINE|L1 -80745 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 304.25-11 chr4 44140574 44140764 + 1.75 NA Intergenic L2a|LINE|L2 123607 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 216.25-12 chr15 83492860 83493262 + 1.75 NA intron (NM_001324185, intron 2 of 9) L1MC5a|LINE|L1 2447 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 392.75-5 chr4 142183884 142184159 + 1.75 NA intron (NM_001331040, intron 15 of 25) intron (NM_001331040, intron 15 of 25) 547438 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 175.5-88 chr9 69707789 69707954 + 1.75 NA Intergenic Intergenic -35500 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 141-78 chr7 124532765 124532871 + 1.75 NA Intergenic Intergenic -180722 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 144.5-33 chr13 32781926 32782107 + 1.75 NA Intergenic Intergenic 129636 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 220-16 chr18 5619651 5619927 + 1.75 NA intron (NM_001281535, intron 1 of 21) intron (NM_001281535, intron 1 of 21) 9202 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 246.75-24 chr5 40591760 40591970 + 1.75 NA Intergenic L1PA15|LINE|L1 -88050 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 309.25 chr1 73995190 73995445 + 1.75 NA Intergenic Intergenic 202859 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 158.75-56 chr5 54805058 54805210 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -60876 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 230-21 chr4 144317479 144317636 + 1.75 NA Intergenic L2|LINE|L2 -176839 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 193.75-37 chr3 94536331 94536525 + 1.75 NA Intergenic Intergenic -401835 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 295.25-5 chr11 125659918 125660244 + 1.75 NA intron (NM_001330427, intron 12 of 12) L1MB7|LINE|L1 20766 NM_020108 56 Hs.169222 NM_001612 ENSG00000134940 ACRV1 D11S4365|SP-10|SPACA2 acrosomal vesicle protein 1 protein-coding 197-15 chr14 75625183 75625324 + 1.75 NA intron (NM_017791, intron 3 of 9) L3|LINE|CR1 19713 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 314.25-5 chr11 91499095 91499330 + 1.75 NA Intergenic L1MD|LINE|L1 -630010 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 251-34 chr9 24855652 24855914 + 1.75 NA Intergenic MER66D|LTR|ERV1 -309886 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 335.25-7 chr16 59712431 59712723 + 1.75 NA Intergenic L1MC5|LINE|L1 42614 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 179.5-82 chr6 103623915 103624096 + 1.75 NA Intergenic Intergenic 1235541 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 241.75-23 chr4 107070534 107070727 + 1.75 NA Intergenic L1MEd|LINE|L1 -34317 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 398.75 chr11 100868391 100868787 + 1.75 NA intron (NM_001367945, intron 6 of 25) intron (NM_001367945, intron 6 of 25) -65685 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 213.5-40 chr5 38407511 38407824 + 1.75 NA intron (NM_182798, intron 3 of 16) intron (NM_182798, intron 3 of 16) 4126 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 363.5 chr10 12868005 12868407 + 1.75 NA Intergenic Intergenic 133507 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 219.75-36 chr6 147306398 147306580 + 1.75 NA intron (NM_139244, intron 9 of 25) intron (NM_139244, intron 9 of 25) -101875 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 145.75-30 chr18 68320672 68320762 + 1.75 NA Intergenic Intergenic 394391 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 228.75-36 chr7 126443232 126443417 + 1.75 NA intron (NM_001371083, intron 11 of 11) intron (NM_001371083, intron 11 of 11) 614860 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 371 chr11 128185503 128185915 + 1.75 NA Intergenic L2a|LINE|L2 -23057 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 313-3 chr11 103994432 103994803 + 1.75 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -42023 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 248.75-18 chr8 136649501 136649685 + 1.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 118795 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 335.75-2 chr13 103432629 103433021 + 1.75 NA Intergenic Intergenic 7625 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 232-10 chr17 49020819 49020974 + 1.75 NA intron (NM_001160423, intron 2 of 12) AluJb|SINE|Alu 23511 NM_001160423 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 237.75-19 chr17 65941588 65942030 + 1.75 NA intron (NM_001353129, intron 18 of 26) AluSx|SINE|Alu -115266 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 338.5-10 chr7 52600315 52600592 + 1.75 NA Intergenic L1MCa|LINE|L1 -435180 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 126.5-88 chr5 42790366 42790451 + 1.75 NA intron (NM_001134848, intron 6 of 8) L1ME1|LINE|L1 21484 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 162.5-70 chr5 74737986 74738149 + 1.75 NA intron (NR_104006, intron 14 of 19) L1ME3D|LINE|L1 29050 NM_170691 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 243.75-11 chr18 31377081 31377351 + 1.75 NA intron (NM_001134453, intron 1 of 14) intron (NM_001134453, intron 1 of 14) 439 NM_001134453 147409 Hs.407618 NM_177986 ENSG00000175065 DSG4 CDGF13|CDHF13|HYPT6|LAH desmoglein 4 protein-coding 222-20 chr2 120493059 120493252 + 1.75 NA Intergenic L1MC5a|LINE|L1 -26806 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 169.75-14 chr12 4626790 4626946 + 1.75 NA exon (NM_006422, exon 5 of 6) exon (NM_006422, exon 5 of 6) 22005 NM_001282285 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 302.75-6 chr3 61310637 61310857 + 1.75 NA Intergenic L1MC4|LINE|L1 -59286 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 305.75-12 chr5 131864629 131864974 + 1.75 NA intron (NM_001303622, intron 9 of 12) L1M2|LINE|L1 -67784 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 225-15 chr2 85132340 85132501 + 1.75 NA promoter-TSS (NM_031283) promoter-TSS (NM_031283) -972 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 399.75-4 chr16 52740228 52740886 + 1.75 NA Intergenic MIRc|SINE|MIR -133582 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 375.75-6 chr15 84628901 84629285 + 1.75 NA Intergenic AluJb|SINE|Alu -2367 NR_003654 54581 Hs.658114 NM_022050 SCAND2P SCAND2 SCAN domain containing 2 pseudogene pseudo 178.25-62 chr8 91442733 91442941 + 1.75 NA Intergenic Intergenic 193518 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 508.5 chr2 122166870 122167199 + 1.75 NA Intergenic Intergenic 411383 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 247-32 chr7 128019974 128020178 + 1.75 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) 11361 NM_022143 64101 Hs.655003 NM_022143 ENSG00000128594 LRRC4 NAG14|NGL-2 leucine rich repeat containing 4 protein-coding 208.25-11 chr19 28728790 28728950 + 1.75 NA Intergenic Intergenic -1176 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 258.75-19 chr20 54331617 54331802 + 1.75 NA Intergenic Intergenic 123622 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 255.75-14 chr2 199650586 199650862 + 1.75 NA intron (NR_110270, intron 6 of 6) L1MA9|LINE|L1 42656 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 202.5-39 chr5 23239364 23239615 + 1.75 NA Intergenic Intergenic -268120 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 241.25-7 chr16 72890723 72890905 + 1.75 NA intron (NM_001164766, intron 2 of 8) MER58A|DNA|hAT-Charlie 157314 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 293-5 chr13 98192611 98192866 + 1.75 NA intron (NM_005766, intron 1 of 26) intron (NM_005766, intron 1 of 26) -15469 NM_178861 140432 Hs.296045 NM_178861 ENSG00000139797 RNF113B RNF161|ZNF183L1|bA10G5.1 ring finger protein 113B protein-coding 283.5-12 chr22 40707552 40707928 + 1.75 NA Intergenic LTR8B|LTR|ERV1 28562 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 151-15 chr13 77630459 77630610 + 1.75 NA intron (NM_003843, intron 27 of 31) L1M4|LINE|L1 -23983 NR_126413 104355296 Hs.667682 NR_126412 ENSG00000224347 SCEL-AS1 - SCEL antisense RNA 1 ncRNA 207.5-34 chr20 54432473 54432615 + 1.75 NA Intergenic MIR|SINE|MIR -43049 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 253.75-6 chr13 108702543 108702811 + 1.75 NA intron (NM_015011, intron 2 of 34) L1M4|LINE|L1 73066 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 204.25-10 chr11 57619003 57619208 + 1.75 NA Intergenic Intergenic 20894 NM_001032295 710 Hs.384598 NM_000062 ENSG00000149131 SERPING1 C1IN|C1INH|C1NH|HAE1|HAE2 serpin family G member 1 protein-coding 258.75-26 chr7 135104161 135104425 + 1.75 NA intron (NM_001305630, intron 2 of 2) L1PREC2|LINE|L1 -43779 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 285.75-18 chr3 183396512 183396772 + 1.75 NA intron (NM_015078, intron 1 of 29) Zaphod|DNA|hAT-Tip100 31627 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 438-5 chr7 49486614 49486941 + 1.75 NA Intergenic Intergenic -286861 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 221.25-6 chr12 13716481 13716628 + 1.75 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 263802 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 157.25-6 chr1 246051964 246052211 + 1.75 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 365325 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 184.25-12 chr14 40067014 40067171 + 1.75 NA Intergenic Intergenic -634592 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 193.75 chr1 25161978 25162260 + 1.75 NA Intergenic L1MC|LINE|L1 70383 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 216-23 chr2 112702379 112702528 + 1.75 NA Intergenic L1MC1|LINE|L1 -19033 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 283 chr1 118494188 118494422 + 1.75 NA Intergenic L1MDa|LINE|L1 -309077 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 176.75-20 chr19 29064675 29064823 + 1.75 NA Intergenic Intergenic 62194 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 231.5-29 chr3 131805777 131805943 + 1.75 NA intron (NM_130808, intron 2 of 15) MLT1G3|LTR|ERVL-MaLR 180071 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 173.5-25 chr14 71527986 71528162 + 1.75 NA intron (NM_001354286, intron 4 of 24) intron (NM_001354286, intron 4 of 24) 40213 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 225-20 chr3 85774694 85774900 + 1.75 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 48315 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 204.25-51 chr7 106787779 106787965 + 1.75 NA Intergenic MIRc|SINE|MIR -77410 NM_001282427 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 196-38 chr6 14288134 14288267 + 1.75 NA Intergenic MLT1H2|LTR|ERVL-MaLR -2746 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 220.5-36 chr5 86100966 86101142 + 1.75 NA Intergenic Intergenic -181390 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 245-29 chr5 30299454 30299724 + 1.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 419029 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 364.75 chr4 176140007 176140331 + 1.75 NA intron (NM_170710, intron 11 of 30) intron (NM_170710, intron 11 of 30) 55416 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 152.75-68 chrX 37864485 37864605 + 1.75 NA Intergenic Intergenic -16974 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 336.75-8 chr5 13130818 13131316 + 1.75 NA Intergenic L1PA8|LINE|L1 -98181 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 200.75-12 chr14 40712136 40712306 + 1.75 NA Intergenic L1PA15|LINE|L1 -242490 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 214-13 chr11 116111089 116111290 + 1.75 NA Intergenic MER77|LTR|ERVL -350989 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 283.75-6 chr2 191589264 191589481 + 1.75 NA Intergenic Intergenic -88700 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 209.5-14 chr2 42483548 42483757 + 1.75 NA intron (NM_172344, intron 1 of 1) intron (NM_172344, intron 1 of 1) 10330 NM_172344 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 257.25-7 chr14 53447650 53447921 + 1.75 NA Intergenic Intergenic 294431 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 364-8 chr5 104794908 104795344 + 1.75 NA Intergenic Intergenic -304348 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 282-16 chr2 179743532 179743767 + 1.75 NA intron (NM_001352815, intron 1 of 8) intron (NM_001352815, intron 1 of 8) 2017 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 310-22 chr6 152341929 152342254 + 1.75 NA intron (NM_182961, intron 74 of 145) intron (NM_182961, intron 74 of 145) -38439 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 199.5 chr1 58143607 58143814 + 1.75 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 106793 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 256.5-32 chr5 62765627 62765932 + 1.75 NA Intergenic Intergenic 186960 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 274-28 chr9 26086508 26086780 + 1.75 NA intron (NM_001004352, intron 1 of 6) AluJb|SINE|Alu 19969 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 420.75 chr21 14524024 14524363 + 1.75 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 22122 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 395.25-3 chr14 74800085 74800371 + 1.75 NA intron (NM_019589, intron 5 of 20) intron (NM_019589, intron 5 of 20) 36912 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 195.25-33 chr4 178056416 178056540 + 1.75 NA Intergenic Intergenic -148542 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 203-42 chr9 31302230 31302361 + 1.75 NA Intergenic L1PA16|LINE|L1 79195 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 180-77 chrY 11294982 11295128 + 1.75 NA Intergenic Intergenic 1126535 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 226.75-22 chr5 35347622 35347846 + 1.75 NA Intergenic Intergenic -117247 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 262.5-35 chr7 31244155 31244374 + 1.75 NA Intergenic Intergenic 96462 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 187.5-27 chr17 66174706 66174952 + 1.75 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 17063 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 181.5-64 chr7 1894080 1894269 + 1.75 NA intron (NM_001013837, intron 18 of 18) intron (NM_001013837, intron 18 of 18) 46397 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 310.75-9 chr4 117698954 117699307 + 1.75 NA Intergenic Intergenic -135271 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 181.75-33 chr5 38310201 38310417 + 1.75 NA intron (NM_152403, intron 1 of 21) MIR|SINE|MIR -19323 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 124.25-20 chr11 110965343 110965448 + 1.75 NA Intergenic Intergenic 131923 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 364-5 chr18 56879984 56880346 + 1.75 NA exon (NM_052834, exon 20 of 27) exon (NM_052834, exon 20 of 27) 191954 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 130-21 chr15 50448146 50448220 + 1.75 NA intron (NM_001128610, intron 3 of 19) intron (NM_001128610, intron 3 of 19) 23778 NM_001128610 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|PITA4|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 263.75-9 chr4 30541700 30541982 + 1.75 NA Intergenic Intergenic -178528 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 365.75-5 chr7 89226765 89227118 + 1.75 NA intron (NM_181646, intron 2 of 3) HAL1|LINE|L1 -431204 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 322.25-9 chr2 79920473 79920711 + 1.75 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -54009 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 251.5-24 chr4 63390489 63390680 + 1.75 NA Intergenic Intergenic 1018866 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 204.5-34 chr2 206448806 206448940 + 1.75 NA intron (NM_003812, intron 2 of 25) MER21B|LTR|ERVL 5341 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 235-6 chr11 46579695 46579848 + 1.75 NA intron (NM_001267782, intron 1 of 19) AluSx|SINE|Alu 7673 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 274.25-6 chr18 6124852 6125040 + 1.75 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -131798 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 124-9 chr10 54417758 54417837 + 1.75 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -68433 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 346-14 chr8 31346787 31347150 + 1.75 NA Intergenic Intergenic -292784 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 225.5-41 chr5 91403435 91403650 + 1.75 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) -20225 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 147-45 chr2 237485371 237485481 + 1.75 NA promoter-TSS (NM_001281474) promoter-TSS (NM_001281474) -984 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 333.5-8 chr2 29466568 29466854 + 1.75 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 8666 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 306.75-6 chr20 61825539 61825875 + 1.75 NA intron (NM_001252339, intron 3 of 14) MIR|SINE|MIR -105959 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 336.5-5 chr3 43388641 43389254 + 1.75 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -36985 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 158.25-64 chr8 79381759 79381858 + 1.75 NA Intergenic Intergenic 49620 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 341.25-3 chr10 110017593 110017908 + 1.75 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -9369 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 230.75-21 chr6 22327681 22327826 + 1.75 NA Intergenic Intergenic -24918 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 280-16 chr22 26823497 26823786 + 1.75 NA Intergenic MER33|DNA|hAT-Charlie -36570 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 340.75-8 chr4 58470274 58470633 + 1.75 NA Intergenic MER53|DNA|hAT 65875 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 211.25-36 chr8 26805400 26805633 + 1.75 NA intron (NM_001322504, intron 1 of 1) MIR|SINE|MIR 60139 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 257.5-7 chr13 58621069 58621286 + 1.75 NA Intergenic MIR|SINE|MIR -388060 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 404.75-3 chr14 20969015 20969340 + 1.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 13690 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 261.75-15 chr2 127388512 127388862 + 1.75 NA Intergenic Intergenic -29733 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 275-14 chr4 108159659 108159890 + 1.75 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 7023 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 134.75-69 chr7 94432561 94432699 + 1.75 NA Intergenic Intergenic 38069 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 203.75-13 chr15 79327439 79327598 + 1.75 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) 16406 NM_007364 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 125-25 chr14 62358665 62358740 + 1.75 NA Intergenic Intergenic -218729 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 312.75-8 chr5 102954333 102954657 + 1.75 NA intron (NR_157231, intron 13 of 14) intron (NR_157231, intron 13 of 14) 88672 NM_138822 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 333.5-7 chr2 22972822 22973241 + 1.75 NA Intergenic L1MA2|LINE|L1 -412148 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 235.75-28 chr8 119749946 119750167 + 1.75 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) -76666 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 143.5-15 chr11 9618298 9618451 + 1.75 NA Intergenic L2a|LINE|L2 43687 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 459-3 chr5 61865751 61866129 + 1.75 NA Intergenic Intergenic -130242 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 238.25-8 chr17 72824709 72824958 + 1.75 NA intron (NM_001352692, intron 6 of 9) MSTA-int|LTR|ERVL-MaLR -184361 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 325.25-4 chr13 105492096 105492330 + 1.75 NA intron (NR_040247, intron 1 of 6) intron (NR_040247, intron 1 of 6) 13468 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 345.25-3 chr2 5979259 5979642 + 1.75 NA non-coding (NR_026832, exon 2 of 2) non-coding (NR_026832, exon 2 of 2) -2528 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 219.25-15 chr2 40040573 40040701 + 1.75 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 123003 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 426-5 chr4 65950402 65950804 + 1.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -280108 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 199.5-49 chr6 148135288 148135458 + 1.75 NA Intergenic Intergenic -136955 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 253.75-19 chr7 98560939 98561128 + 1.75 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -56252 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 270.5-16 chr20 37460745 37461013 + 1.75 NA Intergenic MLT1F1|LTR|ERVL-MaLR 59424 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 208-42 chr9 30321700 30322021 + 1.75 NA Intergenic Intergenic 86594 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 138.75-6 chr1 165404524 165404646 + 1.75 NA intron (NM_001256570, intron 10 of 10) L1ME4c|LINE|L1 20399 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 230.25-31 chr8 31034452 31034823 + 1.75 NA intron (NM_000553, intron 1 of 34) LTR56|LTR|ERV1 -1281 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 180-15 chr11 64677548 64677688 + 1.75 NA intron (NM_015080, intron 6 of 22) intron (NM_015080, intron 6 of 22) -34073 NM_138734 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 286-4 chr1 218407676 218407937 + 1.75 NA intron (NR_138148, intron 2 of 6) intron (NR_138148, intron 2 of 6) -29827 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 265.5-10 chr13 59234105 59234275 + 1.75 NA Intergenic L1MA4A|LINE|L1 -778528 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 302.75-4 chr2 96518204 96518459 + 1.75 NA Intergenic MLT1G|LTR|ERVL-MaLR -10222 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 278-30 chr8 104710212 104710478 + 1.75 NA Intergenic Intergenic -121321 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 132.25-25 chr12 52092475 52092601 + 1.75 NA TTS (NR_120438) TTS (NR_120438) -1031 NR_120440 26628 Hs.524431 NR_120438 ENSG00000257542 OR7E47P OR7E141 olfactory receptor family 7 subfamily E member 47 pseudogene pseudo 211.5-60 chrX 152201245 152201470 + 1.75 NA intron (NM_000808, intron 7 of 9) intron (NM_000808, intron 7 of 9) -62779 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 254-18 chr6 146960074 146960332 + 1.75 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -156379 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 179.5-2 chr1 18612521 18612650 + 1.75 NA Intergenic AluSx1|SINE|Alu -18261 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 300-10 chr15 51999218 51999478 + 1.75 NA Intergenic L1M4|LINE|L1 19747 NR_156732 112543478 NR_156732 MAPK6-DT lncMAPK6 MAPK6 divergent transcript ncRNA 226-33 chr8 35647827 35648007 + 1.75 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 62403 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 193.75-42 chr7 27383233 27383350 + 1.75 NA Intergenic L1ME4b|LINE|L1 -136062 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 189-35 chr22 28460011 28460188 + 1.75 NA TTS (NR_106713) TTS (NR_106713) 230 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 173.75-54 chr8 104798782 104799031 + 1.75 NA Intergenic Intergenic -209882 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 229.25-15 chr20 51340735 51341038 + 1.75 NA Intergenic Intergenic 112091 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 258.25-10 chr2 43668857 43669109 + 1.75 NA intron (NM_172069, intron 2 of 29) intron (NM_172069, intron 2 of 29) 7446 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 364-2 chr11 79313182 79313430 + 1.75 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 88803 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 228.75-33 chr6 133453270 133453598 + 1.75 NA intron (NM_001301013, intron 5 of 19) intron (NM_001301013, intron 5 of 19) 211935 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 257.5-22 chr5 21646650 21646888 + 1.75 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 187289 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 192.25-37 chr8 82527925 82528063 + 1.75 NA Intergenic L1MEc|LINE|L1 -384110 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 130-9 chr11 39185722 39185821 + 1.75 NA Intergenic Intergenic 536913 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 223.5-22 chr12 120497456 120497615 + 1.75 NA intron (NM_001037494, intron 2 of 2) intron (NM_001037494, intron 2 of 2) 1422 NM_003746 8655 Hs.5120 NM_003746 ENSG00000088986 DYNLL1 DLC1|DLC8|DNCL1|DNCLC1|LC8|LC8a|PIN|hdlc1 dynein light chain LC8-type 1 protein-coding 386.75-2 chr5 149352574 149352843 + 1.75 NA 3' UTR (NM_152407, exon 4 of 4) 3' UTR (NM_152407, exon 4 of 4) 4934 NR_132366 106144529 Hs.607162 NR_132366 ENSG00000253618 GRPEL2-AS1 - GRPEL2 antisense RNA 1 ncRNA 298.25-8 chr17 65785261 65785583 + 1.75 NA intron (NM_001353129, intron 21 of 26) L1MB7|LINE|L1 41029 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 159.75-52 chr5 119529457 119529593 + 1.75 NA intron (NM_001199291, intron 21 of 24) intron (NM_001199291, intron 21 of 24) 77028 NM_001292027 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 334.25-4 chr2 139552922 139553227 + 1.75 NA Intergenic L1MA7|LINE|L1 655750 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 257.75-4 chr11 93499888 93500103 + 1.75 NA intron (NM_020179, intron 1 of 2) intron (NM_020179, intron 1 of 2) 43396 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 206.25-25 chr4 74499272 74499399 + 1.75 NA Intergenic L1M2|LINE|L1 54199 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 249.75-22 chr5 84456578 84456726 + 1.75 NA Intergenic L1MA7|LINE|L1 -71772 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 236-9 chr12 39506959 39507137 + 1.75 NA Intergenic AluJr4|SINE|Alu -63928 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 280.25 chr11 68537180 68537456 + 1.75 NA intron (NM_001352348, intron 3 of 24) intron (NM_001352348, intron 3 of 24) 76566 NM_001352372 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 368-5 chr3 159481466 159481860 + 1.75 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 199017 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 236-15 chr16 80808865 80809184 + 1.75 NA Intergenic Intergenic -4426 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 244-22 chr6 165443247 165443483 + 1.75 NA intron (NM_006661, intron 6 of 22) THE1D-int|LTR|ERVL-MaLR -133760 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 333-2 chr10 88867420 88867722 + 1.75 NA Intergenic MIR3|SINE|MIR -12674 NM_020799 57559 Hs.16229 NM_020799 ENSG00000138134 STAMBPL1 ALMalpha|AMSH-FP|AMSH-LP|bA399O19.2 STAM binding protein like 1 protein-coding 216.25-9 chr12 14318158 14318387 + 1.75 NA Intergenic Intergenic -47360 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 180.25-41 chr3 102925731 102925911 + 1.75 NA Intergenic L1MCb|LINE|L1 490806 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 302-5 chr14 68931072 68931287 + 1.75 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 48123 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 307.5-7 chr3 7133897 7134133 + 1.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -239998 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 318-8 chr17 65780779 65781071 + 1.75 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 45526 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 183.5-8 chr1 238727006 238727143 + 1.75 NA Intergenic Intergenic -241057 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 184.5-78 chr8 101941876 101942017 + 1.75 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -42486 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 441.75-2 chr2 225835619 225836161 + 1.75 NA Intergenic Intergenic -306904 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 228.5-4 chr11 34433676 34433897 + 1.75 NA Intergenic Intergenic -5148 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 257.25-5 chr12 107088658 107088980 + 1.75 NA intron (NM_004075, intron 1 of 12) L1MB7|LINE|L1 4730 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 198.5-2 chr1 175827412 175827617 + 1.75 NA Intergenic MamRep4096|DNA|hAT-Tip100 -49829 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 166-37 chr21 31545357 31545498 + 1.75 NA intron (NM_003253, intron 1 of 28) MLT1C|LTR|ERVL-MaLR 13660 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 173.5-28 chr15 44231926 44232071 + 1.75 NA Intergenic Intergenic -36704 NR_104455 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 193-9 chr10 19422192 19422382 + 1.75 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 306263 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 278.5-11 chr14 79099597 79099854 + 1.75 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -100257 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 120-51 chr2 216215401 216215492 + 1.75 NA Intergenic LTR57-int|LTR|ERVL -1443 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 139.75-66 chr7 95653687 95653841 + 1.75 NA Intergenic L1MB7|LINE|L1 -57248 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 161-5 chr1 160035256 160035443 + 1.75 NA Intergenic Intergenic -3359 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 154.25-8 chr10 17708351 17708509 + 1.75 NA intron (NM_001324284, intron 13 of 14) intron (NM_001324284, intron 13 of 14) -43771 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 345.5-10 chr9 86600529 86600778 + 1.75 NA Intergenic Intergenic -246243 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 226.75-30 chr6 163237665 163237794 + 1.75 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -45727 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 241.25-14 chr4 47742857 47743050 + 1.75 NA intron (NM_006587, intron 5 of 21) L1MC3|LINE|L1 -88392 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 148.25-52 chr3 117793597 117793767 + 1.75 NA Intergenic Intergenic -102757 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 263.75-12 chr5 37858525 37858796 + 1.75 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 18222 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 198.5-37 chr4 149168109 149168242 + 1.75 NA intron (NR_125887, intron 2 of 12) intron (NR_125887, intron 2 of 12) 13880 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 208.75 chr1 32303875 32304031 + 1.75 NA intron (NM_004964, intron 2 of 13) intron (NM_004964, intron 2 of 13) 11870 NM_004964 3065 Hs.88556 NM_004964 ENSG00000116478 HDAC1 GON-10|HD1|KDAC1|RPD3|RPD3L1 histone deacetylase 1 protein-coding 300.75-14 chr8 53987440 53987782 + 1.75 NA intron (NM_201437, intron 4 of 8) intron (NM_201437, intron 4 of 8) 34837 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 400.25-3 chr8 71426684 71427148 + 1.75 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -64847 NM_001288574 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 449 chr12 48516763 48517083 + 1.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -8709 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 230.25-20 chr3 115772093 115772307 + 1.75 NA Intergenic Intergenic 132926 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 299.5-7 chr20 42767413 42767622 + 1.75 NA intron (NM_133170, intron 5 of 31) MLT2B4|LTR|ERVL 82034 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 263.5-3 chr10 26380796 26381095 + 1.75 NA Intergenic Intergenic -57396 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 288.5-17 chr6 27789510 27789875 + 1.75 NA Intergenic Intergenic 18239 NM_003519 8340 Hs.137594 NM_003519 ENSG00000185130 HIST1H2BL H2B/c|H2BFC|dJ97D16.4 histone cluster 1 H2B family member l protein-coding 326-9 chr17 60257782 60258197 + 1.75 NA intron (NM_032582, intron 9 of 33) intron (NM_032582, intron 9 of 33) -26344 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 173.5-78 chr4 111286967 111287159 + 1.75 NA Intergenic Intergenic -426416 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 429.25 chr15 80369146 80369531 + 1.75 NA Intergenic LTR8|LTR|ERV1 -27533 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 180.5-2 chr1 192178329 192178476 + 1.75 NA intron (NM_130782, intron 3 of 4) L2c|LINE|L2 19940 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 149-32 chr21 31748758 31748890 + 1.75 NA Intergenic MER58A|DNA|hAT-Charlie -16706 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 411-6 chr4 60838080 60838395 + 1.75 NA Intergenic Intergenic -84382 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 356.25-2 chr10 110071552 110071802 + 1.75 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -63296 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 216-37 chr7 8145802 8145968 + 1.75 NA intron (NM_001350838, intron 6 of 11) Tigger13a|DNA|TcMar-Tigger 116167 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 182.75-41 chr5 16722091 16722203 + 1.75 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -105089 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 247.75-12 chr2 70905876 70906194 + 1.75 NA intron (NM_012476, intron 1 of 2) intron (NM_012476, intron 1 of 2) 5459 NM_012476 25806 Hs.249170 NM_012476 ENSG00000116035 VAX2 DRES93 ventral anterior homeobox 2 protein-coding 169.75-33 chr2 65615990 65616158 + 1.75 NA Intergenic L1ME3G|LINE|L1 -183475 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 233-19 chr2 102797981 102798206 + 1.75 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 36062 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 415-2 chr8 84022006 84022464 + 1.75 NA Intergenic Intergenic -160552 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 298-23 chr8 114457342 114457696 + 1.75 NA Intergenic Intergenic -1020580 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 187-49 chr5 43506331 43506549 + 1.75 NA intron (NM_198566, intron 3 of 12) intron (NM_198566, intron 3 of 12) 8708 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 261.25-10 chr6 34589845 34590064 + 1.75 NA 3' UTR (NM_024294, exon 5 of 5) 3' UTR (NM_024294, exon 5 of 5) -33621 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 240.75-14 chr18 4070492 4070641 + 1.75 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 108213 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 268-29 chr8 103065480 103065763 + 1.75 NA intron (NM_001695, intron 11 of 12) intron (NM_001695, intron 11 of 12) 44538 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 143-64 chr6 123772910 123773051 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL -30866 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 165.25-20 chr18 12502516 12502613 + 1.75 NA intron (NM_020148, intron 6 of 15) L1M5|LINE|L1 69790 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 186.5-8 chr10 21812775 21812983 + 1.75 NA intron (NM_022365, intron 8 of 11) MLT1F|LTR|ERVL-MaLR 190851 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 177.25-54 chr8 140757239 140757370 + 1.75 NA intron (NR_148037, intron 19 of 34) intron (NR_148037, intron 19 of 34) -24651 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 558.25 chr1 60343232 60343781 + 1.75 NA Intergenic Intergenic -269736 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 299.25-4 chr14 98207555 98207796 + 1.75 NA Intergenic Intergenic -229551 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 214.25-22 chr20 45366184 45366379 + 1.75 NA intron (NR_003189, intron 3 of 5) MIR|SINE|MIR 3112 NR_003189 767557 Hs.730643 NR_003189 ENSG00000254806 SYS1-DBNDD2 C20orf169-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) ncRNA 315-16 chr8 104857079 104857419 + 1.75 NA Intergenic L2b|LINE|L2 -268225 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 301.25-13 chr8 123469508 123469835 + 1.75 NA Intergenic Intergenic 52897 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 208.25-34 chr5 90215517 90215668 + 1.75 NA intron (NR_120601, intron 3 of 5) L1MB3|LINE|L1 74479 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 288.75-13 chr21 14347927 14348231 + 1.75 NA Intergenic Intergenic 35067 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 235-5 chr11 1799773 1799973 + 1.75 NA Intergenic Intergenic -34554 NM_001290334 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 208.75-19 chr22 25777410 25777641 + 1.75 NA intron (NM_001318245, intron 7 of 43) intron (NM_001318245, intron 7 of 43) 35337 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 257.75-23 chr8 135295045 135295326 + 1.75 NA intron (NR_120396, intron 3 of 4) intron (NR_120396, intron 3 of 4) 61054 NR_120395 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 192.75-46 chr8 83191352 83191515 + 1.75 NA Intergenic Intergenic -212325 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 477-2 chr14 55006348 55006823 + 1.75 NA intron (NM_007086, intron 7 of 25) L1M5|LINE|L1 20514 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 251.5-28 chr5 145520775 145521032 + 1.75 NA Intergenic Intergenic 314439 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 114.25-36 chr16 76339575 76339672 + 1.75 NA intron (NM_001322191, intron 2 of 22) intron (NM_001322191, intron 2 of 22) 29771 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 162-15 chr17 30892910 30893156 + 1.75 NA intron (NM_024857, intron 20 of 22) intron (NM_024857, intron 20 of 22) 13205 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 185.75-19 chr13 99994574 99994785 + 1.75 NA TTS (NR_047483) TTS (NR_047483) 3230 NR_047483 100861542 Hs.508571 NR_047483 ENSG00000260738 LINC00554 lncZic2 long intergenic non-protein coding RNA 554 ncRNA 315.5-11 chr8 56259256 56259558 + 1.75 NA Intergenic L1MB8|LINE|L1 47618 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 267.25-18 chrX 119130665 119130903 + 1.75 NA intron (NM_020721, intron 2 of 13) intron (NM_020721, intron 2 of 13) 19795 NM_020721 57481 Hs.97594 NM_020721 ENSG00000250423 KIAA1210 - KIAA1210 protein-coding 138.75-8 chr1 244192234 244192364 + 1.75 NA Intergenic Charlie7|DNA|hAT-Charlie 139094 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 282.5-20 chr8 117703593 117703884 + 1.75 NA Intergenic AluSx|SINE|Alu 183025 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 317.25-7 chr12 115734809 115735018 + 1.75 NA Intergenic Charlie4a|DNA|hAT-Charlie 413741 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 172.5-39 chr2 197844992 197845147 + 1.75 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 40476 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 224.25-13 chr14 60202317 60202602 + 1.75 NA Intergenic L1ME4b|LINE|L1 -32595 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 351-13 chrX 77749982 77750247 + 1.75 NA intron (NM_000489, intron 1 of 34) MER44D|DNA|TcMar-Tigger 36102 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 167.75-4 chr1 88365997 88366295 + 1.75 NA Intergenic L1M7|LINE|L1 -317998 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 233.75-15 chr14 72362850 72363129 + 1.75 NA intron (NM_001370288, intron 3 of 16) L2c|LINE|L2 -153831 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 272.25-13 chr21 31139663 31139910 + 1.75 NA intron (NM_001353684, intron 7 of 12) LTR37A|LTR|ERV1 21154 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 330.75-8 chr6 146431516 146431780 + 1.75 NA intron (NM_001278066, intron 8 of 8) intron (NM_001278066, intron 8 of 8) -112185 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 231.5-24 chr2 173176594 173176823 + 1.75 NA intron (NM_133646, intron 3 of 11) L1MB7|LINE|L1 100862 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 205.75-23 chr2 100723815 100724008 + 1.75 NA Intergenic Intergenic -96228 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 329.5-7 chr21 29692857 29693196 + 1.75 NA intron (NM_001320618, intron 1 of 13) intron (NM_001320618, intron 1 of 13) -55149 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 230.25-5 chr14 67143556 67143717 + 1.75 NA intron (NM_001024218, intron 17 of 21) intron (NM_001024218, intron 17 of 21) -45804 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 308-14 chr9 87306305 87306596 + 1.75 NA Intergenic Intergenic 157806 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 284.25-4 chr14 41430066 41430364 + 1.75 NA Intergenic MER50|LTR|ERV1 -176641 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 281-18 chr4 64243788 64244048 + 1.75 NA Intergenic Intergenic 165532 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 249.75-13 chr2 67851425 67851651 + 1.75 NA Intergenic MIRb|SINE|MIR -25976 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 194.75-55 chr9 79710348 79710507 + 1.75 NA intron (NM_001351563, intron 12 of 17) intron (NM_001351563, intron 12 of 17) -114103 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 365.75 chr15 68961026 68961397 + 1.75 NA intron (NM_001184780, intron 1 of 15) L1PB2|LINE|L1 30686 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 145.5-38 chr18 5635248 5635373 + 1.75 NA Intergenic L1MC4|LINE|L1 -6319 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 148-9 chr10 100010666 100010830 + 1.75 NA promoter-TSS (NM_015221) promoter-TSS (NM_015221) -801 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 163.75-29 chr19 22086885 22087013 + 1.75 NA intron (NM_033468, intron 3 of 3) intron (NM_033468, intron 3 of 3) 34465 NM_033468 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 143.5-98 chr8 57935284 57935415 + 1.75 NA Intergenic Intergenic -43009 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 136.75-90 chr7 29980757 29980896 + 1.75 NA intron (NM_001145514, intron 1 of 7) (ATATAT)n|Simple_repeat|Simple_repeat 8975 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 190-21 chr18 80249434 80249625 + 1.75 NA Intergenic Intergenic -2015 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 264.75-4 chr10 112600631 112600791 + 1.75 NA intron (NM_001365712, intron 6 of 8) L2a|LINE|L2 -33459 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 270.75-16 chr3 171254725 171254950 + 1.75 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -148078 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 218-21 chr2 105732106 105732333 + 1.75 NA Intergenic Intergenic -12693 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 349.75-3 chr2 210459741 210460118 + 1.75 NA intron (NM_001136574, intron 3 of 9) intron (NM_001136574, intron 3 of 9) 16776 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 292-17 chr9 112789657 112789945 + 1.75 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 39041 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 337.25-5 chr3 3272101 3272482 + 1.75 NA Intergenic Intergenic -92574 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 447.5-4 chr8 123753464 123753840 + 1.75 NA Intergenic Intergenic -14787 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 194.75-51 chr8 138266713 138266984 + 1.75 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -183303 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 157-40 chr3 103172563 103172857 + 1.75 NA Intergenic Intergenic 351406 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 250-23 chr4 124048790 124049038 + 1.75 NA Intergenic MSTB2|LTR|ERVL-MaLR 274650 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 160-39 chr6 132278680 132278857 + 1.75 NA Intergenic Intergenic 122707 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 379-10 chr8 134046416 134046764 + 1.75 NA Intergenic MIRb|SINE|MIR 160094 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 218-43 chr7 44184273 44184448 + 1.75 NA intron (NM_001354800, intron 1 of 10) intron (NM_001354800, intron 1 of 10) 5079 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 283.75-2 chr15 45723099 45723293 + 1.75 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 18001 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 269.25-7 chr17 54194649 54194902 + 1.75 NA Intergenic Intergenic 371848 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 203.25-53 chr8 84654608 84654814 + 1.75 NA intron (NM_001354308, intron 3 of 9) L1MA3|LINE|L1 -51216 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 303.75-2 chr16 5574505 5574731 + 1.75 NA Intergenic AluSx1|SINE|Alu 41632 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 201.5-27 chr19 35416083 35416323 + 1.75 NA intron (NR_040046, intron 4 of 4) L1ME3Cz|LINE|L1 10596 NR_040046 100128682 Hs.570008 NR_040046 ENSG00000205786 LINC01531 - long intergenic non-protein coding RNA 1531 ncRNA 308.25-8 chr6 104768073 104768259 + 1.75 NA intron (NR_146792, intron 20 of 24) intron (NR_146792, intron 20 of 24) 91380 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 300-6 chr11 9067489 9067701 + 1.75 NA intron (NM_001367977, intron 5 of 22) L1ME4c|LINE|L1 22784 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 228.25-39 chr8 88424220 88424524 + 1.75 NA Intergenic Intergenic -96889 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 315.25-7 chr2 54070375 54070558 + 1.75 NA intron (NM_001320587, intron 3 of 5) intron (NM_001320587, intron 3 of 5) -45149 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 264.75-6 chr13 102102859 102103057 + 1.75 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -56954 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 219.5-11 chr12 29751046 29751293 + 1.75 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 32773 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 126.25-38 chr2 13162296 13162467 + 1.75 NA Intergenic Intergenic -155368 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 232.75-28 chr9 90100582 90100747 + 1.75 NA Intergenic MER58B|DNA|hAT-Charlie -59165 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 177-30 chr2 205178533 205178800 + 1.75 NA intron (NM_205863, intron 13 of 21) intron (NM_205863, intron 13 of 21) -503834 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 206-31 chr5 148292502 148292798 + 1.75 NA intron (NR_105057, intron 3 of 4) intron (NR_105057, intron 3 of 4) -19773 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 235.5-33 chr3 114169438 114169680 + 1.75 NA intron (NM_000796, intron 2 of 6) intron (NM_000796, intron 2 of 6) 9217 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 198.5-14 chr14 66449162 66449371 + 1.75 NA Intergenic Intergenic -37105 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 190-5 chr10 116307052 116307202 + 1.75 NA Intergenic Intergenic -17321 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 404.75-2 chr10 123677449 123677758 + 1.75 NA intron (NM_153442, intron 2 of 2) intron (NM_153442, intron 2 of 2) 11248 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 227.5-58 chr8 135402790 135403024 + 1.75 NA Intergenic L2b|LINE|L2 -54549 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 476.25-2 chr14 61677104 61677705 + 1.75 NA Intergenic MER106B|DNA|hAT-Charlie -18109 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 123.5-89 chr5 83723887 83723970 + 1.75 NA Intergenic Intergenic -3073 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 624 chr10 99040284 99040863 + 1.75 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -116005 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 335-2 chr11 98905300 98905628 + 1.75 NA Intergenic Intergenic -115485 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 207.25-4 chr1 220014275 220014502 + 1.75 NA intron (NM_004446, intron 12 of 31) HAL1|LINE|L1 32117 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 197.5-27 chr17 62347416 62347674 + 1.75 NA Intergenic L1PB1|LINE|L1 -22673 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 244.75-13 chr18 77296291 77296693 + 1.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 46644 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 185-8 chr11 112886063 112886277 + 1.75 NA Intergenic L2a|LINE|L2 -75250 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 182.5-23 chr17 58880754 58880919 + 1.75 NA intron (NM_014906, intron 1 of 6) AluJb|SINE|Alu 124967 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 285.75-8 chr15 42727194 42727523 + 1.75 NA intron (NM_138477, intron 23 of 27) intron (NM_138477, intron 23 of 27) 9770 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 263.5-11 chr16 55395037 55395230 + 1.75 NA Intergenic MIRc|SINE|MIR 67164 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 249.75-4 chr10 33959614 33959772 + 1.75 NA Intergenic Intergenic -187013 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 190.75-37 chr4 66941860 66942040 + 1.75 NA Intergenic L2|LINE|L2 480050 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 303.25-10 chr2 212837209 212837634 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 42090 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 131.5-92 chr8 104650297 104650409 + 1.75 NA Intergenic MER63D|DNA|hAT-Blackjack -61329 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 181.25-16 chr15 25034970 25035098 + 1.75 NA non-coding (NR_146168, exon 1 of 1) non-coding (NR_146168, exon 1 of 1) 3161 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 178.5 chr1 18947495 18947660 + 1.75 NA intron (NM_001136265, intron 1 of 8) intron (NM_001136265, intron 1 of 8) 9099 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 175.25-19 chr14 76991824 76991955 + 1.75 NA Intergenic AluSq2|SINE|Alu 32251 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 311.5-8 chr4 40074352 40074624 + 1.75 NA intron (NM_001318359, intron 2 of 18) AluJo|SINE|Alu -17289 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 256-10 chr16 82849981 82850165 + 1.75 NA intron (NM_001220488, intron 2 of 14) Tigger1|DNA|TcMar-Tigger 76754 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 235.5-48 chr5 129886939 129887111 + 1.75 NA Intergenic L1MC5|LINE|L1 -17440 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 232.75-15 chr4 55007498 55007772 + 1.75 NA Intergenic Intergenic 117960 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 243.25-5 chr12 44194051 44194328 + 1.75 NA intron (NM_001286213, intron 3 of 6) L1MEd|LINE|L1 358108 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 284-6 chr11 101488410 101488682 + 1.75 NA intron (NM_004621, intron 4 of 12) intron (NM_004621, intron 4 of 12) 31359 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 255.5-22 chr4 40214914 40215155 + 1.75 NA intron (NM_001278361, intron 2 of 3) MamRep605|LTR?|LTR? 18003 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 331-18 chr8 137121988 137122349 + 1.75 NA Intergenic MIRc|SINE|MIR 291420 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 133.25-7 chr1 227143611 227143722 + 1.75 NA intron (NM_001366019, intron 8 of 36) Tigger17a|DNA|TcMar-Tigger 174826 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 336-8 chr2 209994473 209994836 + 1.75 NA intron (NM_032504, intron 63 of 63) Tigger4a|DNA|TcMar-Tigger -7911 NM_001278288 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 240.25-26 chr8 77911797 77912015 + 1.75 NA Intergenic Intergenic 461209 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 229.5-6 chr1 195115769 195116066 + 1.75 NA Intergenic Intergenic 972798 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 181.75-5 chr1 241818182 241818400 + 1.75 NA Intergenic Intergenic -29900 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 295.25-7 chr16 116888 117087 + 1.75 NA intron (NM_001039476, intron 2 of 10) AluSx|SINE|Alu 21686 NM_001077350 8131 Hs.19699 NM_012075 ENSG00000103148 NPRL3 C16orf35|CGTHBA|FFEVF3|HS-40|MARE|NPR3|RMD11 NPR3 like, GATOR1 complex subunit protein-coding 354.25-6 chr2 81243987 81244219 + 1.75 NA Intergenic MIRb|SINE|MIR 222843 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 150-83 chr8 137629545 137629700 + 1.75 NA Intergenic Zaphod|DNA|hAT-Tip100 -216034 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 142-16 chr12 121987755 121987905 + 1.75 NA intron (NM_144668, intron 19 of 21) MIRb|SINE|MIR -34054 NM_020993 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 155.25-66 chr7 31700313 31700425 + 1.75 NA intron (NM_001145123, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 13154 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 154.25-17 chr11 83906439 83906548 + 1.75 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -224068 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 167.25-51 chr3 122639205 122639335 + 1.75 NA TTS (NM_001308320) TTS (NM_001308320) 23655 NM_001308321 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 154-8 chr10 124843154 124843321 + 1.75 NA Intergenic Intergenic 41418 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 ABRAXAS2 ABRO1|FAM175B|KIAA0157 abraxas 2, BRISC complex subunit protein-coding 498.75 chr10 43566538 43566862 + 1.75 NA intron (NM_001099283, intron 1 of 1) L1ME4a|LINE|L1 1759 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 298.75-8 chr4 79797948 79798173 + 1.75 NA Intergenic MSTB|LTR|ERVL-MaLR -29411 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 178-11 chr11 79440422 79440543 + 1.75 NA intron (NM_001098816, intron 1 of 33) CpG 548 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 313.5-2 chr11 47403587 47403863 + 1.75 NA Intergenic Intergenic 2755 NR_039707 100616222 NR_039707 ENSG00000264583 MIR4487 mir-4487 microRNA 4487 ncRNA 273.75-2 chr1 77345983 77346190 + 1.75 NA intron (NM_012093, intron 6 of 13) Tigger2|DNA|TcMar-Tigger 62999 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 289.5-13 chr2 125697813 125698098 + 1.75 NA Intergenic L2a|LINE|L2 420030 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 133-12 chr11 84096512 84096601 + 1.75 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 176724 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 256.5-4 chr10 84577843 84578132 + 1.75 NA Intergenic L1M4|LINE|L1 152818 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 300.75-7 chr2 175874146 175874396 + 1.75 NA Intergenic MER5B|DNA|hAT-Charlie 127996 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 185-30 chr3 154680777 154680991 + 1.75 NA Intergenic Intergenic -250694 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 268-28 chr8 85045231 85045491 + 1.75 NA Intergenic L1MB1|LINE|L1 -61877 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 260.5-17 chr2 31356085 31356290 + 1.75 NA intron (NM_000379, intron 24 of 35) L1MDa|LINE|L1 58555 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 262.75-18 chr8 133444762 133445005 + 1.75 NA Intergenic L1MA8|LINE|L1 127004 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 193.25-27 chr4 28490144 28490362 + 1.75 NA Intergenic Intergenic -329329 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 172.5-50 chr3 144198302 144198421 + 1.75 NA Intergenic Intergenic 225280 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 259-12 chr14 72696321 72696612 + 1.75 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 179646 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 405.75-3 chr3 105183521 105183898 + 1.75 NA Intergenic L1MC5|LINE|L1 -183004 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 148.5-35 chr16 84989721 84989875 + 1.75 NA intron (NM_001145548, intron 3 of 8) intron (NM_001145548, intron 3 of 8) 21737 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 302.5-10 chr3 32581524 32581787 + 1.75 NA Intergenic Intergenic -10731 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 267 chr10 69089898 69090187 + 1.75 NA intron (NM_001321054, intron 1 of 1) intron (NM_001321054, intron 1 of 1) 1939 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 204.25-18 chr16 8272171 8272297 + 1.75 NA Intergenic Intergenic 317604 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 442 chr3 51316561 51316826 + 1.75 NA intron (NM_004947, intron 32 of 52) L1ME1|LINE|L1 -68598 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 114.25-78 chr4 96114612 96114688 + 1.75 NA Intergenic Intergenic -196053 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 126.25-68 chr4 150523022 150523128 + 1.75 NA intron (NM_001367550, intron 40 of 56) MLT1A1-int|LTR|ERVL-MaLR -56014 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 468.25 chr19 13512179 13512527 + 1.75 NA Intergenic Intergenic -5874 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 220.5-50 chr8 130795572 130795713 + 1.75 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 245267 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 315.75 chr18 32878266 32878593 + 1.75 NA Intergenic Intergenic -105406 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 399.75 chr1 222244288 222244886 + 1.75 NA Intergenic L1MC4|LINE|L1 -266067 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 219.25-13 chr18 5191960 5192134 + 1.75 NA intron (NM_001330553, intron 1 of 1) Tigger4b|DNA|TcMar-Tigger 5210 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 276.75-17 chr5 125605695 125605902 + 1.75 NA Intergenic MLT2B3|LTR|ERVL 112537 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 446.25 chr14 55691143 55691613 + 1.75 NA Intergenic Intergenic -74867 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 238.25-12 chr2 19114493 19114692 + 1.75 NA Intergenic Intergenic -87621 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 315.75-6 chr3 153921361 153921810 + 1.75 NA Intergenic Intergenic -159059 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 215.5-30 chr3 18215971 18216133 + 1.75 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 209287 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 296.25-4 chr2 68353762 68354005 + 1.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -11399 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 159.5-55 chr3 26383540 26383669 + 1.75 NA Intergenic Intergenic -239202 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 188.75-34 chr4 103311464 103311633 + 1.75 NA Intergenic L2a|LINE|L2 -113205 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 241.75-19 chr3 17558142 17558396 + 1.75 NA intron (NM_001349075, intron 1 of 22) intron (NM_001349075, intron 1 of 22) 141751 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 204.5-8 chr11 85314880 85315030 + 1.75 NA intron (NM_001142699, intron 3 of 27) LTR16D1|LTR|ERVL 312315 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 218-45 chr7 116230300 116230475 + 1.75 NA intron (NM_152829, intron 1 of 6) intron (NM_152829, intron 1 of 6) 7434 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 186.25-38 chr3 166045254 166045377 + 1.75 NA Intergenic L1PA15|LINE|L1 -207892 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 254.75-18 chr4 36095840 36096112 + 1.75 NA intron (NR_146894, intron 27 of 32) L3|LINE|CR1 147963 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 197-7 chr10 109438230 109438358 + 1.75 NA Intergenic L1MC4|LINE|L1 484952 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 383.5-10 chr9 28128009 28128256 + 1.75 NA intron (NM_152570, intron 5 of 6) MIR3|SINE|MIR -554266 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 218.5-54 chr8 117067452 117067673 + 1.75 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -67433 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 311.5-10 chr5 45345858 45346049 + 1.75 NA intron (NM_021072, intron 5 of 7) THE1C|LTR|ERVL-MaLR 350427 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 155.25-63 chr7 4373272 4373452 + 1.75 NA Intergenic FLAM_C|SINE|Alu -238525 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 268-11 chr17 79639397 79639658 + 1.75 NA Intergenic L1MA9|LINE|L1 -28476 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 208.5-18 chr13 55680290 55680451 + 1.75 NA Intergenic Intergenic 505916 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 166.75-50 chr5 94953609 94953776 + 1.75 NA intron (NM_001297777, intron 2 of 19) L1PREC2|LINE|L1 128174 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 256.25-17 chr8 105225520 105225764 + 1.75 NA Intergenic Intergenic -92796 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 293.75-9 chr20 37623221 37623758 + 1.75 NA promoter-TSS (NR_047461) promoter-TSS (NR_047461) -370 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 278-4 chr11 83265768 83266078 + 1.75 NA exon (NM_021825, exon 8 of 9) exon (NM_021825, exon 8 of 9) 20484 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 166.25-30 chr2 86104947 86105176 + 1.75 NA intron (NM_015425, intron 1 of 33) L2b|LINE|L2 825 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 237.25 chr1 74827467 74827663 + 1.75 NA Intergenic MER44D|DNA|TcMar-Tigger -94157 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 270.75-5 chr16 79917831 79918115 + 1.75 NA Intergenic Intergenic 122724 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 167.5-69 chr5 88708955 88709119 + 1.75 NA intron (NR_146284, intron 2 of 3) intron (NR_146284, intron 2 of 3) -17996 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 243.25-3 chr10 23840860 23841212 + 1.75 NA intron (NM_001098500, intron 1 of 18) MIR|SINE|MIR 146309 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 155-50 chr6 77130854 77130945 + 1.75 NA Intergenic Intergenic 333123 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 249.5-16 chr20 46386487 46386664 + 1.75 NA intron (NM_133171, intron 8 of 21) intron (NM_133171, intron 8 of 21) 20040 NM_001318253 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 402.75-2 chr4 83831677 83831979 + 1.75 NA Intergenic Intergenic 295720 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 225.25-17 chr21 18299279 18299424 + 1.75 NA intron (NM_002772, intron 18 of 24) intron (NM_002772, intron 18 of 24) 53476 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 193.25-14 chr17 49561155 49561293 + 1.75 NA intron (NR_103773, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 12840 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 215.5-15 chr14 60202914 60203103 + 1.75 NA Intergenic L1ME3G|LINE|L1 -33144 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 259-7 chr11 96103142 96103415 + 1.75 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -179071 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 314.25-3 chr10 53509047 53509302 + 1.75 NA Intergenic LTR49-int|LTR|ERV1 -737474 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 354.25-3 chr10 72209316 72209667 + 1.75 NA intron (NM_001198799, intron 3 of 12) AluJb|SINE|Alu 6465 NM_001369107 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 205.5-22 chr17 66435412 66435629 + 1.75 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -18666 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 240.25-17 chr3 68199559 68199775 + 1.75 NA intron (NM_001252216, intron 2 of 4) L1MC1|LINE|L1 195420 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 278-12 chr15 97498223 97498454 + 1.75 NA intron (NR_120324, intron 2 of 4) ERVL-E-int|LTR|ERVL 23473 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 239-3 chr1 157887349 157887572 + 1.75 NA Intergenic L1MD2|LINE|L1 -38507 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 296.5-8 chr11 123673194 123673413 + 1.75 NA Intergenic Intergenic -18696 NM_018400 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 200.25-43 chr7 6056902 6057042 + 1.75 NA intron (NM_001134335, intron 1 of 14) intron (NM_001134335, intron 1 of 14) 2203 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 302.5-8 chr20 51532064 51532273 + 1.75 NA intron (NM_001258292, intron 1 of 9) MIR|SINE|MIR 10551 NM_012340 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 291.5-12 chr4 8111248 8111616 + 1.75 NA intron (NM_001130084, intron 1 of 19) L1MC2|LINE|L1 -39444 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 257.25-9 chr16 81952616 81952819 + 1.75 NA intron (NM_002661, intron 31 of 32) L1MC4a|LINE|L1 58753 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 222.25-7 chr12 72792986 72793121 + 1.75 NA Intergenic Intergenic -366137 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 296-19 chr6 48796747 48797006 + 1.75 NA Intergenic Intergenic 666377 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 260-11 chr16 56487717 56487873 + 1.75 NA intron (NM_031885, intron 15 of 16) L1M5|LINE|L1 32229 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 312-11 chr4 85797397 85797653 + 1.75 NA intron (NM_001346093, intron 1 of 6) LTR41|LTR|ERVL 18727 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 229.25-32 chrX 42283938 42284164 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -360497 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 202-23 chr5 155969995 155970185 + 1.75 NA Intergenic Intergenic -356667 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 477.25 chr10 118575011 118575580 + 1.75 NA Intergenic L1MDa|LINE|L1 20353 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 220.75-26 chr6 9181080 9181262 + 1.75 NA Intergenic MER21C|LTR|ERVL 528962 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 281-25 chr8 118410913 118411260 + 1.75 NA intron (NM_001349811, intron 3 of 4) MLT1H1-int|LTR|ERVL-MaLR -209915 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 206.75-14 chr17 18249055 18249334 + 1.75 NA exon (NM_001256265, exon 15 of 29) exon (NM_001256265, exon 15 of 29) 9544 NM_002018 2314 Hs.513984 NM_002018 ENSG00000177731 FLII FLI|FLIL|Fli1 FLII actin remodeling protein protein-coding 114.25-97 chr7 68477768 68477848 + 1.75 NA Intergenic Intergenic 457555 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 266.5-22 chr7 44942308 44942547 + 1.75 NA Intergenic L1MC2|LINE|L1 36588 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 306.5-12 chr7 134698644 134699108 + 1.75 NA Intergenic Intergenic 52023 NM_001724 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 237.5-4 chr1 190360026 190360195 + 1.75 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 115900 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 296.25-9 chr5 141195309 141195516 + 1.75 NA 3' UTR (NM_018930, exon 1 of 1) 3' UTR (NM_018930, exon 1 of 1) 3059 NM_018930 56126 Hs.657953 NM_018930 ENSG00000120324 PCDHB10 PCDH-BETA10|PCHB10 protocadherin beta 10 protein-coding 331.25 chr1 108188956 108189151 + 1.75 NA intron (NM_013386, intron 1 of 9).2 LTR45C|LTR|ERV1 3782 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 185-16 chr16 82487176 82487368 + 1.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -139697 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 309.25-6 chr18 61276752 61277024 + 1.75 NA Intergenic L3|LINE|CR1 -56542 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 169.5-65 chr5 106589334 106589469 + 1.75 NA Intergenic Intergenic 421613 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 311.5-7 chr2 126119469 126119858 + 1.75 NA Intergenic Intergenic -1678 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 269.25-11 chr2 42321510 42321775 + 1.75 NA intron (NM_001145076, intron 18 of 21) MLT1J|LTR|ERVL-MaLR 38396 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 419-6 chr6 138175198 138175587 + 1.75 NA intron (NM_020340, intron 2 of 33) intron (NM_020340, intron 2 of 33) 13453 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 420-2 chr13 68798109 68798381 + 1.75 NA Intergenic L1MEf|LINE|L1 87080 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 359.25-3 chr18 5485992 5486257 + 1.75 NA intron (NM_001281535, intron 4 of 21) L1MA4|LINE|L1 54432 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 209.5-2 chr1 189881588 189881749 + 1.75 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat 594342 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 229.5-4 chr1 102576991 102577242 + 1.75 NA Intergenic MIR3|SINE|MIR 531380 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 236.5-47 chr8 78415639 78415826 + 1.75 NA Intergenic Intergenic -100608 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 156-53 chr5 97552442 97552558 + 1.75 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 47804 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 210.5-51 chr6 68948761 68949024 + 1.75 NA intron (NM_001704, intron 6 of 31) MIRc|SINE|MIR 313610 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 114.75-24 chr13 47733949 47734055 + 1.75 NA Intergenic L1MB4|LINE|L1 198620 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 194.5-35 chr2 161425556 161425673 + 1.75 NA 3' UTR (NM_006593, exon 6 of 6) 3' UTR (NM_006593, exon 6 of 6) 9317 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 289.25-12 chr5 72456389 72456592 + 1.75 NA exon (NM_152625, exon 3 of 5) exon (NM_152625, exon 3 of 5) 50920 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 414.75-4 chr3 43771741 43772167 + 1.75 NA Intergenic MIRc|SINE|MIR -80360 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 261.75-11 chr16 65110119 65110429 + 1.75 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 11789 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 238.75-14 chr4 61430519 61430708 + 1.75 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 228441 NM_001371342 142.75-45 chr2 123576927 123577067 + 1.75 NA Intergenic Intergenic 448177 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 295.5-14 chr2 122451550 122451759 + 1.75 NA Intergenic L1PA17|LINE|L1 621827 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 137-51 chr3 194841746 194841891 + 1.75 NA Intergenic L2c|LINE|L2 -73109 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 184.5-70 chr6 121836640 121836847 + 1.75 NA Intergenic Intergenic 401097 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 209.75-15 chr17 71946591 71946816 + 1.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 79276 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 346.25 chr12 39640326 39640687 + 1.75 NA intron (NM_001031748, intron 1 of 12) intron (NM_001031748, intron 1 of 12) 14323 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 164.5-80 chr6 56242364 56242513 + 1.75 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 5142 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 120.25-12 chr10 75304262 75304386 + 1.75 NA intron (NR_038226, intron 2 of 3) MamRep434|DNA|TcMar-Tigger 7941 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 270.75-21 chr8 80717505 80717819 + 1.75 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 156806 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 231.5-3 chr10 48225028 48225209 + 1.75 NA intron (NM_001018071, intron 10 of 28) intron (NM_001018071, intron 10 of 28) 26639 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 117.5-82 chr6 55014294 55014410 + 1.75 NA Intergenic Intergenic -92108 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 304-4 chr18 66846892 66847213 + 1.75 NA Intergenic L1P3|LINE|L1 -234532 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 201.75-38 chr8 103703602 103703913 + 1.75 NA intron (NM_001348497, intron 2 of 22) L1MA4|LINE|L1 -115463 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 320.25-7 chr2 215572578 215572886 + 1.75 NA Intergenic Intergenic 119025 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 210-8 chr12 71444128 71444389 + 1.75 NA intron (NR_110596, intron 1 of 19) intron (NR_110596, intron 1 of 19) 4460 NM_001277227 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 242.75-12 chr2 228345474 228345848 + 1.75 NA Intergenic AluSz6|SINE|Alu -163974 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 273.5-20 chr7 14372593 14372860 + 1.75 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -381301 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 334.75 chr10 108796648 108796859 + 1.75 NA Intergenic L1PA5|LINE|L1 -727460 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 236-19 chr18 36782028 36782285 + 1.75 NA 3' UTR (NM_001330572, exon 7 of 7) 3' UTR (NM_001330572, exon 7 of 7) 46846 NM_001271953 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 167.5-37 chr2 42618705 42618835 + 1.75 NA intron (NM_001330443, intron 4 of 16) AluJr|SINE|Alu 50138 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 248-16 chr3 78952679 78952960 + 1.75 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 66640 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 264.5-19 chr22 26476952 26477176 + 1.75 NA exon (NM_001349898, exon 5 of 15) exon (NM_001349898, exon 5 of 15) 2424 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 385.25-7 chr7 79014301 79014581 + 1.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 5453 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 234.75-32 chr4 75967680 75967931 + 1.75 NA intron (NM_001288984, intron 11 of 21) intron (NM_001288984, intron 11 of 21) -12985 NR_125906 101928809 Hs.637575 NR_125906 ENSG00000245928 LOC101928809 - uncharacterized LOC101928809 ncRNA 241.25-16 chr5 168465160 168465346 + 1.75 NA intron (NM_001161662, intron 21 of 22) intron (NM_001161662, intron 21 of 22) -21218 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 231.5-50 chr8 125938253 125938600 + 1.75 NA intron (NR_038447, intron 2 of 3) intron (NR_038447, intron 2 of 3) 12771 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 205.75-39 chr7 15422979 15423207 + 1.75 NA intron (NM_001004320, intron 4 of 12) intron (NM_001004320, intron 4 of 12) 138922 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 322.75-2 chr10 89513272 89513593 + 1.75 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 22162 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 155.25-45 chr3 79590935 79591089 + 1.75 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 83125 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 293.75-15 chr8 86281072 86281328 + 1.75 NA Intergenic MER4B-int|LTR|ERV1 -50819 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 283.75-13 chr5 59461676 59461945 + 1.75 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -104840 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 174.25-25 chr15 62578446 62578671 + 1.75 NA Intergenic AluSx|SINE|Alu 66623 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 292.5-4 chr13 94297657 94297951 + 1.75 NA intron (NM_005708, intron 5 of 8) intron (NM_005708, intron 5 of 8) -109813 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 207.75-37 chr7 34532487 34532674 + 1.75 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -125638 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 307.75-6 chr3 80635630 80635886 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -129139 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 297-14 chr2 150900765 150901088 + 1.75 NA Intergenic Intergenic 272029 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 162.5-20 chr12 72897615 72897791 + 1.75 NA Intergenic Intergenic -261487 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 197.25-61 chr8 82819798 82819984 + 1.75 NA Intergenic L1MA4|LINE|L1 -92213 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 316-6 chr11 26380213 26380436 + 1.75 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 48194 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 146.5-9 chr10 51722415 51722543 + 1.75 NA intron (NM_001098512, intron 3 of 17) MIRb|SINE|MIR -22884 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 255-4 chr11 36910618 36910871 + 1.75 NA Intergenic Intergenic -312465 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 284.5-19 chr7 54757417 54757798 + 1.75 NA intron (NM_001012456, intron 1 of 3) intron (NM_001012456, intron 1 of 3) 1604 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 211-24 chr4 86386617 86386785 + 1.75 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -15834 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 419-7 chr7 139110953 139111415 + 1.75 NA Intergenic Intergenic -1464 NM_020119 56829 Hs.133512 NM_020119 ENSG00000105939 ZC3HAV1 ARTD13|FLB6421|PARP13|ZAP|ZC3H2|ZC3HDC2 zinc finger CCCH-type containing, antiviral 1 protein-coding 232.25-3 chr10 75059450 75059662 + 1.75 NA promoter-TSS (NM_001003892) promoter-TSS (NM_001003892) -973 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 114.5-28 chr16 61235968 61236044 + 1.75 NA Intergenic Intergenic -180240 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 251.75-4 chr1 172548778 172549063 + 1.75 NA intron (NM_014283, intron 1 of 23) L1M5|LINE|L1 15770 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 233.75-37 chr9 73346306 73346505 + 1.75 NA Intergenic L2a|LINE|L2 194540 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 217.5-32 chr4 36168952 36169179 + 1.75 NA intron (NR_146894, intron 9 of 32) intron (NR_146894, intron 9 of 32) 74874 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 240.75-26 chr3 184188501 184188893 + 1.75 NA intron (NM_018358, intron 7 of 20) intron (NM_018358, intron 7 of 20) 2622 NM_001351300 55324 Hs.361323 NM_018358 ENSG00000161204 ABCF3 EST201864 ATP binding cassette subfamily F member 3 protein-coding 168.25-39 chr3 24390599 24390708 + 1.75 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -103434 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 222-7 chr11 95371978 95372121 + 1.75 NA Intergenic Intergenic -139574 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 284-4 chr11 16917917 16918272 + 1.75 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 7928 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 265.75 chr10 9532178 9532432 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -236712 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 152.5-9 chr10 47216885 47217110 + 1.75 NA Intergenic L1MEd|LINE|L1 -83200 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 170.75-63 chr6 93863944 93864200 + 1.75 NA Intergenic Intergenic 145769 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 199-23 chr2 67859255 67859466 + 1.75 NA Intergenic Intergenic -33798 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 145 chr1 39050706 39050868 + 1.75 NA Intergenic L1MD2|LINE|L1 24437 NM_004552 4725 Hs.632385 NM_004552 ENSG00000168653 NDUFS5 CI-15k|CI15K NADH:ubiquinone oxidoreductase subunit S5 protein-coding 247.5-3 chr10 19129044 19129404 + 1.75 NA intron (NM_001142308, intron 8 of 39) MER21C|LTR|ERVL 80423 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 363-10 chr6 155738268 155738562 + 1.75 NA Intergenic Intergenic -208382 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 318.5 chr1 193314134 193314559 + 1.75 NA intron (NR_125789, intron 1 of 3) L2b|LINE|L2 9601 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 255.25-8 chr12 45972266 45972468 + 1.75 NA intron (NM_004719, intron 1 of 14) AluJr|SINE|Alu 18207 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 258.5-4 chr11 94968962 94969277 + 1.75 NA intron (NM_016403, intron 5 of 6) L2|LINE|L2 4437 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 215.75-27 chr8 98451988 98452145 + 1.75 NA Intergenic Intergenic 25108 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 358-9 chr8 139684873 139685228 + 1.75 NA intron (NR_104210, intron 1 of 3) L1M5|LINE|L1 18073 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 188-12 chr14 66399410 66399620 + 1.75 NA Intergenic Intergenic -86856 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 392.75-2 chr18 8154592 8154930 + 1.75 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 212273 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 194.75-34 chr4 127033669 127033851 + 1.75 NA Intergenic Intergenic -599197 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 275.75-12 chr2 57293912 57294151 + 1.75 NA Intergenic L1MEd|LINE|L1 -613620 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 209.75-29 chr4 143438636 143438877 + 1.75 NA intron (NM_207123, intron 4 of 10) intron (NM_207123, intron 4 of 10) -74946 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 324-3 chr2 8384548 8384930 + 1.75 NA Intergenic Intergenic -56320 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 189.25-45 chr8 84170807 84171016 + 1.75 NA Intergenic Intergenic -11876 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 289.25-5 chr11 112240951 112241407 + 1.75 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat 14751 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 291.25-7 chr16 83834719 83834955 + 1.75 NA Intergenic Intergenic 26859 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 196.25-14 chr14 40309189 40309323 + 1.75 NA Intergenic Intergenic -645455 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 709.25 chr14 48550328 48551194 + 1.75 NA Intergenic L1M1|LINE|L1 -755747 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 205.25-23 chr3 55599762 55600041 + 1.75 NA intron (NM_015576, intron 16 of 16) MIR3|SINE|MIR 59568 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 341.5-8 chr8 122691543 122691870 + 1.75 NA intron (NR_126348, intron 2 of 3) MLT1K|LTR|ERVL-MaLR 2400 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 290.5-2 chr1 163275159 163275366 + 1.75 NA intron (NM_001254748, intron 2 of 5) L1M4a2|LINE|L1 46529 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 187-36 chr3 37442904 37443204 + 1.75 NA Intergenic Charlie16a|DNA|hAT-Charlie -9087 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 374-10 chr8 75618540 75618825 + 1.75 NA Intergenic Intergenic 78714 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 267-5 chr12 64695402 64695657 + 1.75 NA non-coding (NR_040718, exon 4 of 4) non-coding (NR_040718, exon 4 of 4) 63877 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 251-22 chr4 86387306 86387500 + 1.75 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -16536 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 279-10 chr2 66470190 66470419 + 1.75 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -29974 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 345-7 chr16 9924312 9924783 + 1.75 NA intron (NM_001134408, intron 3 of 13) L1MEc|LINE|L1 257520 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 296.5-9 chr14 46429881 46430248 + 1.75 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -41295 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 213.75-28 chr2 50468188 50468336 + 1.75 NA intron (NM_001330093, intron 16 of 22) intron (NM_001330093, intron 16 of 22) -120506 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 352-12 chrX 40993625 40994098 + 1.75 NA Intergenic Intergenic -91584 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 301-20 chr6 40509066 40509401 + 1.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 78131 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 272.5-3 chr2 38210057 38210261 + 1.75 NA Intergenic L1MD1|LINE|L1 79054 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 162.75-38 chr2 116302745 116302916 + 1.75 NA Intergenic Intergenic 959015 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 247.5-36 chr7 49974310 49974589 + 1.75 NA intron (NM_001159878, intron 7 of 7) L1MC4a|LINE|L1 118797 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 299 chr1 58956707 58956940 + 1.75 NA Intergenic Intergenic -63653 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 332.25-4 chr3 117359240 117359531 + 1.75 NA Intergenic L1PA8A|LINE|L1 331540 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 307.25-5 chr3 21947076 21947273 + 1.75 NA Intergenic Intergenic -9965 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 136.75-11 chr10 53149084 53149288 + 1.75 NA Intergenic MER5A|DNA|hAT-Charlie -377486 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 289.5-2 chr1 118923635 118923869 + 1.75 NA intron (NM_152380, intron 4 of 7) intron (NM_152380, intron 4 of 7) 64591 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 229.5-27 chr2 48051985 48052144 + 1.75 NA Intergenic MER41-int|LTR|ERV1 -146271 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 269.5-25 chr7 3481482 3481790 + 1.75 NA intron (NM_152744, intron 1 of 44) LTR33|LTR|ERVL 180384 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 222.75-18 chr16 84926309 84926469 + 1.75 NA Intergenic Charlie26a|DNA|hAT-Charlie 85146 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 155.75-72 chr8 132971739 132971947 + 1.75 NA exon (NM_003235, exon 33 of 48) exon (NM_003235, exon 33 of 48) 74738 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 307-6 chr20 6199972 6200256 + 1.75 NA Intergenic Intergenic -76570 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 290.5-27 chr8 144943984 144944233 + 1.75 NA intron (NM_006958, intron 2 of 2) AluY|SINE|Alu 6772 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 219.25-19 chr21 16068959 16069180 + 1.75 NA Intergenic Intergenic -1419 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 209-25 chr4 107279112 107279287 + 1.75 NA Intergenic Intergenic -242886 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 203.25-18 chr13 22175586 22175734 + 1.75 NA Intergenic Intergenic -34625 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 235-3 chr10 75173569 75173806 + 1.75 NA intron (NM_001174156, intron 4 of 5) intron (NM_001174156, intron 4 of 5) -36467 NM_001324088 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 173-5 chr10 68149927 68150125 + 1.75 NA intron (NR_045663, intron 5 of 17) intron (NR_045663, intron 5 of 17) 40538 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 315-11 chr20 59872705 59872920 + 1.75 NA intron (NM_014258, intron 35 of 44) intron (NM_014258, intron 35 of 44) 60825 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 175.25-11 chr11 9929603 9929768 + 1.75 NA TTS (NR_120539) TTS (NR_120539) 90543 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 246.75-3 chr1 208170576 208170781 + 1.75 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 73706 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 217.25-10 chr12 13874391 13874535 + 1.75 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 105893 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 217.75-27 chr3 174301740 174301904 + 1.75 NA Intergenic Intergenic -381026 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 211.25-2 chr1 81373845 81374005 + 1.75 NA intron (NM_001366003, intron 2 of 27) L3|LINE|CR1 67530 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 217-18 chr4 38008954 38009155 + 1.75 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 48656 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 337-8 chr3 86052927 86053336 + 1.75 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -225081 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 205.25-33 chr5 105658892 105659082 + 1.75 NA Intergenic Intergenic 559513 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 298.5-21 chr8 116495576 116495898 + 1.75 NA Intergenic Intergenic -156363 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 277 chr1 66386561 66386750 + 1.75 NA Intergenic L1ME4a|LINE|L1 32120 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 250.25-14 chr3 171833450 171833728 + 1.75 NA Intergenic Intergenic -9760 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 226.75-27 chr6 54914457 54914676 + 1.75 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 67795 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 222-10 chr13 44519185 44519338 + 1.75 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -44960 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 284.25-3 chr13 47663901 47664128 + 1.75 NA Intergenic Intergenic 268608 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 197.25-60 chr8 30736800 30736980 + 1.75 NA Intergenic L1ME3E|LINE|L1 -7274 NM_005671 7993 Hs.153678 NM_005671 ENSG00000104691 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 163.75-46 chr3 169639817 169639923 + 1.75 NA intron (NM_001366473, intron 1 of 15) MLT1I|LTR|ERVL-MaLR 23842 NM_004991 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 280.25-6 chr18 71837004 71837236 + 1.75 NA Intergenic Intergenic -54894 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 169.5-51 chr3 21844775 21844917 + 1.75 NA Intergenic Intergenic -93636 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 290.5-10 chr14 66950068 66950354 + 1.75 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -239229 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 227.5-37 chr4 12118847 12119077 + 1.75 NA Intergenic Intergenic -104489 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 298.5-11 chr18 13585069 13585277 + 1.75 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -25941 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 268-3 chr1 248319204 248319382 + 1.75 NA Intergenic L1PB1|LINE|L1 5275 NM_001004691 391196 Hs.530570 NM_001004691 ENSG00000177186 OR2M7 OR1-58 olfactory receptor family 2 subfamily M member 7 protein-coding 304.75-12 chr6 160033438 160033786 + 1.75 NA intron (NM_000876, intron 9 of 47) intron (NM_000876, intron 9 of 47) -25948 NR_047511 100271873 Hs.742166 NR_047511 ENSG00000268257 AIRN AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 antisense of IGF2R non-protein coding RNA ncRNA 237.5-33 chr5 38149771 38149984 + 1.75 NA intron (NR_134272, intron 1 of 1) L2c|LINE|L2 1397 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 290.75-10 chr4 104971299 104971610 + 1.75 NA Intergenic Intergenic -174421 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 328-6 chr5 88800567 88800867 + 1.75 NA intron (NM_001364333, intron 3 of 9) intron (NM_001364333, intron 3 of 9) -15206 NM_001364353 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 201-36 chr4 60944659 60944911 + 1.75 NA Intergenic L1ME4a|LINE|L1 22166 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 149.75-51 chr5 45517969 45518085 + 1.75 NA intron (NM_021072, intron 2 of 7) L4_A_Mam|LINE|RTE-X 178353 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 208.75-16 chr2 46049565 46049845 + 1.75 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -247702 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 132.75-59 chr21 22653281 22653434 + 1.75 NA Intergenic Intergenic -425927 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 300 chr1 172651836 172652057 + 1.75 NA Intergenic L1M4|LINE|L1 -7062 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 373-5 chr9 20512877 20513125 + 1.75 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) -10659 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 223.25-31 chr8 114048941 114049167 + 1.75 NA Intergenic Intergenic -612115 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 253.5-33 chr5 39509009 39509327 + 1.75 NA Intergenic Intergenic -11263 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 218.5-40 chr5 39290062 39290261 + 1.75 NA intron (NM_001737, intron 9 of 10) L1MA8|LINE|L1 -19512 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 265.25-26 chr7 157660177 157660423 + 1.75 NA intron (NM_130843, intron 12 of 21) intron (NM_130843, intron 12 of 21) -85878 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 201-42 chr5 56207078 56207283 + 1.75 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 26150 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 148-12 chr11 64434934 64435158 + 1.75 NA Intergenic L1ME4a|LINE|L1 -14011 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 197.5-31 chr2 85012500 85012869 + 1.75 NA intron (NM_020122, intron 1 of 6) intron (NM_020122, intron 1 of 6) 41523 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 203.75-3 chr11 8351727 8351861 + 1.75 NA Intergenic Intergenic -83007 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 198.5-46 chr6 21821206 21821412 + 1.75 NA intron (NR_015410, intron 4 of 11) intron (NR_015410, intron 4 of 11) 154896 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 191-47 chr6 125503524 125503706 + 1.75 NA Intergenic Intergenic -170738 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 253.25-17 chr22 36003634 36003794 + 1.75 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) 24823 NM_001349999 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 335.5-9 chr3 73881286 73881668 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 72233 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 486.75 chr3 180874170 180874529 + 1.75 NA Intergenic Intergenic -4171 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 337.75 chr1 220917457 220917724 + 1.75 NA Intergenic Intergenic -37450 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 322.5-6 chr2 11650795 11650992 + 1.75 NA Intergenic Intergenic 19302 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 123.75-36 chr13 71198682 71198816 + 1.75 NA Intergenic Intergenic 183608 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 174-3 chr1 159724884 159725080 + 1.75 NA Intergenic Intergenic -10393 NM_000567 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 191.75-7 chr12 10057696 10057812 + 1.75 NA intron (NM_207345, intron 5 of 8) L1ME4a|LINE|L1 27072 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 260-18 chr20 16832140 16832321 + 1.75 NA Intergenic MIR|SINE|MIR 83877 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 223.25-34 chr9 15274174 15274314 + 1.75 NA intron (NM_001168341, intron 1 of 17) intron (NM_001168341, intron 1 of 17) -24026 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 166.5-49 chr18 76528165 76528269 + 1.75 NA promoter-TSS (NR_015417) promoter-TSS (NR_015417) -438 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 188.25-49 chr5 180834596 180834757 + 1.75 NA non-coding (NR_027183, exon 3 of 3) non-coding (NR_027183, exon 3 of 3) -3058 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 328.25-4 chr10 126731634 126732084 + 1.75 NA Intergenic L2a|LINE|L2 -61349 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 334.5-10 chr5 28568192 28568453 + 1.75 NA Intergenic Intergenic -280657 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 156-71 chr9 71487647 71487816 + 1.75 NA Intergenic Intergenic -40760 NM_001366141 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 179-48 chr5 101284964 101285223 + 1.75 NA Intergenic Intergenic -381811 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 186-27 chr2 75766428 75766583 + 1.75 NA Intergenic Intergenic -55590 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 231.5-51 chr8 129174423 129174574 + 1.75 NA Intergenic MER63C|DNA|hAT-Blackjack 66742 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 247.25-23 chr4 57095722 57096206 + 1.75 NA intron (NM_001553, intron 1 of 4) L2a|LINE|L2 -13798 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 208.5-73 chr8 84149131 84149508 + 1.75 NA Intergenic L1MA8|LINE|L1 -33468 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 291.25-16 chr4 52652327 52652610 + 1.75 NA intron (NM_001286767, intron 1 of 8) L1ME3Cz|LINE|L1 4071 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 374-9 chr6 162274011 162274295 + 1.75 NA intron (NM_004562, intron 2 of 11) L1MC5|LINE|L1 -452979 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 270-25 chr5 115223849 115224102 + 1.75 NA intron (NM_005023, intron 6 of 8) intron (NM_005023, intron 6 of 8) 38902 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 207.5-59 chr8 31965778 31966059 + 1.75 NA intron (NM_013962, intron 1 of 4) L1PA17|LINE|L1 -59818 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 318.75-8 chr2 164714868 164715105 + 1.75 NA intron (NM_001365670, intron 7 of 13) intron (NM_001365670, intron 7 of 13) -27209 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 350.75-5 chr2 103670462 103670767 + 1.75 NA Intergenic Intergenic -686185 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 426.5-3 chr2 219008624 219008929 + 1.75 NA intron (NM_194302, intron 29 of 34) L2c|LINE|L2 6561 NR_046086 100129175 Hs.147762 NR_046086 ENSG00000224090 LOC100129175 - uncharacterized LOC100129175 ncRNA 130.25-9 chr1 234056632 234056785 + 1.75 NA intron (NM_173508, intron 2 of 7) L1MB8|LINE|L1 152032 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 321.75-3 chr13 30299805 30300035 + 1.75 NA intron (NM_032116, intron 1 of 10) intron (NM_032116, intron 1 of 10) 7091 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 232.5-6 chr10 43100086 43100361 + 1.75 NA intron (NM_020630, intron 1 of 18) L2|LINE|L2 -4509 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 235-30 chr3 122069148 122069382 + 1.75 NA intron (NM_001206925, intron 1 of 5) L2b|LINE|L2 -8584 NM_176892 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 136-52 chr4 53425987 53426146 + 1.75 NA intron (NM_001134938, intron 9 of 14) intron (NM_001134938, intron 9 of 14) 48413 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 360-8 chr4 95408374 95408825 + 1.75 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 140374 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 277-13 chr18 3336321 3336626 + 1.75 NA Intergenic MER31-int|LTR|ERV1 14086 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 194.5-59 chr5 44754835 44754984 + 1.75 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 53884 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 220-20 chr20 33890582 33890741 + 1.75 NA Intergenic L1MCa|LINE|L1 79313 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 276.75-14 chr3 188713375 188713623 + 1.75 NA intron (NM_001167672, intron 6 of 9) L1MC4|LINE|L1 24718 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 289-10 chr3 42636626 42636808 + 1.75 NA intron (NM_001349126, intron 14 of 18) intron (NM_001349126, intron 14 of 18) -16980 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 193.25-29 chr4 36540329 36540537 + 1.75 NA intron (NR_149124, intron 3 of 4) L3|LINE|CR1 101467 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 298.25-9 chr2 31387036 31387274 + 1.75 NA intron (NM_000379, intron 8 of 35) intron (NM_000379, intron 8 of 35) 27587 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 161.25-6 chr1 175874710 175874836 + 1.75 NA Intergenic Intergenic -2570 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 237.75-8 chr11 34552025 34552239 + 1.75 NA Intergenic L1MDa|LINE|L1 -38338 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 303.25-6 chr16 62164373 62164630 + 1.75 NA Intergenic L1PA17|LINE|L1 -128063 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 217.5-9 chr12 118561338 118561514 + 1.75 NA Intergenic Intergenic 184871 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 387.75-2 chr17 57685478 57685862 + 1.75 NA TTS (NM_138962) TTS (NM_138962) 59629 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 297.25-16 chr5 58569012 58569475 + 1.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -11000 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 192.5-2 chr1 114618459 114618658 + 1.75 NA intron (NM_198459, intron 4 of 17) intron (NM_198459, intron 4 of 17) -36943 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 175-12 chr12 66325447 66325633 + 1.75 NA intron (NM_001370285, intron 11 of 12) MER96B|DNA|hAT-Tip100 22995 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 301.25-4 chr3 156690705 156690959 + 1.75 NA intron (NM_015508, intron 2 of 5) intron (NM_015508, intron 2 of 5) 14168 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 214.5-3 chr1 117756137 117756280 + 1.75 NA Intergenic Intergenic 150160 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 258-28 chr6 49191445 49191711 + 1.75 NA Intergenic L1M4|LINE|L1 271675 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 330-4 chr18 6387857 6388216 + 1.75 NA intron (NM_001365765, intron 1 of 18) L1ME3G|LINE|L1 -13611 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 280.5-15 chr2 167585437 167585803 + 1.75 NA Intergenic L1ME2|LINE|L1 -233052 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 123.75-47 chr17 81897932 81898027 + 1.75 NA intron (NM_001289418, intron 2 of 2) intron (NM_001289418, intron 2 of 2) -4259 NM_148896 256933 Hs.569843 NM_148896 ENSG00000183979 NPB L7|PPL7|PPNPB neuropeptide B protein-coding 291-18 chr8 131217717 131217966 + 1.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -176932 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 160-32 chr4 25075754 25075941 + 1.75 NA Intergenic Intergenic -44901 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 212.5-29 chr2 206991134 206991323 + 1.75 NA Intergenic A-rich|Low_complexity|Low_complexity 51710 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 413 chr12 133211573 133211862 + 1.75 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 24119 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 179.25-50 chr7 91102399 91102530 + 1.75 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -161969 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 270.75-19 chr5 63688368 63688662 + 1.75 NA Intergenic PABL_B-int|LTR|ERV1 273777 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 181.25-29 chr2 64977451 64977655 + 1.75 NA Intergenic Intergenic -10926 NM_001348407 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 415.5-5 chr8 112144548 112144831 + 1.75 NA Intergenic Intergenic -498804 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 230.25-4 chr12 108500782 108500933 + 1.75 NA Intergenic MER5A1|DNA|hAT-Charlie -14420 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 247-4 chr10 114035967 114036118 + 1.75 NA Intergenic Intergenic -7824 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 234.5-44 chr9 74887972 74888219 + 1.75 NA promoter-TSS (NM_001177310) promoter-TSS (NM_001177310) -174 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 248.5-22 chr5 10228166 10228373 + 1.75 NA intron (NR_047668, intron 3 of 3) MER104|DNA|TcMar-Tc2 21619 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 155.75-78 chrX 130300908 130301106 + 1.75 NA Intergenic L1MB5|LINE|L1 -32108 NM_017666 55609 Hs.308418 NM_017666 ENSG00000056277 ZNF280C SUHW3|ZNF633|ZPET zinc finger protein 280C protein-coding 189-41 chr5 75089565 75089705 + 1.75 NA intron (NM_001164443, intron 22 of 24) intron (NM_001164443, intron 22 of 24) -37077 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 361.75-2 chr2 24417889 24418248 + 1.75 NA Intergenic Intergenic -57532 NM_001348186 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 451.75-2 chr5 93751199 93751537 + 1.75 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -9768 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 457.25 chr5 106114094 106114511 + 1.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 896712 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 239.25-4 chr10 59203869 59204071 + 1.75 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 26503 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 259-20 chr21 15027604 15027796 + 1.75 NA intron (NM_003489, intron 2 of 3) intron (NM_003489, intron 2 of 3) 37300 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 382.5-9 chr8 81733396 81733760 + 1.75 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 1130 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 194.25-35 chr3 30205607 30205743 + 1.75 NA Intergenic L1ME1|LINE|L1 -271519 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 519 chr10 17936767 17937542 + 1.75 NA Intergenic MIRb|SINE|MIR -14685 NM_001282733 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 303.5-19 chr8 97473780 97474129 + 1.75 NA Intergenic MIRb|SINE|MIR -27457 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 335.75-7 chr8 114535564 114535769 + 1.75 NA Intergenic Intergenic -1098727 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185-24 chr20 42524717 42524875 + 1.75 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -160687 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 227.25-36 chr7 45542310 45542511 + 1.75 NA Intergenic Intergenic -31730 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 236.25-10 chr15 69539796 69540040 + 1.75 NA Intergenic MER81|DNA|hAT-Blackjack -21802 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 230.75-18 chr5 30910891 30911027 + 1.75 NA Intergenic Intergenic -282727 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 284.5-21 chr8 84872396 84872644 + 1.75 NA intron (NM_001287244, intron 5 of 7) Charlie18a|DNA|hAT-Charlie 166593 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 261-13 chr14 64271989 64272495 + 1.75 NA intron (NR_073497, intron 1 of 6) L1MA3|LINE|L1 10833 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 277.5-5 chr14 66542273 66542560 + 1.75 NA intron (NM_001024218, intron 1 of 21) L2a|LINE|L2 35009 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 193.75-20 chr2 35557098 35557277 + 1.75 NA Intergenic Intergenic 85782 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 213-51 chr9 70305954 70306109 + 1.75 NA intron (NM_015110, intron 11 of 24) MIR|SINE|MIR 47053 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 260-20 chr22 24952090 24952321 + 1.75 NA Intergenic CpG -5510 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 260-19 chr20 48070346 48070514 + 1.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -80313 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 436.75 chr18 68122526 68122948 + 1.75 NA Intergenic Intergenic -307915 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 338.75-2 chr22 25025205 25025511 + 1.75 NA Intergenic L2c|LINE|L2 -2616 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 226.75-23 chr5 43445884 43446133 + 1.75 NA 3' UTR (NM_022483, exon 3 of 3) 3' UTR (NM_022483, exon 3 of 3) -33617 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 387.5-4 chr14 43725240 43725658 + 1.75 NA Intergenic Intergenic 781834 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 192.75-26 chr3 94732820 94733033 + 1.75 NA Intergenic Intergenic -205337 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 204.25-15 chr14 63115822 63115983 + 1.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -70444 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 472.75 chr5 56904614 56905199 + 1.75 NA Intergenic Intergenic -4354 NM_001323022 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 288.5-16 chr5 63852317 63852710 + 1.75 NA Intergenic THE1C|LTR|ERVL-MaLR 109779 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 449-4 chr8 63912928 63913317 + 1.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 143692 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 264.25-9 chr22 45819493 45819789 + 1.75 NA intron (NM_013236, intron 10 of 11) intron (NM_013236, intron 10 of 11) 59117 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 186-20 chr17 67934077 67934202 + 1.75 NA intron (NM_182641, intron 18 of 27) intron (NM_182641, intron 18 of 27) 59467 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 194.5-50 chr3 124470310 124470441 + 1.75 NA intron (NM_001024660, intron 25 of 59) intron (NM_001024660, intron 25 of 59) 96043 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 213.75-14 chr11 74630165 74630384 + 1.75 NA intron (NM_001363597, intron 9 of 11) intron (NM_001363597, intron 9 of 11) 37692 NM_001363597 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 124.75-9 chr1 229896776 229896926 + 1.75 NA Intergenic Intergenic -2943 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 235.25-13 chr2 103010299 103010548 + 1.75 NA Intergenic Intergenic -25994 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 240-4 chr10 33610046 33610208 + 1.75 NA Intergenic Intergenic 162553 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 128.75-17 chr11 97533247 97533357 + 1.75 NA Intergenic L1ME2|LINE|L1 1024877 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 131-45 chr4 28612310 28612470 + 1.75 NA Intergenic L1M3|LINE|L1 -207192 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 167.75-44 chr3 32215684 32215873 + 1.75 NA Intergenic Intergenic -22901 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 242.75-25 chr8 102466551 102466767 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -53959 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 226.75-17 chr3 23564057 23564260 + 1.75 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -241797 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 258.75-24 chr6 43480251 43480509 + 1.75 NA intron (NM_001350561, intron 3 of 11) intron (NM_001350561, intron 3 of 11) 2810 NM_001350570 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 320.5-6 chr14 64793886 64794203 + 1.75 NA intron (NM_001024858, intron 12 of 34) intron (NM_001024858, intron 12 of 34) -8358 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 309-7 chr12 27054500 27054754 + 1.75 NA Intergenic L1ME3|LINE|L1 27895 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 152.25-47 chr5 5769165 5769287 + 1.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger 346549 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 176.75-31 chr22 49733815 49734001 + 1.75 NA Intergenic MLT1J1|LTR|ERVL-MaLR -76389 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 212.25-31 chr4 36215128 36215265 + 1.75 NA intron (NR_146894, intron 2 of 32) L1ME2|LINE|L1 28743 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 313.25-4 chr5 133806898 133807227 + 1.75 NA Intergenic Intergenic -106615 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 222.75-4 chr10 5161772 5161992 + 1.75 NA non-coding (NR_027916, exon 3 of 8) non-coding (NR_027916, exon 3 of 8) 23305 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 164.25-58 chr8 106256773 106256898 + 1.75 NA Intergenic L1PB1|LINE|L1 -13343 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 220.25-43 chr9 107783446 107783660 + 1.75 NA Intergenic Charlie1|DNA|hAT-Charlie -293784 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 247.75-20 chr4 126443436 126443626 + 1.75 NA Intergenic Intergenic 936272 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 214.25-14 chr14 60606593 60606831 + 1.75 NA Intergenic L2a|LINE|L2 -32504 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 268-27 chr8 40238540 40238815 + 1.75 NA Intergenic L1M1|LINE|L1 85195 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 248-15 chr20 63301499 63301705 + 1.75 NA intron (NM_020882, intron 3 of 35) L1MEd|LINE|L1 8416 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 253.25-19 chr3 73860675 73860928 + 1.75 NA intron (NR_146637, intron 2 of 3) intron (NR_146637, intron 2 of 3) 51557 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 218.75-30 chr5 42601618 42601814 + 1.75 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 35852 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 125.5-51 chr15 78589774 78589891 + 1.75 NA exon (NM_000745, exon 5 of 6) exon (NM_000745, exon 5 of 6) 24312 NM_000745 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 261-4 chr10 82585692 82585974 + 1.75 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -352913 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 290.5-25 chr8 130373946 130374220 + 1.75 NA intron (NM_001247996, intron 2 of 30) MIRb|SINE|MIR 69577 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 284.25-23 chr7 19126786 19127021 + 1.75 NA Intergenic Intergenic -9267 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 138.25-42 chr2 95044090 95044227 + 1.75 NA intron (NM_022440, intron 1 of 1) L1MB8|LINE|L1 18450 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 201.25 chr1 80920171 80920363 + 1.75 NA Intergenic MSTB2|LTR|ERVL-MaLR 278980 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 223.25-4 chr10 63938389 63938671 + 1.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -416640 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 174.75-46 chr5 126568589 126568740 + 1.75 NA intron (NM_001202404, intron 8 of 15) intron (NM_001202404, intron 8 of 15) 26555 NM_001202404 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 115.25-37 chr16 60500099 60500219 + 1.75 NA Intergenic Intergenic -140366 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 244-18 chr4 34960928 34961125 + 1.75 NA Intergenic Intergenic -691279 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 220.5-27 chr2 60777749 60777940 + 1.75 NA intron (NM_022894, intron 8 of 21) Tigger1|DNA|TcMar-Tigger 21576 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 232-16 chr22 34902545 34902823 + 1.75 NA non-coding (NR_138042, exon 2 of 5) non-coding (NR_138042, exon 2 of 5) 95232 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 376.75 chr10 91399569 91400011 + 1.75 NA intron (NR_024467, intron 3 of 4) L1MA9|LINE|L1 -9445 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 174.75-34 chr3 99431295 99431446 + 1.75 NA Intergenic Intergenic -207224 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 248.5-5 chr10 117909120 117909379 + 1.75 NA Intergenic Intergenic -137572 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 187-47 chr5 25306164 25306363 + 1.75 NA Intergenic Intergenic 115310 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 278.5-26 chr6 157353090 157353405 + 1.75 NA Intergenic L1ME3|LINE|L1 -27943 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 465.25 chr3 33165122 33165480 + 1.75 NA intron (NM_015551, intron 4 of 4) L1ME3A|LINE|L1 51343 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 226.5-38 chr4 61973907 61974080 + 1.75 NA intron (NM_001371343, intron 16 of 23) AluJb|SINE|Alu 187772 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 145.75-6 chr12 5815563 5815704 + 1.75 NA intron (NM_001278596, intron 7 of 25) L4_B_Mam|LINE|RTE-X 129626 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 241-29 chr5 31327406 31327615 + 1.75 NA 3' UTR (NM_004932, exon 12 of 12) 3' UTR (NM_004932, exon 12 of 12) 133824 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 272.5-5 chr2 171655732 171656029 + 1.75 NA Intergenic Intergenic -31589 NM_001378 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 141-33 chr18 44120355 44120456 + 1.75 NA Intergenic Intergenic 411292 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 274.5-3 chr11 37963905 37964134 + 1.75 NA Intergenic Intergenic 25418 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 148.25-57 chr5 32433184 32433306 + 1.75 NA intron (NM_016107, intron 2 of 19) Looper|DNA|PiggyBac 11495 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 262.25-16 chr20 36627342 36627589 + 1.75 NA intron (NM_175077, intron 5 of 7) intron (NM_175077, intron 5 of 7) 18731 NM_032214 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 223.25-17 chr3 414669 414983 + 1.75 NA Intergenic Intergenic -29031 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 415.25-2 chr5 104654122 104654584 + 1.75 NA Intergenic L1MA4A|LINE|L1 -445121 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 266.25-10 chr17 73325466 73325635 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -13549 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 248.5-21 chr4 87451353 87451586 + 1.75 NA intron (NM_024047, intron 5 of 7) intron (NM_024047, intron 5 of 7) 28872 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 234.25-29 chr5 136798378 136798606 + 1.75 NA Intergenic L1PA17|LINE|L1 -329705 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 251-33 chr8 131915581 131915804 + 1.75 NA intron (NM_001323555, intron 1 of 22) intron (NM_001323555, intron 1 of 22) -1081 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 434.5-4 chr7 7693335 7693728 + 1.75 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 25076 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 210-18 chr2 79484979 79485193 + 1.75 NA Intergenic Intergenic 15758 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 278.5-15 chr15 82051418 82051710 + 1.75 NA Intergenic Intergenic -5546 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 237 chr1 67536253 67536536 + 1.75 NA Intergenic MIRb|SINE|MIR -105992 NM_001018067 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 290.5-29 chrX 78955106 78955500 + 1.75 NA intron (NM_014499, intron 3 of 3) LTR49|LTR|ERV1 9912 NM_001324218 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 181.25-54 chr6 165089509 165089700 + 1.75 NA Intergenic Intergenic 220001 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 173.75-38 chr5 75958977 75959167 + 1.75 NA Intergenic Intergenic -124311 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 413.75 chr12 60251827 60252224 + 1.75 NA Intergenic Intergenic 562655 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 281.5-4 chr11 111373112 111373333 + 1.75 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 6053 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 173-36 chr22 29207916 29208027 + 1.75 NA intron (NM_001267895, intron 1 of 14) MIRb|SINE|MIR 2075 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 301.5-13 chr4 61686126 61686457 + 1.75 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 475474 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 217.75-3 chr10 62101321 62101577 + 1.75 NA Intergenic L1M5|LINE|L1 52092 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 368.25-5 chr8 47586377 47586604 + 1.75 NA intron (NM_001352958, intron 10 of 21) L1MD1|LINE|L1 -67598 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 185-10 chr12 12977558 12977678 + 1.75 NA intron (NM_015987, intron 3 of 3) intron (NM_015987, intron 3 of 3) -2219 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 175.5-34 chr16 76001162 76001324 + 1.75 NA Intergenic Intergenic -274753 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 316.75-9 chr8 114367337 114367566 + 1.75 NA Intergenic L1M1|LINE|L1 -930512 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 194-13 chr12 131507516 131507676 + 1.75 NA Intergenic L2|LINE|L2 140525 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 230.75-12 chr21 16366858 16367145 + 1.75 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -52202 NR_136545 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 449-3 chr2 72593419 72593829 + 1.75 NA intron (NR_135774, intron 6 of 19) L1MEg|LINE|L1 232409 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 176.25-16 chr12 43730957 43731080 + 1.75 NA intron (NM_001098615, intron 8 of 8) intron (NM_001098615, intron 8 of 8) 27772 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 273-12 chr2 49739557 49739944 + 1.75 NA Intergenic Intergenic 234453 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 234 chr1 63284897 63285114 + 1.75 NA intron (NR_038252, intron 3 of 11) AluSz|SINE|Alu 32252 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 185-18 chr2 50590075 50590241 + 1.75 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 106104 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 242-28 chr3 108637681 108637871 + 1.75 NA intron (NM_014648, intron 12 of 32) intron (NM_014648, intron 12 of 32) 48054 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 191.75-28 chr3 79729875 79730055 + 1.75 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 38033 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 235-38 chr5 159330546 159330821 + 1.75 NA promoter-TSS (NM_002187) promoter-TSS (NM_002187) -210 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 354.75-7 chr3 146452382 146452839 + 1.75 NA intron (NM_001199978, intron 7 of 9) intron (NM_001199978, intron 7 of 9) 16691 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 382.5-8 chr7 29143379 29143758 + 1.75 NA intron (NM_001371261, intron 2 of 13) intron (NM_001371261, intron 2 of 13) 2969 NM_031311 54504 Hs.233389 NM_019029 ENSG00000106066 CPVL HVLP carboxypeptidase vitellogenic like protein-coding 333.5-9 chr2 75850933 75851180 + 1.75 NA Intergenic Intergenic -140141 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 166.75-32 chr2 101590407 101590515 + 1.75 NA Intergenic L1ME3B|LINE|L1 -107242 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 398.25-2 chr8 76780158 76780537 + 1.75 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -97072 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 198-46 chr7 3548025 3548275 + 1.75 NA intron (NM_152744, intron 1 of 44) L1M5|LINE|L1 246898 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 200.5-17 chr14 50141451 50141573 + 1.75 NA intron (NM_006939, intron 16 of 22) AluJr|SINE|Alu -24940 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 375.25-3 chr14 70137917 70138293 + 1.75 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -49003 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 267.5-37 chr9 96665531 96665788 + 1.75 NA Intergenic Intergenic -10342 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 332.25-6 chr8 23782896 23783191 + 1.75 NA Intergenic Intergenic 71763 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 209.75-26 chr3 51541075 51541318 + 1.75 NA promoter-TSS (NM_001322257) promoter-TSS (NM_001322257) -393 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 145-2 chr1 216408534 216408669 + 1.75 NA intron (NM_206933, intron 3 of 71) MER44C|DNA|TcMar-Tigger 14795 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 350.25-7 chr3 29002842 29003196 + 1.75 NA Intergenic L1MC2|LINE|L1 277920 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 286-20 chr4 138270332 138270621 + 1.75 NA Intergenic Intergenic -28127 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 317.25-17 chrX 96940620 96940916 + 1.75 NA intron (NM_007309, intron 12 of 26) intron (NM_007309, intron 12 of 26) 56860 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 250.25-9 chr20 13237074 13237291 + 1.75 NA TTS (NR_040043) TTS (NR_040043) 2505 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 274.75-16 chr4 37899377 37899592 + 1.75 NA intron (NM_001253912, intron 1 of 20) intron (NM_001253912, intron 1 of 20) 8400 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 325.25-13 chr6 43350413 43350716 + 1.75 NA intron (NM_014345, intron 5 of 9) AluJb|SINE|Alu 19083 NM_014345 24149 Hs.509718 NM_014345 ENSG00000171467 ZNF318 HRIHFB2436|TZF|ZFP318 zinc finger protein 318 protein-coding 334.75-2 chr10 115064713 115065059 + 1.75 NA Intergenic Intergenic -28479 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 282.75-14 chr5 167389916 167390250 + 1.75 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -183576 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 265.25-17 chr2 39427871 39428098 + 1.75 NA intron (NM_003618, intron 1 of 33) intron (NM_003618, intron 1 of 33) 9301 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 141.25-27 chr13 62174790 62174923 + 1.75 NA Intergenic Intergenic -37426 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 219.5-46 chr7 7625877 7626164 + 1.75 NA Intergenic MER11C|LTR|ERVK -14732 NM_001302349 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 368.75 chr10 92432566 92432952 + 1.75 NA Intergenic Intergenic 14098 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 195.25-41 chr6 141201524 141201786 + 1.75 NA Intergenic Intergenic 517841 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 299-11 chr2 130740992 130741314 + 1.75 NA Intergenic L1MEg|LINE|L1 12083 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 242-37 chr8 83881664 83881825 + 1.75 NA Intergenic Intergenic -301043 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 235.75-9 chr12 124108273 124108446 + 1.75 NA intron (NM_001347902, intron 2 of 4) MER63C|DNA|hAT-Blackjack 135144 NM_001347902 100533183 Hs.524828 NM_001204299 ENSG00000178882 ZNF664-RFLNA - ZNF664-RFLNA readthrough protein-coding 199-31 chr3 120902403 120902581 + 1.75 NA Intergenic Intergenic -5713 NM_001308330 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 210.25-49 chr8 78697023 78697188 + 1.75 NA intron (NM_001362969, intron 5 of 9) intron (NM_001362969, intron 5 of 9) 27269 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 185.25-38 chr4 104507639 104507923 + 1.75 NA intron (NR_125926, intron 1 of 9) L2a|LINE|L2 -12887 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 188.25-39 chr3 141064026 141064204 + 1.75 NA intron (NM_080862, intron 1 of 2) L1M7|LINE|L1 12768 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 320.25 chr1 159586222 159586539 + 1.75 NA Intergenic Intergenic -1446 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 300.5-8 chr17 11308593 11308914 + 1.75 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 67330 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 276-19 chr7 106971463 106971639 + 1.75 NA Intergenic Intergenic -73154 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 196.75-46 chr9 26133653 26133799 + 1.75 NA Intergenic Intergenic 67051 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 300.75 chr10 7824777 7825111 + 1.75 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 6439 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 214-27 chr3 30740697 30740852 + 1.75 NA intron (NM_207359, intron 14 of 14) L1M5|LINE|L1 134173 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 179.75-36 chr3 134808300 134808468 + 1.75 NA intron (NM_004441, intron 1 of 15) MLT1K|LTR|ERVL-MaLR 13124 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 190-41 chr5 157236615 157236754 + 1.75 NA intron (NM_005546, intron 8 of 16) intron (NM_005546, intron 8 of 16) -29439 NM_001291721 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 319-5 chr2 51022709 51023119 + 1.75 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 9218 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 313.5-9 chr20 11490056 11490439 + 1.75 NA Intergenic Intergenic -216864 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 146.25-57 chr5 21604402 21604522 + 1.75 NA Intergenic Intergenic 144982 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 190.75-15 chr11 116057191 116057338 + 1.75 NA Intergenic L1ME3G|LINE|L1 -297064 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 361.25-4 chr8 118243237 118243481 + 1.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -131540 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 305 chr1 165385579 165385813 + 1.75 NA Intergenic Intergenic -28981 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 194.5-25 chr18 6875312 6875529 + 1.75 NA intron (NM_001010000, intron 8 of 16) intron (NM_001010000, intron 8 of 16) 40935 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 350.25-4 chr16 9481347 9481732 + 1.75 NA Intergenic AluSz|SINE|Alu -26034 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 193-47 chr8 11336897 11337099 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL -2639 NR_001578 157739 Hs.583896 NR_001578 ENSG00000154316 TDH SDR14E1P L-threonine dehydrogenase (pseudogene) pseudo 339-4 chr18 10871164 10871483 + 1.75 NA exon (NM_022068, exon 5 of 52) exon (NM_022068, exon 5 of 52) -111674 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 448.75-2 chr7 40445792 40446164 + 1.75 NA intron (NM_024728, intron 9 of 14) MER21B|LTR|ERVL 311002 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 289-7 chr14 62571637 62571935 + 1.75 NA Intergenic Intergenic -431813 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 179.75-53 chr7 20863767 20863882 + 1.75 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 28393 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 336-13 chr3 103598955 103599352 + 1.75 NA Intergenic HERVL-int|LTR|ERVL -75037 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 269.5-5 chr10 89214953 89215179 + 1.75 NA intron (NM_001127605, intron 9 of 9) intron (NM_001127605, intron 9 of 9) -7749 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 300.5-17 chr4 46892223 46892486 + 1.75 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 16891 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 192-2 chr1 157521442 157521697 + 1.75 NA intron (NM_001195388, intron 10 of 16) L1ME3G|LINE|L1 30946 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 246.75-14 chr2 115908286 115908471 + 1.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 564563 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 410.25-2 chr2 181107454 181107727 + 1.75 NA Intergenic Intergenic -16247 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 231.25-34 chr6 77188122 77188367 + 1.75 NA Intergenic L1MA2|LINE|L1 275778 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 272-12 chr17 49601411 49601606 + 1.75 NA intron (NM_001007230, intron 11 of 11) intron (NM_001007230, intron 11 of 11) 25081 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 210-20 chr22 25914398 25914621 + 1.75 NA intron (NM_001318245, intron 33 of 43) L1ME3Cz|LINE|L1 172321 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 257-5 chr15 46477758 46477925 + 1.75 NA Intergenic L1ME1|LINE|L1 -706248 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 226.5-24 chr2 16553877 16554133 + 1.75 NA intron (NM_030797, intron 11 of 11) intron (NM_030797, intron 11 of 11) 111829 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 299.75-2 chr11 14723126 14723364 + 1.75 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 79441 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 283.5-7 chr15 87033474 87033789 + 1.75 NA Intergenic Intergenic -45205 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 248.5-30 chr6 126749767 126750012 + 1.75 NA Intergenic Intergenic 265258 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 162-22 chr2 46817187 46817383 + 1.75 NA non-coding (NR_034099, exon 2 of 4) non-coding (NR_034099, exon 2 of 4) 617 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 160.25-32 chr2 102414202 102414317 + 1.75 NA Intergenic LTR49-int|LTR|ERV1 -4531 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 290.75-2 chr14 21120878 21121240 + 1.75 NA Intergenic Intergenic -16355 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 245-21 chr3 110301455 110301690 + 1.75 NA Intergenic Intergenic 698744 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 295.75-12 chr7 32505620 32505836 + 1.75 NA intron (NM_015060, intron 1 of 15) intron (NM_015060, intron 1 of 15) 10239 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 247.25-3 chr11 24429333 24429489 + 1.75 NA Intergenic Intergenic -67642 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 174.75-41 chr5 22909113 22909300 + 1.75 NA Intergenic L2c|LINE|L2 -55862 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 258.5-15 chr5 42897825 42898066 + 1.75 NA Intergenic Intergenic -85869 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 328.75-4 chr8 142349334 142349659 + 1.75 NA intron (NM_001366903, intron 2 of 9) L1ME3E|LINE|L1 53686 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 229-7 chr10 59345375 59345617 + 1.75 NA intron (NM_001347848, intron 4 of 15) intron (NM_001347848, intron 4 of 15) 17053 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 237.25-21 chr4 54400223 54400702 + 1.75 NA Intergenic Intergenic 67570 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 189-38 chr4 74462261 74462449 + 1.75 NA Intergenic L1M5|LINE|L1 17219 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 218-33 chr4 32898821 32898984 + 1.75 NA Intergenic Intergenic 547864 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 212.5-34 chr3 96607741 96608038 + 1.75 NA Intergenic L1MC1|LINE|L1 -206705 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 176.5-59 chr3 24333853 24334010 + 1.75 NA intron (NM_001252634, intron 2 of 11) intron (NM_001252634, intron 2 of 11) -160156 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 283.5 chr1 91150788 91150999 + 1.75 NA Intergenic L1M3|LINE|L1 -128638 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 221.25-30 chr5 121256923 121257063 + 1.75 NA Intergenic L1ME3A|LINE|L1 -65557 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 333.25 chr11 93943241 93943669 + 1.75 NA Intergenic MER57C2|LTR|ERV1 -77899 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 165.5-44 chr2 35231638 35231829 + 1.75 NA Intergenic Intergenic -239672 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 315.25-11 chr3 105535350 105535694 + 1.75 NA intron (NM_001243280, intron 6 of 14) MIR|SINE|MIR 168613 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 363.75-2 chr11 115014325 115014639 + 1.75 NA Intergenic Intergenic -319095 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 223.5-45 chr20 51873972 51874265 + 1.75 NA Intergenic MIRb|SINE|MIR -11205 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 272-8 chr13 42232426 42232730 + 1.75 NA non-coding (NR_123714, exon 28 of 28) non-coding (NR_123714, exon 28 of 28) -39574 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 168.75-47 chr5 40910888 40910994 + 1.75 NA intron (NM_000587, intron 1 of 17) intron (NM_000587, intron 1 of 17) 1444 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 268.75-21 chr3 67494164 67494378 + 1.75 NA intron (NM_001177599, intron 9 of 10) intron (NM_001177599, intron 9 of 10) 160343 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 222.25-10 chr15 63656344 63656580 + 1.75 NA intron (NM_003922, intron 48 of 77) intron (NM_003922, intron 48 of 77) -55635 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 289.75-11 chr2 54981396 54981719 + 1.75 NA intron (NM_020532, intron 5 of 8) intron (NM_020532, intron 5 of 8) 28715 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 224.25-6 chr11 115001677 115001817 + 1.75 NA Intergenic Intergenic 323220 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 218.25-21 chr15 68067414 68067702 + 1.75 NA intron (NM_001320687, intron 2 of 14) HAL1|LINE|L1 12982 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 214.5-46 chr4 123992180 123992375 + 1.75 NA Intergenic LTR1E|LTR|ERV1 218013 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 159.75-32 chr22 32967277 32967489 + 1.75 NA intron (NM_003490, intron 3 of 13) intron (NM_003490, intron 3 of 13) 39438 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 340.75 chr1 94475573 94475791 + 1.75 NA exon (NM_001122674, exon 7 of 9) exon (NM_001122674, exon 7 of 9) 57293 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 132.75-99 chr8 89099786 89099937 + 1.75 NA Intergenic MIRc|SINE|MIR 657850 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 260-24 chr3 133164359 133164690 + 1.75 NA intron (NM_001282865, intron 1 of 3) MIRc|SINE|MIR 39703 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 199.75-6 chr13 71334943 71335104 + 1.75 NA Intergenic L1MCa|LINE|L1 319882 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 187-34 chr3 4137988 4138262 + 1.75 NA Intergenic L1M4|LINE|L1 -165179 NM_001276325 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 426.25-2 chr5 172305386 172305916 + 1.75 NA Intergenic L1MC4a|LINE|L1 20054 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 227.25-9 chr11 112150002 112150160 + 1.75 NA exon (NM_001562, exon 4 of 6) exon (NM_001562, exon 4 of 6) 14013 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 166-18 chr12 12803466 12803613 + 1.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR -9807 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 404.25-5 chr3 88004056 88004483 + 1.75 NA Intergenic Intergenic 21693 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 183.75-34 chr20 38510208 38510394 + 1.75 NA intron (NM_001282917, intron 6 of 29) AluJo|SINE|Alu -6262 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 267.5-13 chr2 35333236 35333401 + 1.75 NA Intergenic MER101-int|LTR|ERV1 -138087 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 286.75-3 chr18 73078236 73078512 + 1.75 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 186124 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 158.75-20 chr14 47039239 47039386 + 1.75 NA intron (NM_001113498, intron 7 of 16) L2|LINE|L2 303934 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 217.75-40 chr8 126610341 126610525 + 1.75 NA Intergenic MER5A|DNA|hAT-Charlie -51955 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 203.75-36 chr6 48776861 48777291 + 1.75 NA Intergenic Intergenic 686177 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 256.25-14 chr7 18002900 18003082 + 1.75 NA Intergenic Intergenic 24855 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 234.5-7 chr10 123549883 123550030 + 1.75 NA Intergenic MIRc|SINE|MIR -116399 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 193.25-8 chr11 80777029 80777168 + 1.75 NA Intergenic L3|LINE|CR1 -14295 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 180.25-59 chr6 129758080 129758206 + 1.75 NA Intergenic Intergenic -47966 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 366.25 chr10 51851017 51851302 + 1.75 NA intron (NM_001098512, intron 4 of 17) L1MC4a|LINE|L1 -151564 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 278.5-18 chr2 24652612 24652809 + 1.75 NA intron (NM_001362950, intron 4 of 23) intron (NM_001362950, intron 4 of 23) 68233 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 337-4 chr12 84350450 84350846 + 1.75 NA Intergenic Intergenic 562151 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 152.5-44 chr17 31419992 31420081 + 1.75 NA intron (NM_032932, intron 1 of 14) L1ME1|LINE|L1 28361 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 376.25 chr15 34757802 34758402 + 1.75 NA intron (NR_120329, intron 1 of 2) intron (NR_120329, intron 1 of 2) 3018 NR_120329 101928174 Hs.680670 NR_120329 ENSG00000250007 LOC101928174 - uncharacterized LOC101928174 ncRNA 222.5-16 chr14 73943681 73943891 + 1.75 NA intron (NM_152445, intron 3 of 8) intron (NM_152445, intron 3 of 8) -6148 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 290.5-18 chr21 25708604 25708891 + 1.75 NA intron (NR_072999, intron 7 of 9) intron (NR_072999, intron 7 of 9) -26225 NM_002040 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 246-2 chr1 79353566 79353806 + 1.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -346956 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 298-21 chr6 166433388 166433677 + 1.75 NA intron (NM_001006932, intron 15 of 21) intron (NM_001006932, intron 15 of 21) 31851 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 195-30 chr2 196253493 196253661 + 1.75 NA intron (NM_020760, intron 19 of 28) intron (NM_020760, intron 19 of 28) -6447 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 320.5-19 chr8 128176105 128176525 + 1.75 NA Intergenic Intergenic 26199 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 210.5-10 chr11 105249434 105249598 + 1.75 NA Intergenic Intergenic -109747 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 223-35 chr5 83988160 83988313 + 1.75 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -267381 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 342.25-4 chr4 159851055 159851351 + 1.75 NA Intergenic Intergenic -73419 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 326.25-2 chr12 27935404 27935951 + 1.75 NA Intergenic Intergenic 34299 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 288.75-2 chr10 11969755 11970144 + 1.75 NA intron (NM_080599, intron 9 of 21) L2c|LINE|L2 72860 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 194.5-68 chr7 69283800 69283957 + 1.75 NA Intergenic Intergenic 313746 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 147.25-20 chr16 80037221 80037335 + 1.75 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat 242029 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 130-51 chr3 87346899 87347051 + 1.75 NA Intergenic AluSc|SINE|Alu -70391 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 297-12 chr15 43125634 43125876 + 1.75 NA Intergenic Intergenic -7360 NM_001347008 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 196-33 chr5 26909705 26909832 + 1.75 NA intron (NM_016279, intron 3 of 11) intron (NM_016279, intron 3 of 11) 128818 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 382.5-4 chr17 70733087 70733536 + 1.75 NA Intergenic Intergenic 468868 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 304-8 chr8 125056110 125056436 + 1.75 NA intron (NM_014846, intron 16 of 28) intron (NM_014846, intron 16 of 28) 35519 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 176.5-80 chr7 41546149 41546256 + 1.75 NA Intergenic L1MC4a|LINE|L1 -147717 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 157-9 chr11 31729659 31729767 + 1.75 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 70948 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 439.25 chr2 104929938 104930472 + 1.75 NA Intergenic Intergenic -57610 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 208.25-45 chr8 121969886 121970119 + 1.75 NA Intergenic Intergenic -328562 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 236.5-10 chr11 79324304 79324655 + 1.75 NA intron (NM_001098816, intron 1 of 33) AluJr4|SINE|Alu 77630 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 227-26 chr5 145769962 145770140 + 1.75 NA intron (NM_205846, intron 5 of 6) Tigger3b|DNA|TcMar-Tigger 65291 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 285.75-22 chr8 111170578 111170864 + 1.75 NA intron (NR_125418, intron 1 of 3) MLT1H-int|LTR|ERVL-MaLR 65482 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 318-22 chr7 8516237 8516488 + 1.75 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 82753 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 200.5-51 chr4 161391386 161391601 + 1.75 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -631240 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 156-56 chr5 129477607 129477764 + 1.75 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -16996 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 141.25-65 chr6 63308970 63309137 + 1.75 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 10924 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 305-2 chr1 218635184 218635512 + 1.75 NA intron (NR_031644, intron 3 of 6) L1PA16|LINE|L1 125253 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 191-37 chr4 37715029 37715158 + 1.75 NA Intergenic Intergenic -28717 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 371-5 chr2 212083871 212084312 + 1.75 NA intron (NM_001042599, intron 2 of 26) Tigger19a|DNA|TcMar-Tigger 342269 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 240.5-14 chr11 94532826 94533021 + 1.75 NA TTS (NM_001190462) TTS (NM_001190462) -10928 NM_002033 2526 Hs.390420 NM_002033 ENSG00000196371 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 protein-coding 229-27 chr3 108391906 108392117 + 1.75 NA intron (NM_014981, intron 37 of 41) intron (NM_014981, intron 37 of 41) 80226 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 290.25-16 chr9 31523159 31523357 + 1.75 NA Intergenic Intergenic -141768 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 141-65 chr5 143312633 143312792 + 1.75 NA intron (NM_001204264, intron 3 of 8) Tigger5b|DNA|TcMar-Tigger 90571 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 118.5-70 chr3 30720509 30720599 + 1.75 NA Intergenic Intergenic 113953 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 214.75-5 chr10 79031194 79031464 + 1.75 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 36119 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 192.5-54 chr7 145348576 145348713 + 1.75 NA Intergenic Intergenic -512591 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 208.5-61 chr5 92146595 92146768 + 1.75 NA Intergenic Intergenic -763364 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 267.75-4 chr18 68411271 68411621 + 1.75 NA Intergenic L1M5|LINE|L1 303662 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 286.75-4 chr19 29306110 29306424 + 1.75 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -93116 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 172.25-5 chr1 238739297 238739472 + 1.75 NA Intergenic Intergenic -253367 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 411-5 chr3 95552937 95553340 + 1.75 NA Intergenic Intergenic 130055 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 156.75-10 chr10 58358210 58358365 + 1.75 NA intron (NM_003338, intron 1 of 6) intron (NM_003338, intron 1 of 6) 23281 NM_003338 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 166-55 chr7 31805261 31805414 + 1.75 NA intron (NM_001322057, intron 17 of 17) Tigger7|DNA|TcMar-Tigger 118122 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 418.75-2 chr15 76276356 76276804 + 1.75 NA intron (NM_000126, intron 8 of 11) L1MCa|LINE|L1 -16428 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 225.25-25 chr3 122367374 122367692 + 1.75 NA intron (NM_001017928, intron 3 of 4) intron (NM_001017928, intron 3 of 4) 15698 NM_001308326 131076 Hs.220594 NM_001017928 ENSG00000160124 CCDC58 - coiled-coil domain containing 58 protein-coding 144.25-45 chr20 53758167 53758296 + 1.75 NA Intergenic MIR|SINE|MIR 117478 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 309.5-12 chr4 152571959 152572351 + 1.75 NA Intergenic Intergenic 35727 NR_039658 100616193 NR_039658 ENSG00000283792 MIR4453 - microRNA 4453 ncRNA 398.25-3 chr8 100297091 100297372 + 1.75 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) 4962 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 275-5 chr16 11147549 11147793 + 1.75 NA intron (NM_015226, intron 21 of 22) L1MB8|LINE|L1 108511 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 225.75-3 chr1 106613844 106614015 + 1.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -204310 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 274.25-15 chr7 19431222 19431437 + 1.75 NA Intergenic L1MCa|LINE|L1 274107 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 145.5-20 chr12 23244269 23244373 + 1.75 NA Intergenic MSTD-int|LTR|ERVL-MaLR 68685 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 216.75-37 chr5 87781413 87781632 + 1.75 NA Intergenic Intergenic 119480 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 254.5-10 chr16 62315970 62316361 + 1.75 NA Intergenic Intergenic -279727 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 270-24 chr5 39079457 39079681 + 1.75 NA Intergenic AluJr|SINE|Alu -5170 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 198.75-13 chr15 49683058 49683297 + 1.75 NA Intergenic Intergenic 62129 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 240.25-18 chr3 78926683 78927012 + 1.75 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 92612 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 366.25-3 chr5 35672622 35673034 + 1.75 NA intron (NM_024867, intron 10 of 36) intron (NM_024867, intron 10 of 36) 54965 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 345-14 chr9 12403768 12404091 + 1.75 NA Intergenic Intergenic -289456 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 350-4 chr21 26961157 26961425 + 1.75 NA intron (NM_007038, intron 1 of 7) intron (NM_007038, intron 1 of 7) 5797 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 133.75-75 chr8 104247930 104248057 + 1.75 NA intron (NR_145711, intron 18 of 21) L2a|LINE|L2 24658 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 119.75-33 chr16 20846864 20846946 + 1.75 NA intron (NM_030941, intron 19 of 19) intron (NM_030941, intron 19 of 19) 40378 NM_001199053 81691 Hs.177926 NM_030941 ENSG00000005189 REXO5 NEF-sp RNA exonuclease 5 protein-coding 268.5-27 chr5 84708769 84708994 + 1.75 NA Intergenic L1ME4b|LINE|L1 -324001 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 173.25-10 chr11 40953104 40953224 + 1.75 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 506472 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 316.5-5 chr19 36952518 36952925 + 1.75 NA TTS (NM_001204837) TTS (NM_001204837) 36389 NM_001204836 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 246.25-31 chr9 98351686 98351902 + 1.75 NA intron (NM_005458, intron 13 of 18) L1MA5|LINE|L1 -96145 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 420.75-3 chr5 179638259 179638685 + 1.75 NA intron (NR_131066, intron 3 of 5) AluJo|SINE|Alu -3688 NM_001364234 3187 Hs.604001 NM_005520 ENSG00000169045 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 protein-coding 232.25-29 chr9 108985491 108985703 + 1.75 NA intron (NM_003798, intron 4 of 18) Chap1_Mam|DNA|hAT-Charlie 27902 NM_001286974 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 253.25-12 chr17 57802781 57802956 + 1.75 NA Intergenic Intergenic 47176 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 385.5 chr14 64501678 64502157 + 1.75 NA intron (NM_001354686, intron 3 of 5) intron (NM_001354686, intron 3 of 5) -1464 NM_001354684 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 216.25-45 chr8 130117346 130117522 + 1.75 NA intron (NM_001362925, intron 21 of 29) intron (NM_001362925, intron 21 of 29) -32666 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 146.25-8 chr10 18014546 18014655 + 1.75 NA intron (NM_001282734, intron 11 of 11) intron (NM_001282734, intron 11 of 11) -4038 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 221-20 chr2 48568990 48569168 + 1.75 NA 5' UTR (NM_172311, exon 1 of 11) 5' UTR (NM_172311, exon 1 of 11) 301 NM_172311 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 329.5-14 chr8 61615714 61615951 + 1.75 NA intron (NM_004318, intron 14 of 24) intron (NM_004318, intron 14 of 24) 73979 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 326.5-12 chr7 110635773 110636012 + 1.75 NA Intergenic Intergenic -455114 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 396.75-3 chr7 27348713 27349133 + 1.75 NA Intergenic Intergenic -101694 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 173.25-43 chr3 48491872 48492020 + 1.75 NA intron (NM_001272065, intron 2 of 5) MLT-int|LTR|ERVL-MaLR 12104 NM_001272068 51246 Hs.414579 NM_016479 ENSG00000164054 SHISA5 SCOTIN shisa family member 5 protein-coding 275.25-22 chr9 131217995 131218247 + 1.75 NA intron (NM_001318324, intron 31 of 35) intron (NM_001318324, intron 31 of 35) 27982 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 299.75-8 chr6 78877040 78877338 + 1.75 NA intron (NM_001010844, intron 1 of 3) intron (NM_001010844, intron 1 of 3) 9638 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 201.5-10 chr11 105596558 105596684 + 1.75 NA Intergenic Intergenic -13452 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 263.5-28 chr5 115572109 115572279 + 1.75 NA Intergenic MIR|SINE|MIR -27419 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 144.5-88 chr5 52358872 52359030 + 1.75 NA Intergenic L1MA9|LINE|L1 350920 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 254.5-7 chr11 81236173 81236418 + 1.75 NA Intergenic L2a|LINE|L2 -473492 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 437.5 chr14 74743726 74744044 + 1.75 NA Intergenic AluJb|SINE|Alu -19431 NM_019589 56252 Hs.531111 NM_019589 ENSG00000119596 YLPM1 C14orf170|PPP1R169|ZAP113|ZAP3 YLP motif containing 1 protein-coding 150.75-56 chr5 39603363 39603625 + 1.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 83063 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 198-12 chr12 47927627 47927782 + 1.75 NA Intergenic Intergenic -22673 NM_001017535 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 186-38 chr4 175911562 175911723 + 1.75 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 91049 NM_005277 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 234.5-42 chr8 60709458 60709631 + 1.75 NA intron (NM_017780, intron 1 of 37) intron (NM_017780, intron 1 of 37) 30804 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 295.5-17 chr3 110353801 110354137 + 1.75 NA Intergenic Intergenic 715990 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 197.5-69 chrX 70584967 70585123 + 1.75 NA intron (NM_001003811, intron 26 of 30) L1MB4|LINE|L1 -129051 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 299.25-8 chr3 197230012 197230202 + 1.75 NA intron (NM_001366216, intron 4 of 23) intron (NM_001366216, intron 4 of 23) -45976 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 332.75-3 chr12 15596420 15596786 + 1.75 NA 3' UTR (NM_030670, exon 13 of 13) 3' UTR (NM_030670, exon 13 of 13) 49992 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 274.5-26 chr5 19000828 19001283 + 1.75 NA Intergenic Intergenic 885217 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 241.5-26 chr3 161032104 161032324 + 1.75 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 72518 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 249.5-10 chr2 77157499 77157689 + 1.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 171629 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 184.25-27 chr22 24040540 24040673 + 1.75 NA intron (NM_012295, intron 4 of 36) intron (NM_012295, intron 4 of 36) 29236 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 273.5-13 chr2 41168821 41169123 + 1.75 NA Intergenic Intergenic -656537 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 235.75-3 chr1 66898747 66898928 + 1.75 NA intron (NM_024763, intron 2 of 16) L1MB7|LINE|L1 26019 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 205-38 chr6 157050797 157050936 + 1.75 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 14439 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 243-16 chr4 30687279 30687441 + 1.75 NA Intergenic Intergenic -33009 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 160.75-13 chr11 33815693 33815900 + 1.75 NA Intergenic L2|LINE|L2 41097 NR_120550 101928440 Hs.202343 NR_120550 ENSG00000254508 FBXO3-DT FBXO3-AS1 FBXO3 divergent transcript ncRNA 354.5-4 chr4 40337081 40337535 + 1.75 NA exon (NM_017581, exon 3 of 5) exon (NM_017581, exon 3 of 5) 1975 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 284-23 chr9 38738713 38739067 + 1.75 NA Intergenic AluJb|SINE|Alu 117802 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 272-21 chr6 34498328 34498553 + 1.75 NA intron (NM_020804, intron 1 of 9) L1M3|LINE|L1 -16432 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 327.5-8 chr6 22742101 22742334 + 1.75 NA Intergenic Intergenic -24293 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 203.75-2 chr1 72525717 72525937 + 1.75 NA Intergenic Intergenic -243288 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 153.75-69 chr5 153595778 153595937 + 1.75 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 103685 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 186.5-41 chr3 168703424 168703578 + 1.75 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 151647 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 145.75 chr1 167856866 167856957 + 1.75 NA intron (NM_018417, intron 16 of 32) intron (NM_018417, intron 16 of 32) 57223 NM_001297772 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 195-20 chr15 63082975 63083165 + 1.75 NA Intergenic Intergenic -33683 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 315.25-2 chr10 80652821 80653071 + 1.75 NA intron (NR_155749, intron 2 of 2) MER21C|LTR|ERVL 3149 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 121.25-80 chr8 73036647 73036783 + 1.75 NA intron (NM_017489, intron 8 of 9) MER2|DNA|TcMar-Tigger 27851 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 265.25-11 chr12 76716096 76716370 + 1.75 NA Intergenic Intergenic -47841 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 347.5-8 chr15 101332008 101332521 + 1.75 NA intron (NM_002570, intron 13 of 21) intron (NM_002570, intron 13 of 21) -2173 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 217.25-12 chr14 83635170 83635386 + 1.75 NA Intergenic Intergenic 992646 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 279.25-19 chr6 52057909 52058203 + 1.75 NA intron (NM_138694, intron 16 of 66) intron (NM_138694, intron 16 of 66) 29557 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 127-79 chr5 167833566 167833694 + 1.75 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 78701 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 289.25 chr1 18490844 18491160 + 1.75 NA Intergenic Intergenic 10072 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 207-4 chr1 229469600 229469791 + 1.75 NA intron (NM_018230, intron 15 of 25) LTR33|LTR|ERVL -35599 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 366.5 chr1 39604413 39604696 + 1.75 NA Intergenic L1M5|LINE|L1 -27764 NM_001135653 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 208.5-75 chr9 27463564 27463790 + 1.75 NA intron (NM_024761, intron 1 of 3) MIRb|SINE|MIR -60637 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 266-20 chr9 31918726 31918892 + 1.75 NA Intergenic Intergenic -465794 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 230.25-28 chr6 145660093 145660365 + 1.75 NA intron (NM_001368131, intron 2 of 3) intron (NM_001368131, intron 2 of 3) 26648 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 148.75-16 chr13 99767314 99767431 + 1.75 NA intron (NR_120421, intron 3 of 4) L1MA4|LINE|L1 -38371 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 316-19 chr7 82452515 82452844 + 1.75 NA Intergenic Intergenic -8723 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 184-24 chr2 105221762 105221964 + 1.75 NA Intergenic Intergenic -19880 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 278.25-7 chr12 12104746 12105121 + 1.75 NA Intergenic L1MEc|LINE|L1 -7019 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 219.5-50 chr8 73456640 73456869 + 1.75 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 36680 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 189-37 chr3 101880353 101880502 + 1.75 NA Intergenic Intergenic 30913 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 272.75-8 chr14 75018478 75018682 + 1.75 NA intron (NM_014381, intron 11 of 11) intron (NM_014381, intron 11 of 11) 15659 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 238-20 chr2 62819154 62819361 + 1.75 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 112360 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 117-2 chr1 61951143 61951270 + 1.75 NA intron (NM_001350145, intron 27 of 43) intron (NM_001350145, intron 27 of 43) 105131 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 281-14 chr3 20412762 20413110 + 1.75 NA Intergenic Intergenic 70468 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 280-9 chr14 57202184 57202367 + 1.75 NA 3' UTR (NM_006544, exon 18 of 18) 3' UTR (NM_006544, exon 18 of 18) 66630 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 408.5 chr1 117113336 117113633 + 1.75 NA exon (NM_025188, exon 5 of 6) exon (NM_025188, exon 5 of 6) 8265 NM_001145635 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 169.75-9 chr10 117504697 117504882 + 1.75 NA intron (NR_002791, intron 2 of 3) intron (NR_002791, intron 2 of 3) -37656 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 284-17 chr4 121781187 121781380 + 1.75 NA Intergenic AluSc|SINE|Alu -15883 NM_001317842 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 147.25-30 chr2 76413615 76413779 + 1.75 NA Intergenic MER31B|LTR|ERV1 -572268 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 287.25-8 chr2 20175182 20175454 + 1.75 NA Intergenic AluSz6|SINE|Alu 49812 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 269.75-6 chr14 60633926 60634159 + 1.75 NA Intergenic Intergenic -5174 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 218.5-29 chr20 34541388 34541572 + 1.75 NA TTS (NM_014183) TTS (NM_014183) -5364 NM_181509 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 264.5-31 chr9 94011914 94012155 + 1.75 NA Intergenic L2c|LINE|L2 -18779 NM_177995 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 188.25-4 chr10 18787348 18787485 + 1.75 NA Intergenic Intergenic 127985 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 311.25-2 chr10 74944677 74945004 + 1.75 NA intron (NM_001370144, intron 3 of 15) L1ME2|LINE|L1 32054 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 243.5-25 chr6 38935291 38935508 + 1.75 NA intron (NM_001371, intron 75 of 91) intron (NM_001371, intron 75 of 91) 17708 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 347-5 chr4 143049410 143049836 + 1.75 NA Intergenic Intergenic 135238 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 274-3 chr1 147757572 147757739 + 1.75 NA 3' UTR (NM_005266, exon 2 of 2) 3' UTR (NM_005266, exon 2 of 2) 2947 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 413.75-2 chr4 129488178 129488426 + 1.75 NA Intergenic Intergenic 283176 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 202.5-25 chr3 12057323 12057527 + 1.75 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 53034 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 217.25-34 chr8 65391583 65391779 + 1.75 NA Intergenic L1HS|LINE|L1 170985 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 310.5-8 chr20 54651662 54651932 + 1.75 NA TTS (NM_177959) TTS (NM_177959) 176204 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 233.75-24 chr4 33050778 33050942 + 1.75 NA Intergenic Intergenic 699822 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 340-10 chr7 131607354 131607701 + 1.75 NA Intergenic Intergenic -50899 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 182.75-57 chr8 122394842 122394999 + 1.75 NA Intergenic Intergenic 173724 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 274-24 chr5 52342951 52343170 + 1.75 NA Intergenic Intergenic 335029 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 237.75-46 chr9 31633992 31634189 + 1.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -252600 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 156.75-84 chr6 166355384 166355558 + 1.75 NA Intergenic Intergenic 12840 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 285.75-17 chr3 119477435 119477766 + 1.75 NA intron (NM_152305, intron 4 of 10) intron (NM_152305, intron 4 of 10) 8637 NR_024265 56983 Hs.231750 NM_152305 ENSG00000163389 POGLUT1 C3orf9|CLP46|KDELCL1|KTELC1|LGMD2Z|LGMDR21|MDS010|MDSRP|Rumi|hCLP46 protein O-glucosyltransferase 1 protein-coding 165.75-69 chr8 76205478 76205663 + 1.75 NA Intergenic Intergenic -201084 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 353-5 chr7 48407879 48408198 + 1.75 NA intron (NM_152701, intron 39 of 61) L1MA9|LINE|L1 236580 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 276.25-11 chr8 76560434 76560739 + 1.75 NA Intergenic Intergenic -120661 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 321-4 chr2 56399533 56399730 + 1.75 NA Intergenic L1MC1|LINE|L1 -213861 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 291.75-4 chr14 66113746 66113997 + 1.75 NA Intergenic L1ME3|LINE|L1 -372500 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 195.5-91 chr9 27939216 27939422 + 1.75 NA 3' UTR (NM_001258282, exon 7 of 7) 3' UTR (NM_001258282, exon 7 of 7) -365453 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 200.5-47 chr4 6053130 6053387 + 1.75 NA TTS (NM_001306134) TTS (NM_001306134) -34712 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 236.75-3 chr11 74743100 74743291 + 1.75 NA Intergenic L2c|LINE|L2 -5654 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 240.25-15 chr21 16981418 16981645 + 1.75 NA Intergenic Intergenic 391294 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 260.25-17 chr3 101560159 101560437 + 1.75 NA Intergenic Intergenic -1570 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 174.25-47 chr5 94354204 94354364 + 1.75 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -242585 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 231.5-33 chr4 33077391 33077562 + 1.75 NA Intergenic Intergenic 726438 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 414.5-4 chr3 160812834 160813257 + 1.75 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -29104 NM_001317912 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 173-13 chr12 29072383 29072516 + 1.75 NA Intergenic Intergenic -76829 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 219.5-4 chr10 43910065 43910237 + 1.75 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 855 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 167-27 chr18 5551890 5552063 + 1.75 NA intron (NM_001281535, intron 3 of 21) MER5B|DNA|hAT-Charlie -7637 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 277.25-29 chr8 84096305 84096635 + 1.75 NA Intergenic Intergenic -86317 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 158.25-9 chr10 95912246 95912372 + 1.75 NA intron (NM_001349008, intron 2 of 34) intron (NM_001349008, intron 2 of 34) 4344 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 306.25-12 chr9 29518687 29519005 + 1.75 NA Intergenic L1MEc|LINE|L1 -305245 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 210.25-46 chr7 138389456 138389758 + 1.75 NA Intergenic AluSp|SINE|Alu -70652 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 190.75-7 chr10 27593875 27594059 + 1.75 NA Intergenic LTR78B|LTR|ERV1 89663 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 204.75-36 chr5 15860452 15860656 + 1.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -74628 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 223.25-2 chr1 73785251 73785461 + 1.75 NA Intergenic Intergenic 110677 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 181.5-34 chr2 14913801 14913934 + 1.75 NA Intergenic LTR53|LTR|ERVL 281150 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 182.75-54 chr8 82867970 82868197 + 1.75 NA Intergenic Intergenic -44021 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 156.75-4 chr1 158197851 158198020 + 1.75 NA Intergenic L1MA4|LINE|L1 17988 NM_001766 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 262.75-17 chr8 87910964 87911189 + 1.75 NA Intergenic L3|LINE|CR1 -37061 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 213.75-33 chr3 95403682 95403877 + 1.75 NA Intergenic Intergenic 279414 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 136.25-43 chr2 30186257 30186390 + 1.75 NA Intergenic Intergenic -1111 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 153-40 chr4 121769872 121770066 + 1.75 NA Intergenic Intergenic -4569 NM_001317842 132332 Hs.27524 NM_152399 ENSG00000164112 TMEM155 - transmembrane protein 155 protein-coding 246.75-11 chr16 86820566 86820850 + 1.75 NA Intergenic Intergenic 98617 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 137-55 chr4 72525364 72525505 + 1.75 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 43787 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 405.5-2 chr10 126682679 126683051 + 1.75 NA Intergenic Intergenic -12355 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 285.25-20 chr6 57245070 57245316 + 1.75 NA Intergenic MER45R|DNA|hAT-Tip100 18153 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 352-8 chr5 122700109 122700330 + 1.75 NA intron (NR_109881, intron 6 of 11) intron (NR_109881, intron 6 of 11) 30341 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 329.5-10 chr5 159614565 159614884 + 1.75 NA Intergenic LTR82B|LTR|ERVL -148448 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 213.5-52 chr8 142759482 142759809 + 1.75 NA Intergenic Intergenic -7113 NM_205545 137797 Hs.441280 NM_205545 ENSG00000197353 LYPD2 LYPDC2|UNQ430 LY6/PLAUR domain containing 2 protein-coding 166.5-109 chrX 103571956 103572155 + 1.75 NA Intergenic Intergenic -4176 NM_001300901 79921 Hs.194329 NM_024863 ENSG00000133142 TCEAL4 NPD017|WEX7 transcription elongation factor A like 4 protein-coding 292.25-5 chr19 30284457 30284651 + 1.75 NA Intergenic Intergenic -87830 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 280.5-3 chr10 56556965 56557313 + 1.75 NA Intergenic Intergenic -195866 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 242.25-3 chr10 64601567 64601818 + 1.75 NA Intergenic Intergenic -223836 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 222-5 chr10 65397890 65398038 + 1.75 NA Intergenic Intergenic -173461 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 251-2 chr1 173180542 173180939 + 1.75 NA Intergenic Intergenic 24792 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 182.75-55 chr8 87448201 87448328 + 1.75 NA Intergenic Intergenic 425751 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 169.5-57 chr4 55117518 55117636 + 1.75 NA intron (NM_002253, intron 3 of 29) intron (NM_002253, intron 3 of 29) 8018 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 214.75-14 chr16 8378973 8379175 + 1.75 NA Intergenic L2a|LINE|L2 210764 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 181.25-51 chr5 164389494 164389691 + 1.75 NA Intergenic Intergenic 77810 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 220.75-23 chr5 31603002 31603207 + 1.75 NA Intergenic Intergenic -36027 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 237-15 chr18 71238021 71238218 + 1.75 NA Intergenic Intergenic 340837 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 276.75-12 chr2 204019956 204020168 + 1.75 NA Intergenic MIR|SINE|MIR 83314 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 346.5-3 chr10 74716907 74717341 + 1.75 NA Intergenic L1MA8|LINE|L1 -108131 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 154-54 chr5 104987090 104987213 + 1.75 NA Intergenic L1MA1|LINE|L1 -112323 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 275.5-27 chr6 40208153 40208366 + 1.75 NA Intergenic Intergenic 147747 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 136.5-36 chr14 61896807 61897046 + 1.75 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -30769 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 426.5-2 chr14 66738253 66738660 + 1.75 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 231049 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 244.25-4 chr13 75882085 75882242 + 1.75 NA intron (NM_001257995, intron 3 of 3) intron (NM_001257995, intron 3 of 3) 5277 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 295.75-8 chr3 47017799 47017986 + 1.75 NA intron (NR_146158, intron 20 of 21) intron (NR_146158, intron 20 of 21) 6350 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 351-9 chr6 9168181 9168557 + 1.75 NA Intergenic Intergenic 516160 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 230.75-13 chr22 20053742 20053949 + 1.75 NA intron (NM_001322149, intron 5 of 6) intron (NM_001322149, intron 5 of 6) 20706 NR_029706 406961 NR_029706 ENSG00000208023 MIR185 MIRN185|miR-185 microRNA 185 ncRNA 188.75-2 chr1 112877566 112877765 + 1.75 NA Intergenic LTR55|LTR|ERVL? -4385 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 153.75-12 chr11 30963874 30964021 + 1.75 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) 28739 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 336.25-7 chr4 45516877 45517171 + 1.75 NA Intergenic Intergenic 607030 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 221-47 chr8 59945758 59945919 + 1.75 NA Intergenic Intergenic 335562 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 280.5-5 chr12 26998537 26998799 + 1.75 NA intron (NM_016551, intron 3 of 11) L2|LINE|L2 15716 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 207.25-7 chr15 26802694 26802911 + 1.75 NA Intergenic L1MEc|LINE|L1 -29039 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 265.5-28 chrX 98626774 98626977 + 1.75 NA Intergenic FLAM_A|SINE|Alu -1062340 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 250.75-8 chr15 90120640 90120933 + 1.75 NA intron (NR_149130, intron 2 of 2) L1ME3A|LINE|L1 -18232 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 328.75-2 chr2 66286500 66286786 + 1.75 NA Intergenic Intergenic 71685 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 194.5-81 chr9 70194470 70194581 + 1.75 NA intron (NM_153267, intron 11 of 13) MLT1A0|LTR|ERVL-MaLR -18637 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 227.25-16 chr17 60774041 60774231 + 1.75 NA intron (NM_001330413, intron 6 of 25) L1MEc|LINE|L1 96285 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 247.5-43 chr8 116956559 116956954 + 1.75 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 5781 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 396.5-4 chr2 76467839 76468080 + 1.75 NA Intergenic Intergenic -518006 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 202.25-19 chr2 58356977 58357187 + 1.75 NA Intergenic Intergenic 81205 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 319.5-15 chr6 132454639 132454868 + 1.75 NA non-coding (NR_137169, exon 9 of 9) non-coding (NR_137169, exon 9 of 9) -53278 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 131-25 chr18 20969273 20969353 + 1.75 NA intron (NM_005406, intron 23 of 32) intron (NM_005406, intron 23 of 32) 142500 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 170.25-51 chr4 105553458 105553693 + 1.75 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 955 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 199.5-42 chr5 16546170 16546333 + 1.75 NA intron (NM_001034850, intron 3 of 8) AluJr|SINE|Alu -37253 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 230-3 chr10 113706047 113706204 + 1.75 NA intron (NM_001227, intron 2 of 6) intron (NM_001227, intron 2 of 6) -3220 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 351.25-2 chr4 149713992 149714254 + 1.75 NA intron (NM_001363507, intron 5 of 13) L2c|LINE|L2 101720 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 235.75-30 chr9 68820755 68820947 + 1.75 NA intron (NM_003558, intron 3 of 15) intron (NM_003558, intron 3 of 15) 40786 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 299.75-5 chr16 73252001 73252344 + 1.75 NA Intergenic Intergenic -107725 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 289.75-17 chr4 40236752 40236996 + 1.75 NA intron (NM_001278359, intron 2 of 3) intron (NM_001278359, intron 2 of 3) 39843 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 206.25 chr1 76731567 76731722 + 1.75 NA Intergenic Intergenic 47623 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 178.75-4 chr10 93025622 93025727 + 1.75 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -35124 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 354.25-5 chr11 6548383 6548735 + 1.75 NA intron (NM_144666, intron 23 of 42) intron (NM_144666, intron 23 of 42) 51263 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 224.5-29 chr4 59179019 59179228 + 1.75 NA Intergenic LTR26|LTR|ERV1 165550 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 475 chr1 19425361 19425772 + 1.75 NA intron (NM_001206540, intron 1 of 9) intron (NM_001206540, intron 1 of 9) 58729 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 256-19 chr2 190004774 190004984 + 1.75 NA Intergenic Intergenic 57850 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 199.5-63 chrX 41626996 41627288 + 1.75 NA intron (NM_003688, intron 9 of 26) L1ME4a|LINE|L1 -61831 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 270-10 chr16 60907144 60907330 + 1.75 NA Intergenic Intergenic 148529 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 366.75-5 chr20 34681030 34681425 + 1.75 NA Intergenic L1MB8|LINE|L1 -3942 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 226-2 chr10 33383261 33383410 + 1.75 NA Intergenic Intergenic -48430 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 172.75-25 chr21 31758277 31758475 + 1.75 NA Intergenic Intergenic -26258 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 200.5-34 chr2 78748095 78748264 + 1.75 NA Intergenic L1MD|LINE|L1 202648 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 163.75-76 chrX 41573754 41573906 + 1.75 NA intron (NM_003688, intron 15 of 26) L1ME1|LINE|L1 -115143 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 297.5-3 chr19 28697873 28698174 + 1.75 NA intron (NR_110759, intron 5 of 9) L1PA16|LINE|L1 29671 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 239.75-8 chr12 4093301 4093504 + 1.75 NA Intergenic L1MD1|LINE|L1 -180360 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 204.5 chr1 89507957 89508145 + 1.75 NA Intergenic L1MB2|LINE|L1 -16778 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 289.25-3 chr1 114570325 114570621 + 1.75 NA intron (NM_005872, intron 5 of 6) intron (NM_005872, intron 5 of 6) 11142 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 317.5 chr1 45950627 45950812 + 1.75 NA intron (NM_001324321, intron 3 of 28) L1MEd|LINE|L1 86371 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 212-2 chr1 119645152 119645373 + 1.75 NA intron (NM_001080470, intron 1 of 2) intron (NM_001080470, intron 1 of 2) 3004 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 346-7 chr14 84872899 84873287 + 1.75 NA Intergenic Intergenic -398839 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 262.75 chr1 240610277 240610500 + 1.75 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 1767 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 145.5-84 chr6 128808128 128808216 + 1.75 NA Intergenic Intergenic -74966 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 249.25-4 chr14 29057350 29057688 + 1.75 NA Intergenic Intergenic -271732 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 121.75-58 chr3 107242112 107242211 + 1.75 NA intron (NR_028302, intron 1 of 3) L1ME3|LINE|L1 1469 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 214.5-15 chr15 101604012 101604227 + 1.75 NA non-coding (NR_147041, exon 3 of 3) non-coding (NR_147041, exon 3 of 3) 10220 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 196.25-56 chr5 166855109 166855269 + 1.75 NA Intergenic L3|LINE|CR1 71181 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 265.5-19 chr4 29361831 29362076 + 1.75 NA Intergenic L1ME3A|LINE|L1 147661 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 366-3 chr10 98811684 98812093 + 1.75 NA intron (NM_021828, intron 3 of 11) L1M5|LINE|L1 112680 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 295.25-19 chr7 51784113 51784373 + 1.75 NA Intergenic Intergenic -390987 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 201.75-31 chr5 142934952 142935147 + 1.75 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -66139 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 337.5-2 chr15 43037479 43037760 + 1.75 NA intron (NM_174916, intron 17 of 46) intron (NM_174916, intron 17 of 46) 68419 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 332-15 chr8 135230683 135230958 + 1.75 NA Intergenic Intergenic -3311 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 294-9 chr2 197163805 197164160 + 1.75 NA intron (NM_153697, intron 2 of 9) intron (NM_153697, intron 2 of 9) -34009 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 293.5-24 chr9 88382575 88382904 + 1.75 NA Intergenic Intergenic -5705 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 214-38 chr5 152559823 152560100 + 1.75 NA Intergenic AluSz6|SINE|Alu -154682 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 362.5-7 chr5 179542380 179542814 + 1.75 NA intron (NR_131066, intron 3 of 5) AluY|SINE|Alu -7957 NM_025158 80230 Hs.306769 NM_025158 ENSG00000176783 RUFY1 RABIP4|ZFYVE12 RUN and FYVE domain containing 1 protein-coding 153.75-19 chr12 62921191 62921281 + 1.75 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 13914 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 449.5-5 chr7 120479095 120479420 + 1.75 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 206082 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 177.5-66 chr8 91205407 91205531 + 1.75 NA promoter-TSS (NR_039805) promoter-TSS (NR_039805) -16 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 176-16 chr14 34258262 34258437 + 1.75 NA Intergenic MER58B|DNA|hAT-Charlie 203891 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 234.5-29 chr3 189132242 189132484 + 1.75 NA Intergenic Intergenic -39608 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 336.75-10 chr5 39542616 39542888 + 1.75 NA Intergenic Intergenic 22321 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 227.75-12 chr2 194444476 194444733 + 1.75 NA Intergenic Intergenic 100335 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 251.5-7 chr15 86945737 86945944 + 1.75 NA intron (NR_135683, intron 1 of 2) intron (NR_135683, intron 1 of 2) 12960 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 214.25-15 chr15 48855806 48855996 + 1.75 NA intron (NM_203349, intron 8 of 11) intron (NM_203349, intron 8 of 11) -22233 NM_014335 23741 Hs.255973 NM_014335 ENSG00000255302 EID1 C15orf3|CRI1|EID-1|IRO45620|PNAS-22|PTD014|RBP21 EP300 interacting inhibitor of differentiation 1 protein-coding 267.75-15 chr6 70748392 70748584 + 1.75 NA intron (NM_001044305, intron 2 of 10) intron (NM_001044305, intron 2 of 10) 79958 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 225-11 chr14 48322762 48323078 + 1.75 NA Intergenic Intergenic -527906 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 499-2 chr7 77651961 77652337 + 1.75 NA Intergenic MIR|SINE|MIR 44116 NR_134251 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 274.75-2 chr10 133077168 133077422 + 1.75 NA Intergenic Intergenic 9402 NR_111905 100128127 Hs.694139 NR_111905 ADGRA1-AS1 GPR123-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 ncRNA 209.5-23 chr22 24929352 24929540 + 1.75 NA Intergenic Intergenic 17249 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 344.5-6 chr6 117730833 117731134 + 1.75 NA Intergenic L1ME2|LINE|L1 55514 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 259.75-13 chr3 23955102 23955323 + 1.75 NA intron (NM_005126, intron 2 of 7) intron (NM_005126, intron 2 of 7) 9091 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 138.25-36 chr18 66959052 66959214 + 1.75 NA Intergenic Intergenic -122451 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 197.75-35 chr4 37181767 37181962 + 1.75 NA Intergenic Intergenic 60127 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 305-10 chr15 69756533 69757015 + 1.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -78460 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 218.5-25 chr2 126908385 126908525 + 1.75 NA Intergenic HAL1|LINE|L1 9565 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 136-42 chr21 19968305 19968436 + 1.75 NA Intergenic L1ME3A|LINE|L1 -68615 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 374.75-2 chr2 45973639 45973889 + 1.75 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 322089 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 235.75-18 chr3 83151358 83151751 + 1.75 NA Intergenic Intergenic 1165412 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 200.75-31 chr5 29883102 29883298 + 1.75 NA Intergenic Intergenic 2640 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 353.75-8 chr4 104426440 104426788 + 1.75 NA Intergenic Intergenic -64351 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 275.25-16 chr20 7069965 7070162 + 1.75 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 184139 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 172-26 chr20 63024717 63024863 + 1.75 NA intron (NR_033370, intron 1 of 4) intron (NR_033370, intron 1 of 4) 12238 NR_028295 100144596 Hs.187773 NM_022099 LINC00029 C20orf51|NCRNA00029 long intergenic non-protein coding RNA 29 ncRNA 236.5-7 chr10 64225025 64225299 + 1.75 NA Intergenic L1MA5|LINE|L1 -600366 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 212.75-10 chr14 60980322 60980638 + 1.75 NA promoter-TSS (NM_001172702) promoter-TSS (NM_001172702) 599 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 158.25-55 chr5 161276156 161276265 + 1.75 NA Intergenic Intergenic 271914 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 299.5-2 chr1 94519819 94520030 + 1.75 NA Intergenic L1ME3A|LINE|L1 21835 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 298-11 chr18 10074636 10074974 + 1.75 NA Intergenic MIRb|SINE|MIR 160789 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 126-12 chr10 96243974 96244064 + 1.75 NA intron (NM_013314, intron 2 of 16) intron (NM_013314, intron 2 of 16) 27497 NR_047680 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 197.75-14 chr14 70384314 70384526 + 1.75 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -24737 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 183.25-52 chr8 22536589 22536788 + 1.75 NA intron (NM_001243975, intron 12 of 12) intron (NM_001243975, intron 12 of 12) -15239 NM_005775 10174 Hs.528572 NM_005775 ENSG00000120896 SORBS3 SCAM-1|SCAM1|SH3D4 sorbin and SH3 domain containing 3 protein-coding 237-14 chr17 62059319 62059513 + 1.75 NA intron (NM_005121, intron 2 of 29) intron (NM_005121, intron 2 of 29) 5862 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 195-60 chr8 117046288 117046423 + 1.75 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -88640 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 515.75 chr6 142392173 142392639 + 1.75 NA intron (NM_198569, intron 7 of 24) intron (NM_198569, intron 7 of 24) 90399 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 278.5-16 chr17 28138541 28138803 + 1.75 NA intron (NM_016231, intron 3 of 10) intron (NM_016231, intron 3 of 10) -87891 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 197.5-9 chr10 103994310 103994605 + 1.75 NA intron (NM_001304743, intron 4 of 17) intron (NM_001304743, intron 4 of 17) 27317 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 245-23 chr4 30349228 30349399 + 1.75 NA Intergenic MER57B1|LTR|ERV1 -371056 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 292.75-12 chr5 120253479 120253703 + 1.75 NA Intergenic Intergenic -210687 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 221-3 chr1 111086581 111086809 + 1.75 NA Intergenic L1M1|LINE|L1 -52688 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 146-27 chr2 65515059 65515142 + 1.75 NA Intergenic Intergenic -82501 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 310-13 chr21 42000753 42001035 + 1.75 NA intron (NM_020727, intron 1 of 1) intron (NM_020727, intron 1 of 1) -8300 NR_119384 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 315.25-10 chr3 88113082 88113349 + 1.75 NA intron (NM_001350135, intron 3 of 6) intron (NM_001350135, intron 3 of 6) 36651 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 357-8 chr4 70194343 70194817 + 1.75 NA Intergenic Intergenic -1947 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 221.5 chr1 12480607 12481006 + 1.75 NA intron (NM_015378, intron 67 of 69) intron (NM_015378, intron 67 of 69) -26440 NR_003022 677882 Hs.658450 NR_003022 ENSG00000266079 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 360-7 chr4 64278367 64278776 + 1.75 NA 3' UTR (NM_001010874, exon 12 of 12) 3' UTR (NM_001010874, exon 12 of 12) 130879 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 252.25-7 chr15 96954536 96954782 + 1.75 NA Intergenic Intergenic 171224 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 126-19 chr11 128711906 128712053 + 1.75 NA intron (NM_002017, intron 1 of 8) intron (NM_002017, intron 1 of 8) -15956 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA ncRNA 175-22 chr2 51003068 51003253 + 1.75 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 28972 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 343.75-3 chr12 17669287 17669562 + 1.75 NA Intergenic Intergenic -3875 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 196.25-63 chr7 79912437 79912711 + 1.75 NA Intergenic Intergenic -222257 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 321.25-2 chr15 88477692 88478067 + 1.75 NA exon (NM_001321970, exon 6 of 6) exon (NM_001321970, exon 6 of 6) 10171 NR_135917 64963 Hs.111286 NM_022839 ENSG00000181991 MRPS11 HCC-2|MRP-S11|S11mt mitochondrial ribosomal protein S11 protein-coding 302-13 chr2 104141903 104142122 + 1.75 NA Intergenic L1MCb|LINE|L1 266320 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 367.75-3 chr3 131340656 131340980 + 1.75 NA intron (NR_038976, intron 2 of 3) intron (NR_038976, intron 2 of 3) -21027 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 164-51 chr6 44365528 44365630 + 1.75 NA intron (NM_145026, intron 5 of 8) MLT1I|LTR|ERVL-MaLR -22127 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 204-19 chr18 53647801 53647995 + 1.75 NA Intergenic Intergenic -66839 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 210-13 chr17 29980974 29981219 + 1.75 NA intron (NR_026738, intron 4 of 15) L2c|LINE|L2 39462 NR_026738 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 216.75-9 chr10 115717001 115717138 + 1.75 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 477720 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 359.25-6 chr3 160382218 160382488 + 1.75 NA intron (NM_020800, intron 2 of 19) intron (NM_020800, intron 2 of 19) 1413 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 127.25-98 chr8 137296781 137296867 + 1.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 116764 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 196-35 chr5 60032097 60032274 + 1.75 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -138459 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 188-4 chr11 5310026 5310156 + 1.75 NA Intergenic Alu|SINE|Alu -8145 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 343.25-4 chr6 124495029 124495322 + 1.75 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 212170 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 115.5-81 chr6 67768133 67768206 + 1.75 NA Intergenic Intergenic -287182 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 220.5-15 chr13 49038940 49039135 + 1.75 NA intron (NM_001079673, intron 2 of 25) intron (NM_001079673, intron 2 of 25) 62375 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 234-8 chr10 52915857 52916126 + 1.75 NA Intergenic LTR84b|LTR|ERVL -144291 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 289.25-8 chr18 61938851 61939112 + 1.75 NA Intergenic Intergenic -45974 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 196.75-14 chr17 13119000 13119204 + 1.75 NA Intergenic L2c|LINE|L2 -101038 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 337.25-9 chr6 80846498 80846794 + 1.75 NA Intergenic L1M3e|LINE|L1 739975 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 153.25-44 chr5 45869241 45869383 + 1.75 NA Intergenic Intergenic -172932 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 248-17 chr4 53124842 53125230 + 1.75 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 241025 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 175.5-61 chr5 130431745 130431924 + 1.75 NA Intergenic Charlie6|DNA|hAT-Charlie 527369 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 313.75-10 chr8 52285870 52286100 + 1.75 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -31493 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 250.75-21 chr6 63848083 63848273 + 1.75 NA intron (NM_001292009, intron 36 of 43) intron (NM_001292009, intron 36 of 43) 41342 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 295.5-12 chr2 54476928 54477151 + 1.75 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 20712 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 149-41 chr4 20256025 20256116 + 1.75 NA intron (NM_001289135, intron 1 of 35) intron (NM_001289135, intron 1 of 35) 4165 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 193.75-10 chr11 88302789 88302942 + 1.75 NA intron (NM_001814, intron 4 of 6) intron (NM_001814, intron 4 of 6) 34871 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 217.5-7 chr10 61577171 61577453 + 1.75 NA Intergenic L1ME3|LINE|L1 -85617 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 203.25-25 chr18 40605713 40605870 + 1.75 NA Intergenic Intergenic 539505 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 339.75-2 chr1 107468639 107468950 + 1.75 NA intron (NM_001113226, intron 6 of 6) L2c|LINE|L2 219705 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 193-23 chr15 83882918 83883094 + 1.75 NA intron (NM_207517, intron 9 of 29) intron (NM_207517, intron 9 of 29) -197181 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 223.75-12 chr2 70282578 70282739 + 1.75 NA intron (NM_001317166, intron 3 of 3) intron (NM_001317166, intron 3 of 3) 10566 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 431.75 chr3 62607120 62607771 + 1.75 NA intron (NM_003716, intron 6 of 29) intron (NM_003716, intron 6 of 29) -233895 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 348-5 chr2 178798228 178798529 + 1.75 NA intron (NM_133379, intron 6 of 45) intron (NM_133379, intron 6 of 45) 9045 NM_001256850 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 246-26 chr6 127156168 127156536 + 1.75 NA intron (NM_032784, intron 4 of 4) intron (NM_032784, intron 4 of 4) 37681 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 336.75 chr14 59491999 59492319 + 1.75 NA intron (NM_016475, intron 3 of 6) intron (NM_016475, intron 3 of 6) 7642 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 242.5-27 chr3 126320812 126320973 + 1.75 NA Intergenic Intergenic 36516 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 270.75-20 chr5 123289650 123289944 + 1.75 NA Intergenic Intergenic 133795 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 169-34 chr21 27540407 27540528 + 1.75 NA Intergenic L1PB3|LINE|L1 -181912 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 280.5-16 chr2 221636717 221637016 + 1.75 NA Intergenic L1MC5|LINE|L1 -62664 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 142-25 chr19 27922236 27922373 + 1.75 NA intron (NR_146733, intron 2 of 6) MER46C|DNA|TcMar-Tigger -128364 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 139.5-5 chr1 164038599 164038718 + 1.75 NA Intergenic L2b|LINE|L2 -520702 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 240.25-9 chr18 60576333 60576484 + 1.75 NA Intergenic Intergenic -203633 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 353.25 chr1 79172641 79172907 + 1.75 NA Intergenic Intergenic -166044 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 230.5-56 chr8 81969923 81970168 + 1.75 NA Intergenic Intergenic -127759 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 272.75-2 chr1 147438257 147438449 + 1.75 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 79522 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 321.25-6 chr20 43841793 43842152 + 1.75 NA Intergenic MER33|DNA|hAT-Charlie -52746 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 177.25-14 chr18 2705507 2705733 + 1.75 NA intron (NM_015295, intron 13 of 47) intron (NM_015295, intron 13 of 47) 49733 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 153.5-69 chr4 32024150 32024270 + 1.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -1788 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 217.5-28 chr3 23132860 23133062 + 1.75 NA Intergenic L1ME3|LINE|L1 69617 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 225.25-27 chr5 72457284 72457489 + 1.75 NA intron (NM_152625, intron 2 of 4) intron (NM_152625, intron 2 of 4) 50024 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 380.75-7 chr6 53086390 53086762 + 1.75 NA intron (NM_033481, intron 7 of 12) MER101-int|LTR|ERV1 15603 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 231-9 chr12 4422069 4422264 + 1.75 NA Intergenic Intergenic 23448 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 123-29 chr17 61918819 61918901 + 1.75 NA intron (NM_001351695, intron 5 of 24) intron (NM_001351695, intron 5 of 24) 9122 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 181.5-53 chr5 37022353 37022641 + 1.75 NA intron (NM_015384, intron 29 of 45) intron (NM_015384, intron 29 of 45) 145728 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 289.75-15 chr3 12124006 12124261 + 1.75 NA intron (NM_133625, intron 1 of 12) L1MEd|LINE|L1 34779 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 183.75-58 chr8 124838972 124839146 + 1.75 NA Intergenic Intergenic -17001 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 197-30 chr2 198217568 198217707 + 1.75 NA Intergenic Ricksha|DNA|MULE-MuDR 157460 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 294.75-5 chr12 55661820 55662044 + 1.75 NA Intergenic (TTTTTTAT)n|Simple_repeat|Simple_repeat -19804 NM_152637 196410 Hs.51483 NM_152637 ENSG00000170439 METTL7B ALDI methyltransferase like 7B protein-coding 255.5-18 chr3 7329645 7329924 + 1.75 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 205500 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 244.75-27 chr8 136871478 136871672 + 1.75 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 340777 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 244.75-21 chr5 156981947 156982167 + 1.75 NA Intergenic Intergenic -18831 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 329.75-8 chr6 110793083 110793304 + 1.75 NA intron (NM_001300963, intron 1 of 13) intron (NM_001300963, intron 1 of 13) -21428 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 181-30 chr2 57718375 57718539 + 1.75 NA Intergenic Intergenic -189194 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 222.25-6 chr11 11912875 11913047 + 1.75 NA intron (NM_001282659, intron 8 of 27) L1MD2|LINE|L1 71538 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 275.5-29 chr6 145797118 145797310 + 1.75 NA 3' UTR (NM_032145, exon 3 of 3) 3' UTR (NM_032145, exon 3 of 3) 17581 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 290.75-5 chr2 58931229 58931600 + 1.75 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -286294 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 316-18 chr7 6640968 6641346 + 1.75 NA intron (NM_001278559, intron 3 of 8) intron (NM_001278559, intron 3 of 8) 3839 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 230.5-32 chr3 101701686 101701820 + 1.75 NA Intergenic MER45C|DNA|hAT-Tip100 -10681 NR_002941 285359 Hs.720825 NR_002941 PDCL3P4 - PDCL3 pseudogene 4 pseudo 298.5-9 chr15 70336367 70336745 + 1.75 NA Intergenic Intergenic 169372 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 257.75-8 chr14 92420934 92421204 + 1.75 NA intron (NM_153647, intron 3 of 17) intron (NM_153647, intron 3 of 17) -92712 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 359.25 chr10 48335535 48335825 + 1.75 NA intron (NM_001323302, intron 3 of 13) Charlie1a|DNA|hAT-Charlie 29003 NR_136583 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 268.75-11 chr17 11454732 11454956 + 1.75 NA intron (NM_001173462, intron 3 of 4) L2a|LINE|L2 -143626 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 296.5-13 chr17 61476389 61476721 + 1.75 NA intron (NM_001321120, intron 5 of 8) intron (NM_001321120, intron 5 of 8) 20067 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 253-18 chr3 81219078 81219342 + 1.75 NA Intergenic Intergenic 225342 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 231.25-21 chr2 101674687 101674949 + 1.75 NA Intergenic Intergenic -22885 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 350.25-8 chr3 70383180 70383447 + 1.75 NA Intergenic Intergenic -70675 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 117-89 chr9 105219253 105219364 + 1.75 NA Intergenic Intergenic -25297 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 297.25-8 chr12 73229337 73229565 + 1.75 NA Intergenic L1M5|LINE|L1 70261 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 245.75-16 chr6 158352890 158353075 + 1.75 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 30000 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 191.75-11 chr14 42898564 42898723 + 1.75 NA Intergenic L1PA16|LINE|L1 1291787 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 316-11 chr2 185603962 185604265 + 1.75 NA Intergenic Intergenic 134606 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 204-12 chr14 42583511 42583728 + 1.75 NA Intergenic L1PA15|LINE|L1 976763 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 141-12 chr10 118555220 118555330 + 1.75 NA Intergenic L1ME3|LINE|L1 40373 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 239-22 chr20 3584957 3585203 + 1.75 NA intron (NM_001207047, intron 18 of 24) LTR86B2|LTR|ERVL 78319 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 251 chr1 106255522 106255758 + 1.75 NA Intergenic Intergenic -227387 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 126.75-35 chr17 71167985 71168093 + 1.75 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 34140 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 258.75-18 chr2 162870388 162870552 + 1.75 NA Intergenic L1MA2|LINE|L1 -31703 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 353.5-3 chr16 77201677 77202086 + 1.75 NA 3' UTR (NM_001286639, exon 5 of 5) 3' UTR (NM_001286639, exon 5 of 5) 2473 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 313.25-5 chr8 49881730 49881968 + 1.75 NA Intergenic L1M4a2|LINE|L1 -27947 NM_001287813 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 166.5-18 chr10 64589679 64589796 + 1.75 NA Intergenic Intergenic -235791 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 197.75-53 chr9 27971132 27971456 + 1.75 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -397428 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 266.5-11 chr15 93838254 93838560 + 1.75 NA Intergenic Intergenic -18153 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 274-7 chr14 65608835 65609076 + 1.75 NA intron (NM_178156, intron 2 of 9) L1M4|LINE|L1 137853 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 363.75-6 chr5 78051636 78051932 + 1.75 NA intron (NM_003664, intron 22 of 26) intron (NM_003664, intron 22 of 26) 93537 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 260.75-12 chr20 50928263 50928435 + 1.75 NA intron (NM_001347511, intron 1 of 4) intron (NM_001347511, intron 1 of 4) -2635 NR_110008 101927631 Hs.301898 NR_110007 ENSG00000259456 ADNP-AS1 - ADNP antisense RNA 1 ncRNA 214.25-27 chr3 81303756 81304071 + 1.75 NA Intergenic Intergenic 310045 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 490.5-2 chr8 131054877 131055190 + 1.75 NA Intergenic Intergenic -14124 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 232.25-14 chr2 36612461 36612750 + 1.75 NA Intergenic Intergenic -14437 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 246.25-7 chr14 82812047 82812342 + 1.75 NA Intergenic Intergenic 169562 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 143.75-13 chr10 73933541 73933675 + 1.75 NA Intergenic Intergenic -10831 NR_160938 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 279.75-3 chr10 47001168 47001400 + 1.75 NA non-coding (NR_148022, exon 3 of 3) non-coding (NR_148022, exon 3 of 3) 89562 NR_148024 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 135.5-70 chr22 33935285 33935465 + 1.75 NA Intergenic Intergenic -12487 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 252.5-25 chr3 121700345 121700559 + 1.75 NA intron (NM_001256486, intron 11 of 21) intron (NM_001256486, intron 11 of 21) -39549 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 308-9 chr22 27510988 27511230 + 1.75 NA Intergenic Intergenic 200458 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 171.75-46 chr6 12087039 12087168 + 1.75 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 74791 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 208.5-71 chr7 132694567 132694730 + 1.75 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) 45854 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 178.25-8 chr10 18685675 18685868 + 1.75 NA Intergenic Intergenic 26340 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 123-35 chr3 34776216 34776321 + 1.75 NA Intergenic Intergenic 617755 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 322.25-3 chr10 69622026 69622382 + 1.75 NA Intergenic L1ME3B|LINE|L1 -8043 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 313-8 chr18 6846028 6846297 + 1.75 NA intron (NM_001010000, intron 2 of 16) intron (NM_001010000, intron 2 of 16) 11677 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 195.25-4 chr1 184957635 184957838 + 1.75 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 16772 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 202.5-41 chr5 45262926 45263179 + 1.75 NA intron (NM_021072, intron 7 of 7) intron (NM_021072, intron 7 of 7) 433328 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 144-39 chr21 18225874 18226003 + 1.75 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -18895 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 133.5-113 chr8 67978561 67978665 + 1.75 NA intron (NM_024870, intron 1 of 39) L1ME3A|LINE|L1 26567 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 197-51 chr9 22123837 22124107 + 1.75 NA Intergenic Intergenic -114659 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 242.5-37 chr8 121074592 121074844 + 1.75 NA Intergenic HERV16-int|LTR|ERVL -262672 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 245.5-38 chr8 140135547 140135775 + 1.75 NA intron (NM_001160372, intron 17 of 22) L1MB4|LINE|L1 -35126 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 222.25-34 chr9 127312539 127312896 + 1.75 NA intron (NR_104591, intron 3 of 26) intron (NR_104591, intron 3 of 26) 47943 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 122-67 chr6 87707024 87707143 + 1.75 NA Intergenic Intergenic -4850 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 266.25-7 chr15 44125387 44125596 + 1.75 NA intron (NM_001286490, intron 1 of 15) Plat_L3|LINE|CR1 68955 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 313-5 chr12 128386279 128386606 + 1.75 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 92350 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 171.5-39 chr2 36031716 36031862 + 1.75 NA Intergenic Intergenic 323781 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 209.75-10 chr14 55927813 55928045 + 1.75 NA Intergenic Intergenic -131255 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 217.5-38 chr6 127205612 127205771 + 1.75 NA Intergenic Intergenic -60991 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 390.25-4 chr8 16513265 16513667 + 1.75 NA Intergenic L2c|LINE|L2 -320675 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 262.5-12 chr17 56603995 56604257 + 1.75 NA Intergenic Intergenic 10427 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 168.25-25 chr17 59038093 59038358 + 1.75 NA intron (NR_148346, intron 17 of 23) L1MC3|LINE|L1 68655 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 491.5-2 chr6 127238699 127239098 + 1.75 NA Intergenic L1MEc|LINE|L1 -27784 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 230.25-8 chr17 61281550 61281746 + 1.75 NA intron (NM_001330413, intron 23 of 25) L1ME4b|LINE|L1 86056 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 312.25-2 chr12 5352877 5353071 + 1.75 NA Intergenic L1MB7|LINE|L1 -79134 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 315.75-7 chr4 57572139 57572397 + 1.75 NA Intergenic MSTD|LTR|ERVL-MaLR 146396 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 161.75-24 chr2 17800698 17800812 + 1.75 NA Intergenic Intergenic -15705 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 174.5-67 chr4 124329651 124329838 + 1.75 NA Intergenic Intergenic 228690 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 168.25-3 chr1 222596139 222596287 + 1.75 NA Intergenic L1MEf|LINE|L1 6254 NR_110614 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 248.25-21 chr22 34857652 34857859 + 1.75 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 140161 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 160-16 chr2 19256453 19256581 + 1.75 NA Intergenic Intergenic -91912 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 187.25-14 chr11 26576152 26576280 + 1.75 NA intron (NM_031418, intron 14 of 26) MIRb|SINE|MIR -3953 NM_001135092 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 148-34 chr2 55159803 55159924 + 1.75 NA Intergenic Intergenic -22032 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 207.75-19 chr18 47512504 47512635 + 1.75 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 132073 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 199-45 chr7 52426449 52426614 + 1.75 NA Intergenic Intergenic -609102 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 187.25-6 chr1 171420621 171420783 + 1.75 NA Intergenic AluSz6|SINE|Alu -64828 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 203.75-19 chr19 47189857 47190080 + 1.75 NA intron (NM_001145713, intron 6 of 6) intron (NM_001145713, intron 6 of 6) -36974 NR_036158 100422899 NR_036158 ENSG00000265134 MIR3190 mir-3190 microRNA 3190 ncRNA 190.25-43 chr5 28714772 28714929 + 1.75 NA Intergenic Intergenic -212020 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 155.5-41 chr17 20171946 20172062 + 1.75 NA intron (NM_001033554, intron 1 of 5) intron (NM_001033554, intron 1 of 5) 15932 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 434-4 chr6 68586934 68587416 + 1.75 NA Intergenic L1MA7|LINE|L1 47149 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 244.75-4 chr1 232073453 232073661 + 1.75 NA Intergenic L1MEc|LINE|L1 147723 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 127-12 chr10 50309804 50309927 + 1.75 NA intron (NM_147156, intron 9 of 10) L2c|LINE|L2 -61255 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 503.25-3 chr6 153054346 153054739 + 1.75 NA intron (NM_012419, intron 1 of 4) AluSx1|SINE|Alu -51727 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 256-15 chr2 58335335 58335652 + 1.75 NA Intergenic L1MA10|LINE|L1 59616 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 257.5-20 chr3 147767597 147767871 + 1.75 NA Intergenic Intergenic -310425 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 203-2 chr1 160435438 160435650 + 1.75 NA Intergenic MamGypsy2-I|LTR|Gypsy 34980 NM_020335 57216 Hs.99477 NM_020335 ENSG00000162738 VANGL2 LPP1|LTAP|STB1|STBM|STBM1 VANGL planar cell polarity protein 2 protein-coding 239-31 chr8 90539118 90539260 + 1.75 NA Intergenic Intergenic 66874 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 390-7 chr9 35227010 35227382 + 1.75 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 65187 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 243.75-26 chr6 73533267 73533466 + 1.75 NA Intergenic MIR|SINE|MIR -12334 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 262.75-9 chr16 79198488 79198650 + 1.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 402168 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 216.75-17 chr15 89820100 89820337 + 1.75 NA Intergenic L1MC5a|LINE|L1 -5366 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 239.5-17 chr4 40531459 40531675 + 1.75 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) -15582 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 297.75-5 chr11 123069669 123070019 + 1.75 NA TTS (NM_024769) TTS (NM_024769) -7708 NM_153201 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 256-18 chr2 85375185 85375405 + 1.75 NA intron (NM_001135021, intron 11 of 14) L1MDa|LINE|L1 20526 NM_001135021 84173 Hs.269990 NM_032213 ENSG00000115459 ELMOD3 DFNB88|LST3|RBED1|RBM29 ELMO domain containing 3 protein-coding 200.5-45 chr3 102316759 102316900 + 1.75 NA Intergenic L1ME3Cz|LINE|L1 -118186 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 285.25-19 chr6 13727557 13727953 + 1.75 NA Intergenic Intergenic -15920 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 237-19 chr2 128639946 128640116 + 1.75 NA Intergenic Intergenic -224569 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 302.5-11 chr3 126572229 126572590 + 1.75 NA Intergenic Intergenic -13477 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 312.75-3 chr11 41934850 41935135 + 1.75 NA Intergenic L1MA10|LINE|L1 150466 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 202.5-28 chr3 47700965 47701239 + 1.75 NA intron (NM_003074, intron 11 of 27) intron (NM_003074, intron 11 of 27) -39408 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 330-6 chr2 190264408 190264611 + 1.75 NA intron (NM_198047, intron 6 of 12) L1ME3A|LINE|L1 55317 NM_198047 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 306.25 chr1 165395670 165395892 + 1.75 NA Intergenic Intergenic 29203 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 381.25-2 chr21 15215034 15215415 + 1.75 NA Intergenic Intergenic -150224 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 281-5 chr12 44590176 44590459 + 1.75 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 285344 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 329.5-2 chr11 47558350 47558661 + 1.75 NA Intergenic L1MCa|LINE|L1 -5373 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 366-11 chr5 152820915 152821238 + 1.75 NA intron (NR_109877, intron 2 of 4) L1MD1|LINE|L1 151273 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 307.5-14 chr6 71328156 71328437 + 1.75 NA Intergenic Intergenic 39485 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 208.25-39 chr7 23184478 23184688 + 1.75 NA intron (NM_001370446, intron 1 of 7) intron (NM_001370446, intron 1 of 7) 2535 NM_001370444 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 291.25-14 chr22 34775198 34775408 + 1.75 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 222613 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 154-3 chr1 224731285 224731389 + 1.75 NA intron (NM_001322303, intron 4 of 5) MER94B|DNA|hAT-Blackjack 115020 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 323.25-8 chr21 23166997 23167282 + 1.75 NA Intergenic Intergenic 87855 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 250.25-6 chr18 22897513 22897695 + 1.75 NA Intergenic Charlie7|DNA|hAT-Charlie -35724 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 214.75-10 chr14 36402619 36402850 + 1.75 NA Intergenic Intergenic -82058 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 216.75-28 chr3 45227779 45227946 + 1.75 NA Intergenic Intergenic -1575 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 241.25-8 chr17 80828800 80829009 + 1.75 NA intron (NM_020761, intron 9 of 33) L1ME4a|LINE|L1 -23272 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 306-16 chr2 163792538 163792909 + 1.75 NA Intergenic Intergenic -56715 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 292.25-3 chr16 48979054 48979290 + 1.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 302666 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 291-17 chr8 130686382 130686596 + 1.75 NA Intergenic Intergenic -242815 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 206.75-11 chr14 78046077 78046351 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -124159 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 162-47 chr5 38031933 38032046 + 1.75 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 6292 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 228.25-36 chr8 54916020 54916228 + 1.75 NA Intergenic Intergenic -185904 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 354-7 chr2 133626266 133626706 + 1.75 NA Intergenic L1MC5|LINE|L1 -58023 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 210.25-35 chr5 40037341 40037467 + 1.75 NA Intergenic Intergenic -14887 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 161.25-26 chr15 58188115 58188300 + 1.75 NA Intergenic Intergenic 49826 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 377.5-7 chr7 114688661 114689037 + 1.75 NA intron (NR_033767, intron 17 of 17) intron (NR_033767, intron 17 of 17) 35504 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 222.5-24 chr2 19948128 19948287 + 1.75 NA exon (NM_020779, exon 14 of 27) exon (NM_020779, exon 14 of 27) 41898 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 257.25-2 chr1 85404753 85405040 + 1.75 NA promoter-TSS (NM_001330655) promoter-TSS (NM_001330655) -390 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 319.25-7 chr9 30772444 30772718 + 1.75 NA Intergenic Intergenic -364127 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 394.5-2 chr17 76781108 76781493 + 1.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -17744 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 175.25-50 chr6 147804702 147804849 + 1.75 NA Intergenic Intergenic 296085 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 223.5-56 chr4 53314086 53314255 + 1.75 NA intron (NM_152540, intron 2 of 8) intron (NM_152540, intron 2 of 8) 51891 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 223.25-29 chr8 71535248 71535399 + 1.75 NA intron (NM_001370335, intron 2 of 20) intron (NM_001370335, intron 2 of 20) 12381 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 190-30 chr2 211886518 211886655 + 1.75 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 539774 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 354 chr1 171539733 171540035 + 1.75 NA intron (NM_015172, intron 15 of 33) intron (NM_015172, intron 15 of 33) 54354 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 337.75-8 chr3 31992215 31992617 + 1.75 NA TTS (NM_001137674) TTS (NM_001137674) -10566 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 187.25-22 chr15 55371264 55371440 + 1.75 NA intron (NM_001204450, intron 6 of 8) intron (NM_001204450, intron 6 of 8) 1682 NR_030358 693213 NR_030358 ENSG00000283891 MIR628 MIRN628|hsa-mir-628|mir-628 microRNA 628 ncRNA 302.25-3 chr12 62542042 62542398 + 1.75 NA intron (NM_001278469, intron 19 of 35) Tigger10|DNA|TcMar-Tigger 61214 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 309.75-3 chr10 97212676 97212998 + 1.75 NA intron (NR_037909, intron 11 of 14) AluSx|SINE|Alu -26878 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 187-11 chr16 21938388 21938532 + 1.75 NA Intergenic Intergenic -14901 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein 2 protein-coding 581.75 chr2 215380985 215381647 + 1.75 NA intron (NM_212482, intron 32 of 45) intron (NM_212482, intron 32 of 45) 54752 NM_001365521 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 260.75-11 chr2 69276629 69276819 + 1.75 NA Intergenic HAL1|LINE|L1 110503 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 244.5-27 chr4 63995705 63995918 + 1.75 NA Intergenic Intergenic 413639 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 193.75-16 chr15 93202872 93203178 + 1.75 NA Intergenic Intergenic -3041 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 187.5-48 chr21 30495454 30495621 + 1.75 NA Intergenic L1ME3|LINE|L1 1628 NM_181610 337971 Hs.553693 NM_181610 ENSG00000186967 KRTAP19-4 KAP19.4 keratin associated protein 19-4 protein-coding 246.75-15 chr2 122376688 122376945 + 1.75 NA Intergenic Intergenic 621165 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 218.75-10 chr12 940033 940270 + 1.75 NA intron (NR_123713, intron 1 of 13) L1MB7|LINE|L1 -7075 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 281-19 chr4 125957038 125957248 + 1.75 NA Intergenic LTR33|LTR|ERVL 449884 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 305-21 chr7 34453790 34454052 + 1.75 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -204297 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 247.5-25 chr4 171149398 171149549 + 1.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -36711 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 216-31 chr5 95651174 95651320 + 1.75 NA TTS (NR_125327) TTS (NR_125327) 4368 NM_001131065 317671 Hs.399758 NM_173362 ENSG00000175449 RFESD - Rieske Fe-S domain containing protein-coding 220.5-43 chr7 83528921 83529232 + 1.75 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 112355 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 218.25-28 chr2 174194215 174194358 + 1.75 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 54246 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 290.25-15 chr8 121494960 121495245 + 1.75 NA Intergenic Intergenic -144244 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 146.5-35 chr16 12728938 12729115 + 1.75 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) 8705 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 295.75-11 chr4 33710498 33710840 + 1.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 329224 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 210-7 chr12 8947629 8947851 + 1.75 NA intron (NM_002355, intron 1 of 6) intron (NM_002355, intron 1 of 6) 1905 NM_002355 4074 Hs.134084 NM_002355 ENSG00000003056 M6PR CD-M6PR|CD-MPR|MPR 46|MPR-46|MPR46|SMPR mannose-6-phosphate receptor, cation dependent protein-coding 262-9 chr10 129270419 129270842 + 1.75 NA Intergenic Intergenic -196611 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 209.75-38 chr6 83996844 83997016 + 1.75 NA Intergenic L1ME1|LINE|L1 -36842 NM_138409 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 121.5-11 chr10 23477491 23477603 + 1.75 NA Intergenic MER97a|DNA|hAT-Tip100 38278 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 188.75-56 chr9 82175800 82175907 + 1.75 NA Intergenic L1MC1|LINE|L1 187081 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 198.5-40 chr5 56446599 56446745 + 1.75 NA Intergenic Intergenic 35097 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 346.75-8 chr8 88038244 88038536 + 1.75 NA 3' UTR (NM_005941, exon 10 of 10) 3' UTR (NM_005941, exon 10 of 10) -164375 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 144.5-73 chr3 76079111 76079210 + 1.75 NA Intergenic L1MA4|LINE|L1 -293611 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 361.75 chr11 74020946 74021280 + 1.75 NA intron (NM_001286577, intron 32 of 32) L2|LINE|L2 -11876 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 177.75-64 chr8 134121839 134122025 + 1.75 NA Intergenic L1MC|LINE|L1 235436 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 245.75-3 chr10 43475898 43476191 + 1.75 NA intron (NM_001355447, intron 2 of 2) intron (NM_001355447, intron 2 of 2) 38933 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 334-4 chr2 178671968 178672204 + 1.75 NA exon (NM_001267550, exon 155 of 363) exon (NM_001267550, exon 155 of 363) -104840 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 125-78 chr5 22816554 22816625 + 1.75 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 36755 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 207.5-52 chr6 118391035 118391244 + 1.75 NA Intergenic Intergenic -110234 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 315-8 chr18 25919923 25920128 + 1.75 NA Intergenic Intergenic 170588 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 282.5-2 chr1 89939180 89939406 + 1.75 NA Intergenic Intergenic 55673 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 265.5-13 chr17 82027131 82027442 + 1.75 NA intron (NM_144999, intron 6 of 16) intron (NM_144999, intron 6 of 16) 3981 NM_144999 201255 Hs.143774 NM_144999 ENSG00000169683 LRRC45 - leucine rich repeat containing 45 protein-coding 318.5-4 chr11 42198361 42198648 + 1.75 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 55186 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 456.5 chr2 86557340 86557853 + 1.75 NA intron (NM_001198954, intron 3 of 7) L2c|LINE|L2 5847 NR_036454 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 275.5-6 chr11 35380421 35380650 + 1.75 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 39023 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 272.5-20 chr6 68908239 68908514 + 1.75 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 273094 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 176.25-54 chr5 92151096 92151196 + 1.75 NA Intergenic LFSINE_Vert|SINE|tRNA -767829 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 166.75-16 chr14 42321661 42321801 + 1.75 NA Intergenic MER66-int|LTR|ERV1 714875 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 250.25-3 chr12 50672917 50673089 + 1.75 NA intron (NM_173602, intron 5 of 37) L1ME4a|LINE|L1 -91098 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 231-34 chr7 9772225 9772458 + 1.75 NA Intergenic L1MA4|LINE|L1 138071 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 210-45 chr8 134648350 134648580 + 1.75 NA intron (NM_020863, intron 2 of 15) L1MB5|LINE|L1 48090 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 335.25-15 chr8 83033186 83033455 + 1.75 NA Intergenic L1MC2|LINE|L1 121216 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 318.25-3 chr3 89784518 89784808 + 1.75 NA Intergenic Intergenic 677042 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 375.75 chr1 191477794 191478237 + 1.75 NA Intergenic Intergenic -249517 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 214.75-27 chr4 43610745 43610893 + 1.75 NA Intergenic Intergenic -118276 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 169.25-27 chr2 23778840 23779054 + 1.75 NA intron (NR_125717, intron 23 of 28) intron (NR_125717, intron 23 of 28) 148176 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 352-6 chr4 133795483 133795883 + 1.75 NA Intergenic Intergenic 406106 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 324.75-2 chr11 94104607 94105001 + 1.75 NA intron (NM_001098672, intron 16 of 19) intron (NM_001098672, intron 16 of 19) -24037 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 368.5 chr1 102121013 102121406 + 1.75 NA Intergenic L1M2|LINE|L1 -123975 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 254.75-4 chr10 56816101 56816279 + 1.75 NA Intergenic Intergenic -454917 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 319.5-18 chr8 100483672 100484061 + 1.75 NA Intergenic THE1C|LTR|ERVL-MaLR 75893 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 150.5-60 chr3 121542163 121542300 + 1.75 NA intron (NM_199420, intron 2 of 29) intron (NM_199420, intron 2 of 29) 3757 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 208.5-49 chr3 76915860 76916012 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -124163 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 191.75-40 chr7 93565940 93566066 + 1.75 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -6193 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 424-4 chr5 180748595 180749161 + 1.75 NA Intergenic Intergenic -8820 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 301.5-7 chr15 101340517 101340729 + 1.75 NA intron (NM_002570, intron 13 of 21) HAL1|LINE|L1 6186 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 231.25-23 chr22 48419584 48419726 + 1.75 NA Intergenic Intergenic -69898 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 213-39 chr6 81836836 81837035 + 1.75 NA Intergenic Intergenic -22743 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 223.25-18 chr3 30456448 30456586 + 1.75 NA Intergenic L2c|LINE|L2 -62351 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 337-11 chr5 127924509 127924728 + 1.75 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 158557 NR_152801 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 187.25-48 chr5 9689649 9689812 + 1.75 NA intron (NR_027112, intron 9 of 12) Charlie2a|DNA|hAT-Charlie -59379 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 401-5 chr3 43241643 43242093 + 1.75 NA Intergenic L1MB7|LINE|L1 -44644 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 149.75-11 chr12 61050079 61050205 + 1.75 NA Intergenic Intergenic 1142697 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 178.75-28 chr2 101125717 101125846 + 1.75 NA intron (NM_001102426, intron 1 of 19) intron (NM_001102426, intron 1 of 19) 25666 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 241.5-40 chr9 76695921 76696167 + 1.75 NA intron (NM_001308048, intron 9 of 17) MER20|DNA|hAT-Charlie -3629 NM_001330680 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 207-37 chr3 112003184 112003331 + 1.75 NA intron (NM_001008272, intron 3 of 4) intron (NM_001008272, intron 3 of 4) 4097 NM_001008273 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 305.75-5 chr14 75050196 75050518 + 1.75 NA intron (NM_014381, intron 1 of 11) HAL1ME|LINE|L1 1110 NM_014381 27030 Hs.436650 NM_014381 ENSG00000119684 MLH3 HNPCC7 mutL homolog 3 protein-coding 227-36 chr8 109006939 109007118 + 1.75 NA Intergenic Intergenic -79600 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 117-34 chr2 17733682 17733752 + 1.75 NA intron (NM_024624, intron 4 of 26) intron (NM_024624, intron 4 of 26) 20093 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 194-29 chr5 4321613 4321762 + 1.75 NA Intergenic L1MA6|LINE|L1 -451794 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 192.5-60 chr8 130600450 130600569 + 1.75 NA Intergenic MER5A|DNA|hAT-Charlie -156835 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 204.5-70 chr9 74609497 74609746 + 1.75 NA intron (NM_006914, intron 1 of 9) MIR|SINE|MIR -5913 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 236.5-36 chr4 45872996 45873180 + 1.75 NA Intergenic MIR|SINE|MIR 250966 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 232-29 chr8 86746420 86746622 + 1.75 NA Intergenic L2a|LINE|L2 -2846 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 300-8 chr14 45625172 45625440 + 1.75 NA Intergenic Intergenic 90296 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 187.75-51 chr8 72045867 72046059 + 1.75 NA intron (NM_007332, intron 17 of 26) intron (NM_007332, intron 17 of 26) 29621 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 256-20 chr2 211485382 211485660 + 1.75 NA intron (NM_001042599, intron 20 of 26) L2c|LINE|L2 867950 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 232.5-35 chr5 2839263 2839405 + 1.75 NA Intergenic AluSx1|SINE|Alu -78520 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 156.75-37 chr15 86923634 86923779 + 1.75 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -9174 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 254.5-19 chr4 33043432 33043698 + 1.75 NA Intergenic Intergenic 692527 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 308.25 chr1 68516486 68516837 + 1.75 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -19579 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 204.75-30 chr20 10754990 10755176 + 1.75 NA Intergenic Intergenic 1993 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 176.5-46 chr2 54256259 54256437 + 1.75 NA promoter-TSS (NM_001003937) promoter-TSS (NM_001003937) -119 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 297.5-5 chr2 18927007 18927229 + 1.75 NA Intergenic MER119|DNA|hAT-Charlie 99853 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 179.75-44 chr5 65946397 65946581 + 1.75 NA promoter-TSS (NR_028474) promoter-TSS (NR_028474) -916 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 183.5-11 chr10 72829488 72829629 + 1.75 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) -64181 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 161.5-90 chrX 98481045 98481210 + 1.75 NA Intergenic Intergenic -916592 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 262.5-8 chr13 57914389 57914720 + 1.75 NA Intergenic L2c|LINE|L2 -251273 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 275.75-23 chr8 118371386 118371677 + 1.75 NA intron (NM_001363274, intron 4 of 4) L2|LINE|L2 -249470 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 221.25-23 chr3 57654573 57654795 + 1.75 NA exon (NM_001322176, exon 3 of 3) exon (NM_001322176, exon 3 of 3) 38393 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 242.75-17 chr6 108459486 108459781 + 1.75 NA intron (NR_136553, intron 4 of 8) L1MC5|LINE|L1 -100192 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 359-3 chr2 35613187 35613664 + 1.75 NA Intergenic L1M5|LINE|L1 142020 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 225.25-10 chr2 28200591 28200726 + 1.75 NA intron (NR_120504, intron 1 of 2) intron (NR_120504, intron 1 of 2) 6303 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 392.25-2 chr5 89637915 89638237 + 1.75 NA Intergenic Intergenic 378644 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 213.5-2 chr1 72838575 72838714 + 1.75 NA Intergenic MSTA|LTR|ERVL-MaLR -467526 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 235.25-14 chr2 200235404 200235672 + 1.75 NA Intergenic Intergenic -70341 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 144.25-57 chr4 150307924 150308026 + 1.75 NA intron (NM_001367550, intron 52 of 56) intron (NM_001367550, intron 52 of 56) 229530 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 224.25-11 chr14 51275202 51275445 + 1.75 NA Intergenic AluSz|SINE|Alu 35076 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 309.25-11 chr3 195343789 195343993 + 1.75 NA intron (NM_012287, intron 5 of 22) intron (NM_012287, intron 5 of 22) -72732 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 226.75-20 chr5 24854653 24854843 + 1.75 NA Intergenic MER89-int|LTR|ERV1 -14165 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 229.5-51 chr8 89015515 89015748 + 1.75 NA Intergenic Intergenic -688148 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 365.5-3 chr13 44558909 44559207 + 1.75 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -16838 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 248.25-12 chr2 79362247 79362564 + 1.75 NA Intergenic L1MA8|LINE|L1 138439 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 302.75-3 chr16 26263233 26263444 + 1.75 NA Intergenic MSTB2|LTR|ERVL-MaLR 238101 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 124.5-63 chr22 23651726 23651862 + 1.75 NA intron (NR_024448, intron 11 of 11) intron (NR_024448, intron 11 of 11) -19473 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 212.75-32 chr6 121319905 121320057 + 1.75 NA intron (NR_104452, intron 2 of 35) intron (NR_104452, intron 2 of 35) 14499 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 454.25 chr10 88193122 88193439 + 1.75 NA Intergenic Intergenic 329655 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 169.5-59 chr4 103368551 103368708 + 1.75 NA Intergenic Intergenic -56413 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 208.25-38 chr6 137367973 137368311 + 1.75 NA Intergenic L2c|LINE|L2 126252 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 236.25-23 chr3 43710030 43710203 + 1.75 NA intron (NR_158560, intron 3 of 5) intron (NR_158560, intron 3 of 5) -18522 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 165.5-49 chr2 133624624 133624908 + 1.75 NA Intergenic Intergenic -56303 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 167.5-87 chr8 136899219 136899430 + 1.75 NA Intergenic Intergenic 368526 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 261 chr1 24142499 24142722 + 1.75 NA intron (NM_021258, intron 1 of 6) intron (NM_021258, intron 1 of 6) 530 NM_021258 58985 Hs.110915 NM_021258 ENSG00000142677 IL22RA1 CRF2-9|IL22R|IL22R1 interleukin 22 receptor subunit alpha 1 protein-coding 279.25 chr1 60596362 60596631 + 1.75 NA intron (NR_146508, intron 2 of 7) MLT1F2|LTR|ERVL-MaLR 26189 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 267.25-5 chr17 63640208 63640597 + 1.75 NA intron (NM_203351, intron 3 of 16) intron (NM_203351, intron 3 of 16) 17985 NM_001363768 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 263.25-9 chr22 49109712 49109971 + 1.75 NA Intergenic Intergenic 243071 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 205.25-29 chr5 27052221 27052358 + 1.75 NA Intergenic Intergenic -13703 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 191-9 chr11 29574048 29574169 + 1.75 NA Intergenic Intergenic -20305 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 275.25-19 chr8 17077525 17077783 + 1.75 NA intron (NR_146233, intron 3 of 15) intron (NR_146233, intron 3 of 15) 50416 NM_001349810 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 468.5 chr17 80545486 80545763 + 1.75 NA 5' UTR (NM_001163034, exon 1 of 30) 5' UTR (NM_001163034, exon 1 of 30) 786 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 178.25-10 chr10 33264597 33264760 + 1.75 NA intron (NR_045259, intron 2 of 15) intron (NR_045259, intron 2 of 15) 69989 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 189.75-47 chr8 41220156 41220304 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL 50913 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 323-10 chr2 120822630 120822981 + 1.75 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 30524 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 187.75-27 chr21 29490273 29490465 + 1.75 NA Intergenic Intergenic -5678 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 165.5-57 chr22 34115506 34115646 + 1.75 NA Intergenic MIRc|SINE|MIR -192688 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 239.25-9 chr14 59984949 59985139 + 1.75 NA intron (NR_075071, intron 16 of 32) intron (NR_075071, intron 16 of 32) 65331 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 197-28 chr2 151627847 151627976 + 1.75 NA intron (NM_001271208, intron 68 of 182) intron (NM_001271208, intron 68 of 182) 106565 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 337-10 chr5 32497122 32497435 + 1.75 NA Intergenic MER21A|LTR|ERVL -52538 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 173.5-62 chr22 27632614 27632818 + 1.75 NA Intergenic Intergenic 169040 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 301.5-14 chr5 53108900 53109109 + 1.75 NA promoter-TSS (NR_034107) promoter-TSS (NR_034107) 753 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 185.75-50 chr5 80768393 80768584 + 1.75 NA intron (NM_002439, intron 14 of 23) intron (NM_002439, intron 14 of 23) -113505 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 131.75-58 chr4 75457621 75457701 + 1.75 NA Intergenic LTR49-int|LTR|ERV1 51635 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 291.5-9 chr3 89285132 89285496 + 1.75 NA intron (NM_182644, intron 3 of 6) L2a|LINE|L2 177693 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 205-5 chr10 7356957 7357144 + 1.75 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 52291 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 296.25-3 chr18 51420368 51420684 + 1.75 NA intron (NR_040074, intron 1 of 2) intron (NR_040074, intron 1 of 2) 28484 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 285.25-2 chr1 62491333 62491750 + 1.75 NA intron (NM_001367561, intron 41 of 49) intron (NM_001367561, intron 41 of 49) 54492 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 173.75-36 chr4 132550272 132550500 + 1.75 NA Intergenic Intergenic -40703 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 142-33 chr2 212737588 212737718 + 1.75 NA Intergenic Intergenic -57678 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 192.25-34 chr7 1505725 1505911 + 1.75 NA Intergenic L1ME4b|LINE|L1 -1429 NM_001080453 26173 Hs.532188 NM_001080453 ENSG00000164880 INTS1 INT1|NET28 integrator complex subunit 1 protein-coding 143.25-33 chr17 68927644 68927765 + 1.75 NA intron (NM_001288985, intron 10 of 39) intron (NM_001288985, intron 10 of 39) 27688 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 425.25-2 chr13 56541949 56542330 + 1.75 NA Intergenic Intergenic -598779 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 327.75 chr1 218182750 218183062 + 1.75 NA Intergenic Intergenic -102387 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 172-9 chr12 13226384 13226564 + 1.75 NA Intergenic Intergenic 29748 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 228-16 chr16 24446757 24447002 + 1.75 NA Intergenic MER5A|DNA|hAT-Charlie -92687 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 167.5-93 chr9 90048460 90048593 + 1.75 NA Intergenic L1MDa|LINE|L1 -7027 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 153.75-26 chr14 67480098 67480196 + 1.75 NA intron (NM_001348543, intron 2 of 2) intron (NM_001348543, intron 2 of 2) 8574 NM_001348543 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 174.25-52 chr6 45154201 45154327 + 1.75 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 43506 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 401-2 chr10 115862468 115862831 + 1.75 NA intron (NM_207303, intron 28 of 28) L1MC4a|LINE|L1 332140 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 310.25-8 chr7 41862435 41862737 + 1.75 NA Intergenic Intergenic -159496 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 356.5-5 chr6 28280770 28281115 + 1.75 NA promoter-TSS (NM_001184743) promoter-TSS (NM_001184743) -595 NM_032507 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 183.5-23 chr15 76068272 76068424 + 1.75 NA intron (NM_152335, intron 1 of 10) intron (NM_152335, intron 1 of 10) 8363 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 127-7 chr1 226645095 226645182 + 1.75 NA intron (NM_002221, intron 4 of 7) MIRb|SINE|MIR 29930 NR_103784 100506443 Hs.664293 NR_103784 ITPKB-IT1 - ITPKB intronic transcript 1 ncRNA 146.25-37 chr2 82218039 82218152 + 1.75 NA Intergenic Intergenic -638708 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 247-5 chr11 91354028 91354257 + 1.75 NA Intergenic L1MC5a|LINE|L1 -484940 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 163-53 chr8 105755689 105755848 + 1.75 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 304735 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 166.5-60 chr2 195588256 195588393 + 1.75 NA Intergenic Intergenic -68634 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 273.5-22 chr9 102484106 102484298 + 1.75 NA Intergenic Intergenic -35435 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 341-6 chr6 9779299 9779524 + 1.75 NA Intergenic L1M2|LINE|L1 -625091 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 195.5-20 chr12 48388947 48389157 + 1.75 NA Intergenic Intergenic -37806 NM_001172682 121274 Hs.23492 NM_152320 ENSG00000167528 ZNF641 - zinc finger protein 641 protein-coding 138.75-84 chr9 117614388 117614486 + 1.75 NA Intergenic Intergenic -34169 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 145-22 chr15 67118387 67118555 + 1.75 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) -7245 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 128 chr1 194134116 194134227 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 829426 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 310.75-4 chr14 95467251 95467657 + 1.75 NA intron (NM_001363692, intron 2 of 16) intron (NM_001363692, intron 2 of 16) 8381 NM_001363692 161176 Hs.41502 NM_024633 ENSG00000176438 SYNE3 C14orf139|C14orf49|KASH3|LINC00341|NCRNA00341|NET53|Nesp3 spectrin repeat containing nuclear envelope family member 3 protein-coding 187.25-35 chr22 30484554 30484726 + 1.75 NA Intergenic Intergenic -2884 NR_001580 376844 Hs.534651 NR_001580 SDC4P - syndecan 4 pseudogene pseudo 219-29 chr6 38663275 38663496 + 1.75 NA Intergenic Intergenic -23456 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 347-2 chr13 21095907 21096313 + 1.75 NA Intergenic Intergenic -34524 NM_014572 26524 Hs.78960 NM_014572 ENSG00000150457 LATS2 KPM large tumor suppressor kinase 2 protein-coding 177-36 chr21 28978590 28978719 + 1.75 NA intron (NM_015565, intron 6 of 29) intron (NM_015565, intron 6 of 29) 14223 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 280-12 chr17 35496946 35497236 + 1.75 NA intron (NM_001363830, intron 2 of 4) AluJo|SINE|Alu -9352 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 120.75-48 chr2 62225092 62225191 + 1.75 NA TTS (NM_001319075) TTS (NM_001319075) 9620 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 240 chr1 5832458 5832713 + 1.75 NA Intergenic MER21C|LTR|ERVL 30156 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 179.5-51 chr18 61769302 61769469 + 1.75 NA Intergenic AluJb|SINE|Alu 21209 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 210-44 chr8 130333130 130333300 + 1.75 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -36682 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 179.5-43 chr16 6185411 6185630 + 1.75 NA intron (NM_018723, intron 1 of 15) MIRc|SINE|MIR 165817 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 170.75-64 chr6 141468313 141468504 + 1.75 NA Intergenic LTR25-int|LTR|ERV1 620391 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 411-2 chr2 32443308 32443715 + 1.75 NA exon (NM_016252, exon 20 of 74) exon (NM_016252, exon 20 of 74) 86483 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 127.25 chr1 61248985 61249103 + 1.75 NA TTS (NR_104180) TTS (NR_104180) 4474 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 339.5-4 chr14 53142905 53143318 + 1.75 NA intron (NM_030637, intron 1 of 11) MIR|SINE|MIR 10212 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 154.75-58 chr6 146705085 146705219 + 1.75 NA intron (NM_024694, intron 13 of 35) L1MA8|LINE|L1 98672 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 201-50 chr8 86322910 86323135 + 1.75 NA Intergenic Intergenic -19525 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 122.5-55 chr22 20059798 20059885 + 1.75 NA intron (NM_001283215, intron 6 of 6) L1MB8|LINE|L1 -20391 NM_001190326 54487 Hs.643452 NM_022720 ENSG00000128191 DGCR8 C22orf12|DGCRK6|Gy1|pasha DGCR8 microprocessor complex subunit protein-coding 231.25-20 chr2 32814077 32814251 + 1.75 NA intron (NM_017735, intron 18 of 19) intron (NM_017735, intron 18 of 19) -11269 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 338.5-6 chr4 39633545 39633831 + 1.75 NA intron (NM_001317896, intron 1 of 5) AluJb|SINE|Alu 5177 NM_174921 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 1013.5 chr20 63039974 63041194 + 1.75 NA intron (NR_033369, intron 1 of 5) L1MB4|LINE|L1 2573 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 334.25-5 chr3 81853656 81853863 + 1.75 NA Intergenic MIR|SINE|MIR -92114 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 192-43 chr5 160409049 160409257 + 1.75 NA intron (NM_001364517, intron 6 of 15) intron (NM_001364517, intron 6 of 15) -9056 NM_001303251 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 342.25 chr12 105389767 105390134 + 1.75 NA Intergenic Intergenic 59259 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 282.5-6 chr12 37773922 37774147 + 1.75 NA Intergenic ALR/Alpha|Satellite|centr -542740 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 271.75-11 chr4 108513376 108513622 + 1.75 NA Intergenic Intergenic -43734 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 394-2 chr1 194347006 194347492 + 1.75 NA Intergenic Intergenic 1042504 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 144.75-88 chr8 126833426 126833587 + 1.75 NA Intergenic Intergenic -179648 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 286.75-9 chr5 76460343 76460693 + 1.75 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 57233 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 293-23 chr8 139727927 139728341 + 1.75 NA 3' UTR (NM_031466, exon 23 of 23) 3' UTR (NM_031466, exon 23 of 23) -25011 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 260.75-14 chr3 52949149 52949494 + 1.75 NA intron (NM_016329, intron 3 of 20) L1MCa|LINE|L1 -51773 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 264.75-8 chr17 61878649 61878899 + 1.75 NA intron (NM_001351695, intron 17 of 24) AluJo|SINE|Alu -15215 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 137-66 chr8 64871890 64871985 + 1.75 NA Intergenic Intergenic -73200 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 297.5-6 chr2 39408333 39408610 + 1.75 NA intron (NM_003618, intron 1 of 33) Tigger2|DNA|TcMar-Tigger 28814 NM_001270425 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 149.25-58 chr6 116525410 116525517 + 1.75 NA TTS (NM_153711) TTS (NM_153711) -3580 NM_001256889 221301 Hs.350750 NM_153036 ENSG00000164451 CALHM4 C6orf78|FAM26D calcium homeostasis modulator family member 4 protein-coding 165.5-20 chr12 99997643 99997761 + 1.75 NA Intergenic Intergenic -13048 NM_001352188 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 294.5-8 chr14 85917295 85917644 + 1.75 NA Intergenic Intergenic -17209 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 339.25-3 chr3 153542095 153542447 + 1.75 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 57776 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 297.75-9 chr17 70938783 70939040 + 1.75 NA Intergenic Intergenic 263268 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 192-10 chr12 3729306 3729489 + 1.75 NA intron (NM_001144958, intron 2 of 19) intron (NM_001144958, intron 2 of 19) 23712 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 234.75-27 chr21 46231947 46232149 + 1.75 NA intron (NR_110565, intron 2 of 3) intron (NR_110565, intron 2 of 3) 2817 NR_110567 114044 Hs.655095 NR_002776 ENSG00000215424 MCM3AP-AS1 C21orf85|MCM3AP-AS|MCM3APAS|MCM3APASB|NCRNA00031 MCM3AP antisense RNA 1 ncRNA 259.75 chr1 215141320 215141509 + 1.75 NA intron (NM_001017424, intron 3 of 6) Tigger3b|DNA|TcMar-Tigger 58677 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 216.5-46 chr9 71062967 71063277 + 1.75 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 58499 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 371.5-6 chr2 30620970 30621299 + 1.75 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 173888 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 326.25-14 chr5 53747114 53747412 + 1.75 NA Intergenic L1M1|LINE|L1 72419 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 280-3 chr1 105451572 105451749 + 1.75 NA Intergenic L2a|LINE|L2 167275 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 240.25-16 chr3 17931501 17931685 + 1.75 NA Intergenic Intergenic -30959 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 198.25-8 chr13 99720137 99720321 + 1.75 NA intron (NR_104592, intron 1 of 9) L1MEd|LINE|L1 8772 NR_120383 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 254.25-20 chr5 94089223 94089423 + 1.75 NA intron (NM_032042, intron 1 of 10) intron (NM_032042, intron 1 of 10) 22340 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 212.75-6 chr12 72387315 72387512 + 1.75 NA intron (NM_013381, intron 3 of 18) L2a|LINE|L2 -113904 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 201.25-41 chr8 84314909 84315102 + 1.75 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -100479 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 209-33 chr7 52285084 52285270 + 1.75 NA Intergenic L1MC|LINE|L1 -750456 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 359.5-8 chr6 93736924 93737155 + 1.75 NA intron (NR_152795, intron 4 of 6) intron (NR_152795, intron 4 of 6) 18736 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 443.75-2 chr15 53623768 53624419 + 1.75 NA intron (NM_182758, intron 14 of 19) L1PA16|LINE|L1 -82990 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 387.25-5 chr2 73306503 73306846 + 1.75 NA Intergenic Intergenic -13126 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 368.75-4 chr3 64927185 64927520 + 1.75 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -239352 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 167.75-57 chr5 133438688 133438801 + 1.75 NA intron (NM_015082, intron 3 of 15) LTR101_Mam|LTR|ERVL -11038 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 238.5-10 chr11 24187869 24188052 + 1.75 NA Intergenic Intergenic -309093 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 274.5-8 chr14 48224405 48224602 + 1.75 NA Intergenic Intergenic -429489 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 249.5-5 chr15 95778050 95778435 + 1.75 NA Intergenic Intergenic 345149 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 201.75-13 chr17 33827028 33827198 + 1.75 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR -293353 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 227.5-45 chr6 41820232 41820441 + 1.75 NA intron (NM_001286554, intron 1 of 5) L1MA10|LINE|L1 32893 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 317.25-10 chr17 65513238 65513579 + 1.75 NA Intergenic Intergenic 48240 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 249-44 chr8 107140135 107140344 + 1.75 NA Intergenic Intergenic 196276 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 267.5-22 chr4 105376119 105376313 + 1.75 NA intron (NM_176869, intron 10 of 11) MamSINE1|SINE|tRNA-RTE -23335 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 378 chr10 44046152 44046522 + 1.75 NA Intergenic Intergenic 133935 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 366-12 chr7 19765610 19765950 + 1.75 NA intron (NM_001366627, intron 1 of 4) intron (NM_001366627, intron 1 of 4) 7001 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 222.75-41 chr6 55802098 55802245 + 1.75 NA intron (NM_001329754, intron 2 of 5) ERVL-E-int|LTR|ERVL 73419 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 261.75-10 chr16 54098558 54098746 + 1.75 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 59259 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 235.5-12 chr11 47762397 47762694 + 1.75 NA intron (NM_001318339, intron 2 of 16) AluJo|SINE|Alu 4796 NM_015308 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 156.25-61 chr5 100662587 100662725 + 1.75 NA Intergenic Intergenic 127282 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 133.5-115 chr8 80242575 80242667 + 1.75 NA Intergenic Intergenic 1232 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 314.25 chr1 241033489 241033808 + 1.75 NA intron (NM_001350116, intron 3 of 16) Charlie18a|DNA|hAT-Charlie -98624 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 208.5-51 chr3 85501495 85501638 + 1.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -3493 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 228.75-5 chr11 57128626 57128898 + 1.75 NA Intergenic Intergenic -53191 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 263-28 chr8 131525456 131525618 + 1.75 NA Intergenic MIRb|SINE|MIR -378556 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 340.5-5 chr2 164649626 164649992 + 1.75 NA Intergenic L1MB3|LINE|L1 -28327 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 218.75-42 chr9 100399143 100399339 + 1.75 NA Intergenic L1ME3G|LINE|L1 -27972 NM_080655 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 251.5-27 chr5 128827284 128827469 + 1.75 NA Intergenic Intergenic -137751 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 221.25-32 chr6 163230083 163230337 + 1.75 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -38208 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 432.25-3 chr4 38568075 38568757 + 1.75 NA intron (NR_146991, intron 1 of 2) intron (NR_146991, intron 1 of 2) 4413 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 158.75-57 chr5 60256807 60257010 + 1.75 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 115755 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 317-4 chr14 63775159 63775458 + 1.75 NA Intergenic AluSx1|SINE|Alu -47243 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 181.5-18 chr14 75488459 75488584 + 1.75 NA Intergenic AluSx3|SINE|Alu -33948 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 347-7 chr6 43994167 43994664 + 1.75 NA Intergenic Intergenic -6170 NR_160954 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 341.75-3 chr7 44665614 44665999 + 1.75 NA intron (NM_001363523, intron 5 of 23) intron (NM_001363523, intron 5 of 23) 59179 NM_001363523 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 153.5-3 chr1 77756944 77757120 + 1.75 NA intron (NM_015017, intron 1 of 24) intron (NM_015017, intron 1 of 24) 2820 NM_201626 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 184.25-4 chr1 177529064 177529254 + 1.75 NA Intergenic L1M5|LINE|L1 -171365 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 274.25-17 chr7 54033713 54034055 + 1.75 NA Intergenic Intergenic -221953 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 223.75-23 chr6 142641710 142641911 + 1.75 NA Intergenic Intergenic -3921 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 219.75-34 chr6 27071403 27071609 + 1.75 NA Intergenic L1M5|LINE|L1 -51200 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 215 chr1 1209430 1209552 + 1.75 NA Intergenic Intergenic -2899 NM_004195 8784 Hs.212680 NM_004195 ENSG00000186891 TNFRSF18 AITR|CD357|ENERGEN|GITR|GITR-D TNF receptor superfamily member 18 protein-coding 224.5-34 chr6 89393343 89393496 + 1.75 NA intron (NM_021244, intron 1 of 6) intron (NM_021244, intron 1 of 6) 18854 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 144.25-25 chr16 25002558 25002663 + 1.75 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 12759 NM_001006634 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 297.5-12 chr7 85503859 85504075 + 1.75 NA Intergenic L1MA2|LINE|L1 82845 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 214-33 chr4 72741577 72741745 + 1.75 NA Intergenic Intergenic -172440 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 150.25-11 chr10 80301607 80301769 + 1.75 NA Intergenic L1M4|LINE|L1 -12030 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 190.25-17 chr14 61870641 61870866 + 1.75 NA intron (NM_001367656, intron 1 of 7) L1ME1|LINE|L1 -56942 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 304.25-7 chr14 61475717 61476049 + 1.75 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 94311 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 160.25-28 chr18 7817360 7817487 + 1.75 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 250107 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 185.75-42 chr3 46037099 46037229 + 1.75 NA Intergenic LOR1-int|LTR|ERV1 -9681 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 168-20 chr12 15068428 15068551 + 1.75 NA Intergenic Intergenic 66656 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 271.25-11 chr6 48054579 48054868 + 1.75 NA intron (NM_207499, intron 1 of 2) L1ME4c|LINE|L1 13966 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 209.5-34 chr4 175275080 175275365 + 1.75 NA Intergenic Intergenic 356864 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 217.5-42 chr7 47665266 47665470 + 1.75 NA Intergenic Intergenic 10124 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 192.75-7 chr12 46899507 46899727 + 1.75 NA Intergenic HAL1|LINE|L1 -73620 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 311.75-6 chr2 27831459 27831745 + 1.75 NA intron (NM_022128, intron 6 of 7) L3|LINE|CR1 -57107 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 211-25 chr5 30885977 30886237 + 1.75 NA Intergenic Intergenic -307579 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 273.5-12 chr19 40080200 40080555 + 1.75 NA intron (NM_001142578, intron 5 of 5) L1PA15|LINE|L1 10526 NM_001010880 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 306-4 chr10 77181843 77182085 + 1.75 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 41133 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 267.75-12 chr4 158530137 158530334 + 1.75 NA intron (NR_045583, intron 1 of 16) intron (NR_045583, intron 1 of 16) 8353 NR_045581 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 251.75-15 chr7 79032990 79033342 + 1.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 24178 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 175.25-41 chr4 34235445 34235600 + 1.75 NA intron (NR_147184, intron 2 of 3) MER94|DNA|hAT-Blackjack 34225 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 385.25-4 chr2 163611914 163612353 + 1.75 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 123875 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 248-7 chr17 76767406 76767722 + 1.75 NA intron (NM_001353019, intron 10 of 13) MLT1H2|LTR|ERVL-MaLR 30063 NR_148242 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 241.5-9 chr14 20845372 20845526 + 1.75 NA Intergenic L1MEf|LINE|L1 -42605 NM_198235 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 373-4 chr7 105282852 105283157 + 1.75 NA intron (NM_001350746, intron 2 of 14) L1MB7|LINE|L1 -13927 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 251.25-3 chr1 115454442 115454669 + 1.75 NA Intergenic Intergenic -116319 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 247.75-7 chr16 9242119 9242315 + 1.75 NA Intergenic L2b|LINE|L2 -113371 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 341.25-6 chr14 33694163 33694374 + 1.75 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -14669 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 195.75-42 chr5 36480523 36480669 + 1.75 NA Intergenic L1MC5a|LINE|L1 -125759 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 332.25-3 chr18 32830698 32831059 + 1.75 NA Intergenic Intergenic -57855 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 279-26 chr9 74926460 74926824 + 1.75 NA Intergenic HAL1|LINE|L1 26270 NM_017998 55071 Hs.532296 NM_017998 ENSG00000135045 C9orf40 - chromosome 9 open reading frame 40 protein-coding 246.75-16 chr2 143030969 143031124 + 1.75 NA intron (NM_001199241, intron 12 of 14) MER47A|DNA|TcMar-Tigger -98373 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 329.25-4 chr2 153484358 153484587 + 1.75 NA Intergenic L1ME4a|LINE|L1 -5710 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 200-6 chr10 126913903 126914026 + 1.75 NA intron (NM_001290223, intron 1 of 51) MIRb|SINE|MIR 8555 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 354-12 chrX 81432267 81432609 + 1.75 NA Intergenic L1MC5a|LINE|L1 230336 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 211.25-19 chr2 66637957 66638175 + 1.75 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 64036 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 171.75-23 chr17 70664332 70664502 + 1.75 NA Intergenic Intergenic 494882 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 208.25 chr1 26627686 26627907 + 1.75 NA Intergenic L1MC4|LINE|L1 66335 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 297.25-10 chr17 63020621 63020913 + 1.75 NA intron (NM_025185, intron 2 of 25) MSTB|LTR|ERVL-MaLR 54532 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 283-7 chr15 64222524 64222805 + 1.75 NA intron (NM_001329607, intron 4 of 11) intron (NM_001329607, intron 4 of 11) -59509 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 132.25-79 chr6 48097701 48097835 + 1.75 NA Intergenic Intergenic -29079 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 501.75-2 chr8 136138261 136138948 + 1.75 NA Intergenic Intergenic -392194 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 198-38 chr4 146852907 146853034 + 1.75 NA intron (NR_133922, intron 8 of 13) intron (NR_133922, intron 8 of 13) 92894 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 280.75 chr10 70256422 70256586 + 1.75 NA intron (NM_022146, intron 3 of 3) intron (NM_022146, intron 3 of 3) -23075 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 216-11 chr13 63239191 63239401 + 1.75 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 88798 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 357.5 chr11 111720903 111721199 + 1.75 NA exon (NM_015191, exon 12 of 15) exon (NM_015191, exon 12 of 15) 45338 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 208-11 chr18 27351861 27351979 + 1.75 NA Intergenic AluSq2|SINE|Alu -9264 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 198-33 chr4 60618466 60618673 + 1.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -304050 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 196-4 chr10 34134476 34134693 + 1.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -361904 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 342.25-6 chr6 133875713 133876002 + 1.75 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 13149 NR_109982 100507308 Hs.102408 NR_109982 ENSG00000227954 TARID EYA4-AS1 TCF21 antisense RNA inducing promoter demethylation ncRNA 306.25-2 chr10 125666043 125666303 + 1.75 NA intron (NM_001128202, intron 1 of 3) L1MA3|LINE|L1 16990 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 403.75-2 chr9 83296241 83296530 + 1.75 NA intron (NM_001244960, intron 12 of 13) intron (NM_001244960, intron 12 of 13) -29117 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 444.25-2 chr3 122676293 122676601 + 1.75 NA Intergenic L1MC5a|LINE|L1 -4392 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 279.25-12 chr18 60162649 60162962 + 1.75 NA Intergenic Intergenic 209970 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 212.5-52 chr7 136489984 136490162 + 1.75 NA Intergenic Intergenic -378579 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 375.75-10 chr4 90547278 90547531 + 1.75 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 312373 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 223.75-3 chr1 233250505 233250633 + 1.75 NA intron (NM_014801, intron 8 of 33) intron (NM_014801, intron 8 of 33) 45156 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 304.25-5 chr12 47014333 47014623 + 1.75 NA Intergenic Intergenic -65125 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 203.25-7 chr10 120697036 120697225 + 1.75 NA Intergenic Tigger5b|DNA|TcMar-Tigger 99181 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 356-5 chr8 111714183 111714552 + 1.75 NA Intergenic L1MB1|LINE|L1 337728 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 188.5-55 chr8 117151997 117152144 + 1.75 NA intron (NM_173851, intron 2 of 7) intron (NM_173851, intron 2 of 7) 17075 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 412.75 chr3 80035322 80035719 + 1.75 NA Intergenic L2|LINE|L2 -267522 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 500.5 chr3 188616905 188617453 + 1.75 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -48513 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 253.75-24 chr9 27328161 27328345 + 1.75 NA 3' UTR (NM_024761, exon 4 of 4) 3' UTR (NM_024761, exon 4 of 4) -31103 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 337-12 chr6 154070386 154070736 + 1.75 NA intron (NM_001285522, intron 1 of 1) intron (NM_001285522, intron 1 of 1) -15946 NM_001285526 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 256-24 chr5 129688584 129688826 + 1.75 NA intron (NM_133638, intron 18 of 22) intron (NM_133638, intron 18 of 22) -59389 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 297-26 chr9 26355131 26355402 + 1.75 NA Intergenic L1MA9|LINE|L1 288591 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 262.25-12 chr2 22381918 22382096 + 1.75 NA Intergenic Intergenic -154472 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 262-18 chr2 149932766 149933056 + 1.75 NA Intergenic Intergenic -73720 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 179.25-56 chr9 108330165 108330333 + 1.75 NA Intergenic HAL1|LINE|L1 525737 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 423.5-6 chr8 103522459 103522766 + 1.75 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -20702 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 252.5-26 chr4 37071135 37071423 + 1.75 NA Intergenic Intergenic 69500 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 153.25-36 chr3 13478353 13478491 + 1.75 NA intron (NR_046690, intron 1 of 1) intron (NR_046690, intron 1 of 1) 1631 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 297.5-13 chr8 79298205 79298498 + 1.75 NA Intergenic Intergenic -33837 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 277.25-27 chr7 19103220 19103434 + 1.75 NA Intergenic Intergenic 14309 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 293 chr1 211382229 211382464 + 1.75 NA promoter-TSS (NR_026761) promoter-TSS (NR_026761) -409 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 189.5-67 chr8 39945690 39945880 + 1.75 NA intron (NM_194294, intron 1 of 10) MIR3|SINE|MIR 10830 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 264-8 chr14 57684755 57685060 + 1.75 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) 180092 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 356.25-6 chr14 52603718 52604087 + 1.75 NA intron (NM_001099652, intron 3 of 6) L1MA4|LINE|L1 51066 NM_001099652 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 433.75 chr4 31975079 31975397 + 1.75 NA Intergenic MER39B|LTR|ERV1 -22141 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 287.5-9 chr14 72639583 72639880 + 1.75 NA intron (NM_001280542, intron 8 of 10) MLT1F2|LTR|ERVL-MaLR 122911 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 222-26 chr3 68120778 68120911 + 1.75 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 116597 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 268.75-17 chr2 146873140 146873411 + 1.75 NA Intergenic Intergenic 286218 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 208.75-21 chr3 192253309 192253549 + 1.75 NA intron (NR_046596, intron 1 of 4) GA-rich|Low_complexity|Low_complexity 14799 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 181-26 chr17 57910648 57910857 + 1.75 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -7363 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 269 chr1 57048363 57048645 + 1.75 NA intron (NM_001353986, intron 9 of 14) intron (NM_001353986, intron 9 of 14) -82364 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 252.25-24 chr8 142932905 142933106 + 1.75 NA Intergenic L1MEi|LINE|L1 -15162 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 208.75-27 chr6 17702786 17702920 + 1.75 NA intron (NM_005124, intron 1 of 21) intron (NM_005124, intron 1 of 21) -3277 NR_134616 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 234.75-29 chr3 29047760 29047926 + 1.75 NA Intergenic L1ME3A|LINE|L1 233096 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 173.5-52 chr2 220579696 220579857 + 1.75 NA Intergenic Intergenic -673211 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 224-12 chr2 36737408 36737561 + 1.75 NA intron (NM_001177969, intron 3 of 14) intron (NM_001177969, intron 3 of 14) 40777 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 215-32 chr4 35951037 35951166 + 1.75 NA Intergenic MamGypLTR1a|LTR|Gypsy 292838 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 329.25-3 chr2 64166279 64166506 + 1.75 NA Intergenic L1MB3|LINE|L1 -21972 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 170.25-24 chr15 57179944 57180095 + 1.75 NA intron (NM_001322154, intron 6 of 20) intron (NM_001322154, intron 6 of 20) -39411 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 250.25 chr1 210054199 210054448 + 1.75 NA intron (NM_153262, intron 4 of 7) intron (NM_153262, intron 4 of 7) 116106 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 126.5-6 chr1 80452146 80452285 + 1.75 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -83540 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 128.75-70 chr4 92969531 92969643 + 1.75 NA intron (NM_001286838, intron 2 of 14) MIR|SINE|MIR 665188 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 271.25-12 chr8 51869510 51869727 + 1.75 NA intron (NM_001363193, intron 1 of 5) intron (NM_001363193, intron 1 of 5) 29418 NM_001286783 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 189.75-42 chr5 133640522 133640705 + 1.75 NA Intergenic Intergenic -28072 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 233.25-15 chr17 63269564 63269728 + 1.75 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 170621 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 219.25-27 chr5 51804400 51804562 + 1.75 NA Intergenic Intergenic -203550 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 172.75-42 chr8 52182910 52183018 + 1.75 NA intron (NM_014682, intron 8 of 25) intron (NM_014682, intron 8 of 25) -11398 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 301.25 chr10 92593077 92593301 + 1.75 NA promoter-TSS (NM_004523) promoter-TSS (NM_004523) 59 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 143.75-68 chr5 10904710 10904814 + 1.75 NA Intergenic MIRc|SINE|MIR -143528 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 236.25-45 chr9 27892827 27892983 + 1.75 NA Intergenic Intergenic -319039 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 293.25-5 chr12 112826719 112827129 + 1.75 NA intron (NM_001347955, intron 2 of 20) L1ME3|LINE|L1 35176 NM_014954 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 337.75-9 chr4 163130943 163131581 + 1.75 NA intron (NM_138386, intron 7 of 7) L1MC|LINE|L1 35628 NM_138386 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 287.75-7 chr7 85473620 85473834 + 1.75 NA intron (NR_134240, intron 2 of 3) intron (NR_134240, intron 2 of 3) 52605 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 518.5 chr11 84023082 84023807 + 1.75 NA intron (NM_001142699, intron 11 of 27) MIRb|SINE|MIR 249836 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 174.25-30 chr18 8640724 8640882 + 1.75 NA Intergenic Intergenic 31358 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 286.5-4 chr10 61958746 61958995 + 1.75 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 57171 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 265.25-14 chr16 4562044 4562352 + 1.75 NA intron (NM_001145011, intron 1 of 15) AluJo|SINE|Alu 5708 NM_001145011 342346 Hs.684212 NM_001145011 ENSG00000205832 C16orf96 - chromosome 16 open reading frame 96 protein-coding 280.25-16 chr4 163510416 163510704 + 1.75 NA intron (NM_018352, intron 2 of 6) L1ME1|LINE|L1 15870 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 168-42 chr2 125991876 125992038 + 1.75 NA Intergenic L1MA3|LINE|L1 126028 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 234.25-34 chr8 53977509 53977800 + 1.75 NA intron (NM_201437, intron 7 of 8) intron (NM_201437, intron 7 of 8) 44794 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 172.5-91 chr9 83207194 83207334 + 1.75 NA Intergenic Intergenic 60004 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 267.5-8 chr16 84538325 84538532 + 1.75 NA Intergenic L1ME3A|LINE|L1 -33769 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 445.25-2 chr11 59825211 59825528 + 1.75 NA Intergenic L1PA17|LINE|L1 -14591 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 162.75-8 chr10 23124221 23124393 + 1.75 NA Intergenic L1MEf|LINE|L1 28728 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 268.25-11 chr2 208077077 208077292 + 1.75 NA Intergenic LTR33|LTR|ERVL -41945 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 127.25-97 chr8 136286630 136286707 + 1.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -244130 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 171.5-21 chr12 121470937 121471099 + 1.75 NA intron (NM_001005366, intron 12 of 22) intron (NM_001005366, intron 12 of 22) -26666 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 270.75-6 chr17 53546337 53546538 + 1.75 NA Intergenic Intergenic -276490 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 193.25-34 chr5 25221405 25221594 + 1.75 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 30546 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 202.5-32 chr4 29611283 29611427 + 1.75 NA Intergenic Intergenic 397063 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 255-23 chr5 163655022 163655333 + 1.75 NA Intergenic HAL1|LINE|L1 149558 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 497-2 chr10 131258581 131259084 + 1.75 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 52889 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 210.75-34 chr6 81033799 81034050 + 1.75 NA Intergenic Intergenic 718757 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 277-27 chrX 43241442 43241764 + 1.75 NA Intergenic L1M5|LINE|L1 64609 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 114.5-15 chr12 84374571 84374697 + 1.75 NA Intergenic Intergenic 538165 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 178-35 chr3 146083048 146083247 + 1.75 NA intron (NM_182943, intron 11 of 19) intron (NM_182943, intron 11 of 19) -13962 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 224-13 chr2 78448204 78448399 + 1.75 NA Intergenic L1M5|LINE|L1 -97230 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 292.5-6 chr4 36036414 36036683 + 1.75 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 207391 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 244.25 chr10 1443430 1443658 + 1.75 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -83086 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 326-8 chr16 81204886 81205088 + 1.75 NA intron (NM_001076780, intron 5 of 17) intron (NM_001076780, intron 5 of 17) 15407 NR_126532 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 291.25-18 chr5 67062528 67062856 + 1.75 NA intron (NM_001297651, intron 2 of 25) intron (NM_001297651, intron 2 of 25) 58037 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 301.75-15 chr8 112880004 112880187 + 1.75 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 236602 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 188.25-53 chr7 1194486 1194621 + 1.75 NA Intergenic Intergenic 33768 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 336.75-9 chr5 20296669 20296997 + 1.75 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -8718 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 337.25-3 chr17 75345273 75345679 + 1.75 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) -56027 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 226.5-40 chr4 132327854 132328006 + 1.75 NA Intergenic Intergenic -263159 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 228.25-24 chr3 28865172 28865407 + 1.75 NA Intergenic Intergenic 290011 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 318-19 chr6 64478847 64479101 + 1.75 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 672138 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 177.5-30 chr2 25922377 25922501 + 1.75 NA Intergenic L2a|LINE|L2 -43952 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 293.5-4 chr11 118784952 118785350 + 1.75 NA intron (NM_001257191, intron 2 of 13) intron (NM_001257191, intron 2 of 13) 5797 NM_001257191 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 394.5 chr10 57777961 57778222 + 1.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -473532 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 259-5 chr11 20928888 20929079 + 1.75 NA intron (NM_201551, intron 9 of 18) MIRb|SINE|MIR 259397 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 299.5-13 chr8 103518676 103518887 + 1.75 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -16871 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 139-32 chr2 84191002 84191106 + 1.75 NA Intergenic Intergenic -99628 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 229.5-26 chr2 22393524 22393769 + 1.75 NA Intergenic Intergenic -142833 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 169.25-17 chr12 53279398 53279516 + 1.75 NA intron (NM_012291, intron 11 of 30) MIRb|SINE|MIR 11158 NM_012291 9700 Hs.153479 NM_012291 ENSG00000135476 ESPL1 ESP1|SEPA extra spindle pole bodies like 1, separase protein-coding 269.75-14 chr5 1819908 1820080 + 1.75 NA Intergenic Intergenic 18587 NM_004553 4726 Hs.408257 NM_004553 ENSG00000145494 NDUFS6 CI-13kA|CI-13kD-A|CI13KDA|MC1DN9 NADH:ubiquinone oxidoreductase subunit S6 protein-coding 156.5-70 chr6 146602082 146602208 + 1.75 NA intron (NM_024694, intron 1 of 35) intron (NM_024694, intron 1 of 35) 3173 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 119-50 chr3 63378451 63378565 + 1.75 NA intron (NM_001130003, intron 2 of 5) L1MDa|LINE|L1 -64804 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 288.5-19 chr8 91217253 91217641 + 1.75 NA intron (NM_001282356, intron 1 of 19) MLT1K|LTR|ERVL-MaLR 7951 NM_001282356 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 228-39 chr6 162215446 162215637 + 1.75 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -511591 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 148.5-52 chr2 213777873 213777995 + 1.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 19867 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 257.75-10 chr16 35707698 35707858 + 1.75 NA Intergenic ALR/Alpha|Satellite|centr -38774 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 244-16 chr3 61356799 61357066 + 1.75 NA Intergenic Intergenic -105471 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 179.75-48 chr6 90052824 90052942 + 1.75 NA intron (NM_021813, intron 5 of 8) L1MEd|LINE|L1 158414 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 300.5-7 chr16 51962742 51963125 + 1.75 NA Intergenic Intergenic 111002 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 250.75-19 chr5 121058530 121058705 + 1.75 NA Intergenic Intergenic -263933 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 181.25-32 chr2 173355031 173355155 + 1.75 NA intron (NM_031942, intron 1 of 9) CpG 221 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 183.25-38 chr4 67931395 67931561 + 1.75 NA intron (NM_001114387, intron 4 of 9) intron (NM_001114387, intron 4 of 9) 32015 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 273.5-3 chr1 204806875 204807140 + 1.75 NA Intergenic Intergenic -21645 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 178.75-63 chr9 72199621 72199783 + 1.75 NA intron (NM_001242506, intron 3 of 14) intron (NM_001242506, intron 3 of 14) 50262 NM_001351573 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 226-25 chr5 72090383 72090549 + 1.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -17009 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 181.75-15 chr2 120470754 120470866 + 1.75 NA Intergenic MIR3|SINE|MIR -4461 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 256-13 chr2 20039137 20039301 + 1.75 NA intron (NM_014713, intron 2 of 6) intron (NM_014713, intron 2 of 6) 12409 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 198.5-16 chr16 74464648 74464799 + 1.75 NA intron (NR_027264, intron 20 of 26) intron (NR_027264, intron 20 of 26) -43253 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 370.75 chr10 118304361 118304705 + 1.75 NA 3' UTR (NM_001134672, exon 8 of 8) 3' UTR (NM_001134672, exon 8 of 8) 37791 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 252-30 chr8 62014887 62015075 + 1.75 NA Intergenic Intergenic 125142 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 159.5-25 chr14 51105486 51105669 + 1.75 NA Intergenic Intergenic -9873 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 368-4 chr2 51723520 51723812 + 1.75 NA intron (NR_135237, intron 5 of 10) L2a|LINE|L2 -646982 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 355.25 chr1 218189898 218190183 + 1.75 NA Intergenic Charlie25|DNA|hAT-Charlie -95253 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 240.5-12 chr10 104124711 104125002 + 1.75 NA intron (NM_001002759, intron 3 of 3) AluJo|SINE|Alu 2685 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 303.5-22 chrX 41753063 41753298 + 1.75 NA intron (NM_003688, intron 3 of 26) intron (NM_003688, intron 3 of 26) 28999 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 140.5-97 chr6 78744706 78744846 + 1.75 NA Intergenic L1MA4A|LINE|L1 -122775 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 116.5-11 chr10 21722112 21722215 + 1.75 NA intron (NM_001195626, intron 14 of 22) L1MD3|LINE|L1 187991 NM_004641 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 321.75-24 chrX 9150181 9150436 + 1.75 NA Intergenic Intergenic -116181 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 220.75-10 chr15 83567019 83567262 + 1.75 NA intron (NM_001324185, intron 4 of 9) intron (NM_001324185, intron 4 of 9) 76526 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 216.75-38 chr6 39423398 39423616 + 1.75 NA intron (NM_001289020, intron 14 of 21) L2c|LINE|L2 7883 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 374.25-4 chr2 133597548 133597886 + 1.75 NA Intergenic Intergenic -29254 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 352-7 chr5 74458062 74458433 + 1.75 NA intron (NR_126354, intron 2 of 2) Plat_L3|LINE|CR1 78729 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 240-21 chr6 80008591 80008785 + 1.75 NA intron (NM_003318, intron 4 of 21) intron (NM_003318, intron 4 of 21) 4039 NM_003318 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 208-12 chr18 63377973 63378162 + 1.75 NA Intergenic Intergenic -10861 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 262-20 chr2 204133034 204133366 + 1.75 NA Intergenic Intergenic 196452 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 169.5-89 chr9 76216051 76216204 + 1.75 NA intron (NM_001190482, intron 20 of 36) intron (NM_001190482, intron 20 of 36) 178299 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 237.75-5 chr10 38529212 38529422 + 1.75 NA Intergenic Intergenic 101171 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 175.25-55 chr8 97321742 97321872 + 1.75 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) -36458 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 333.5-10 chr3 39548556 39548853 + 1.75 NA Intergenic Intergenic 46638 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 164.5-81 chr6 62944701 62944914 + 1.75 NA Intergenic Intergenic 375170 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 240.75-22 chr2 231958617 231958835 + 1.75 NA Intergenic Intergenic -2857 NM_152383 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 204.25-19 chr16 8490819 8491049 + 1.75 NA Intergenic Intergenic 98904 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 203.75-37 chr6 93306084 93306250 + 1.75 NA intron (NM_004440, intron 5 of 16) intron (NM_004440, intron 5 of 16) 113392 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 201.25-3 chr1 244705982 244706150 + 1.75 NA non-coding (NR_123735, exon 5 of 5) non-coding (NR_123735, exon 5 of 5) 52940 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 259.75-9 chr2 14516345 14516517 + 1.75 NA Intergenic AluSz|SINE|Alu -115473 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 196.5-64 chr6 117716024 117716194 + 1.75 NA Intergenic L1MA8|LINE|L1 40640 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 305.25-12 chr4 80602304 80602536 + 1.75 NA intron (NM_152770, intron 3 of 5) intron (NM_152770, intron 3 of 5) 266700 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 243.5-13 chr3 9533772 9533983 + 1.75 NA intron (NM_198560, intron 2 of 3) intron (NM_198560, intron 2 of 3) 19945 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 183-73 chr9 114948017 114948203 + 1.75 NA Intergenic Intergenic -17515 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 222.5-29 chr20 50118867 50119111 + 1.75 NA 3' UTR (NM_199129, exon 6 of 6) 3' UTR (NM_199129, exon 6 of 6) -3032 NM_001282575 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 235.25-22 chr5 108215098 108215316 + 1.75 NA intron (NM_001163315, intron 5 of 8) L1MB5|LINE|L1 166891 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 232-7 chr14 79489144 79489286 + 1.75 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 209835 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 322.25-11 chr2 156198460 156198798 + 1.75 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 56302 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 279.25-8 chr15 68072840 68073047 + 1.75 NA intron (NM_001320687, intron 2 of 14) intron (NM_001320687, intron 2 of 14) 18367 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 199.75-9 chr14 62293011 62293197 + 1.75 NA Intergenic HAL1|LINE|L1 -153131 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 266.5-9 chr13 80945946 80946179 + 1.75 NA Intergenic Intergenic -72329 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 517.75 chr14 62563938 62564401 + 1.75 NA Intergenic Intergenic -424196 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 220.25-23 chr2 200283520 200283743 + 1.75 NA Intergenic LTR33|LTR|ERVL -22248 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 296-2 chr1 79158737 79159151 + 1.75 NA Intergenic L1PA13|LINE|L1 -152214 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 280.25-8 chr19 29502849 29503107 + 1.75 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 22774 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 160.75-8 chr10 53003421 53003675 + 1.75 NA Intergenic Intergenic -231848 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 313.25-2 chr1 179940602 179940812 + 1.75 NA Intergenic AluSq2|SINE|Alu -14103 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 133.5-95 chr5 141092137 141092275 + 1.75 NA Intergenic Intergenic -2409 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 268.75-14 chr2 44483641 44483879 + 1.75 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 121813 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 274.5-27 chr5 24625694 24625859 + 1.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 19202 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 318.5-2 chr10 79225599 79225804 + 1.75 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -121768 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 302.25-12 chr5 152114745 152115029 + 1.75 NA intron (NR_109876, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 155989 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 243-8 chr15 95271408 95271637 + 1.75 NA Intergenic Intergenic 55578 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 144.75-39 chr2 35572987 35573181 + 1.75 NA Intergenic L1MA5|LINE|L1 101679 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 136-67 chr8 85540059 85540254 + 1.75 NA Intergenic Intergenic -75241 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 355.5-2 chr10 55422445 55422656 + 1.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -176492 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 196.5-58 chr5 92238030 92238184 + 1.75 NA Intergenic Charlie20a|DNA|hAT-Charlie -854790 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 232.25-4 chr11 5748974 5749199 + 1.75 NA Intergenic Intergenic -5607 NM_001005175 390072 Hs.553735 NM_001005175 ENSG00000181074 OR52N4 OR11-64 olfactory receptor family 52 subfamily N member 4 (gene/pseudogene) protein-coding 436-2 chr2 43041597 43041956 + 1.75 NA Intergenic Intergenic -2233 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 340-7 chr5 35881201 35881470 + 1.75 NA Intergenic Intergenic 24444 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 342.5 chr10 46542510 46542734 + 1.75 NA Intergenic THE1D|LTR|ERVL-MaLR 13449 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 478-2 chr7 23319319 23319855 + 1.75 NA intron (NM_006547, intron 10 of 14) intron (NM_006547, intron 10 of 14) 20248 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 250.25-11 chr20 63222786 63222976 + 1.75 NA Intergenic Intergenic -6750 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 358.25-3 chr11 26006067 26006430 + 1.75 NA Intergenic L1MA5|LINE|L1 -182875 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 397.5-2 chr17 20251258 20251626 + 1.75 NA intron (NM_001033553, intron 9 of 14) L1MEg|LINE|L1 -69732 NR_023380 348254 Hs.462475 NR_023380 CCDC144CP CCDC144C coiled-coil domain containing 144C, pseudogene pseudo 155 chr1 62574632 62574751 + 1.75 NA intron (NM_001367561, intron 18 of 49) Tigger2|DNA|TcMar-Tigger -22829 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 187.25-62 chr8 26091115 26091374 + 1.75 NA Intergenic L2b|LINE|L2 -45831 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 413-4 chr8 130861421 130861720 + 1.75 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 179339 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 239-16 chr16 26004463 26004659 + 1.75 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -20676 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 329.25-7 chr9 75677635 75677829 + 1.75 NA Intergenic L1MC1|LINE|L1 -212912 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 212.5-38 chr4 41031875 41032137 + 1.75 NA intron (NM_173075, intron 5 of 16) intron (NM_173075, intron 5 of 16) -174814 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 176-13 chr11 105416983 105417160 + 1.75 NA Intergenic L1M5|LINE|L1 -193002 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 337.5-6 chr3 45130155 45130365 + 1.75 NA intron (NM_178181, intron 1 of 3) AluJb|SINE|Alu 16118 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 306.75-8 chr4 104976207 104976447 + 1.75 NA Intergenic Intergenic -169548 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 224-22 chr3 94538338 94538523 + 1.75 NA Intergenic Intergenic -399833 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 212.25-39 chr7 49030246 49030516 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL 105834 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 226-32 chr7 119772009 119772221 + 1.75 NA intron (NR_131961, intron 3 of 3) MLT1E1A|LTR|ERVL-MaLR 135260 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 270.25-8 chr2 101789584 101789861 + 1.75 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 92015 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 300.75-10 chr5 6866118 6866465 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -38370 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 324.25-5 chr5 144457758 144458011 + 1.75 NA intron (NM_001370487, intron 2 of 2) MIRc|SINE|MIR 252493 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 298.25-16 chr8 140097705 140097929 + 1.75 NA non-coding (NR_144431, exon 1 of 1) non-coding (NR_144431, exon 1 of 1) 2718 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 228-51 chrX 88683202 88683563 + 1.75 NA Intergenic Intergenic -63843 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 352.5-6 chr19 52236420 52236754 + 1.75 NA Intergenic L1M1|LINE|L1 14567 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 221.25-29 chr5 35778393 35778626 + 1.75 NA intron (NM_024867, intron 29 of 36) intron (NM_024867, intron 29 of 36) -78382 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 380.75-2 chr11 107420779 107421224 + 1.75 NA intron (NM_152434, intron 8 of 17) L1ME1|LINE|L1 36845 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 217.75-23 chr2 140152417 140152597 + 1.75 NA Intergenic Intergenic 434178 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 220.75-6 chr12 130166566 130166785 + 1.75 NA TTS (NM_007197) TTS (NM_007197) 4216 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 231.75-4 chr1 232267674 232267849 + 1.75 NA Intergenic Intergenic 247847 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 158.5-91 chr7 21975890 21976020 + 1.75 NA Intergenic HAL1|LINE|L1 -30056 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 176-39 chr6 19207193 19207360 + 1.75 NA Intergenic L1PA16|LINE|L1 -26796 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 385-3 chr18 73067614 73067853 + 1.75 NA Intergenic Charlie1|DNA|hAT-Charlie 196765 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 335-6 chr3 85046772 85047047 + 1.75 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 15355 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 135.75-13 chr10 32426393 32426522 + 1.75 NA Intergenic L2c|LINE|L2 19599 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 248.25-6 chr13 79094469 79094860 + 1.75 NA Intergenic Intergenic -254614 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 137.5-74 chr22 28601441 28601644 + 1.75 NA intron (NM_001145418, intron 2 of 22) MER2|DNA|TcMar-Tigger 78323 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 313.5-17 chr8 35056642 35056929 + 1.75 NA Intergenic L1ME1|LINE|L1 -178690 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 257.5-8 chr13 106821541 106821741 + 1.75 NA Intergenic Intergenic 167761 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 171.5-62 chr4 130609449 130609701 + 1.75 NA Intergenic Intergenic 233214 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 219.25-2 chr1 115444009 115444265 + 1.75 NA Intergenic L1MC5a|LINE|L1 -105901 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 252-20 chr3 89426511 89426764 + 1.75 NA intron (NM_005233, intron 11 of 16) intron (NM_005233, intron 11 of 16) 319016 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 197-8 chr11 113119413 113119731 + 1.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 154329 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 179.25-55 chr9 98110866 98111072 + 1.75 NA intron (NM_033219, intron 1 of 6) AluJb|SINE|Alu 8253 NM_033219 9830 Hs.575631 NM_014788 ENSG00000106785 TRIM14 - tripartite motif containing 14 protein-coding 251.75-5 chr19 3331932 3332166 + 1.75 NA Intergenic Intergenic -27581 NM_001245005 4782 Hs.170131 NM_005597 ENSG00000141905 NFIC CTF|CTF5|NF-I|NFI nuclear factor I C protein-coding 156.75-86 chr8 87116084 87116296 + 1.75 NA intron (NM_173538, intron 4 of 10) L2a|LINE|L2 249775 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 221.25-34 chr8 21143834 21144067 + 1.75 NA Intergenic Intergenic -154289 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 225.5-8 chr1 197907775 197908023 + 1.75 NA TTS (NM_001024594) TTS (NM_001024594) -4606 NM_001014434 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 349.25-5 chr6 133331222 133331593 + 1.75 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 89908 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 239.5-25 chr6 110057401 110057782 + 1.75 NA Intergenic L1ME5|LINE|L1 79280 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 241.25-5 chr14 69631848 69631989 + 1.75 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 20322 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 243.5-19 chr5 32060122 32060298 + 1.75 NA intron (NM_178140, intron 13 of 24) intron (NM_178140, intron 13 of 24) 114109 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 277.5-23 chr9 27309047 27309307 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL -12027 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 197.25-51 chr5 141770119 141770290 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -87974 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 275-7 chr17 54654409 54654688 + 1.75 NA Intergenic Intergenic -246143 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 227.75-7 chr15 99037305 99037469 + 1.75 NA Intergenic L1MEd|LINE|L1 22683 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 301-22 chr8 85544082 85544439 + 1.75 NA Intergenic MamGypLTR2b|LTR|Gypsy -79345 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 255-9 chr15 47193733 47194000 + 1.75 NA intron (NM_001198999, intron 1 of 19) L2a|LINE|L2 9777 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 264.75-13 chr21 24841267 24841492 + 1.75 NA intron (NR_046198, intron 1 of 3) LTR9C|LTR|ERV1 829 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 142.75-34 chr17 70172155 70172288 + 1.75 NA intron (NM_000891, intron 1 of 1) intron (NM_000891, intron 1 of 1) 2686 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 124.5-99 chr7 15165870 15165986 + 1.75 NA Intergenic Intergenic -191070 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 399.25-5 chr3 55011147 55011418 + 1.75 NA intron (NM_018398, intron 34 of 37) intron (NM_018398, intron 34 of 37) -44180 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 285-12 chr22 26776173 26776442 + 1.75 NA intron (NR_110543, intron 3 of 5) MLT1I|LTR|ERVL-MaLR -83904 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 286.75-7 chr3 78493322 78493506 + 1.75 NA Intergenic L1ME3G|LINE|L1 -444451 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 364 chr10 104096833 104097072 + 1.75 NA Intergenic L1ME1|LINE|L1 -11072 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 331.25-7 chr4 102180229 102180587 + 1.75 NA Intergenic Intergenic 143904 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 304.25-15 chr8 135425579 135425871 + 1.75 NA Intergenic MIR3|SINE|MIR -31731 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 336.75-12 chr7 81642518 81642860 + 1.75 NA intron (NR_126025, intron 1 of 10) (ATTAAT)n|Simple_repeat|Simple_repeat -16473 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 194.75-52 chr8 142139331 142139514 + 1.75 NA Intergenic Intergenic -36917 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 183.5-80 chr9 35996355 35996572 + 1.75 NA Intergenic Intergenic -38309 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 498.5-3 chr2 39551204 39551697 + 1.75 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 114034 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 324.5-6 chr14 74834356 74834713 + 1.75 NA intron (NM_019589, intron 19 of 20) intron (NM_019589, intron 19 of 20) 29300 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 206-35 chr7 113785855 113786008 + 1.75 NA Intergenic L1MEc|LINE|L1 133078 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 208.5-21 chr14 60816717 60816912 + 1.75 NA intron (NM_001177963, intron 5 of 6) intron (NM_001177963, intron 5 of 6) 82053 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 211.25-11 chr12 33086967 33087129 + 1.75 NA Intergenic Intergenic -190202 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 323-5 chr12 96003894 96004207 + 1.75 NA intron (NR_132659, intron 16 of 18) intron (NR_132659, intron 16 of 18) -7685 NM_001258333 3034 Hs.190783 NM_002108 ENSG00000084110 HAL HIS|HSTD histidine ammonia-lyase protein-coding 303-12 chr6 35924592 35924779 + 1.75 NA Intergenic L3|LINE|CR1 -3505 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 265.75-13 chr6 157075204 157075419 + 1.75 NA intron (NM_001363725, intron 2 of 17) intron (NM_001363725, intron 2 of 17) 38884 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 193.75-36 chr3 80854234 80854415 + 1.75 NA Intergenic MER126|DNA|DNA 83620 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 161.5-49 chr2 157019977 157020154 + 1.75 NA Intergenic MamGypsy2-I|LTR|Gypsy -237640 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 307.75-5 chr2 80478318 80478539 + 1.75 NA intron (NM_001282599, intron 3 of 11) L1PB3|LINE|L1 165049 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 284.5-6 chr10 89159392 89159891 + 1.75 NA Intergenic Intergenic 47676 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 265.5-14 chr18 5351586 5351894 + 1.75 NA Intergenic L2a|LINE|L2 -54687 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 260.75-3 chr12 85509481 85509781 + 1.75 NA Intergenic L2a|LINE|L2 229411 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 237-16 chr2 31606476 31606660 + 1.75 NA Intergenic MER77B|LTR|ERVL -25630 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 316.5-15 chr8 65605690 65606015 + 1.75 NA intron (NM_001286702, intron 3 of 5) intron (NM_001286702, intron 3 of 5) 28325 NM_018120 55156 Hs.269542 NM_018120 ENSG00000104442 ARMC1 Arcp armadillo repeat containing 1 protein-coding 259.75-6 chr11 103198893 103199185 + 1.75 NA intron (NM_001377, intron 48 of 88) intron (NM_001377, intron 48 of 88) 89613 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 222-6 chr11 25137709 25137876 + 1.75 NA Intergenic Intergenic 640739 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 285.5-3 chr12 42291893 42292155 + 1.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR 31835 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 347.25-10 chr9 113200342 113200725 + 1.75 NA intron (NM_015258, intron 6 of 27) intron (NM_015258, intron 6 of 27) 20744 NM_015258 23307 Hs.522351 NM_015258 ENSG00000119321 FKBP15 FKBP133|KIAA0674|PPP1R76 FKBP prolyl isomerase 15 protein-coding 222.75-8 chr11 32646741 32646991 + 1.75 NA intron (NM_001008391, intron 12 of 17) HAL1|LINE|L1 63035 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 274.75-8 chr17 57921698 57921870 + 1.75 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) -18395 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 304.5-15 chr5 10100603 10100865 + 1.75 NA Intergenic L1M7|LINE|L1 149154 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 288-10 chr2 159763816 159764077 + 1.75 NA intron (NM_001282806, intron 7 of 7) intron (NM_001282806, intron 7 of 7) 29982 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 151.5-32 chr16 51268807 51268950 + 1.75 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -117606 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 291-16 chr8 117272799 117273052 + 1.75 NA Intergenic Intergenic 137930 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 321.5-9 chr6 121034344 121034632 + 1.75 NA Intergenic L1ME3|LINE|L1 299992 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 287.75-5 chr2 229109297 229109752 + 1.75 NA intron (NM_001330157, intron 1 of 1) MamRTE1|LINE|RTE-BovB 122568 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 277.75-2 chr1 215510695 215510969 + 1.75 NA Intergenic L1MA4|LINE|L1 -56472 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 191.5-3 chr1 48895960 48896288 + 1.75 NA intron (NM_001323575, intron 5 of 12) MIRc|SINE|MIR -119155 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 310.25-3 chr12 53557797 53558047 + 1.75 NA intron (NR_073163, intron 2 of 12) MER33|DNA|hAT-Charlie 43938 NR_046221 100652999 Hs.633602 NR_046221 ENSG00000257550 LOC100652999 - uncharacterized LOC100652999 ncRNA 334.5-12 chr8 137724533 137724888 + 1.75 NA Intergenic L1MB7|LINE|L1 -311122 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 270.75-10 chr2 77403801 77404036 + 1.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 118458 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 178.25-60 chr8 4535098 4535242 + 1.75 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 459744 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 230.75-6 chr12 64461001 64461276 + 1.75 NA intron (NM_013254, intron 3 of 20) intron (NM_013254, intron 3 of 20) 9018 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 207.5-20 chr16 58553224 58553419 + 1.75 NA intron (NM_206999, intron 22 of 30) intron (NM_206999, intron 22 of 30) -4688 NR_002978 677827 Hs.688592 NR_002978 ENSG00000207493 SNORA46 ACA46 small nucleolar RNA, H/ACA box 46 snoRNA 343.75-4 chr12 101592890 101593248 + 1.75 NA Intergenic Intergenic -1862 NM_206819 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 260.5-7 chr12 122565545 122565855 + 1.75 NA intron (NM_014708, intron 20 of 63) AluJb|SINE|Alu 38451 NM_014708 9735 Hs.300559 NM_014708 ENSG00000184445 KNTC1 ROD kinetochore associated 1 protein-coding 206-20 chr21 20607664 20607856 + 1.75 NA Intergenic L1MA1|LINE|L1 195348 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 362.25-3 chr10 56215202 56215589 + 1.75 NA Intergenic AluSx|SINE|Alu 145864 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 308.75-4 chr2 67369034 67369387 + 1.75 NA Intergenic L1ME1|LINE|L1 -28123 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 284.75-10 chr3 124747017 124747204 + 1.75 NA non-coding (NR_033434, exon 5 of 5) non-coding (NR_033434, exon 5 of 5) 14671 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 334.5-6 chr12 97900934 97901294 + 1.75 NA Intergenic L2a|LINE|L2 38007 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 321-7 chr2 166624991 166625236 + 1.75 NA Intergenic L1PREC2|LINE|L1 -138142 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 377.75-2 chr11 103474180 103474433 + 1.75 NA intron (NM_001377, intron 88 of 88) intron (NM_001377, intron 88 of 88) 364880 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 157.75-61 chr5 22350602 22350729 + 1.75 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -136815 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 293-8 chr14 81897188 81897499 + 1.75 NA Intergenic L1MA8|LINE|L1 -154205 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 305-17 chr4 99644055 99644366 + 1.75 NA intron (NM_001354435, intron 1 of 1) MIR|SINE|MIR 10469 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 173-44 chr5 31414641 31414861 + 1.75 NA intron (NM_013235, intron 29 of 34) intron (NM_013235, intron 29 of 34) 117342 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 283-5 chr13 83958886 83959143 + 1.75 NA Intergenic Intergenic -76540 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 217.5-13 chr15 63063505 63063741 + 1.75 NA intron (NM_001018006, intron 8 of 8) intron (NM_001018006, intron 8 of 8) -14236 NR_147233 111064646 Hs.602995 NR_147233 TPM1-AS TPM1-AS1 TPM1 antisense RNA ncRNA 332.75-4 chr2 62895373 62895748 + 1.75 NA intron (NM_001142615, intron 10 of 22) intron (NM_001142615, intron 10 of 22) 152151 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 241.5-11 chr14 62738597 62738774 + 1.75 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 306773 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 189.5-45 chr4 60705511 60705689 + 1.75 NA Intergenic HAL1|LINE|L1 -217019 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 226.25-15 chr2 36858747 36858983 + 1.75 NA intron (NM_003162, intron 13 of 17) L2b|LINE|L2 107671 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 244.75-14 chr20 51420147 51420385 + 1.75 NA intron (NM_012340, intron 9 of 10) L1MC5|LINE|L1 32711 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 265.25-19 chr2 215033375 215033583 + 1.75 NA intron (NR_103740, intron 9 of 54) intron (NR_103740, intron 9 of 54) -1393 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 192.5-22 chr16 8017205 8017362 + 1.75 NA Intergenic L1MD2|LINE|L1 572555 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 208.25-3 chr1 111823693 111823932 + 1.75 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 33093 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 275-4 chr14 49176868 49177153 + 1.75 NA Intergenic L1MA8|LINE|L1 409370 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 383-7 chr4 57511131 57511481 + 1.75 NA Intergenic L1PREC2|LINE|L1 85434 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 172.25-37 chr2 165554359 165554483 + 1.75 NA intron (NM_001172173, intron 3 of 6) L2a|LINE|L2 -17915 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 277.25-19 chr3 97069233 97069445 + 1.75 NA intron (NM_001080448, intron 3 of 17) Tigger2a|DNA|TcMar-Tigger 254745 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 274.75-10 chr18 72487785 72488060 + 1.75 NA Intergenic Intergenic 56420 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 134.5-23 chr14 39368575 39368651 + 1.75 NA intron (NM_001354155, intron 22 of 22) (TT)n|Simple_repeat|Simple_repeat 63887 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 251.5-17 chr2 57407018 57407189 + 1.75 NA Intergenic Intergenic -500548 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 294-4 chr12 33868755 33869041 + 1.75 NA Intergenic L2a|LINE|L2 -153598 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 407 chr15 84813757 84814225 + 1.75 NA Intergenic L2c|LINE|L2 -2689 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 261.25-6 chr3 76478964 76479288 + 1.75 NA Intergenic Intergenic -560973 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 281 chr10 10329600 10329821 + 1.75 NA Intergenic Intergenic 132639 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 225.75-21 chr4 154581227 154581409 + 1.75 NA Intergenic Intergenic 9424 NM_021871 2243 Hs.351593 NM_000508 ENSG00000171560 FGA Fib2 fibrinogen alpha chain protein-coding 369.5-5 chr8 133639449 133639734 + 1.75 NA Intergenic AluSp|SINE|Alu 44475 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 115.5-96 chr8 90617809 90617879 + 1.75 NA Intergenic LTR8A|LTR|ERV1 -11781 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 188.25-44 chr4 73197057 73197214 + 1.75 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 25922 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 288.25-7 chr2 114202256 114202478 + 1.75 NA Intergenic Intergenic -222383 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 263.5-4 chr10 92032806 92033091 + 1.75 NA Intergenic Intergenic 109178 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 352.25 chr4 149076948 149077349 + 1.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -77147 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 263.25-6 chr2 144097769 144097991 + 1.75 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 113699 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 143-69 chr7 81130145 81130235 + 1.75 NA Intergenic L1PB4|LINE|L1 -207801 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 246.25-9 chr18 2687003 2687252 + 1.75 NA intron (NM_015295, intron 5 of 47) L1MEd|LINE|L1 31240 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 334.25-7 chr5 43763159 43763381 + 1.75 NA Intergenic L1M3|LINE|L1 -160040 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 159.25-36 chr2 67425494 67425587 + 1.75 NA Intergenic Intergenic 28207 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 196.5-46 chr2 118094940 118095092 + 1.75 NA intron (NM_001321331, intron 2 of 5) intron (NM_001321331, intron 2 of 5) 6466 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 287.25-13 chr3 187674401 187674631 + 1.75 NA Intergenic Intergenic -4122 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 203.5-55 chrX 91452700 91452944 + 1.75 NA Intergenic MER57A-int|LTR|ERV1 -17823 NR_110659 102724167 Hs.571694 NR_110659 ENSG00000234161 PABPC5-AS1 CXorf46 PABPC5 antisense RNA 1 ncRNA 269.5-16 chr2 117275986 117276375 + 1.75 NA Intergenic L1M2|LINE|L1 -538511 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 206.25-37 chr6 154009040 154009184 + 1.75 NA Intergenic L2a|LINE|L2 -1384 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 305.25 chr1 207897044 207897226 + 1.75 NA intron (NM_001025109, intron 4 of 7) intron (NM_001025109, intron 4 of 7) 13990 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 280.75-12 chr5 114105795 114106024 + 1.75 NA Intergenic Intergenic -256161 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 259.75-17 chr4 58980269 58980492 + 1.75 NA Intergenic L1MD|LINE|L1 -3902 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 204.5-11 chr12 74118000 74118160 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR 174551 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 129-49 chr4 55425688 55425769 + 1.75 NA non-coding (NR_073070, exon 7 of 7) non-coding (NR_073070, exon 7 of 7) 29771 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 300.5-14 chr21 35581461 35581681 + 1.75 NA promoter-TSS (NR_073512) promoter-TSS (NR_073512) -807 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 447-3 chr21 17051931 17052286 + 1.75 NA Intergenic Intergenic -386782 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 268.5-30 chr7 69515249 69515495 + 1.75 NA Intergenic L1ME3A|LINE|L1 82252 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 159.75-34 chr3 10372037 10372185 + 1.75 NA intron (NM_001001331, intron 11 of 22) intron (NM_001001331, intron 11 of 22) 22451 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 291.5-19 chr9 135949421 135949671 + 1.75 NA intron (NM_016172, intron 3 of 9) intron (NM_016172, intron 3 of 9) 11827 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 241.75-12 chr2 48027287 48027518 + 1.75 NA Intergenic L1MEd|LINE|L1 -121609 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 271.5-13 chr20 17321111 17321282 + 1.75 NA intron (NM_002594, intron 2 of 11) MIRb|SINE|MIR 94156 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 198.5-27 chr2 124108031 124108344 + 1.75 NA intron (NM_130773, intron 1 of 23) MER4A|LTR|ERV1 82900 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 387.75-5 chr8 71246418 71246772 + 1.75 NA intron (NM_001370335, intron 14 of 20) intron (NM_001370335, intron 14 of 20) 110111 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 218.5-43 chr6 39247859 39248060 + 1.75 NA Intergenic MIR|SINE|MIR -18484 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 183.75-55 chr8 81977274 81977457 + 1.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -135079 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 233.5-52 chr8 51767086 51767243 + 1.75 NA intron (NM_144651, intron 1 of 22) L1M4|LINE|L1 42281 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 257.25-10 chr16 88772824 88773026 + 1.75 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 12295 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|LMPHM6|Mib piezo type mechanosensitive ion channel component 1 protein-coding 141.75 chr1 53353011 53353130 + 1.75 NA Intergenic L1ME4b|LINE|L1 24837 NR_131923 105378732 Hs.118609 NR_131923 ENSG00000225675 LINC01771 - long intergenic non-protein coding RNA 1771 ncRNA 277.25 chr1 7869893 7870203 + 1.75 NA Intergenic Intergenic -16557 NM_021995 10911 Hs.715862 NM_006786 ENSG00000049247 UTS2 PRO1068|U-II|UCN2|UII urotensin 2 protein-coding 230.75-5 chr12 12974133 12974529 + 1.75 NA TTS (NM_015987) TTS (NM_015987) -5506 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 173.25-56 chr5 147361691 147361854 + 1.75 NA intron (NM_001112724, intron 8 of 12) intron (NM_001112724, intron 8 of 12) 91920 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 291.75-7 chr17 81171455 81171653 + 1.75 NA intron (NM_001354639, intron 2 of 6) AluY|SINE|Alu -5333 NM_001080395 9625 Hs.514575 NM_004920 ENSG00000181409 AATK AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP apoptosis associated tyrosine kinase protein-coding 199-11 chr11 57111166 57111485 + 1.75 NA Intergenic MIR|SINE|MIR -70628 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 175.75-14 chr17 81712608 81712878 + 1.75 NA intron (NM_012140, intron 1 of 10) intron (NM_012140, intron 1 of 10) 459 NM_012140 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 200-9 chr11 86633045 86633261 + 1.75 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 39045 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 221.5-49 chr8 91456547 91456711 + 1.75 NA Intergenic Intergenic 207310 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 233.5-31 chr3 3589942 3590356 + 1.75 NA Intergenic MER57E1|LTR|ERV1 -209282 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 235.75-8 chr11 58765868 58766078 + 1.75 NA Intergenic Intergenic -33999 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 224.25-16 chr15 85881115 85881374 + 1.75 NA Intergenic Intergenic 55609 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 216-36 chr6 147692020 147692285 + 1.75 NA Intergenic Intergenic 183462 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 262.25-19 chr5 25537429 25537690 + 1.75 NA Intergenic L3|LINE|CR1 346606 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 330.75-5 chr2 31910103 31910455 + 1.75 NA intron (NM_001137602, intron 4 of 7) L1MC2|LINE|L1 100385 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 175.25-43 chr5 77293249 77293389 + 1.75 NA intron (NM_001029853, intron 1 of 20) L1M5|LINE|L1 82639 NM_003719 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 254.25-5 chr10 11962796 11963086 + 1.75 NA intron (NM_080599, intron 11 of 21) L2c|LINE|L2 -68231 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 157.5-68 chr3 103836100 103836268 + 1.75 NA Intergenic L1MA4|LINE|L1 -312068 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 469.75 chr14 64203194 64203712 + 1.75 NA intron (NM_015180, intron 100 of 114) intron (NM_015180, intron 100 of 114) -10691 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 323.25-12 chr6 70363654 70363928 + 1.75 NA Intergenic LTR78B|LTR|ERV1 -30411 NR_125857 101928353 NR_125857 EVADR - uncharacterized LOC101928353 ncRNA 213.25-2 chr1 172114811 172114994 + 1.75 NA intron (NR_146559, intron 14 of 20) intron (NR_146559, intron 14 of 20) -23906 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 259.5-6 chr10 70907097 70907340 + 1.75 NA Intergenic MIR3|SINE|MIR -18653 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 237.25-12 chr14 74660831 74661027 + 1.75 NA TTS (NM_001039479) TTS (NM_001039479) -48692 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 352-9 chr7 73459625 73459864 + 1.75 NA intron (NM_001370402, intron 12 of 18) intron (NM_001370402, intron 12 of 18) 25966 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 139.75-30 chr14 96842350 96842441 + 1.75 NA intron (NM_003384, intron 3 of 12) intron (NM_003384, intron 3 of 12) 45013 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 132-55 chr4 79717512 79717647 + 1.75 NA Intergenic L1ME2|LINE|L1 -109892 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 153-24 chr21 23342373 23342474 + 1.75 NA Intergenic Intergenic 42412 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 316.25 chr1 165391308 165391601 + 1.75 NA Intergenic L1ME3C|LINE|L1 33530 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 213.25-16 chr16 57576779 57577003 + 1.75 NA 3' UTR (NM_001318481, exon 11 of 11) 3' UTR (NM_001318481, exon 11 of 11) 34248 NM_153837 221188 Hs.187884 NM_153837 ENSG00000159618 ADGRG5 GPR114|PGR27 adhesion G protein-coupled receptor G5 protein-coding 197.75-55 chrX 78827820 78828061 + 1.75 NA Intergenic Intergenic 73309 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 208-13 chr19 46125926 46126136 + 1.75 NA Intergenic Intergenic -1343 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 350.5-7 chr6 129756479 129756698 + 1.75 NA Intergenic Intergenic -46411 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 177.25-33 chr3 44155161 44155367 + 1.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR 41052 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 177.75-55 chr7 12338909 12339061 + 1.75 NA intron (NM_001135924, intron 24 of 28) intron (NM_001135924, intron 24 of 28) 64880 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 264.25-15 chr6 42275568 42275890 + 1.75 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -57868 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 212.75-30 chr6 50416898 50417108 + 1.75 NA Intergenic AluSx|SINE|Alu -296541 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 246-37 chr8 119052402 119052612 + 1.75 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -14740 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 288.25-16 chr7 29514601 29514805 + 1.75 NA TTS (NM_004067) TTS (NM_004067) 30887 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 234.75-28 chr22 40457487 40457693 + 1.75 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 5850 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 314.75-6 chr20 20268829 20269074 + 1.75 NA intron (NM_015585, intron 21 of 26) intron (NM_015585, intron 21 of 26) -99153 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 262.5-21 chr2 134018616 134018885 + 1.75 NA Intergenic AluSp|SINE|Alu -101185 NM_001371457 140.75-21 chr15 67406568 67406761 + 1.75 NA non-coding (NR_040051, exon 6 of 6) non-coding (NR_040051, exon 6 of 6) 114309 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 470.75 chr2 58614001 58614386 + 1.75 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 93440 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 188.25-8 chr12 2155984 2156230 + 1.75 NA intron (NM_199460, intron 3 of 49).2 L1ME3E|LINE|L1 67374 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 274-26 chr7 106263620 106263830 + 1.75 NA intron (NM_005746, intron 6 of 10) intron (NM_005746, intron 6 of 10) 21258 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 269.75-3 chr12 40600808 40601064 + 1.75 NA Intergenic Intergenic -91503 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 222-12 chr14 59420613 59420823 + 1.75 NA Intergenic Intergenic 44662 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 144.5-72 chr3 70589199 70589297 + 1.75 NA Intergenic L1MEg2|LINE|L1 -276610 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 280.75-16 chr8 102152404 102152578 + 1.75 NA Intergenic LTR16D1|LTR|ERVL 27059 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 170-3 chr10 107169620 107169784 + 1.75 NA Intergenic Intergenic -4996 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 261.75-8 chr14 73692361 73692547 + 1.75 NA intron (NM_001201366, intron 8 of 8) AluSq|SINE|Alu 21930 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 458 chr18 50838871 50839144 + 1.75 NA Intergenic MER112|DNA|hAT-Charlie -13627 NM_001127174 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 228-50 chr9 100086153 100086401 + 1.75 NA intron (NM_015051, intron 1 of 11) intron (NM_015051, intron 1 of 11) 12723 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 253 chr1 30590884 30591088 + 1.75 NA Intergenic L2a|LINE|L2 -127786 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 183.5-29 chr16 87223513 87223696 + 1.75 NA intron (NR_110939, intron 2 of 2) intron (NR_110939, intron 2 of 2) 11489 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 298-22 chr8 11306022 11306192 + 1.75 NA intron (NM_015458, intron 4 of 9).2 intron (NM_015458, intron 4 of 9).2 21291 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 279.75-12 chr4 44902071 44902375 + 1.75 NA Intergenic L1ME1|LINE|L1 -175589 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 200.5-54 chr6 14711957 14712179 + 1.75 NA Intergenic L2a|LINE|L2 -426614 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 245.25-28 chr8 84852569 84852788 + 1.75 NA intron (NM_001287244, intron 4 of 7) MIR3|SINE|MIR 146751 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 267-26 chr9 80059394 80059710 + 1.75 NA Intergenic Intergenic 84529 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 180-19 chr14 45007429 45007616 + 1.75 NA intron (NR_131765, intron 5 of 19) intron (NR_131765, intron 5 of 19) 45332 NM_001308120 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 321.75-21 chr8 69746499 69747046 + 1.75 NA intron (NM_030958, intron 4 of 9) MER74B|LTR|ERVL 86397 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 411-4 chr2 181323578 181323971 + 1.75 NA intron (NR_130784, intron 3 of 4) L2|LINE|L2 -18122 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 370.25-6 chr6 51284962 51285346 + 1.75 NA Intergenic Intergenic -336716 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 356.5 chr1 192351265 192351624 + 1.75 NA intron (NM_001039152, intron 3 of 4) intron (NM_001039152, intron 3 of 4) 34452 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 164.5-31 chr17_KI270730v1_random 91077 91222 + 1.75 NA NA (GGAAT)n|Simple_repeat|Simple_repeat NA NA 140.25-16 chr12 62268030 62268137 + 1.75 NA intron (NR_147080, intron 1 of 19) intron (NR_147080, intron 1 of 19) 7679 NM_001351163 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 279.75-9 chr18 12807209 12807523 + 1.75 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 33596 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 192.75 chr1 114995442 114995778 + 1.75 NA TTS (NR_104211) TTS (NR_104211) -34214 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 234.5-2 chr10 44445543 44445797 + 1.75 NA Intergenic MER1B|DNA|hAT-Charlie -60573 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 163.75-40 chr3 40331771 40331927 + 1.75 NA Intergenic Intergenic 22142 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 191.75-16 chr17 2455965 2456209 + 1.75 NA intron (NM_024086, intron 6 of 9) intron (NM_024086, intron 6 of 9) -40651 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 303-4 chr15 76726933 76727199 + 1.75 NA intron (NR_148227, intron 17 of 32) intron (NR_148227, intron 17 of 32) 134878 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 245-16 chr2 161617302 161617481 + 1.75 NA Intergenic MIR|SINE|MIR -6944 NM_001354450 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 285.5-18 chr7 38811311 38811594 + 1.75 NA intron (NM_014396, intron 7 of 28) intron (NM_014396, intron 7 of 28) 97739 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 247.25-10 chr18 10244770 10244990 + 1.75 NA Intergenic Intergenic 169490 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 376.5-6 chr7 16272434 16272781 + 1.75 NA intron (NM_001101426, intron 6 of 9) intron (NM_001101426, intron 6 of 9) 62121 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 193.5-43 chr3 100589223 100589360 + 1.75 NA Intergenic Intergenic -20310 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 188.75-9 chr13 53402336 53402443 + 1.75 NA Intergenic Intergenic -250489 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 170.25-58 chr7 92963478 92963613 + 1.75 NA Intergenic Intergenic -126918 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 212.75-2 chr1 187301588 187301745 + 1.75 NA intron (NR_126347, intron 1 of 3) L1ME3A|LINE|L1 -141962 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 316.5-11 chr21 20474426 20474665 + 1.75 NA Intergenic Intergenic -215860 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 243.5-31 chr9 23793430 23793704 + 1.75 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 27742 NM_001351471 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 233.5-14 chr12 119492441 119492634 + 1.75 NA intron (NM_178499, intron 5 of 13) intron (NM_178499, intron 5 of 13) -101237 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 419 chr1 154013319 154013887 + 1.75 NA intron (NM_001159484, intron 33 of 37) AluSz|SINE|Alu 22841 NM_001030 6232 Hs.546291 NM_001030 ENSG00000177954 RPS27 DBA17|MPS-1|MPS1|S27 ribosomal protein S27 protein-coding 187-32 chr20 50306166 50306313 + 1.75 NA intron (NR_034124, intron 2 of 4) L2a|LINE|L2 13519 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 155.75-10 chr10 101385792 101385974 + 1.75 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 31718 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 191.5-39 chr3 2091547 2091703 + 1.75 NA Intergenic L1M4b|LINE|L1 -7178 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 162-31 chr3 9410497 9410736 + 1.75 NA intron (NM_001080517, intron 1 of 22) L1MC5|LINE|L1 12916 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 198-9 chr11 91259021 91259150 + 1.75 NA Intergenic Intergenic -389883 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 178.75-8 chr12 133120774 133120892 + 1.75 NA exon (NM_001277291, exon 2 of 2) exon (NM_001277291, exon 2 of 2) 9640 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 222-17 chr15 80661741 80661933 + 1.75 NA Intergenic L1MA7|LINE|L1 -33473 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 306.5-6 chr2 88598520 88598827 + 1.75 NA intron (NM_004836, intron 2 of 16) L1MC4|LINE|L1 26256 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 187.75-55 chr8 132291532 132291642 + 1.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 155675 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 273.25-14 chr5 116378830 116379196 + 1.75 NA Intergenic Intergenic -4443 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 226.75-19 chr4 100269643 100269840 + 1.75 NA Intergenic Intergenic -79273 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 426-3 chr10 105277882 105278324 + 1.75 NA Intergenic AluSq2|SINE|Alu 542230 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 424.25-3 chr4 42566685 42566948 + 1.75 NA intron (NM_001105529, intron 14 of 35) MIRb|SINE|MIR 90289 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 281.25-11 chr5 17801797 17802090 + 1.75 NA Intergenic Intergenic -5331 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 277.75-14 chr6 120899796 120900128 + 1.75 NA Intergenic Intergenic 434518 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 177.75-47 chr6 24557604 24557731 + 1.75 NA intron (NM_001350410, intron 18 of 21) L1ME4a|LINE|L1 25560 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 290-14 chr5 35652757 35653075 + 1.75 NA intron (NM_144722, intron 6 of 9) intron (NM_144722, intron 6 of 9) 35053 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 271.75-3 chr2 159161852 159162145 + 1.75 NA intron (NM_001350063, intron 6 of 24) intron (NM_001350063, intron 6 of 24) -24837 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 259.25-6 chr19 49294682 49294932 + 1.75 NA intron (NM_014037, intron 7 of 11) intron (NM_014037, intron 7 of 11) 14061 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 281.25-6 chr16 35386818 35386997 + 1.75 NA intron (NR_027080, intron 6 of 6) intron (NR_027080, intron 6 of 6) 23376 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 347.75-4 chr2 71380898 71381406 + 1.75 NA intron (NM_001252613, intron 10 of 27) intron (NM_001252613, intron 10 of 27) 49370 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 269.25-18 chr4 169122350 169122725 + 1.75 NA intron (NM_020870, intron 6 of 11) intron (NM_020870, intron 6 of 11) -112282 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 211.75-10 chr11 79763505 79763735 + 1.75 NA Intergenic L2b|LINE|L2 -322590 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 294.5-9 chr15 37526069 37526273 + 1.75 NA Intergenic MIR|SINE|MIR -408436 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 249.25-25 chr8 78626435 78626695 + 1.75 NA Intergenic L1MA4|LINE|L1 -39524 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 142.5-18 chr11 112591601 112591711 + 1.75 NA Intergenic LTR102_Mam|LTR|ERVL -35854 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 323.75-4 chr17 77969664 77970034 + 1.75 NA Intergenic Intergenic -34388 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 259-6 chr11 81630047 81630266 + 1.75 NA Intergenic MIRb|SINE|MIR 260680 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 192.75-6 chr11 90887906 90888133 + 1.75 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -18817 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 231.75-29 chr7 96671644 96671796 + 1.75 NA intron (NR_163952, intron 2 of 6) L2c|LINE|L2 -7382 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 339.75-13 chr8 116819129 116819573 + 1.75 NA Intergenic Intergenic 52827 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 223.25-33 chr8 139562824 139563062 + 1.75 NA Intergenic L1MEd|LINE|L1 140180 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 285.5-6 chr2 17677837 17678085 + 1.75 NA intron (NM_024624, intron 24 of 26) intron (NM_024624, intron 24 of 26) 75849 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 350-3 chr20 11894976 11895294 + 1.75 NA intron (NM_001282550, intron 1 of 4) L1MC|LINE|L1 2642 NM_001282550 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 332-10 chr3 37324385 37324668 + 1.75 NA exon (NM_002078, exon 14 of 24) exon (NM_002078, exon 14 of 24) -61743 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 267-23 chr5 152492318 152492508 + 1.75 NA Intergenic L1MC4|LINE|L1 -87134 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 328.5-9 chr2 21084883 21085232 + 1.75 NA Intergenic Intergenic -38929 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 404 chr1 223218261 223218683 + 1.75 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -75224 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 301.75-2 chr1 229046479 229046742 + 1.75 NA Intergenic Intergenic 128191 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 228.25-3 chr1 195251035 195251297 + 1.75 NA Intergenic ERVL-B4-int|LTR|ERVL 837549 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235-4 chr10 114271070 114271296 + 1.75 NA intron (NM_001272046, intron 5 of 13) L2c|LINE|L2 31569 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 290-4 chr12 17389838 17390163 + 1.75 NA Intergenic AluSq2|SINE|Alu 199078 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 328.5-3 chr10 103675423 103675776 + 1.75 NA intron (NM_014631, intron 6 of 13) MIR3|SINE|MIR 2616 NM_001365079 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 248-19 chr5 83364072 83364343 + 1.75 NA Intergenic Intergenic -107467 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 414.25-2 chr6 12648378 12648826 + 1.75 NA Intergenic Intergenic -63198 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 173.75-20 chr2 48002739 48002892 + 1.75 NA Intergenic Intergenic -97022 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 240.75-16 chr2 21622583 21622751 + 1.75 NA Intergenic HAL1|LINE|L1 87985 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 170.5-45 chr20 49062703 49062874 + 1.75 NA intron (NM_001362762, intron 2 of 24) intron (NM_001362762, intron 2 of 24) 16476 NM_001316 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 345.75-2 chr2 19564307 19564682 + 1.75 NA Intergenic Intergenic -205871 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 150-80 chr8 128302389 128302525 + 1.75 NA Intergenic Intergenic 152341 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 355.5-11 chr4 114340236 114340458 + 1.75 NA Intergenic L1ME1|LINE|L1 -258055 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 452.75 chr8 123874299 123874760 + 1.75 NA intron (NM_001039112, intron 1 of 40) L2a|LINE|L2 22542 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 141.25-78 chr9 98830439 98830565 + 1.75 NA intron (NM_024642, intron 3 of 9) intron (NM_024642, intron 3 of 9) 22832 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 270.75-15 chr3 106836403 106836811 + 1.75 NA Intergenic LOR1-int|LTR|ERV1 404031 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 372.5-2 chr10 41898659 41899054 + 1.75 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 469189 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 239.25-15 chr2 21511370 21511584 + 1.75 NA Intergenic MER101-int|LTR|ERV1 199175 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 190.75-41 chr5 28381491 28381612 + 1.75 NA Intergenic Intergenic -93886 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 325.25-2 chr1 166589355 166589614 + 1.75 NA Intergenic Intergenic -14432 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 269-15 chr5 133406301 133406468 + 1.75 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 21322 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 279-13 chr2 200870784 200871044 + 1.75 NA TTS (NM_032472) TTS (NM_032472) -6256 NM_004071 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 168-9 chr1 179911566 179911765 + 1.75 NA intron (NM_001267578, intron 8 of 9) MIRc|SINE|MIR 29623 NM_015602 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 356.25 chr10 85150887 85151250 + 1.75 NA Intergenic Intergenic 47837 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 558.25-3 chr14 83227202 83227937 + 1.75 NA Intergenic Intergenic 584937 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 231.25-19 chr19 29188625 29188861 + 1.75 NA Intergenic Intergenic 24408 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 159.75-44 chr4 41040682 41040887 + 1.75 NA intron (NM_001330658, intron 3 of 15) intron (NM_001330658, intron 3 of 15) 173758 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 247.75-4 chr14 51804491 51804769 + 1.75 NA Intergenic Intergenic -55982 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 233.75-20 chr2 190480026 190480418 + 1.75 NA intron (NM_017694, intron 4 of 7) intron (NM_017694, intron 4 of 7) 54500 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 186.75-65 chr9 117179725 117179906 + 1.75 NA intron (NM_001365068, intron 3 of 22) intron (NM_001365068, intron 3 of 22) 1386 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 300-7 chr11 80550924 80551253 + 1.75 NA Intergenic L1ME2z|LINE|L1 211715 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 387.75-3 chr19 30390396 30390677 + 1.75 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 18152 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 297.75-13 chr4 161471523 161471707 + 1.75 NA intron (NM_001128428, intron 12 of 14) L1MB3|LINE|L1 -551118 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 314.25-10 chr6 38677569 38677782 + 1.75 NA intron (NM_006708, intron 5 of 5) AluJr|SINE|Alu 25470 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 313.5-7 chr2 114271508 114271745 + 1.75 NA Intergenic Intergenic -171015 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 189.75-24 chr2 219966275 219966511 + 1.75 NA Intergenic Intergenic -59828 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 189.25-7 chr12 3082013 3082156 + 1.75 NA intron (NM_001168320, intron 1 of 7) L2a|LINE|L2 4705 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 179.5-100 chr9 3756399 3756513 + 1.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 88370 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 277-23 chr5 153564275 153564448 + 1.75 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 72189 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 345.5-4 chr3 105863050 105863275 + 1.75 NA intron (NR_135809, intron 2 of 18) intron (NR_135809, intron 2 of 18) 4429 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 282.75-5 chr14 22709094 22709451 + 1.75 NA Intergenic SATR1|Satellite|Satellite -57416 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 276.25 chr1 232511127 232511465 + 1.75 NA intron (NM_020808, intron 1 of 20) intron (NM_020808, intron 1 of 20) 4312 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 264-31 chr8 119175817 119176100 + 1.75 NA Intergenic L2c|LINE|L2 -32405 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 222.5-19 chr16 47239672 47240005 + 1.75 NA intron (NM_030790, intron 12 of 17) intron (NM_030790, intron 12 of 17) 95770 NR_110903 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 350.25 chr10 64480494 64480820 + 1.75 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -344871 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 267.25-11 chr4 43011937 43012234 + 1.75 NA intron (NM_001080476, intron 2 of 3) L4_B_Mam|LINE|RTE-X 118819 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 403.25 chr11 88305509 88305866 + 1.75 NA intron (NM_001814, intron 4 of 6) intron (NM_001814, intron 4 of 6) 32049 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 195-22 chr15 99045874 99046048 + 1.75 NA Intergenic Charlie7|DNA|hAT-Charlie 31257 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 370.25 chr1 96106784 96107082 + 1.75 NA Intergenic AluJb|SINE|Alu 114865 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 195.5-8 chr1 190949334 190949538 + 1.75 NA Intergenic Intergenic 279062 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 325.75-5 chr2 70752273 70752483 + 1.75 NA intron (NM_017482, intron 1 of 12) MIR|SINE|MIR 15337 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 337.5 chr14 104822888 104823247 + 1.75 NA non-coding (NR_024396, exon 1 of 1) non-coding (NR_024396, exon 1 of 1) 1866 NR_024396 196872 Hs.352220 NR_024396 ENSG00000258701 LINC00638 - long intergenic non-protein coding RNA 638 ncRNA 306.25-8 chr2 167578909 167579116 + 1.75 NA Intergenic Intergenic -239660 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 222.25-9 chr14 69246839 69247000 + 1.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -13239 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 368-7 chr5 174423318 174423559 + 1.75 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 87084 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 246.75-18 chr3 23420015 23420353 + 1.75 NA intron (NM_001370225, intron 3 of 5) L2a|LINE|L2 216857 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 242.5-9 chr17 7461682 7461847 + 1.75 NA 3' UTR (NM_020899, exon 4 of 4) 3' UTR (NM_020899, exon 4 of 4) 16703 NM_000747 1140 Hs.330386 NM_000747 ENSG00000170175 CHRNB1 ACHRB|CHRNB|CMS1D|CMS2A|CMS2C|SCCMS cholinergic receptor nicotinic beta 1 subunit protein-coding 254.5 chr1 10927450 10927638 + 1.75 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat 39143 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 299-12 chr2 200757914 200758256 + 1.75 NA intron (NR_135012, intron 17 of 30) intron (NR_135012, intron 17 of 30) -22908 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 414-3 chr8 50347118 50347534 + 1.75 NA intron (NR_135797, intron 2 of 20) Tigger1|DNA|TcMar-Tigger 183195 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 162-25 chr2 183343654 183343814 + 1.75 NA Intergenic Intergenic 219291 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 377.25-6 chr6 152243197 152243608 + 1.75 NA intron (NM_182961, intron 106 of 145) intron (NM_182961, intron 106 of 145) -58024 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 158.75-4 chr10 13857390 13857526 + 1.75 NA intron (NM_001318336, intron 2 of 23) L1ME4c|LINE|L1 114438 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 173.75-33 chr3 155260190 155260324 + 1.75 NA Intergenic Intergenic 19312 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 261-30 chr3 78881436 78881852 + 1.75 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 137815 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 270.75-12 chr22 27232011 27232246 + 1.75 NA Intergenic Intergenic -7449 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 257.75-12 chr18 63630124 63630409 + 1.75 NA Intergenic Intergenic 13990 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 255.5-8 chr14 71129994 71130182 + 1.75 NA Intergenic LTR38A1|LTR|ERV1 -190388 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 249.75-23 chr6 71702591 71702838 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -183989 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 230-29 chr8 35066233 35066379 + 1.75 NA Intergenic L1MCa|LINE|L1 -169169 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 391.25 chr15 33007727 33008007 + 1.75 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 60307 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 251-35 chr9 77672757 77672932 + 1.75 NA Intergenic Intergenic -24522 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 187.75-9 chr14 40347532 40347714 + 1.75 NA Intergenic Intergenic -607088 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 164-12 chr11 123291797 123291898 + 1.75 NA Intergenic L1MC5a|LINE|L1 -66575 NM_001367420 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 218.5-16 chr16 7429981 7430184 + 1.75 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 97237 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 234.25-23 chr3 98584546 98584962 + 1.75 NA intron (NM_000097, intron 5 of 6) intron (NM_000097, intron 5 of 6) 8857 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 324.25-2 chr17 41477132 41477439 + 1.75 NA intron (NM_002280, intron 6 of 7) intron (NM_002280, intron 6 of 7) 3855 NM_002280 3886 Hs.73082 NM_002280 ENSG00000197079 KRT35 HA5|Ha-5|K35|KRTHA5|hHa5 keratin 35 protein-coding 253.25-16 chr2 73577423 73577616 + 1.75 NA intron (NM_015120, intron 16 of 22) L1MB8|LINE|L1 64903 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 291.75-2 chr11 13353485 13353788 + 1.75 NA intron (NM_001351816, intron 3 of 19) AluSz|SINE|Alu 75909 NM_001351811 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 389.75 chr1 105386233 105386685 + 1.75 NA Intergenic Intergenic 232476 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 274.25-14 chr6 124744605 124744897 + 1.75 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -217794 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 197.25-41 chr22 35261465 35261601 + 1.75 NA intron (NM_001362972, intron 1 of 9) intron (NM_001362972, intron 1 of 9) 4040 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 291-7 chr14 86403128 86403362 + 1.75 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 468567 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 132.75-41 chr15 63532382 63532470 + 1.75 NA intron (NR_046341, intron 2 of 15) intron (NR_046341, intron 2 of 15) 27833 NR_046342 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 289.5-15 chr2 201403338 201403589 + 1.75 NA intron (NM_015049, intron 3 of 15) intron (NM_015049, intron 3 of 15) -46065 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 206.25-35 chr6 80340489 80340635 + 1.75 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 233891 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 204.5-21 chr17 46925516 46925895 + 1.75 NA intron (NM_001363851, intron 1 of 5) intron (NM_001363851, intron 1 of 5) 2545 NM_001321133 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 311.75-11 chr9 25553456 25553653 + 1.75 NA Intergenic Intergenic 125304 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 180.75-44 chr4 2254489 2254647 + 1.75 NA intron (NM_006454, intron 3 of 5) L1M2|LINE|L1 -4412 NR_039964 100616358 NR_039964 ENSG00000284276 MIR4800 mir-4800 microRNA 4800 ncRNA 262.75-6 chr13 93211066 93211253 + 1.75 NA Intergenic L1MA8|LINE|L1 -15648 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 260-4 chr11 104357242 104357447 + 1.75 NA Intergenic Intergenic -193197 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 300.5-16 chr3 89642323 89642579 + 1.75 NA Intergenic L1MA3|LINE|L1 534830 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 188.5-43 chr5 22790284 22790413 + 1.75 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 62996 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 146.5-82 chr7 29464121 29464340 + 1.75 NA intron (NM_001293072, intron 6 of 12) MIR|SINE|MIR -15482 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 326.75-2 chr10 13550556 13550896 + 1.75 NA Intergenic LTR16A|LTR|ERVL -21712 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 178.5-83 chr8 85091008 85091124 + 1.75 NA Intergenic A-rich|Low_complexity|Low_complexity -16172 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 259-23 chr3 134923856 134924224 + 1.75 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 128780 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 213.75-7 chr1 172765825 172766035 + 1.75 NA Intergenic MLT1J1|LTR|ERVL-MaLR 106827 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 338.5-9 chr5 74231399 74231751 + 1.75 NA Intergenic MLT1G3|LTR|ERVL-MaLR 76750 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 263.75 chr12 61477768 61477998 + 1.75 NA Intergenic Intergenic 714956 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 349.25-6 chr6 158391557 158391944 + 1.75 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 68768 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 220.25-22 chr2 163593736 163593963 + 1.75 NA Intergenic Intergenic 142159 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 268.5-10 chr14 63020311 63020566 + 1.75 NA intron (NM_139318, intron 1 of 10) L1ME2|LINE|L1 25020 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 140.5-81 chr5 31997333 31997424 + 1.75 NA intron (NM_178140, intron 4 of 24) intron (NM_178140, intron 4 of 24) -61219 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 272.5-23 chr8 20161173 20161510 + 1.75 NA intron (NM_001142324, intron 10 of 15) MER2|DNA|TcMar-Tigger 21795 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 138.5-76 chr4 17223796 17223890 + 1.75 NA Intergenic MIRb|SINE|MIR -37786 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 175.25-53 chr7 106386167 106386291 + 1.75 NA Intergenic Intergenic -101246 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 284-7 chr12 4564907 4565357 + 1.75 NA intron (NM_001371301, intron 1 of 14) intron (NM_001371301, intron 1 of 14) 2924 NM_001371301 373.75-5 chr7 47486601 47486834 + 1.75 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -21914 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 227.5 chr1 44348664 44348809 + 1.75 NA intron (NM_001301699, intron 1 of 7) intron (NM_001301699, intron 1 of 7) 6521 NM_024066 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 145.25-77 chr7 96917746 96917894 + 1.75 NA Intergenic MSTD|LTR|ERVL-MaLR -87733 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 226.5-54 chr9 77029254 77029387 + 1.75 NA Intergenic AluSq2|SINE|Alu 9665 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 173.25-19 chr15 79819434 79819567 + 1.75 NA Intergenic Intergenic 77497 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 115.25-92 chr8 83091172 83091252 + 1.75 NA Intergenic Intergenic 179108 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 293.25-9 chr2 122625351 122625702 + 1.75 NA Intergenic Intergenic 447955 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 252.25-9 chr17 61716169 61716640 + 1.75 NA intron (NM_032043, intron 16 of 19) L1ME1|LINE|L1 -125185 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 163.25-46 chr3 114405837 114406005 + 1.75 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -22279 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 179.5-86 chr7 25122486 25122680 + 1.75 NA 3' UTR (NM_018947, exon 3 of 3) 3' UTR (NM_018947, exon 3 of 3) 2778 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 200.25-42 chr7 3635951 3636118 + 1.75 NA intron (NM_152744, intron 2 of 44) intron (NM_152744, intron 2 of 44) 334782 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 271-18 chr4 47663569 47663968 + 1.75 NA intron (NM_006587, intron 11 of 21) intron (NM_006587, intron 11 of 21) 11099 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 452.5 chr18 47890231 47890745 + 1.75 NA intron (NM_001003652, intron 2 of 10) intron (NM_001003652, intron 2 of 10) 40171 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 236-22 chr2 238668738 238668975 + 1.75 NA Intergenic MLT1E3|LTR|ERVL-MaLR -113357 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 204.25-20 chr16 67127934 67128154 + 1.75 NA intron (NM_001320542, intron 4 of 16) MIRb|SINE|MIR 18103 NM_001320543 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 349.75-9 chr8 140438867 140439260 + 1.75 NA exon (NM_031466, exon 3 of 23) exon (NM_031466, exon 3 of 23) 18681 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 375.5-5 chr4 141751031 141751344 + 1.75 NA Intergenic AluY|SINE|Alu 114604 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 293-13 chr20 39784989 39785190 + 1.75 NA Intergenic Intergenic -219372 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 197.75-19 chr2 88559065 88559207 + 1.75 NA intron (NM_004836, intron 15 of 16) intron (NM_004836, intron 15 of 16) 20416 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 359.25-5 chr2 28291752 28292060 + 1.75 NA intron (NM_199193, intron 11 of 13) intron (NM_199193, intron 11 of 13) 18553 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 178 chr1 86235204 86235423 + 1.75 NA Intergenic Intergenic -78329 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 236-39 chr8 142694682 142694965 + 1.75 NA Intergenic MER41D|LTR|ERV1 -5288 NM_017527 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 246.75-22 chr3 139269401 139269613 + 1.75 NA Intergenic L1M4|LINE|L1 -35985 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 242.25-29 chr8 27791689 27791871 + 1.75 NA intron (NM_001017420, intron 7 of 10) intron (NM_001017420, intron 7 of 10) 17226 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|EFO2p|RBS|hEFO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 173-15 chr13 108285601 108285751 + 1.75 NA intron (NM_001145645, intron 2 of 4) intron (NM_001145645, intron 2 of 4) 16047 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 212-39 chr7 53743553 53743836 + 1.75 NA intron (NR_038371, intron 4 of 5) L1PA15|LINE|L1 68237 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 265.25-2 chr1 99310694 99310942 + 1.75 NA Intergenic Intergenic 46526 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 394.5-4 chr4 111080992 111081236 + 1.75 NA Intergenic Intergenic -220467 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 169.75-34 chr2 146859368 146859517 + 1.75 NA Intergenic MamRep605|LTR?|LTR? 272385 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 225.25-6 chr15 78229003 78229259 + 1.75 NA intron (NM_015162, intron 1 of 13) L2a|LINE|L2 5434 NM_015162 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 257.5-15 chr2 79893366 79893612 + 1.75 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -26906 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 217.75-12 chr15 66859479 66859742 + 1.75 NA Intergenic L1MC5|LINE|L1 96905 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 295 chr1 44001652 44001892 + 1.75 NA intron (NR_048548, intron 7 of 12) AluJb|SINE|Alu 9925 NM_001349129 149473 Hs.632394 NM_152499 ENSG00000159214 CCDC24 - coiled-coil domain containing 24 protein-coding 222.75-12 chr14 60135200 60135479 + 1.75 NA TTS (NM_022495) TTS (NM_022495) 30059 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 217-2 chr1 75791813 75792055 + 1.75 NA intron (NM_004582, intron 6 of 8) intron (NM_004582, intron 6 of 8) 2457 NR_002748 26804 NR_002748 ENSG00000201487 SNORD45B RNU45B|U45b small nucleolar RNA, C/D box 45B snoRNA 310.5-7 chr20 51527244 51527483 + 1.75 NA intron (NM_001258292, intron 1 of 9) L2b|LINE|L2 15356 NM_012340 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 323.5-4 chr11 42742023 42742315 + 1.75 NA Intergenic L1ME3C|LINE|L1 -488479 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 387-7 chr7 131879125 131879542 + 1.75 NA Intergenic MER5B|DNA|hAT-Charlie -30887 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 465.5 chr1 192488296 192488665 + 1.75 NA Intergenic (ATATTC)n|Simple_repeat|Simple_repeat -87293 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 183-18 chr12 77304441 77304575 + 1.75 NA Intergenic Kanga1|DNA|TcMar-Tc2 -238939 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 316-7 chr11 111261968 111262180 + 1.75 NA intron (NM_198498, intron 2 of 4) intron (NM_198498, intron 2 of 4) 16349 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 376-4 chr8 128520897 128521201 + 1.75 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 43630 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 374-2 chr18 67800353 67800675 + 1.75 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 14308 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 148.5-87 chr6 40922028 40922150 + 1.75 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 101191 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 330.75-2 chr12 29902896 29903131 + 1.75 NA Intergenic Intergenic -118254 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 217-23 chr6 52191819 52192050 + 1.75 NA Intergenic Intergenic 5559 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 189.5-7 chr11 47709751 47709889 + 1.75 NA intron (NM_024783, intron 4 of 18).2 AluSx1|SINE|Alu 5549 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 581.25 chr10 61485200 61485913 + 1.75 NA intron (NR_120643, intron 5 of 5) L1M5|LINE|L1 5515 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 208.25-15 chr2 191847705 191847994 + 1.75 NA promoter-TSS (NM_004657) promoter-TSS (NM_004657) -761 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 241-11 chr12 82256485 82256629 + 1.75 NA Intergenic L1MEd|LINE|L1 101830 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 197.25-4 chr1 162139271 162139498 + 1.75 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) -17723 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 171.5-65 chr4 187649420 187649652 + 1.75 NA intron (NR_110436, intron 2 of 2) ERV3-16A3_I-int|LTR|ERVL 23105 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 209.75-44 chr8 110863475 110863682 + 1.75 NA Intergenic LTR16|LTR|ERVL 163855 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 146.75-54 chr6 119628578 119628677 + 1.75 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 78819 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 383.25-3 chr13 32512215 32512539 + 1.75 NA 3' UTR (NM_014887, exon 6 of 6) 3' UTR (NM_014887, exon 6 of 6) -2982 NR_026928 116828 Hs.658751 NR_026928 ENSG00000281026 N4BP2L2-IT2 CG030 N4BPL2 intronic transcript 2 ncRNA 314-8 chr2 40312626 40312825 + 1.75 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 117579 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 333.75-8 chr9 69695569 69695928 + 1.75 NA Intergenic L1MA8|LINE|L1 -23377 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 248.75-8 chr16 89036706 89036939 + 1.75 NA Intergenic Intergenic -56987 NM_001243279 197322 Hs.461727 NM_174917 ENSG00000176715 ACSF3 - acyl-CoA synthetase family member 3 protein-coding 206.5-54 chr8 83169920 83170058 + 1.75 NA Intergenic Intergenic -233769 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 209.25-43 chr7 55285738 55285886 + 1.75 NA Intergenic L1ME4a|LINE|L1 -30177 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 274-18 chr20 15376272 15376504 + 1.75 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 179548 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 261-11 chr13 98331598 98331845 + 1.75 NA intron (NM_005766, intron 2 of 26) MIRb|SINE|MIR 123197 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 508.75-2 chr15 101338773 101339480 + 1.75 NA intron (NM_002570, intron 13 of 21) intron (NM_002570, intron 13 of 21) 4689 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 150-30 chr18 6320016 6320165 + 1.75 NA intron (NM_001365765, intron 1 of 18) L1PB3|LINE|L1 38940 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 303.75-6 chr3 75199842 75200124 + 1.75 NA Intergenic Intergenic -14493 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 187-43 chr4 65276142 65276328 + 1.75 NA Intergenic Intergenic -271735 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 220.25-13 chr12 25905166 25905510 + 1.75 NA Intergenic Intergenic -31259 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 191-4 chr1 182270611 182270749 + 1.75 NA intron (NR_104175, intron 2 of 2) L2a|LINE|L2 43381 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 163-6 chr10 22774849 22774980 + 1.75 NA Intergenic MIRb|SINE|MIR -60336 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 319.75-5 chr4 92579364 92579595 + 1.75 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 275080 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 326.75-3 chr10 34300802 34301123 + 1.75 NA intron (NM_001184790, intron 18 of 22) intron (NM_001184790, intron 18 of 22) 514334 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 281.25-2 chr10 98879203 98879389 + 1.75 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 45272 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 260.5-20 chr2 188753991 188754219 + 1.75 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 36018 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 415.75-2 chr15 75029435 75029867 + 1.75 NA intron (NM_001301103, intron 2 of 3) intron (NM_001301103, intron 2 of 3) 6061 NM_001301103 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 193-42 chr4 138160021 138160252 + 1.75 NA intron (NR_038380, intron 3 of 6) intron (NR_038380, intron 3 of 6) -29451 NR_037866 641365 Hs.435630 NR_037866 ENSG00000248307 LINC00616 - long intergenic non-protein coding RNA 616 ncRNA 192.75-4 chr11 77446725 77446851 + 1.75 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 27275 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 234.75-44 chr8 106473542 106473717 + 1.75 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 25705 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 150.25-57 chr4 110014722 110014859 + 1.75 NA Intergenic L1ME3D|LINE|L1 101907 NM_001178131 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 194.75-24 chr2 198194105 198194336 + 1.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 180877 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 272.75-6 chr10 57339502 57339790 + 1.75 NA Intergenic PABL_A-int|LTR|ERV1 -35087 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 215.75-12 chr2 54276093 54276292 + 1.75 NA intron (NM_001320589, intron 4 of 4) intron (NM_001320589, intron 4 of 4) -19963 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 277.5-14 chr4 85749904 85750289 + 1.75 NA intron (NM_001025616, intron 3 of 9) L2a|LINE|L2 27628 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 272.75-18 chr8 141903563 141903874 + 1.75 NA Intergenic AluSx1|SINE|Alu -117405 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 349.5-7 chr8 79299095 79299414 + 1.75 NA Intergenic Intergenic -32934 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 240.25-6 chr13 76127342 76127606 + 1.75 NA Intergenic L1MA4|LINE|L1 -192342 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 146-40 chr4 85145838 85146060 + 1.75 NA Intergenic MIRb|SINE|MIR 178465 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 184-36 chr3 147916358 147916508 + 1.75 NA Intergenic L1ME4a|LINE|L1 -161726 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 354.75-2 chr12 127912310 127912540 + 1.75 NA intron (NR_126452, intron 3 of 3) intron (NR_126452, intron 3 of 3) -2985 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 346.75-4 chr5 12297994 12298290 + 1.75 NA Intergenic Intergenic -276715 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 253.5-3 chr1 163150582 163151005 + 1.75 NA intron (NM_001195303, intron 2 of 2) intron (NM_001195303, intron 2 of 2) -10882 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 325.5 chr1 17213651 17213909 + 1.75 NA intron (NM_013358, intron 1 of 15).2 intron (NM_013358, intron 1 of 15).2 8652 NM_013358 29943 Hs.412941 NM_013358 ENSG00000142623 PADI1 HPAD10|PAD1|PDI|PDI1 peptidyl arginine deiminase 1 protein-coding 292.75-4 chr15 79790131 79790408 + 1.75 NA Intergenic L1MB3|LINE|L1 106728 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 185.25-28 chr2 157116933 157117086 + 1.75 NA Intergenic L1ME1|LINE|L1 -140696 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 271.75 chr14 86843506 86843821 + 1.75 NA Intergenic L1M5|LINE|L1 -62115 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 162-45 chr5 19935889 19936078 + 1.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -49711 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 128.5-79 chr5 147980248 147980404 + 1.75 NA Intergenic Intergenic -73788 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 191.5-71 chr9 6973015 6973310 + 1.75 NA intron (NR_148680, intron 8 of 21) intron (NR_148680, intron 8 of 21) 215812 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 206-24 chr4 60313205 60313331 + 1.75 NA Intergenic Intergenic -609351 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 338.25-3 chr17 66914921 66915226 + 1.75 NA Intergenic MER5A|DNA|hAT-Charlie -49634 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 178-9 chr11 29696207 29696342 + 1.75 NA Intergenic L1PB1|LINE|L1 77472 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 233.25-9 chr15 24696581 24696777 + 1.75 NA Intergenic MER4A|LTR|ERV1 21285 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 215.25-17 chr2 121958200 121958378 + 1.75 NA Intergenic Intergenic 202638 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 248.25-36 chr9 102306186 102306375 + 1.75 NA Intergenic L1PA16|LINE|L1 -213357 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 282.25-13 chr5 13363672 13363946 + 1.75 NA Intergenic MLT2B2|LTR|ERVL -330923 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 146.25-13 chr11 47099224 47099351 + 1.75 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 77592 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 382-5 chr5 127491827 127492080 + 1.75 NA Intergenic Intergenic -25687 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 212.25-3 chr1 178833394 178833553 + 1.75 NA exon (NM_001286247, exon 8 of 19) exon (NM_001286247, exon 8 of 19) 37604 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 222.75-16 chr15 67930689 67930885 + 1.75 NA Intergenic LTR104_Mam|LTR|Gypsy -90742 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 137.5-126 chr9 106738588 106738716 + 1.75 NA Intergenic Intergenic 122594 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 200.5-50 chr4 110694725 110695053 + 1.75 NA Intergenic L1MCc|LINE|L1 -52766 NM_001204399 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 138.5-81 chr4 123961649 123961786 + 1.75 NA Intergenic L1MEc|LINE|L1 187453 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 177-6 chr11 13949464 13949627 + 1.75 NA Intergenic Intergenic -13178 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 218.75-40 chr8 135230051 135230247 + 1.75 NA Intergenic MIRb|SINE|MIR -3982 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 153.75-10 chr1 242391505 242391643 + 1.75 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 57894 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 163.75-58 chr5 140231067 140231186 + 1.75 NA intron (NM_032412, intron 2 of 2) L1ME3Cz|LINE|L1 55938 NM_032412 84418 Hs.529798 NM_032412 ENSG00000120306 CYSTM1 C5orf32|ORF1-FL49 cysteine rich transmembrane module containing 1 protein-coding 323.5-9 chr3 9335088 9335454 + 1.75 NA Intergenic MER102a|DNA|hAT-Charlie -27783 NM_001114092 25917 Hs.443081 NM_015453 ENSG00000134077 THUMPD3 - THUMP domain containing 3 protein-coding 220-6 chr10 88660433 88660582 + 1.75 NA Intergenic L2a|LINE|L2 -3935 NM_001198828 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 251.25-19 chr2 217111637 217111868 + 1.75 NA Intergenic L1MD3|LINE|L1 -170981 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 203.25-9 chr11 27174683 27174862 + 1.75 NA intron (NR_125767, intron 2 of 4) MIRb|SINE|MIR 43996 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 282.5-15 chr4 15590359 15590834 + 1.75 NA intron (NM_001080522, intron 34 of 37) MIR|SINE|MIR 64761 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 227.5-57 chr8 124803298 124803500 + 1.75 NA Intergenic MIR|SINE|MIR -18586 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 223.25-13 chr17 21104058 21104233 + 1.75 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -22783 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 147.75-2 chr1 73426625 73426807 + 1.75 NA Intergenic Intergenic 120546 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 139.5-92 chr6 67004337 67004481 + 1.75 NA Intergenic Intergenic -1050942 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 140.25-55 chr3 80072817 80072928 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -304874 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 226-20 chr4 13367796 13367952 + 1.75 NA 3' UTR (NM_001159601, exon 8 of 8) 3' UTR (NM_001159601, exon 8 of 8) 116466 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 196.5-5 chr1 31961735 31961962 + 1.75 NA Intergenic Intergenic -23480 NM_001195100 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 270.75-2 chr11 21168866 21169107 + 1.75 NA intron (NM_201551, intron 13 of 18) L4_A_Mam|LINE|RTE-X 499400 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 200.25-34 chr4 17701504 17701656 + 1.75 NA intron (NM_015688, intron 5 of 17) MLT1N2|LTR|ERVL-MaLR 80041 NM_015688 27146 Hs.744951 NM_015688 ENSG00000047662 FAM184B - family with sequence similarity 184 member B protein-coding 281.5-5 chr12 45986283 45986532 + 1.75 NA intron (NM_004719, intron 1 of 14) L2|LINE|L2 4167 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 231.75-14 chr19 52424887 52425054 + 1.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -4178 NM_001143938 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 170.5-70 chr5 153481266 153481444 + 1.75 NA Intergenic Intergenic -9169 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 377.5 chr14 55498352 55498583 + 1.75 NA Intergenic Intergenic -57922 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 290.25-2 chr10 91134247 91134470 + 1.75 NA Intergenic Intergenic 18722 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 238.5-18 chr2 174167669 174167848 + 1.75 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 80774 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 242.5-3 chr10 70607574 70607800 + 1.75 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -4899 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 348-12 chr6 55873560 55874070 + 1.75 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 1775 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 237.5-27 chr3 8210868 8211082 + 1.75 NA Intergenic MIR1_Amn|SINE|MIR -194668 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 237.75-20 chr18 7022229 7022452 + 1.75 NA intron (NM_005559, intron 19 of 62) intron (NM_005559, intron 19 of 62) 67663 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 203.5-47 chr8 68133515 68133714 + 1.75 NA intron (NM_024870, intron 31 of 39) intron (NM_024870, intron 31 of 39) 181568 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 388-2 chr13 85859878 85860325 + 1.75 NA Intergenic Intergenic -60682 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 166.5-82 chr5 58529951 58530084 + 1.75 NA promoter-TSS (NR_039639) promoter-TSS (NR_039639) 92 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 233.5-33 chr3 67032434 67032599 + 1.75 NA Intergenic Intergenic 34209 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 207-53 chr8 119872285 119872629 + 1.75 NA Intergenic MIR|SINE|MIR -1198 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 139-37 chr2 222248121 222248232 + 1.75 NA intron (NM_181457, intron 4 of 7) intron (NM_181457, intron 4 of 7) -49971 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 228.5-6 chr12 4527241 4527546 + 1.75 NA intron (NR_144382, intron 3 of 9) intron (NR_144382, intron 3 of 9) 11076 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 283.75-14 chr6 14650865 14651333 + 1.75 NA Intergenic Intergenic -365645 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 126-84 chr7 121481718 121481833 + 1.75 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat -85407 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 167.25-55 chr4 76721518 76721683 + 1.75 NA intron (NM_020859, intron 3 of 10) FLAM_A|SINE|Alu 146049 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 321.25-5 chr2 192856139 192856473 + 1.75 NA Intergenic L1MC|LINE|L1 106461 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 164.75-59 chr5 145257444 145257584 + 1.75 NA Intergenic L1ME2|LINE|L1 577828 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 278-5 chr11 91986121 91986335 + 1.75 NA Intergenic L2b|LINE|L2 -238806 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 325.25-8 chr3 40176186 40176496 + 1.75 NA intron (NR_033965, intron 2 of 2) MER3|DNA|hAT-Charlie 76330 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 193.5-41 chr3 71899747 71899916 + 1.75 NA Intergenic Intergenic -114683 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 149.5-72 chr3 175465859 175466023 + 1.75 NA intron (NM_207015, intron 7 of 13) MIR|SINE|MIR 96401 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 306.5-10 chr3 190011422 190011678 + 1.75 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 109347 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 229.25-2 chr1 238111106 238111328 + 1.75 NA Intergenic L2a|LINE|L2 -220295 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 159-19 chr13 62536575 62536684 + 1.75 NA Intergenic Intergenic 212972 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 368.75-2 chr12 41621556 41621812 + 1.75 NA Intergenic Intergenic -142505 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 202.25-41 chr8 140882089 140882282 + 1.75 NA intron (NR_148037, intron 4 of 34) intron (NR_148037, intron 4 of 34) 118819 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 330.5-7 chr22 45368330 45368655 + 1.75 NA intron (NM_148674, intron 15 of 24) L1MD|LINE|L1 45107 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 123.75-82 chr4 131470897 131471009 + 1.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -293885 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 233.25-2 chr1 190215615 190215780 + 1.75 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 260313 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 322.5-2 chr10 29140014 29140313 + 1.75 NA Intergenic Intergenic -148907 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 335.5-6 chr18 31979783 31980163 + 1.75 NA Intergenic Intergenic -36845 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 320 chr1 4900721 4900984 + 1.75 NA Intergenic MIRb|SINE|MIR 246243 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 188 chr10 64509694 64509862 + 1.75 NA Intergenic Intergenic -315750 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 321.75-2 chr11 103797066 103797306 + 1.75 NA Intergenic Intergenic -52720 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 204-31 chr4 58433408 58433646 + 1.75 NA Intergenic L1ME2|LINE|L1 102801 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 176-28 chr3 53597867 53598144 + 1.75 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 103394 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 314.5-16 chr9 132807627 132807995 + 1.75 NA intron (NM_001317959, intron 12 of 14) intron (NM_001317959, intron 12 of 14) -70533 NR_133631 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 154.5-29 chr13 113866406 113866551 + 1.75 NA non-coding (NR_044993, exon 2 of 2) non-coding (NR_044993, exon 2 of 2) 2301 NR_044993 100506394 Hs.132168 NR_044993 ENSG00000272695 GAS6-DT GAS6-AS2 GAS6 divergent transcript ncRNA 261.75-9 chr15 71456471 71456743 + 1.75 NA intron (NM_024817, intron 6 of 16) MIR|SINE|MIR -90629 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 195.5-25 chr14 61907115 61907267 + 1.75 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -20504 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 360.5-4 chr17 43368327 43368703 + 1.75 NA Intergenic AluSx3|SINE|Alu 20383 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 164-73 chr9 106721393 106721552 + 1.75 NA Intergenic Intergenic 105414 NR_104145 100996590 Hs.147110 NR_104145 ENSG00000234323 LINC01505 - long intergenic non-protein coding RNA 1505 ncRNA 270-16 chr20 13529351 13529580 + 1.75 NA intron (NM_017714, intron 9 of 13) L1ME3G|LINE|L1 109467 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 238-34 chr7 143988606 143988888 + 1.75 NA Intergenic Arthur1|DNA|hAT-Tip100 -15250 NM_001005281 135946 Hs.632031 NM_001005281 ENSG00000221813 OR6B1 OR7-3|OR7-9 olfactory receptor family 6 subfamily B member 1 protein-coding 288.25-3 chr12 71256040 71256468 + 1.75 NA Intergenic L1MB1|LINE|L1 -98255 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 196.25-45 chr3 135666780 135666969 + 1.75 NA Intergenic LTR16B1|LTR|ERVL -298854 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 174.25-11 chr10 72359631 72359806 + 1.75 NA Intergenic Intergenic -4799 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 355-6 chr21 44683370 44683754 + 1.75 NA intron (NM_144991, intron 1 of 11) AluJr|SINE|Alu -1399 NM_181686 353332 Hs.688628 NM_181686 ENSG00000187175 KRTAP12-1 KAP12.1|KRTAP12.1 keratin associated protein 12-1 protein-coding 322 chr1 163102448 163102799 + 1.75 NA Intergenic LTR67B|LTR|ERVL 30718 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 115.25-17 chr11 10245714 10245788 + 1.75 NA intron (NM_030962, intron 1 of 39) L1MA10|LINE|L1 48456 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 229-22 chr20 59878313 59878562 + 1.75 NA intron (NM_014258, intron 31 of 44) intron (NM_014258, intron 31 of 44) 55200 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 338-5 chr17 72565168 72565447 + 1.75 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 27497 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 185.75-9 chr10 91142062 91142183 + 1.75 NA Intergenic Intergenic 10958 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 262.5-34 chr6 14811801 14812144 + 1.75 NA Intergenic MER119|DNA|hAT-Charlie -434097 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 278.5-14 chr15 62873749 62874010 + 1.75 NA Intergenic Intergenic 49922 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 275.75-2 chr10 55598852 55599051 + 1.75 NA promoter-TSS (NM_001190478) promoter-TSS (NM_001190478) -91 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 346 chr1 111179402 111180011 + 1.75 NA intron (NM_001007794, intron 5 of 8) intron (NM_001007794, intron 5 of 8) 20940 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 185.75-28 chr2 48270018 48270201 + 1.75 NA Intergenic Intergenic -44573 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 254.25-14 chr3 72106588 72106833 + 1.75 NA Intergenic MIR3|SINE|MIR -6255 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 237.5-26 chr22 48510011 48510185 + 1.75 NA intron (NM_001082967, intron 1 of 3) L1M2|LINE|L1 20545 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 349-2 chr14 56791609 56792094 + 1.75 NA Intergenic LFSINE_Vert|SINE|tRNA 13816 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 258-16 chr16 55439901 55440099 + 1.75 NA intron (NR_147198, intron 4 of 6) intron (NR_147198, intron 4 of 6) 22297 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 302-7 chr16 62808263 62808466 + 1.75 NA Intergenic Intergenic -771926 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 229.5-19 chr14 60563288 60563452 + 1.75 NA Intergenic Intergenic 54224 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 149.25-67 chr9 29252979 29253187 + 1.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -39482 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 154.5-56 chr4 30530018 30530151 + 1.75 NA Intergenic Intergenic -190285 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 298.75-13 chr9 29177697 29177975 + 1.75 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 34463 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 281.5-23 chr9 112664300 112664594 + 1.75 NA 3' UTR (NM_001287036, exon 5 of 5) 3' UTR (NM_001287036, exon 5 of 5) 53670 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 181.75-46 chr9 30236323 30236717 + 1.75 NA Intergenic HAL1b|LINE|L1 171934 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 255.5-27 chr7 31852210 31852465 + 1.75 NA intron (NM_001191059, intron 8 of 18) L1M6|LINE|L1 165122 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 245.75-10 chr2 8009749 8009969 + 1.75 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -33045 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 175.75-12 chr17 52216081 52216181 + 1.75 NA Intergenic MIRb|SINE|MIR -56114 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 195.75-34 chr3 192631602 192631791 + 1.75 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 95845 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 327-14 chr6 53965429 53965759 + 1.75 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) -33296 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 365-6 chr5 34965510 34965757 + 1.75 NA Intergenic L1M2|LINE|L1 36040 NM_001348420 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 432.75-5 chr8 100692504 100692826 + 1.75 NA Intergenic L1MC4|LINE|L1 10359 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 215-17 chr14 62812244 62812462 + 1.75 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 233105 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 273-29 chr8 137054092 137054338 + 1.75 NA Intergenic ERVL-E-int|LTR|ERVL 359373 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 357-6 chr3 167099481 167099845 + 1.75 NA Intergenic Intergenic 200980 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 117.25-106 chrX 93689588 93689681 + 1.75 NA intron (NM_001171110, intron 3 of 4) intron (NM_001171110, intron 3 of 4) 15428 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 187.25-36 chr22 40888714 40888930 + 1.75 NA intron (NM_022098, intron 4 of 9) L1MB4|LINE|L1 -26709 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 324.25 chr11 38219152 38219513 + 1.75 NA Intergenic MER3|DNA|hAT-Charlie 280731 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 180.75-37 chr2 164452541 164452649 + 1.75 NA Intergenic Intergenic 115900 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 133.25-48 chr2 180407453 180407561 + 1.75 NA Intergenic L2b|LINE|L2 -284597 NR_104323 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 152.5-42 chr16 53687574 53687719 + 1.75 NA intron (NM_001127897, intron 5 of 24) intron (NM_001127897, intron 5 of 24) 16213 NM_001328422 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 242.75-14 chr22 25794298 25794490 + 1.75 NA intron (NM_001318245, intron 11 of 43) AluJr|SINE|Alu 52206 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 183.75-44 chr4 157867505 157867660 + 1.75 NA Intergenic L2c|LINE|L2 295092 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 205.25-9 chr11 90921259 90921434 + 1.75 NA Intergenic Tigger5b|DNA|TcMar-Tigger -52144 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 380-3 chr22 39393960 39394260 + 1.75 NA Intergenic Intergenic -5670 NM_153497 10454 Hs.507681 NM_006116 ENSG00000100324 TAB1 3'-Tab1|MAP3K7IP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 protein-coding 230.25-23 chr4 82959130 82959344 + 1.75 NA intron (NM_001288996, intron 2 of 10) AluJr4|SINE|Alu 51586 NM_001288996 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 281-23 chr8 80376587 80376863 + 1.75 NA Intergenic Intergenic -108868 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 322.5-21 chr5 5451475 5451688 + 1.75 NA intron (NM_015325, intron 10 of 18) intron (NM_015325, intron 10 of 18) 28904 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 163-47 chr6 138098020 138098215 + 1.75 NA intron (NM_022121, intron 1 of 2) L1MB7|LINE|L1 9302 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 278.25-15 chr3 134636710 134636925 + 1.75 NA intron (NM_001350860, intron 1 of 7) L1ME4a|LINE|L1 14201 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 323.5-8 chr2 193904613 193904831 + 1.75 NA Intergenic L1P1|LINE|L1 -439547 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 236.5-8 chr10 107398122 107398386 + 1.75 NA Intergenic Intergenic -233548 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 697 chr7 61036668 61037540 + 1.75 NA Intergenic (GAATGGAATC)n|Simple_repeat|Simple_repeat 2266952 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 421-2 chr2 106605896 106606246 + 1.75 NA Intergenic Intergenic 118707 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 322.25-10 chr2 116562655 116562871 + 1.75 NA Intergenic Intergenic 1218948 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 306-8 chr11 114295740 114295979 + 1.75 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) 46 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 194.75-47 chr8 65520210 65520357 + 1.75 NA Intergenic Intergenic 42383 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 132.75-75 chr5 23389581 23389696 + 1.75 NA Intergenic Intergenic -117971 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 383.5-5 chr15 24733280 24733522 + 1.75 NA Intergenic Intergenic 58007 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 176.25-56 chr5 124439690 124439827 + 1.75 NA Intergenic Intergenic -1238 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 452.25-3 chr3 38569935 38570567 + 1.75 NA intron (NM_198056, intron 20 of 27) AluSp|SINE|Alu 73911 NR_134938 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 312-3 chr12 75632016 75632364 + 1.75 NA Intergenic Intergenic -120581 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 291.5-6 chr2 116532038 116532250 + 1.75 NA Intergenic Intergenic 1188329 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 297.25-2 chr1 187900605 187900912 + 1.75 NA Intergenic Intergenic 457130 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 248.5-25 chr5 79997410 79997599 + 1.75 NA intron (NM_001306213, intron 1 of 22) L1MDa|LINE|L1 6208 NM_001306212 7060 Hs.211426 NM_003248 ENSG00000113296 THBS4 TSP-4|TSP4 thrombospondin 4 protein-coding 162.25-19 chr18 45755097 45755208 + 1.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 28199 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 267.25-4 chr14 82412568 82412854 + 1.75 NA Intergenic Intergenic -229921 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 225-6 chr10 98043816 98044094 + 1.75 NA Intergenic Intergenic -13127 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 292-14 chr6 72481824 72482162 + 1.75 NA Intergenic L1MB7|LINE|L1 115247 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 257-23 chrUn_KI270442v1 79851 80141 + 1.75 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 199-13 chr12 108188979 108189203 + 1.75 NA intron (NM_001304447, intron 2 of 9) L1M5|LINE|L1 57305 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 260.75-4 chr12 100090524 100090783 + 1.75 NA intron (NM_001006947, intron 7 of 12) intron (NM_001006947, intron 7 of 12) 52221 NM_001006947 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 206.5-47 chr6 126478054 126478256 + 1.75 NA intron (NR_104462, intron 3 of 3) intron (NR_104462, intron 3 of 3) -6476 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 233.5-7 chr10 76394481 76394661 + 1.75 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -493473 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 232.25-24 chr5 145876248 145876468 + 1.75 NA Intergenic AluJr|SINE|Alu -3390 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 359.75-3 chr10 19967172 19967659 + 1.75 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 150983 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 195.25-8 chr10 92303490 92303680 + 1.75 NA intron (NM_017824, intron 1 of 5) intron (NM_017824, intron 1 of 5) 12418 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 247-26 chr6 62517189 62517415 + 1.75 NA Intergenic Intergenic -231075 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 144.5-54 chr2 34921718 34921864 + 1.75 NA Intergenic Intergenic 244234 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 139-11 chr12 13422315 13422475 + 1.75 NA Intergenic Intergenic -45650 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 274.5-36 chr8 68603400 68603642 + 1.75 NA intron (NR_146186, intron 7 of 12) L1ME2|LINE|L1 -272030 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 220.25-30 chr3 161455339 161455583 + 1.75 NA Intergenic L1MEc|LINE|L1 29034 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 228.25-20 chr20 41074144 41074352 + 1.75 NA intron (NM_003286, intron 3 of 20) intron (NM_003286, intron 3 of 20) 45426 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 247.25-29 chr8 131996911 131997105 + 1.75 NA intron (NM_015137, intron 19 of 22) intron (NM_015137, intron 19 of 22) 62374 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 387.75-4 chr5 60546719 60546997 + 1.75 NA non-coding (NR_024617, exon 4 of 4) non-coding (NR_024617, exon 4 of 4) -50572 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 585.25 chr12 25816548 25817470 + 1.75 NA Intergenic AluYa5|SINE|Alu 57070 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 288-3 chr12 5883713 5883928 + 1.75 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 61439 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 254.75-20 chr6 67412536 67412780 + 1.75 NA Intergenic LTR8|LTR|ERV1 -642693 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 242-16 chr15 40652108 40652440 + 1.75 NA intron (NM_144508, intron 21 of 25) intron (NM_144508, intron 21 of 25) 42831 NR_040058 100505648 Hs.586876 NR_040058 ENSG00000245849 RAD51-AS1 TODRA RAD51 antisense RNA 1 ncRNA 143.25-82 chr9 131083045 131083201 + 1.75 NA intron (NM_006059, intron 24 of 27) L3|LINE|CR1 -13353 NR_033701 83543 Hs.4944 NM_031426 ENSG00000126878 AIF1L C9orf58|IBA2 allograft inflammatory factor 1 like protein-coding 393.75-2 chr10 64206778 64207223 + 1.75 NA Intergenic L1MEc|LINE|L1 -618528 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 447.25 chr18 5349744 5350274 + 1.75 NA Intergenic L1PA15|LINE|L1 -52956 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 175-55 chr7 27780191 27780344 + 1.75 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 40172 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 275.75-5 chr11 19868801 19869012 + 1.75 NA intron (NM_182964, intron 3 of 37) intron (NM_182964, intron 3 of 37) -108823 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 178.75-52 chr6 125970833 125970969 + 1.75 NA intron (NM_138571, intron 2 of 4) intron (NM_138571, intron 2 of 4) 14131 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 340.75-4 chr14 69544441 69544728 + 1.75 NA Intergenic Intergenic 30287 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 232.25-16 chr2 83808346 83808537 + 1.75 NA Intergenic MER76|LTR|ERVL 285627 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 223.5-64 chr5 58634583 58634804 + 1.75 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 51618 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 207-9 chr11 23625579 23625718 + 1.75 NA Intergenic L1MA7|LINE|L1 -206458 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 259-9 chr12 14013877 14014092 + 1.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -33628 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 298.25-7 chr16 86610556 86610844 + 1.75 NA Intergenic LTR16C|LTR|ERVL 32191 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 162.5-96 chr8 139712412 139712593 + 1.75 NA Intergenic Intergenic -9379 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 244.5-14 chr18 29598910 29599204 + 1.75 NA Intergenic Intergenic -699853 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 191.5-44 chr4 2305014 2305165 + 1.75 NA exon (NM_001172656, exon 7 of 12) exon (NM_001172656, exon 7 of 12) -42980 NM_006454 10608 Hs.655020 NM_006454 ENSG00000123933 MXD4 MAD4|MST149|MSTP149|bHLHc12 MAX dimerization protein 4 protein-coding 413.5-2 chr6 146021757 146022085 + 1.75 NA Intergenic L1MA4|LINE|L1 -5786 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 253.25-5 chr10 115353629 115353805 + 1.75 NA intron (NM_207303, intron 19 of 28) L1MA4|LINE|L1 260352 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 331.75 chr10 34131672 34132016 + 1.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -359164 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 127.5-99 chr5 88253955 88254089 + 1.75 NA intron (NM_001349407, intron 1 of 14) intron (NM_001349407, intron 1 of 14) 14823 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 238.25-26 chr7 42673592 42673810 + 1.75 NA intron (NR_110833, intron 1 of 2) MLT1E1A|LTR|ERVL-MaLR 32746 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 126.5-113 chr8 15787842 15787947 + 1.75 NA Intergenic Intergenic 247631 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 237.75-45 chr8 5449469 5449765 + 1.75 NA Intergenic Intergenic -454703 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 267.5-23 chr4 165988801 165988991 + 1.75 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 115659 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 217.75-9 chr12 20315294 20315443 + 1.75 NA Intergenic Intergenic -53877 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 193-14 chr11 132640436 132640611 + 1.75 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 303114 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 125-29 chr15 60031013 60031168 + 1.5 NA Intergenic Intergenic 26779 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 248.5-29 chr5 141447980 141448236 + 1.5 NA intron (NM_003735, intron 1 of 3) AluSq2|SINE|Alu 17601 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 249-35 chr5 166479972 166480156 + 1.5 NA Intergenic LTR78|LTR|ERV1 446306 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 146.25-32 chr17 73106289 73106389 + 1.5 NA Intergenic AluSp|SINE|Alu -13651 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 213.75-27 chr18 74251923 74252152 + 1.5 NA 3' UTR (NM_001914, exon 6 of 6) 3' UTR (NM_001914, exon 6 of 6) 39926 NM_148923 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5|METAG cytochrome b5 type A protein-coding 225.25-35 chr8 128391872 128392036 + 1.5 NA Intergenic L1MA8|LINE|L1 172725 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 180.75-60 chr8 109285252 109285410 + 1.5 NA intron (NM_032869, intron 5 of 9) L1PA16|LINE|L1 44602 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 392.5-3 chr11 115036681 115036975 + 1.5 NA Intergenic HAL1|LINE|L1 -296749 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 218-32 chr3 182756141 182756346 + 1.5 NA Intergenic AluJb|SINE|Alu -37261 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 202.5-7 chr13 50209989 50210234 + 1.5 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 38093 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 316-10 chr2 154084632 154084927 + 1.5 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 140385 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 159.5-70 chr5 99023994 99024135 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -94350 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 114.75-111 chr9 114701972 114702060 + 1.5 NA Intergenic Intergenic -19927 NR_144867 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 226.5-19 chr15 70631883 70632088 + 1.5 NA Intergenic L3|LINE|CR1 -3264 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 287.75-4 chr2 151660556 151660876 + 1.5 NA intron (NM_001271208, intron 46 of 182) MER58A|DNA|hAT-Charlie 73760 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 208-16 chr2 85052606 85052761 + 1.5 NA intron (NM_020122, intron 6 of 6) intron (NM_020122, intron 6 of 6) 14664 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 262.5-28 chr4 26720494 26720821 + 1.5 NA intron (NM_001292054, intron 12 of 17) intron (NM_001292054, intron 12 of 17) 136573 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 167.5-7 chr10 63361753 63361931 + 1.5 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 11206 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 136.75-44 chr2 15924950 15925116 + 1.5 NA intron (NR_125783, intron 2 of 2) L3|LINE|CR1 4634 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 262-15 chr16 21567604 21567856 + 1.5 NA Intergenic AluSz|SINE|Alu -29491 NM_001288660 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 229.5-39 chr4 146171636 146171887 + 1.5 NA Intergenic Intergenic -3957 NM_007080 11157 Hs.190520 NM_007080 ENSG00000164167 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 136.25-75 chr7 132530533 132530723 + 1.5 NA intron (NM_181775, intron 2 of 4) L1MB4|LINE|L1 45842 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 253.5-18 chr16 51587195 51587483 + 1.5 NA Intergenic MER58C|DNA|hAT-Charlie -175180 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 261.75 chr1 31943422 31943889 + 1.5 NA Intergenic Intergenic -5287 NM_001195100 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 241.5-43 chrX 96052019 96052354 + 1.5 NA Intergenic Intergenic 285716 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 274-27 chr7 110081579 110081918 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -121535 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 175.75-27 chr22 24749473 24749620 + 1.5 NA intron (NM_001008496, intron 10 of 20) intron (NM_001008496, intron 10 of 20) -14955 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 290.25-3 chr11 44591577 44591867 + 1.5 NA intron (NM_001024844, intron 2 of 8) MIRb|SINE|MIR 26059 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 194.25-52 chr9 113125269 113125506 + 1.5 NA Intergenic L2c|LINE|L2 12491 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 132.75-105 chr9 29263151 29263284 + 1.5 NA Intergenic Intergenic -49616 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 302-6 chr14 84451600 84451987 + 1.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -820139 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 255.5-32 chr8 131653827 131654220 + 1.5 NA Intergenic L1MB7|LINE|L1 -250070 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 157.5-51 chr2 105025387 105025499 + 1.5 NA intron (NR_110603, intron 1 of 2) AluSx|SINE|Alu -12626 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 184.5-22 chr13 59685168 59685323 + 1.5 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -327473 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 481.5 chr4 20472222 20472587 + 1.5 NA intron (NM_001289135, intron 5 of 35) intron (NM_001289135, intron 5 of 35) -55871 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 170.5-68 chr5 108962569 108962779 + 1.5 NA intron (NR_146155, intron 13 of 19) MIRb|SINE|MIR 38068 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 254.75-23 chrX 96022103 96022294 + 1.5 NA Intergenic L1MB2|LINE|L1 315704 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 158.75-54 chr5 23876939 23877096 + 1.5 NA Intergenic Intergenic -74331 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 187.5-14 chr12 27585655 27585847 + 1.5 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 61545 NM_003622 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 401.25-4 chr16 58565127 58565611 + 1.5 NA intron (NM_206999, intron 16 of 30) AluJo|SINE|Alu -5438 NR_002980 677830 Hs.677515 NR_002980 ENSG00000281910 SNORA50A ACA50|SNORA50|SNORA76A small nucleolar RNA, H/ACA box 50A snoRNA 345.5-8 chr5 139420074 139420373 + 1.5 NA exon (NM_152686, exon 7 of 8) exon (NM_152686, exon 7 of 8) -16136 NM_194296 202051 Hs.373612 NM_194296 ENSG00000170469 SPATA24 CCDC161|T6441 spermatogenesis associated 24 protein-coding 264-12 chr2 79684659 79684866 + 1.5 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -35403 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 246.75-26 chr5 155262477 155262718 + 1.5 NA Intergenic L2c|LINE|L2 248842 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 247.5-14 chr2 52096743 52096948 + 1.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -273803 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 239-24 chr3 107125946 107126223 + 1.5 NA intron (NR_028303, intron 2 of 3) MER81|DNA|hAT-Blackjack 114554 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 190-14 chr15 70939095 70939337 + 1.5 NA intron (NM_017691, intron 8 of 15) L2a|LINE|L2 46773 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 124.5-22 chr11 111924659 111924750 + 1.5 NA promoter-TSS (NM_001368245) promoter-TSS (NM_001368245) -964 NM_001368245 1410 Hs.53454 NM_001885 ENSG00000109846 CRYAB CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2 crystallin alpha B protein-coding 332-5 chr18 2211427 2211797 + 1.5 NA Intergenic Intergenic 359893 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 121.25 chr1 17429479 17429572 + 1.5 NA intron (NM_001136204, intron 1 of 11).2 intron (NM_001136204, intron 1 of 11).2 9011 NM_001136204 55920 Hs.380857 NM_018715 ENSG00000179051 RCC2 TD-60 regulator of chromosome condensation 2 protein-coding 204-27 chr3 105848990 105849173 + 1.5 NA intron (NR_135807, intron 3 of 20) intron (NR_135807, intron 3 of 20) 18510 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 238.5-5 chr1 172882202 172882446 + 1.5 NA Intergenic L2a|LINE|L2 168639 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 153.75-42 chr2 141592535 141592804 + 1.5 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 539032 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 217-24 chr6 52583056 52583209 + 1.5 NA non-coding (NR_103446, exon 3 of 3) non-coding (NR_103446, exon 3 of 3) 5834 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 289.5-10 chr17 71520897 71521236 + 1.5 NA Intergenic AluSg|SINE|Alu -318887 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 174.5-24 chr14 40006558 40006726 + 1.5 NA Intergenic Intergenic -574142 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 246.25-18 chr21 21335381 21335671 + 1.5 NA exon (NM_001352591, exon 7 of 18) exon (NM_001352591, exon 7 of 18) 188364 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 220-17 chr2 49420858 49421111 + 1.5 NA Intergenic Intergenic -266457 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 242-35 chr7 126188066 126188377 + 1.5 NA Intergenic LTR33A|LTR|ERVL 869963 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 184.75-53 chr6 149287169 149287315 + 1.5 NA intron (NM_001292035, intron 2 of 6) L1ME4a|LINE|L1 -29691 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 180-51 chr5 6932572 6932756 + 1.5 NA Intergenic L1ME1|LINE|L1 -104743 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 208.5-62 chr5 134584393 134584588 + 1.5 NA Intergenic Intergenic 48338 NM_001033503 51128 Hs.432984 NM_016103 ENSG00000152700 SAR1B ANDD|CMRD|GTBPB|SARA2 secretion associated Ras related GTPase 1B protein-coding 214.25-46 chr9 4046651 4047087 + 1.5 NA intron (NM_001042413, intron 4 of 10) L3|LINE|CR1 105314 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 312.5-12 chr4 39891743 39891999 + 1.5 NA intron (NM_001100399, intron 16 of 32) AluSx|SINE|Alu 86040 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 268.5-2 chr1 104400046 104400326 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 327163 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 117-27 chr17 69213782 69213909 + 1.5 NA intron (NM_080282, intron 10 of 39) L1PB1|LINE|L1 21167 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 162.75-59 chr5 45428249 45428402 + 1.5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 268055 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 247-28 chr6 71947788 71947991 + 1.5 NA intron (NM_001350412, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 61186 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 248.5-16 chr2 105944494 105944826 + 1.5 NA Intergenic Intergenic 92813 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 163.5-89 chr8 83527584 83527755 + 1.5 NA Intergenic Intergenic 123911 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 156.5-33 chr2 64288844 64289041 + 1.5 NA Intergenic Intergenic -51817 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 186-24 chr19 49390224 49390379 + 1.5 NA intron (NM_144688, intron 1 of 19) intron (NM_144688, intron 1 of 19) 2052 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 168.75-41 chr4 37146924 37147100 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR 94979 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 287-12 chr3 29566383 29566702 + 1.5 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 285230 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 219-21 chr3 1064199 1064554 + 1.5 NA Intergenic Intergenic -28648 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 276-13 chr20 8947374 8947652 + 1.5 NA Intergenic Intergenic 116328 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 207-18 chr17 40741862 40742111 + 1.5 NA Intergenic LTR16A|LTR|ERVL 13345 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 241.5-20 chr2 194898913 194899267 + 1.5 NA Intergenic Intergenic 168495 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 330.5-11 chr6 26388553 26388841 + 1.5 NA intron (NM_181531, intron 3 of 6) intron (NM_181531, intron 3 of 6) 5589 NM_001197240 10385 Hs.373938 NM_006995 ENSG00000124508 BTN2A2 BT2.2|BTF2|BTN2.2 butyrophilin subfamily 2 member A2 protein-coding 207.75-38 chr7 36787882 36788148 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -63466 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 244.75-10 chr15 70246623 70246939 + 1.5 NA Intergenic MIRc|SINE|MIR -148864 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 136-14 chr12 57262062 57262206 + 1.5 NA intron (NM_001351215, intron 18 of 22) intron (NM_001351215, intron 18 of 22) -10947 NM_001286257 246329 Hs.417595 NM_145064 ENSG00000185482 STAC3 MYPBB|NAM SH3 and cysteine rich domain 3 protein-coding 140-51 chr5 59862755 59862925 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 30886 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 258.75-29 chr8 119693979 119694158 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -20678 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 212-44 chr9 111264097 111264332 + 1.5 NA Intergenic (CTCATT)n|Simple_repeat|Simple_repeat 7000 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 175.5-20 chr12 79745970 79746109 + 1.5 NA Intergenic AluJb|SINE|Alu -54942 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 170-13 chr14 61532038 61532251 + 1.5 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 38050 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 181.5-72 chr8 33726008 33726217 + 1.5 NA Intergenic Intergenic -126006 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 194.5-83 chr9 95551449 95551607 + 1.5 NA Intergenic MIR3|SINE|MIR -34471 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 121-75 chrX 142817213 142817340 + 1.5 NA Intergenic Intergenic -208652 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 285.5-10 chr21 30902088 30902357 + 1.5 NA Intergenic Intergenic -20642 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 339.5-9 chr5 136838071 136838455 + 1.5 NA Intergenic Intergenic -289934 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 190.5-25 chr14 79455442 79455661 + 1.5 NA intron (NM_001105250, intron 1 of 6) L1M1|LINE|L1 176171 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 203.25-20 chr15 58002137 58002305 + 1.5 NA intron (NM_170696, intron 4 of 11) intron (NM_170696, intron 4 of 11) 11802 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 213-11 chr10 34389495 34389652 + 1.5 NA intron (NM_001184789, intron 7 of 22) intron (NM_001184789, intron 7 of 22) 425723 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 131-47 chr4 99599464 99599613 + 1.5 NA intron (NM_001300785, intron 8 of 17) MIRb|SINE|MIR 35460 NM_001300785 4547 Hs.195799 NM_000253 ENSG00000138823 MTTP ABL|MTP microsomal triglyceride transfer protein protein-coding 239.25-18 chr2 208534305 208534472 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -8254 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 197.5-52 chr6 12372677 12372912 + 1.5 NA Intergenic Intergenic 82433 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 261-48 chr9 36907883 36908087 + 1.5 NA intron (NR_103999, intron 6 of 8) AluJb|SINE|Alu -14454 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 190.5-59 chr4 183808751 183808976 + 1.5 NA intron (NR_132761, intron 1 of 2) MER30|DNA|hAT-Charlie 10841 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 298.25-6 chr15 79830325 79830538 + 1.5 NA Intergenic Intergenic 66566 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 342.75-2 chr11 63170074 63170405 + 1.5 NA intron (NM_199352, intron 6 of 8) L1PA8|LINE|L1 -26018 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 172.5-75 chr6 155937727 155937855 + 1.5 NA Intergenic Intergenic -9006 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 352.5-3 chr12 4547572 4547930 + 1.5 NA intron (NM_006479, intron 4 of 8) MIR|SINE|MIR 8861 NM_006479 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 232-4 chr12 4532889 4533170 + 1.5 NA intron (NR_144382, intron 2 of 9) L2c|LINE|L2 5440 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 320.5-4 chr11 100066104 100066493 + 1.5 NA intron (NM_001243270, intron 9 of 23) MIRb|SINE|MIR 510153 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 183-14 chr11 79817955 79818172 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -377033 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 119.75-87 chr8 101006609 101006712 + 1.5 NA Intergenic Intergenic -45394 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 312-12 chr7 43657208 43657497 + 1.5 NA intron (NM_001371308, intron 1 of 7) intron (NM_001371308, intron 1 of 7) 72171 NR_163916 147-80 chr9 89041732 89041860 + 1.5 NA intron (NM_016848, intron 10 of 11) intron (NM_016848, intron 10 of 11) 50328 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 164-42 chr4 41199335 41199492 + 1.5 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 15129 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 176-29 chr3 67579917 67580096 + 1.5 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 74608 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 213.75-23 chr17 59742041 59742454 + 1.5 NA intron (NM_001329401, intron 4 of 9) AluJr4|SINE|Alu 34593 NM_030938 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 271-20 chr5 162586182 162586527 + 1.5 NA Intergenic Intergenic 518712 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 207.5-9 chr11 81245317 81245552 + 1.5 NA Intergenic Intergenic -482631 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 145.75-50 chr21 30850275 30850424 + 1.5 NA Intergenic Intergenic -20590 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 197.25-3 chr1 89290891 89291116 + 1.5 NA promoter-TSS (NR_077244) promoter-TSS (NR_077244) -641 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 115.5-29 chr14 44639543 44639637 + 1.5 NA Intergenic Intergenic 132181 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 247-36 chr9 108322454 108322821 + 1.5 NA Intergenic Intergenic 533349 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 287.25 chr1 83612055 83612296 + 1.5 NA intron (NR_119375, intron 2 of 2) AluSx4|SINE|Alu 166121 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 373.25-3 chr5 127014972 127015384 + 1.5 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 15380 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 221.5-22 chr2 225254265 225254501 + 1.5 NA Intergenic Intergenic -145327 NM_001371273 287.25-4 chr11 27200344 27200614 + 1.5 NA intron (NR_125767, intron 2 of 4) HAL1|LINE|L1 18289 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 194.5-13 chr11 74817548 74817748 + 1.5 NA exon (NM_001098638, exon 4 of 6) exon (NM_001098638, exon 4 of 6) 68799 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 236.75-14 chr2 176823511 176823726 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 185864 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 185.5-8 chr10 27643802 27643961 + 1.5 NA Intergenic MER63C|DNA|hAT-Blackjack -100734 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 219-35 chr7 44068600 44068815 + 1.5 NA 3' UTR (NM_001122956, exon 13 of 13) 3' UTR (NM_001122956, exon 13 of 13) -3140 NM_000290 5224 Hs.632642 NM_000290 ENSG00000164708 PGAM2 GSD10|PGAM-M|PGAMM phosphoglycerate mutase 2 protein-coding 234.5-21 chr2 28727457 28727688 + 1.5 NA intron (NR_145832, intron 1 of 1) intron (NR_145832, intron 1 of 1) 8633 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 221.25-7 chr12 111542954 111543129 + 1.5 NA intron (NR_132311, intron 5 of 23) intron (NR_132311, intron 5 of 23) 56274 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 195.5-94 chr9 97588236 97588464 + 1.5 NA intron (NM_001166116, intron 8 of 9) L1MB7|LINE|L1 45018 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 164-5 chr10 11355707 11356004 + 1.5 NA Intergenic Intergenic -11181 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 277.75-5 chr10 90904901 90905329 + 1.5 NA intron (NM_001104546, intron 13 of 13) intron (NM_001104546, intron 13 of 13) 16160 NM_014391 27063 Hs.448589 NM_014391 ENSG00000148677 ANKRD1 ALRP|C-193|CARP|CVARP|MCARP|bA320F15.2 ankyrin repeat domain 1 protein-coding 254-19 chr6 162785128 162785435 + 1.5 NA intron (NM_001080379, intron 1 of 4) MLT1J1-int|LTR|ERVL-MaLR 57311 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 168.75-33 chr3 17449246 17449395 + 1.5 NA intron (NM_014744, intron 3 of 21) L1PA7|LINE|L1 250700 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 172.5-43 chr21 24481987 24482149 + 1.5 NA intron (NR_135520, intron 4 of 5) intron (NR_135520, intron 4 of 5) 53328 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 140.5-45 chr2 117162640 117162754 + 1.5 NA Intergenic Intergenic -651994 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 148.5-34 chr16 84733621 84733774 + 1.5 NA intron (NR_073577, intron 2 of 11) L1ME3Cz|LINE|L1 33697 NR_073577 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 226-10 chr14 42572204 42572434 + 1.5 NA Intergenic L1MA3|LINE|L1 965463 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 174.75-16 chr13 101328426 101328634 + 1.5 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 87978 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 225.5-45 chr6 122066795 122066987 + 1.5 NA Intergenic L2a|LINE|L2 -332660 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 197.25-18 chr11 121308160 121308352 + 1.5 NA 3' UTR (NM_006918, exon 5 of 5) 3' UTR (NM_006918, exon 5 of 5) 15388 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 244-17 chr3 87228453 87228816 + 1.5 NA intron (NM_001244644, intron 1 of 4) intron (NM_001244644, intron 1 of 4) 1325 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 173.25-35 chr2 135570634 135570758 + 1.5 NA intron (NM_001282799, intron 1 of 22) intron (NM_001282799, intron 1 of 22) -15656 NM_001354199 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 199.25-34 chr6 27881159 27881401 + 1.5 NA Intergenic Intergenic -7769 NM_003546 8368 Hs.533295 NM_003546 ENSG00000275126 HIST1H4L H4.k|H4/k|H4FK histone cluster 1 H4 family member l protein-coding 242.5 chr1 111606542 111606902 + 1.5 NA intron (NR_034126, intron 1 of 4) intron (NR_034126, intron 1 of 4) 1596 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 156-48 chr4 70092239 70092403 + 1.5 NA Intergenic Intergenic 24935 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 308.25-9 chr7 15062017 15062334 + 1.5 NA Intergenic Intergenic -87317 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 184-51 chr8 119014199 119014430 + 1.5 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -52933 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 210.25-6 chr10 35382208 35382349 + 1.5 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 45404 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 180-41 chr2 231029549 231029716 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -7891 NM_001144994 257407 Hs.526596 NM_001144994 ENSG00000204128 C2orf72 - chromosome 2 open reading frame 72 protein-coding 174.5-21 chr12 62675344 62675467 + 1.5 NA intron (NM_020700, intron 8 of 9) (TGAA)n|Simple_repeat|Simple_repeat 71719 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 221.25-20 chr21 18224621 18224874 + 1.5 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -20086 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 261-6 chr11 72019336 72019678 + 1.5 NA exon (NM_006185, exon 9 of 27) exon (NM_006185, exon 9 of 27) 5216 NR_104178 100128494 Hs.713607 NR_104178 ENSG00000251143 LOC100128494 - uncharacterized LOC100128494 ncRNA 162.5-73 chr5 113997135 113997325 + 1.5 NA Intergenic Intergenic -364840 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 160.5-34 chr2 22975098 22975283 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -409989 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 265-29 chr8 113033026 113033272 + 1.5 NA intron (NM_001363185, intron 5 of 66) THE1D-int|LTR|ERVL-MaLR 344003 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 163.5-63 chr4 97837457 97837643 + 1.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 305926 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 317-7 chr4 55098061 55098410 + 1.5 NA exon (NM_002253, exon 17 of 30) exon (NM_002253, exon 17 of 30) 27360 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 137.25-74 chr8 38971964 38972177 + 1.5 NA 3' UTR (NM_021623, exon 12 of 12) 3' UTR (NM_021623, exon 12 of 12) -2158 NM_153692 203100 Hs.661014 NM_153692 ENSG00000169495 HTRA4 - HtrA serine peptidase 4 protein-coding 312.75-7 chr5 58177242 58177551 + 1.5 NA Intergenic Intergenic -55055 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 213.5-43 chr6 124963934 124964100 + 1.5 NA promoter-TSS (NR_026876) promoter-TSS (NR_026876) -990 NR_026876 7955 Hs.544438 NR_026876 ENSG00000236548 RNF217-AS1 STL RNF217 antisense RNA 1 (head to head) ncRNA 190.25-5 chr1 116206552 116206769 + 1.5 NA Intergenic L2a|LINE|L2 94905 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 314-9 chr2 131653817 131654219 + 1.5 NA Intergenic Intergenic 16993 NR_108087 101927994 Hs.635757 NR_108087 ENSG00000224559 LINC01087 - long intergenic non-protein coding RNA 1087 ncRNA 231.75-6 chr13 22594111 22594303 + 1.5 NA Intergenic Intergenic 303974 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 198-18 chr16 51847737 51847953 + 1.5 NA Intergenic Intergenic 85326 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 273.25-3 chr16 13508557 13508761 + 1.5 NA Intergenic Intergenic -411498 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 214.5-9 chr11 103309392 103309641 + 1.5 NA intron (NM_001377, intron 78 of 88) intron (NM_001377, intron 78 of 88) 200090 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 214.75-37 chr7 91296388 91296771 + 1.5 NA Intergenic Intergenic 32146 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 195.75-25 chr22 24024984 24025170 + 1.5 NA intron (NM_001199281, intron 1 of 36) L1MC4a|LINE|L1 13707 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 239.5-33 chr8 124345560 124345881 + 1.5 NA intron (NM_194291, intron 1 of 6) THE1D|LTR|ERVL-MaLR 26979 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 193-30 chr2 23415546 23415694 + 1.5 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 30441 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 244.5-28 chr4 71009082 71009304 + 1.5 NA intron (NM_000788, intron 2 of 6) intron (NM_000788, intron 2 of 6) 15544 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 250-26 chr6 54616810 54617184 + 1.5 NA Intergenic L1ME2|LINE|L1 -229774 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 190-39 chr5 40986746 40986901 + 1.5 NA Intergenic Intergenic 77326 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 273.75-15 chr6 17611792 17612074 + 1.5 NA TTS (NM_016255) TTS (NM_016255) 11631 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 152-27 chr16 58005847 58005996 + 1.5 NA intron (NM_001330568, intron 2 of 6) L1MCa|LINE|L1 4514 NM_001195302 79650 Hs.408702 NM_024598 ENSG00000103005 USB1 C16orf57|HVSL1|Mpn1|PN|hUsb1 U6 snRNA biogenesis phosphodiesterase 1 protein-coding 177.5-4 chr1 210537458 210537665 + 1.5 NA intron (NM_001122834, intron 9 of 11) L1M6|LINE|L1 208195 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 127-33 chr15 71644136 71644264 + 1.5 NA intron (NM_001286429, intron 1 of 11) MIR3|SINE|MIR 47339 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 228.75-22 chr2 51675558 51675766 + 1.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 643061 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 188-42 chr8 14100341 14100645 + 1.5 NA intron (NM_139167, intron 7 of 7) intron (NM_139167, intron 7 of 7) 470803 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 214-23 chr18 5477089 5477262 + 1.5 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 63381 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 209.25-22 chr20 31366035 31366191 + 1.5 NA Intergenic FLAM_C|SINE|Alu -2488 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 256-29 chr9 27237261 27237434 + 1.5 NA Intergenic L1MA8|LINE|L1 45446 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 264.5-6 chr12 12090961 12091287 + 1.5 NA intron (NM_001370269, intron 6 of 7) intron (NM_001370269, intron 6 of 7) 19656 NM_030766 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 218.25-18 chr14 60229064 60229292 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -16572 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 647.25 chr9 36897301 36898550 + 1.5 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -4394 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 334.25-6 chr4 30429116 30429440 + 1.5 NA Intergenic L2a|LINE|L2 -291091 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 140.5-12 chr12 10075614 10075805 + 1.5 NA intron (NM_001297749, intron 1 of 3) intron (NM_001297749, intron 1 of 3) 23276 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 180-18 chr14 20052100 20052252 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie -7869 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 171.5-86 chr7 39032093 39032223 + 1.5 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -18591 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 164.25-56 chr8 66748405 66748583 + 1.5 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 19540 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 242.5-21 chr20 4534556 4534872 + 1.5 NA Intergenic L1MB7|LINE|L1 -151742 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 174.75-23 chr15 49855469 49855629 + 1.5 NA Intergenic Intergenic 234501 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 119.25-30 chr15 94765125 94765264 + 1.5 NA Intergenic Intergenic -90169 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 294-16 chr4 100911322 100911536 + 1.5 NA Intergenic L1ME1|LINE|L1 -236316 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 252-16 chr2 132631432 132631649 + 1.5 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 38665 NM_144586 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 344.25 chr10 39378933 39379356 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 682548 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 236.25-22 chr22 46955025 46955242 + 1.5 NA intron (NR_104292, intron 10 of 13) intron (NR_104292, intron 10 of 13) -39091 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 378.5-3 chr14 69090517 69091029 + 1.5 NA 3' UTR (NM_001284208, exon 7 of 7) 3' UTR (NM_001284208, exon 7 of 7) 61826 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 177.25-40 chr5 26336369 26336592 + 1.5 NA Intergenic Intergenic 702106 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 185.5-63 chr5 109795793 109795930 + 1.5 NA intron (NM_002372, intron 12 of 21) intron (NM_002372, intron 12 of 21) -87321 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 204.5-3 chr1 108512637 108512901 + 1.5 NA Intergenic Intergenic -47331 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 275-15 chr4 141724078 141724467 + 1.5 NA intron (NR_037840, intron 5 of 7) L1MC2|LINE|L1 87689 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 163.75-14 chr11 93186322 93186481 + 1.5 NA intron (NM_152313, intron 1 of 10) L1MC4|LINE|L1 11025 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 285.75-11 chr2 42889831 42890332 + 1.5 NA Intergenic LTR8A|LTR|ERV1 -97498 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 349.5-2 chr1 225297326 225297659 + 1.5 NA intron (NM_001367479, intron 55 of 85) L1MA5A|LINE|L1 130546 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 197.25-39 chr20 14883863 14884087 + 1.5 NA TTS (NR_037841) TTS (NR_037841) 45543 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 392-4 chr3 86434013 86434408 + 1.5 NA Intergenic Intergenic -47733 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 154.5-74 chr8 129019125 129019305 + 1.5 NA Intergenic Intergenic -53214 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 257.25-11 chr18 72826232 72826539 + 1.5 NA intron (NM_001354018, intron 4 of 11) L1MD|LINE|L1 26997 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 252.75-25 chr5 131628046 131628357 + 1.5 NA intron (NM_016340, intron 1 of 27) Tigger1|DNA|TcMar-Tigger 7028 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 241-31 chr5 169247688 169247889 + 1.5 NA intron (NM_003062, intron 2 of 35) AluJb|SINE|Alu 15906 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 177.75-69 chr9 125001015 125001157 + 1.5 NA intron (NM_173690, intron 13 of 18) intron (NM_173690, intron 13 of 18) -60003 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 174-47 chr6 36192469 36192694 + 1.5 NA Intergenic Intergenic -4163 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 115-4 chr1 60056773 60057042 + 1.5 NA intron (NM_152377, intron 2 of 11) intron (NM_152377, intron 2 of 11) 16863 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 234-45 chr8 141972834 141973104 + 1.5 NA Intergenic Intergenic -186656 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 277.75-8 chr16 57596852 57597091 + 1.5 NA Intergenic L1ME3B|LINE|L1 -22767 NM_001370436 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 318-9 chr2 13703433 13703827 + 1.5 NA Intergenic L3b|LINE|CR1 -696617 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 187.75-32 chr3 82397718 82398132 + 1.5 NA intron (NR_147146, intron 3 of 8) L1M5|LINE|L1 411783 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 355.5-13 chr6 101127784 101128211 + 1.5 NA Intergenic Intergenic -246625 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 234-25 chr2 123872396 123872588 + 1.5 NA Intergenic Intergenic 152682 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 143.25-51 chr3 180088158 180088309 + 1.5 NA Intergenic L1M1|LINE|L1 -51296 NM_001256752 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 179.25-11 chr12 44687768 44688039 + 1.5 NA intron (NM_006159, intron 13 of 20) intron (NM_006159, intron 13 of 20) 187758 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 186-52 chr8 21587490 21587650 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X 201305 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 201-53 chr9 38733344 38733620 + 1.5 NA Intergenic Intergenic 112394 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 232.75-12 chr2 49677156 49677476 + 1.5 NA Intergenic Intergenic 296887 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 217.5-18 chr2 55497761 55497996 + 1.5 NA Intergenic Intergenic -21717 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 159.75-72 chrX 69758331 69758599 + 1.5 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 142352 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 365.25-4 chr4 30266247 30266501 + 1.5 NA Intergenic Intergenic -453995 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 245.5-25 chr4 43948108 43948341 + 1.5 NA Intergenic Intergenic -68637 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 242-40 chr9 37342860 37343066 + 1.5 NA intron (NR_110317, intron 5 of 7) intron (NR_110317, intron 5 of 7) -79733 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 345.5-5 chr4 89872843 89873194 + 1.5 NA Intergenic Intergenic -6493 NM_001371403 141.5-41 chr16 72050795 72050971 + 1.5 NA Intergenic Intergenic -3622 NM_001318138 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 115.5-97 chr8 103777412 103777517 + 1.5 NA intron (NM_001348497, intron 3 of 22) intron (NM_001348497, intron 3 of 22) -41756 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 258.25-18 chr5 1266976 1267380 + 1.5 NA intron (NM_198253, intron 9 of 15) intron (NM_198253, intron 9 of 15) 27869 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 178-18 chr14 70987085 70987357 + 1.5 NA intron (NM_001308160, intron 6 of 33) intron (NM_001308160, intron 6 of 33) 79762 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 167.25-44 chr22 28380204 28380415 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -79560 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 167-25 chr17 60876384 60876515 + 1.5 NA intron (NM_001330413, intron 9 of 25) L2c|LINE|L2 198598 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 175-56 chr7 115955044 115955263 + 1.5 NA intron (NM_001244583, intron 2 of 5) intron (NM_001244583, intron 2 of 5) 13160 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 143-54 chr5 12810514 12810685 + 1.5 NA Intergenic Intergenic 142740 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 142-15 chr12 48142919 48143065 + 1.5 NA intron (NR_148956, intron 16 of 20) intron (NR_148956, intron 16 of 20) 10195 NR_106760 102466657 NR_106760 ENSG00000275770 MIR6505 hsa-mir-6505|mir-6505 microRNA 6505 ncRNA 204-44 chrX 103603514 103603771 + 1.5 NA Intergenic Intergenic -4264 NM_001006933 85012 Hs.311776 NM_032926 ENSG00000196507 TCEAL3 WEX8 transcription elongation factor A like 3 protein-coding 243.75 chr1 80774644 80774828 + 1.5 NA Intergenic Intergenic 133449 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 246.5-8 chr19 24378508 24378771 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -215192 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 195.5-64 chr4 83252784 83252947 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 31930 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 160-15 chr18 71154794 71154920 + 1.5 NA Intergenic L1MC5a|LINE|L1 424099 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 224-31 chr8 78835345 78835534 + 1.5 NA Intergenic Intergenic -2090 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 311.25 chr1 196010861 196011207 + 1.5 NA Intergenic Intergenic 77681 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 255.75-25 chr8 116823577 116823840 + 1.5 NA Intergenic L1MEc|LINE|L1 -50716 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 181-50 chr8 138974778 138974921 + 1.5 NA Intergenic Intergenic -60808 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 153.5-47 chr2 140652316 140652659 + 1.5 NA intron (NM_018557, intron 41 of 90) L1M6|LINE|L1 -65802 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 242.5-28 chr3 153266608 153266841 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 104498 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 179-55 chr7 50425529 50425790 + 1.5 NA Intergenic Intergenic 24691 NM_001346563 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 364.5-3 chr3 42571022 42571446 + 1.5 NA intron (NM_001201572, intron 1 of 6) Tigger16a|DNA|TcMar-Tigger -10606 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 174.5-5 chr10 22668448 22668572 + 1.5 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 45598 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 165-14 chr12 10700182 10700443 + 1.5 NA intron (NM_001145426, intron 8 of 8) intron (NM_001145426, intron 8 of 8) 23011 NM_003651 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 328.5-14 chr4 86698573 86698899 + 1.5 NA intron (NM_080685, intron 6 of 47) L2|LINE|L2 104421 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 174.5-68 chr4 159739675 159739809 + 1.5 NA intron (NR_146278, intron 2 of 2) L1MA4|LINE|L1 38042 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 148-38 chr20 16321973 16322239 + 1.5 NA intron (NM_024704, intron 24 of 25) intron (NM_024704, intron 24 of 25) 251342 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 310.5-13 chr5 121491702 121491975 + 1.5 NA Intergenic L1MA10|LINE|L1 169288 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 192-51 chr8 63692690 63692926 + 1.5 NA Intergenic Intergenic -76622 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 205-19 chr14 71520620 71520901 + 1.5 NA intron (NM_001354286, intron 4 of 24) AluJb|SINE|Alu 32899 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 189.25-41 chr7 54427222 54427547 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 96687 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 245.5-35 chr5 117419363 117419657 + 1.5 NA intron (NR_046089, intron 1 of 5) L1MB3|LINE|L1 3998 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 139-7 chr10 115357708 115357908 + 1.5 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 264443 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 222.5-42 chr5 120849213 120849390 + 1.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 317837 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 203.5-42 chr5 90851538 90851768 + 1.5 NA intron (NR_003149, intron 79 of 89) L2|LINE|L2 292856 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 261.75-5 chr12 2927976 2928206 + 1.5 NA intron (NM_003324, intron 4 of 10) intron (NM_003324, intron 4 of 10) -31306 NM_003213 7004 Hs.94865 NM_003213 ENSG00000197905 TEAD4 EFTR-2|RTEF1|TCF13L1|TEF-3|TEF3|TEFR-1|hRTEF-1B TEA domain transcription factor 4 protein-coding 219-39 chr8 109478508 109478670 + 1.5 NA intron (NM_177531, intron 53 of 77) L2a|LINE|L2 -61111 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 246.5-13 chr3 86880695 86880946 + 1.5 NA Intergenic Intergenic 110329 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 288-17 chr6 165874398 165874695 + 1.5 NA Intergenic Intergenic -113005 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 132.75-65 chr3 153670114 153670254 + 1.5 NA intron (NR_146713, intron 3 of 6) L1ME3A|LINE|L1 92342 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 298-14 chr2 164077915 164078212 + 1.5 NA Intergenic Intergenic -342055 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 315-5 chr16 9604547 9604831 + 1.5 NA Intergenic Intergenic -149184 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 273.75-9 chr18 52988734 52989095 + 1.5 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -248187 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 167.5-19 chr13 75023750 75023886 + 1.5 NA Intergenic Intergenic 216563 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 335.25-6 chr12 95182658 95182999 + 1.5 NA intron (NM_018351, intron 2 of 20) AluSx|SINE|Alu 34639 NM_018351 55785 Hs.506381 NM_018351 ENSG00000180263 FGD6 ZFYVE24 FYVE, RhoGEF and PH domain containing 6 protein-coding 370.25-7 chr8 140253157 140253419 + 1.5 NA intron (NM_001160372, intron 15 of 22) intron (NM_001160372, intron 15 of 22) -152753 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 322.5 chr1 55825070 55825504 + 1.5 NA Intergenic LTR103b_Mam|LTR|ERV1? 119676 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 147-4 chr1 151214122 151214275 + 1.5 NA intron (NM_001135637, intron 1 of 13) L1ME4a|LINE|L1 15646 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 188-14 chr15 63268981 63269198 + 1.5 NA Intergenic L2c|LINE|L2 -8461 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 192-46 chr6 96114350 96114552 + 1.5 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 98477 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 171.5-5 chr10 17880229 17880490 + 1.5 NA intron (NM_002438, intron 19 of 29) intron (NM_002438, intron 19 of 29) 35252 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 251.25-16 chr2 128889847 128890069 + 1.5 NA Intergenic L1M4b|LINE|L1 25358 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 136.75-31 chr14 68995429 68995630 + 1.5 NA Intergenic AluSc|SINE|Alu 15847 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 321.75-14 chr5 40852278 40852580 + 1.5 NA exon (NM_032587, exon 3 of 3) exon (NM_032587, exon 3 of 3) 11062 NM_032587 84674 Hs.200242 NM_032587 ENSG00000132357 CARD6 CINCIN1 caspase recruitment domain family member 6 protein-coding 166.25-26 chr2 25184237 25184541 + 1.5 NA Intergenic L2a|LINE|L2 -15538 NM_001035256 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 250.75-2 chr10 30825311 30825736 + 1.5 NA Intergenic Intergenic 102304 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 142.5 chr1 48683171 48683334 + 1.5 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 93639 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 214-41 chr8 83882881 83883034 + 1.5 NA Intergenic Intergenic -299830 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 245.25-12 chr16 12630998 12631291 + 1.5 NA Intergenic Intergenic -89177 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 272-3 chr10 122958673 122958968 + 1.5 NA Intergenic LTR32|LTR|ERVL -4593 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 150-61 chr5 8657986 8658174 + 1.5 NA Intergenic Intergenic -181652 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 202.25-38 chr7 40508752 40509120 + 1.5 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 373960 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 300-5 chr11 5143750 5144089 + 1.5 NA Intergenic L1MC4|LINE|L1 8450 NM_012375 23538 Hs.553520 NM_012375 ENSG00000182070 OR52A1 HPFH1OR olfactory receptor family 52 subfamily A member 1 protein-coding 196.25-47 chr4 31980785 31981038 + 1.5 NA Intergenic L2c|LINE|L2 -16468 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 221.75-5 chr12 41971844 41972248 + 1.5 NA Intergenic Intergenic 172828 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 117-6 chr1 183350173 183350340 + 1.5 NA intron (NM_015039, intron 1 of 10) intron (NM_015039, intron 1 of 10) -45382 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 220.25-2 chr1 68944280 68944709 + 1.5 NA Intergenic MIRb|SINE|MIR -111404 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 154.75-68 chrX 84281130 84281423 + 1.5 NA Intergenic AluSx|SINE|Alu -55448 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 193.5-21 chr15 39304525 39304662 + 1.5 NA Intergenic Intergenic 53924 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 314-14 chr5 62210066 62210393 + 1.5 NA Intergenic L1MC4|LINE|L1 -95933 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 202-29 chr8 91202404 91202565 + 1.5 NA intron (NM_001354470, intron 3 of 3) L2a|LINE|L2 -3001 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 188.5-42 chr5 10906313 10906591 + 1.5 NA Intergenic Intergenic -145218 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 233.25-7 chr13 92386380 92386545 + 1.5 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -34255 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 150-21 chr13 57638036 57638147 + 1.5 NA intron (NM_001040429, intron 1 of 3) intron (NM_001040429, intron 1 of 3) 6347 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 216.75-45 chr9 108556702 108556981 + 1.5 NA Intergenic Intergenic 299145 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 328-2 chr1 186525465 186525707 + 1.5 NA Intergenic L1MEd|LINE|L1 -64472 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 297.75-12 chr20 54349786 54350163 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -125619 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 297-15 chr21 30005811 30006141 + 1.5 NA Intergenic Intergenic -65924 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 256.5-19 chr2 63501650 63501983 + 1.5 NA intron (NR_148705, intron 1 of 16) AluSq2|SINE|Alu -63809 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 229.5-16 chr12 127604338 127604537 + 1.5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 32030 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 194.75-18 chr18 13103360 13103533 + 1.5 NA intron (NM_032142, intron 38 of 44) intron (NM_032142, intron 38 of 44) 112084 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 195-45 chr5 57243514 57243738 + 1.5 NA intron (NM_001331037, intron 7 of 12) intron (NM_001331037, intron 7 of 12) 29552 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 188.25-34 chr3 26835423 26835658 + 1.5 NA Intergenic Intergenic 140983 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 180.75-55 chr6 146778489 146778771 + 1.5 NA intron (NM_024694, intron 29 of 35) intron (NM_024694, intron 29 of 35) 25194 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 154.5-68 chr7 28604567 28604801 + 1.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -81449 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 336.25-4 chr20 57820506 57820905 + 1.5 NA Intergenic L2a|LINE|L2 -109169 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 187-45 chr4 113089836 113090043 + 1.5 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) -16924 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 242.25-20 chr4 31556625 31556847 + 1.5 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 50192 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 267.5-26 chr5 155571947 155572241 + 1.5 NA Intergenic L1MEg|LINE|L1 558339 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 155-41 chr5 3151722 3151921 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie -26014 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 277-16 chr2 160497569 160497974 + 1.5 NA Intergenic L1MC5a|LINE|L1 -3964 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 157-62 chr9 83084073 83084193 + 1.5 NA Intergenic L1ME4a|LINE|L1 -20991 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 336.25-3 chr19 36098348 36098632 + 1.5 NA intron (NM_001083961, intron 21 of 31) AluSc|SINE|Alu -12713 NM_001302757 728361 Hs.143920 NM_001270948 ENSG00000105261 OVOL3 HOVO3 ovo like zinc finger 3 protein-coding 194.75-16 chr17 32283009 32283194 + 1.5 NA intron (NM_001363836, intron 2 of 8) intron (NM_001363836, intron 2 of 8) 16925 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 283.5-22 chr7 28282524 28282839 + 1.5 NA Intergenic L1ME4a|LINE|L1 -16640 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 145.5-52 chr2 172417206 172417385 + 1.5 NA Intergenic Intergenic -10041 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 269.25 chr1 218797187 218797498 + 1.5 NA intron (NR_031644, intron 5 of 6) intron (NR_031644, intron 5 of 6) 121169 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 140.25-23 chr14 55313555 55313719 + 1.5 NA intron (NM_152231, intron 1 of 1) THE1D|LTR|ERVL-MaLR 41483 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 171.5-91 chr8 90055665 90055835 + 1.5 NA Intergenic MIR3|SINE|MIR 27129 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 155.5-8 chr1 110342798 110342967 + 1.5 NA intron (NM_001201545, intron 1 of 1) intron (NM_001201545, intron 1 of 1) 3559 NM_001201545 64783 Hs.435947 NM_022768 ENSG00000162775 RBM15 OTT|OTT1|SPEN RNA binding motif protein 15 protein-coding 535.25 chr7 49963757 49964451 + 1.5 NA intron (NM_001159878, intron 7 of 7) L1MD|LINE|L1 129142 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 257.5-13 chr17 72580804 72581013 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 11896 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 147-16 chr11 85552821 85553003 + 1.5 NA intron (NM_001142699, intron 3 of 27) L1ME1|LINE|L1 74358 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 166-19 chr12 55436499 55436617 + 1.5 NA Intergenic L1ME1|LINE|L1 10304 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 138.5-60 chr2 122005204 122005398 + 1.5 NA Intergenic Intergenic 249650 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 162-63 chr8 145060607 145060726 + 1.5 NA Intergenic HERVK13-int|LTR|ERVK 8199 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 174.5-3 chr1 235827344 235827571 + 1.5 NA non-coding (NR_102436, exon 4 of 4) non-coding (NR_102436, exon 4 of 4) 25603 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 231.75-7 chr14 47933567 47933869 + 1.5 NA Intergenic Intergenic -138704 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 174-52 chr8 113456680 113456879 + 1.5 NA Intergenic Intergenic -19840 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 207.25 chr1 50831400 50831585 + 1.5 NA intron (NM_007051, intron 2 of 18) L2c|LINE|L2 128775 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 235.5-25 chr18 4450105 4450377 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 5025 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 156.5-46 chr3 65602614 65602822 + 1.5 NA intron (NM_001365904, intron 2 of 24) L1M5|LINE|L1 -291098 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 253.5-16 chr14 66118237 66118529 + 1.5 NA Intergenic L1ME3|LINE|L1 -367988 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 138.5-41 chr16 66832857 66832972 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -1938 NM_001286500 8883 Hs.460978 NM_003905 ENSG00000159593 NAE1 A-116A10.1|APPBP1|HPP1|ula-1 NEDD8 activating enzyme E1 subunit 1 protein-coding 188.5-15 chr14 68652858 68653256 + 1.5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -24270 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 235-40 chr6 142039691 142039873 + 1.5 NA Intergenic Intergenic 49017 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 136-38 chr2 205409553 205409665 + 1.5 NA intron (NM_205863, intron 19 of 21) intron (NM_205863, intron 19 of 21) -272891 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 243-26 chr5 151854218 151854483 + 1.5 NA intron (NM_000171, intron 6 of 8) intron (NM_000171, intron 6 of 8) 70501 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 261-46 chr8 125523814 125524052 + 1.5 NA Intergenic HERV16-int|LTR|ERVL 91724 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 133.5-22 chr12 40802285 40802396 + 1.5 NA intron (NM_001256063, intron 1 of 15) L2|LINE|L2 -25598 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 239.25-19 chr22 23583394 23583738 + 1.5 NA Intergenic Intergenic -3276 NM_001369906 3543 Hs.348935 NM_020070 ENSG00000128322 IGLL1 14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2 immunoglobulin lambda like polypeptide 1 protein-coding 367.75-2 chr20 15016470 15016843 + 1.5 NA intron (NM_001351663, intron 5 of 17) THE1A|LTR|ERVL-MaLR -87138 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 210.5-4 chr10 43421569 43421774 + 1.5 NA Intergenic Intergenic -4231 NR_145740 109616985 NR_145740 ENSG00000221400 SNORD3J - small nucleolar RNA, C/D box 3J snoRNA 247.5-9 chr13 39220719 39220975 + 1.5 NA Intergenic Intergenic 182391 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 234.5-16 chr15 85927187 85927369 + 1.5 NA Intergenic Intergenic 101643 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 310-9 chr14 63794091 63794354 + 1.5 NA Intergenic AluSq2|SINE|Alu -58743 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 163.75-22 chr14 69429700 69429853 + 1.5 NA intron (NM_001330185, intron 2 of 5) L1ME1|LINE|L1 31084 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 157.5-45 chr2 66276618 66276825 + 1.5 NA Intergenic Intergenic 81607 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 333-8 chr2 101960306 101960635 + 1.5 NA Intergenic MIR3|SINE|MIR -22995 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 211-11 chr13 66040146 66040333 + 1.5 NA Intergenic L1ME3A|LINE|L1 -73810 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 162.75-46 chr3 139701735 139701876 + 1.5 NA Intergenic Intergenic -23755 NM_001200047 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 190.25-49 chr6 34006674 34006979 + 1.5 NA Intergenic AluSx|SINE|Alu -6775 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 211.5-23 chr2 34110540 34110792 + 1.5 NA intron (NR_126403, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 43440 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 252-21 chr3 95842442 95842662 + 1.5 NA Intergenic L1MA4|LINE|L1 -159359 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 150-27 chr17 53521020 53521171 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -301832 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 327-13 chr6 47008578 47009021 + 1.5 NA intron (NM_153840, intron 11 of 14) intron (NM_153840, intron 11 of 14) 33533 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 189-44 chr7 8600417 8600615 + 1.5 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 166907 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 243.5-15 chr3 96144080 96144301 + 1.5 NA Intergenic Intergenic -215774 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 138.5-88 chr5 72809463 72809612 + 1.5 NA Intergenic L1MD1|LINE|L1 -7054 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 165.75-40 chr22 24881586 24881797 + 1.5 NA intron (NM_001098498, intron 14 of 23) (ATC)n|Simple_repeat|Simple_repeat 65004 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 222.25-15 chr2 125383349 125383616 + 1.5 NA Intergenic Intergenic 734503 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 214.5-18 chr17 59611092 59611441 + 1.5 NA Intergenic L1M5|LINE|L1 -8423 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 375-2 chr12 26705585 26705884 + 1.5 NA intron (NM_002223, intron 9 of 56) intron (NM_002223, intron 9 of 56) 127460 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 186.5-56 chr8 110228842 110229057 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -253178 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 141.5-76 chr3 97936175 97936360 + 1.5 NA intron (NM_153605, intron 18 of 21) intron (NM_153605, intron 18 of 21) 36164 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 289.75-13 chr2 136808518 136809026 + 1.5 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 43227 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 167.5-6 chr10 53294431 53294674 + 1.5 NA Intergenic Intergenic -522852 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 116-2 chr1 40471560 40471697 + 1.5 NA Intergenic L1MB2|LINE|L1 -5662 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 278-19 chr5 12541603 12541917 + 1.5 NA Intergenic Intergenic -33097 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 384.25-2 chr10 48831267 48831579 + 1.5 NA intron (NM_020945, intron 38 of 61) intron (NM_020945, intron 38 of 61) 82812 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 154.5-27 chr13 28918947 28919124 + 1.5 NA intron (NM_001366651, intron 2 of 14) L1MA3|LINE|L1 98696 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 209-34 chr8 19905417 19905563 + 1.5 NA Intergenic Intergenic -33763 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 189.5-18 chr15 70824725 70824967 + 1.5 NA Intergenic L2c|LINE|L2 -28393 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 181.75-21 chr3 1043388 1043720 + 1.5 NA Intergenic L1MB4|LINE|L1 -49470 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 178.75-22 chr17 19834788 19834945 + 1.5 NA intron (NM_014683, intron 10 of 26) AluJb|SINE|Alu 33070 NM_001142610 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 204.75-3 chr10 118294187 118294455 + 1.5 NA Intergenic Intergenic 48003 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 148-5 chr10 37826165 37826291 + 1.5 NA intron (NR_148007, intron 6 of 9) intron (NR_148007, intron 6 of 9) -31053 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 234-22 chr2 14727773 14728127 + 1.5 NA Intergenic Intergenic 95233 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 121.5-69 chr20 15146559 15146708 + 1.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -50207 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 263.25-18 chr7 50720228 50720405 + 1.5 NA intron (NM_001350816, intron 2 of 17) intron (NM_001350816, intron 2 of 17) 12037 NM_001001549 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 278.75-15 chr8 112707839 112708168 + 1.5 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 64510 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 221.25-2 chr1 199834238 199834499 + 1.5 NA Intergenic Intergenic -193342 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 203.25-26 chr2 21854448 21854693 + 1.5 NA Intergenic Intergenic -143918 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 219-33 chr6 148539341 148539564 + 1.5 NA intron (NM_001346506, intron 17 of 20) L1PB3|LINE|L1 30301 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 231.25-36 chr7 9982430 9982799 + 1.5 NA Intergenic Intergenic 348344 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 214.75-30 chr5 11945466 11945778 + 1.5 NA Intergenic (ATC)n|Simple_repeat|Simple_repeat -41176 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 225.5-31 chr3 4929460 4929641 + 1.5 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -23049 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 259.25-9 chr6 121172047 121172446 + 1.5 NA intron (NM_001367759, intron 23 of 33) THE1B|LTR|ERVL-MaLR 162234 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 180.75-46 chr4 64826300 64826584 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 178058 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 158.25-58 chr6 53573467 53573643 + 1.5 NA promoter-TSS (NR_110840) promoter-TSS (NR_110840) -280 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 274-6 chr14 43676499 43676729 + 1.5 NA Intergenic L1MA3|LINE|L1 830669 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 186.75-63 chr8 78406038 78406231 + 1.5 NA Intergenic Intergenic -110206 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 159.75-71 chr8 143202898 143203040 + 1.5 NA Intergenic Intergenic -10249 NM_178172 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 364.25-7 chr9 114595218 114595801 + 1.5 NA intron (NM_004888, intron 2 of 2) AluJb|SINE|Alu 7740 NM_004888 9550 Hs.388654 NM_004888 ENSG00000136888 ATP6V1G1 ATP6G|ATP6G1|ATP6GL|ATP6J|Vma10 ATPase H+ transporting V1 subunit G1 protein-coding 345-2 chr11 36957132 36957505 + 1.5 NA Intergenic Intergenic -359039 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 386.25-3 chr6 120486567 120487224 + 1.5 NA Intergenic Intergenic 471716 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 347-3 chr2 38191068 38191563 + 1.5 NA Intergenic Intergenic 60210 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 156.75-81 chr6 24937223 24937389 + 1.5 NA intron (NM_001286446, intron 1 of 13) MER20B|DNA|hAT-Charlie -1346 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 141-39 chr2 102515522 102515697 + 1.5 NA intron (NM_001011552, intron 8 of 11) MER96B|DNA|hAT-Tip100 42383 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 287.25-18 chr6 139094487 139094708 + 1.5 NA Intergenic MER6B|DNA|TcMar-Tigger -40483 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 232.5-10 chr11 111656236 111656691 + 1.5 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 54014 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 139.75-55 chr3 40414530 40414690 + 1.5 NA intron (NM_001248, intron 5 of 10) intron (NM_001248, intron 5 of 10) 27426 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 222-33 chr4 72661352 72661657 + 1.5 NA Intergenic Intergenic -92283 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 184-33 chr3 110033942 110034197 + 1.5 NA Intergenic L1M3f|LINE|L1 431241 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 345.25-4 chr3 58098937 58099388 + 1.5 NA intron (NM_001164318, intron 8 of 45) MIR|SINE|MIR 71473 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 220.5-49 chr8 128270712 128271063 + 1.5 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 120771 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 174.75-20 chr14 57476782 57477173 + 1.5 NA intron (NM_001283056, intron 5 of 6) MIR|SINE|MIR 16880 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 136.75-48 chr2 100934164 100934475 + 1.5 NA intron (NM_002518, intron 4 of 20) intron (NM_002518, intron 4 of 20) 42842 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 311.75-10 chr5 3044040 3044493 + 1.5 NA Intergenic Intergenic 126412 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 252.5-35 chr8 38724572 38724904 + 1.5 NA Intergenic MIR|SINE|MIR -3448 NR_148053 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 136.75-2 chr1 77198650 77198799 + 1.5 NA intron (NM_005482, intron 3 of 10) L1M5|LINE|L1 20706 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 216.5-11 chr14 51498543 51498824 + 1.5 NA intron (NM_001042481, intron 1 of 14) MLT1H|LTR|ERVL-MaLR 9555 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 375.75-2 chr10 6193079 6193448 + 1.5 NA intron (NM_001282630, intron 1 of 14) AluJr|SINE|Alu -9669 NM_004566 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 309-6 chr12 13558190 13558479 + 1.5 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -181589 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 192.75-9 chr13 37749877 37750068 + 1.5 NA intron (NM_003306, intron 2 of 10) L1ME3A|LINE|L1 120453 NM_001354799 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 121-14 chr11 21548252 21548352 + 1.5 NA intron (NM_001288713, intron 17 of 20) intron (NM_001288713, intron 17 of 20) -644783 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 146.5-15 chr11 26203678 26203849 + 1.5 NA intron (NM_001313726, intron 1 of 27) MER34|LTR|ERV1 14640 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 180.75-2 chr1 36480705 36480854 + 1.5 NA intron (NM_156039, intron 2 of 16) intron (NM_156039, intron 2 of 16) 2134 NM_172313 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 126.75-85 chr6 97279878 97279967 + 1.5 NA intron (NM_198468, intron 3 of 24) intron (NM_198468, intron 3 of 24) 3294 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 198.5-34 chr4 41725455 41725622 + 1.5 NA Intergenic Tigger16a|DNA|TcMar-Tigger 23432 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 200-33 chr4 107598856 107599276 + 1.5 NA Intergenic MER44B|DNA|TcMar-Tigger 121168 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 292.75-6 chr19 33261773 33262359 + 1.5 NA Intergenic Intergenic -36216 NM_019849 56301 Hs.58679 NM_019849 ENSG00000130876 SLC7A10 ASC1|HASC-1|asc-1 solute carrier family 7 member 10 protein-coding 248.25-38 chrX 101345378 101345647 + 1.5 NA TTS (NM_004085) TTS (NM_004085) 3230 NM_004085 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8A protein-coding 244-6 chr12 51737585 51737913 + 1.5 NA intron (NM_001369788, intron 12 of 25) HERVK9-int|LTR|ERVK 94168 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 279-6 chr10 27774466 27774726 + 1.5 NA Intergenic Intergenic -28777 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 371.25-2 chr20 11750836 11751099 + 1.5 NA Intergenic Intergenic 119748 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 246-4 chr10 50814480 50814728 + 1.5 NA intron (NM_001370131, intron 8 of 11) intron (NM_001370131, intron 8 of 11) 71023 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 207.5-53 chr6 123211432 123211686 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR 215324 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 165-13 chr11 114379292 114379501 + 1.5 NA intron (NR_120567, intron 1 of 2) intron (NR_120567, intron 1 of 2) 643 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 165.75-12 chr11 20054742 20054866 + 1.5 NA intron (NM_182964, intron 18 of 37) intron (NM_182964, intron 18 of 37) -5501 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 224.5-43 chrX 81612586 81612874 + 1.5 NA Intergenic L1PB1|LINE|L1 410628 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 208-26 chr3 43589570 43589851 + 1.5 NA intron (NM_001204833, intron 2 of 10) L1ME4b|LINE|L1 32216 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 308-4 chr14 20035176 20035554 + 1.5 NA promoter-TSS (NM_001004714) promoter-TSS (NM_001004714) -607 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 248.25-28 chr5 71919788 71920063 + 1.5 NA Intergenic L1MA4A|LINE|L1 -187550 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 248-10 chr2 103587933 103588209 + 1.5 NA Intergenic Intergenic -603642 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 279.75-8 chr14 65019476 65019788 + 1.5 NA intron (NM_002028, intron 4 of 11) intron (NM_002028, intron 4 of 11) -25056 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 250-2 chr1 171575184 171575485 + 1.5 NA intron (NM_015172, intron 25 of 33) intron (NM_015172, intron 25 of 33) -44429 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 123-65 chr8 53724313 53724460 + 1.5 NA intron (NM_213620, intron 13 of 13) MLT1J|LTR|ERVL-MaLR 118656 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 165-15 chr12 32687149 32687276 + 1.5 NA intron (NM_001330380, intron 1 of 18) L1MB5|LINE|L1 7911 NM_012062 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 113.25-92 chr4 93221402 93221495 + 1.5 NA intron (NM_001286838, intron 5 of 14) intron (NM_001286838, intron 5 of 14) -607305 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 152.25-3 chr1 102070149 102070314 + 1.5 NA Intergenic L4_B_Mam|LINE|RTE-X -72997 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 192-16 chr14 62803137 62803319 + 1.5 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 242230 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 161.5-23 chr11 81973872 81974117 + 1.5 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -83158 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 264.5-30 chr8 140064954 140065230 + 1.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 35443 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 233-12 chr12 19814085 19814260 + 1.5 NA Intergenic L1ME3G|LINE|L1 -200513 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 271.5-12 chr2 160658527 160658720 + 1.5 NA Intergenic L1ME1|LINE|L1 -164816 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 154.5-31 chr14 63979306 63979481 + 1.5 NA intron (NM_015180, intron 14 of 114) intron (NM_015180, intron 14 of 114) 115732 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 288.75-5 chr15 72185496 72185761 + 1.5 NA intron (NM_001012642, intron 1 of 11) L1ME4b|LINE|L1 12159 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 215-5 chr10 34581655 34581944 + 1.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 233497 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 145.5-46 chr2 67444099 67444228 + 1.5 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 46830 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 246-15 chr3 32124445 32124798 + 1.5 NA intron (NM_015141, intron 1 of 7) intron (NM_015141, intron 1 of 7) 18110 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 143-40 chr2 114104880 114105106 + 1.5 NA Intergenic L1MB7|LINE|L1 -125009 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 165-4 chr1 233740686 233740882 + 1.5 NA Intergenic L1ME2|LINE|L1 116632 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 134-44 chr20 46255260 46255427 + 1.5 NA intron (NM_021248, intron 1 of 11) MIRc|SINE|MIR 53155 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 385.75-2 chr7 89722709 89723316 + 1.5 NA Intergenic Intergenic -396388 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 410-5 chr3 111409751 111410045 + 1.5 NA Intergenic L1PB1|LINE|L1 -132299 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 256-28 chr8 123310587 123310923 + 1.5 NA Intergenic LTR33|LTR|ERVL -35214 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 215.5-10 chr12 5406610 5406808 + 1.5 NA Intergenic Intergenic -25399 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 139.25-59 chr3 180996676 180996780 + 1.5 NA Intergenic Intergenic -6954 NR_033722 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 279-15 chr20 36086648 36086941 + 1.5 NA Intergenic MIR|SINE|MIR -4620 NM_001258331 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 173.25-22 chr16 81951543 81951715 + 1.5 NA intron (NM_002661, intron 31 of 32) L1M5|LINE|L1 59841 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 260.25-7 chr18 73575643 73575877 + 1.5 NA Intergenic L1MA8|LINE|L1 250819 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 204.75-21 chr18 11895624 11895881 + 1.5 NA intron (NR_040242, intron 3 of 12) AluJo|SINE|Alu 12565 NR_040243 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 120-69 chr4 83272494 83272634 + 1.5 NA intron (NM_015697, intron 3 of 6) MIR|SINE|MIR 12231 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 220-30 chr6 70409303 70409611 + 1.5 NA Intergenic L1PA16|LINE|L1 -3947 NM_001351600 57579 Hs.211700 NM_020819 ENSG00000082269 FAM135A KIAA1411 family with sequence similarity 135 member A protein-coding 141.75-8 chr10 65797494 65797670 + 1.5 NA Intergenic Intergenic 226157 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 149-9 chr11 50386073 50386418 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -22902 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 285-13 chr3 124580440 124580781 + 1.5 NA intron (NM_001024660, intron 34 of 59) intron (NM_001024660, intron 34 of 59) -4048 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 156-13 chr10 52417818 52417940 + 1.5 NA Intergenic Intergenic 37393 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 151.5-92 chrX 99792249 99792437 + 1.5 NA Intergenic L1PA16|LINE|L1 617930 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 138.75-62 chr5 74188702 74188856 + 1.5 NA Intergenic Intergenic 119546 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 367.25-5 chr16 7360176 7360494 + 1.5 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 27490 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 293.5-23 chr8 143231422 143231803 + 1.5 NA Intergenic L1MD1|LINE|L1 -15327 NM_173832 286128 Hs.668016 NM_173832 ENSG00000181638 ZFP41 ZNF753|zfp-41 ZFP41 zinc finger protein protein-coding 267-14 chr2 208032167 208032400 + 1.5 NA Intergenic Intergenic -6756 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 164.5-95 chr8 66794153 66794318 + 1.5 NA intron (NM_001204173, intron 4 of 18) intron (NM_001204173, intron 4 of 18) 19030 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 234.25-25 chr3 171894132 171894351 + 1.5 NA intron (NR_046852, intron 2 of 2) intron (NR_046852, intron 2 of 2) 6499 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 274.5-15 chr2 62672032 62672514 + 1.5 NA Intergenic Intergenic -1605 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 141.5-66 chr2 193040859 193041047 + 1.5 NA Intergenic Intergenic 291108 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 299-9 chr2 58464625 58464880 + 1.5 NA Intergenic Intergenic -56001 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 185.25-12 chr12 20434997 20435151 + 1.5 NA intron (NM_000921, intron 1 of 15) L2a|LINE|L2 65829 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 133-58 chr7 26929833 26929973 + 1.5 NA Intergenic Intergenic -65313 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 180.5-3 chr1 215741601 215741745 + 1.5 NA intron (NM_206933, intron 59 of 71) intron (NM_206933, intron 59 of 71) 174369 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 120.5-50 chr2 152505284 152505425 + 1.5 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 170180 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 216.25-15 chr16 55420795 55421001 + 1.5 NA Intergenic Intergenic 41399 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 405.5-5 chr7 48078280 48078589 + 1.5 NA Intergenic LTR39|LTR|ERV1 -10169 NM_001362774 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 294-5 chr16 53569630 53569983 + 1.5 NA Intergenic AluSq2|SINE|Alu -66502 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 201-33 chr3 100705849 100706097 + 1.5 NA Intergenic Intergenic -3317 NM_001007565 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 143.25-54 chr4 62633183 62633347 + 1.5 NA Intergenic L1PA16|LINE|L1 -471500 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 210-41 chr8 114621411 114621616 + 1.5 NA Intergenic L1MEf|LINE|L1 1046500 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 250.5-32 chr8 31227349 31227644 + 1.5 NA Intergenic HAL1|LINE|L1 -194140 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 203.25-10 chr11 76047104 76047328 + 1.5 NA intron (NM_003369, intron 12 of 14) L2c|LINE|L2 159286 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 141.5-119 chr9 36120384 36120530 + 1.5 NA intron (NM_021111, intron 18 of 20) intron (NM_021111, intron 18 of 20) -16079 NM_001287012 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 245.5-22 chr3 121921320 121921629 + 1.5 NA intron (NM_021082, intron 7 of 21) MIRb|SINE|MIR 27073 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 475.25 chr3 167960832 167961370 + 1.5 NA Intergenic Intergenic 65153 NR_033843 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 308.75-8 chr5 49599352 49599871 + 1.5 NA Intergenic BSR/Beta|Satellite|Satellite 841677 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 199-49 chr8 119362955 119363265 + 1.5 NA Intergenic Intergenic 37939 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 179.5-48 chr17 76427221 76427468 + 1.5 NA intron (NM_022066, intron 1 of 17) L1MEd|LINE|L1 25808 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 251.25-24 chr5 16268374 16268593 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 88242 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 191.5-67 chr8 69722529 69722727 + 1.5 NA intron (NM_001146009, intron 3 of 7) intron (NM_001146009, intron 3 of 7) 110541 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 201.25-6 chr11 56641433 56641691 + 1.5 NA TTS (NM_001002925) TTS (NM_001002925) 877 NM_001002925 338675 Hs.449692 NM_001002925 ENSG00000172464 OR5AP2 OR9J1 olfactory receptor family 5 subfamily AP member 2 protein-coding 282-7 chr11 84738102 84738461 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -17339 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 336.75-3 chr18 65425231 65425590 + 1.5 NA Intergenic Intergenic -324842 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 226-6 chr10 72384370 72384596 + 1.5 NA intron (NM_001195519, intron 5 of 6) intron (NM_001195519, intron 5 of 6) -29564 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 435 chr10 78757246 78757639 + 1.5 NA Intergenic Intergenic 310006 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 152.5-20 chr11 60936614 60936777 + 1.5 NA TTS (NR_027391) TTS (NR_027391) 12235 NM_178031 54972 Hs.118552 NM_017870 ENSG00000006118 TMEM132A GBP|HSPA5BP1 transmembrane protein 132A protein-coding 309-14 chr3 194529373 194529616 + 1.5 NA Intergenic AluSx|SINE|Alu 42354 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 297.5-8 chr4 105923362 105923572 + 1.5 NA intron (NM_001184690, intron 3 of 12) intron (NM_001184690, intron 3 of 12) 27996 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 292.5-2 chr10 109839363 109839678 + 1.5 NA Intergenic Intergenic 83726 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 175.5-3 chr1 155398955 155399142 + 1.5 NA intron (NM_018489, intron 6 of 27) intron (NM_018489, intron 6 of 27) -34132 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 195-13 chr12 5535631 5535858 + 1.5 NA Intergenic Intergenic 41612 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 190-47 chr7 32238132 32238307 + 1.5 NA intron (NM_001322059, intron 1 of 17) L1M5|LINE|L1 61109 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 328.5-18 chr6 143441671 143442017 + 1.5 NA 5' UTR (NM_001286259, exon 1 of 6) 5' UTR (NM_001286259, exon 1 of 6) 833 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 266.25-2 chr1 100272867 100273147 + 1.5 NA intron (NM_003729, intron 4 of 10) intron (NM_003729, intron 4 of 10) -6833 NR_110434 100506007 Hs.192268 NR_110434 RTCA-AS1 - RTCA antisense RNA 1 ncRNA 174.75-9 chr11 90242276 90242425 + 1.5 NA Intergenic L1MEc|LINE|L1 -8882 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 247-9 chr14 88634665 88634888 + 1.5 NA intron (NM_183387, intron 31 of 42) intron (NM_183387, intron 31 of 42) 40356 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 184.25-40 chr5 84132614 84132795 + 1.5 NA intron (NM_001278642, intron 4 of 9) intron (NM_001278642, intron 4 of 9) 252163 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 211.5-55 chr7 94235309 94235513 + 1.5 NA Intergenic Intergenic 156781 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 166.75-52 chr5 160482469 160482743 + 1.5 NA intron (NR_132748, intron 1 of 1) L1MB8|LINE|L1 -2746 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 184.5-67 chr6 2376576 2376812 + 1.5 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 130941 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 184-9 chr10 57205023 57205191 + 1.5 NA Intergenic Intergenic 99452 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 202.75-12 chr17 80217819 80218074 + 1.5 NA intron (NR_148201, intron 1 of 6) intron (NR_148201, intron 1 of 6) 2387 NM_000199 6448 Hs.31074 NM_000199 ENSG00000181523 SGSH HSS|MPS3A|SFMD N-sulfoglucosamine sulfohydrolase protein-coding 204.5-4 chr1 178717847 178717983 + 1.5 NA Intergenic Intergenic -7232 NM_001286247 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 289.5-20 chr5 7948254 7948543 + 1.5 NA Intergenic L1ME1|LINE|L1 79250 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 139.75-59 chr4 111104894 111105004 + 1.5 NA Intergenic Charlie17|DNA|hAT-Charlie -244302 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 201-13 chr12 24459165 24459380 + 1.5 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 103219 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 206.25-15 chr17 50754128 50754331 + 1.5 NA 3' UTR (NM_016424, exon 10 of 10) 3' UTR (NM_016424, exon 10 of 10) 13289 NM_001358683 55018 Hs.389460 NM_017928 ENSG00000167117 ANKRD40CL C17orf73|LINC00483 ANKRD40 C-terminal like protein-coding 245.25-19 chr20 53261117 53261376 + 1.5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 75963 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 267.75-5 chr18 70074157 70074342 + 1.5 NA intron (NM_001318520, intron 32 of 47) MER5A|DNA|hAT-Charlie -117450 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 202-20 chr5 38836742 38836918 + 1.5 NA intron (NR_109951, intron 1 of 3) L1MC|LINE|L1 8999 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 326.5-8 chr2 162769572 162769891 + 1.5 NA intron (NR_110258, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat 795 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 121-64 chr6 163399302 163399386 + 1.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR 14606 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated ncRNA 227.5-30 chr20 62233470 62233821 + 1.5 NA non-coding (NR_160555, exon 2 of 4) non-coding (NR_160555, exon 2 of 4) -4876 NM_014835 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 161.5-77 chr6 135138384 135138634 + 1.5 NA Intergenic AluSc|SINE|Alu -42799 NM_001130172 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 179.25-42 chr7 4054978 4055110 + 1.5 NA intron (NM_152744, intron 19 of 44) L1MD|LINE|L1 -74641 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 233.25-33 chr7 83468271 83468543 + 1.5 NA intron (NM_001178129, intron 3 of 16) intron (NM_001178129, intron 3 of 16) 173024 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 166.5-34 chr14 76065238 76065428 + 1.5 NA intron (NM_001102564, intron 5 of 8) L1ME1|LINE|L1 79570 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 179.25-41 chr7 2986984 2987119 + 1.5 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 56816 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 180-45 chr22 21633860 21634023 + 1.5 NA intron (NM_001331066, intron 2 of 3) intron (NM_001331066, intron 2 of 3) 1144 NM_001331066 164592 Hs.131615 NM_152612 ENSG00000161180 CCDC116 - coiled-coil domain containing 116 protein-coding 125.25-61 chr5 3767781 3767903 + 1.5 NA Intergenic Intergenic 172010 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 372.75-5 chr3 58798220 58798577 + 1.5 NA intron (NM_001351532, intron 14 of 14) Tigger1|DNA|TcMar-Tigger -26073 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 127.5-122 chr8 48808512 48808673 + 1.5 NA Intergenic L1MDa|LINE|L1 -73281 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 178.5-57 chr4 95094537 95094740 + 1.5 NA intron (NM_001256794, intron 1 of 10) MIR|SINE|MIR 3147 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 234.25-16 chr2 37589306 37589750 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 82671 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 401.5-4 chr8 91827940 91828367 + 1.5 NA Intergenic Intergenic 189527 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 352.5-12 chr7 7874505 7874978 + 1.5 NA intron (NM_001302350, intron 4 of 4) (AATA)n|Simple_repeat|Simple_repeat 94011 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 362.25-7 chr3 145145769 145146152 + 1.5 NA Intergenic Intergenic 923225 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 277.5-20 chr6 112405394 112405660 + 1.5 NA Intergenic Intergenic 58197 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 141.5-8 chr1 214697915 214698021 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 94773 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 188.5-29 chr2 138518351 138518690 + 1.5 NA intron (NM_001001664, intron 1 of 10) intron (NM_001001664, intron 1 of 10) 16750 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 347.25-4 chr2 155873653 155873936 + 1.5 NA Intergenic Intergenic 381137 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 186.75-12 chr13 101815050 101815268 + 1.5 NA intron (NM_175929, intron 3 of 4) intron (NM_175929, intron 3 of 4) 101486 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 137-39 chr2 139551136 139551287 + 1.5 NA Intergenic MER65-int|LTR|ERV1 653887 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 187.5-80 chr8 36034406 36034671 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -324218 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 220.5-11 chr12 7685563 7685767 + 1.5 NA Intergenic Intergenic 10110 NM_020634 9573 Hs.86232 NM_020634 ENSG00000184344 GDF3 KFS3|MCOP7|MCOPCB6 growth differentiation factor 3 protein-coding 138.25-9 chr10 12414673 12414884 + 1.5 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 25796 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 187-58 chr6 146204105 146204241 + 1.5 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 174975 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 153.75-43 chr2 185044755 185044929 + 1.5 NA Intergenic L1P3b|LINE|L1 122230 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 250.75-16 chr4 174458575 174458799 + 1.5 NA Intergenic L1MA9|LINE|L1 34892 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 193.5-53 chr4 57603225 57603461 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 177471 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 178.5-84 chr8 88178590 88178813 + 1.5 NA intron (NM_005941, intron 3 of 9) intron (NM_005941, intron 3 of 9) 148782 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 156-34 chr17 41855189 41855357 + 1.5 NA exon (NM_018143, exon 2 of 2) exon (NM_018143, exon 2 of 2) 10150 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 178.5-7 chr10 31629862 31629995 + 1.5 NA Intergenic L1MB3|LINE|L1 -230173 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 139.5-47 chr2 175429429 175429570 + 1.5 NA Intergenic L1ME1|LINE|L1 -247789 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 228.25-38 chr8 86420886 86421308 + 1.5 NA intron (NM_007013, intron 9 of 24) intron (NM_007013, intron 9 of 24) 78550 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 187.25-3 chr1 90349621 90349822 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -308029 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 200.75-39 chr7 35404751 35404958 + 1.5 NA Intergenic Intergenic 90999 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 136-16 chr14 47513765 47513886 + 1.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 161129 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 247.5-16 chr2 128144318 128144608 + 1.5 NA intron (NR_027671, intron 17 of 40) intron (NR_027671, intron 17 of 40) 53263 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 348.5-9 chr9 119770158 119770499 + 1.5 NA Intergenic Intergenic -164732 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 297.5-10 chr5 66394401 66394615 + 1.5 NA Intergenic Intergenic 117096 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 261-35 chr5 26712551 26712752 + 1.5 NA Intergenic Intergenic 325935 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 366.5-7 chr3 133465836 133466143 + 1.5 NA intron (NR_135276, intron 1 of 4) L1ME4b|LINE|L1 -10213 NR_135278 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 212.25-6 chr1 197715340 197715617 + 1.5 NA intron (NR_125340, intron 2 of 19) intron (NR_125340, intron 2 of 19) 60002 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 191.5-37 chr21 33354725 33354936 + 1.5 NA intron (NM_000629, intron 10 of 10) intron (NM_000629, intron 10 of 10) 29860 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 187-3 chr10 89522101 89522341 + 1.5 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 13373 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 481-2 chr11 93953030 93953689 + 1.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -67995 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 292-16 chr8 134414883 134415261 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -182999 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 219-20 chr22 34162048 34162233 + 1.5 NA Intergenic L2a|LINE|L2 -239252 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 307-14 chr5 112802203 112802550 + 1.5 NA intron (NM_001354895, intron 8 of 15) intron (NM_001354895, intron 8 of 15) -58812 NM_001204194 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 320.25-5 chr2 185743173 185743557 + 1.5 NA intron (NM_173651, intron 3 of 22) intron (NM_173651, intron 3 of 22) -2888 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 197-46 chr7 92496434 92496707 + 1.5 NA intron (NM_001282677, intron 16 of 22) intron (NM_001282677, intron 16 of 22) -18624 NM_001130925 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 230.5-28 chr2 55391180 55391388 + 1.5 NA intron (NM_001254943, intron 2 of 33) L1MEc|LINE|L1 28572 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 147.75-47 chr3 60651492 60651644 + 1.5 NA intron (NM_001320900, intron 5 of 9) (TAAT)n|Simple_repeat|Simple_repeat -33698 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 196-5 chr10 50897245 50897459 + 1.5 NA Intergenic MIRb|SINE|MIR -11677 NM_001198818 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 231.5-12 chr15 27389640 27389948 + 1.5 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -228475 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 262-8 chr10 106207328 106207747 + 1.5 NA Intergenic Intergenic 67372 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 150.5-31 chr15 56341927 56342042 + 1.5 NA Intergenic Intergenic -23440 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 323.75-2 chr10 24609749 24610057 + 1.5 NA intron (NM_001367447, intron 8 of 24) intron (NM_001367447, intron 8 of 24) 12940 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 162.75-42 chr3 15644998 15645208 + 1.5 NA exon (NM_001281724, exon 6 of 6) exon (NM_001281724, exon 6 of 6) 43134 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 177-57 chr8 77778868 77779048 + 1.5 NA Intergenic Intergenic 328261 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 174 chr1 64099387 64099505 + 1.5 NA intron (NR_110666, intron 5 of 5) intron (NR_110666, intron 5 of 5) 12759 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 113.75-27 chr11 113858369 113858465 + 1.5 NA intron (NM_020886, intron 1 of 24) intron (NM_020886, intron 1 of 24) 17155 NM_001346253 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 227.25-10 chr12 14055853 14056008 + 1.5 NA Intergenic Intergenic -75574 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 197.25-36 chr2 73064993 73065220 + 1.5 NA intron (NM_001330402, intron 1 of 12) AluJr|SINE|Alu -5934 NM_001330407 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 127.5-125 chr8 120529184 120529372 + 1.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 83859 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 131.5-63 chr3 178972145 178972293 + 1.5 NA Intergenic L1MD2|LINE|L1 99590 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 278-10 chr14 59275400 59275647 + 1.5 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 12082 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 345-4 chr12 112151659 112151961 + 1.5 NA exon (NM_001143906, exon 10 of 12) exon (NM_001143906, exon 10 of 12) 11511 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 321.5-8 chr5 22765617 22765980 + 1.5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 87546 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 116-9 chr10 62714056 62714133 + 1.5 NA Intergenic L1PA17|LINE|L1 -90626 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 223-5 chr1 220844345 220844602 + 1.5 NA intron (NR_046901, intron 1 of 2) intron (NR_046901, intron 1 of 2) 15218 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 114.75-37 chr15 67284050 67284159 + 1.5 NA intron (NM_001322475, intron 3 of 17) L1MA3|LINE|L1 -28906 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 366-14 chr8 27163779 27164289 + 1.5 NA Intergenic Intergenic 94370 NM_001283053 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 184-2 chr1 80817912 80818129 + 1.5 NA Intergenic Intergenic 176733 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 131.75-13 chr11 14450049 14450274 + 1.5 NA Intergenic L2a|LINE|L2 49697 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 128-26 chr2 46550319 46550463 + 1.5 NA intron (NM_012249, intron 2 of 4) intron (NM_012249, intron 2 of 4) -7814 NM_001371281 143.5-59 chr2 240145358 240145628 + 1.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -4835 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 237.5-17 chr15 75596803 75597110 + 1.5 NA Intergenic Intergenic -17641 NM_002833 5780 Hs.445775 NM_002833 ENSG00000169410 PTPN9 MEG2|PTPMEG2 protein tyrosine phosphatase non-receptor type 9 protein-coding 183.75-18 chr14 66018586 66018748 + 1.5 NA Intergenic Intergenic -467704 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 369.75-3 chr13 42709521 42709875 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -71852 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 264.75-7 chr16 10005665 10005981 + 1.5 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 176244 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 154.5-65 chr6 12230154 12230335 + 1.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -60117 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 275.5-7 chr11 77172953 77173358 + 1.5 NA intron (NM_001127180, intron 16 of 48) MIRb|SINE|MIR 44909 NM_001369365 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 310-2 chr1 81583347 81583704 + 1.5 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -25823 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 358.5-6 chr2 65852418 65852801 + 1.5 NA Intergenic Intergenic -420010 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 252.75-15 chr2 156555283 156555511 + 1.5 NA intron (NM_000408, intron 8 of 16) intron (NM_000408, intron 8 of 16) 119018 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 315.75-2 chr19 3444830 3445271 + 1.5 NA intron (NM_001245002, intron 6 of 10) (CATG)n|Simple_repeat|Simple_repeat 35475 NM_001136503 284422 Hs.130714 NM_001136503 ENSG00000095932 SMIM24 C19orf77|HSPC323|MARDI small integral membrane protein 24 protein-coding 208.5-13 chr11 91065293 91065656 + 1.5 NA Intergenic Intergenic -196272 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 149.5-9 chr1 185878386 185878660 + 1.5 NA intron (NM_031935, intron 4 of 106) L1PB4|LINE|L1 144132 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 230.5-20 chr15 94228340 94228513 + 1.5 NA Intergenic Intergenic -69775 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 314.25-8 chr4 125721368 125721692 + 1.5 NA Intergenic Intergenic 214271 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 244.5-40 chr8 89210060 89210328 + 1.5 NA Intergenic L1MA9|LINE|L1 547517 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 220.25-33 chr4 72751579 72751789 + 1.5 NA Intergenic L1PA13|LINE|L1 -182463 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 186-46 chr6 81910288 81910511 + 1.5 NA intron (NR_149135, intron 3 of 3) MIR|SINE|MIR 23081 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 145-33 chr2 63604254 63604395 + 1.5 NA intron (NM_001316374, intron 5 of 8) intron (NM_001316374, intron 5 of 8) 15173 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 281-16 chr3 59073976 59074346 + 1.5 NA Intergenic L2a|LINE|L2 -24129 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 140-40 chr21 33752503 33752652 + 1.5 NA intron (NM_001001132, intron 7 of 29) intron (NM_001001132, intron 7 of 29) 110076 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 265.5-26 chr8 90908919 90909288 + 1.5 NA intron (NM_022351, intron 5 of 12) HAL1M8|LINE|L1 75974 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 269.25-16 chr4 73825596 73825830 + 1.5 NA Intergenic Intergenic -10965 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 128.25-78 chr8 47513218 47513308 + 1.5 NA intron (NM_001352958, intron 10 of 21) intron (NM_001352958, intron 10 of 21) -140825 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 244.5-24 chr3 102348518 102348752 + 1.5 NA Intergenic Intergenic -86380 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 252.5-15 chr18 2676957 2677238 + 1.5 NA intron (NM_015295, intron 5 of 47) L1MC4|LINE|L1 21210 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 167.25-82 chr8 80423487 80423654 + 1.5 NA Intergenic Intergenic -62023 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 290.5-8 chr11 76995381 76995598 + 1.5 NA intron (NM_001300953, intron 5 of 9) intron (NM_001300953, intron 5 of 9) -38909 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 279-14 chr2 205995508 205996020 + 1.5 NA 3' UTR (NM_017759, exon 11 of 11) 3' UTR (NM_017759, exon 11 of 11) 90410 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 247.5-12 chr17 79000755 79001026 + 1.5 NA intron (NM_001159772, intron 1 of 5) intron (NM_001159772, intron 1 of 5) 8874 NM_001159773 124583 Hs.8859 NM_138793 ENSG00000171302 CANT1 DBQD|DBQD1|EDM7|SCAN-1|SCAN1|SHAPY calcium activated nucleotidase 1 protein-coding 225.5-48 chr7 79394382 79394623 + 1.5 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -58455 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 264.75 chr1 105295453 105295651 + 1.5 NA Intergenic Intergenic 323383 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 201.5-29 chr2 44968497 44968675 + 1.5 NA Intergenic Intergenic -26708 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 133-44 chr20 38551520 38551615 + 1.5 NA intron (NM_001282917, intron 21 of 29) intron (NM_001282917, intron 21 of 29) -29630 NR_130907 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 313 chr10 75959640 75959947 + 1.5 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 177032 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 287.25-15 chr5 88823572 88823952 + 1.5 NA exon (NM_001364347, exon 2 of 11) exon (NM_001364347, exon 2 of 11) 165 NM_001193348 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 419-2 chr14 45215811 45216289 + 1.5 NA intron (NM_018353, intron 13 of 16) intron (NM_018353, intron 13 of 16) 37152 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 220.75-38 chr9 74070856 74071201 + 1.5 NA Intergenic L1PA15|LINE|L1 -300503 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 135-66 chr6 146953996 146954122 + 1.5 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -150235 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 183.5-69 chr5 96883222 96883371 + 1.5 NA intron (NM_001329229, intron 2 of 17) LTR16A2|LTR|ERVL 7357 NM_001329233 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 233.25-30 chr6 62291137 62291374 + 1.5 NA Intergenic Intergenic -5028 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 178.75-51 chr6 61037105 61037426 + 1.5 NA Intergenic SATR1|Satellite|Satellite -536865 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 246-33 chr8 42242970 42243250 + 1.5 NA Intergenic LTR36|LTR|ERV1 27851 NR_125823 101929897 Hs.60288 NR_125823 ENSG00000253408 LOC101929897 - uncharacterized LOC101929897 ncRNA 238-32 chr7 42206564 42206795 + 1.5 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 30530 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 295-4 chr18 74851199 74851568 + 1.5 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 220420 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 221-17 chr17 69624194 69624413 + 1.5 NA intron (NR_109972, intron 2 of 4) intron (NR_109972, intron 2 of 4) 30316 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 344.75-4 chr3 97401443 97401697 + 1.5 NA intron (NM_001080448, intron 5 of 17) L1MA5|LINE|L1 -38037 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 166.5-73 chr4 89506090 89506267 + 1.5 NA Intergenic Intergenic -198378 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 152-20 chr12 24953437 24953538 + 1.5 NA Intergenic Intergenic -4386 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 146.5-51 chr2 148609822 148610038 + 1.5 NA Intergenic Intergenic -34821 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 165-53 chr8 118992015 118992205 + 1.5 NA intron (NM_001324095, intron 1 of 7) MIR|SINE|MIR 39847 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 305-24 chr9 19847593 19847828 + 1.5 NA Intergenic Intergenic -60691 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 220-31 chr7 87203389 87203665 + 1.5 NA intron (NR_138030, intron 1 of 3) AluJr|SINE|Alu 16205 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 230.25-16 chr22 28401729 28401920 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -58045 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 189-11 chr10 81003196 81003395 + 1.5 NA Intergenic L1MA9|LINE|L1 353498 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 250-22 chr4 106100559 106100940 + 1.5 NA intron (NM_001290768, intron 25 of 26) L2c|LINE|L2 -78271 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 180-49 chr4 93094573 93094815 + 1.5 NA intron (NM_001510, intron 3 of 15) intron (NM_001510, intron 3 of 15) -734059 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 199-36 chr5 5818650 5818959 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 396127 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 291.75-18 chr8 82951370 82951676 + 1.5 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 39419 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 117-40 chr2 156112474 156112617 + 1.5 NA intron (NR_110250, intron 1 of 3) L1MB8|LINE|L1 142386 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 145.5-75 chr5 56479960 56480124 + 1.5 NA intron (NR_104664, intron 1 of 4) MER45A|DNA|hAT-Tip100 1727 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 164.5-44 chr2 234547182 234547366 + 1.5 NA Intergenic Intergenic -50193 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 186-37 chr4 156442910 156443084 + 1.5 NA Intergenic Intergenic -489131 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 142.5-81 chr5 145079732 145079862 + 1.5 NA Intergenic LTR32|LTR|ERVL 755545 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 421-3 chr2 183875008 183875539 + 1.5 NA Intergenic Intergenic -503702 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 233.25-11 chr15 99299287 99299442 + 1.5 NA intron (NM_001321677, intron 5 of 8) intron (NM_001321677, intron 5 of 8) 41839 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 259-10 chr12 30805069 30805347 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 9527 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 237-28 chr5 31508079 31508268 + 1.5 NA intron (NM_013235, intron 9 of 34) intron (NM_013235, intron 9 of 34) 23920 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 188.75-8 chr12 113988712 113988897 + 1.5 NA Intergenic Intergenic -22479 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 326.75-9 chr22 47725973 47726292 + 1.5 NA intron (NR_122046, intron 7 of 8) L1ME2|LINE|L1 94458 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 164.5-73 chr5 132247062 132247206 + 1.5 NA Intergenic L1MEf|LINE|L1 -10524 NM_001131027 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 128.5-13 chr11 110590456 110590627 + 1.5 NA intron (NM_020809, intron 12 of 15) intron (NM_020809, intron 12 of 15) 121284 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 132.5-86 chr4 126210499 126210610 + 1.5 NA Intergenic Intergenic 703295 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 229.5-5 chr1 172557688 172557853 + 1.5 NA exon (NM_016227, exon 6 of 23) exon (NM_016227, exon 6 of 23) 24620 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 168-66 chr8 122512723 122512984 + 1.5 NA intron (NR_131202, intron 2 of 3) MIR|SINE|MIR 55791 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 189.5-34 chr20 2026474 2026669 + 1.5 NA Intergenic MER52A|LTR|ERV1 -32286 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 162.75-62 chr6 15747365 15747535 + 1.5 NA Intergenic L1MC4a|LINE|L1 -84392 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 308-7 chr21 33121168 33121503 + 1.5 NA intron (NR_109961, intron 1 of 2) MIR|SINE|MIR 2365 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 185-5 chr11 40084638 40084786 + 1.5 NA Intergenic Intergenic 208418 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 132-82 chr9 87273104 87273205 + 1.5 NA Intergenic L1MB3|LINE|L1 124510 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 216.5-47 chrX 137221080 137221275 + 1.5 NA Intergenic MER113|DNA|hAT-Charlie -189503 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 240-8 chr13 114193065 114193523 + 1.5 NA Intergenic Intergenic -41551 NM_001330105 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 246.75-13 chr2 74838055 74838354 + 1.5 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 5549 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 179-62 chrX 88980939 88981195 + 1.5 NA Intergenic Intergenic 233842 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 254-14 chr5 96059351 96059738 + 1.5 NA intron (NR_130776, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL -19594 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 164.5-91 chr7 80477305 80477496 + 1.5 NA intron (NM_001102386, intron 4 of 7) intron (NM_001102386, intron 4 of 7) 34664 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 335-7 chr3 104752822 104753076 + 1.5 NA Intergenic L2a|LINE|L2 -613764 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 130-71 chr6 63760395 63760520 + 1.5 NA intron (NM_001292009, intron 41 of 43) intron (NM_001292009, intron 41 of 43) -46379 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 156-38 chr2 30213630 30213791 + 1.5 NA Intergenic Intergenic -17824 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 188.5-8 chr11 24500267 24500470 + 1.5 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 3315 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 150.25-73 chr8 86107165 86107332 + 1.5 NA intron (NM_152565, intron 1 of 7) intron (NM_152565, intron 1 of 7) 8338 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 335.5-4 chr16 80248555 80248989 + 1.5 NA intron (NR_120307, intron 2 of 5) MER53|DNA|hAT -291962 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 192.5-20 chr15 23516267 23516529 + 1.5 NA Intergenic HERV35I-int|LTR|ERV1 45733 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 202.5-23 chr22 25024424 25024619 + 1.5 NA Intergenic Intergenic -3453 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 147-33 chr17 81085234 81085389 + 1.5 NA intron (NM_001144888, intron 4 of 13) intron (NM_001144888, intron 4 of 13) 40062 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 216-38 chr7 23353923 23354105 + 1.5 NA intron (NM_006547, intron 5 of 14) AluSq|SINE|Alu -42432 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 148.5-76 chr5 6399806 6399927 + 1.5 NA Intergenic Intergenic -21319 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 236.25-7 chr12 67423425 67423599 + 1.5 NA Intergenic LTR85b|LTR|Gypsy? 19047 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 289.25-9 chr2 202494035 202494240 + 1.5 NA intron (NM_001204, intron 3 of 12) intron (NM_001204, intron 3 of 12) 117810 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 184-13 chr11 25848812 25849000 + 1.5 NA Intergenic L1M3c|LINE|L1 -340217 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 170.5-14 chr10 69597820 69598011 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -24493 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 237.75-25 chr2 163700070 163700347 + 1.5 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 35800 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 306.5-3 chr19 40033887 40034093 + 1.5 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 22241 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 208.5-48 chr3 62444573 62444750 + 1.5 NA intron (NM_003716, intron 27 of 29) intron (NM_003716, intron 27 of 29) -71111 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 173-28 chr2 71977454 71977716 + 1.5 NA Intergenic L1PA5|LINE|L1 170277 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 198.5-41 chr5 91889506 91889705 + 1.5 NA Intergenic Intergenic -506288 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 153.75-66 chr5 100469268 100469399 + 1.5 NA Intergenic L1M4c|LINE|L1 -66041 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 188-51 chr9 70779707 70779888 + 1.5 NA intron (NM_001366143, intron 7 of 25) intron (NM_001366143, intron 7 of 25) 30287 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 131.75-69 chr6 85458775 85458874 + 1.5 NA intron (NM_002526, intron 1 of 8) intron (NM_002526, intron 1 of 8) 8741 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 133.5-78 chr4 60949432 60949563 + 1.5 NA Intergenic Intergenic 26878 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 251-17 chr22 28760101 28760500 + 1.5 NA Intergenic Intergenic -12374 NM_001284263 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 268-2 chr1 245275787 245276007 + 1.5 NA intron (NM_018012, intron 2 of 14) L1M4c|LINE|L1 -41380 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 223-17 chr16 64660763 64661107 + 1.5 NA Intergenic L1MA9|LINE|L1 461128 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 183.75-39 chr3 82775339 82775588 + 1.5 NA Intergenic L1MA4|LINE|L1 789321 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 148.5-81 chr5 80231103 80231322 + 1.5 NA intron (NR_126061, intron 1 of 13) intron (NR_126061, intron 1 of 13) 24836 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 237.75-14 chr13 63253295 63253550 + 1.5 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 74672 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 180-56 chr5 110502865 110503064 + 1.5 NA intron (NM_001039763, intron 12 of 13) L2a|LINE|L2 10951 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 186.5-3 chr1 172183329 172183511 + 1.5 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -38585 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 189-29 chr2 227036382 227036643 + 1.5 NA intron (NM_000092, intron 37 of 47) intron (NM_000092, intron 37 of 47) 128047 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 156.5-34 chr2 78104945 78105142 + 1.5 NA intron (NR_110287, intron 3 of 5) L1MB4|LINE|L1 16313 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 246.75-25 chr5 112979332 112979574 + 1.5 NA intron (NR_038352, intron 1 of 8) intron (NR_038352, intron 1 of 8) 2655 NM_001242377 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 118.25-20 chr12 52254888 52255039 + 1.5 NA intron (NR_146088, intron 3 of 8) intron (NR_146088, intron 3 of 8) 3545 NR_146088 85349 Hs.584773 NR_146088 ENSG00000135477 KRT87P HBD|KRT121P|KRTHBP4|psihHbD keratin 87 pseudogene pseudo 306.75-3 chr14 75332271 75332580 + 1.5 NA Intergenic L1MC5|LINE|L1 38021 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 250.25-4 chr13 72687194 72687602 + 1.5 NA Intergenic Intergenic 40231 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 221-32 chr4 98391659 98391891 + 1.5 NA intron (NM_021159, intron 5 of 14) intron (NM_021159, intron 5 of 14) 130391 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 300-13 chr2 57713287 57713661 + 1.5 NA Intergenic MamSINE1|SINE|tRNA-RTE -194177 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 237.25-10 chr12 25474018 25474258 + 1.5 NA Intergenic Intergenic 79145 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 196.5-11 chr1 202263470 202263652 + 1.5 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 49406 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 189.5 chr1 52499251 52499464 + 1.5 NA intron (NM_001009881, intron 4 of 29) AluSz|SINE|Alu 53733 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 329-4 chr17 59033056 59033288 + 1.5 NA intron (NR_148346, intron 17 of 23) intron (NR_148346, intron 17 of 23) 73708 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 343.5 chr1 208790039 208790340 + 1.5 NA Intergenic L1ME4a|LINE|L1 61501 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 352-5 chr4 93054832 93055111 + 1.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 750572 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 131-22 chr15 79660110 79660244 + 1.5 NA Intergenic Intergenic 227661 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 139.75-75 chr8 136565104 136565330 + 1.5 NA intron (NR_147196, intron 2 of 5) L1PA16|LINE|L1 34419 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 313-6 chr16 65531837 65532235 + 1.5 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 44264 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 152-22 chr14 42681660 42681832 + 1.5 NA Intergenic Intergenic 1074890 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 238-13 chr14 27639558 27639825 + 1.5 NA TTS (NR_039992) TTS (NR_039992) -6413 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 212-5 chr10 59545015 59545173 + 1.5 NA Intergenic MER63D|DNA|hAT-Blackjack 164797 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 273.75-16 chr7 1027695 1027964 + 1.5 NA intron (NR_134538, intron 1 of 1) CpG 540 NR_156697 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 218.5-45 chr6 140403137 140403364 + 1.5 NA Intergenic Intergenic 197998 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 166-34 chr20 5399945 5400059 + 1.5 NA Intergenic L2c|LINE|L2 45746 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 158.5-89 chr6 71591790 71591920 + 1.5 NA Intergenic Intergenic 170828 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 213-32 chr3 124039304 124039647 + 1.5 NA Intergenic Intergenic -47305 NR_133919 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 118.5-107 chr7 93044636 93044732 + 1.5 NA Intergenic Intergenic 73295 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 149.5-114 chr9 116670839 116671028 + 1.5 NA intron (NM_014010, intron 15 of 21) intron (NM_014010, intron 15 of 21) 16282 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 304.25-13 chr4 113681264 113681720 + 1.5 NA intron (NM_001321585, intron 2 of 19) THE1C|LTR|ERVL-MaLR 80246 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 124.5-60 chr2 154823949 154824085 + 1.5 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 125322 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 460.5 chr9 26683905 26684305 + 1.5 NA Intergenic Intergenic 208697 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 237.25-13 chr16 7958265 7958606 + 1.5 NA Intergenic Intergenic 625590 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 204-25 chr2 212571726 212571922 + 1.5 NA Intergenic Intergenic -33022 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 196.75-13 chr16 58922520 58922712 + 1.5 NA Intergenic Intergenic -188300 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 152.25-69 chr8 120149123 120149353 + 1.5 NA intron (NM_021110, intron 2 of 47) intron (NM_021110, intron 2 of 47) 24136 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 237.75-10 chr11 79828859 79829109 + 1.5 NA Intergenic Intergenic -387954 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 226.5-53 chr8 126772135 126772296 + 1.5 NA Intergenic Intergenic -213737 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 171.25-38 chr4 32913476 32913630 + 1.5 NA Intergenic L1PA11|LINE|L1 562515 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 182.5-45 chr3 133387494 133387640 + 1.5 NA intron (NM_023943, intron 4 of 5) MIR1_Amn|SINE|MIR -12489 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 213-41 chr7 41382083 41382320 + 1.5 NA Intergenic Intergenic 280597 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 127-40 chr18 31889663 31889774 + 1.5 NA intron (NM_014939, intron 12 of 28) intron (NM_014939, intron 12 of 28) 53410 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 145-27 chr16 76456919 76457104 + 1.5 NA intron (NM_001322187, intron 9 of 24) MIRb|SINE|MIR 147159 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 197-18 chr16 55101844 55102010 + 1.5 NA Intergenic MIR3|SINE|MIR 170728 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 168.75-2 chr1 179483723 179483892 + 1.5 NA intron (NR_073544, intron 17 of 25) intron (NR_073544, intron 17 of 25) 92141 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 191.5-46 chr4 59367434 59367672 + 1.5 NA Intergenic Intergenic 353980 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 256-26 chr7 3686390 3686672 + 1.5 NA intron (NM_152744, intron 4 of 44) L1MD1|LINE|L1 385279 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 207.5 chr1 49426523 49426783 + 1.5 NA intron (NR_046839, intron 2 of 3) MIRb|SINE|MIR 45432 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 342.5-3 chr11 122083453 122083699 + 1.5 NA intron (NR_137178, intron 1 of 4) intron (NR_137178, intron 1 of 4) 16268 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 125.5-41 chr14 52872956 52873051 + 1.5 NA intron (NM_006832, intron 9 of 14) intron (NM_006832, intron 9 of 14) 78047 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 179.25-20 chr2 66745714 66745840 + 1.5 NA Intergenic Intergenic -42550 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 141.5-22 chr12 25812793 25812927 + 1.5 NA Intergenic Intergenic 61219 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 222-27 chr3 113009377 113009693 + 1.5 NA intron (NR_134969, intron 4 of 5) intron (NR_134969, intron 4 of 5) 10136 NM_001319111 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 197.5-47 chr4 156861732 156862142 + 1.5 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 109862 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 284 chr1 58572426 58572666 + 1.5 NA Intergenic MIR3|SINE|MIR 4706 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 169.5-44 chr2 180609788 180609960 + 1.5 NA Intergenic MIRb|SINE|MIR -82230 NR_104323 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 266.75-2 chr11 100995828 100996147 + 1.5 NA Intergenic Intergenic 61713 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 224-15 chr2 107246762 107247048 + 1.5 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 102620 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 264.25-14 chr5 64928897 64929270 + 1.5 NA intron (NM_005869, intron 11 of 13) L1MC4|LINE|L1 160153 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 179.5-46 chr17 56677736 56677991 + 1.5 NA Intergenic Intergenic 84164 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 213.75-49 chr8 98232115 98232299 + 1.5 NA intron (NR_135745, intron 4 of 11) X6B_LINE|LINE|CR1 62028 NR_135746 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 381-4 chr2 229415382 229415772 + 1.5 NA intron (NM_139072, intron 9 of 12) L1MEj|LINE|L1 -144290 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 144.25-34 chr19 28073169 28073350 + 1.5 NA Intergenic L1M3|LINE|L1 -279319 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 192-52 chr8 130464715 130464889 + 1.5 NA Intergenic Intergenic -21128 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 250-5 chr11 81624596 81624772 + 1.5 NA Intergenic Intergenic 266152 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 142.75-30 chr15 60268543 60268741 + 1.5 NA Intergenic L1PBa|LINE|L1 129344 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 151-31 chr18 68307813 68307933 + 1.5 NA Intergenic Intergenic 407235 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 144.5-14 chr10 87670187 87670294 + 1.5 NA intron (NM_001015880, intron 1 of 12) intron (NM_001015880, intron 1 of 12) 10362 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 312.25-5 chr2 55869025 55869438 + 1.5 NA intron (NM_001039349, intron 10 of 10) intron (NM_001039349, intron 10 of 10) 54551 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 300-18 chr5 132849861 132850238 + 1.5 NA Intergenic HAL1|LINE|L1 15312 NM_005260 2661 Hs.25022 NM_005260 ENSG00000164404 GDF9 POF14 growth differentiation factor 9 protein-coding 204.25-38 chr4 48755650 48755881 + 1.5 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 24534 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 253.5-25 chr2 64803599 64803851 + 1.5 NA Intergenic Intergenic 59906 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 364.5-5 chr6 126860765 126861149 + 1.5 NA Intergenic Intergenic -257714 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 270.5-25 chr5 166928228 166928476 + 1.5 NA Intergenic L1MCb|LINE|L1 -1982 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 167.75-29 chr17 52926598 52926793 + 1.5 NA Intergenic Intergenic -58810 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 302.5-5 chr18 33435053 33435349 + 1.5 NA intron (NM_001308126, intron 2 of 23) intron (NM_001308126, intron 2 of 23) 5370 NM_001371121 298-3 chr10 14125076 14125374 + 1.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 50941 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 138.5-74 chr3 153215235 153215373 + 1.5 NA Intergenic Intergenic 53078 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 295.5-13 chr2 83120400 83120660 + 1.5 NA Intergenic Intergenic 263727 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 286.25-11 chr3 53955877 53956260 + 1.5 NA Intergenic MIRb|SINE|MIR -64209 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 186.75-41 chr4 89958928 89959099 + 1.5 NA Intergenic Intergenic 64159 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 185-12 chr14 32660347 32660491 + 1.5 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -278460 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 208-24 chr21 32003147 32003495 + 1.5 NA 3' UTR (NM_014586, exon 11 of 11) 3' UTR (NM_014586, exon 11 of 11) 82974 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 223-8 chr11 87395879 87396067 + 1.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger 323438 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 114.75-95 chr7 18161670 18161746 + 1.5 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) -34399 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 215.25-41 chr9 88756793 88757079 + 1.5 NA Intergenic L1MD2|LINE|L1 -11031 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 387.5-6 chr3 122509981 122510442 + 1.5 NA intron (NR_026698, intron 1 of 14) HAL1|LINE|L1 4728 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 156.5-25 chr16 13652417 13652547 + 1.5 NA Intergenic L1MC3|LINE|L1 -267675 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 207-5 chr1 244174564 244174751 + 1.5 NA Intergenic ORSL-2b|DNA|hAT-Tip100 121452 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 360.75-3 chr17 71446686 71447115 + 1.5 NA Intergenic Intergenic -244721 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 284.75-2 chr11 96842164 96842430 + 1.5 NA Intergenic Intergenic 333872 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 257-15 chr5 175064453 175064861 + 1.5 NA Intergenic MER6B|DNA|TcMar-Tigger -68926 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 312.5-8 chr2 216464097 216464457 + 1.5 NA intron (NM_001127207, intron 12 of 17) intron (NM_001127207, intron 12 of 17) -34567 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 173.5-85 chr5 86896107 86896435 + 1.5 NA Intergenic Intergenic 149453 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 139.5-112 chr9 37359080 37359189 + 1.5 NA TTS (NM_032226) TTS (NM_032226) -63562 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 251.75-14 chr6 52654369 52654810 + 1.5 NA Intergenic L1MD1|LINE|L1 -9812 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 185.5-23 chr12 7401275 7401409 + 1.5 NA intron (NM_001297650, intron 6 of 19) intron (NM_001297650, intron 6 of 19) 42843 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 155.25-20 chr14 58149079 58149263 + 1.5 NA intron (NM_001320173, intron 1 of 4) intron (NM_001320173, intron 1 of 4) 3042 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 120.75-57 chr20 44827231 44827311 + 1.5 NA Intergenic L1ME3G|LINE|L1 -16725 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 144-53 chr4 96701133 96701266 + 1.5 NA intron (NR_147149, intron 3 of 3) MER57C2|LTR|ERV1 390496 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 223.5-34 chr2 64941733 64941904 + 1.5 NA Intergenic L2c|LINE|L2 -9371 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 227-34 chr8 78333326 78333497 + 1.5 NA Intergenic Intergenic -182929 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 214-35 chr5 77661039 77661294 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -22469 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 217-15 chr20 23009633 23009815 + 1.5 NA Intergenic Intergenic -25696 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 162.5-83 chr7 79866365 79866476 + 1.5 NA Intergenic Intergenic -268411 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 309.25-12 chr6 63682751 63683199 + 1.5 NA intron (NM_001370350, intron 3 of 14) intron (NM_001370350, intron 3 of 14) 36449 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 311.25-7 chr4 45467413 45467858 + 1.5 NA Intergenic L2a|LINE|L2 656419 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 337-5 chr17 15063578 15063969 + 1.5 NA Intergenic MIR|SINE|MIR 32798 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 358.25-4 chr16 82127283 82127761 + 1.5 NA Intergenic MER65-int|LTR|ERV1 42702 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 450.75-5 chr6 57145502 57145907 + 1.5 NA intron (NM_015555, intron 9 of 13) L1PB4|LINE|L1 26509 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 173-56 chr9 74649200 74649315 + 1.5 NA intron (NM_006914, intron 4 of 9) intron (NM_006914, intron 4 of 9) 33723 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 189.5-56 chr6 72220599 72220804 + 1.5 NA intron (NM_001350474, intron 1 of 21) intron (NM_001350474, intron 1 of 21) 3760 NM_001350471 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 381.75 chr2 81750505 81750897 + 1.5 NA Intergenic FLAM_C|SINE|Alu -283755 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 166.5-54 chr2 23027841 23028014 + 1.5 NA Intergenic Intergenic -357252 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 239.25 chr1 20776352 20776602 + 1.5 NA intron (NM_016287, intron 4 of 12) intron (NM_016287, intron 4 of 12) 10211 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 187-7 chr14 55432369 55432573 + 1.5 NA intron (NM_199047, intron 4 of 6) intron (NM_199047, intron 4 of 6) 8074 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 133-40 chr2 117396063 117396214 + 1.5 NA Intergenic Intergenic -418553 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 374.5-4 chr4 59150729 59151157 + 1.5 NA Intergenic Intergenic 137370 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 259.5-17 chr2 175432747 175433089 + 1.5 NA Intergenic Intergenic -251208 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 136.75-28 chr14 31684567 31684678 + 1.5 NA intron (NR_120408, intron 6 of 9) intron (NR_120408, intron 6 of 9) -29947 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 238.25-27 chr8 21240215 21240510 + 1.5 NA Intergenic L1MA4|LINE|L1 -57877 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 277.5-8 chr17 51067134 51067398 + 1.5 NA intron (NM_001130527, intron 2 of 29) intron (NM_001130527, intron 2 of 29) -20388 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 295-3 chr17 63278696 63279109 + 1.5 NA intron (NM_025185, intron 8 of 25) L1MB1|LINE|L1 161365 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 231.5-45 chr8 37277972 37278172 + 1.5 NA Intergenic Zaphod|DNA|hAT-Tip100 215841 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 154-47 chr4 32918123 32918261 + 1.5 NA Intergenic Intergenic 567154 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 199-41 chr6 109380853 109381003 + 1.5 NA intron (NM_006016, intron 1 of 5) intron (NM_006016, intron 1 of 5) 811 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 219.5-49 chr8 56130406 56130682 + 1.5 NA Intergenic L1MEc|LINE|L1 -16562 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 152.5-95 chr7 16182018 16182195 + 1.5 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -28380 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 128.75-28 chr15 66538257 66538538 + 1.5 NA intron (NM_001287823, intron 15 of 17) AluSq4|SINE|Alu 27100 NM_207338 197021 Hs.680983 NM_207338 ENSG00000188501 LCTL KLG|KLPH lactase like protein-coding 132.25-41 chr19 49853517 49853610 + 1.5 NA intron (NM_001305105, intron 1 of 12) AluSz|SINE|Alu -1028 NR_039904 100616313 NR_039904 ENSG00000265954 MIR4749 mir-4749 microRNA 4749 ncRNA 213-33 chr4 62379418 62379618 + 1.5 NA Intergenic Intergenic -217753 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 232.5-27 chr3 106125359 106125634 + 1.5 NA Intergenic Intergenic -256095 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 225-5 chr10 55912332 55912569 + 1.5 NA Intergenic Intergenic -284508 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 285.75-2 chr1 107720785 107721104 + 1.5 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -32445 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 204-2 chr1 95979016 95979210 + 1.5 NA Intergenic L1ME1|LINE|L1 -12955 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 331.5-3 chr14 42673892 42674206 + 1.5 NA Intergenic L1MC|LINE|L1 1067193 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 165.75-32 chr2 25210826 25210999 + 1.5 NA Intergenic LTR13A|LTR|ERVK 6599 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 217-5 chr11 25152407 25152652 + 1.5 NA Intergenic Intergenic 655476 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 142.5-102 chr9 35691588 35691704 + 1.5 NA Intergenic Intergenic -1590 NM_003289 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB tropomyosin 2 protein-coding 261.5-32 chr8 125851851 125852043 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR 99250 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 187.5-47 chr20 12508347 12508551 + 1.5 NA Intergenic Intergenic 428514 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 211.75-31 chr5 126062034 126062398 + 1.5 NA Intergenic Intergenic -117361 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 224-14 chr2 83271089 83271242 + 1.5 NA Intergenic L1MA8|LINE|L1 -251649 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 263.75-17 chr8 14788610 14788889 + 1.5 NA intron (NM_139167, intron 1 of 7) Tigger17a|DNA|TcMar-Tigger 64761 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 289.5-24 chr9 78394300 78394570 + 1.5 NA Intergenic MER49|LTR|ERV1 97310 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 191.5-54 chr5 68929417 68929677 + 1.5 NA Intergenic L1ME4b|LINE|L1 100380 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 306.25-7 chr15 88173959 88174289 + 1.5 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 31850 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 316.75-8 chr6 98288036 98288272 + 1.5 NA Intergenic MER57F|LTR|ERV1 263623 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 291-2 chr1 93259620 93259924 + 1.5 NA intron (NM_001306076, intron 26 of 28) intron (NM_001306076, intron 26 of 28) 79056 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 295.25-3 chr11 78540870 78541205 + 1.5 NA intron (NR_120566, intron 1 of 3) AluSq2|SINE|Alu 7861 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 196.5-52 chr4 107663754 107663930 + 1.5 NA intron (NM_005443, intron 5 of 11) MIR|SINE|MIR 56392 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 181-19 chr12 38737367 38737591 + 1.5 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 168112 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 261-28 chr21 8234248 8234608 + 1.5 NA intron (NR_003287, intron 1 of 2) (TCTC)n|Simple_repeat|Simple_repeat -15077 NR_128717 103504733 NR_128717 ENSG00000275692 MIR6724-4 hsa-mir-6724-4 microRNA 6724-4 ncRNA 166.5-38 chr15 70922862 70922994 + 1.5 NA intron (NM_017691, intron 7 of 15) intron (NM_017691, intron 7 of 15) 30485 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 208-20 chr20 11625512 11625716 + 1.5 NA Intergenic Intergenic 245101 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 198-25 chr2 98406337 98406470 + 1.5 NA Intergenic L1M1|LINE|L1 -38184 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 249.25-28 chrX 28717880 28718162 + 1.5 NA intron (NM_014271, intron 1 of 10) Charlie14a|DNA|hAT-Charlie 130575 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 171-23 chr14 64436594 64436742 + 1.5 NA intron (NM_005956, intron 16 of 27) intron (NM_005956, intron 16 of 27) -28831 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 458.25-2 chr6 23458092 23458658 + 1.5 NA Intergenic Intergenic -667840 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 160-20 chr2 124979797 124979933 + 1.5 NA Intergenic Intergenic 954578 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 236.75-6 chr13 82254591 82254769 + 1.5 NA Intergenic Intergenic -1027697 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 153-3 chr1 203687517 203687643 + 1.5 NA intron (NM_001001396, intron 2 of 21) intron (NM_001001396, intron 2 of 21) -42001 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 186.5-58 chr8 126772674 126772902 + 1.5 NA Intergenic Intergenic -214310 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 251.5 chr1 197198932 197199277 + 1.5 NA intron (NM_194314, intron 1 of 9) intron (NM_194314, intron 1 of 9) 1438 NR_135153 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 207.5-3 chr1 107541768 107542070 + 1.5 NA Intergenic Intergenic 146580 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 185.5-2 chr1 81243485 81243689 + 1.5 NA Intergenic Intergenic -62605 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 287.25-14 chr4 2959876 2960108 + 1.5 NA intron (NM_001291979, intron 1 of 16) AluSx|SINE|Alu 3414 NM_001291979 8602 Hs.627133 NM_003703 ENSG00000087269 NOP14 C4orf9|NOL14|RES4-25|RES425|UTP2 NOP14 nucleolar protein protein-coding 275.5-8 chr12 2046815 2047186 + 1.5 NA Intergenic Intergenic -1352 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 195.75-14 chr14 69944188 69944370 + 1.5 NA intron (NM_001034852, intron 1 of 11) L2c|LINE|L2 -33854 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 188.5-60 chrX 85058782 85058992 + 1.5 NA intron (NM_198450, intron 5 of 8) L1PA4|LINE|L1 50081 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 187.5-68 chr6 54569622 54569789 + 1.5 NA Intergenic L1MCb|LINE|L1 261264 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 332.5-7 chr16 14260626 14260944 + 1.5 NA intron (NM_001308142, intron 16 of 16) intron (NM_001308142, intron 16 of 16) -41503 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 230-10 chr2 5414318 5414676 + 1.5 NA Intergenic Intergenic 276621 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 373.75-6 chr8 59367012 59367515 + 1.5 NA Intergenic Intergenic 248053 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 235.5-50 chr7 38301039 38301340 + 1.5 NA Intergenic AluJb|SINE|Alu -27542 NM_001003806 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 165.5-87 chr7 121220773 121220893 + 1.5 NA intron (NM_001105533, intron 15 of 17) L1ME4b|LINE|L1 -104534 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 214-29 chr3 99576824 99576983 + 1.5 NA Intergenic Intergenic -61691 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 186.5-43 chr4 24534561 24534756 + 1.5 NA intron (NM_001358, intron 11 of 13) intron (NM_001358, intron 11 of 13) -14368 NR_030299 693158 NR_030299 ENSG00000207697 MIR573 MIRN573|hsa-mir-573|mir-573 microRNA 573 ncRNA 320-11 chr7 49265832 49266194 + 1.5 NA Intergenic Intergenic 341466 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 165.5-4 chr1 168972103 168972345 + 1.5 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 114781 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 252-24 chr5 101273241 101273561 + 1.5 NA Intergenic L1MEc|LINE|L1 -370119 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 305.75-10 chr3 193310114 193310370 + 1.5 NA intron (NR_046758, intron 1 of 1) L1PA14|LINE|L1 2998 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 183-51 chr4 103262378 103262598 + 1.5 NA Intergenic Intergenic -64145 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 260-21 chr3 4325649 4325898 + 1.5 NA Intergenic LTR49-int|LTR|ERV1 22469 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 182-34 chr3 136605268 136605483 + 1.5 NA intron (NM_005862, intron 3 of 33) L2|LINE|L2 147003 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 411.75-5 chr2 67978947 67979424 + 1.5 NA Intergenic Intergenic 83819 NM_001190263 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 205.75-26 chr20 4539798 4540023 + 1.5 NA Intergenic Intergenic -146546 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 282.5 chr1 56121907 56122220 + 1.5 NA Intergenic L1PA13|LINE|L1 176976 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 178-47 chr7 4840257 4840453 + 1.5 NA intron (NM_018059, intron 2 of 14) intron (NM_018059, intron 2 of 14) -2905 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 240-3 chr1 200832050 200832241 + 1.5 NA intron (NM_001297707, intron 5 of 17) intron (NM_001297707, intron 5 of 17) -40836 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 115.75-19 chr13 34388276 34388387 + 1.5 NA intron (NR_146542, intron 1 of 3) LTR33|LTR|ERVL 40288 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 186-9 chr11 20805728 20805993 + 1.5 NA intron (NM_001288714, intron 3 of 18) L1M1|LINE|L1 136274 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 226-9 chr12 22212334 22212589 + 1.5 NA intron (NM_003034, intron 4 of 4) intron (NM_003034, intron 4 of 4) 122253 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 285.25-18 chr5 19395132 19395834 + 1.5 NA Intergenic Intergenic 490789 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 207.75-45 chr9 106768005 106768179 + 1.5 NA Intergenic Intergenic -95074 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 146-39 chr4 63426831 63427048 + 1.5 NA Intergenic Intergenic 982511 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 250-8 chr14 73664505 73664685 + 1.5 NA intron (NM_001201366, intron 5 of 8) AluJo|SINE|Alu 19609 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 224-4 chr11 46095300 46095465 + 1.5 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 25437 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 181.25-25 chr19 31793435 31793614 + 1.5 NA Intergenic Intergenic 201243 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 215-46 chr9 102489636 102489817 + 1.5 NA Intergenic Intergenic -29911 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 262.5-33 chr5 66800952 66801253 + 1.5 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -27671 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 332.5-9 chr3 95799249 95799565 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -116214 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 203-8 chr12 130803114 130803417 + 1.5 NA intron (NM_001351051, intron 7 of 10) AluJr|SINE|Alu 35985 NM_001351052 2054 Hs.437585 NM_001980 ENSG00000111450 STX2 EPIM|EPM|STX2A|STX2B|STX2C syntaxin 2 protein-coding 224.5-32 chr5 107793034 107793199 + 1.5 NA Intergenic Intergenic -122179 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 181.25-11 chr12 52489145 52489265 + 1.5 NA intron (NM_005554, intron 6 of 8) MER30|DNA|hAT-Charlie 4052 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 266.75 chr1 158370102 158370470 + 1.5 NA Intergenic Intergenic 16392 NM_001185115 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 306.75-4 chr17 72647223 72647512 + 1.5 NA 3' UTR (NM_001159770, exon 10 of 10) 3' UTR (NM_001159770, exon 10 of 10) -6895 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 165.5-51 chr2 240286901 240287054 + 1.5 NA Intergenic Intergenic -146319 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 180.5-95 chr9 80486537 80486693 + 1.5 NA Intergenic Intergenic 511592 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 230.5-35 chr3 177152999 177153317 + 1.5 NA intron (NM_001321194, intron 1 of 16) AluSz|SINE|Alu 43320 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 316-12 chr22 19420543 19420793 + 1.5 NA intron (NM_003325, intron 1 of 24) AluJo|SINE|Alu 11065 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 259.5-18 chr20 1967180 1967486 + 1.5 NA intron (NR_134520, intron 3 of 3) MamRep1151|LTR?|LTR? 20123 NR_134520 727993 Hs.551466 NR_134520 ENSG00000233896 PDYN-AS1 - PDYN antisense RNA 1 ncRNA 201.75 chr1 70279785 70279992 + 1.5 NA intron (NM_030816, intron 9 of 12) MER34B|LTR|ERV1 58508 NR_146810 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 145.5-36 chr18 2212657 2212808 + 1.5 NA Intergenic L1MEf|LINE|L1 358773 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 446.5 chr2 51041395 51041723 + 1.5 NA intron (NR_135237, intron 1 of 10) intron (NR_135237, intron 1 of 10) 8958 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 200.5-25 chr17 53269441 53269603 + 1.5 NA Intergenic Intergenic 284017 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 200-29 chr3 21530374 21530551 + 1.5 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -12327 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 218-48 chr9 100170768 100170990 + 1.5 NA intron (NR_134606, intron 3 of 16) L2c|LINE|L2 71636 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 274.5-4 chr11 91822187 91822580 + 1.5 NA Intergenic Intergenic -402651 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 124.25-58 chr21 17505002 17505156 + 1.5 NA Intergenic L1MEd|LINE|L1 -7827 NM_001207066 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 410-3 chr14 71340595 71341014 + 1.5 NA intron (NM_001354285, intron 2 of 24) AluSx3|SINE|Alu 20328 NM_015556 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 262.75-4 chr10 51613448 51613749 + 1.5 NA intron (NM_001098512, intron 3 of 17) L1MA4A|LINE|L1 85997 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 278-14 chr2 73980907 73981157 + 1.5 NA intron (NR_104030, intron 1 of 1) intron (NR_104030, intron 1 of 1) 407 NR_104029 100874048 Hs.600674 NR_104029 ENSG00000237883 DGUOK-AS1 - DGUOK antisense RNA 1 ncRNA 266.25-24 chr8 140042608 140042956 + 1.5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 57753 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 174-57 chrX 79847771 79847926 + 1.5 NA Intergenic L1MA4|LINE|L1 -166905 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 150.5-97 chrX 85679686 85679868 + 1.5 NA Intergenic L1MA4A|LINE|L1 -156003 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 193-41 chr4 57479963 57480133 + 1.5 NA Intergenic L2b|LINE|L2 54176 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 272 chr1 85095645 85095880 + 1.5 NA intron (NM_001288563, intron 9 of 21) intron (NM_001288563, intron 9 of 21) 33435 NM_145172 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 161.5-84 chr8 102275390 102275566 + 1.5 NA intron (NM_001282873, intron 47 of 58) L1ME3E|LINE|L1 36027 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 268.75-12 chr17 60166801 60166990 + 1.5 NA intron (NR_137422, intron 8 of 11) AluSx|SINE|Alu 16922 NR_137422 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 164-58 chr7 83448677 83448889 + 1.5 NA intron (NM_001178129, intron 4 of 16) intron (NM_001178129, intron 4 of 16) 192648 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 201.75-35 chr7 3306077 3306236 + 1.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 4904 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 221.75-26 chr7 91606271 91606512 + 1.5 NA Intergenic Intergenic 274311 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 120.5-22 chr12 13231575 13231683 + 1.5 NA Intergenic MIRb|SINE|MIR 34903 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 182.5-13 chr11 131824669 131824804 + 1.5 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -85188 NR_147850 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 173-18 chr14 70382769 70382914 + 1.5 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -23158 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 250.5-36 chr8 136446750 136446953 + 1.5 NA Intergenic L2c|LINE|L2 -83947 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 296.5-12 chr17 12520966 12521229 + 1.5 NA Intergenic Intergenic -28871 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 223.75-9 chr16 89748981 89749203 + 1.5 NA intron (NM_000135, intron 32 of 42) intron (NM_000135, intron 32 of 42) 27555 NM_001113525 92822 Hs.290154 NM_152287 ENSG00000158805 ZNF276 CENP-Z|CENPZ|ZADT|ZFP276|ZNF477 zinc finger protein 276 protein-coding 246-27 chr6 138623607 138623915 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -51192 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 194-42 chr8 120331633 120331870 + 1.5 NA intron (NM_021110, intron 40 of 47) intron (NM_021110, intron 40 of 47) 113399 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 323-17 chr7 43080861 43081182 + 1.5 NA Intergenic Intergenic -31626 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 195-26 chr19 53534588 53534779 + 1.5 NA intron (NM_018555, intron 2 of 6) MLT1D|LTR|ERVL-MaLR -2624 NM_001317114 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 166.75-30 chr2 54893776 54893950 + 1.5 NA intron (NM_001039753, intron 18 of 40) (GTTTT)n|Simple_repeat|Simple_repeat 116409 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 168-61 chr7 48499975 48500173 + 1.5 NA intron (NM_152701, intron 48 of 61) MIR3|SINE|MIR 328616 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 118-58 chr5 115577850 115577974 + 1.5 NA TTS (NM_001164468) TTS (NM_001164468) -24243 NR_109875 101927100 Hs.745340 NR_109874 LOC101927100 - uncharacterized LOC101927100 ncRNA 283-12 chr5 18349734 18350259 + 1.5 NA Intergenic L1MCa|LINE|L1 542722 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 151-53 chr5 33472345 33472513 + 1.5 NA Intergenic HAL1|LINE|L1 31653 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 203.5-24 chr2 152828811 152829057 + 1.5 NA Intergenic Intergenic 110297 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 233.5-19 chr15 63972772 63973234 + 1.5 NA intron (NM_014326, intron 3 of 11) MLT1A0-int|LTR|ERVL-MaLR 44729 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 150-7 chr1 117944442 117944635 + 1.5 NA intron (NM_006784, intron 11 of 26) L2a|LINE|L2 14799 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 299-16 chr6 55977796 55978126 + 1.5 NA Intergenic Intergenic -102371 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 199.25-40 chr8 137472017 137472276 + 1.5 NA Intergenic Intergenic -58558 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 234-5 chr10 22196395 22196698 + 1.5 NA Intergenic L1MCa|LINE|L1 13437 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 197-31 chr2 218201990 218202253 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -15068 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 224.25-23 chr20 52510372 52510558 + 1.5 NA Intergenic LTR16C|LTR|ERVL -110373 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 181.5-31 chr18 67788541 67788757 + 1.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 26173 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 332.5-2 chr10 103185129 103185553 + 1.5 NA intron (NM_001351187, intron 1 of 21) intron (NM_001351187, intron 1 of 21) 7965 NM_001351178 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 160.25-27 chr18 2188529 2188744 + 1.5 NA Intergenic Intergenic 382869 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 291-3 chr10 28017990 28018297 + 1.5 NA Intergenic Intergenic -19064 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 298.5 chr1 40978994 40979375 + 1.5 NA promoter-TSS (NM_001905) promoter-TSS (NM_001905) -512 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 241.5-32 chr5 152444045 152444266 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -38876 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 211.75-34 chr6 98884649 98884994 + 1.5 NA intron (NR_103836, intron 5 of 7) L1MEi|LINE|L1 50247 NM_005604 5454 Hs.182505 NM_005604 ENSG00000184486 POU3F2 BRN2|N-Oct3|OCT7|OTF-7|OTF7|POUF3|brn-2|oct-7 POU class 3 homeobox 2 protein-coding 263.25 chr1 50391159 50391449 + 1.5 NA Intergenic L1MEd|LINE|L1 32139 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 264.75-12 chr2 201443718 201443958 + 1.5 NA intron (NM_015049, intron 1 of 15) L2b|LINE|L2 7620 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 152-70 chr9 32972110 32972325 + 1.5 NA TTS (NM_175069) TTS (NM_175069) 29359 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 246.25-23 chr5 45439036 45439339 + 1.5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 257193 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 326-4 chr10 86536902 86537159 + 1.5 NA Intergenic Intergenic -15238 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 237.75-43 chr6 154210078 154210403 + 1.5 NA intron (NM_015553, intron 9 of 11) intron (NM_015553, intron 9 of 11) 119841 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 175-9 chr11 103037201 103037357 + 1.5 NA Intergenic L3|LINE|CR1 54881 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 187.5-4 chr1 111197933 111198088 + 1.5 NA intron (NM_001271833, intron 3 of 11) intron (NM_001271833, intron 3 of 11) 2636 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 156-55 chr5 119614254 119614415 + 1.5 NA Intergenic Intergenic -15224 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 150.5-73 chr5 79018852 79019048 + 1.5 NA intron (NM_013391, intron 14 of 15) (CTTCT)n|Simple_repeat|Simple_repeat -32992 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 236.75-16 chr20 63042266 63042578 + 1.5 NA intron (NR_033369, intron 1 of 5) L1MB4|LINE|L1 4411 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 323.5-6 chr14 31020785 31021078 + 1.5 NA intron (NM_001083893, intron 1 of 17) L2b|LINE|L2 -4175 NM_001254729 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 182.75-64 chrX 95826192 95826452 + 1.5 NA Intergenic Intergenic 511580 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 231.25-25 chr3 33302316 33302596 + 1.5 NA intron (NR_146133, intron 3 of 15) intron (NR_146133, intron 3 of 15) 25014 NM_001349322 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 282.75-4 chr10 85564490 85564837 + 1.5 NA Intergenic L1ME3A|LINE|L1 -13068 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 141.75-24 chr14 68778715 68778848 + 1.5 NA Intergenic Intergenic 15133 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 201.5-31 chr2 81505756 81505995 + 1.5 NA Intergenic Intergenic -38929 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 133.5-63 chr3 35556377 35556516 + 1.5 NA Intergenic Intergenic -83079 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 180.5-72 chr5 109842267 109842507 + 1.5 NA exon (NM_002372, exon 17 of 22) exon (NM_002372, exon 17 of 22) -40795 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 226-8 chr11 116623763 116623915 + 1.5 NA Intergenic L1MDa|LINE|L1 -15583 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 126.5-61 chr20 13029306 13029465 + 1.5 NA intron (NM_001349945, intron 2 of 12) intron (NM_001349945, intron 2 of 12) 20413 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 317-10 chr6 43628040 43628385 + 1.5 NA promoter-TSS (NM_001286216) promoter-TSS (NM_001286216) -859 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 140.25-67 chr5 79472761 79472894 + 1.5 NA intron (NM_001277078, intron 1 of 5) intron (NM_001277078, intron 1 of 5) 41009 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 331 chr1 174657257 174657548 + 1.5 NA intron (NM_001366446, intron 14 of 25) L1MA5A|LINE|L1 -43137 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 263-23 chr6 65077122 65077341 + 1.5 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -224187 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 246.75-17 chr20 24197487 24197808 + 1.5 NA Intergenic Intergenic -2120 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 204.25-50 chr7 81966261 81966504 + 1.5 NA intron (NM_000722, intron 31 of 38) intron (NM_000722, intron 31 of 38) -42795 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 160.25-54 chr8 73739119 73739425 + 1.5 NA intron (NM_001164384, intron 1 of 10) intron (NM_001164384, intron 1 of 10) 7568 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 140.5-101 chr6 119070726 119070871 + 1.5 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) -1655 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 143.5-97 chr8 20502568 20502734 + 1.5 NA Intergenic Intergenic 112275 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 150-55 chr4 33008599 33008738 + 1.5 NA Intergenic L1MC4|LINE|L1 657630 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 235.5-8 chr1 230788294 230788560 + 1.5 NA intron (NM_016452, intron 12 of 18) intron (NM_016452, intron 12 of 18) 41039 NM_006615 10753 Hs.498021 NM_006615 ENSG00000135773 CAPN9 GC36|nCL-4 calpain 9 protein-coding 128.5-51 chr21 20496511 20496646 + 1.5 NA Intergenic Intergenic -237893 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 301-23 chr8 109097238 109097474 + 1.5 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 10728 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 168.5-3 chr1 172398911 172399053 + 1.5 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -21703 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 167.5-20 chr14 50971005 50971185 + 1.5 NA Intergenic Intergenic -26612 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 224.5-4 chr1 108500681 108500894 + 1.5 NA Intergenic Intergenic 50505 NM_001143988 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 200.25-50 chr8 133689872 133690086 + 1.5 NA Intergenic Intergenic -5913 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 158.25-4 chr1 115201595 115201770 + 1.5 NA Intergenic L1PB3|LINE|L1 -81352 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 190.5-28 chr16 17830554 17830718 + 1.5 NA Intergenic Intergenic -359676 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 242-10 chr12 131324179 131324348 + 1.5 NA Intergenic MER4-int|LTR|ERV1 -23207 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 181.5-11 chr11 121724377 121724625 + 1.5 NA Intergenic Intergenic 272187 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 147.5-72 chr6 64293686 64293865 + 1.5 NA intron (NM_001292009, intron 30 of 43) L1ME3D|LINE|L1 486939 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 234.75-31 chr4 66497820 66498016 + 1.5 NA Intergenic Intergenic 221094 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 172.5-74 chr6 136324309 136324517 + 1.5 NA Intergenic AluJb|SINE|Alu -34562 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 265.5-15 chr19 39284434 39284756 + 1.5 NA Intergenic L1MD2|LINE|L1 -11812 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 335.5-8 chr2 223624103 223624383 + 1.5 NA Intergenic L1M5|LINE|L1 -21882 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 199.5-39 chr4 116002720 116002856 + 1.5 NA Intergenic Intergenic -296937 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 263.25-10 chr4 47783929 47784105 + 1.5 NA intron (NM_001278585, intron 2 of 19) MIRc|SINE|MIR -47328 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 315.75-4 chr19 45950466 45950881 + 1.5 NA intron (NM_002516, intron 3 of 3) intron (NM_002516, intron 3 of 3) 23192 NM_002516 4858 Hs.375439 NM_002516 ENSG00000104967 NOVA2 ANOVA|NOVA3 NOVA alternative splicing regulator 2 protein-coding 162-23 chr2 52032352 52032489 + 1.5 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -338228 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 177-8 chr11 77237828 77238018 + 1.5 NA intron (NM_182833, intron 13 of 16) AluSz6|SINE|Alu 63743 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 130.5-84 chr7 15181312 15181450 + 1.5 NA Intergenic Intergenic -206523 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 759.5 chr15 101336387 101337463 + 1.5 NA non-coding (NR_132373, exon 2 of 3) non-coding (NR_132373, exon 2 of 3) 2488 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 187.5-65 chr6 13913289 13913513 + 1.5 NA Intergenic Intergenic -11045 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 167.5-13 chr10 113661631 113661833 + 1.5 NA intron (NM_001322945, intron 3 of 40) intron (NM_001322945, intron 3 of 40) 2309 NM_198060 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 155-48 chr6 34005643 34005785 + 1.5 NA Intergenic Intergenic -5663 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 232.5-9 chr11 11495884 11496157 + 1.5 NA intron (NM_001363464, intron 1 of 9) MIRb|SINE|MIR 125985 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 188.75-25 chr3 4050435 4050688 + 1.5 NA Intergenic AluSz6|SINE|Alu -249686 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 178.5-14 chr14 50793265 50793460 + 1.5 NA intron (NM_016350, intron 4 of 28) intron (NM_016350, intron 4 of 28) -28435 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 135-68 chr7 3897193 3897321 + 1.5 NA intron (NM_152744, intron 5 of 44) L1MB3|LINE|L1 -232428 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 250.5-34 chr8 89335271 89335617 + 1.5 NA Intergenic L1MA2|LINE|L1 422267 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 151.5-73 chr6 24641528 24641702 + 1.5 NA intron (NM_001350409, intron 1 of 21) intron (NM_001350409, intron 1 of 21) 4406 NM_001168376 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 212.25-41 chr8 92195618 92195932 + 1.5 NA Intergenic Intergenic -92390 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 143.75-9 chr10 51218613 51218792 + 1.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -80871 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 157.75-37 chr19 53001756 53001921 + 1.5 NA Intergenic MER92B|LTR|ERV1 -8307 NR_003578 79986 Hs.714428 NM_024924 ENSG00000242779 ZNF702P ZNF702 zinc finger protein 702, pseudogene pseudo 253.25-24 chr5 8767881 8768234 + 1.5 NA Intergenic Intergenic -71675 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 144.5-99 chr6 129577683 129577790 + 1.5 NA 3' UTR (NM_033515, exon 15 of 15) 3' UTR (NM_033515, exon 15 of 15) 132441 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 154.75-20 chr15 93317908 93318076 + 1.5 NA Intergenic Intergenic 111926 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 199.5-26 chr2 78811257 78811503 + 1.5 NA Intergenic L1M6|LINE|L1 -214322 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 345-12 chr5 28155914 28156169 + 1.5 NA Intergenic Intergenic 131624 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 154.75-52 chr5 36808028 36808181 + 1.5 NA Intergenic Intergenic 68590 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 168-46 chr21 20331836 20332106 + 1.5 NA Intergenic Intergenic -73286 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 162.5-69 chr5 71699529 71699745 + 1.5 NA Intergenic Intergenic -19638 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 173.5-4 chr1 165003291 165003495 + 1.5 NA Intergenic L1M4|LINE|L1 -228752 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 305.5-5 chr14 75734967 75735187 + 1.5 NA intron (NM_015072, intron 14 of 31) intron (NM_015072, intron 14 of 31) 73831 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 342-8 chr6 36621535 36621954 + 1.5 NA TTS (NR_037491) TTS (NR_037491) 768 NR_037491 100500885 NR_037491 ENSG00000263894 MIR3925 - microRNA 3925 ncRNA 223.5-4 chr1 39898126 39898403 + 1.5 NA intron (NM_001033082, intron 2 of 2) intron (NM_001033082, intron 2 of 2) 3653 NM_001033082 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 188.75-49 chr7 85295604 85295857 + 1.5 NA Intergenic Intergenic -125392 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 167-44 chr3 38020123 38020269 + 1.5 NA non-coding (NR_024071, exon 2 of 14) non-coding (NR_024071, exon 2 of 14) 4324 NM_001130964 5333 Hs.80776 NM_006225 ENSG00000187091 PLCD1 NDNC3|PLC-III phospholipase C delta 1 protein-coding 262.5-27 chr3 186170538 186170780 + 1.5 NA intron (NM_001346, intron 22 of 24) MIRb|SINE|MIR -61570 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 116.5-25 chr12 61491836 61491935 + 1.5 NA Intergenic Intergenic 700954 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 296-12 chr2 232168272 232168694 + 1.5 NA intron (NR_046477, intron 8 of 18) Charlie7|DNA|hAT-Charlie -4170 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 296-8 chr15 39206757 39207143 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -43719 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 199-30 chr3 76898577 76898790 + 1.5 NA Intergenic Intergenic -141416 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 125-96 chr9 78693766 78693882 + 1.5 NA Intergenic Intergenic 396699 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 360.75-10 chr8 121990487 121990868 + 1.5 NA Intergenic L1MC1|LINE|L1 -349237 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 196.5-3 chr1 16310917 16311094 + 1.5 NA intron (NM_018994, intron 2 of 9) L1MC1|LINE|L1 41475 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 123.5-9 chr10 64816397 64816555 + 1.5 NA Intergenic Intergenic -9052 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 146.75-62 chr8 62765341 62765543 + 1.5 NA intron (NM_001304533, intron 4 of 6) Tigger19b|DNA|TcMar-Tigger -212419 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 212-18 chr17 51627469 51627656 + 1.5 NA Intergenic MIRb|SINE|MIR 192135 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 144.75-78 chr7 42753456 42753583 + 1.5 NA Intergenic Intergenic -47072 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 272.5-17 chr5 37437495 37437886 + 1.5 NA intron (NM_001345998, intron 5 of 17) intron (NM_001345998, intron 5 of 17) 58372 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 179.5-97 chr8 122565527 122565733 + 1.5 NA intron (NR_131202, intron 2 of 3) MamRep137|DNA|TcMar-Tigger 3014 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 225.5-4 chr1 116280065 116280289 + 1.5 NA Intergenic L1ME3G|LINE|L1 -93067 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 185-34 chr5 3177358 3177605 + 1.5 NA promoter-TSS (NR_104617) promoter-TSS (NR_104617) -354 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 140.75-18 chr14 67860559 67860811 + 1.5 NA intron (NM_133509, intron 4 of 10) L1ME2z|LINE|L1 37093 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 254.25-15 chr4 36454624 36454808 + 1.5 NA Intergenic L1MA9|LINE|L1 -28288 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 218.25-20 chr15 57144837 57145061 + 1.5 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -74481 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 260.5-34 chr9 25781861 25782141 + 1.5 NA intron (NR_121604, intron 2 of 5) intron (NR_121604, intron 2 of 5) 1945 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 141-6 chr1 170450171 170450310 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -81882 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 187-6 chr12 27295304 27295580 + 1.5 NA intron (NM_015000, intron 1 of 13) MIRc|SINE|MIR -37394 NM_001248003 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 119.5-40 chr15 47152519 47152615 + 1.5 NA Intergenic Intergenic -31522 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 333.75-3 chr2 33555697 33556102 + 1.5 NA intron (NM_015376, intron 14 of 16) intron (NM_015376, intron 14 of 16) 13531 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 229.5-12 chr11 57132909 57133103 + 1.5 NA Intergenic AluSx|SINE|Alu -48947 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 194.75-29 chr3 130568288 130568507 + 1.5 NA exon (NM_001102608, exon 5 of 36) exon (NM_001102608, exon 5 of 36) 8063 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 202-24 chr6 99502105 99502356 + 1.5 NA intron (NR_144348, intron 5 of 12) MER77B|LTR|ERVL 13146 NM_001346033 85015 Hs.143410 NM_032929 ENSG00000123552 USP45 - ubiquitin specific peptidase 45 protein-coding 335.25-10 chr3 139021052 139021419 + 1.5 NA promoter-TSS (NM_001013650) promoter-TSS (NM_001013650) -309 NM_001013650 389151 Hs.531376 NM_001013650 ENSG00000184814 PRR23B - proline rich 23B protein-coding 189.25-10 chr12 109242920 109243253 + 1.5 NA intron (NM_001093, intron 37 of 52) L1ME4a|LINE|L1 66198 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 148.5 chr1 33031294 33031448 + 1.5 NA intron (NR_134976, intron 1 of 5) MIRb|SINE|MIR 5512 NM_001199199 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 200.25-37 chr4 165074810 165075045 + 1.5 NA 3' UTR (NM_001100389, exon 6 of 6) 3' UTR (NM_001100389, exon 6 of 6) 37933 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 226.25-16 chr2 69901436 69901781 + 1.5 NA intron (NR_037862, intron 4 of 6) AluJr|SINE|Alu 7652 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 171.5-28 chr14 77048157 77048393 + 1.5 NA intron (NR_110554, intron 1 of 3) intron (NR_110554, intron 1 of 3) 7226 NR_110554 283575 Hs.651736 NR_110554 ENSG00000246548 LINC02288 - long intergenic non-protein coding RNA 2288 ncRNA 225.75-7 chr1 238167829 238168063 + 1.5 NA Intergenic Intergenic -277024 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 130.5-43 chr2 14376463 14376609 + 1.5 NA intron (NR_103814, intron 1 of 3) AluSx|SINE|Alu 24422 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 377.75 chr11 60540750 60541167 + 1.5 NA intron (NM_001278320, intron 4 of 4) AluJb|SINE|Alu 25566 NM_001100909 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 209.5-36 chr5 7637633 7637932 + 1.5 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 213351 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 186-49 chr7 2873153 2873446 + 1.5 NA Intergenic Intergenic -28991 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 195.5-83 chr7 88780163 88780325 + 1.5 NA intron (NM_181646, intron 1 of 3) L1M1|LINE|L1 15493 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 156.5-20 chr14 47602741 47602920 + 1.5 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 72124 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 207-55 chr9 3273996 3274175 + 1.5 NA intron (NM_134428, intron 10 of 17) intron (NM_134428, intron 10 of 17) 92496 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 300.5-19 chr5 13241506 13241726 + 1.5 NA Intergenic Intergenic -208730 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 203.25-29 chr2 113224010 113224172 + 1.5 NA intron (NM_013992, intron 7 of 8) intron (NM_013992, intron 7 of 8) -11436 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 291-5 chr10 123497265 123497578 + 1.5 NA Intergenic Intergenic -168934 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 215-37 chr5 95326309 95326564 + 1.5 NA Intergenic L1P4|LINE|L1 -41861 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 267-4 chr12 15032768 15032975 + 1.5 NA Intergenic HUERS-P1-int|LTR|ERV1 31038 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 160.25-19 chr14 65357344 65357606 + 1.5 NA Intergenic Intergenic -22292 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 274.5-37 chr8 97077659 97077914 + 1.5 NA intron (NM_016134, intron 7 of 7) Tigger2b_Pri|DNA|TcMar-Tigger 200142 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 185-42 chr7 158715129 158715416 + 1.5 NA Intergenic L1M5|LINE|L1 -10468 NM_017760 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 141-20 chr14 40945453 40945605 + 1.5 NA Intergenic Intergenic -9182 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 275.75-15 chr3 127429889 127430295 + 1.5 NA Intergenic L1ME4a|LINE|L1 -39422 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 207.75-25 chr21 45726933 45727194 + 1.5 NA intron (NM_001348238, intron 2 of 16) L1MEc|LINE|L1 -20951 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 218.25-51 chr9 118542217 118542404 + 1.5 NA Intergenic Intergenic -137361 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 328 chr1 65956864 65957243 + 1.5 NA intron (NM_002600, intron 3 of 16) L1M4|LINE|L1 -35563 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 257-14 chr5 35328058 35328387 + 1.5 NA Intergenic L1PA13|LINE|L1 -97735 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 263.25-2 chr1 145724184 145724462 + 1.5 NA intron (NM_007053, intron 1 of 5) L1M5|LINE|L1 4824 NM_007053 11126 Hs.488237 NM_007053 ENSG00000117281 CD160 BY55|NK1|NK28 CD160 molecule protein-coding 302.75-8 chr6 137777406 137777630 + 1.5 NA Intergenic Intergenic -38481 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 214-36 chr5 78416281 78416552 + 1.5 NA intron (NR_110885, intron 3 of 7) intron (NR_110885, intron 3 of 7) 55799 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 407.25-6 chr5 128224168 128224561 + 1.5 NA Intergenic Intergenic 140598 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 315-13 chr6 67044026 67044305 + 1.5 NA Intergenic LTR16|LTR|ERVL -1011186 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 325.25-6 chr2 174833057 174833394 + 1.5 NA intron (NM_001025201, intron 7 of 12) L1MEc|LINE|L1 14393 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 269.5-24 chr6 96531954 96532305 + 1.5 NA intron (NM_015323, intron 6 of 18) intron (NM_015323, intron 6 of 18) 10323 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 252.75-8 chr16 10038069 10038364 + 1.5 NA intron (NM_001134408, intron 2 of 13) MLT1A0|LTR|ERVL-MaLR 143851 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 122-40 chr2 115793980 115794120 + 1.5 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 450235 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 216.75-10 chr11 5510461 5510679 + 1.5 NA promoter-TSS (NM_001347096) promoter-TSS (NM_001347096) -613 NM_001347096 50613 Hs.189184 NM_017481 ENSG00000175520 UBQLN3 TUP-1 ubiquilin 3 protein-coding 265-22 chr5 159093021 159093487 + 1.5 NA intron (NM_001324107, intron 4 of 15) intron (NM_001324107, intron 4 of 15) 4702 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 480.5 chr5 44379913 44380581 + 1.5 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -8485 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 211-17 chr2 68504117 68504357 + 1.5 NA intron (NM_173545, intron 3 of 9) L1M5|LINE|L1 36652 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 305.5-18 chr8 9594806 9595079 + 1.5 NA intron (NM_003747, intron 2 of 26) intron (NM_003747, intron 2 of 26) 39030 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 184.5-72 chr7 84298378 84298531 + 1.5 NA Intergenic Intergenic -103665 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 126.5-54 chr2 157352382 157352520 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -24739 NM_001009959 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 130.5-66 chr4 37978268 37978432 + 1.5 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 17952 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 191-17 chr17 43721552 43721826 + 1.5 NA Intergenic Intergenic 37102 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 224-10 chr17 63208635 63208920 + 1.5 NA intron (NM_025185, intron 6 of 25) L1ME3E|LINE|L1 231490 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 117.75-5 chr10 23571799 23571920 + 1.5 NA Intergenic L1M1|LINE|L1 -122868 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 152.5-31 chr14 47134272 47134390 + 1.5 NA intron (NM_001113498, intron 4 of 16) intron (NM_001113498, intron 4 of 16) 208915 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 205.75-4 chr10 53845685 53845946 + 1.5 NA intron (NM_001354411, intron 29 of 34) L1MA4|LINE|L1 -640415 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 253.5-14 chr14 51940570 51940787 + 1.5 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -22107 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 181.5-25 chr18 364193 364363 + 1.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -96231 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 169.5-87 chr9 8611103 8611227 + 1.5 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 122781 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 246.5-23 chr7 96239073 96239367 + 1.5 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -19464 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 270-7 chr15 60975673 60975919 + 1.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 253506 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 234-36 chr6 129382937 129383122 + 1.5 NA intron (NM_000426, intron 34 of 64) intron (NM_000426, intron 34 of 64) 327148 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 149.5-23 chr12 23357089 23357242 + 1.5 NA Intergenic Intergenic 181529 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 291.75-3 chr13 38229623 38229918 + 1.5 NA Intergenic L1M5|LINE|L1 -86538 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 266.75-3 chr2 59979320 59979591 + 1.5 NA Intergenic MARNA|DNA|TcMar-Mariner 403581 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 210.75-6 chr1 226766807 226767050 + 1.5 NA Intergenic HAL1b|LINE|L1 -27753 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 153.5-73 chr4 115425171 115425387 + 1.5 NA Intergenic MER61D|LTR|ERV1 -311659 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 444.5-2 chr10 65975072 65975675 + 1.5 NA intron (NM_001127384, intron 16 of 17) intron (NM_001127384, intron 16 of 17) 403948 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 155-54 chr6 154106369 154106548 + 1.5 NA intron (NR_104348, intron 4 of 4) PABL_A-int|LTR|ERV1 16696 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 158.5-92 chr7 24642039 24642245 + 1.5 NA intron (NM_016447, intron 4 of 12) intron (NM_016447, intron 4 of 12) 68690 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 268.5-24 chr5 18237005 18237362 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR 429909 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 212.25-18 chr17 57469057 57469240 + 1.5 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 54449 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 358.25-5 chr2 35232652 35233172 + 1.5 NA Intergenic L1PA13|LINE|L1 -238493 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 205.25-32 chr5 60254593 60254871 + 1.5 NA intron (NM_001364599, intron 1 of 16) MIR|SINE|MIR 117931 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 253.5-34 chr5 43602022 43602224 + 1.5 NA promoter-TSS (NM_012343) promoter-TSS (NM_012343) -552 NM_012343 23530 Hs.482043 NM_012343 ENSG00000112992 NNT GCCD4 nicotinamide nucleotide transhydrogenase protein-coding 208.5-19 chr14 23827758 23827909 + 1.5 NA Intergenic LTR16E2|LTR|ERVL -125937 NM_021004 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 331.5-6 chr4 80913775 80914099 + 1.5 NA intron (NM_152770, intron 4 of 5) L1ME1|LINE|L1 -116771 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 263-15 chr20 43186380 43186594 + 1.5 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 3419 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 234.75-46 chr9 82453941 82454160 + 1.5 NA Intergenic Intergenic 465278 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 212.5-44 chr4 154007756 154008049 + 1.5 NA Intergenic L1MA4|LINE|L1 -218819 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 260-9 chr15 70764341 70764626 + 1.5 NA promoter-TSS (NM_018003) promoter-TSS (NM_018003) -925 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 245-37 chr8 126393466 126393703 + 1.5 NA Intergenic Intergenic 68089 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 227-6 chr10 60653000 60653223 + 1.5 NA intron (NM_001204403, intron 1 of 43) L1M4a1|LINE|L1 -80155 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 194.25-51 chr8 140618508 140618659 + 1.5 NA intron (NM_001164623, intron 1 of 17) intron (NM_001164623, intron 1 of 17) 17050 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 377.25-8 chr8 121797367 121797859 + 1.5 NA Intergenic Intergenic -156173 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 249.5-19 chr3 134236993 134237185 + 1.5 NA intron (NM_001005861, intron 1 of 14) intron (NM_001005861, intron 1 of 14) 13655 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 228-19 chr18 13784615 13784914 + 1.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -39385 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 157.75-22 chr12 131239664 131239796 + 1.5 NA Intergenic L1MCc|LINE|L1 58242 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 235-36 chr5 87810446 87810626 + 1.5 NA Intergenic L1MC4|LINE|L1 148494 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 216-22 chr2 107192284 107192568 + 1.5 NA intron (NR_049853, intron 2 of 3) L1MCa|LINE|L1 157099 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 229.25-31 chr9 95921338 95921614 + 1.5 NA intron (NM_020207, intron 7 of 18) A-rich|Low_complexity|Low_complexity 45468 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 164-40 chr3 174802074 174802237 + 1.5 NA Intergenic L2a|LINE|L2 -57179 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 196.5-77 chr9 9940467 9940636 + 1.5 NA intron (NM_002839, intron 4 of 45) MIRc|SINE|MIR 141159 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 253.25-33 chr8 59401840 59402035 + 1.5 NA Intergenic L1MB3|LINE|L1 282727 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 290.5-11 chr14 76793850 76794138 + 1.5 NA intron (NM_001370747, intron 9 of 11) MER44A|DNA|TcMar-Tigger -7270 NR_104184 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 346-3 chr12 17898633 17898900 + 1.5 NA Intergenic Intergenic 191427 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 223-10 chr12 39932296 39932511 + 1.5 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 173678 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 208.5-50 chr3 81975030 81975270 + 1.5 NA Intergenic Intergenic -10992 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 289.75-3 chr11 78914066 78914511 + 1.5 NA intron (NM_001098816, intron 6 of 33) L3|LINE|CR1 -339424 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 162.75-49 chr4 34041543 34041742 + 1.5 NA Intergenic (ATATCT)n|Simple_repeat|Simple_repeat -1749 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 207.5-58 chr7 52603934 52604122 + 1.5 NA Intergenic L1MB4|LINE|L1 -431605 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 208.25-33 chr5 86468686 86468890 + 1.5 NA Intergenic Intergenic -149153 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 183-23 chr14 60415971 60416149 + 1.5 NA Intergenic Intergenic 70003 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 285-6 chr10 118850097 118850408 + 1.5 NA Intergenic L1MC5|LINE|L1 -95282 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 144-63 chr6 70111968 70112120 + 1.5 NA intron (NM_001858, intron 16 of 50) intron (NM_001858, intron 16 of 50) 171153 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 202.5-19 chr2 45203270 45203510 + 1.5 NA intron (NR_033831, intron 1 of 5) L1M2|LINE|L1 51551 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 202.5-22 chr21 42695492 42695749 + 1.5 NA intron (NM_001001577, intron 2 of 15) intron (NM_001001577, intron 2 of 15) 41868 NM_001001583 5152 Hs.473927 NM_002606 ENSG00000160191 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 213-30 chr22 31244305 31244547 + 1.5 NA intron (NM_005569, intron 2 of 15) intron (NM_005569, intron 2 of 15) -3958 NM_016733 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 220.5-22 chr19 30014123 30014516 + 1.5 NA intron (NM_001252641, intron 10 of 10) Tigger8|DNA|TcMar-Tigger 72080 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 171-53 chr7 54527752 54527978 + 1.5 NA Intergenic AluSx|SINE|Alu -14460 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 328.5-15 chr5 45244306 45244848 + 1.5 NA Intergenic L1PA13|LINE|L1 435630 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 382-4 chr5 35723908 35724221 + 1.5 NA intron (NM_024867, intron 20 of 36) MIRb|SINE|MIR 106201 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 262.5-26 chr3 89820599 89820825 + 1.5 NA Intergenic L1PA15|LINE|L1 713091 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 225.75-14 chr2 190854274 190854565 + 1.5 NA Intergenic UCON132b|DNA|hAT-Tip100 -26402 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 128.25-80 chr8 93842249 93842367 + 1.5 NA Intergenic Intergenic 73811 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 223.75-16 chr3 83107087 83107352 + 1.5 NA Intergenic Intergenic 1121077 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 245-10 chr14 45366655 45366956 + 1.5 NA Intergenic MER39|LTR|ERV1 -113603 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 265-32 chr9 105531380 105531749 + 1.5 NA intron (NM_001287191, intron 10 of 13) intron (NM_001287191, intron 10 of 13) 11740 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 342.5-9 chr8 74555161 74555591 + 1.5 NA Intergenic Intergenic -6767 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 199-35 chr4 171316737 171316898 + 1.5 NA Intergenic Intergenic 130633 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 210.5-54 chr6 140505203 140505429 + 1.5 NA Intergenic Intergenic -178498 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 137-52 chr3 197014084 197014236 + 1.5 NA intron (NM_005929, intron 9 of 15) L1MA5A|LINE|L1 11254 NR_038285 100507057 Hs.666451 NR_038285 ENSG00000228109 MELTF-AS1 MFI2-AS1 MELTF antisense RNA 1 ncRNA 218-3 chr1 162899020 162899292 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -30341 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 249.25-11 chr19 46807388 46807779 + 1.5 NA Intergenic AluJo|SINE|Alu -18989 NM_005628 6510 Hs.631582 NM_005628 ENSG00000105281 SLC1A5 AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC solute carrier family 1 member 5 protein-coding 142.5-56 chr3 103190354 103190514 + 1.5 NA Intergenic Intergenic 333682 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 235.5-54 chr7 131397401 131397642 + 1.5 NA intron (NM_001145354, intron 6 of 18) MIR|SINE|MIR 69645 NM_013255 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 156-62 chr7 47958580 47958738 + 1.5 NA Intergenic L1MA6|LINE|L1 -10168 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 280.5-11 chr19 39801765 39801996 + 1.5 NA Intergenic L1M4b|LINE|L1 25286 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 182-42 chr8 133810251 133810403 + 1.5 NA Intergenic Intergenic -32975 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 213-4 chr1 48949587 48949859 + 1.5 NA intron (NM_001323575, intron 5 of 12) LTR78|LTR|ERV1 -172754 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 197.5-50 chr5 112341965 112342198 + 1.5 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 77196 NM_001347888 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 205.5-37 chr3 44878974 44879135 + 1.5 NA intron (NM_003241, intron 1 of 13) L1MEd|LINE|L1 4446 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 188-40 chr7 36131087 36131272 + 1.5 NA Intergenic L2a|LINE|L2 -22075 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 140.25-11 chr10 121119369 121119516 + 1.5 NA Intergenic Intergenic 268080 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 403-4 chr2 35278315 35278785 + 1.5 NA Intergenic L1PA15|LINE|L1 -192855 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 184.25-48 chr7 48318122 48318261 + 1.5 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 146733 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 328.25-2 chr10 58751319 58751601 + 1.5 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 36445 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 197.25-30 chr16 7526317 7526476 + 1.5 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 193551 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 171.25-25 chr18 43350211 43350401 + 1.5 NA Intergenic Intergenic -72816 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 208.5-14 chr12 41156117 41156272 + 1.5 NA Intergenic Intergenic -32126 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 134.25-11 chr10 112700213 112700385 + 1.5 NA intron (NM_001365713, intron 8 of 8) MIRc|SINE|MIR 66129 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 176.25-15 chr12 43211676 43211834 + 1.5 NA Intergenic Intergenic 56440 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 165-35 chr2 192831539 192831673 + 1.5 NA Intergenic Intergenic 81761 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 192.5-33 chr20 52093915 52094160 + 1.5 NA intron (NM_199427, intron 7 of 8) intron (NM_199427, intron 7 of 8) 11447 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 171-55 chr7 84903276 84903455 + 1.5 NA Intergenic Intergenic 218566 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 194.5-85 chrX 68879027 68879164 + 1.5 NA Intergenic Intergenic 50098 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 268.5-19 chr22 27926519 27926875 + 1.5 NA intron (NR_026963, intron 1 of 4) L1ME2|LINE|L1 -6085 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 237-30 chr5 108584344 108584532 + 1.5 NA Intergenic Intergenic 143823 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 218.75-11 chr12 80963316 80963508 + 1.5 NA Intergenic L1MB7|LINE|L1 -25497 NM_004664 8825 Hs.144333 NM_004664 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1 lin-7 homolog A, crumbs cell polarity complex component protein-coding 113-64 chr3 148628758 148628841 + 1.5 NA Intergenic L1ME1|LINE|L1 -69072 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 250-4 chr10 130453515 130453879 + 1.5 NA Intergenic Intergenic 317288 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 228-7 chr11 13432402 13432684 + 1.5 NA intron (NM_001297741, intron 1 of 7) L1MD2|LINE|L1 7736 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 154-17 chr14 28657211 28657380 + 1.5 NA Intergenic Intergenic 108024 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 228.75-16 chr16 53800418 53800651 + 1.5 NA intron (NM_001363897, intron 1 of 7) L1MEc|LINE|L1 96378 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 210.75-26 chr4 63520177 63520558 + 1.5 NA Intergenic L1MCa|LINE|L1 889083 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 258.75-2 chr1 105338122 105338499 + 1.5 NA Intergenic Intergenic 280625 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 265.5-4 chr10 58542787 58543107 + 1.5 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 30075 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 135-15 chr10 116858742 116858870 + 1.5 NA intron (NM_001242699, intron 3 of 13) intron (NM_001242699, intron 3 of 13) -9084 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 129-78 chr8 88649250 88649365 + 1.5 NA Intergenic Intergenic -321824 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 171-39 chr3 119941937 119942160 + 1.5 NA intron (NM_002093, intron 3 of 11) intron (NM_002093, intron 3 of 11) 142600 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 264.5-21 chr4 15385628 15385988 + 1.5 NA intron (NM_001135171, intron 1 of 2) intron (NM_001135171, intron 1 of 2) 11257 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 177-20 chr17 60699664 60699795 + 1.5 NA intron (NM_001330413, intron 4 of 25) intron (NM_001330413, intron 4 of 25) 21878 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 328.5-2 chr10 65367557 65367932 + 1.5 NA Intergenic Intergenic -203681 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 209-13 chr18 55521967 55522145 + 1.5 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -11284 NM_001348211 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 182-40 chr7 119009055 119009501 + 1.5 NA Intergenic Intergenic 784574 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 207-23 chr19 43683981 43684247 + 1.5 NA Intergenic MIR3|SINE|MIR -13768 NM_001005376 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 318.5-13 chr2 121915005 121915363 + 1.5 NA Intergenic Intergenic 159533 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 164.75-66 chr8 89104063 89104366 + 1.5 NA Intergenic HSMAR1|DNA|TcMar-Mariner 653497 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 194.25-21 chr18 25013633 25013882 + 1.5 NA Intergenic L1ME2|LINE|L1 -25778 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 250.5 chr1 188487255 188487692 + 1.5 NA Intergenic Intergenic 1043845 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 168.75-62 chr8 126098845 126099033 + 1.5 NA Intergenic LTR57-int|LTR|ERVL -147742 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 229.25 chr1 200448077 200448283 + 1.5 NA Intergenic Intergenic -38144 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 331.75-4 chr17 58875719 58876079 + 1.5 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 120030 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 149-61 chr9 122327415 122327621 + 1.5 NA non-coding (NR_144421, exon 9 of 9) non-coding (NR_144421, exon 9 of 9) -43015 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 266.25-13 chr2 99806036 99806328 + 1.5 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 299401 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 186-36 chr4 96072034 96072251 + 1.5 NA Intergenic L2|LINE|L2 232049 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 218-39 chr5 97039011 97039304 + 1.5 NA Intergenic Tigger8|DNA|TcMar-Tigger 80724 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 194.5-66 chr6 154363640 154363983 + 1.5 NA Intergenic MamTip2|DNA|hAT-Tip100 -7045 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 183-75 chrX 141674907 141675075 + 1.5 NA Intergenic Intergenic 23748 NM_032417 64648 Hs.375036 NM_032417 ENSG00000196406 SPANXD CT11.3|CT11.4|SPANX-C|SPANX-D|SPANX-E|SPANXC|SPANXE|dJ171K16.1 SPANX family member D protein-coding 228-35 chr5 179134267 179134425 + 1.5 NA intron (NM_014244, intron 13 of 21) MER74B|LTR|ERVL 73973 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 285.75-20 chr4 58957910 58958377 + 1.5 NA Intergenic Intergenic -26139 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 150.25-75 chr8 117294959 117295164 + 1.5 NA Intergenic Intergenic 160066 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 252.75-11 chr2 32461453 32461688 + 1.5 NA intron (NM_016252, intron 23 of 73) intron (NM_016252, intron 23 of 73) -70583 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 210.75-7 chr12 13977998 13978190 + 1.5 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 2262 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 332-7 chr2 171208266 171208610 + 1.5 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) 22855 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 369.75-11 chr6 43481075 43481456 + 1.5 NA intron (NM_001350561, intron 3 of 11) intron (NM_001350561, intron 3 of 11) 3695 NM_001350570 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 196.5-38 chr18 60255156 60255404 + 1.5 NA Intergenic Intergenic 117495 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 168-16 chr10 78712470 78712620 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 354903 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 167-29 chr2 27974587 27974778 + 1.5 NA intron (NM_199193, intron 4 of 13) L1ME1|LINE|L1 -21685 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 164.5-9 chr10 25626656 25626805 + 1.5 NA Intergenic L1PB4|LINE|L1 -24982 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 199.5-25 chr2 21592512 21592651 + 1.5 NA Intergenic L3|LINE|CR1 118071 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 200.25-8 chr10 42774164 42774314 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -8556 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 196-14 chr12 102635438 102635666 + 1.5 NA Intergenic L2b|LINE|L2 -154989 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 212-6 chr10 70892444 70892668 + 1.5 NA Intergenic AluJo|SINE|Alu -3991 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 197-12 chr13 77955144 77955485 + 1.5 NA intron (NM_000115, intron 1 of 7) L1MB1|LINE|L1 20213 NM_000115 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 167.5-79 chr7 54557117 54557328 + 1.5 NA non-coding (NR_038994, exon 1 of 4) non-coding (NR_038994, exon 1 of 4) 252 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 196.25-9 chr11 37234199 37234413 + 1.5 NA Intergenic MER50|LTR|ERV1 -636027 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 149.75-19 chr15 52263513 52263746 + 1.5 NA intron (NM_018728, intron 9 of 40) L2a|LINE|L2 13571 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 199-51 chr8 140642218 140642398 + 1.5 NA Intergenic Intergenic -6675 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 164-52 chr6 128603948 128604135 + 1.5 NA Intergenic Intergenic -83442 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 196.75-23 chr22 21038516 21038777 + 1.5 NA Intergenic MER34B-int|LTR|ERV1 -4374 NR_030379 693234 NR_030379 ENSG00000207575 MIR649 MIRN649|hsa-mir-649 microRNA 649 ncRNA 178-13 chr11 100224646 100224848 + 1.5 NA exon (NM_014361, exon 16 of 25) exon (NM_014361, exon 16 of 25) -462541 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 272.5-22 chr6 148923345 148923638 + 1.5 NA intron (NM_005715, intron 2 of 7) L1MB7|LINE|L1 41193 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 248.5-14 chr2 75573298 75573553 + 1.5 NA Intergenic Intergenic -3706 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 137-9 chr10 12875349 12875487 + 1.5 NA Intergenic Intergenic 126295 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 155.25-37 chr2 178909700 178909810 + 1.5 NA intron (NM_001316745, intron 7 of 11) intron (NM_001316745, intron 7 of 11) -102332 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 278-6 chr12 41901595 41901927 + 1.5 NA Intergenic L1MA7|LINE|L1 137572 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 165.75 chr1 3791348 3791594 + 1.5 NA intron (NM_020710, intron 1 of 6) AluSp|SINE|Alu 5027 NM_020710 57470 Hs.268488 NM_020710 ENSG00000130764 LRRC47 - leucine rich repeat containing 47 protein-coding 386.5-3 chr14 41762431 41762729 + 1.5 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 155724 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 117-35 chr2 29606367 29606512 + 1.5 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -131062 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 223-11 chr12 116023114 116023309 + 1.5 NA intron (NM_015335, intron 4 of 30) AluJr|SINE|Alu 125443 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 371.5-9 chrX 83276621 83276917 + 1.5 NA Intergenic Intergenic -231521 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 213.75-16 chr12 14697960 14698185 + 1.5 NA Intergenic L2a|LINE|L2 -1473 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 175.75-44 chr6 134752745 134753057 + 1.5 NA Intergenic Intergenic 197200 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 201.5-17 chr14 72686244 72686468 + 1.5 NA intron (NM_001280544, intron 7 of 9) MIRb|SINE|MIR 169536 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 326.25 chr11 59153994 59154304 + 1.5 NA 3' UTR (NM_001312911, exon 4 of 4) 3' UTR (NM_001312911, exon 4 of 4) 9287 NM_022074 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 170.25-47 chr3 159938866 159939001 + 1.5 NA intron (NR_108088, intron 9 of 9) intron (NR_108088, intron 9 of 9) -49902 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 179-31 chr2 59392084 59392235 + 1.5 NA Intergenic Intergenic 174451 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 231-10 chr12 52898330 52898539 + 1.5 NA TTS (NR_162090) TTS (NR_162090) 550 NR_162090 113218482 NR_162090 MIR9898 - microRNA 9898 ncRNA 389.25-5 chr3 80803079 80803515 + 1.5 NA Intergenic Intergenic 32593 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 210.75-20 chr3 97310347 97310520 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -129174 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 249-42 chr8 59839260 59839496 + 1.5 NA Intergenic Intergenic 442022 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 207-50 chr7 71924416 71924679 + 1.5 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 412844 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 260.5-27 chr5 32351417 32351638 + 1.5 NA Intergenic L1ME4b|LINE|L1 -38588 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 339.5-8 chr2 184304644 184305011 + 1.5 NA Intergenic Intergenic -74148 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 174.5-34 chr18 6665572 6665692 + 1.5 NA Intergenic Intergenic -64084 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 197.5-54 chr6 92589584 92589728 + 1.5 NA Intergenic Intergenic 829903 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 225-19 chr22 43646967 43647175 + 1.5 NA intron (NM_198856, intron 15 of 29) L1MC1|LINE|L1 130817 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 174.5-12 chr11 14397566 14397748 + 1.5 NA Intergenic L1MC4|LINE|L1 -33151 NM_001177314 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 261-17 chr15 67336725 67336972 + 1.5 NA intron (NM_001322475, intron 3 of 17) intron (NM_001322475, intron 3 of 17) -81650 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 225-2 chr1 37846054 37846248 + 1.5 NA intron (NM_005955, intron 2 of 10) L2c|LINE|L2 13441 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 130.5-75 chr6 36109829 36109958 + 1.5 NA 3' UTR (NM_001315, exon 12 of 12) 3' UTR (NM_001315, exon 12 of 12) -20620 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 225.75 chr1 78562060 78562265 + 1.5 NA Intergenic Intergenic -58286 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 265-11 chr17 12792631 12792811 + 1.5 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) -2437 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 299.5-11 chr5 133554439 133554678 + 1.5 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 57983 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 343.5-8 chr8 110102666 110102926 + 1.5 NA Intergenic Intergenic -127025 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 376.5-7 chr8 76936707 76937029 + 1.5 NA Intergenic AluSz|SINE|Alu 29982 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 300.75-9 chr4 140982537 140982929 + 1.5 NA intron (NM_020724, intron 1 of 6) Tigger4|DNA|TcMar-Tigger 150736 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 369.75-5 chr14 29040492 29040943 + 1.5 NA Intergenic Intergenic -254930 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 371.5-3 chr11 25671830 25672134 + 1.5 NA Intergenic Intergenic -517141 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 267.5-27 chr5 157019385 157019702 + 1.5 NA Intergenic L1MC1|LINE|L1 38698 NM_012206 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 156.5-23 chr14 66060206 66060318 + 1.5 NA Intergenic Intergenic -426109 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 243-2 chr1 169635746 169636046 + 1.5 NA Intergenic L1MA8|LINE|L1 -5772 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 150-4 chr1 44449023 44449183 + 1.5 NA intron (NM_001319957, intron 1 of 13) MIRb|SINE|MIR 25102 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 264-17 chr2 149560012 149560260 + 1.5 NA Intergenic Intergenic -27222 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 253.5-4 chr1 179909687 179909982 + 1.5 NA intron (NM_001267578, intron 8 of 9) AluSz|SINE|Alu 27792 NM_015602 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 159.25-31 chr2 11249871 11249991 + 1.5 NA intron (NM_001321643, intron 3 of 32) intron (NM_001321643, intron 3 of 32) 94464 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 179-29 chr2 39300667 39300809 + 1.5 NA intron (NM_001270425, intron 14 of 32) L2c|LINE|L2 -56755 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 349-12 chr8 118867337 118867733 + 1.5 NA Intergenic Intergenic 84350 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 137.5-63 chr2 159271508 159271618 + 1.5 NA intron (NM_001330280, intron 4 of 9) L1ME3B|LINE|L1 15140 NM_001307994 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 191-21 chr2 58763548 58763714 + 1.5 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 242878 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 381-6 chr4 34903848 34904162 + 1.5 NA Intergenic Intergenic -634258 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 285.5-5 chr14 61171190 61171406 + 1.5 NA Intergenic Intergenic 110040 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 138-52 chr3 184862872 184862978 + 1.5 NA exon (NM_015303, exon 15 of 47) exon (NM_015303, exon 15 of 47) 50418 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 133.25-28 chr15 63408041 63408288 + 1.5 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 17934 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 174-16 chr15 99376092 99376243 + 1.5 NA intron (NR_135755, intron 8 of 8) L1MD|LINE|L1 118642 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 161.5-3 chr1 75361348 75361491 + 1.5 NA intron (NM_001320283, intron 1 of 21) L1MA7|LINE|L1 227031 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 256.5-20 chr2 126083705 126084087 + 1.5 NA Intergenic L1MC1|LINE|L1 34089 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 230-16 chr20 11299094 11299368 + 1.5 NA Intergenic L1MB8|LINE|L1 -25848 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 291.75-17 chr5 162307468 162307827 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie 240005 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 251.25-17 chr2 151126765 151127085 + 1.5 NA Intergenic AluJb|SINE|Alu 134938 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 181.5-51 chr5 21200856 21200999 + 1.5 NA Intergenic L1MEc|LINE|L1 -258553 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 236.25-29 chr4 88796994 88797203 + 1.5 NA intron (NM_001265578, intron 1 of 16) intron (NM_001265578, intron 1 of 16) 26263 NM_001265580 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 213.25-20 chr2 61042380 61042541 + 1.5 NA intron (NM_002618, intron 2 of 3) Cheshire|DNA|hAT-Charlie -23410 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 137.25-53 chr3 70062034 70062125 + 1.5 NA Intergenic L2a|LINE|L2 62335 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 353.5 chr10 20011774 20012250 + 1.5 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 195580 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 143.5-30 chr13 65333511 65333627 + 1.5 NA Intergenic Intergenic -532478 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 223.5-36 chr2 152971023 152971295 + 1.5 NA Intergenic HERV4_I-int|LTR|ERV1 252522 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 183.25-13 chr13 94958061 94958263 + 1.5 NA Intergenic Intergenic -1879 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 284.5 chr1 29193901 29194315 + 1.5 NA exon (NM_001024732, exon 10 of 10) exon (NM_001024732, exon 10 of 10) -12208 NM_005626 6429 Hs.469970 NM_005626 ENSG00000116350 SRSF4 SFRS4|SRP75 serine and arginine rich splicing factor 4 protein-coding 228-21 chr2 61786077 61786308 + 1.5 NA Intergenic L2c|LINE|L2 67868 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 205.5-66 chrX 68179170 68179399 + 1.5 NA intron (NM_002547, intron 15 of 24) intron (NM_002547, intron 15 of 24) 254211 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 259-24 chr4 79880580 79880839 + 1.5 NA Intergenic L2c|LINE|L2 53238 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 252-22 chr3 173486503 173486806 + 1.5 NA intron (NM_014932, intron 2 of 6) L1MEh|LINE|L1 88910 NM_001365926 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 141-18 chr13 47060230 47060351 + 1.5 NA Intergenic L1MB3|LINE|L1 -163214 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 263-9 chr15 100615558 100615870 + 1.5 NA intron (NM_198243, intron 4 of 5) L1ME4b|LINE|L1 13125 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 211.25-6 chr10 19774958 19775126 + 1.5 NA Intergenic Intergenic -41390 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 273.5-5 chr10 86225962 86226245 + 1.5 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 38685 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 232.5-23 chr20 4349234 4349555 + 1.5 NA Intergenic L1MB8|LINE|L1 -100107 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 238-38 chr8 141085231 141085424 + 1.5 NA Intergenic MER45B|DNA|hAT-Tip100 -43262 NM_014957 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 227.25-18 chr18 8258625 8258811 + 1.5 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 108316 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 245.25-24 chr5 146214011 146214286 + 1.5 NA intron (NM_018989, intron 1 of 20) intron (NM_018989, intron 1 of 20) 10543 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 174.5-45 chr20 4101613 4101975 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -46985 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 191.5-24 chr16 49994231 49994501 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -30840 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 206.25-32 chr5 160369148 160369406 + 1.5 NA intron (NM_001366504, intron 1 of 3) intron (NM_001366504, intron 1 of 3) 1349 NM_001366504 114898 Hs.110062 NM_031908 ENSG00000145861 C1QTNF2 CTRP2|zacrp2 C1q and TNF related 2 protein-coding 165.75-30 chr18 59759165 59759359 + 1.5 NA Intergenic Intergenic -61839 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 304.5-5 chr2 49817687 49817961 + 1.5 NA Intergenic L2|LINE|L2 156379 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 171-6 chr1 97465691 97465862 + 1.5 NA intron (NM_000110, intron 13 of 22) THE1B|LTR|ERVL-MaLR -331145 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 244.25-19 chr4 46327132 46327523 + 1.5 NA intron (NM_001286827, intron 3 of 9) intron (NM_001286827, intron 3 of 9) 62052 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 222.5-35 chr4 6739149 6739384 + 1.5 NA Intergenic AluSx1|SINE|Alu 23092 NM_018366 55330 Hs.7570 NM_018366 ENSG00000186222 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex 1 subunit 4 protein-coding 117.75-86 chrX 47596710 47596825 + 1.5 NA intron (NM_006950, intron 5 of 12) L1M4|LINE|L1 9338 NR_039926 100616147 NR_039926 ENSG00000263858 MIR4769 - microRNA 4769 ncRNA 141.5-44 chr17 62913762 62913879 + 1.5 NA Intergenic Intergenic -30395 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 270-12 chr17 58715997 58716261 + 1.5 NA intron (NM_058216, intron 5 of 8) intron (NM_058216, intron 5 of 8) 23527 NR_103872 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 169.75-41 chr21 30461053 30461266 + 1.5 NA Intergenic Intergenic 19208 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 125.25-64 chr5 67744171 67744301 + 1.5 NA Intergenic L1ME4b|LINE|L1 -48977 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 128.5-19 chr12 132561850 132562030 + 1.5 NA intron (NM_001142641, intron 5 of 16) intron (NM_001142641, intron 5 of 16) -20057 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 152.5-39 chr15 86107257 86107429 + 1.5 NA intron (NR_120368, intron 3 of 5) MIRb|SINE|MIR 9374 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 123.75-81 chr4 51861581 51861700 + 1.5 NA intron (NM_001287757, intron 2 of 11) intron (NM_001287757, intron 2 of 11) 18061 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 114.75-11 chr10 46284852 46284973 + 1.5 NA promoter-TSS (NR_160731) promoter-TSS (NR_160731) 62 NR_160731 105378577 Hs.646293 NR_160731 LOC105378577 - uncharacterized LOC105378577 ncRNA 408 chr11 113927159 113927494 + 1.5 NA intron (NM_006028, intron 2 of 8) L1M|LINE|L1 18485 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 275.25-23 chrX 43463977 43464254 + 1.5 NA Intergenic Intergenic -190792 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 175.5-53 chr3 156582270 156582408 + 1.5 NA Intergenic L2c|LINE|L2 -27139 NM_007107 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 213-50 chr8 120251454 120251683 + 1.5 NA intron (NM_021110, intron 22 of 47) intron (NM_021110, intron 22 of 47) 126466 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 230.25-30 chr7 7486362 7486563 + 1.5 NA intron (NM_001037763, intron 13 of 34) L1MD|LINE|L1 49411 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 204-4 chr1 223788568 223788823 + 1.5 NA intron (NM_005426, intron 17 of 18) intron (NM_005426, intron 17 of 18) 57252 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 293.5-17 chr4 72497255 72497601 + 1.5 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 71793 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 259-14 chr2 100769944 100770322 + 1.5 NA Intergenic AluSx1|SINE|Alu -50006 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 330.25-3 chr14 69311218 69311671 + 1.5 NA intron (NM_020692, intron 1 of 15) MLT1A1|LTR|ERVL-MaLR 51286 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 303.75-9 chr8 134227407 134227851 + 1.5 NA Intergenic Intergenic 341133 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 270.25-15 chr5 84998174 84998413 + 1.5 NA Intergenic L1ME3A|LINE|L1 -613413 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 167.5-3 chr1 193750723 193750883 + 1.5 NA Intergenic Intergenic 446058 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 138.25-40 chr2 68267033 68267150 + 1.5 NA Intergenic L1PB4|LINE|L1 -14559 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 170.25-13 chr12 54915211 54915398 + 1.5 NA Intergenic HAL1|LINE|L1 58428 NR_147067 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 202-33 chrX 42775097 42775286 + 1.5 NA Intergenic Intergenic 2972 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 227.5-36 chr3 187349799 187349951 + 1.5 NA Intergenic Intergenic -18510 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 176.25-22 chr15 87336564 87336693 + 1.5 NA Intergenic L1MC3|LINE|L1 -240301 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 184.25-43 chr6 50750938 50751129 + 1.5 NA intron (NM_172238, intron 6 of 7) intron (NM_172238, intron 6 of 7) 37489 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 153-9 chr14 64350306 64350467 + 1.5 NA Intergenic HAL1|LINE|L1 -2775 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 206-38 chr9 84116052 84116317 + 1.5 NA Intergenic L1MA3|LINE|L1 52741 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 217-7 chr14 24498964 24499202 + 1.5 NA intron (NR_110032, intron 2 of 2) intron (NR_110032, intron 2 of 2) 9182 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 319.5-14 chr6 44281718 44281989 + 1.5 NA intron (NM_182539, intron 4 of 4) MIRb|SINE|MIR 11403 NM_001137560 441151 Hs.632851 NM_001039704 ENSG00000178233 TMEM151B C6orf137|TMEM193|bA444E17.5 transmembrane protein 151B protein-coding 146.25-60 chr6 22821656 22821805 + 1.5 NA Intergenic Intergenic -103806 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 132.5-4 chr1 178793259 178793364 + 1.5 NA intron (NM_152663, intron 4 of 19) intron (NM_152663, intron 4 of 19) 68067 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 209.5-8 chr14 73233487 73233727 + 1.5 NA Intergenic Intergenic -3899 NR_158678 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 159.5-3 chr1 86788291 86788450 + 1.5 NA Intergenic L1MB2|LINE|L1 83794 NM_001206652 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 207-7 chr10 65335321 65335586 + 1.5 NA Intergenic Intergenic -235972 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 293-10 chr17_KI270859v1_alt 27500 27804 + 1.5 NA NA Intergenic NA NA 198.75-20 chr2 12069064 12069309 + 1.5 NA intron (NR_110196, intron 2 of 5) L1ME1|LINE|L1 62070 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 443.25-2 chr5 64495023 64495475 + 1.5 NA Intergenic Intergenic -10766 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 278.75-9 chr4 39845833 39846077 + 1.5 NA intron (NM_001100399, intron 28 of 32) intron (NM_001100399, intron 28 of 32) 131956 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 157-3 chr1 55337280 55337400 + 1.5 NA Intergenic Intergenic 111699 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 329.5-13 chr8 25285192 25285512 + 1.5 NA intron (NM_024940, intron 5 of 51) AluSq2|SINE|Alu -60050 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 223-23 chr2 176366662 176366938 + 1.5 NA Intergenic Intergenic 97358 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 152.5-15 chr10 65176857 65177061 + 1.5 NA Intergenic L1PA15|LINE|L1 -252441 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 259.5-7 chr10 99849820 99850083 + 1.5 NA intron (NM_000392, intron 30 of 31) intron (NM_000392, intron 30 of 31) 64141 NM_001318327 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 162.75-19 chr14 51875268 51875413 + 1.5 NA intron (NM_001243774, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 14728 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 188.25-33 chr3 23614129 23614301 + 1.5 NA Intergenic L1MB7|LINE|L1 -191740 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 120-43 chr2 26904973 26905091 + 1.5 NA intron (NM_020134, intron 2 of 12) intron (NM_020134, intron 2 of 12) 56608 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 266.5-5 chr11 15718604 15718799 + 1.5 NA Intergenic Intergenic 74816 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 265.5-23 chr6 147779370 147779696 + 1.5 NA Intergenic AluSx|SINE|Alu 270843 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 330-3 chr17 48339262 48339609 + 1.5 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 45088 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 169.5-54 chr4 29588032 29588194 + 1.5 NA Intergenic Intergenic 373821 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 368.25-2 chr7 42203068 42203460 + 1.5 NA intron (NM_000168, intron 2 of 14) L1MA8|LINE|L1 33945 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 126.5-106 chr7 11152569 11152686 + 1.5 NA intron (NR_033436, intron 16 of 16) L2a|LINE|L2 178755 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 181.5-39 chr2 165720710 165720947 + 1.5 NA Intergenic Intergenic 73419 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 160.75-44 chr3 126601180 126601316 + 1.5 NA Intergenic L1ME2|LINE|L1 -42316 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 250-33 chr9 28915857 28916162 + 1.5 NA intron (NM_001354574, intron 2 of 5) MER4D1|LTR|ERV1 -27054 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 214.5-52 chr6 54285413 54285586 + 1.5 NA Intergenic Intergenic -22942 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 230.5-54 chr8 40863886 40864080 + 1.5 NA intron (NM_024645, intron 1 of 6) L2a|LINE|L2 33843 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 144-26 chr14 66354362 66354488 + 1.5 NA Intergenic L1MB7|LINE|L1 -131946 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 177.75-29 chr21 31459767 31459978 + 1.5 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) 99215 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 281.25-8 chr21 34690324 34690545 + 1.5 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 21440 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 244-14 chr22 41142885 41143136 + 1.5 NA intron (NM_001362843, intron 10 of 29) intron (NM_001362843, intron 10 of 29) 50418 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 157.5-80 chr4 127712344 127712643 + 1.5 NA intron (NM_015693, intron 14 of 15) L2a|LINE|L2 -17907 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 153.5-27 chr12 55390044 55390240 + 1.5 NA Intergenic L1M5|LINE|L1 -10387 NM_001005518 403282 Hs.554553 NM_001005518 ENSG00000205328 OR6C65 - olfactory receptor family 6 subfamily C member 65 protein-coding 144.5-13 chr10 66117352 66117508 + 1.5 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 546005 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 275.5-12 chr18 59332766 59332996 + 1.5 NA intron (NM_005570, intron 11 of 12) L1M5|LINE|L1 -14232 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 170.5-18 chr11 46151073 46151271 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -20783 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 189.75-20 chr2 70000962 70001185 + 1.5 NA intron (NR_033872, intron 7 of 10) L1ME4a|LINE|L1 -38808 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 195.75-15 chr15 60231463 60231673 + 1.5 NA Intergenic Intergenic 166418 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 293.75-16 chr8 103619895 103620330 + 1.5 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -118202 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 207-44 chr5 102029538 102029731 + 1.5 NA Intergenic Intergenic 266650 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 247.25-18 chr3 27176375 27176624 + 1.5 NA intron (NM_001304384, intron 5 of 16) intron (NM_001304384, intron 5 of 16) 40024 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 217-36 chrX 22053071 22053258 + 1.5 NA intron (NM_001282754, intron 3 of 20) intron (NM_001282754, intron 3 of 20) 20839 NM_000444 5251 Hs.495834 NM_000444 ENSG00000102174 PHEX HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH phosphate regulating endopeptidase homolog X-linked protein-coding 323.25-11 chr5 18797251 18797598 + 1.5 NA Intergenic LTR40b|LTR|ERVL 990150 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 155.5-89 chr8 16721587 16721751 + 1.5 NA Intergenic AluSx1|SINE|Alu 280676 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 185.5-47 chr22 35333228 35333483 + 1.5 NA intron (NR_156428, intron 8 of 13) intron (NR_156428, intron 8 of 13) -2285 NR_037471 100500826 NR_037471 ENSG00000266320 MIR3909 mir-3909 microRNA 3909 ncRNA 226.5-16 chr14 60117771 60118109 + 1.5 NA intron (NM_001330177, intron 6 of 10) L1MB7|LINE|L1 26017 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 251-6 chr11 30036449 30036706 + 1.5 NA Intergenic Intergenic -19547 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 179.5-83 chr6 161471251 161471540 + 1.5 NA intron (NR_134595, intron 1 of 3) intron (NR_134595, intron 1 of 3) 418 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 236.5-19 chr16 84742600 84742837 + 1.5 NA intron (NM_005153, intron 3 of 13) intron (NM_005153, intron 3 of 13) 42718 NR_073577 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 283.5-3 chr1 176153237 176153516 + 1.5 NA intron (NM_001286644, intron 3 of 17) Charlie2b|DNA|hAT-Charlie 53868 NM_001001740 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 144.25-84 chrX 123713581 123713719 + 1.5 NA intron (NM_001081550, intron 1 of 38) AluJb|SINE|Alu 19402 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 323-11 chr22 28065941 28066232 + 1.5 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -145474 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 167-63 chr7 132995839 132995989 + 1.5 NA intron (NM_001317177, intron 3 of 8) MIRb|SINE|MIR 39001 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 183-47 chr3 120409601 120409842 + 1.5 NA intron (NM_007085, intron 5 of 10) intron (NM_007085, intron 5 of 10) -13992 NR_029584 406975 NR_029584 ENSG00000284121 MIR198 MIRN198|miR-198 microRNA 198 ncRNA 306-11 chr17 19707934 19708225 + 1.5 NA intron (NR_135625, intron 7 of 15) intron (NR_135625, intron 7 of 15) 8505 NM_001099646 146802 Hs.126830 NM_152908 ENSG00000180638 SLC47A2 MATE2|MATE2-B|MATE2-K|MATE2K solute carrier family 47 member 2 protein-coding 231.5-4 chr10 67252547 67252882 + 1.5 NA intron (NM_001127384, intron 5 of 17) Tigger7|DNA|TcMar-Tigger 150696 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 169.5-28 chr15 54639166 54639332 + 1.5 NA Intergenic L1MA8|LINE|L1 -417498 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 328.5-5 chr11 75249090 75249383 + 1.5 NA Intergenic AluJb|SINE|Alu 8462 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 306.5-7 chr3 47732780 47733166 + 1.5 NA intron (NM_003074, intron 5 of 27) AluSg7|SINE|Alu 48920 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 246.5-5 chr15 56835284 56835629 + 1.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -82634 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 157.5-89 chr6 90816633 90816761 + 1.5 NA Intergenic Intergenic -229625 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 263-6 chr11 39872624 39872943 + 1.5 NA Intergenic Intergenic 420347 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 206.5 chr1 116029942 116030121 + 1.5 NA intron (NM_018420, intron 5 of 11) intron (NM_018420, intron 5 of 11) -52755 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 238-37 chr8 83197988 83198146 + 1.5 NA Intergenic Intergenic -205691 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 350.5 chr1 177816442 177816798 + 1.5 NA Intergenic Intergenic 116096 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 163-51 chr8 77337163 77337326 + 1.5 NA Intergenic Charlie25|DNA|hAT-Charlie -113453 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 433.25 chr18 8460185 8460563 + 1.5 NA Intergenic Intergenic -93340 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 245-27 chr4 98869129 98869311 + 1.5 NA Intergenic MER112|DNA|hAT-Charlie 59913 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 232.75-8 chr17 62806011 62806380 + 1.5 NA intron (NM_001288780, intron 1 of 10) intron (NM_001288780, intron 1 of 10) 445 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 168.5-7 chr10 1494529 1494667 + 1.5 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -32032 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 179-4 chr10 11085148 11085344 + 1.5 NA intron (NR_046108, intron 4 of 6) MIR3|SINE|MIR 20242 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 233-23 chr4 74008619 74008906 + 1.5 NA Intergenic L1ME2|LINE|L1 -10085 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 181.25-57 chr9 72974837 72974971 + 1.5 NA Intergenic MIR|SINE|MIR -21851 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 387-4 chr14 83381309 83381770 + 1.5 NA Intergenic L2a|LINE|L2 738907 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 113.25-97 chr5 106705679 106705819 + 1.5 NA Intergenic Intergenic 305265 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 132.5-3 chr1 176477823 176477919 + 1.5 NA intron (NM_021936, intron 1 of 4) MER112|DNA|hAT-Charlie 14696 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 121-30 chr18 73316414 73316577 + 1.5 NA Intergenic Intergenic -8446 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 169.5-41 chr2 60835974 60836192 + 1.5 NA Intergenic Intergenic 45231 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 403.25-2 chr13 34434686 34435066 + 1.5 NA TTS (NR_047036) TTS (NR_047036) 86833 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 221.5-10 chr14 47847051 47847281 + 1.5 NA Intergenic L1PA10|LINE|L1 -52152 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 159.75-2 chr1 51763731 51763927 + 1.5 NA intron (NM_148906, intron 10 of 22) intron (NM_148906, intron 10 of 22) 33979 NM_148905 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 220.5-6 chr10 25595326 25595606 + 1.5 NA intron (NM_020752, intron 9 of 10) L1MB7|LINE|L1 -56246 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 149.25-7 chr10 95601129 95601261 + 1.5 NA Intergenic Intergenic -39824 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 215.5-20 chr15 73764268 73764483 + 1.5 NA Intergenic Intergenic -3711 NR_120353 101929221 NR_120352 INSYN1-AS1 C15orf59-AS1 INSYN1 antisense RNA 1 ncRNA 179.5-22 chr12 13107493 13107693 + 1.5 NA Intergenic L1PA17|LINE|L1 -3926 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 153-10 chr15 81935798 81935937 + 1.5 NA Intergenic Intergenic 110151 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 155.5-16 chr10 66371156 66371318 + 1.5 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -554799 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 214.5-16 chr16 61439786 61440028 + 1.5 NA Intergenic Intergenic -384141 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 325.75-8 chr6 53838947 53839254 + 1.5 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 44095 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 236.25-2 chr1 76032344 76032513 + 1.5 NA Intergenic Intergenic 21104 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 255-22 chr5 145343992 145344349 + 1.5 NA Intergenic L1M2|LINE|L1 491172 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 131.5-25 chr12 126428140 126428250 + 1.5 NA intron (NR_146291, intron 2 of 2) intron (NR_146291, intron 2 of 2) 2049 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 233-10 chr11 16304343 16304644 + 1.5 NA intron (NM_033326, intron 3 of 15) MLT1A0|LTR|ERVL-MaLR 52053 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 258.75-14 chr16 7578414 7578617 + 1.5 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 245670 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 226 chr1 29423301 29423492 + 1.5 NA Intergenic L1MA4A|LINE|L1 -73282 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 271.75-14 chr8 120795941 120796162 + 1.5 NA intron (NM_021021, intron 1 of 6) MSTA|LTR|ERVL-MaLR 15995 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 190.75-6 chr10 17147903 17148125 + 1.5 NA 3' UTR (NM_001321007, exon 12 of 12) 3' UTR (NM_001321007, exon 12 of 12) -18197 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 174.25-46 chr5 86432729 86432915 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie 150378 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 254-12 chr4 94674757 94675023 + 1.5 NA Intergenic Intergenic 82643 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 354.5 chr10 50578220 50578609 + 1.5 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 45542 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 137.25-36 chr16 52382514 52382681 + 1.5 NA Intergenic Intergenic 124033 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 148.5-74 chr4 117281907 117282037 + 1.5 NA Intergenic Intergenic 78667 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 170.75-53 chr5 12998967 12999094 + 1.5 NA intron (NR_147005, intron 2 of 4) MER20|DNA|hAT-Charlie 33856 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 264-5 chr11 126675957 126676149 + 1.5 NA intron (NR_120533, intron 1 of 1) L2|LINE|L2 19967 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 116-75 chr8 121006811 121006907 + 1.5 NA Intergenic Intergenic -194813 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 194-34 chr6 141853210 141853375 + 1.5 NA Intergenic LTR16A|LTR|ERVL 235507 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 149-57 chr8 116652619 116652816 + 1.5 NA intron (NR_136278, intron 1 of 1) L1MC4|LINE|L1 617 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 168.75-4 chr11 29992090 29992306 + 1.5 NA Intergenic Intergenic -9805 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 250.25-12 chr21 27195174 27195598 + 1.5 NA Intergenic L1PREC2|LINE|L1 -228298 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 167.5-22 chr14 60929527 60929795 + 1.5 NA intron (NM_001177963, intron 6 of 6) OldhAT1|DNA|hAT-Ac 51418 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 129.75-80 chr8 88701900 88702088 + 1.5 NA Intergenic Intergenic -374511 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 162.5-74 chr5 114454849 114455006 + 1.5 NA intron (NR_130785, intron 11 of 12) L1MEc|LINE|L1 21416 NR_103458 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 199.5-46 chr5 164090424 164090701 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR 376840 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 215.25-4 chr1 216311848 216312114 + 1.5 NA intron (NM_206933, intron 9 of 71) L1MCa|LINE|L1 111415 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 256.75-14 chr9 106595141 106595472 + 1.5 NA Intergenic L1PREC2|LINE|L1 -5622 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 339.5-6 chr2 116209645 116209976 + 1.5 NA Intergenic L1ME1|LINE|L1 865995 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 140.5-21 chr13 51295990 51296146 + 1.5 NA Intergenic Intergenic -44964 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 379.25-2 chr2 26646249 26646624 + 1.5 NA Intergenic L1MB7|LINE|L1 -5070 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 197.5-44 chr22 26104653 26104913 + 1.5 NA Intergenic Intergenic -64679 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 132.75-64 chr3 122063066 122063190 + 1.5 NA intron (NM_001206925, intron 1 of 5) intron (NM_001206925, intron 1 of 5) 7766 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 481 chr10 41902936 41903840 + 1.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 464657 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 194.75-36 chr5 44887689 44887995 + 1.5 NA Intergenic Intergenic 78895 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 214.5-41 chr4 33676049 33676308 + 1.5 NA Intergenic L1ME2|LINE|L1 363715 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 117.75-32 chr18 4301075 4301190 + 1.5 NA intron (NM_001242761, intron 1 of 11) L1MA7|LINE|L1 36530 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 188.75-57 chr9 110926400 110926668 + 1.5 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 110246 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 338.5 chr1 107993624 107994033 + 1.5 NA intron (NR_046653, intron 2 of 2) MIR|SINE|MIR -28648 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 142-17 chr13 79245380 79245586 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie 160738 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 250.5-33 chr8 64522782 64523124 + 1.5 NA Intergenic MIR|SINE|MIR 54310 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 198.75-21 chr2 58081201 58081421 + 1.5 NA intron (NM_001288836, intron 3 of 13) Kanga1|DNA|TcMar-Tc2 34599 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 288.75-4 chr15 59570888 59571108 + 1.5 NA Intergenic AluSx1|SINE|Alu -40785 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 291-15 chr8 84027799 84028085 + 1.5 NA Intergenic Intergenic -154845 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 166-8 chr10 100965353 100965484 + 1.5 NA TTS (NM_018121) TTS (NM_018121) -7111 NM_017893 57715 Hs.591923 NM_017893 ENSG00000095539 SEMA4G - semaphorin 4G protein-coding 176-43 chr8 81402646 81402878 + 1.5 NA Intergenic Intergenic 44677 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 289-4 chr11 25602024 25602375 + 1.5 NA Intergenic L2a|LINE|L2 -586924 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 145-19 chr14 84964785 84964892 + 1.5 NA Intergenic Intergenic -307094 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 280.75-11 chr4 114327523 114327808 + 1.5 NA Intergenic Intergenic -270737 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 195.75-50 chr6 92185145 92185367 + 1.5 NA Intergenic Intergenic -494828 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 205.5-32 chr22 25170957 25171234 + 1.5 NA intron (NM_001145206, intron 5 of 10) intron (NM_001145206, intron 5 of 10) -28763 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 187-62 chr8 120891363 120891607 + 1.5 NA Intergenic Intergenic -79439 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 122.5-64 chr4 36142937 36143028 + 1.5 NA intron (NR_146894, intron 19 of 32) L2b|LINE|L2 100957 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 155.75-18 chr16 59660255 59660396 + 1.5 NA Intergenic Intergenic 94866 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 222.5-6 chr10 77188568 77188856 + 1.5 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 47881 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 114.75-14 chr10 68759364 68759496 + 1.5 NA intron (NR_104262, intron 14 of 23) intron (NR_104262, intron 14 of 23) 4258 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 136-40 chr2 227460587 227460717 + 1.5 NA Intergenic Intergenic -11480 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 120.75-13 chr11 16703407 16703543 + 1.5 NA intron (NM_001367872, intron 2 of 16) MER131|DNA?|DNA? 35002 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 256.25-5 chr14 45470958 45471201 + 1.5 NA Intergenic Intergenic -217877 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 144.5-78 chr4 42790207 42790335 + 1.5 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -102995 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 132-85 chr9 120119799 120119943 + 1.5 NA Intergenic Intergenic 125179 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 184.5-39 chr2 21077852 21078002 + 1.5 NA Intergenic Intergenic -33854 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 259-11 chr12 46368221 46368422 + 1.5 NA intron (NM_001307936, intron 3 of 14) intron (NM_001307936, intron 3 of 14) 4452 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 146.5-95 chr9 27207806 27207992 + 1.5 NA intron (NM_001290077, intron 14 of 21) intron (NM_001290077, intron 14 of 21) 74894 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 199.5-13 chr13 38426437 38426632 + 1.5 NA Intergenic MER57A-int|LTR|ERV1 76683 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 260-34 chr8 71107123 71107378 + 1.5 NA Intergenic Intergenic 249456 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 179.5-9 chr1 100470771 100471094 + 1.5 NA intron (NM_001319212, intron 9 of 13) L1ME2|LINE|L1 -67207 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 183-45 chr3 89326762 89327033 + 1.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 219276 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 215.5-6 chr10 59968228 59968448 + 1.5 NA Intergenic Intergenic -7425 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 211.5-56 chr9 11350678 11350889 + 1.5 NA Intergenic Intergenic 737577 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 250.25-22 chr8 131668126 131668600 + 1.5 NA Intergenic L2c|LINE|L2 -235730 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 411.5 chr5 174281187 174281542 + 1.5 NA Intergenic Intergenic -54990 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 148.25-44 chr20 47332442 47332585 + 1.5 NA intron (NM_001281774, intron 3 of 23) AluJo|SINE|Alu 14011 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 125-48 chr19 34057757 34057895 + 1.5 NA Intergenic L1MC4|LINE|L1 -114678 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 219.5-7 chr10 118561941 118562233 + 1.5 NA Intergenic L1MC4|LINE|L1 33561 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 155.25-35 chr2 158677256 158677378 + 1.5 NA intron (NM_001304970, intron 20 of 21) intron (NM_001304970, intron 20 of 21) 57685 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 155.25-62 chr6 44339311 44339467 + 1.5 NA Intergenic Intergenic -3271 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 185.5-24 chr13 113214068 113214256 + 1.5 NA intron (NM_001008895, intron 2 of 19) intron (NM_001008895, intron 2 of 19) 4549 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 230 chr10 43852509 43852786 + 1.5 NA Intergenic Intergenic -6764 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 131-18 chr13 99741547 99741717 + 1.5 NA intron (NR_120421, intron 4 of 4) AluYd8|SINE|Alu -12631 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 200 chr1 108690796 108691039 + 1.5 NA Intergenic MIRb|SINE|MIR -1393 NM_001349768 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 204.5-47 chr5 56214197 56214364 + 1.5 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 19050 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 174-20 chr17 40550548 40550687 + 1.5 NA Intergenic Intergenic 9777 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 192.75-17 chr2 135104442 135104645 + 1.5 NA intron (NM_001172435, intron 5 of 24) L1M4a1|LINE|L1 -32085 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 187-30 chr2 212487115 212487327 + 1.5 NA intron (NM_001042599, intron 1 of 26) OldhAT1|DNA|hAT-Ac 51407 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 138.5-14 chr10 25398566 25398719 + 1.5 NA intron (NM_020752, intron 3 of 10) intron (NM_020752, intron 3 of 10) -222366 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 278-31 chr8 115040615 115040923 + 1.5 NA Intergenic AluSz|SINE|Alu 627244 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 183-15 chr11 86689593 86689767 + 1.5 NA Intergenic Intergenic -17044 NM_001161586 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 446 chr15 26952474 26952924 + 1.5 NA Intergenic Intergenic -18482 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 113.5-115 chr8 50345801 50345897 + 1.5 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 181718 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 124.25-84 chr9 6347580 6347786 + 1.5 NA Intergenic L1MA4|LINE|L1 19308 NM_033516 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 177-26 chr2 74763727 74763923 + 1.5 NA Intergenic Intergenic -68830 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 282.5-12 chr2 47227013 47227322 + 1.5 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -50231 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 342.5-6 chr3 98984155 98984503 + 1.5 NA Intergenic Intergenic -82634 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 116.75-10 chr10 67132176 67132386 + 1.5 NA intron (NM_001127384, intron 7 of 17) L2|LINE|L2 120015 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 280.5-2 chr1 225458379 225458661 + 1.5 NA Intergenic L1MB7|LINE|L1 -29665 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 211.5-38 chr5 26272049 26272232 + 1.5 NA Intergenic L1ME3|LINE|L1 766446 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 226.5-27 chr2 38188911 38189220 + 1.5 NA Intergenic MIR3|SINE|MIR 57960 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 197-48 chr8 91613080 91613288 + 1.5 NA Intergenic Intergenic 363865 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 124.5-72 chr3 168156553 168156685 + 1.5 NA Intergenic Intergenic -60695 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 316-21 chr9 37672030 37672297 + 1.5 NA intron (NM_001371223, intron 1 of 15) L1MB8|LINE|L1 4154 NM_001371223 214-15 chr13 32374174 32374408 + 1.5 NA intron (NM_000059, intron 20 of 26) THE1D-int|LTR|ERVL-MaLR 53839 NM_001353630 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 186.5-40 chr3 329195 329450 + 1.5 NA intron (NM_001253388, intron 3 of 24) intron (NM_001253388, intron 3 of 24) 9639 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 190.25-14 chr11 5859620 5859904 + 1.5 NA Intergenic Intergenic -2060 NM_001005168 390079 Hs.553738 NM_001005168 ENSG00000183269 OR52E8 OR11-54 olfactory receptor family 52 subfamily E member 8 protein-coding 220-24 chr4 55223647 55223836 + 1.5 NA Intergenic Intergenic -98146 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 161-41 chr2 99890391 99890620 + 1.5 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 215078 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 241-25 chr3 108109518 108109835 + 1.5 NA Intergenic Intergenic -15388 NR_110030 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 120.75-29 chr14 50373693 50373781 + 1.5 NA intron (NM_001282236, intron 2 of 8) L1MC3|LINE|L1 23144 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 384.25 chr10 24956363 24956776 + 1.5 NA Intergenic L1MA6|LINE|L1 -3963 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 192.5-40 chr3 55782726 55783019 + 1.5 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 69722 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 223.5-27 chr14 72913925 72914162 + 1.5 NA Intergenic L1MC4|LINE|L1 -12421 NM_001163509 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 152-9 chr10 4259028 4259211 + 1.5 NA Intergenic AluJr4|SINE|Alu -15207 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 250.5-12 chr15 42079866 42080116 + 1.5 NA intron (NM_178034, intron 12 of 19) MER33|DNA|hAT-Charlie 14571 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 227.75-22 chr6 149711558 149711784 + 1.5 NA intron (NM_001350340, intron 1 of 8) MLT1J2-int|LTR|ERVL-MaLR 4754 NR_073033 9113 Hs.549084 NM_004690 ENSG00000131023 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 425.25-3 chr8 136347945 136348365 + 1.5 NA Intergenic Intergenic -182643 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 178.75-3 chr1 236140232 236140358 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -2244 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 242.75-21 chr8 47861168 47861508 + 1.5 NA intron (NM_001081640, intron 44 of 84) intron (NM_001081640, intron 44 of 84) 98798 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 160.25-59 chr8 122013702 122013924 + 1.5 NA Intergenic L1PA15|LINE|L1 -372373 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 321.5 chr1 67799267 67799643 + 1.5 NA intron (NM_018841, intron 1 of 3) intron (NM_018841, intron 1 of 3) -32833 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 135-45 chr21 30485137 30485306 + 1.5 NA Intergenic MLT2B1|LTR|ERVL 2215 NM_181608 337969 Hs.553692 NM_181608 ENSG00000186965 KRTAP19-2 KAP19.2 keratin associated protein 19-2 protein-coding 180-12 chr10 90215994 90216127 + 1.5 NA Intergenic Intergenic -258687 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 219.5-41 chr5 54658276 54658558 + 1.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 44907 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 243.75-8 chr16 48333726 48334125 + 1.5 NA intron (NM_031490, intron 11 of 14) L2a|LINE|L2 31962 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 183 chr1 30024128 30024280 + 1.5 NA intron (NR_110790, intron 4 of 6) L2b|LINE|L2 13408 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 253-2 chr1 46910596 46910844 + 1.5 NA Intergenic MER66B|LTR|ERV1 -10245 NR_002788 163720 Hs.591431 NR_002788 ENSG00000154198 CYP4Z2P - cytochrome P450 family 4 subfamily Z member 2, pseudogene pseudo 237.5-40 chr8 23339694 23340143 + 1.5 NA intron (NR_038323, intron 1 of 2) intron (NR_038323, intron 1 of 2) 3710 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 214.5-28 chr20 11656914 11657086 + 1.5 NA Intergenic L1MA9|LINE|L1 213715 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 251.5-19 chr21 15416799 15417088 + 1.5 NA Intergenic Intergenic -312991 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 268.5-26 chr5 43011213 43011557 + 1.5 NA Intergenic MER4B|LTR|ERV1 7426 NR_034086 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 119.5-121 chr8 79409569 79409695 + 1.5 NA Intergenic (TATTAA)n|Simple_repeat|Simple_repeat 77444 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 302-3 chr11 29464445 29464697 + 1.5 NA Intergenic L1M5|LINE|L1 -129842 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 179.5-91 chr8 74000097 74000277 + 1.5 NA intron (NM_001195797, intron 1 of 3) MSTD-int|LTR|ERVL-MaLR 8795 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 254-3 chr14 50299954 50300274 + 1.5 NA promoter-TSS (NR_039726) promoter-TSS (NR_039726) -168 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 199.25-7 chr10 64788034 64788282 + 1.5 NA Intergenic Intergenic -37370 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 173.25-17 chr14 75478899 75479070 + 1.5 NA Intergenic Intergenic -43485 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 256-22 chr5 31054760 31054941 + 1.5 NA Intergenic Intergenic -138836 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 291.5-13 chr4 123576336 123576620 + 1.5 NA Intergenic Intergenic -73513 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 170.25-12 chr12 50211777 50211995 + 1.5 NA intron (NM_016357, intron 4 of 10) intron (NM_016357, intron 4 of 10) -10353 NM_001243775 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 198-23 chr2 16474530 16474695 + 1.5 NA Intergenic Intergenic 191222 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 182.25 chr1 3325398 3325554 + 1.5 NA intron (NM_022114, intron 3 of 16) intron (NM_022114, intron 3 of 16) -129189 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 374-8 chr6 34645943 34646328 + 1.5 NA intron (NM_022758, intron 2 of 3) L2c|LINE|L2 -50019 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 155.5-59 chr2 126902080 126902266 + 1.5 NA TTS (NM_001322244) TTS (NM_001322244) 3283 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 187-48 chr5 33086731 33086939 + 1.5 NA Intergenic HAL1|LINE|L1 139392 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 301-12 chr15 101349457 101349689 + 1.5 NA intron (NM_138323, intron 13 of 13) intron (NM_138323, intron 13 of 13) 15136 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 135-58 chr5 28694000 28694156 + 1.5 NA Intergenic Intergenic -232792 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 305-22 chr7 110880283 110880521 + 1.5 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -210604 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 247.5-45 chr8 126760630 126760828 + 1.5 NA Intergenic MIRb|SINE|MIR -202251 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 238.5-29 chr4 167265216 167265460 + 1.5 NA Intergenic L1MC2|LINE|L1 -30748 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 343.25-3 chr5 2581767 2582164 + 1.5 NA Intergenic HERVIP10FH-int|LTR|ERV1 -130626 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 297-21 chr6 56350363 56350646 + 1.5 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 43624 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 222-13 chr14 63403018 63403201 + 1.5 NA intron (NR_104104, intron 4 of 12) HAL1|LINE|L1 -84174 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 195.25-38 chr5 110419474 110419619 + 1.5 NA TTS (NM_001039763) TTS (NM_001039763) 94369 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 203-32 chr6 141995339 141995512 + 1.5 NA Intergenic L1M2|LINE|L1 93374 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 151.5-89 chr9 26138434 26138553 + 1.5 NA Intergenic Intergenic 71818 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 167-50 chr4 95651913 95652110 + 1.5 NA Intergenic Intergenic -103038 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 179.5-5 chr1 51239633 51239769 + 1.5 NA intron (NM_014372, intron 1 of 2) AluJo|SINE|Alu 3428 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 285.5-24 chrX 38851482 38851810 + 1.5 NA Intergenic L1PA10|LINE|L1 -47763 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 313.75-4 chr20 63041444 63042039 + 1.5 NA intron (NR_033369, intron 1 of 5) AluSx|SINE|Alu 3730 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 117-74 chr6 110217747 110217837 + 1.5 NA exon (NM_015891, exon 10 of 15) exon (NM_015891, exon 10 of 15) 37365 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 203-25 chr4 58298737 58299007 + 1.5 NA Intergenic Intergenic 237456 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 261-44 chr7 53354733 53354970 + 1.5 NA Intergenic L1MEc|LINE|L1 319218 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 177-38 chr3 36397140 36397287 + 1.5 NA intron (NM_001292049, intron 1 of 8) intron (NM_001292049, intron 1 of 8) 16726 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 203-40 chr8 80131292 80131464 + 1.5 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 39743 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 228.75-42 chr8 143301198 143301515 + 1.5 NA Intergenic L1MEh|LINE|L1 9939 NM_030895 79943 Hs.512740 NM_030895 ENSG00000185730 ZNF696 - zinc finger protein 696 protein-coding 234-7 chr10 37990491 37990723 + 1.5 NA Intergenic Intergenic -13960 NM_001329652 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 268.75-15 chr2 74068571 74068955 + 1.5 NA intron (NM_001287491, intron 4 of 11) L1ME4b|LINE|L1 66071 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 280-7 chr11 122979818 122980123 + 1.5 NA intron (NM_001098169, intron 1 of 2) intron (NM_001098169, intron 1 of 2) 1864 NM_001098169 390259 Hs.449687 NM_001098169 ENSG00000188909 BSX BSX1 brain specific homeobox protein-coding 258.25-22 chr7 27975646 27975946 + 1.5 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -204661 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 234-29 chr3 162080559 162080895 + 1.5 NA Intergenic Intergenic 583919 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 160.25-17 chr13 94242535 94242697 + 1.5 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -54625 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 264.5-25 chr5 91661406 91661712 + 1.5 NA Intergenic Intergenic -278242 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 187.25-20 chr13 69240911 69241194 + 1.5 NA intron (NR_125752, intron 1 of 3) intron (NR_125752, intron 1 of 3) 18706 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 249.75-9 chr13 43547175 43547470 + 1.5 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 82155 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 276-8 chr18 49724133 49724334 + 1.5 NA Intergenic Intergenic 89300 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 155.25-13 chr12 64592351 64592505 + 1.5 NA Intergenic L1MC5a|LINE|L1 -18067 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 169-24 chr2 52389374 52389549 + 1.5 NA intron (NR_135239, intron 2 of 2) intron (NR_135239, intron 2 of 2) 18813 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 251.25-28 chr8 4876982 4877395 + 1.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 117726 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 194-4 chr1 203131414 203131648 + 1.5 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 3805 NM_001048230 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 159.75-27 chr2 106983144 106983264 + 1.5 NA Intergenic L1MC3|LINE|L1 -96095 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 319.5 chr1 86045913 86046239 + 1.5 NA intron (NM_152890, intron 12 of 59) MIRc|SINE|MIR 110395 NR_146345 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 133-59 chr7 37624716 37624912 + 1.5 NA Intergenic L1M5|LINE|L1 -58952 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 295.5-20 chr5 4218906 4219277 + 1.5 NA Intergenic L1ME3A|LINE|L1 -554390 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 256.5-6 chr10 103203631 103204015 + 1.5 NA Intergenic Intergenic -10517 NM_012229 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 149-29 chr20 39719385 39719571 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -284983 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 235.5-47 chr5 98700434 98700635 + 1.5 NA Intergenic L1PB1|LINE|L1 -68098 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 184.25-22 chr2 103669784 103670109 + 1.5 NA Intergenic Intergenic -685517 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 231-35 chr7 14532486 14532809 + 1.5 NA intron (NM_001350717, intron 19 of 24) L1M4a2|LINE|L1 308803 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 258.5-12 chr4 33317658 33317886 + 1.5 NA Intergenic Intergenic 722121 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 247.5-13 chr19 40644094 40644349 + 1.5 NA Intergenic AluJr4|SINE|Alu 42852 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 262.25-2 chr10 82157496 82157761 + 1.5 NA intron (NR_163251, intron 2 of 9) intron (NR_163251, intron 2 of 9) 75292 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 281-21 chr6 71338097 71338298 + 1.5 NA Intergenic Intergenic 38834 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 245.5-4 chr10 70827020 70827238 + 1.5 NA intron (NM_003901, intron 2 of 14) L1ME3B|LINE|L1 11181 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 187-24 chr2 43257304 43257459 + 1.5 NA intron (NM_001083953, intron 36 of 37) intron (NM_001083953, intron 36 of 37) 30170 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 162-26 chr20 2589409 2589645 + 1.5 NA intron (NM_080751, intron 7 of 19) L1MEg|LINE|L1 52920 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 301.5-4 chr10 43669485 43669994 + 1.5 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -20858 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 296.75-7 chr3 103923347 103923676 + 1.5 NA Intergenic Intergenic -399395 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 193.5-30 chr2 171016742 171016924 + 1.5 NA intron (NM_001136555, intron 10 of 18) intron (NM_001136555, intron 10 of 18) 50140 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 309.25-14 chr8 111123454 111123876 + 1.5 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -96232 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 187-12 chr16 50198738 50198928 + 1.5 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 45352 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 171.25-34 chr3 90579056 90579208 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 1471511 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 242-7 chr11 23360347 23360563 + 1.5 NA Intergenic LTR53|LTR|ERVL 58735 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 148.5-78 chr5 11490405 11490581 + 1.5 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 98424 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 261.5-22 chr5 6459434 6459804 + 1.5 NA intron (NM_001145161, intron 1 of 1) Charlie4a|DNA|hAT-Charlie 10760 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 129-53 chr5 5444276 5444435 + 1.5 NA intron (NM_015325, intron 7 of 18) intron (NM_015325, intron 7 of 18) 21678 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 135-12 chr10 77261271 77261436 + 1.5 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 89408 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 180.75-25 chr14 67364881 67365026 + 1.5 NA exon (NM_004094, exon 2 of 8) exon (NM_004094, exon 2 of 8) 4625 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 194.75-54 chr9 37767689 37767960 + 1.5 NA intron (NR_104612, intron 4 of 8) intron (NR_104612, intron 4 of 8) 14019 NM_144964 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 210.25-52 chrX 51487031 51487444 + 1.5 NA Intergenic L1MA9|LINE|L1 9355 NM_018159 55190 Hs.200016 NM_018159 ENSG00000196368 NUDT11 APS1|ASP1|DIPP3b|DIPP3beta|hDIPP3beta nudix hydrolase 11 protein-coding 231.5-11 chr15 26814100 26814370 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -40472 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 195-8 chr10 90860007 90860232 + 1.5 NA Intergenic Intergenic -2080 NM_019859 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 274-12 chr19 49941818 49942037 + 1.5 NA Intergenic L1M2|LINE|L1 8863 NR_039906 100616483 NR_039906 ENSG00000283842 MIR4751 - microRNA 4751 ncRNA 176.25-12 chr11 116664345 116664559 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 25030 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 481.75 chr14 60710973 60711486 + 1.5 NA 3' UTR (NM_017420, exon 3 of 3) 3' UTR (NM_017420, exon 3 of 3) 13122 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 257.75-19 chr5 38108790 38109019 + 1.5 NA intron (NR_147009, intron 2 of 2) L1M5|LINE|L1 -39576 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 276.5-8 chr2 199036732 199036990 + 1.5 NA Intergenic Intergenic 421078 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 218-37 chr5 31297256 31297455 + 1.5 NA exon (NM_004932, exon 4 of 12) exon (NM_004932, exon 4 of 12) 103669 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 143.75-55 chr21 20177187 20177291 + 1.5 NA Intergenic Intergenic 81446 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 212.5-45 chr5 33226074 33226287 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -3555 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 183-32 chr2 120343640 120343820 + 1.5 NA Intergenic CpG -2406 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin subunit beta B protein-coding 177.75-34 chr3 4082820 4082975 + 1.5 NA Intergenic Intergenic -220407 NM_001276325 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 204.25-33 chr22 26832199 26832436 + 1.5 NA Intergenic Intergenic -27894 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 204-16 chr16 74281625 74281810 + 1.5 NA Intergenic Intergenic -15097 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 226.5-55 chr9 126960553 126960788 + 1.5 NA intron (NM_001366400, intron 1 of 18) intron (NM_001366400, intron 1 of 18) -1555 NM_001190728 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 121.5-76 chr21 24069494 24069610 + 1.5 NA Intergenic MIRc|SINE|MIR 251825 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 137.25-33 chr15 74183989 74184129 + 1.5 NA intron (NM_001142618, intron 13 of 18) intron (NM_001142618, intron 13 of 18) 9512 NM_201526 3671 Hs.699822 NM_005545 ENSG00000129009 ISLR HsT17563|Meflin immunoglobulin superfamily containing leucine rich repeat protein-coding 114-81 chr6 166765943 166766081 + 1.5 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 96513 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 259.5-28 chr8 115876824 115877066 + 1.5 NA Intergenic Intergenic -207970 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 117.5-59 chr20 60711835 60711995 + 1.5 NA Intergenic L1MC3|LINE|L1 147353 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 257.75-13 chr2 66030333 66030713 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR 327805 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 375.75-9 chr3 94256099 94256532 + 1.5 NA Intergenic LTR40c|LTR|ERVL 193254 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 280.5-12 chr19 49487684 49488049 + 1.5 NA intron (NM_012423, intron 1 of 7) intron (NM_012423, intron 1 of 7) 258 NM_012423 23521 Hs.523185 NM_012423 ENSG00000142541 RPL13A L13A|TSTA1 ribosomal protein L13a protein-coding 467-3 chr5 26604633 26605033 + 1.5 NA Intergenic Intergenic 433753 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 210-31 chr6 75698956 75699209 + 1.5 NA intron (NM_001100409, intron 17 of 22) intron (NM_001100409, intron 17 of 22) -50157 NM_001368136 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 192-47 chr6 153897671 153897876 + 1.5 NA Intergenic Intergenic -112723 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 347.5-15 chr6 54287857 54288331 + 1.5 NA Intergenic LTR81|LTR|Gypsy -20347 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 279.75-7 chr13 94417251 94417464 + 1.5 NA Intergenic MER34A|LTR|ERV1 62325 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 139.5-58 chr3 57952429 57952611 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -55902 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 330.5-3 chr12 65813718 65814090 + 1.5 NA intron (NR_026825, intron 1 of 1) L1MC1|LINE|L1 -10556 NM_003484 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 289-17 chr8 10168329 10168565 + 1.5 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 72796 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 197-13 chr14 67680005 67680282 + 1.5 NA intron (NM_016026, intron 6 of 6) MER5A|DNA|hAT-Charlie -5511 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 338.5-12 chr8 120400029 120400474 + 1.5 NA intron (NM_014078, intron 6 of 6) L1PA11|LINE|L1 44899 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 240.25-12 chr2 190786846 190787166 + 1.5 NA Intergenic Intergenic -93815 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 132-56 chr4 92233260 92233427 + 1.5 NA Intergenic Intergenic 43959 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 188-50 chr9 35885783 35885944 + 1.5 NA Intergenic L1M5|LINE|L1 -15462 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 307-11 chr5 7920170 7920446 + 1.5 NA Intergenic L1ME1|LINE|L1 51160 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 247.75-5 chr14 73503408 73503630 + 1.5 NA intron (NM_001220484, intron 10 of 17) intron (NM_001220484, intron 10 of 17) 12586 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 257.5-27 chr8 51105849 51106257 + 1.5 NA Intergenic Intergenic 703392 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 231.75-31 chr8 144339396 144339651 + 1.5 NA Intergenic Intergenic -3041 NM_031309 83482 Hs.31746 NM_031309 ENSG00000261678 SCRT1 SCRT|ZNF898 scratch family transcriptional repressor 1 protein-coding 295.25-6 chr12 91885744 91886080 + 1.5 NA Intergenic Intergenic 255801 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 159.75-16 chr14 38793771 38793960 + 1.5 NA intron (NR_039982, intron 4 of 4) LTR16B2|LTR|ERVL -88731 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 150-16 chr10 129573005 129573191 + 1.5 NA intron (NM_002412, intron 2 of 4) L1M|LINE|L1 105857 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 237-20 chr2 148051995 148052185 + 1.5 NA intron (NM_018328, intron 2 of 14) L1MB7|LINE|L1 -30486 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 212.5-55 chr8 138524574 138524823 + 1.5 NA Intergenic Intergenic -26968 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 118.25-111 chr8 104179145 104179281 + 1.5 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -44122 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 217.75-4 chr10 74627955 74628181 + 1.5 NA intron (NM_001369124, intron 8 of 9) intron (NM_001369124, intron 8 of 9) -98744 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 325-9 chr4 134603759 134604004 + 1.5 NA Intergenic L1MEg|LINE|L1 180013 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 203.25-4 chr10 28378755 28378965 + 1.5 NA Intergenic Intergenic -75796 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 314-3 chr11 124036483 124036737 + 1.5 NA Intergenic Intergenic 2391 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 221-23 chr2 187233167 187233358 + 1.5 NA Intergenic Intergenic 214990 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 363.5-9 chr8 108892608 108892946 + 1.5 NA Intergenic Intergenic -105183 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 156.25-23 chr15 51244565 51244747 + 1.5 NA promoter-TSS (NM_001347254) promoter-TSS (NM_001347254) -741 NM_001347254 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 133-32 chr18 36109200 36109291 + 1.5 NA 3' UTR (NM_012319, exon 10 of 10) 3' UTR (NM_012319, exon 10 of 10) 20095 NM_012319 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 253-17 chr3 21931683 21931936 + 1.5 NA Intergenic L1MB7|LINE|L1 -25330 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 184.75-18 chr12 128224064 128224354 + 1.5 NA Intergenic LTR51|LTR|ERV1 -43194 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 178.5-81 chr8 52873527 52873699 + 1.5 NA Intergenic LTR39|LTR|ERV1 -66295 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 251-23 chr4 126400126 126400465 + 1.5 NA Intergenic X9_LINE|LINE|L1 893036 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 190.5-17 chr11 108492344 108492524 + 1.5 NA intron (NM_001363502, intron 1 of 5) intron (NM_001363502, intron 1 of 5) 5950 NM_001363502 143888 Hs.83286 NM_153705 ENSG00000178202 POGLUT3 KDELC2 protein O-glucosyltransferase 3 protein-coding 114-14 chr10 90193427 90193537 + 1.5 NA Intergenic Intergenic -236109 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 229.5-34 chr3 122336647 122336828 + 1.5 NA intron (NM_005213, intron 1 of 2) L1MC4a|LINE|L1 11489 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 212.5-31 chr20 57958369 57958605 + 1.5 NA Intergenic Intergenic -45417 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 165.75-33 chr2 68258420 68258712 + 1.5 NA Intergenic Intergenic -6034 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 145-12 chr12 52766005 52766128 + 1.5 NA Intergenic Intergenic 11279 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 312.5-5 chr2 64502607 64502875 + 1.5 NA Intergenic AluY|SINE|Alu 16388 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 147.5-83 chr8 121182456 121182577 + 1.5 NA Intergenic Intergenic -370470 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 197-29 chr2 174119623 174119861 + 1.5 NA intron (NM_001011708, intron 6 of 9) intron (NM_001011708, intron 6 of 9) 94462 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 232-13 chr2 72652789 72653052 + 1.5 NA intron (NR_135774, intron 6 of 19) AluJb|SINE|Alu 173113 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 209.75-32 chr5 83688238 83688531 + 1.5 NA intron (NM_001884, intron 1 of 4) intron (NM_001884, intron 1 of 4) 32471 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 190.25-11 chr10 95241486 95241779 + 1.5 NA intron (NM_020992, intron 5 of 6) intron (NM_020992, intron 5 of 6) 47432 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 271-8 chr17 13064628 13065042 + 1.5 NA Intergenic Intergenic -46771 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 173-9 chr11 45963017 45963139 + 1.5 NA intron (NR_147890, intron 9 of 18) L1ME4a|LINE|L1 40422 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 225-24 chr4 97053386 97053627 + 1.5 NA Intergenic MIR|SINE|MIR -313420 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 326-10 chr19 31187616 31187931 + 1.5 NA intron (NR_147209, intron 2 of 4) L1ME2z|LINE|L1 20263 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 238.75-10 chr2 183109779 183110153 + 1.5 NA Intergenic L1MD1|LINE|L1 -7524 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 243.75-3 chr10 61953553 61953785 + 1.5 NA intron (NM_032199, intron 3 of 9) MIRb|SINE|MIR 51970 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 276.75-2 chr1 200481156 200481407 + 1.5 NA Intergenic Intergenic -71245 NM_012482 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 214.5-59 chr8 121835171 121835396 + 1.5 NA Intergenic LTR82A|LTR|ERVL -193843 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 120.5-69 chr3 156799117 156799221 + 1.5 NA intron (NR_038387, intron 1 of 2) L2a|LINE|L2 12852 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 258.5-16 chr6 20764045 20764326 + 1.5 NA intron (NM_017774, intron 7 of 15) intron (NM_017774, intron 7 of 15) 229728 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 150-56 chr4 65914016 65914148 + 1.5 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -243587 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 274.75-20 chr8 122170738 122171060 + 1.5 NA Intergenic Intergenic 397745 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 269.25-14 chr3 37777107 37777379 + 1.5 NA intron (NR_110531, intron 3 of 3) intron (NR_110531, intron 3 of 3) 84537 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 234-32 chr4 42001873 42002113 + 1.5 NA intron (NM_006345, intron 2 of 17) L1MEd|LINE|L1 11463 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 383.25-2 chr12 13763624 13763989 + 1.5 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 216550 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 246-14 chr2 99889338 99889551 + 1.5 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 216139 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 293.75-10 chr22 37059071 37059385 + 1.5 NA intron (NM_024681, intron 4 of 7) intron (NM_024681, intron 4 of 7) 7492 NM_001282686 79734 Hs.517597 NM_024681 ENSG00000100379 KCTD17 - potassium channel tetramerization domain containing 17 protein-coding 247.75-6 chr15 97288919 97289243 + 1.5 NA Intergenic Intergenic 232730 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 240.5-33 chr3 83385544 83385726 + 1.5 NA Intergenic Intergenic 1399493 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 133-7 chr10 121008202 121008311 + 1.5 NA Intergenic MER63D|DNA|hAT-Blackjack 156894 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 185.25-44 chr5 87536688 87536830 + 1.5 NA Intergenic Intergenic -123726 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 135-81 chrX 70710104 70710257 + 1.5 NA intron (NM_001003811, intron 14 of 30) intron (NM_001003811, intron 14 of 30) 136115 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 189-47 chr7 33124884 33125054 + 1.5 NA Intergenic LTR57-int|LTR|ERVL -4316 NR_145412 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 244.5-15 chr2 96943766 96944039 + 1.5 NA intron (NM_001122646, intron 8 of 16) intron (NM_001122646, intron 8 of 16) 24796 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 220.5-37 chr5 172490861 172491167 + 1.5 NA Intergenic MIRb|SINE|MIR -36489 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 218.25-36 chr5 25709577 25709860 + 1.5 NA Intergenic Intergenic 518765 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 270.75-23 chr8 123777333 123777554 + 1.5 NA intron (NM_144963, intron 4 of 23) intron (NM_144963, intron 4 of 23) 9004 NM_144963 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 310.5 chr15 87359911 87360302 + 1.5 NA Intergenic L2a|LINE|L2 -216823 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 261.5-33 chr9 106413200 106413455 + 1.5 NA Intergenic Intergenic -187601 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 269.5-13 chr13 108567852 108568174 + 1.5 NA Intergenic L1MB7|LINE|L1 -27892 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 220-36 chr8 134395300 134395526 + 1.5 NA Intergenic Intergenic -202658 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 144.5-57 chr2 96448296 96448500 + 1.5 NA Intergenic LTR24|LTR|ERV1 56959 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 164.25-15 chr12 9747753 9747919 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 13065 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 318.75 chr1 35560384 35560744 + 1.5 NA exon (NM_001014839, exon 4 of 8) exon (NM_001014839, exon 4 of 8) 2765 NM_014284 23154 Hs.121870 NM_014284 ENSG00000020129 NCDN - neurochondrin protein-coding 216.75-41 chr7 134052894 134053155 + 1.5 NA intron (NM_021807, intron 17 of 17) intron (NM_021807, intron 17 of 17) -74316 NM_001365701 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 400.5-7 chr8 83289298 83289800 + 1.5 NA Intergenic Intergenic -114209 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 264.5-13 chr15 100428834 100429126 + 1.5 NA intron (NR_120374, intron 4 of 4) L2c|LINE|L2 56041 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 151.75-51 chr22 28506302 28506411 + 1.5 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 46487 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 264-4 chr11 95036713 95036969 + 1.5 NA Intergenic AluYk11|SINE|Alu 11583 NM_001161630 390245 Hs.714692 NM_001161630 ENSG00000235268 KDM4E JMJD2E|KDM4DL|KDM5E lysine demethylase 4E protein-coding 220-25 chr5 11792966 11793150 + 1.5 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 111388 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 280.5-23 chr6 76716954 76717224 + 1.5 NA Intergenic L2a|LINE|L2 -123466 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 209.25-30 chr4 92751116 92751301 + 1.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 446809 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 264-26 chr8 4329000 4329289 + 1.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 665770 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 145-18 chr14 80770304 80770461 + 1.5 NA intron (NM_152446, intron 16 of 24) intron (NM_152446, intron 16 of 24) 171356 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 287.25-9 chr2 204439717 204439985 + 1.5 NA Intergenic Intergenic -105624 NM_205863 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 242-9 chr12 77418890 77419194 + 1.5 NA Intergenic Intergenic -353473 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 238-31 chr6 143616313 143616591 + 1.5 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) 8272 NM_001100166 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 475.5 chr15 101337515 101338062 + 1.5 NA TTS (NR_132373) TTS (NR_132373) 3351 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 212.5-36 chr3 196852543 196852746 + 1.5 NA Intergenic L1M4|LINE|L1 -15212 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 150-38 chr2 100853599 100853808 + 1.5 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 33564 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 165.75-48 chr4 59689220 59689378 + 1.5 NA Intergenic Intergenic 675726 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 442.5-3 chr6 70309495 70309878 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -6602 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 125-95 chr8 133895139 133895373 + 1.5 NA intron (NR_125424, intron 1 of 3) intron (NR_125424, intron 1 of 3) 8760 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 298-18 chr3 117881930 117882366 + 1.5 NA Intergenic L2|LINE|L2 -191223 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 187-31 chr20 45298559 45298716 + 1.5 NA intron (NM_003833, intron 7 of 10) intron (NM_003833, intron 7 of 10) -8203 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 476.75 chr21 30298268 30298850 + 1.5 NA Intergenic Intergenic -9045 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 167.25-4 chr1 59389813 59389977 + 1.5 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 79863 NM_001350799 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 280.25-2 chr11 91158425 91158776 + 1.5 NA Intergenic Intergenic -289398 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 188-3 chr10 105673113 105673273 + 1.5 NA TTS (NR_120625) TTS (NR_120625) 147140 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 238.5-8 chr10 33325204 33325419 + 1.5 NA intron (NM_001244973, intron 2 of 16) MER96B|DNA|hAT-Tip100 9356 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 134-9 chr1 200611733 200611890 + 1.5 NA intron (NM_001305792, intron 2 of 27) MIR|SINE|MIR 7027 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 148.25-35 chr2 78194389 78194572 + 1.5 NA intron (NR_110288, intron 1 of 3) L1MA6|LINE|L1 96251 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 327.75-3 chr11 84144056 84144396 + 1.5 NA intron (NM_001142699, intron 9 of 27) MLT1K|LTR|ERVL-MaLR 129054 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 322.5-16 chr3 149978064 149978463 + 1.5 NA Intergenic Intergenic 5103 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 238-14 chr14 50293298 50293541 + 1.5 NA intron (NM_024884, intron 4 of 9) L1M5|LINE|L1 6527 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 149-46 chr5 102638010 102638173 + 1.5 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 33373 NR_103756 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 192.5-59 chr8 123956658 123956902 + 1.5 NA intron (NM_001039112, intron 2 of 40) intron (NM_001039112, intron 2 of 40) 84002 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 331-9 chr2 48667774 48668063 + 1.5 NA intron (NM_172311, intron 8 of 10) intron (NM_172311, intron 8 of 10) 50062 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 195.5-28 chr14 74414752 74414914 + 1.5 NA intron (NM_001105579, intron 1 of 3) intron (NM_001105579, intron 1 of 3) 11377 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 374-7 chr5 179787987 179788422 + 1.5 NA Intergenic L1M5|LINE|L1 -5782 NM_145867 4056 Hs.706741 NM_145867 ENSG00000213316 LTC4S - leukotriene C4 synthase protein-coding 256.25-15 chr7 29811211 29811543 + 1.5 NA intron (NM_001080529, intron 1 of 8) L4_A_Mam|LINE|RTE-X 4823 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 216-40 chr7 156166250 156166402 + 1.5 NA Intergenic L1MA7|LINE|L1 203694 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 159.5-13 chr10 105323846 105323976 + 1.5 NA Intergenic Intergenic 496422 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 191 chr1 67217978 67218139 + 1.5 NA intron (NM_144701, intron 6 of 10) intron (NM_144701, intron 6 of 10) 51604 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 153-20 chr2 125280496 125280613 + 1.5 NA Intergenic Intergenic 837431 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 358.5-8 chr9 2774642 2775015 + 1.5 NA Intergenic L1PA10|LINE|L1 57318 NM_133497 169522 Hs.622675 NM_133497 ENSG00000168263 KCNV2 KV11.1|Kv8.2|RCD3B potassium voltage-gated channel modifier subfamily V member 2 protein-coding 209-10 chr17 69184120 69184291 + 1.5 NA intron (NM_080282, intron 21 of 39) L1PBa|LINE|L1 -42310 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 234.5-41 chr7 122138583 122138774 + 1.5 NA intron (NM_005763, intron 1 of 23) intron (NM_005763, intron 1 of 23) 5571 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 117.75-42 chr2 176919157 176919282 + 1.5 NA Intergenic Intergenic 281465 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 217.75-7 chr11 106479011 106479331 + 1.5 NA Intergenic Intergenic 227764 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 225-14 chr2 76926866 76927326 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -58869 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 156-30 chr16 53570154 53570323 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -66934 NM_001308325 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 134.25-14 chr11 110316939 110317125 + 1.5 NA Intergenic Intergenic -20320 NM_001260493 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 205.5-43 chr3 197120921 197121155 + 1.5 NA intron (NM_001366216, intron 10 of 23) intron (NM_001366216, intron 10 of 23) 62834 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 295-8 chr3 96467640 96468030 + 1.5 NA Intergenic L1PA8|LINE|L1 107871 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 130.5-41 chr18 64172480 64172608 + 1.5 NA intron (NR_033881, intron 2 of 9) Tigger1|DNA|TcMar-Tigger -23518 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 258-10 chr12 5083073 5083259 + 1.5 NA Intergenic Intergenic 39287 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 206.5-33 chr20 52823184 52823499 + 1.5 NA Intergenic Intergenic -149017 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 454.5-3 chr22 26726150 26726504 + 1.5 NA intron (NR_110543, intron 2 of 5) MLT1H|LTR|ERVL-MaLR 53484 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 179.25-27 chr22 49353899 49354033 + 1.5 NA Intergenic L1ME3G|LINE|L1 189500 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 354.75-6 chr3 15786713 15787053 + 1.5 NA intron (NM_001349284, intron 2 of 2) intron (NM_001349284, intron 2 of 2) 11096 NM_001349284 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 160-26 chr2 239667029 239667174 + 1.5 NA Intergenic Intergenic -95759 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 157-39 chr3 44620730 44620937 + 1.5 NA intron (NR_046658, intron 1 of 1) intron (NR_046658, intron 1 of 1) 3964 NR_046658 100874094 NR_046658 ENSG00000233509 ZNF197-AS1 - ZNF197 antisense RNA 1 ncRNA 151.25-37 chr3 15023838 15024062 + 1.5 NA intron (NM_003298, intron 7 of 14) intron (NM_003298, intron 7 of 14) 41365 NM_022497 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 155.5-45 chr18 12502246 12502452 + 1.5 NA intron (NM_020148, intron 6 of 15) intron (NM_020148, intron 6 of 15) 69575 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 223.25-5 chr11 35519453 35519780 + 1.5 NA intron (NM_001282675, intron 2 of 12) intron (NM_001282675, intron 2 of 12) 6000 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 149.25-46 chr4 54068105 54068269 + 1.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -3582 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 183-70 chr8 86901489 86901678 + 1.5 NA intron (NM_173538, intron 2 of 10) MLT1J1|LTR|ERVL-MaLR 35168 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 158-69 chr8 139943786 139944033 + 1.5 NA intron (NM_001160372, intron 19 of 22) L1MEb|LINE|L1 156626 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 324.5 chr10 35463524 35463782 + 1.5 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 126779 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 200.5-20 chr14 82600842 82601058 + 1.5 NA Intergenic Intergenic -41682 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 136.5-26 chr12 55658676 55658788 + 1.5 NA Intergenic Intergenic 21840 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 240.5-4 chr1 110755612 110756050 + 1.5 NA Intergenic L1ME2|LINE|L1 -80891 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 210-47 chr9 36071699 36071974 + 1.5 NA intron (NM_001316345, intron 8 of 22) intron (NM_001316345, intron 8 of 22) 34923 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 215-49 chrUn_KI270337v1 738 897 + 1.5 NA NA SAR|Satellite|Satellite NA NA 258-4 chr1 88634109 88634317 + 1.5 NA intron (NR_110682, intron 1 of 3) L1M2|LINE|L1 -49931 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 205.5-7 chr10 97751851 97752067 + 1.5 NA intron (NM_001174121, intron 6 of 9) intron (NM_001174121, intron 6 of 9) 13482 NM_001002261 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 351.5 chr1 205616050 205616373 + 1.5 NA 3' UTR (NM_001973, exon 5 of 5) 3' UTR (NM_001973, exon 5 of 5) 16661 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 193.5-22 chr15 54921622 54921830 + 1.5 NA Intergenic L1PBa|LINE|L1 -135021 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 226.75-15 chr20 52396276 52396527 + 1.5 NA Intergenic LTR16C|LTR|ERVL -204416 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 266-13 chr20 46097929 46098390 + 1.5 NA Intergenic AluSx1|SINE|Alu -8197 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 171.25-20 chr16 7204753 7205042 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -127948 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 346.25-3 chr8 118377441 118377767 + 1.5 NA TTS (NM_207506) TTS (NM_207506) -243397 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 225.5-15 chr11 83377847 83378137 + 1.5 NA Intergenic Intergenic -91585 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 210.75-22 chr3 161668771 161668994 + 1.5 NA Intergenic L1MA4A|LINE|L1 172074 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 209.5-18 chr2 209500506 209500770 + 1.5 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 76591 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 161.25 chr1 47664008 47664210 + 1.5 NA Intergenic Intergenic -226792 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 203.75-20 chr2 14188899 14189096 + 1.5 NA Intergenic MIRb|SINE|MIR 211961 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 165-48 chr7 54575303 54575511 + 1.5 NA Intergenic Intergenic 18437 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 308.25-3 chr14 76007182 76007596 + 1.5 NA intron (NM_001102564, intron 2 of 8) intron (NM_001102564, intron 2 of 8) 21626 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 180.25-55 chr5 143545746 143546166 + 1.5 NA Intergenic Intergenic -110444 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 126-67 chr5 23555582 23555699 + 1.5 NA Intergenic Intergenic 47985 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 344.25-6 chr3 39503624 39504003 + 1.5 NA TTS (NM_001278323) TTS (NM_001278323) 1747 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 168-59 chr6 125472275 125472477 + 1.5 NA Intergenic L1ME3|LINE|L1 -170409 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 275.5-16 chr2 71800899 71801210 + 1.5 NA Intergenic Intergenic 334355 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 204-39 chr8 122696023 122696258 + 1.5 NA Intergenic AluSc|SINE|Alu -2034 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 135-50 chr3 116818920 116819140 + 1.5 NA Intergenic MIRb|SINE|MIR 31337 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 254.25-3 chr1 200204236 200204464 + 1.5 NA Intergenic L1MA9|LINE|L1 161525 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 257.5-2 chr1 117498652 117498950 + 1.5 NA intron (NM_006699, intron 10 of 12) intron (NM_006699, intron 10 of 12) 106969 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 238.5-25 chr4 38698632 38698809 + 1.5 NA 3' UTR (NM_016531, exon 6 of 6) 3' UTR (NM_016531, exon 6 of 6) -34092 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 136.5-11 chr10 25489809 25489942 + 1.5 NA intron (NM_020752, intron 5 of 10) L1M5|LINE|L1 -161837 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 200.5-41 chr22 20558527 20558692 + 1.5 NA intron (NM_001003891, intron 5 of 17) intron (NM_001003891, intron 5 of 17) 50562 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 135-82 chrX 79242323 79242450 + 1.5 NA Intergenic MIRb|SINE|MIR 71414 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 301-18 chr3 196131796 196132092 + 1.5 NA Intergenic Intergenic -10692 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 230-27 chr7 48260678 48260929 + 1.5 NA intron (NM_152701, intron 15 of 61) HAL1|LINE|L1 89345 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 142.5-75 chr4 182402181 182402294 + 1.5 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 158835 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 213.75-46 chr7 155735363 155735764 + 1.5 NA intron (NM_053043, intron 9 of 17) AluJo|SINE|Alu 73509 NR_132318 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS sonic hedgehog signaling molecule protein-coding 146-47 chr5 83683615 83683786 + 1.5 NA intron (NM_001884, intron 1 of 4) intron (NM_001884, intron 1 of 4) 37155 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 225.25-32 chr8 4411174 4411394 + 1.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 583630 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 179.25-8 chr10 82101761 82101994 + 1.5 NA intron (NR_163253, intron 2 of 10) L1MEf|LINE|L1 131043 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 172.5-47 chr3 72405303 72405512 + 1.5 NA intron (NM_012234, intron 1 of 3) intron (NM_012234, intron 1 of 3) 41216 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 161.75-37 chr4 29547825 29547978 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 333609 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 230.25-32 chr8 55915298 55915469 + 1.5 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) -12528 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 218 chr1 109078023 109078320 + 1.5 NA Intergenic MER20B|DNA|hAT-Charlie -2168 NM_005645 6884 Hs.632426 NM_005645 ENSG00000197780 TAF13 MRT60|TAF(II)18|TAF2K|TAFII-18|TAFII18 TATA-box binding protein associated factor 13 protein-coding 158-2 chr1 23144334 23144539 + 1.5 NA intron (NM_033631, intron 1 of 4) intron (NM_033631, intron 1 of 4) 24420 NM_033631 7798 Hs.257900 NM_033631 ENSG00000169641 LUZP1 LUZP leucine zipper protein 1 protein-coding 161.5-70 chr5 58493383 58493532 + 1.5 NA intron (NM_001304428, intron 1 of 2) intron (NM_001304428, intron 1 of 2) 2022 NM_152687 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 199-25 chr2 177762238 177762424 + 1.5 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 89009 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 373.5-3 chr16 6075692 6075965 + 1.5 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 56125 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 148.5-100 chr7 40858561 40858707 + 1.5 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 121305 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 172.75-20 chr2 78820347 78820497 + 1.5 NA Intergenic LTR33|LTR|ERVL -205280 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 252-25 chr6 54017649 54017945 + 1.5 NA Intergenic Intergenic -1119 NM_138569 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 153-30 chr3 82251893 82251998 + 1.5 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 265803 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 182.25-31 chr20 56314453 56314655 + 1.5 NA Intergenic L1MB8|LINE|L1 -44420 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 236.5-44 chr7 78972138 78972329 + 1.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -36755 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 234.5-36 chr6 38656391 38656606 + 1.5 NA Intergenic L1ME3A|LINE|L1 -16569 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 175.5-59 chr5 99193843 99193980 + 1.5 NA Intergenic SATR1|Satellite|Satellite -264197 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 174-31 chr2 115518642 115518773 + 1.5 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 174892 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 178.25-24 chr2 21309979 21310111 + 1.5 NA Intergenic Charlie5|DNA|hAT-Charlie 186059 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 179.5-16 chr10 78832253 78832411 + 1.5 NA Intergenic Intergenic 235116 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 186.75-29 chr2 143248209 143248437 + 1.5 NA intron (NM_018460, intron 5 of 13) L2a|LINE|L2 118904 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 153.75-34 chr16 76721342 76721500 + 1.5 NA Intergenic Intergenic 86423 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 285.75-13 chr2 226620774 226621003 + 1.5 NA Intergenic Intergenic 37905 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 249-20 chr20 1725166 1725357 + 1.5 NA Intergenic MER88|LTR|ERVL 54485 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 135.75-40 chr18 4054955 4055088 + 1.5 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 92668 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 261.5-23 chr5 18955488 18955814 + 1.5 NA Intergenic L1MA9|LINE|L1 930621 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 320.5-9 chr17 8358206 8358563 + 1.5 NA TTS (NR_024447) TTS (NR_024447) 2157 NR_024447 100128288 Hs.549913 NR_024447 LOC100128288 - uncharacterized LOC100128288 ncRNA 170.5-15 chr10 122913441 122913657 + 1.5 NA TTS (NM_001029888) TTS (NM_001029888) 2939 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 272-26 chr8 89549893 89550145 + 1.5 NA Intergenic Intergenic 207692 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 298.5-4 chr10 101926948 101927303 + 1.5 NA intron (NM_024541, intron 23 of 25) intron (NM_024541, intron 23 of 25) -83205 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 159-41 chr20 39266624 39266762 + 1.5 NA Intergenic Intergenic -41945 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 203.25-12 chr11 98263904 98264104 + 1.5 NA Intergenic L1M2|LINE|L1 -756945 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 237-3 chr11 40398282 40398491 + 1.5 NA intron (NM_020929, intron 2 of 4) L2a|LINE|L2 -105256 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 240-28 chr9 115147661 115147868 + 1.5 NA intron (NR_163556, intron 1 of 7) L2c|LINE|L2 5946 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 315.5-12 chr9 27208542 27208830 + 1.5 NA intron (NM_001290077, intron 14 of 21) intron (NM_001290077, intron 14 of 21) 74107 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 200.5-72 chrX 124523181 124523417 + 1.5 NA intron (NM_014253, intron 17 of 30) intron (NM_014253, intron 17 of 30) 177017 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 307-3 chr12 124472212 124472468 + 1.5 NA intron (NM_001077261, intron 6 of 47) intron (NM_001077261, intron 6 of 47) 95272 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 453-2 chr3 37390173 37390485 + 1.5 NA intron (NM_178344, intron 1 of 3) L1PREC2|LINE|L1 4060 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 159-57 chr7 29273493 29273612 + 1.5 NA intron (NM_001293072, intron 1 of 12) L1MA9|LINE|L1 -64582 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 313.5-19 chr8 118210677 118211088 + 1.5 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -99063 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 186-10 chr11 80822529 80822767 + 1.5 NA Intergenic Intergenic -59845 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 188.25-13 chr16 6788773 6788977 + 1.5 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 15066 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 339.5-10 chr7 27060660 27060964 + 1.5 NA Intergenic L1MA5A|LINE|L1 35188 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 211.5-57 chr9 82516513 82516704 + 1.5 NA Intergenic Intergenic 527836 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 400-4 chr19 27563089 27563555 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -230109 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 366.5-3 chr12 117104264 117104833 + 1.5 NA intron (NR_120464, intron 2 of 2) intron (NR_120464, intron 2 of 2) 5081 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 252.5-6 chr13 41400948 41401178 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -41501 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 210.75-38 chr8 128148096 128148339 + 1.5 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat -1899 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 392.75 chr10 32389946 32390524 + 1.5 NA Intergenic Intergenic -11466 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 152.25-28 chr17 51266856 51267021 + 1.5 NA intron (NM_016001, intron 3 of 13) AluJb|SINE|Alu 6392 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 327.25-2 chr10 104018145 104018533 + 1.5 NA intron (NM_001304743, intron 13 of 17) intron (NM_001304743, intron 13 of 17) 29847 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 207.75-40 chr8 105456414 105456657 + 1.5 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 136992 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 216-45 chrX 89085915 89086238 + 1.5 NA Intergenic L1MB7|LINE|L1 338851 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 273-17 chr2 126609708 126609917 + 1.5 NA Intergenic L1ME3D|LINE|L1 -46123 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 236.5-22 chr18 5082956 5083230 + 1.5 NA intron (NR_146900, intron 1 of 3) MER41A|LTR|ERV1 1911 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 219-36 chr8 34753071 34753256 + 1.5 NA Intergenic AluJo|SINE|Alu -30758 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 221-31 chr4 61920485 61920739 + 1.5 NA intron (NM_001322246, intron 12 of 25) MLT1J|LTR|ERVL-MaLR 241153 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 277-5 chr12 22675630 22676002 + 1.5 NA intron (NM_018638, intron 6 of 7) intron (NM_018638, intron 6 of 7) 50645 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 239-9 chr10 71198554 71198969 + 1.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -13809 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 291.25-17 chr4 65208833 65209190 + 1.5 NA Intergenic Intergenic -204511 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 145.75-74 chr8 118157186 118157385 + 1.5 NA intron (NR_146234, intron 4 of 5) MIRb|SINE|MIR -45466 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 143-76 chr9 75860780 75860943 + 1.5 NA Intergenic Intergenic -29783 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 179-40 chr3 81624773 81624977 + 1.5 NA intron (NM_000158, intron 7 of 15) intron (NM_000158, intron 7 of 15) 136770 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 139.5-73 chr4 185805158 185805295 + 1.5 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) 5668 NM_001145672 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 246.25-17 chr20 58227206 58227638 + 1.5 NA intron (NM_001304369, intron 1 of 3) intron (NM_001304369, intron 1 of 3) 1231 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 176.5-22 chr12 83799071 83799265 + 1.5 NA Intergenic Intergenic 1112013 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 117.5-15 chr12 4777848 4777967 + 1.5 NA Intergenic MER99|DNA|hAT? -31269 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 318.25-6 chr7 112412555 112412869 + 1.5 NA Intergenic Intergenic -10432 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 418 chr14 52818986 52819397 + 1.5 NA Intergenic Intergenic -27584 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 392.5-10 chr8 59713162 59713447 + 1.5 NA Intergenic Tigger4|DNA|TcMar-Tigger 568096 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 129.5-72 chr4 157060558 157060690 + 1.5 NA Intergenic Intergenic -15501 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 228.75-2 chr1 239682968 239683210 + 1.5 NA intron (NM_000740, intron 3 of 4) L1MA6|LINE|L1 36030 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 171.25-59 chr8 105236293 105236519 + 1.5 NA Intergenic L1MDa|LINE|L1 -82032 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 150.5-21 chr12 83557456 83557623 + 1.5 NA Intergenic Intergenic 870384 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 196.5-37 chr18 2528204 2528388 + 1.5 NA Intergenic L2a|LINE|L2 43209 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 230.25-13 chr2 46604819 46605054 + 1.5 NA intron (NM_173074, intron 4 of 6) L1MA3|LINE|L1 12105 NM_002643 5281 Hs.468415 NM_002643 ENSG00000151665 PIGF - phosphatidylinositol glycan anchor biosynthesis class F protein-coding 279-22 chr8 97541448 97541730 + 1.5 NA Intergenic Intergenic -95092 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 267-19 chr3 192058290 192058550 + 1.5 NA Intergenic Intergenic -180210 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 187.5-11 chr10 114382174 114382385 + 1.5 NA intron (NM_001351073, intron 1 of 19) intron (NM_001351073, intron 1 of 19) 22223 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 234.75-45 chr8 133088930 133089158 + 1.5 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) 13558 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 267.5-33 chr7 98294818 98295138 + 1.5 NA intron (NM_018842, intron 12 of 13) intron (NM_018842, intron 12 of 13) 13292 NM_001159491 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 272.5-11 chr3 100082196 100082457 + 1.5 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 32187 NM_182909 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 196.75-6 chr11 81606604 81606883 + 1.5 NA Intergenic Intergenic 284093 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 304.5-7 chr2 106137985 106138209 + 1.5 NA intron (NM_025076, intron 6 of 14) intron (NM_025076, intron 6 of 14) 784 NM_001253876 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 182.5-53 chr4 170524652 170524862 + 1.5 NA Intergenic L1MB7|LINE|L1 218978 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 258-29 chr6 73379895 73380126 + 1.5 NA Intergenic Charlie1|DNA|hAT-Charlie -10218 NM_001080507 441161 Hs.671212 NM_001080507 ENSG00000203907 OOEP C6orf156|FLOPED|HOEP19|KHDC2 oocyte expressed protein protein-coding 273.5-7 chr12 52745705 52746079 + 1.5 NA Intergenic AluJr|SINE|Alu 31453 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 265.5-2 chr1 227481893 227482177 + 1.5 NA Intergenic Intergenic -81521 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 217.5-17 chr2 7472298 7472578 + 1.5 NA Intergenic Intergenic 51177 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 138.25-15 chr11 21280149 21280357 + 1.5 NA intron (NM_201551, intron 14 of 18) L1MC1|LINE|L1 610667 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 125.75-67 chr6 159736861 159737064 + 1.5 NA intron (NM_152857, intron 2 of 5) intron (NM_152857, intron 2 of 5) 9456 NM_001270533 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 WT1 associated protein protein-coding 177-66 chr9 102930135 102930276 + 1.5 NA Intergenic Intergenic -65128 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 210.5-58 chr8 114745545 114745838 + 1.5 NA Intergenic Intergenic 922322 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 191.5-19 chr12 129993760 129993887 + 1.5 NA Intergenic Intergenic 48519 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 265.25-25 chr7 70389438 70389708 + 1.5 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -742571 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 176.75-9 chr12 105654382 105654551 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -49737 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 221.5-17 chr18 61578427 61578659 + 1.5 NA Intergenic Intergenic -169633 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 179.5-59 chr2 195127920 195128067 + 1.5 NA Intergenic Intergenic 397398 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 235.25-24 chr6 48766754 48767009 + 1.5 NA Intergenic Intergenic 696372 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 231.75-21 chr3 122474435 122474696 + 1.5 NA intron (NR_026698, intron 2 of 14) L1MC1|LINE|L1 40374 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 226-21 chr4 33887437 33887636 + 1.5 NA Intergenic Intergenic 152357 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 125.5-35 chr12 101731413 101731535 + 1.5 NA intron (NM_153694, intron 7 of 8) intron (NM_153694, intron 7 of 8) 7988 NM_001177949 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 200.25-45 chr7 79461025 79461360 + 1.5 NA non-coding (NR_038343, exon 4 of 4) non-coding (NR_038343, exon 4 of 4) 7232 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 448.25 chr2 177211763 177212259 + 1.5 NA promoter-TSS (NM_001330248) promoter-TSS (NM_001330248) 400 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 200.5-16 chr13 27915165 27915397 + 1.5 NA intron (NR_047484, intron 1 of 4) intron (NR_047484, intron 1 of 4) 2010 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 195.5-62 chr4 61501625 61501865 + 1.5 NA intron (NM_001322246, intron 3 of 25) intron (NM_001322246, intron 3 of 25) 299573 NM_001371342 240.5-25 chr2 51512441 51512805 + 1.5 NA intron (NR_135237, intron 4 of 10) X7A_LINE|LINE|CR1 480022 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 135.75-53 chr2 187372051 187372178 + 1.5 NA intron (NM_001369434, intron 9 of 15) intron (NM_001369434, intron 9 of 15) 76138 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 139.5-94 chr6 147074486 147074616 + 1.5 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -84374 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 296.5-10 chr14 80265230 80265499 + 1.5 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -34307 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 184.5-27 chr14 75342175 75342330 + 1.5 NA Intergenic AluJr4|SINE|Alu 47848 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 274.5-33 chr7 3993616 3993933 + 1.5 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -135911 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 204-8 chr11 16247246 16247477 + 1.5 NA intron (NM_033326, intron 3 of 15) L1MA3|LINE|L1 109185 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 202.5-59 chrX 64340181 64340465 + 1.5 NA intron (NM_017677, intron 8 of 13) intron (NM_017677, intron 8 of 13) 55129 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 240.75-4 chr10 120646651 120646841 + 1.5 NA Intergenic Intergenic 48797 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 252.75-10 chr18 4736858 4737162 + 1.5 NA Intergenic Intergenic -281703 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 410.5-2 chr8 107446698 107447329 + 1.5 NA intron (NM_001199859, intron 1 of 8) L2a|LINE|L2 50905 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 199.75-7 chr14 30758978 30759165 + 1.5 NA Intergenic L2a|LINE|L2 -115464 NM_001347720 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 172.25-46 chr3 67365247 67365419 + 1.5 NA intron (NM_001177599, intron 10 of 10) intron (NM_001177599, intron 10 of 10) 139869 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 195.5-88 chr8 110099493 110099690 + 1.5 NA Intergenic Tigger6a|DNA|TcMar-Tigger -123820 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 215.5-22 chr19 31268985 31269155 + 1.5 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 80366 NR_138034 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 161-44 chr20 985439 985663 + 1.5 NA intron (NM_001029871, intron 1 of 4) L2b|LINE|L2 16760 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 203.25-52 chr8 75870031 75870245 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X 330170 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 143.5-86 chr5 164050307 164050408 + 1.5 NA Intergenic Intergenic 417045 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 183.5-21 chr14 60327050 60327278 + 1.5 NA Intergenic Intergenic 3968 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 174-8 chr10 53230734 53230959 + 1.5 NA Intergenic L1M5|LINE|L1 -459146 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 339.75-11 chr3 190104749 190105033 + 1.5 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 16006 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 140.5-113 chr8 129944869 129945052 + 1.5 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -5149 NM_001353297 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 218-27 chr20 11758207 11758406 + 1.5 NA Intergenic Intergenic 112409 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 162.5-61 chr4 99302499 99302690 + 1.5 NA Intergenic HAL1|LINE|L1 -11609 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 137.5-105 chr7 39032441 39032627 + 1.5 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -18967 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 126-7 chr10 62167401 62167578 + 1.5 NA Intergenic Intergenic 101355 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 271.5-18 chr3 104503472 104503766 + 1.5 NA Intergenic Intergenic -863094 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 208.5-33 chr18 24102086 24102354 + 1.5 NA intron (NM_001135993, intron 6 of 13) intron (NM_001135993, intron 6 of 13) -11107 NM_001292030 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 246.5-17 chr5 38483080 38483255 + 1.5 NA intron (NM_001127671, intron 18 of 19) intron (NM_001127671, intron 18 of 19) 37621 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 322-5 chr21 31934390 31934756 + 1.5 NA intron (NM_014586, intron 2 of 10) L1PA16|LINE|L1 61553 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 159.5-48 chr2 225013063 225013415 + 1.5 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) -2699 NR_039641 100616207 NR_039641 ENSG00000263828 MIR4439 - microRNA 4439 ncRNA 135-69 chr7 11442333 11442548 + 1.5 NA intron (NM_015204, intron 13 of 26) intron (NM_015204, intron 13 of 26) 389758 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 262.75-16 chr5 151342257 151342662 + 1.5 NA intron (NM_181776, intron 4 of 9) L2c|LINE|L2 5100 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 167.25-38 chr2 121709641 121709802 + 1.5 NA intron (NR_037857, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 27154 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 205.5-8 chr11 35376415 35376627 + 1.5 NA intron (NM_001252652, intron 1 of 11) L1MC4a|LINE|L1 43037 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 232.75-9 chr19 28080569 28080862 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -286775 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 194.5-18 chr12 102213775 102213972 + 1.5 NA Intergenic L2a|LINE|L2 -16040 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 122.5-63 chr3 185232807 185232952 + 1.5 NA intron (NM_001966, intron 3 of 6) L1M4|LINE|L1 20393 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 202.5-6 chr12 64123454 64123631 + 1.5 NA intron (NM_001346201, intron 18 of 21) intron (NM_001346201, intron 18 of 21) 98754 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 238.5-17 chr2 37693888 37694124 + 1.5 NA Intergenic Intergenic -21471 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 188.5-49 chr6 56997131 56997271 + 1.5 NA intron (NM_152731, intron 3 of 6) L2a|LINE|L2 42094 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 305-15 chr4 31392568 31392866 + 1.5 NA Intergenic Intergenic -113827 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 118.25-16 chr11 75886493 75886613 + 1.5 NA intron (NM_003369, intron 4 of 14) intron (NM_003369, intron 4 of 14) 71343 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 222-31 chr4 46138606 46138849 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -14673 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 207-54 chr8 135775199 135775518 + 1.5 NA Intergenic MER54B|LTR|ERVL 317902 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 169-28 chr2 139652966 139653111 + 1.5 NA Intergenic Intergenic 755714 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 261-34 chr5 10990540 10990816 + 1.5 NA intron (NM_001288715, intron 18 of 20) intron (NM_001288715, intron 18 of 20) -229444 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 217.5-22 chr2 202990552 202990797 + 1.5 NA Intergenic Intergenic -24205 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 320.25-14 chr8 25227554 25227910 + 1.5 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 43043 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 171-13 chr11 61167730 61167865 + 1.5 NA Intergenic Intergenic -6371 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 221.5-18 chr2 43882925 43883127 + 1.5 NA TTS (NM_022437) TTS (NM_022437) 44055 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 203-4 chr10 27528694 27528919 + 1.5 NA intron (NM_001256412, intron 3 of 4) L1ME3B|LINE|L1 24502 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 222-34 chr5 7391838 7392093 + 1.5 NA Intergenic Intergenic -4173 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 198-29 chr22 28548932 28549073 + 1.5 NA intron (NM_001145418, intron 2 of 22) A-rich|Low_complexity|Low_complexity 89133 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 173-31 chr20 4436060 4436259 + 1.5 NA Intergenic Intergenic -186872 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 169.5-43 chr2 124943103 124943334 + 1.5 NA Intergenic Intergenic 917931 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 189.75-10 chr12 34718824 34719022 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 696427 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 220.75-30 chr7 45249365 45249591 + 1.5 NA Intergenic L1M4|LINE|L1 91687 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 149-60 chr9 28568545 28568661 + 1.5 NA intron (NM_152570, intron 2 of 6) L1M2|LINE|L1 150702 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 172.5-20 chr16 8919365 8919558 + 1.5 NA intron (NM_001286458, intron 6 of 31) intron (NM_001286458, intron 6 of 31) 17178 NM_001286458 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 227.25-17 chr17 62660525 62660726 + 1.5 NA intron (NM_006039, intron 1 of 29) L1MEb|LINE|L1 32955 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 207-22 chr18 67107115 67107274 + 1.5 NA Intergenic Intergenic 25610 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 179-5 chr10 12351264 12351498 + 1.5 NA intron (NM_153498, intron 1 of 10) intron (NM_153498, intron 1 of 10) 1834 NM_153498 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 190.5-26 chr15 22844016 22844216 + 1.5 NA intron (NM_001184889, intron 3 of 9) intron (NM_001184889, intron 3 of 9) 5475 NM_001008860 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 174-45 chr5 91613944 91614132 + 1.5 NA Intergenic Intergenic -230721 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 264.25-3 chr12 122340865 122341195 + 1.5 NA exon (NM_001247997, exon 11 of 26) exon (NM_001247997, exon 11 of 26) -54512 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 177-33 chr20 38766576 38766779 + 1.5 NA intron (NM_024855, intron 7 of 8) intron (NM_024855, intron 7 of 8) 18217 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M actin related protein 5 protein-coding 307.5-15 chr7 93096109 93096401 + 1.5 NA Intergenic LTR33|LTR|ERVL 21724 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 174.5-81 chr8 119053028 119053169 + 1.5 NA intron (NM_001324095, intron 3 of 7) LTR85c|LTR|Gypsy? -14149 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 213-23 chr2 143276351 143276717 + 1.5 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 147115 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 255.5-7 chr14 31089516 31089774 + 1.5 NA intron (NM_001128126, intron 5 of 5) AluSz6|SINE|Alu 63002 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 173-41 chr4 40423394 40423515 + 1.5 NA 3' UTR (NM_019027, exon 5 of 5) 3' UTR (NM_019027, exon 5 of 5) 78665 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 180.5-30 chr17 50505915 50506081 + 1.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -2441 NM_001366294 84073 Hs.398196 NM_032133 ENSG00000136449 MYCBPAP AMAP-1|AMAP1 MYCBP associated protein protein-coding 234.5-23 chr2 73616015 73616222 + 1.5 NA Intergenic Intergenic 26304 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 313-12 chr6 3215368 3215629 + 1.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger 12155 NM_178012 347733 Hs.300701 NM_178012 ENSG00000137285 TUBB2B CDCBM7|PMGYSA|bA506K6.1 tubulin beta 2B class IIb protein-coding 313-7 chr17 56659570 56659798 + 1.5 NA Intergenic L1ME3G|LINE|L1 65985 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 221.5-55 chr9 127780645 127780818 + 1.5 NA Intergenic Intergenic -2065 NM_170600 10044 Hs.306412 NM_005489 ENSG00000095370 SH2D3C CHAT|NSP3|PRO34088|SHEP1 SH2 domain containing 3C protein-coding 230.5-39 chr4 83982139 83982358 + 1.5 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 316921 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 247.5-2 chr1 175316931 175317212 + 1.5 NA 3' UTR (NM_001328635, exon 23 of 23) 3' UTR (NM_001328635, exon 23 of 23) -124084 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 263.5-27 chr5 102038448 102038672 + 1.5 NA Intergenic (GA)n|Simple_repeat|Simple_repeat 257724 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 190-23 chr2 24539675 24539918 + 1.5 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) -44681 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 207.75-43 chr9 27844120 27844391 + 1.5 NA Intergenic Intergenic -270389 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 177.75-18 chr17 32463571 32464033 + 1.5 NA intron (NM_002815, intron 3 of 13) intron (NM_002815, intron 3 of 13) 19292 NM_002815 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 298-9 chr16 6053265 6053565 + 1.5 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 33712 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 252-27 chr6 168070607 168070925 + 1.5 NA intron (NR_110312, intron 3 of 15) intron (NR_110312, intron 3 of 15) 5069 NM_001122841 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 150-86 chr9 32548882 32549025 + 1.5 NA intron (NM_001195622, intron 1 of 1) intron (NM_001195622, intron 1 of 1) -2191 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 213.5-37 chr4 65827464 65827718 + 1.5 NA Intergenic Intergenic -157096 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 267-21 chr5 28220498 28220799 + 1.5 NA Intergenic Intergenic 67017 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 291.75-11 chr2 157604862 157605199 + 1.5 NA intron (NM_145259, intron 1 of 8) L1ME1|LINE|L1 -7470 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 168-54 chr5 32047977 32048194 + 1.5 NA intron (NM_178140, intron 7 of 24) L1ME3A|LINE|L1 -111926 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 385 chr1 30765903 30766433 + 1.5 NA Intergenic Intergenic -8394 NM_006762 7805 Hs.371021 NM_006762 ENSG00000162511 LAPTM5 CLAST6 lysosomal protein transmembrane 5 protein-coding 293-17 chr5 95810553 95810774 + 1.5 NA Intergenic HAL1|LINE|L1 12063 NM_001243658 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 209.5-52 chr9 19769678 19769871 + 1.5 NA intron (NM_020344, intron 1 of 9) MER91A|DNA|hAT-Tip100 17245 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 138.5-91 chr6 16141027 16141175 + 1.5 NA promoter-TSS (NR_039782) promoter-TSS (NR_039782) -455 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 171-63 chr9 35238156 35238504 + 1.5 NA intron (NM_006377, intron 5 of 38) HAL1ME|LINE|L1 76321 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 202.5-27 chr3 38953494 38953740 + 1.5 NA intron (NM_001349253, intron 4 of 29) L2b|LINE|L2 -3056 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 215-28 chr21 31446411 31446592 + 1.5 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -102147 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 260-16 chr2 129215585 129215809 + 1.5 NA Intergenic L1MB8|LINE|L1 58194 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 252.5-31 chr5 171202535 171202773 + 1.5 NA intron (NM_022897, intron 19 of 27) intron (NM_022897, intron 19 of 27) -106594 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 134-34 chr2 75101251 75101353 + 1.5 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) 10490 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 137.5-59 chr2 103814655 103814850 + 1.5 NA Intergenic Intergenic 593580 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 234-43 chr8 134736269 134736573 + 1.5 NA Intergenic Tigger8|DNA|TcMar-Tigger -23390 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 287-2 chr1 171116746 171117052 + 1.5 NA intron (NM_001002294, intron 8 of 8) MIRc|SINE|MIR -15093 NR_031627 100302178 NR_031627 ENSG00000221390 MIR1295A MIR1295|MIRN1295|hsa-mir-1295|hsa-mir-1295a|mir-1295a microRNA 1295a ncRNA 306-3 chr10 17540313 17540581 + 1.5 NA Intergenic L1MB7|LINE|L1 76927 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 207.75-24 chr21 27233169 27233501 + 1.5 NA Intergenic Intergenic -266247 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 243-27 chr5 167558710 167558969 + 1.5 NA intron (NM_001122679, intron 3 of 29) MER1A|DNA|hAT-Charlie -14820 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 189-5 chr1 91026644 91026899 + 1.5 NA Intergenic Intergenic -4516 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 180.5-67 chr4 99040107 99040308 + 1.5 NA intron (NM_015143, intron 5 of 10) intron (NM_015143, intron 5 of 10) 42820 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 345.5-7 chr5 105675859 105676200 + 1.5 NA Intergenic L3|LINE|CR1 576555 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 262.75-20 chr8 136332807 136333027 + 1.5 NA Intergenic Intergenic -197881 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 227.75-20 chr5 144698673 144698929 + 1.5 NA Intergenic Intergenic 493410 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 238-26 chr4 58994847 58995042 + 1.5 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -6790 NR_133939 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 160-23 chr2 208003550 208003681 + 1.5 NA intron (NM_001080475, intron 1 of 7) intron (NM_001080475, intron 1 of 7) 21912 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 307-13 chr5 99173617 99173940 + 1.5 NA Intergenic Intergenic -244064 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 336-4 chr12 60937109 60937427 + 1.5 NA Intergenic L1PA15-16|LINE|L1 1247898 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 114.5-55 chr2 124855400 124855576 + 1.5 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 830201 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 318-28 chr8 137610260 137610783 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -196933 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 319-8 chr3 136355569 136356015 + 1.5 NA intron (NM_005862, intron 28 of 33) L1M4b|LINE|L1 105452 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 240.5-23 chr18 72691458 72691694 + 1.5 NA Intergenic L1M4|LINE|L1 -147234 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 282.5-9 chr16 71317892 71318212 + 1.5 NA Intergenic Intergenic -28330 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 182.75-51 chr6 170124797 170125002 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -35743 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 227.25-19 chr18 75083510 75083818 + 1.5 NA Intergenic Intergenic 121849 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 200.25-33 chr3 111332878 111333088 + 1.5 NA Intergenic Intergenic -209214 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 177-4 chr10 32308589 32308777 + 1.5 NA intron (NM_001282391, intron 1 of 13) L1MA3|LINE|L1 38475 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 190.5-73 chr9 82350019 82350265 + 1.5 NA Intergenic Intergenic 361370 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 281.5-16 chr6 67178707 67178926 + 1.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -876535 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 255.25-7 chr12 6129785 6130047 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -5241 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 286-13 chr15 69426047 69426268 + 1.5 NA exon (NM_001281301, exon 7 of 21) exon (NM_001281301, exon 7 of 21) -11128 NR_132971 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 160.5-52 chr3 106186466 106186607 + 1.5 NA Intergenic Intergenic -317135 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 170.5-40 chr2 34960780 34960988 + 1.5 NA Intergenic AluJb|SINE|Alu 283327 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 366-2 chr10 44734677 44735010 + 1.5 NA Intergenic MIRb|SINE|MIR -176473 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 156.75-43 chr2 15883074 15883213 + 1.5 NA Intergenic L1MC5|LINE|L1 -37256 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 254.5-3 chr1 50498381 50498633 + 1.5 NA intron (NM_007051, intron 15 of 18) L1MB4|LINE|L1 -75064 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 233.5-39 chr4 36772156 36772374 + 1.5 NA Intergenic Intergenic -130365 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 342.5-2 chr11 76023458 76023876 + 1.5 NA intron (NM_003369, intron 12 of 14) L1MB4|LINE|L1 182835 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 276.75-6 chr13 87981163 87981373 + 1.5 NA Intergenic Intergenic -161599 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 181-29 chr2 55218628 55218806 + 1.5 NA intron (NM_001353782, intron 1 of 9) intron (NM_001353782, intron 1 of 9) -13186 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 134.75-32 chr2 53045150 53045254 + 1.5 NA Intergenic L1MA7|LINE|L1 -342587 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 150.5-76 chr5 158786919 158787027 + 1.5 NA intron (NM_001324107, intron 9 of 15) intron (NM_001324107, intron 9 of 15) 310983 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 180.5-38 chr2 42713473 42713643 + 1.5 NA intron (NM_001330443, intron 14 of 16) intron (NM_001330443, intron 14 of 16) 50703 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 127.5-128 chr9 84941806 84941964 + 1.5 NA intron (NM_001018064, intron 14 of 17) intron (NM_001018064, intron 14 of 17) 235984 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 255-8 chr14 79454483 79454792 + 1.5 NA intron (NM_001105250, intron 1 of 6) L1M1|LINE|L1 175257 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 249-4 chr10 20195998 20196221 + 1.5 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -355861 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 174-54 chr9 28680759 28680950 + 1.5 NA intron (NM_001354574, intron 2 of 5) L1MA8|LINE|L1 38451 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168-26 chr14 31583979 31584188 + 1.5 NA intron (NM_001201573, intron 1 of 8) intron (NM_001201573, intron 1 of 8) 6167 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 241-10 chr12 23010038 23010426 + 1.5 NA Intergenic Intergenic -165404 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 191-24 chr2 82079159 82079302 + 1.5 NA Intergenic Intergenic -612284 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 166.5-65 chr3 115925349 115925581 + 1.5 NA intron (NM_001318915, intron 3 of 8) MER115|DNA|hAT-Tip100 -20339 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 158.25-24 chr2 60586073 60586240 + 1.5 NA Intergenic Intergenic -32502 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 139-17 chr14 44624250 44624377 + 1.5 NA Intergenic L1MEg|LINE|L1 116904 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 149.5-66 chr3 52770026 52770221 + 1.5 NA intron (NM_003157, intron 1 of 15) L2|LINE|L2 817 NM_001348412 6787 Hs.631921 NM_003157 ENSG00000114904 NEK4 NRK2|STK2|pp12301 NIMA related kinase 4 protein-coding 208.5-54 chr4 76910198 76910462 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -12186 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 127-34 chr16 21195181 21195365 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 19237 NM_001290104 7783 Hs.73982 NM_003460 ENSG00000103310 ZP2 OOMD6|ZPA|Zp-2 zona pellucida glycoprotein 2 protein-coding 246.5-3 chr14 49251610 49251871 + 1.5 NA Intergenic L1PA15|LINE|L1 334640 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 221-36 chr5 26325872 26326127 + 1.5 NA Intergenic MER52A|LTR|ERV1 712587 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 165-32 chr2 165473509 165473697 + 1.5 NA intron (NM_001172173, intron 1 of 6) intron (NM_001172173, intron 1 of 6) 3905 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 275.5-25 chr5 139928027 139928354 + 1.5 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 115109 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 195.5-23 chr14 40431194 40431517 + 1.5 NA Intergenic L1MC3|LINE|L1 -523356 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 172.25-39 chr20 46589741 46589951 + 1.5 NA intron (NM_001193340, intron 7 of 12) L1M4|LINE|L1 -39192 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 241-36 chr9 31792850 31793187 + 1.5 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -411528 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 275-18 chr8 125745848 125746155 + 1.5 NA Intergenic Intergenic 205196 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 129-32 chr18 1430537 1430665 + 1.5 NA Intergenic Intergenic -70972 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 171.25-7 chr11 36661682 36661951 + 1.5 NA Intergenic Charlie5|DNA|hAT-Charlie -63537 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 146-53 chr6 118365381 118365490 + 1.5 NA Intergenic Intergenic -135938 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 242.25-9 chr15 70437368 70437645 + 1.5 NA Intergenic Intergenic 68422 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 189-24 chr17 82609117 82609248 + 1.5 NA Intergenic L1M4|LINE|L1 39262 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 289.5-6 chr15 58663892 58664101 + 1.5 NA intron (NM_001320570, intron 5 of 14) L2b|LINE|L2 29611 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 194.5 chr1 34875378 34875665 + 1.5 NA intron (NM_001080418, intron 8 of 11) (GTTGTT)n|Simple_repeat|Simple_repeat -15772 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 262.5-19 chr2 114227484 114227681 + 1.5 NA Intergenic Intergenic -215059 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 196-15 chr14 84552955 84553131 + 1.5 NA Intergenic Intergenic -718889 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 186-2 chr1 39069569 39069738 + 1.5 NA Intergenic L2a|LINE|L2 -14514 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 305.75-6 chr2 14497824 14498310 + 1.5 NA Intergenic Intergenic -97109 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 354.5-2 chr14 82209415 82209805 + 1.5 NA Intergenic Intergenic -433022 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 297-5 chr11 10184723 10185236 + 1.5 NA intron (NM_030962, intron 2 of 39) L1MB3|LINE|L1 109228 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 193-35 chr20 2793104 2793301 + 1.5 NA TTS (NM_019609) TTS (NM_019609) 7425 NM_019609 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 208-43 chr9 38315801 38316071 + 1.5 NA Intergenic Intergenic -76766 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 132.5-31 chr15 51396395 51396594 + 1.5 NA intron (NM_001330297, intron 5 of 9) intron (NM_001330297, intron 5 of 9) 19248 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 202.5 chr1 190789192 190789358 + 1.5 NA intron (NR_033922, intron 2 of 4) L2a|LINE|L2 164385 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 133-68 chr8 117279113 117279310 + 1.5 NA Intergenic Intergenic 144216 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 137.5-8 chr10 35672613 35672799 + 1.5 NA Intergenic AluSq|SINE|Alu -31272 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 229.5-54 chr8 128443886 128444052 + 1.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 120710 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 338-4 chr17 51528392 51528772 + 1.5 NA Intergenic MIR|SINE|MIR 93155 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 264.5-29 chr8 139583440 139583651 + 1.5 NA Intergenic Intergenic 119578 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 373.75-3 chr20 45398813 45399148 + 1.5 NA intron (NR_003189, intron 3 of 5) L1MCa|LINE|L1 -7013 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 243.75-7 chr15 42637977 42638251 + 1.5 NA intron (NM_020759, intron 6 of 32) intron (NM_020759, intron 6 of 32) 62508 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 142-47 chr4 59493371 59493488 + 1.5 NA Intergenic Intergenic 479856 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 210.5-37 chr21 26100265 26100488 + 1.5 NA intron (NM_001136129, intron 1 of 14) intron (NM_001136129, intron 1 of 14) 40014 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 438.5-7 chr7 99295358 99295783 + 1.5 NA intron (NR_002147, intron 13 of 15) intron (NR_002147, intron 13 of 15) 22269 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 215.25-31 chr5 146649041 146649200 + 1.5 NA intron (NM_181678, intron 7 of 10) L2a|LINE|L2 -133007 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 205.5-54 chr7 82339725 82339917 + 1.5 NA intron (NM_000722, intron 2 of 38) MLT1D|LTR|ERVL-MaLR 103956 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 199.5-37 chr4 58483980 58484154 + 1.5 NA Intergenic L1MCa|LINE|L1 52261 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 166.25-48 chr5 20553541 20553794 + 1.5 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 22046 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 171.5-6 chr10 28594342 28594523 + 1.5 NA intron (NM_100486, intron 6 of 12) intron (NM_100486, intron 6 of 12) 61314 NM_016628 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 196.5-8 chr1 108895268 108895433 + 1.5 NA intron (NM_013296, intron 2 of 14) MER113A|DNA|hAT-Charlie 18365 NM_001321039 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 305-3 chr10 10776048 10776306 + 1.5 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 18737 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 314-5 chr13 113166734 113167071 + 1.5 NA intron (NM_003891, intron 6 of 7) intron (NM_003891, intron 6 of 7) 8248 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 317-3 chr14 62106819 62107222 + 1.5 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -10337 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 231-33 chr5 160135128 160135376 + 1.5 NA Intergenic Intergenic -15802 NM_001267035 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 143-24 chr13 85987046 85987141 + 1.5 NA Intergenic L1MD|LINE|L1 -187674 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 238.5-41 chr9 108635007 108635263 + 1.5 NA Intergenic Intergenic 220851 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 343.75-9 chr5 153958441 153958705 + 1.5 NA Intergenic Intergenic -59586 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 197-37 chr3 163198212 163198465 + 1.5 NA intron (NR_033945, intron 4 of 6) ERVL-int|LTR|ERVL 104963 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 247.5-10 chr15 47463685 47463890 + 1.5 NA intron (NM_001198999, intron 2 of 19) MLT1D|LTR|ERVL-MaLR -253718 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 178.5-52 chr4 32880367 32880640 + 1.5 NA Intergenic Intergenic 529465 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 290.25-7 chr15 63167261 63167589 + 1.5 NA Intergenic Intergenic -9948 NM_015920 51065 Hs.108957 NM_015920 ENSG00000185088 RPS27L - ribosomal protein S27 like protein-coding 168.75-54 chr7 13539842 13539968 + 1.5 NA Intergenic Intergenic 446609 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 231.75-30 chr8 48845527 48845741 + 1.5 NA Intergenic Charlie13a|DNA|hAT-Charlie 75795 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 281.75-9 chr2 109042735 109043165 + 1.5 NA Intergenic Intergenic -53730 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 241.75-21 chr3 178011122 178011364 + 1.5 NA Intergenic Intergenic 194378 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 226-23 chr4 172146868 172147151 + 1.5 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -333402 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 221-21 chr2 122153102 122153281 + 1.5 NA Intergenic Intergenic 397540 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 286-18 chr3 54859002 54859342 + 1.5 NA intron (NM_018398, intron 17 of 37) intron (NM_018398, intron 17 of 37) 42083 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 235.75-22 chr4 176131712 176131884 + 1.5 NA intron (NM_170710, intron 8 of 30) intron (NM_170710, intron 8 of 30) 63787 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 227.5-56 chr8 118858703 118858915 + 1.5 NA Intergenic Intergenic 93076 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 297.5-7 chr3 87399879 87400197 + 1.5 NA Intergenic Intergenic -123454 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 137.5-33 chr14 74012367 74012577 + 1.5 NA intron (NM_001321986, intron 2 of 16) intron (NM_001321986, intron 2 of 16) 6816 NM_001321987 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 196.5-61 chr6 64742169 64742386 + 1.5 NA intron (NM_001292009, intron 22 of 43) Tigger1|DNA|TcMar-Tigger -559141 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 135.75-61 chr22 34892525 34892701 + 1.5 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 105303 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 232.5-4 chr1 226011051 226011301 + 1.5 NA Intergenic Intergenic -11833 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 205.5-6 chr10 73087895 73088104 + 1.5 NA intron (NM_001142595, intron 1 of 15) L1MD|LINE|L1 8975 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 336-6 chr18 1328368 1328657 + 1.5 NA intron (NR_023926, intron 2 of 5) intron (NR_023926, intron 2 of 5) 31117 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 325.5-13 chr9 81669048 81669329 + 1.5 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 20347 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 250.5-20 chr21 15257265 15257515 + 1.5 NA Intergenic Intergenic -192390 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 190.5-22 chr12 92259272 92259502 + 1.5 NA Intergenic L1MDa|LINE|L1 113302 NR_135036 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 143.5-64 chr3 13974810 13974918 + 1.5 NA intron (NR_002223, intron 1 of 2) L1PBa|LINE|L1 37557 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 176.5-29 chr14 57414357 57414474 + 1.5 NA 3' UTR (NM_001011713, exon 5 of 5) 3' UTR (NM_001011713, exon 5 of 5) 23829 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 254.75-6 chr12 16687846 16688209 + 1.5 NA Intergenic Intergenic -79813 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 295-15 chr6 163168648 163168869 + 1.5 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 23244 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 298.5-3 chr1 104089443 104089890 + 1.5 NA Intergenic MIRc|SINE|MIR 16643 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 156.25-76 chr9 105908482 105908604 + 1.5 NA Intergenic Intergenic 214002 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 327-9 chr2 63885975 63886240 + 1.5 NA intron (NM_001001521, intron 6 of 9) intron (NM_001001521, intron 6 of 9) 44227 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 270-4 chr10 52700838 52701081 + 1.5 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 54445 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 218.25-26 chr19 29503956 29504216 + 1.5 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 21666 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 205.25-27 chr4 72258938 72259262 + 1.5 NA Intergenic ORSL-2b|DNA|hAT-Tip100 219968 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 128.25-58 chr5 20180955 20181074 + 1.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -124537 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 234.75-33 chr4 81392171 81392339 + 1.5 NA Intergenic Intergenic 79652 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 134.5-72 chr4 92824908 92825004 + 1.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 520557 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 203.75-33 chr5 109321932 109322241 + 1.5 NA intron (NR_149040, intron 1 of 3) MER50|LTR|ERV1 4283 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 229-12 chr14 54619379 54619655 + 1.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 51905 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 257.5-32 chr9 15162485 15162787 + 1.5 NA TTS (NM_001168342) TTS (NM_001168342) 87582 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 227-20 chr21 29837879 29838198 + 1.5 NA intron (NM_000830, intron 1 of 16) L3|LINE|CR1 89863 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 249.75-24 chr7 89484060 89484370 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -635185 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 182.25-30 chr20 53730399 53730683 + 1.5 NA Intergenic FLAM_C|SINE|Alu 122187 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 178.25-32 chr22 27422203 27422381 + 1.5 NA Intergenic L1ME3B|LINE|L1 111641 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 275.5-15 chr2 44866519 44866753 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 72252 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 285.5-4 chr12 71302015 71302363 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -137609 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 238.5-4 chr1 163040311 163040554 + 1.5 NA Intergenic MER115|DNA|hAT-Tip100 -28174 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 230.5-44 chr5 153458442 153458613 + 1.5 NA Intergenic Intergenic -31997 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 243.75-14 chr2 59626959 59627160 + 1.5 NA Intergenic Intergenic 409351 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 160.5-13 chr12 75875936 75876134 + 1.5 NA Intergenic L1PB1|LINE|L1 155741 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 237.75-23 chr2 105084831 105085008 + 1.5 NA intron (NM_182640, intron 5 of 10) intron (NM_182640, intron 5 of 10) 18025 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 245 chr1 14254456 14254761 + 1.5 NA Intergenic MamRep137|DNA|TcMar-Tigger 165365 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 221.75-28 chr8 54905118 54905265 + 1.5 NA Intergenic Intergenic -196837 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 202-21 chr5 60682517 60682824 + 1.5 NA intron (NM_001145208, intron 2 of 9) L1M2|LINE|L1 17496 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 280.5-19 chr21 27181430 27181730 + 1.5 NA Intergenic L2b|LINE|L2 -214492 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 130.75-10 chr1 225409649 225409740 + 1.5 NA intron (NM_194442, intron 10 of 13) intron (NM_194442, intron 10 of 13) 18344 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 229.75-13 chr2 139719455 139719634 + 1.5 NA Intergenic Intergenic 822220 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 122-5 chr1 113652539 113652635 + 1.5 NA intron (NM_001142782, intron 14 of 20) intron (NM_001142782, intron 14 of 20) 106568 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 292.5-10 chr5 82784482 82784767 + 1.5 NA Intergenic L2a|LINE|L2 -55531 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 167.25-65 chr5 127909708 127909837 + 1.5 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 173403 NR_152801 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 175-47 chr4 134697518 134697681 + 1.5 NA Intergenic Intergenic 273731 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 157-54 chr5 92660217 92660331 + 1.5 NA Intergenic Intergenic 911069 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 393-7 chrX 148285477 148285843 + 1.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -214957 NM_001169122 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 129.75-31 chr17 21904727 21904881 + 1.5 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 212281 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 189.25-33 chr4 70068597 70068945 + 1.5 NA intron (NR_003720, intron 1 of 12) intron (NR_003720, intron 1 of 12) 1385 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 238.5-14 chr15 100999361 100999650 + 1.5 NA intron (NM_024652, intron 6 of 33) intron (NM_024652, intron 6 of 33) 80148 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 193.5-35 chr21 28813820 28813998 + 1.5 NA Intergenic L1PA4|LINE|L1 71458 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 270-2 chr1 170300185 170300484 + 1.5 NA Intergenic Intergenic -16126 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 328-4 chr2 171281574 171281878 + 1.5 NA Intergenic Intergenic -50433 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 262.5-5 chr10 113955363 113955655 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -88357 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 200.25-9 chr10 58996227 58996470 + 1.5 NA Intergenic L1MB2|LINE|L1 -3170 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 244.5-22 chr3 60469067 60469281 + 1.5 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 148696 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 281-9 chr19 53264788 53265262 + 1.5 NA Intergenic Intergenic 2640 NM_173857 317703 Hs.553685 NM_173857 ENSG00000228567 VN1R4 V1RL4 vomeronasal 1 receptor 4 protein-coding 151-50 chr4 152522603 152522736 + 1.5 NA intron (NM_001349798, intron 2 of 13) MER20|DNA|hAT-Charlie 12364 NM_033632 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 286-3 chr1 183595494 183595909 + 1.5 NA Intergenic MLT1E1|LTR|ERVL-MaLR -4787 NM_001127651 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 193.5-47 chr3 169394009 169394271 + 1.5 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -53727 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 149.25-38 chr20 39738900 39739131 + 1.5 NA Intergenic Intergenic -265446 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 306-7 chr11 36685615 36685852 + 1.5 NA Intergenic Intergenic -87454 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 184.5-49 chr21 26865940 26866116 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -20619 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 239-13 chr13 69794851 69795108 + 1.5 NA intron (NM_001286725, intron 6 of 9) intron (NM_001286725, intron 6 of 9) -312234 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 190.5-7 chr10 13396886 13397093 + 1.5 NA Intergenic L1MB3|LINE|L1 -48691 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 132-77 chr8 141591085 141591253 + 1.5 NA Intergenic Intergenic -83939 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 305.25-16 chr7 35454027 35454384 + 1.5 NA Intergenic Intergenic 140350 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 187.75-43 chr5 85208175 85208374 + 1.5 NA Intergenic Intergenic -823394 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 173.75-23 chr20 15839752 15840070 + 1.5 NA intron (NM_001351663, intron 8 of 17) MIR|SINE|MIR 83403 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 254-4 chr14 51070768 51070987 + 1.5 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 24827 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 133.5-89 chr5 38061125 38061216 + 1.5 NA intron (NR_147009, intron 2 of 2) L2b|LINE|L2 35473 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 421 chr15 69731371 69731793 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -103652 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 311-18 chr9 101774928 101775158 + 1.5 NA Intergenic L1MEd|LINE|L1 -36463 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 240.75-19 chr2 144497492 144497696 + 1.5 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -22020 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 371.75-3 chr3 57419542 57419895 + 1.5 NA intron (NM_001366028, intron 36 of 73) L1ME3F|LINE|L1 124626 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 252-15 chr2 69875820 69876011 + 1.5 NA intron (NM_178439, intron 13 of 13) AluSc5|SINE|Alu -18041 NM_006857 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 228-26 chr3 32456031 32456327 + 1.5 NA TTS (NM_181472) TTS (NM_181472) 46673 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 234.75-21 chr2 125109929 125110236 + 1.5 NA Intergenic Intergenic 1007903 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 326-13 chr3 147659151 147659459 + 1.5 NA Intergenic L1MB3|LINE|L1 237978 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 186-50 chr7 4311982 4312151 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -177229 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 141.5-24 chr12 40165722 40165878 + 1.5 NA intron (NR_146526, intron 1 of 1) MADE1|DNA|TcMar-Mariner 9561 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 180.5-39 chr2 43638440 43638637 + 1.5 NA intron (NM_172069, intron 1 of 29) intron (NM_172069, intron 1 of 29) 1278 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 183-54 chr4 148140764 148140970 + 1.5 NA intron (NR_148974, intron 4 of 6) X6A_LINE|LINE|CR1 301547 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 247-23 chr5 125716242 125716532 + 1.5 NA Intergenic L2b|LINE|L2 223126 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 293.5-11 chr2 59241106 59241502 + 1.5 NA intron (NR_110219, intron 1 of 2) intron (NR_110219, intron 1 of 2) 23596 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 167-12 chr14 77887517 77887647 + 1.5 NA intron (NR_158988, intron 5 of 10) intron (NR_158988, intron 5 of 10) 87473 NM_001366489 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 170.75-52 chr5 3679239 3679421 + 1.5 NA Intergenic Intergenic 83498 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 245.25-16 chr2 117361293 117361643 + 1.5 NA Intergenic L1PB3|LINE|L1 -453223 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 387.25-4 chr2 48611221 48611847 + 1.5 NA intron (NM_172311, intron 3 of 10) intron (NM_172311, intron 3 of 10) -6246 NM_001193487 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 265.5-24 chr7 3411026 3411290 + 1.5 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 109906 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 221.5-43 chr7 1050003 1050254 + 1.5 NA intron (NM_001303473, intron 1 of 1) intron (NM_001303473, intron 1 of 1) -5242 NM_138445 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 134-22 chr12 124998325 124998454 + 1.5 NA intron (NM_080626, intron 1 of 2) L1MB5|LINE|L1 4744 NM_080626 140707 Hs.596464 NM_080626 ENSG00000184992 BRI3BP BNAS1|HCCR-1|HCCR-2|HCCRBP-1|HCCRBP-3|KG19 BRI3 binding protein protein-coding 198.5-21 chr19 37439728 37439941 + 1.5 NA intron (NM_152484, intron 3 of 5) L1MA3|LINE|L1 27610 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 143-5 chr10 48954086 48954279 + 1.5 NA intron (NM_020945, intron 51 of 61) L1M6|LINE|L1 31405 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 205.5-45 chr5 39185102 39185334 + 1.5 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 34345 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 193-43 chr5 66950346 66950672 + 1.5 NA intron (NM_015183, intron 3 of 27) L1MB3|LINE|L1 -8564 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 167.5-9 chr10 92661109 92661242 + 1.5 NA Intergenic L1M4|LINE|L1 -28780 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 269-12 chr22 34339147 34339451 + 1.5 NA Intergenic Intergenic -416411 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 417.5-6 chrX 38008667 38009166 + 1.5 NA intron (NM_138780, intron 1 of 16) L2a|LINE|L2 2363 NM_138780 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 413.5 chr16 75931634 75931989 + 1.5 NA Intergenic L1MEg|LINE|L1 -205321 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 252.75-18 chr3 8407771 8408000 + 1.5 NA intron (NR_033378, intron 3 of 3) MIRc|SINE|MIR 93773 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 295.5-11 chr2 23521763 23522116 + 1.5 NA intron (NM_052920, intron 2 of 13) Tigger15a|DNA|TcMar-Tigger 136760 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 116-54 chr4 188328136 188328240 + 1.5 NA Intergenic Intergenic -127390 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 333-15 chr9 28719425 28719773 + 1.5 NA promoter-TSS (NM_152570) promoter-TSS (NM_152570) -294 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 201.5-5 chr1 195612820 195613079 + 1.5 NA Intergenic L1PB4|LINE|L1 475766 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 234.75-16 chr14 70324879 70325164 + 1.5 NA TTS (NM_001202547) TTS (NM_001202547) 34662 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 162-35 chr3 127473617 127473792 + 1.5 NA Intergenic Intergenic 64076 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 298-15 chr2 208845059 208845355 + 1.5 NA Intergenic Intergenic 302565 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 363-8 chr5 107451041 107451547 + 1.5 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 219643 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 303.5-13 chr4 88721354 88721622 + 1.5 NA intron (NR_002806, intron 2 of 4) intron (NR_002806, intron 2 of 4) 11699 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 214.5-55 chr7 35498946 35499117 + 1.5 NA Intergenic Intergenic 185176 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 209.5-17 chr2 139697475 139697701 + 1.5 NA Intergenic LTR105_Mam|LTR|ERVL 800264 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 358.5-4 chr16 31317695 31317979 + 1.5 NA intron (NM_001145808, intron 14 of 29) L1M4c|LINE|L1 -37339 NM_000887 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 222-3 chr1 91521486 91521756 + 1.5 NA intron (NM_001134420, intron 11 of 11) intron (NM_001134420, intron 11 of 11) 20513 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 342-6 chr15 96457159 96457510 + 1.5 NA Intergenic Intergenic 123569 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 270.75-11 chr20 54052848 54053104 + 1.5 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 6044 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 138.25-58 chr3 82281385 82281477 + 1.5 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 295289 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 215.25-13 chr16 76014657 76014923 + 1.5 NA Intergenic L1PA5|LINE|L1 -262611 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 178.5-93 chr8 139359526 139359724 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL 343498 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 166.5-58 chr2 124709975 124710159 + 1.5 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 684780 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 258.5-14 chr4 65208343 65208546 + 1.5 NA Intergenic L1ME4a|LINE|L1 -203944 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 234.75-4 chr10 66058329 66058558 + 1.5 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 487018 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 156.75-92 chr9 69640175 69640347 + 1.5 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 32110 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 178-27 chr2 156626050 156626244 + 1.5 NA Intergenic Intergenic 189768 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 249-13 chr17 65409434 65409610 + 1.5 NA Intergenic L1MA5|LINE|L1 -48019 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 338.5-7 chr4 151145876 151146209 + 1.5 NA intron (NM_001009555, intron 11 of 20) intron (NM_001009555, intron 11 of 20) 29510 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 220.5-26 chr2 59742855 59743070 + 1.5 NA Intergenic Intergenic 525254 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 300-2 chr1 210328958 210329259 + 1.5 NA promoter-TSS (NM_001170580) promoter-TSS (NM_001170580) 202 NM_001170587 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 167.25-73 chr7 7839800 7840020 + 1.5 NA intron (NM_001302350, intron 4 of 4) L2|LINE|L2 -121303 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 279-2 chr1 115352601 115352925 + 1.5 NA intron (NR_157569, intron 1 of 1) MIR|SINE|MIR -14527 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 231.75-8 chr14 74175145 74175516 + 1.5 NA intron (NM_001024674, intron 5 of 5) AluJr|SINE|Alu -64119 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 298.5-7 chr12 6575630 6575882 + 1.5 NA intron (NM_001273, intron 37 of 39) L2c|LINE|L2 5853 NR_003012 677780 Hs.689692 NR_003012 ENSG00000251898 SCARNA11 ACA57 small Cajal body-specific RNA 11 ncRNA 308.5-5 chr13 68934975 68935271 + 1.5 NA Intergenic Intergenic -49798 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 252.75-6 chr14 38323039 38323223 + 1.5 NA Intergenic L1MA9|LINE|L1 -67038 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 220.25-14 chr12 63430472 63430831 + 1.5 NA Intergenic Intergenic 237842 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 323.5 chr1 119723511 119723824 + 1.5 NA intron (NM_006623, intron 3 of 11) intron (NM_006623, intron 3 of 11) 11733 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 299.5-6 chr15 62412887 62413149 + 1.5 NA Intergenic Intergenic 69989 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 192-4 chr10 33246305 33246484 + 1.5 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 88273 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 184.5-74 chr7 138945136 138945281 + 1.5 NA intron (NM_020910, intron 1 of 19) MER5B|DNA|hAT-Charlie 36181 NM_001164665 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 207-28 chr2 104160893 104161036 + 1.5 NA Intergenic Intergenic 247368 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 164.25-54 chr7 46627029 46627215 + 1.5 NA Intergenic MIR3|SINE|MIR 70000 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 171-32 chr20 40263866 40264046 + 1.5 NA Intergenic L1ME3A|LINE|L1 259495 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 290-15 chr6 62874257 62874627 + 1.5 NA Intergenic SATR1|Satellite|Satellite 445535 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 347.5-7 chr15 63218174 63218435 + 1.5 NA intron (NM_016530, intron 1 of 7) MIRb|SINE|MIR 28698 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 262.75-2 chr10 22339507 22339808 + 1.5 NA Intergenic Intergenic -5788 NM_001253855 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 145-61 chr7 55352116 55352242 + 1.5 NA Intergenic LTR24B|LTR|ERV1 -13269 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 359.5-2 chr11 58400326 58400596 + 1.5 NA Intergenic Intergenic 2948 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 297.25-11 chr17 73247563 73247839 + 1.5 NA TTS (NM_001129885) TTS (NM_001129885) 14179 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 196-37 chr5 160443204 160443346 + 1.5 NA Intergenic MLT1O|LTR|ERVL-MaLR 21365 NM_001282383 9232 Hs.350966 NM_004219 ENSG00000164611 PTTG1 EAP1|HPTTG|PTTG|TUTR1 PTTG1 regulator of sister chromatid separation, securin protein-coding 243.25-19 chr8 98856423 98856698 + 1.5 NA intron (NM_001256312, intron 3 of 12) L1MB8|LINE|L1 -30872 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 202.5-8 chr13 55533297 55533487 + 1.5 NA Intergenic Intergenic 358938 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 194.5-8 chr10 65427445 65427702 + 1.5 NA Intergenic L1MEf|LINE|L1 -143852 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 125.25-69 chr5 148113675 148113794 + 1.5 NA intron (NM_006846, intron 20 of 32) intron (NM_006846, intron 20 of 32) 49754 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 272-25 chr8 26666716 26667103 + 1.5 NA Intergenic Intergenic 88504 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 245.5-36 chr7 44126952 44127146 + 1.5 NA Intergenic L1M4c|LINE|L1 -3479 NM_006230 5425 Hs.306791 NM_006230 ENSG00000106628 POLD2 - DNA polymerase delta 2, accessory subunit protein-coding 229.5-35 chr4 59025207 59025475 + 1.5 NA intron (NR_133942, intron 1 of 1) intron (NR_133942, intron 1 of 1) 11768 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 217.5-21 chr2 175723548 175723760 + 1.5 NA Intergenic L1MEc|LINE|L1 278613 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 203.25-11 chr11 81498510 81498771 + 1.5 NA Intergenic MER50|LTR|ERV1 392196 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 206.75-5 chr10 112967483 112967814 + 1.5 NA intron (NM_001367943, intron 4 of 14) AluSp|SINE|Alu 17398 NM_001198530 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 224-20 chr3 58478161 58478346 + 1.5 NA Intergenic L1MA4|LINE|L1 -13843 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 173-58 chr9 134810493 134810706 + 1.5 NA intron (NM_001278074, intron 44 of 65) intron (NM_001278074, intron 44 of 65) 38770 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 260.25-3 chr11 77776102 77776409 + 1.5 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 44579 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 145.5-29 chr14 61150664 61150826 + 1.5 NA Intergenic Intergenic 130593 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 323-14 chr3 180729657 180730059 + 1.5 NA intron (NR_109986, intron 10 of 13) intron (NR_109986, intron 10 of 13) -50369 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 250-32 chr8 133135631 133135890 + 1.5 NA TTS (NM_003235) TTS (NM_003235) -33158 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 287.5-2 chr1 94231424 94231747 + 1.5 NA exon (NM_001328666, exon 2 of 23) exon (NM_001328666, exon 2 of 23) 5999 NM_001328667 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 140.25-88 chr8 19568612 19568730 + 1.5 NA intron (NM_001354495, intron 2 of 9) intron (NM_001354495, intron 2 of 9) 33874 NM_001354492 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 188.75-35 chr4 115746770 115747185 + 1.5 NA Intergenic L2|LINE|L2 -552748 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 233.25-34 chr8 16527478 16527741 + 1.5 NA Intergenic Intergenic -334818 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 179-16 chr12 48497033 48497174 + 1.5 NA TTS (NM_152319) TTS (NM_152319) 14605 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 242.5-7 chr13 112172366 112172625 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -11785 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 298.5-5 chr11 4824919 4825183 + 1.5 NA Intergenic Intergenic 3730 NM_001004753 119694 Hs.553562 NM_001004753 ENSG00000176925 OR51F2 OR11-23 olfactory receptor family 51 subfamily F member 2 protein-coding 189-31 chr20 51745343 51745588 + 1.5 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 22925 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 316.5-4 chr15 35150969 35151389 + 1.5 NA Intergenic Intergenic -65771 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 237.75-7 chr10 92734087 92734308 + 1.5 NA Intergenic AluSx1|SINE|Alu 44242 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 268.5-8 chr13 33965325 33965611 + 1.5 NA intron (NM_181558, intron 8 of 8) Tigger3a|DNA|TcMar-Tigger 147319 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 318-16 chr4 108939692 108940127 + 1.5 NA intron (NM_198721, intron 9 of 36) intron (NM_198721, intron 9 of 36) -176856 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 312.5-16 chr9 18594433 18594857 + 1.5 NA intron (NM_052866, intron 4 of 12) L1MA4|LINE|L1 21339 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 188.5-46 chr5 148642409 148642547 + 1.5 NA intron (NR_104445, intron 1 of 7) intron (NR_104445, intron 1 of 7) -5417 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 117.75-12 chr11 69795027 69795162 + 1.5 NA Intergenic L1MC3|LINE|L1 -19753 NM_002007 2249 Hs.1755 NM_002007 ENSG00000075388 FGF4 FGF-4|HBGF-4|HST|HST-1|HSTF-1|HSTF1|K-FGF|KFGF fibroblast growth factor 4 protein-coding 190.5-33 chr19 29427346 29427506 + 1.5 NA intron (NR_040029, intron 2 of 9) MIR|SINE|MIR 98326 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 200.75-41 chr7 95368898 95369077 + 1.5 NA intron (NM_000940, intron 4 of 8) intron (NM_000940, intron 4 of 8) 27388 NM_000940 5446 Hs.440967 NM_000940 ENSG00000105852 PON3 - paraoxonase 3 protein-coding 141-43 chr2 203508368 203508543 + 1.5 NA intron (NM_001329728, intron 1 of 15) L1MC4|LINE|L1 26846 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 207.5-24 chr18 58515753 58515934 + 1.5 NA intron (NM_052947, intron 9 of 12) intron (NM_052947, intron 9 of 12) -64691 NR_039899 100616357 NR_039899 ENSG00000207778 MIR3591 - microRNA 3591 ncRNA 240.5-10 chr10 76977660 76977862 + 1.5 NA non-coding (NR_120655, exon 3 of 4) non-coding (NR_120655, exon 3 of 4) 89717 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 178.5-62 chr5 59596364 59596513 + 1.5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -8813 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 573.5 chr2 51591391 51591930 + 1.5 NA intron (NR_135237, intron 5 of 10) MIRb|SINE|MIR 559059 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 296.5-11 chr15 67378423 67378862 + 1.5 NA intron (NM_001031715, intron 10 of 20) intron (NM_001031715, intron 10 of 20) -123444 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 196.5-72 chr8 78188659 78188882 + 1.5 NA Intergenic L1M5|LINE|L1 -327570 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 210-36 chr8 10034895 10035100 + 1.5 NA Intergenic L1PB3|LINE|L1 -19295 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 136.5-74 chr3 157364312 157364456 + 1.5 NA exon (NM_001167911, exon 8 of 13) exon (NM_001167911, exon 8 of 13) -72466 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 210.75-12 chr14 95957686 95957961 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 81051 NR_038861 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 398.5-6 chr9 86814777 86815070 + 1.5 NA Intergenic Intergenic 132583 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 292.75-14 chr6 120256936 120257277 + 1.5 NA Intergenic L1ME1|LINE|L1 241927 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 142-34 chr2 213185544 213185735 + 1.5 NA Intergenic MER102c|DNA|hAT-Charlie -17929 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 277.5-18 chr5 107291593 107291822 + 1.5 NA Intergenic MER30|DNA|hAT-Charlie -280693 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 276.75-21 chr8 83765509 83765945 + 1.5 NA Intergenic Intergenic 361969 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 287-9 chr2 230380487 230380777 + 1.5 NA intron (NM_001352892, intron 7 of 18) L1ME2z|LINE|L1 -35524 NM_001206703 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 146.25-33 chr18 45008435 45008585 + 1.5 NA intron (NM_015559, intron 4 of 5) intron (NM_015559, intron 4 of 5) -38344 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 241.5-17 chr2 146411744 146411978 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -175196 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 285.75-5 chr10 111895576 111895833 + 1.5 NA Intergenic L1MD1|LINE|L1 288061 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 183-50 chr4 72531007 72531220 + 1.5 NA intron (NM_014243, intron 3 of 21) L2a|LINE|L2 38108 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 316-17 chr6 117444139 117444544 + 1.5 NA Intergenic Intergenic -18486 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 205.5-18 chr16 7487299 7487598 + 1.5 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 154603 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 180.75-47 chr4 84867336 84867497 + 1.5 NA intron (NM_014991, intron 3 of 67) intron (NM_014991, intron 3 of 67) -98200 NR_152771 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 264-11 chr2 75234966 75235279 + 1.5 NA Intergenic L2c|LINE|L2 -35602 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 158.5-47 chr18 10815637 10815788 + 1.5 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -56063 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 132-67 chr6 52888656 52888815 + 1.5 NA Intergenic Intergenic 20963 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 191.25-42 chr3 94027990 94028174 + 1.5 NA intron (NM_001001850, intron 1 of 1) intron (NM_001001850, intron 1 of 1) 515 NM_001001850 415117 Hs.679768 NM_001001850 ENSG00000178750 STX19 - syntaxin 19 protein-coding 183.5-19 chr12 66624258 66624392 + 1.5 NA intron (NM_001366724, intron 1 of 23) intron (NM_001366724, intron 1 of 23) 54751 NM_021150 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 216.5-36 chr6 98349591 98349843 + 1.5 NA Intergenic MIR|SINE|MIR 325186 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 187.5-79 chr7 146342674 146342894 + 1.5 NA Intergenic L1M5|LINE|L1 -431487 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 133.5 chr1 14056697 14056795 + 1.5 NA Intergenic MIRb|SINE|MIR 307331 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 157-61 chr8 23181619 23181753 + 1.5 NA Intergenic LOR1-int|LTR|ERV1 -17659 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD TNF receptor superfamily member 10d protein-coding 212.5-18 chr16 48634468 48634694 + 1.5 NA Intergenic Intergenic -24401 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 198.5-50 chr7 7949185 7949408 + 1.5 NA TTS (NR_110018) TTS (NR_110018) 19456 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 168-23 chr13 36452930 36453057 + 1.5 NA Intergenic Intergenic 20498 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 159.5-2 chr1 80327965 80328119 + 1.5 NA Intergenic Intergenic -207713 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 200.5-9 chr10 43542498 43542760 + 1.5 NA Intergenic Intergenic 25830 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 274.75-12 chr20 49746173 49746431 + 1.5 NA Intergenic (TCTCTC)n|Simple_repeat|Simple_repeat -32424 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 270-30 chr8 139564021 139564292 + 1.5 NA Intergenic Intergenic 138967 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 172-10 chr12 21765415 21765661 + 1.5 NA 3' UTR (NM_004982, exon 3 of 3) 3' UTR (NM_004982, exon 3 of 3) 9168 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 175-4 chr10 57328127 57328251 + 1.5 NA Intergenic Intergenic -23630 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 256 chr1 73112133 73112419 + 1.5 NA Intergenic Intergenic -193894 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 164.25-42 chr22 33523856 33524077 + 1.5 NA intron (NM_133642, intron 6 of 14) L1MD2|LINE|L1 -87297 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 250.5-29 chr7 31386488 31386986 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -46011 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 218.5-4 chr1 166766329 166766610 + 1.5 NA Intergenic Intergenic -73006 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 261-23 chr2 38977155 38977379 + 1.5 NA Intergenic MER5B|DNA|hAT-Charlie -16923 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 116.25-41 chr18 76113467 76113585 + 1.5 NA Intergenic Intergenic -9472 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 237.75-41 chr6 73818552 73818759 + 1.5 NA intron (NM_001159588, intron 30 of 31) intron (NM_001159588, intron 30 of 31) 122452 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 321-12 chr7 159105879 159106109 + 1.5 NA intron (NR_130758, intron 3 of 12) MIRb|SINE|MIR -8790 NM_001308259 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 121.75-93 chr8 133346454 133346690 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -49268 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 224.75-23 chrX 116513030 116513255 + 1.5 NA Intergenic L1M1|LINE|L1 -50166 NM_001017978 203413 Hs.97892 NM_001017978 ENSG00000204019 CT83 CXorf61|KK-LC-1|KKLC1 cancer/testis antigen 83 protein-coding 216-27 chr3 3546155 3546498 + 1.5 NA Intergenic Intergenic -253105 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 442.25 chr22 25691658 25692231 + 1.5 NA intron (NM_001362778, intron 11 of 19) intron (NM_001362778, intron 11 of 19) -50244 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 183.25-49 chr7 78902021 78902358 + 1.5 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -106799 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 134-45 chr20 50660246 50660419 + 1.5 NA TTS (NR_111906) TTS (NR_111906) 14861 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 155-51 chr6 91902439 91902684 + 1.5 NA Intergenic Intergenic -212133 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 230.5-45 chr6 2008208 2008448 + 1.5 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 167663 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 184.5-71 chr7 54674716 54674907 + 1.5 NA Intergenic Intergenic 84400 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 308.5-2 chr10 104936146 104936414 + 1.5 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -270064 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 298.5-17 chr5 6063781 6064055 + 1.5 NA Intergenic L1MC1|LINE|L1 273374 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 159-33 chr2 36764929 36765072 + 1.5 NA intron (NM_001177969, intron 6 of 14) intron (NM_001177969, intron 6 of 14) 68293 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 267.25-2 chr12 1127729 1128019 + 1.5 NA intron (NR_027948, intron 6 of 19) L1MEd|LINE|L1 100126 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 198.5-13 chr14 51187523 51187827 + 1.5 NA Intergenic Intergenic -52572 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 327-6 chr14 55408133 55408599 + 1.5 NA intron (NM_014924, intron 1 of 9) AluJb|SINE|Alu 3492 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 304.5-4 chr14 87177837 87178054 + 1.5 NA Intergenic Intergenic 272167 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 351.25-3 chr8 102759975 102760360 + 1.5 NA Intergenic L1ME4a|LINE|L1 -46655 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 346.75-9 chr8 133254437 133254969 + 1.5 NA intron (NM_001135242, intron 8 of 15) intron (NM_001135242, intron 8 of 15) 42549 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 232-23 chr5 166955652 166955903 + 1.5 NA Intergenic L1MB8|LINE|L1 -29407 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 138.5-47 chr17 59734320 59734446 + 1.5 NA intron (NM_001329402, intron 2 of 10) MER44B|DNA|TcMar-Tigger 26729 NM_030938 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 157.75-23 chr13 103812969 103813123 + 1.5 NA Intergenic Intergenic 387846 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 161.5-8 chr1 221764245 221764425 + 1.5 NA Intergenic L1MC3|LINE|L1 -22159 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 164.5-52 chr3 76164226 76164390 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -378759 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 332.75-5 chr2 99748958 99749476 + 1.5 NA intron (NM_001025108, intron 8 of 23) L1MA9|LINE|L1 -259200 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 260-30 chr6 120047981 120048310 + 1.5 NA Intergenic L1MC3|LINE|L1 32966 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 203-18 chr2 39879758 39879966 + 1.5 NA Intergenic Intergenic -37772 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 336.75-2 chr16 57226294 57226543 + 1.5 NA intron (NM_001305164, intron 10 of 14) MER41B|LTR|ERV1 -18841 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 331.5-2 chr11 60558605 60558945 + 1.5 NA Intergenic L1MEg|LINE|L1 43383 NM_001100909 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 196.5-16 chr10 63418677 63418909 + 1.5 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -11782 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 149.25-24 chr14 38242416 38242532 + 1.5 NA Intergenic Intergenic 13619 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 129.5-58 chr3 8387026 8387142 + 1.5 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 114574 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 362.5-6 chr12 65972775 65973044 + 1.5 NA Intergenic MIR3|SINE|MIR 50817 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 326.25-6 chr18 65870824 65871152 + 1.5 NA intron (NM_001362438, intron 11 of 11) intron (NM_001362438, intron 11 of 11) 119976 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 202.5-52 chr7 92627814 92627969 + 1.5 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -37501 NM_152789 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 138-73 chr7 14301309 14301505 + 1.5 NA intron (NM_001350717, intron 22 of 24) L2a|LINE|L2 -309982 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 186-33 chr21 20263585 20263839 + 1.5 NA Intergenic MADE2|DNA|TcMar-Mariner -5027 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 214-30 chr4 36973030 36973263 + 1.5 NA Intergenic L2b|LINE|L2 -28633 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 230.25-26 chr6 62342982 62343230 + 1.5 NA Intergenic L1P4a|LINE|L1 -56879 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 190.5-75 chr9 97029649 97029823 + 1.5 NA TTS (NM_001333) TTS (NM_001333) 9406 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 123-71 chr9 113144095 113144223 + 1.5 NA Intergenic Intergenic -6848 NM_001860 1318 Hs.24030 NM_001860 ENSG00000136867 SLC31A2 COPT2|CTR2|hCTR2 solute carrier family 31 member 2 protein-coding 207.5-65 chrX 82888785 82889081 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -619357 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 147.5-5 chr1 115996341 115996506 + 1.5 NA intron (NM_018420, intron 2 of 11) L1MD1|LINE|L1 -19147 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 230.5-51 chr8 4818226 4818622 + 1.5 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 176490 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 237-25 chr4 57548659 57548953 + 1.5 NA Intergenic AluJb|SINE|Alu 122934 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 233-17 chr16 70475583 70475788 + 1.5 NA exon (NM_145059, exon 20 of 24) exon (NM_145059, exon 20 of 24) 21090 NM_145059 197258 Hs.7907 NM_145059 ENSG00000157353 FCSK 1110046B12Rik|CDGF2|FUK fucose kinase protein-coding 190.5-15 chr11 16076321 16076552 + 1.5 NA intron (NM_017508, intron 8 of 14) L1PA15|LINE|L1 -106815 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 247.5-47 chr8 128394086 128394270 + 1.5 NA Intergenic Intergenic 170501 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 334.5 chr1 71540879 71541328 + 1.5 NA intron (NM_173808, intron 6 of 6) MSTA|LTR|ERVL-MaLR 295909 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 262.5-4 chr10 67012646 67012885 + 1.5 NA promoter-TSS (NR_111911) promoter-TSS (NR_111911) 499 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 128-20 chr16 59470840 59470947 + 1.5 NA Intergenic MIR|SINE|MIR 284298 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 164.5-6 chr1 246761018 246761144 + 1.5 NA intron (NM_016002, intron 9 of 11) intron (NM_016002, intron 9 of 11) -28536 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 278.25-24 chr8 135383367 135383704 + 1.5 NA Intergenic L1PREC2|LINE|L1 -73921 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 212.5-47 chr5 149717841 149718181 + 1.5 NA Intergenic MIR3|SINE|MIR -12299 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 255.5-2 chr1 26710605 26710903 + 1.5 NA intron (NM_139135, intron 1 of 19) intron (NM_139135, intron 1 of 19) 14739 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 158-42 chr3 83671383 83671495 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 1198136 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 173.25-46 chr3 111701557 111701739 + 1.5 NA intron (NM_001185106, intron 1 of 4) intron (NM_001185106, intron 1 of 4) -24215 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 182.5-38 chr22 28103590 28103814 + 1.5 NA intron (NM_001145418, intron 8 of 22) intron (NM_001145418, intron 8 of 22) -183090 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 143.25-18 chr12 30019745 30019854 + 1.5 NA Intergenic L1P4|LINE|L1 -235040 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 335-4 chr2 229142138 229142514 + 1.5 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 89766 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 194.75-14 chr15 50271912 50272152 + 1.5 NA Intergenic Intergenic -6306 NM_001306146 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 156-8 chr1 231562257 231562433 + 1.5 NA intron (NR_028398, intron 3 of 10) intron (NR_028398, intron 3 of 10) 33676 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 118-15 chr11 90367672 90367797 + 1.5 NA intron (NR_104190, intron 1 of 6) AluYj4|SINE|Alu 116502 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 255.5-13 chr2 56301886 56302255 + 1.5 NA intron (NM_001348516, intron 2 of 2) AluSx1|SINE|Alu -116300 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 236.25-13 chr18 38250277 38250510 + 1.5 NA Intergenic Tigger19b|DNA|TcMar-Tigger 593258 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 211.75-9 chr11 40547559 40547941 + 1.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -254620 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 150.5-67 chr4 69688933 69689091 + 1.5 NA Intergenic Intergenic -35765 NM_001252274 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 191.25-53 chr6 45885701 45885872 + 1.5 NA Intergenic L3|LINE|CR1 51811 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 182.75-47 chr6 12929342 12929542 + 1.5 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -27914 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 262.25-6 chr14 50913899 50914138 + 1.5 NA intron (NM_002863, intron 12 of 19) intron (NM_002863, intron 12 of 19) 30465 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 169.75-21 chr14 34700519 34700797 + 1.5 NA Intergenic Intergenic 13159 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 140.25-54 chr3 74861004 74861106 + 1.5 NA Intergenic Intergenic -339915 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 158-70 chr9 38463815 38463938 + 1.5 NA Intergenic L1ME1|LINE|L1 -39422 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 318.5-5 chr11 111225114 111225375 + 1.5 NA Intergenic L1MA5A|LINE|L1 -20481 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 226.5-7 chr10 64053613 64053877 + 1.5 NA Intergenic Intergenic -531855 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 241.5-4 chr10 70084152 70084322 + 1.5 NA intron (NM_018649, intron 2 of 8) intron (NM_018649, intron 2 of 8) 31391 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 213-7 chr1 206728156 206728369 + 1.5 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) -42511 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 317.5-4 chr14 20000303 20000710 + 1.5 NA Intergenic Intergenic -1556 NM_001348271 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 221.5-47 chr7 55993685 55993925 + 1.5 NA intron (NM_001202469, intron 5 of 7) intron (NM_001202469, intron 5 of 7) 29220 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 149.5-28 chr12 95582060 95582186 + 1.5 NA Intergenic Intergenic -30647 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 263-14 chr20 31326993 31327213 + 1.5 NA Intergenic L1MA9|LINE|L1 -18518 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 242-39 chr8 131600422 131600681 + 1.5 NA Intergenic L1PA7|LINE|L1 -303542 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 265-6 chr13 50609767 50610054 + 1.5 NA Intergenic Intergenic -82461 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 308.5-13 chr7 21510211 21510650 + 1.5 NA intron (NM_003112, intron 5 of 5) intron (NM_003112, intron 5 of 5) -32609 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 210-46 chr9 26383679 26383896 + 1.5 NA Intergenic Intergenic 317112 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 193-8 chr1 247553766 247553997 + 1.5 NA intron (NM_001281835, intron 3 of 5) L1M5|LINE|L1 4747 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 120.75-56 chr2 216448346 216448512 + 1.5 NA intron (NM_001127207, intron 11 of 17) L2|LINE|L2 35664 NM_001127207 50485 Hs.516674 NM_014140 ENSG00000138375 SMARCAL1 HARP|HHARP SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 protein-coding 215.25-27 chr5 35213255 35213454 + 1.5 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 17133 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 158-23 chr16 73731603 73731780 + 1.5 NA Intergenic Intergenic 344886 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 141.5-21 chr12 3537370 3537570 + 1.5 NA intron (NM_019854, intron 1 of 9) L1ME4a|LINE|L1 -44651 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 217.5-27 chr20 49663727 49664025 + 1.5 NA intron (NM_004776, intron 1 of 8) L1MC5a|LINE|L1 50002 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 182-20 chr2 3713265 3713438 + 1.5 NA intron (NM_001287444, intron 2 of 10) intron (NM_001287444, intron 2 of 10) 6509 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 280.5-13 chr2 17897572 17897936 + 1.5 NA intron (NM_002252, intron 1 of 2) L1PA16|LINE|L1 19087 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 235.5-20 chr14 71954006 71954251 + 1.5 NA intron (NM_001370288, intron 1 of 16) L1MCa|LINE|L1 20601 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 204.75-23 chr2 26199449 26199594 + 1.5 NA intron (NM_000182, intron 13 of 19) intron (NM_000182, intron 13 of 19) 18805 NM_001191033 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 361.75-7 chr8 84315632 84315983 + 1.5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -99677 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 235.5-61 chr9 103020716 103020920 + 1.5 NA Intergenic Intergenic 25485 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 184-44 chr5 45425523 45425703 + 1.5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 270767 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 120-60 chr3 41115706 41115827 + 1.5 NA Intergenic LTR79|LTR|ERVL -83739 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 114-75 chr6 83105628 83105732 + 1.5 NA intron (NM_015018, intron 4 of 38) intron (NM_015018, intron 4 of 38) 38014 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 147.5-65 chr4 97791122 97791303 + 1.5 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 352264 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 235.5-19 chr14 64996715 64997148 + 1.5 NA intron (NM_002028, intron 1 of 11) L1ME3G|LINE|L1 10036 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 221-11 chr11 5568012 5568203 + 1.5 NA Intergenic Intergenic -12770 NM_001005162 340980 Hs.553704 NM_001005162 ENSG00000187747 OR52B6 OR11-47 olfactory receptor family 52 subfamily B member 6 protein-coding 255-20 chr5 28221410 28221728 + 1.5 NA Intergenic Intergenic 66096 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 249-11 chr17 3789798 3790097 + 1.5 NA intron (NM_002208, intron 1 of 30) L1MC5a|LINE|L1 11241 NM_002208 3682 Hs.513867 NM_002208 ENSG00000083457 ITGAE CD103|HUMINAE integrin subunit alpha E protein-coding 171-38 chr3 107689714 107689865 + 1.5 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 166827 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 225-17 chr2 190807311 190807595 + 1.5 NA Intergenic Intergenic -73368 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 246.75-12 chr18 9925841 9926042 + 1.5 NA intron (NM_194434, intron 1 of 5) intron (NM_194434, intron 1 of 5) 11925 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 205.5-17 chr15 86007564 86007728 + 1.5 NA Intergenic Intergenic -71974 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 142.5-47 chr22 40782301 40782454 + 1.5 NA intron (NR_104235, intron 5 of 10) intron (NR_104235, intron 5 of 10) 31581 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 239.5-9 chr14 49900170 49900410 + 1.5 NA Intergenic Intergenic 7208 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 267.5-3 chr10 59588740 59589097 + 1.5 NA Intergenic MER66C|LTR|ERV1 120973 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 113-21 chr12 65557854 65557975 + 1.5 NA promoter-TSS (NR_135033) promoter-TSS (NR_135033) -603 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 135.5-106 chr8 112690001 112690169 + 1.5 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 46592 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 266.25-12 chr2 61012096 61012401 + 1.5 NA intron (NM_144709, intron 1 of 17) HAL1ME|LINE|L1 4964 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 197.25-59 chr8 14340600 14340778 + 1.5 NA intron (NM_001322881, intron 2 of 6) L1MEg|LINE|L1 512821 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 219.75-20 chr2 155036440 155036916 + 1.5 NA Intergenic Intergenic 337983 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 259.25-12 chr8 113733837 113734036 + 1.5 NA Intergenic MIRc|SINE|MIR -296997 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 139-19 chr14 50152387 50152575 + 1.5 NA intron (NM_006939, intron 13 of 22) intron (NM_006939, intron 13 of 22) -35909 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 125.25-81 chr8 20080406 20080521 + 1.5 NA Intergenic L1ME4b|LINE|L1 102673 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 231-41 chr8 56888766 56888993 + 1.5 NA Intergenic Intergenic 104988 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 207.5-63 chr9 76770784 76770989 + 1.5 NA intron (NR_132313, intron 1 of 2) intron (NR_132313, intron 1 of 2) 6450 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 149.5-19 chr12 15599854 15599990 + 1.5 NA Intergenic L3|LINE|CR1 53311 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 153.75-8 chr1 183208137 183208296 + 1.5 NA intron (NM_005562, intron 2 of 22) intron (NM_005562, intron 2 of 22) 21952 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 275 chr1 66518557 66518760 + 1.5 NA Intergenic Intergenic -14935 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 175-58 chr8 77906743 77907026 + 1.5 NA Intergenic Intergenic 456187 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 235.5-3 chr1 77682129 77682441 + 1.5 NA intron (NM_001308237, intron 1 of 13) intron (NM_001308237, intron 1 of 13) 373 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 197-22 chr2 15220949 15221122 + 1.5 NA intron (NM_015909, intron 47 of 51) intron (NM_015909, intron 47 of 51) 340299 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 174-17 chr16 57556475 57556641 + 1.5 NA intron (NM_153837, intron 1 of 11) L1ME1|LINE|L1 13915 NM_153837 221188 Hs.187884 NM_153837 ENSG00000159618 ADGRG5 GPR114|PGR27 adhesion G protein-coupled receptor G5 protein-coding 129-76 chr8 20269194 20269364 + 1.5 NA intron (NM_021020, intron 1 of 3) intron (NM_021020, intron 1 of 3) 4256 NM_001362884 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 152-67 chr8 130697942 130698082 + 1.5 NA Intergenic Intergenic -254338 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 115.5-23 chr12 14768523 14768609 + 1.5 NA Intergenic Intergenic 2565 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 176.25-31 chr18 54345073 54345234 + 1.5 NA intron (NM_139171, intron 4 of 7) L1MB8|LINE|L1 9420 NR_138549 147323 Hs.438779 NM_139171 ENSG00000174448 STARD6 - StAR related lipid transfer domain containing 6 protein-coding 201.75-25 chr3 114116601 114116884 + 1.5 NA Intergenic L1M5|LINE|L1 60005 NM_001256837 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 249-17 chr19 56390177 56390439 + 1.5 NA intron (NM_001320371, intron 3 of 4) intron (NM_001320371, intron 3 of 4) 3226 NM_001320371 147948 Hs.244391 NM_144690 ENSG00000018869 ZNF582 - zinc finger protein 582 protein-coding 164-8 chr10 92596751 92596888 + 1.5 NA intron (NM_004523, intron 1 of 21) L1MB3|LINE|L1 3689 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 157.5-58 chr2 173828631 173828780 + 1.5 NA Intergenic UCON26|Unknown|Unknown 135175 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 360.75-7 chr4 61440262 61440580 + 1.5 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 238249 NM_001371342 163.5-71 chr5 100550211 100550414 + 1.5 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 14938 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 270.5-28 chr9 9814406 9814752 + 1.5 NA intron (NM_002839, intron 5 of 45) L1MA9|LINE|L1 15187 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 232.5-3 chr1 203831121 203831345 + 1.5 NA intron (NM_014827, intron 10 of 19) intron (NM_014827, intron 10 of 19) -30366 NR_130746 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 247.5-49 chr8 136954385 136954636 + 1.5 NA Intergenic Intergenic 423712 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 296.25-11 chr7 30515681 30516049 + 1.5 NA Intergenic Intergenic -11024 NM_001199816 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 149.75-29 chr2 122877216 122877438 + 1.5 NA Intergenic Intergenic 196154 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 116.75-8 chr10 62422776 62422895 + 1.5 NA intron (NM_199451, intron 3 of 7) ERVL-E-int|LTR|ERVL -47708 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 157.5-77 chr4 58970216 58970341 + 1.5 NA Intergenic L1ME3|LINE|L1 -14004 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 205-33 chr5 18140835 18141039 + 1.5 NA Intergenic Intergenic 333663 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 199.5-58 chr8 65048057 65048299 + 1.5 NA Intergenic Intergenic 132162 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 237-27 chr4 88703334 88703722 + 1.5 NA intron (NM_001271602, intron 22 of 24) L1ME3C|LINE|L1 -5699 NM_153757 266812 Hs.12554 NM_153757 ENSG00000177432 NAP1L5 DRLM nucleosome assembly protein 1 like 5 protein-coding 271.5-26 chr9 87720068 87720354 + 1.5 NA Intergenic Intergenic -5908 NM_145918 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 130.5-54 chr20 10970870 10970967 + 1.5 NA Intergenic Intergenic -55626 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 206-29 chr5 35878982 35879406 + 1.5 NA non-coding (NR_120485, exon 6 of 6) non-coding (NR_120485, exon 6 of 6) 22303 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 248.75-7 chr15 53697590 53697826 + 1.5 NA intron (NM_182758, intron 13 of 19) LTR33|LTR|ERVL 61955 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 212-40 chr7 104306587 104306839 + 1.5 NA Intergenic Intergenic -21943 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 179.75-41 chr4 60522229 60522360 + 1.5 NA Intergenic Intergenic -400325 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 166.75-14 chr12 119514558 119514743 + 1.5 NA intron (NM_178499, intron 7 of 13) Tigger3b|DNA|TcMar-Tigger -79124 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 529.25-2 chr3 181122369 181122976 + 1.5 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) -52472 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 316 chr1 116505450 116505747 + 1.5 NA Intergenic AluSc8|SINE|Alu -26772 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 184.5-77 chr8 91844130 91844356 + 1.5 NA Intergenic AluSx1|SINE|Alu 173437 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 190.5-61 chr5 85917591 85917738 + 1.5 NA Intergenic Intergenic -364780 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 293-19 chr6 72482477 72482732 + 1.5 NA Intergenic Intergenic 115858 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 210-38 chr8 26500276 26500450 + 1.5 NA Intergenic L1PA15|LINE|L1 13509 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 PNMA family member 2 protein-coding 474 chr11 11469892 11470469 + 1.5 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) -116930 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 126-9 chr10 72479351 72479464 + 1.5 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 44579 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 297.75-2 chr1 202929810 202930062 + 1.5 NA Intergenic AluSx|SINE|Alu -1337 NM_001303051 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 147.5-18 chr12 7721658 7721770 + 1.5 NA Intergenic Intergenic 10281 NM_199286 359787 Hs.131358 NM_199286 ENSG00000187569 DPPA3 Pgc7|STELLA developmental pluripotency associated 3 protein-coding 246.5-15 chr5 6619918 6620107 + 1.5 NA intron (NM_017755, intron 7 of 18) intron (NM_017755, intron 7 of 18) 13032 NM_017755 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 368-6 chr3 184894736 184895210 + 1.5 NA intron (NM_001009921, intron 22 of 46) intron (NM_001009921, intron 22 of 46) 82466 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 169-10 chr12 2402890 2403113 + 1.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 133225 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 317.25-16 chr8 114393777 114394180 + 1.5 NA Intergenic L1PA16|LINE|L1 -957039 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 188.5-17 chr15 39095629 39095874 + 1.5 NA Intergenic Intergenic -154918 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 249.25-27 chr9 38141662 38141880 + 1.5 NA Intergenic L2|LINE|L2 -72544 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 232.5-37 chr5 14969288 14969484 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -97608 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 211.5-11 chr12 96667416 96667677 + 1.5 NA intron (NM_001306084, intron 39 of 67) THE1B-int|LTR|ERVL-MaLR 177969 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 250-9 chr14 99083618 99083855 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 188461 NM_001282238 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 214.5-35 chr3 117501481 117501705 + 1.5 NA Intergenic Intergenic 189332 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 261-47 chr9 14490685 14490994 + 1.5 NA intron (NM_001369458, intron 1 of 11) L1ME3Cz|LINE|L1 41238 NM_001369462 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 318-5 chr12 18166876 18167287 + 1.5 NA Intergenic Intergenic -76888 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 333-7 chr14 63931660 63931949 + 1.5 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 78800 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 204.25-39 chr4 49150424 49150593 + 1.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 163866 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 236-4 chr10 67053127 67053449 + 1.5 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 41022 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 298.25-14 chr7 62582655 62583133 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 721162 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 268.75-16 chr2 118065708 118066030 + 1.5 NA Intergenic Intergenic -22549 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 336.75-5 chr2 147713359 147713789 + 1.5 NA Intergenic Intergenic -130943 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 217-22 chr6 21547585 21547823 + 1.5 NA Intergenic Intergenic -35812 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 357.75-8 chr22 24980360 24980773 + 1.5 NA Intergenic AluSg4|SINE|Alu -33871 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 232-27 chr7 2700943 2701146 + 1.5 NA intron (NM_133463, intron 2 of 6) intron (NM_133463, intron 2 of 6) 12842 NM_001284355 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 203-34 chr7 38083590 38083857 + 1.5 NA Intergenic Intergenic -94522 NM_001363344 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 275.75-24 chr8 133697492 133697835 + 1.5 NA Intergenic Intergenic -13597 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 259-2 chr1 171785537 171785968 + 1.5 NA intron (NM_014955, intron 2 of 7) intron (NM_014955, intron 2 of 7) 4092 NM_015935 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 300.5-11 chr2 64301231 64301561 + 1.5 NA Intergenic HAL1|LINE|L1 -39363 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 228.5-11 chr16 4093315 4093482 + 1.5 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 23044 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 155.5-3 chr1 41061499 41061621 + 1.5 NA intron (NM_001172218, intron 11 of 15) L1MC1|LINE|L1 -39805 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 212 chr1 10402162 10402469 + 1.5 NA intron (NM_001304451, intron 3 of 11) AluJo|SINE|Alu 3251 NM_001304452 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 188-13 chr15 62453803 62453968 + 1.5 NA Intergenic Intergenic 110856 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 174.5-46 chr20 7059779 7060026 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR 194300 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 135.5-19 chr11 107495418 107495587 + 1.5 NA Intergenic Intergenic -37656 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 199-24 chr2 82514269 82514446 + 1.5 NA Intergenic Intergenic -342446 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 380.25 chr5 158332104 158332402 + 1.5 NA intron (NR_109888, intron 5 of 6) L1PA15|LINE|L1 77520 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 229-29 chr6 75254677 75254894 + 1.5 NA 3' UTR (NM_018247, exon 7 of 7) 3' UTR (NM_018247, exon 7 of 7) -4487 NM_001366292 1347 Hs.70312 NM_001865 ENSG00000112695 COX7A2 COX7AL|COX7AL1|COXVIIAL|COXVIIa-L|VIIAL cytochrome c oxidase subunit 7A2 protein-coding 193.5-52 chr4 42722214 42722352 + 1.5 NA Intergenic MIR|SINE|MIR -65178 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 333-10 chr21 34687155 34687502 + 1.5 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 18334 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 263.25-11 chr4 61462177 61462448 + 1.5 NA intron (NM_001371343, intron 2 of 23) UCON132b|DNA|hAT-Tip100 260140 NM_001371342 200.5-7 chr1 242621145 242621359 + 1.5 NA Intergenic Intergenic -96555 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 177-63 chr9 25211006 25211168 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 467771 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 182.25-51 chr7 48635181 48635361 + 1.5 NA intron (NM_152701, intron 59 of 61) L1M4b|LINE|L1 -289276 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 157.5-30 chr14 64919981 64920135 + 1.5 NA intron (NM_001204063, intron 1 of 3) intron (NM_001204063, intron 1 of 3) 5603 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 134-68 chr6 146346673 146346762 + 1.5 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -197116 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 211-16 chr2 65887206 65887590 + 1.5 NA Intergenic Intergenic -454799 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 240-20 chr5 144274748 144275034 + 1.5 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 69500 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 271.5-21 chr4 30839140 30839394 + 1.5 NA intron (NM_032457, intron 1 of 2) MIRc|SINE|MIR 118898 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 203-44 chrX 95828050 95828201 + 1.5 NA Intergenic L1ME2|LINE|L1 509777 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 237-6 chr11 101613031 101613360 + 1.5 NA Intergenic Intergenic -29188 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 214.25-2 chr1 73151441 73151703 + 1.5 NA Intergenic Intergenic -154598 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 151.5-80 chr7 144030939 144031099 + 1.5 NA Intergenic L1M7|LINE|L1 -19383 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 192.5-63 chrX 65247405 65247573 + 1.5 NA Intergenic L1PA13|LINE|L1 -212748 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 169-49 chr8 54018440 54018601 + 1.5 NA intron (NM_006756, intron 1 of 9) MIR|SINE|MIR 3928 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 144-23 chr14 37650929 37651053 + 1.5 NA intron (NM_001310135, intron 3 of 32) intron (NM_001310135, intron 3 of 32) 55362 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 295-17 chr8 74533851 74534293 + 1.5 NA Intergenic MIRb|SINE|MIR -14471 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 189.75-33 chr4 34147567 34147721 + 1.5 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) -107751 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 156.5 chr1 48308113 48308341 + 1.5 NA intron (NM_001286238, intron 11 of 12) L1M4|LINE|L1 85511 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 295-2 chr1 177793565 177793828 + 1.5 NA Intergenic Intergenic 93172 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 319.25-6 chr7 90712853 90713154 + 1.5 NA intron (NM_001287136, intron 1 of 13) intron (NM_001287136, intron 1 of 13) 3187 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 248 chr1 117810047 117810400 + 1.5 NA Intergenic Intergenic 119398 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 163.75-75 chr9 27049729 27050047 + 1.5 NA intron (NM_025103, intron 16 of 19) MER33|DNA|hAT-Charlie -44216 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 276.25-3 chr14 62382527 62382909 + 1.5 NA Intergenic Intergenic -242745 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 206.5-21 chr15 70813005 70813307 + 1.5 NA Intergenic Intergenic -40083 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 271-5 chr12 31388175 31388426 + 1.5 NA intron (NM_144973, intron 20 of 20) intron (NM_144973, intron 20 of 20) -18999 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 325-7 chr4 65585942 65586273 + 1.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 83381 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 237-5 chr11 93652299 93652608 + 1.5 NA Intergenic UCON132b|DNA|hAT-Tip100 -9229 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 278.75-13 chr7 759649 759967 + 1.5 NA intron (NR_075098, intron 6 of 12) intron (NR_075098, intron 6 of 12) -32132 NM_001164759 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 175.25-28 chr2 81922798 81922993 + 1.5 NA Intergenic Intergenic -455949 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 291.5-11 chr3 133363106 133363353 + 1.5 NA intron (NM_001282865, intron 2 of 3) MER5A|DNA|hAT-Charlie -36827 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 189.75-25 chr20 43603750 43603934 + 1.5 NA exon (NM_001303459, exon 4 of 13) exon (NM_001303459, exon 4 of 13) 12905 NM_001303458 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 145.5-5 chr1 114564048 114564256 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 17463 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 181.5-5 chr10 30462460 30462644 + 1.5 NA TTS (NM_001320961) TTS (NM_001320961) 27906 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 406.25 chr14 76043334 76043748 + 1.5 NA intron (NR_045664, intron 3 of 7) AluSx3|SINE|Alu 57778 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 325-3 chr15 96761504 96761901 + 1.5 NA Intergenic Intergenic 19952 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 248.25-32 chr7 13693555 13693788 + 1.5 NA Intergenic MIRb|SINE|MIR 292843 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 126.5-62 chr20 18412269 18412362 + 1.5 NA intron (NM_001367611, intron 13 of 20) L1MB3|LINE|L1 33266 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 399.75-2 chr10 117769383 117769774 + 1.5 NA Intergenic L1MEj|LINE|L1 -224510 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 285-16 chr4 88984772 88985103 + 1.5 NA intron (NM_014883, intron 4 of 23) L1MB8|LINE|L1 72248 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 186.25-31 chr2 222536788 222537232 + 1.5 NA intron (NM_152386, intron 4 of 4) intron (NM_152386, intron 4 of 4) 112467 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 157.5-52 chr2 105734770 105734910 + 1.5 NA Intergenic Intergenic -10072 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 248.25-10 chr18 59607113 59607372 + 1.5 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 90181 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 195.75-47 chr5 164003858 164004160 + 1.5 NA Intergenic MIRb|SINE|MIR 463393 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 210.75-31 chr5 153029559 153029752 + 1.5 NA Intergenic Intergenic -57306 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 301.75-6 chr15 58445945 58446242 + 1.5 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 14102 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 221.5-20 chr2 128927224 128927409 + 1.5 NA Intergenic L1MC3|LINE|L1 62716 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 305.25-3 chr12 59589299 59589651 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -6554 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 178-38 chr4 57847275 57847462 + 1.5 NA Intergenic L1MEc|LINE|L1 421496 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 380-2 chr16 48037950 48038423 + 1.5 NA Intergenic L1MA5|LINE|L1 72497 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 146.25-47 chr21 27632933 27633163 + 1.5 NA Intergenic L1MA5A|LINE|L1 -89331 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 171-31 chr20 23624074 23624251 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR 13793 NM_000099 1471 Hs.304682 NM_000099 ENSG00000101439 CST3 ARMD11|HEL-S-2 cystatin C protein-coding 296.75-9 chr8 76431772 76432102 + 1.5 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 25283 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 223-2 chr1 105960737 105961106 + 1.5 NA intron (NR_146609, intron 5 of 5) L1MA6|LINE|L1 67332 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 158-15 chr12 31955871 31956004 + 1.5 NA Intergenic Intergenic -3478 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 220-33 chr7 108668282 108668481 + 1.5 NA Intergenic Intergenic 98507 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 205-41 chr8 101003506 101003649 + 1.5 NA Intergenic Intergenic -48477 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 131-39 chr3 89401416 89401580 + 1.5 NA intron (NM_005233, intron 7 of 16) intron (NM_005233, intron 7 of 16) 293877 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 236.5-15 chr13 36304370 36304722 + 1.5 NA exon (NM_001142296, exon 10 of 10) exon (NM_001142296, exon 10 of 10) -6691 NM_001144982 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 158-4 chr10 26307056 26307216 + 1.5 NA Intergenic Intergenic 90362 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 273-23 chr5 103060727 103060958 + 1.5 NA Intergenic Intergenic 59296 NM_001317954 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 147.75-46 chr3 43780536 43780672 + 1.5 NA Intergenic Intergenic -89010 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 193.75-45 chr8 86061700 86061958 + 1.5 NA intron (NM_033126, intron 2 of 2) MLT1H1|LTR|ERVL-MaLR 7839 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 133.5-18 chr11 82310296 82310444 + 1.5 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 93543 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 237.75-13 chr13 59076895 59077149 + 1.5 NA Intergenic Intergenic -843905 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 180-53 chr5 45820863 45821059 + 1.5 NA Intergenic HAL1|LINE|L1 -124581 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 269-16 chr6 132960823 132961082 + 1.5 NA Intergenic LFSINE_Vert|SINE|tRNA -127128 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 220.5-19 chr18 773195 773397 + 1.5 NA intron (NM_005433, intron 1 of 11) intron (NM_005433, intron 1 of 11) 38946 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 205.5-33 chr22 27408403 27408570 + 1.5 NA Intergenic L2c|LINE|L2 97835 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 154.5-20 chr11 88228738 88228907 + 1.5 NA Intergenic L1PB4|LINE|L1 52320 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 220-22 chr3 69776236 69776471 + 1.5 NA intron (NM_006722, intron 1 of 9) MIR|SINE|MIR 12542 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 159-12 chr12 13467816 13468010 + 1.5 NA Intergenic MIRc|SINE|MIR -91168 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 293.75-4 chr18 1824356 1824762 + 1.5 NA Intergenic Intergenic -464930 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 173.25-34 chr2 112192634 112192768 + 1.5 NA Intergenic Intergenic 54316 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 154-51 chr4 159325341 159325641 + 1.5 NA intron (NM_001351727, intron 5 of 24) Tigger19b|DNA|TcMar-Tigger 57682 NM_001351727 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 471.5 chr14 67981329 67982117 + 1.5 NA intron (NM_133509, intron 7 of 10) L1ME1|LINE|L1 158131 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 232.25-13 chr2 18998669 18998978 + 1.5 NA intron (NR_135287, intron 2 of 3) intron (NR_135287, intron 2 of 3) 28148 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 200.5-23 chr16 50776278 50776491 + 1.5 NA intron (NM_015247, intron 8 of 19) intron (NM_015247, intron 8 of 19) -30288 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 340.25 chr15 43363199 43363522 + 1.5 NA intron (NM_152455, intron 4 of 4) MIRb|SINE|MIR 6700 NM_152455 146050 Hs.418287 NM_152455 ENSG00000140265 ZSCAN29 ZNF690|Zfp690 zinc finger and SCAN domain containing 29 protein-coding 218.25-47 chr8 125725804 125726032 + 1.5 NA Intergenic Intergenic 225279 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 143-67 chr6 164907143 164907249 + 1.5 NA Intergenic Intergenic -85133 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 127.5-12 chr1 211124783 211124944 + 1.5 NA intron (NM_002238, intron 1 of 10) MER63A|DNA|hAT-Blackjack 8511 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 166.5-39 chr15 74647446 74647620 + 1.5 NA intron (NM_001142443, intron 7 of 9) AmnSINE1|SINE|5S-Deu-L2 32539 NM_001130028 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 167.25-15 chr10 52934591 52934758 + 1.5 NA Intergenic Intergenic -162974 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 513 chr2 119901640 119902281 + 1.5 NA intron (NM_002830, intron 10 of 26) L1MCb|LINE|L1 -111117 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 223-3 chr1 115418060 115418299 + 1.5 NA Intergenic L1MB7|LINE|L1 -79943 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 189.5-69 chr8 79555185 79555408 + 1.5 NA Intergenic Intergenic -55821 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 147-18 chr11 133217206 133217389 + 1.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -273529 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 146.75-26 chr3 53989009 53989200 + 1.5 NA Intergenic L1MB4|LINE|L1 -97245 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 203.5-52 chr9 3059123 3059339 + 1.5 NA Intergenic Intergenic -122358 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 222.5-50 chr9 35607775 35608028 + 1.5 NA promoter-TSS (NR_039813) promoter-TSS (NR_039813) -193 NR_039813 100616214 NR_039813 ENSG00000263892 MIR4667 mir-4667 microRNA 4667 ncRNA 327 chr10 75496974 75497353 + 1.5 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -55295 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 390.5-2 chr10 26546913 26547283 + 1.5 NA intron (NM_019043, intron 11 of 14) L1MA6|LINE|L1 32209 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 314.75 chr10 14271960 14272199 + 1.5 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 58805 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 136-35 chr2 114146712 114146833 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -166788 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 368.5-4 chr3 42965679 42966002 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -13471 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 GASK1A C3orf41|FAM198A golgi associated kinase 1A protein-coding 305.25-7 chr18 79537888 79538187 + 1.5 NA Intergenic L1MD2|LINE|L1 -41245 NR_148949 284240 Hs.448912 NR_148949 LOC284240 - uncharacterized LOC284240 ncRNA 282.25 chr1 203378466 203378674 + 1.5 NA Intergenic Intergenic -27448 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 317.25 chr1 154514323 154514563 + 1.5 NA intron (NM_182499, intron 4 of 12) L1MC5a|LINE|L1 -12031 NR_135169 126669 Hs.591481 NM_001010846 ENSG00000169291 SHE - Src homology 2 domain containing E protein-coding 232.5-24 chr20 62910755 62910968 + 1.5 NA exon (NM_080797, exon 3 of 15) exon (NM_080797, exon 3 of 15) 15644 NM_001193369 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 184-5 chr10 15643919 15644076 + 1.5 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 75925 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 194-19 chr2 63257398 63257627 + 1.5 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -137970 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 219-30 chr6 53318356 53318593 + 1.5 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 19143 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 245.5-37 chr7 46268884 46269195 + 1.5 NA Intergenic Intergenic -347767 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 487.5 chr20 40221815 40222442 + 1.5 NA Intergenic Intergenic 217667 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 277.5-2 chr11 84291711 84292002 + 1.5 NA intron (NM_001142699, intron 7 of 27) MIRb|SINE|MIR -18576 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 158.75-70 chr8 88960825 88961009 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -633434 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 324-5 chr6 148638947 148639229 + 1.5 NA Intergenic L1MCb|LINE|L1 -107942 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 230-25 chr7 3291421 3291714 + 1.5 NA Intergenic MIRb|SINE|MIR -9685 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 134.25-76 chr6 45184559 45184679 + 1.5 NA intron (NM_001350325, intron 2 of 10) L1MDb|LINE|L1 13151 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 219.25-24 chr5 2347882 2348065 + 1.5 NA Intergenic L1M4a1|LINE|L1 -35772 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 288-9 chr18 2991313 2991706 + 1.5 NA intron (NM_014646, intron 1 of 19) AluJb|SINE|Alu 20438 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 152-65 chr8 128532774 128532952 + 1.5 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 31816 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 400-5 chr20 7083322 7083617 + 1.5 NA Intergenic Intergenic 170733 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 260-31 chr7 2431401 2431624 + 1.5 NA intron (NM_018641, intron 1 of 1) intron (NM_018641, intron 1 of 1) 27901 NM_001243794 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 344.5-4 chr16 86549008 86549336 + 1.5 NA intron (NR_027489, intron 3 of 8) MER5A|DNA|hAT-Charlie 6063 NM_001159377 64779 Hs.343627 NM_022764 ENSG00000103248 MTHFSD - methenyltetrahydrofolate synthetase domain containing protein-coding 230.25-3 chr12 74092864 74093158 + 1.5 NA Intergenic L1M2|LINE|L1 199620 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 116-49 chr4 47569910 47570067 + 1.5 NA intron (NM_020453, intron 16 of 22) L2a|LINE|L2 -82681 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 177.5-54 chr5 80138605 80138776 + 1.5 NA TTS (NM_001174072) TTS (NM_001174072) -55025 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 214-11 chr11 97064814 97065080 + 1.5 NA Intergenic L1MA4A|LINE|L1 556522 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 263.25-15 chr5 38497780 38498095 + 1.5 NA intron (NM_001127671, intron 12 of 19) L1ME4a|LINE|L1 52391 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 326.75-4 chr14 91909682 91910087 + 1.5 NA intron (NM_006329, intron 4 of 10) L1MB2|LINE|L1 37818 NM_006329 10516 Hs.332708 NM_006329 ENSG00000140092 FBLN5 ADCL2|ARCL1A|ARMD3|DANCE|EVEC|FIBL-5|HNARMD|UP50 fibulin 5 protein-coding 139.5-26 chr13 70529248 70529364 + 1.5 NA Intergenic L2a|LINE|L2 -420813 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 168-40 chr2 104427805 104428067 + 1.5 NA Intergenic Intergenic -6411 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 218.25 chr1 8490484 8490688 + 1.5 NA intron (NM_001042681, intron 10 of 22) L1ME1|LINE|L1 4327 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 477 chr1 50173775 50174282 + 1.5 NA intron (NM_001144774, intron 2 of 6) intron (NM_001144774, intron 2 of 6) 64195 NR_136725 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 191-51 chr9 135627755 135627981 + 1.5 NA intron (NM_182974, intron 3 of 4) L1MB7|LINE|L1 11672 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 171-12 chr10 130857419 130857728 + 1.5 NA Intergenic LTR50|LTR|ERVL 105095 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 204.75-26 chr2 98167346 98167499 + 1.5 NA intron (NM_001345864, intron 2 of 21) L1MEc|LINE|L1 17889 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 252.75-17 chr20 55703374 55703613 + 1.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -276296 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 237-29 chr5 38965523 38965813 + 1.5 NA intron (NM_001285439, intron 15 of 38) intron (NM_001285439, intron 15 of 38) 108731 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 291.5-18 chr8 123029477 123029763 + 1.5 NA intron (NM_001330601, intron 1 of 6) intron (NM_001330601, intron 1 of 6) -3848 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 182.25-12 chr14 66356851 66357106 + 1.5 NA Intergenic Intergenic -129393 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 173.5-10 chr11 43851853 43852021 + 1.5 NA intron (NM_016142, intron 9 of 10) intron (NM_016142, intron 9 of 10) -28894 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 274-4 chr1 152450962 152451270 + 1.5 NA Intergenic MIR3|SINE|MIR -36853 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 222-4 chr1 166855748 166855992 + 1.5 NA TTS (NM_053053) TTS (NM_053053) 16395 NM_001314014 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 145.5-4 chr1 86907189 86907360 + 1.5 NA intron (NR_144513, intron 1 of 4) intron (NR_144513, intron 1 of 4) 6852 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 283.5-10 chr2 184682994 184683358 + 1.5 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 84647 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 180.5-63 chr3 170122340 170122536 + 1.5 NA intron (NM_024947, intron 9 of 14) AluJb|SINE|Alu 59295 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 265-5 chr13 22048863 22049145 + 1.5 NA Intergenic Intergenic -161281 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 230.75-14 chr3 88686957 88687195 + 1.5 NA Intergenic Intergenic 348620 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 301.5-9 chr2 132884653 132885060 + 1.5 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -30701 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 118.25-7 chr10 56869445 56869607 + 1.5 NA Intergenic L1ME3|LINE|L1 435033 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 255-12 chr16 78220717 78221010 + 1.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 121209 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 115.75-29 chr16 6408908 6409031 + 1.5 NA intron (NM_018723, intron 2 of 15) L2c|LINE|L2 -364840 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 273.25-7 chr2 149317825 149318093 + 1.5 NA Intergenic MARNA|DNA|TcMar-Mariner -12026 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 192.5-32 chr20 42174030 42174258 + 1.5 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -511339 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 242-34 chr7 120424904 120425233 + 1.5 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 151893 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 165.75-57 chr5 110568181 110568339 + 1.5 NA intron (NM_001039763, intron 11 of 13) intron (NM_001039763, intron 11 of 13) -54345 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 192.75-52 chrX 79085865 79086053 + 1.5 NA Intergenic Intergenic -85013 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 129.5-70 chr4 96270440 96270543 + 1.5 NA Intergenic L2|LINE|L2 -40212 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 146.5-78 chr6 54929304 54929414 + 1.5 NA intron (NM_001010872, intron 4 of 4) intron (NM_001010872, intron 4 of 4) 82588 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 140-66 chr8 144448857 144448988 + 1.5 NA TTS (NM_001330618) TTS (NM_001330618) -4482 NM_013432 4796 Hs.675285 NM_013432 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku like, DNA repair protein protein-coding 186-51 chr7 8854529 8854682 + 1.5 NA Intergenic Intergenic 420996 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 200.5-42 chr3 29686009 29686217 + 1.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 248043 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 167-31 chr2 78021282 78021443 + 1.5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -66336 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 125.75-82 chrX 88912685 88912912 + 1.5 NA Intergenic Intergenic 165573 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 234.75-25 chr20 50289618 50289852 + 1.5 NA Intergenic MER30|DNA|hAT-Charlie -2985 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 248.25-17 chr2 191318233 191318502 + 1.5 NA intron (NM_012223, intron 3 of 28) intron (NM_012223, intron 3 of 28) 72963 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 275-17 chr8 104635230 104635478 + 1.5 NA Intergenic Intergenic -46330 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 196-44 chr8 101297162 101297361 + 1.5 NA Intergenic Intergenic -71632 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 135.75-90 chr6 157561179 157561407 + 1.5 NA intron (NM_024630, intron 2 of 8) intron (NM_024630, intron 2 of 8) 32161 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 231-11 chr14 67358697 67358927 + 1.5 NA intron (NM_015994, intron 1 of 8) intron (NM_015994, intron 1 of 8) 992 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 175-15 chr13 81301562 81301795 + 1.5 NA Intergenic Intergenic -74695 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 218.25-37 chr5 31753994 31754246 + 1.5 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 114989 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 143.5-10 chr10 66017829 66017965 + 1.5 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 446472 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 391-5 chr20 60080912 60081288 + 1.5 NA Intergenic Intergenic -6586 NR_109917 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 265.5-21 chr5 9289957 9290428 + 1.5 NA intron (NM_003966, intron 5 of 22) L1PB1|LINE|L1 -221141 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 240-13 chr16 71419867 71420096 + 1.5 NA intron (NR_146574, intron 1 of 2) intron (NR_146574, intron 1 of 2) 6483 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 200-27 chr20 45626719 45627078 + 1.5 NA intron (NM_147198, intron 1 of 4) L1MA5A|LINE|L1 -2841 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 163-16 chr16 76739159 76739325 + 1.5 NA Intergenic L1MB4|LINE|L1 104244 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 212-25 chr2 161295799 161296021 + 1.5 NA Intergenic Intergenic -12515 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 355.5-8 chr2 88687965 88688393 + 1.5 NA Intergenic Intergenic -3494 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 134.5-4 chr1 152406806 152406920 + 1.5 NA Intergenic L1MC5a|LINE|L1 7400 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 169.5-82 chr8 80135027 80135254 + 1.5 NA intron (NR_105035, intron 1 of 6) L3|LINE|CR1 35981 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 288 chr1 115774481 115774856 + 1.5 NA Intergenic L1ME1|LINE|L1 -5863 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 275.25-18 chr5 13308506 13308762 + 1.5 NA Intergenic Intergenic -275748 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 172.5-28 chr2 57914698 57915042 + 1.5 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 7219 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 224.25-4 chr10 121485878 121486072 + 1.5 NA intron (NR_073009, intron 14 of 16) intron (NR_073009, intron 14 of 16) 45339 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 288.5-15 chr5 62189785 62190121 + 1.5 NA Intergenic L1MA9|LINE|L1 -116209 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 188.25-48 chr5 146305359 146305546 + 1.5 NA Intergenic MIR|SINE|MIR -33387 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 327-10 chr5 13840592 13841002 + 1.5 NA intron (NM_001369, intron 34 of 78) intron (NM_001369, intron 34 of 78) 103683 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 139.5-6 chr1 194754970 194755120 + 1.5 NA Intergenic Intergenic 1333670 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 220 chr1 25198262 25198550 + 1.5 NA Intergenic Intergenic 34096 NM_015484 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 441-4 chr3 81253637 81253982 + 1.5 NA Intergenic Intergenic 259941 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 247.5-7 chr12 102183516 102183787 + 1.5 NA intron (NM_001319994, intron 9 of 10) intron (NM_001319994, intron 9 of 10) 14182 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 238.5-23 chr3 177198440 177198748 + 1.5 NA Intergenic Intergenic -1112 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 273-28 chr8 129917385 129917763 + 1.5 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 22237 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 187.75-22 chr2 35852166 35852372 + 1.5 NA Intergenic Intergenic 380864 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 316.5-9 chr2 207664765 207665147 + 1.5 NA intron (NR_135566, intron 1 of 3) intron (NR_135566, intron 1 of 3) 2526 NR_135567 102724714 Hs.443475 NR_135566 ENSG00000224137 LINC01857 - long intergenic non-protein coding RNA 1857 ncRNA 232.5-8 chr10 122117250 122117468 + 1.5 NA intron (NM_001291879, intron 1 of 16) AluSz6|SINE|Alu 4474 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 167-4 chr10 69168658 69168837 + 1.5 NA intron (NM_001318946, intron 7 of 7) intron (NM_001318946, intron 7 of 7) -11487 NM_001323584 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 261.75-28 chr8 14982724 14983060 + 1.5 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -129382 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 128.5-35 chr18 1285220 1285379 + 1.5 NA intron (NR_023926, intron 2 of 5) L1MC4|LINE|L1 74330 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 236.5-50 chr9 29289042 29289267 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -75553 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 267-22 chr5 125158823 125159014 + 1.5 NA intron (NR_109882, intron 3 of 5) intron (NR_109882, intron 3 of 5) 122087 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 193.5-34 chr21 26981635 26981896 + 1.5 NA Intergenic L1MC3|LINE|L1 -14677 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 183-43 chr3 33426914 33427060 + 1.5 NA intron (NM_001128160, intron 1 of 14) AluSz6|SINE|Alu 13391 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 171.75-41 chr4 102673805 102674018 + 1.5 NA intron (NM_005908, intron 8 of 16) intron (NM_005908, intron 8 of 16) 87057 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 202.5-5 chr12 14888710 14888911 + 1.5 NA Intergenic Intergenic -2956 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 170.25-31 chr18 52335657 52335814 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -4462 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 211-33 chr8 18112180 18112348 + 1.5 NA Intergenic L1MA5A|LINE|L1 -27303 NM_001127505 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 379.75-2 chr8 88650239 88650870 + 1.5 NA Intergenic L1MCa|LINE|L1 -323071 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 237-4 chr11 47391762 47391945 + 1.5 NA Intergenic MIRc|SINE|MIR -9117 NR_039707 100616222 NR_039707 ENSG00000264583 MIR4487 mir-4487 microRNA 4487 ncRNA 213.25-37 chr8 142169071 142169375 + 1.5 NA Intergenic Intergenic -7116 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 147.25-40 chr3 48266832 48267044 + 1.5 NA intron (NM_016089, intron 3 of 3) intron (NM_016089, intron 3 of 3) 24740 NR_134638 101060195 Hs.670746 NR_134638 FCF1P2 - FCF1 pseudogene 2 pseudo 164-25 chr19 36846917 36847048 + 1.5 NA intron (NM_001242800, intron 1 of 4) MER21C|LTR|ERVL 3285 NM_001242801 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 194-16 chr14 28530823 28531044 + 1.5 NA Intergenic MIR1_Amn|SINE|MIR 234386 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 197.25-53 chr6 109906717 109906927 + 1.5 NA Intergenic L1MC2|LINE|L1 -71434 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 262.5-29 chr4 86658473 86658779 + 1.5 NA intron (NM_080685, intron 2 of 47) L1MEd|LINE|L1 64311 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 161.5-53 chr21 44463353 44463595 + 1.5 NA Intergenic Intergenic 7964 NM_030891 81543 Hs.326579 NM_030891 ENSG00000160233 LRRC3 C21orf102|C21orf30|LRRC3DN leucine rich repeat containing 3 protein-coding 180-27 chr17 51596672 51596878 + 1.5 NA Intergenic Intergenic 161348 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 182-3 chr1 65899930 65900175 + 1.5 NA intron (NM_002600, intron 1 of 16) L1PA16|LINE|L1 -13193 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 135.75-82 chr5 142393034 142393174 + 1.5 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 67811 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 171-64 chrX 107814202 107814371 + 1.5 NA Intergenic L1PA11|LINE|L1 -11580 NM_012216 11043 Hs.12256 NM_012216 ENSG00000080561 MID2 FXY2|MRX101|RNF60|TRIM1 midline 2 protein-coding 313.75-8 chr6 143647116 143647371 + 1.5 NA intron (NM_014721, intron 1 of 12) MIRb|SINE|MIR -30722 NM_001100165 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 216.5-43 chr8 127627858 127628026 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 106025 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 281.5-7 chr2 36208713 36208922 + 1.5 NA Intergenic L1MA9|LINE|L1 146753 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 252.75-32 chr7 42696770 42697040 + 1.5 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 9542 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 216.75-11 chr12 32144436 32144723 + 1.5 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 37732 NM_001354188 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 204.5-66 chr8 134290566 134290784 + 1.5 NA Intergenic Intergenic -307396 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 343.5-5 chr3 151447339 151447736 + 1.5 NA exon (NM_178822, exon 4 of 6) exon (NM_178822, exon 4 of 6) -6757 NM_001178145 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 243.75-15 chr2 183103151 183103355 + 1.5 NA Intergenic L1M1|LINE|L1 -14237 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 256-4 chr1 151754518 151754801 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8310 NM_001134939 51686 Hs.713789 NM_016178 ENSG00000143450 OAZ3 AZ3|OAZ-t|TISP15 ornithine decarboxylase antizyme 3 protein-coding 186.5-36 chr2 202896355 202896525 + 1.5 NA intron (NM_018256, intron 5 of 12) AluSx1|SINE|Alu -15778 NM_001282911 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 264-33 chr8 137252686 137252962 + 1.5 NA Intergenic L1MC3|LINE|L1 160764 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 319.5-11 chr4 12318358 12318778 + 1.5 NA Intergenic Charlie8|DNA|hAT-Charlie 95117 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 526.5 chr12 61501973 61502546 + 1.5 NA Intergenic L1ME4c|LINE|L1 690580 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 316-15 chr3 175724715 175724996 + 1.5 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 51478 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 312-9 chr22 48164552 48164846 + 1.5 NA Intergenic Intergenic -109665 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 199.5-48 chr6 113405211 113405479 + 1.5 NA Intergenic MIRb|SINE|MIR 28102 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 219.75-11 chr15 75962737 75962955 + 1.5 NA intron (NM_138573, intron 3 of 5) intron (NM_138573, intron 3 of 5) 49578 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 175.5-2 chr1 107641249 107641574 + 1.5 NA intron (NM_006113, intron 20 of 26) intron (NM_006113, intron 20 of 26) 47088 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 155-46 chr5 39360173 39360492 + 1.5 NA intron (NM_001737, intron 1 of 10) MIR|SINE|MIR 4163 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 127.5-104 chr6 25127437 25127556 + 1.5 NA intron (NR_027626, intron 2 of 6) intron (NR_027626, intron 2 of 6) 10327 NR_002174 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 153-41 chr5 38833298 38833448 + 1.5 NA intron (NR_109951, intron 1 of 3) L1ME4a|LINE|L1 12456 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 171-51 chr7 13183758 13183917 + 1.5 NA Intergenic Intergenic 496204 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 169.5-66 chr5 111236038 111236164 + 1.5 NA intron (NM_001744, intron 1 of 10) MIR|SINE|MIR 11717 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 225.5-3 chr1 112137842 112138062 + 1.5 NA Intergenic MIRb|SINE|MIR 147416 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 164-30 chr2 123588051 123588232 + 1.5 NA Intergenic MER44C|DNA|TcMar-Tigger 437033 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 223-20 chr2 17120942 17121115 + 1.5 NA Intergenic Intergenic 397412 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 252.5-9 chr15 77384405 77384636 + 1.5 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 35584 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 168.75-28 chr2 126473323 126473462 + 1.5 NA Intergenic Intergenic -182543 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 245-24 chr4 39406270 39406485 + 1.5 NA promoter-TSS (NM_175737) promoter-TSS (NM_175737) -553 NM_175737 152831 Hs.90756 NM_175737 ENSG00000134962 KLB BKL klotho beta protein-coding 179-7 chr10 74037709 74037924 + 1.5 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 39700 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 168-48 chr3 78785303 78785495 + 1.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 234060 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 209-17 chr20 46608541 46608780 + 1.5 NA intron (NM_001193340, intron 4 of 12) intron (NM_001193340, intron 4 of 12) 42799 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 258.75-3 chr1 159028136 159028415 + 1.5 NA intron (NM_001206567, intron 5 of 10) L1PBa|LINE|L1 18368 NM_001206567 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 187-60 chr7 110888548 110888708 + 1.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -202378 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 157.25-40 chr2 209703835 209703952 + 1.5 NA intron (NM_001363910, intron 11 of 15) intron (NM_001363910, intron 11 of 15) -67939 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 284.5-22 chr8 144288418 144288611 + 1.5 NA intron (NM_015201, intron 2 of 15) AluSx|SINE|Alu 2924 NM_015201 23246 Hs.535901 NM_015201 ENSG00000261236 BOP1 - BOP1 ribosomal biogenesis factor protein-coding 314.5-14 chr8 60134419 60134725 + 1.5 NA Intergenic Intergenic 146828 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 284.25-6 chr15 101329909 101330155 + 1.5 NA intron (NM_138319, intron 14 of 20) intron (NM_138319, intron 14 of 20) -4405 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 247.5-37 chr7 92713319 92713533 + 1.5 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) 120533 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 183-37 chr2 235794406 235794584 + 1.5 NA intron (NM_001037131, intron 6 of 17) AluSx|SINE|Alu -276574 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 318.75-7 chr18 71152178 71152464 + 1.5 NA Intergenic Intergenic 426635 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 187.25-31 chr2 185124545 185124861 + 1.5 NA Intergenic Intergenic 42369 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 117.5-78 chr5 118141573 118141787 + 1.5 NA intron (NR_104997, intron 2 of 2) HAL1|LINE|L1 -140894 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 148.5-107 chr8 82124511 82124633 + 1.5 NA Intergenic Intergenic -282286 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 308.5-10 chr2 170238198 170238536 + 1.5 NA intron (NM_001083615, intron 7 of 33) (CTCT)n|Simple_repeat|Simple_repeat 60220 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 277-20 chr5 51421534 51421872 + 1.5 NA Intergenic L1ME4a|LINE|L1 38255 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 292.25-11 chrX 64101414 64101784 + 1.5 NA Intergenic Intergenic 104109 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 152.25-4 chr1 103942415 103942576 + 1.5 NA Intergenic Intergenic -130528 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 153.5-71 chr4 64610557 64610697 + 1.5 NA Intergenic Intergenic -201167 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 224.5-20 chr2 70375015 70375242 + 1.5 NA Intergenic Intergenic -73061 NM_001329757 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 195-15 chr13 76879819 76880078 + 1.5 NA TTS (NM_138444) TTS (NM_138444) 6457 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 289.5-21 chr6 82952012 82952363 + 1.5 NA intron (NR_146807, intron 10 of 10) MIR|SINE|MIR 113654 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 235.5-26 chr2 96996664 96996870 + 1.5 NA Intergenic MIRb|SINE|MIR -10187 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 211.25-3 chr1 105677008 105677188 + 1.5 NA Intergenic Intergenic -58163 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 286.5-13 chr6 124851694 124851964 + 1.5 NA Intergenic Intergenic -110716 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 268.5-7 chr12 103229799 103230111 + 1.5 NA Intergenic Intergenic 78113 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 335.5-7 chr2 165113712 165114133 + 1.5 NA exon (NM_001081676, exon 20 of 28) exon (NM_001081676, exon 20 of 28) 90128 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 224.5-21 chr2 129512959 129513251 + 1.5 NA Intergenic L1MCa|LINE|L1 -239214 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 362.5-9 chr6 85577270 85577572 + 1.5 NA intron (NM_001350539, intron 1 of 28) AluSz|SINE|Alu 16437 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 298.75-6 chr2 223584998 223585369 + 1.5 NA Intergenic Intergenic 17178 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 115.25-53 chr2 128805259 128805416 + 1.5 NA Intergenic MER68|LTR|ERVL -59263 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 199.5-18 chr14 101048371 101048527 + 1.5 NA promoter-TSS (NR_030257) promoter-TSS (NR_030257) -209 NR_030257 664613 NR_030257 ENSG00000207587 MIR544A MIR544|MIRN544|hsa-mir-544|hsa-mir-544a microRNA 544a ncRNA 172.5-89 chr8 129764677 129764818 + 1.5 NA intron (NM_031415, intron 4 of 13) L1MA3|LINE|L1 21877 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 239.25-17 chr2 58513369 58513686 + 1.5 NA Intergenic Intergenic -7226 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 249-26 chr3 38385374 38385687 + 1.5 NA intron (NR_146068, intron 12 of 16) L1MEg|LINE|L1 38745 NM_001349180 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 231-18 chr2 17174859 17175129 + 1.5 NA Intergenic Intergenic 343446 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 201-14 chr12 112878413 112878612 + 1.5 NA intron (NR_145127, intron 14 of 22) L2a|LINE|L2 -28265 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 176.5-18 chr12 23952703 23952853 + 1.5 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -1746 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 217-16 chr22 37763515 37763698 + 1.5 NA intron (NM_001039141, intron 17 of 23) intron (NM_001039141, intron 17 of 23) 17372 NM_138632 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 280.25-12 chr21 34892432 34892667 + 1.5 NA intron (NM_001754, intron 3 of 8) intron (NM_001754, intron 3 of 8) -3850 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 301.5-5 chr12 125303669 125303884 + 1.5 NA intron (NM_001366854, intron 1 of 8) L1MB4|LINE|L1 -22840 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 176.25-5 chr1 215488045 215488199 + 1.5 NA Intergenic Intergenic -79182 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 324.5-10 chr2 79682282 79682607 + 1.5 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -33085 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 263.25-4 chr10 59441606 59441952 + 1.5 NA Intergenic L1M4c|LINE|L1 -78598 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 160.75-6 chr1 199230192 199230338 + 1.5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 81667 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 147.75-73 chr7 7327625 7327730 + 1.5 NA Intergenic Intergenic 72523 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 127.75-45 chr19 41194195 41194345 + 1.5 NA intron (NM_030622, intron 1 of 8) intron (NM_030622, intron 1 of 8) 1051 NM_030622 29785 Hs.98370 NM_030622 ENSG00000167600 CYP2S1 CYPIIS1 cytochrome P450 family 2 subfamily S member 1 protein-coding 194-24 chr3 6289702 6289958 + 1.5 NA Intergenic Intergenic 515619 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 219-11 chr17 41436552 41436809 + 1.5 NA 3' UTR (NM_006771, exon 7 of 7) 3' UTR (NM_006771, exon 7 of 7) 4664 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 261.5-29 chr7 36341243 36341533 + 1.5 NA intron (NM_001300956, intron 1 of 5) L1M6|LINE|L1 25852 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 158.75-69 chr8 62946761 62946891 + 1.5 NA intron (NR_130764, intron 5 of 6) intron (NR_130764, intron 5 of 6) -31035 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 192-50 chr7 38063291 38063546 + 1.5 NA Intergenic Intergenic -114827 NM_001363344 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 234.5-20 chr19 37907123 37907435 + 1.5 NA promoter-TSS (NM_001291088) promoter-TSS (NM_001291088) 71 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 227.5-50 chr7 83014862 83015064 + 1.5 NA intron (NM_033026, intron 3 of 24) MIR|SINE|MIR 147921 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 167.5-27 chr16 27249013 27249235 + 1.5 NA intron (NM_145080, intron 2 of 7) AluJb|SINE|Alu -19081 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 NSMCE1-DT - NSMCE1 divergent transcript ncRNA 131.5-90 chr8 35315817 35315987 + 1.5 NA intron (NM_080872, intron 1 of 16) L2c|LINE|L2 80427 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 322.5-4 chr18 22141090 22141513 + 1.5 NA Intergenic L1MC4a|LINE|L1 27667 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 162-16 chr17 65672842 65673001 + 1.5 NA intron (NM_001353129, intron 24 of 26) L1M5|LINE|L1 -111273 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 297.75-21 chr9 99581923 99582232 + 1.5 NA Intergenic MamTip3|DNA|hAT-Tip100 -206820 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 172.75-29 chr5 11002822 11002953 + 1.5 NA intron (NM_001288715, intron 17 of 20) intron (NM_001288715, intron 17 of 20) -241653 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 192.75-21 chr21 27635768 27636022 + 1.5 NA Intergenic L1ME1|LINE|L1 -86484 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 270-14 chr18 12021951 12022249 + 1.5 NA intron (NM_014214, intron 5 of 7) L1MB3|LINE|L1 40593 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 270-19 chr3 145341354 145341626 + 1.5 NA Intergenic L3|LINE|CR1 727695 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 262-16 chr2 9898474 9898908 + 1.5 NA intron (NM_001318977, intron 7 of 13) intron (NM_001318977, intron 7 of 13) -53002 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 257-4 chr10 64684044 64684421 + 1.5 NA Intergenic Intergenic -141296 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 241.25-9 chr18 5539042 5539356 + 1.5 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 1357 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 211.75-22 chr2 223676163 223676439 + 1.5 NA Intergenic AluJb|SINE|Alu -73940 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 253.5-24 chr2 39667545 39667761 + 1.5 NA intron (NM_152390, intron 1 of 3) intron (NM_152390, intron 1 of 3) 1736 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 177-62 chr9 13247276 13247470 + 1.5 NA intron (NM_003829, intron 3 of 45) intron (NM_003829, intron 3 of 45) 32191 NM_001261407 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 298.5-13 chr18 75955415 75955778 + 1.5 NA Intergenic L1M3|LINE|L1 -167402 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 304.5-14 chr4 73894652 73895050 + 1.5 NA Intergenic Intergenic 25458 NM_001511 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 234.25-30 chr6 9749204 9749465 + 1.5 NA Intergenic Intergenic -655168 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 249.75-27 chrUn_KI270333v1 2474 2683 + 1.5 NA NA SAR|Satellite|Satellite NA NA 166.5-91 chr6 167359718 167359845 + 1.5 NA Intergenic AluY|SINE|Alu 24729 NR_163196 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 162.75-3 chr1 166936903 166937040 + 1.5 NA intron (NM_199351, intron 4 of 9) intron (NM_199351, intron 4 of 9) 38569 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 221.75-18 chr4 41456565 41456734 + 1.5 NA intron (NM_001289122, intron 1 of 25) MADE1|DNA|TcMar-Mariner -81508 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 231-12 chr15 33591055 33591466 + 1.5 NA intron (NM_001243996, intron 16 of 102) L2c|LINE|L2 280293 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 149.5-70 chr3 120762609 120762775 + 1.5 NA intron (NM_005513, intron 2 of 4) MIR3|SINE|MIR 19948 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 202.5-26 chr3 15946062 15946277 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 72398 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 315.25-4 chr15 76193680 76194000 + 1.5 NA intron (NM_152335, intron 9 of 10) L3|LINE|CR1 -12354 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 114.75-32 chr14 62470236 62470377 + 1.5 NA Intergenic Intergenic -330333 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 219-22 chr3 116835758 116836019 + 1.5 NA Intergenic Intergenic 14479 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 219-34 chr6 169512355 169512567 + 1.5 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 189568 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 142.5-101 chr9 32045722 32045901 + 1.5 NA Intergenic Intergenic -338792 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 176.5-65 chr4 47539716 47539845 + 1.5 NA intron (NM_020453, intron 9 of 22) MER103C|DNA|hAT-Charlie 54505 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 178.75-29 chr2 102343840 102343999 + 1.5 NA non-coding (NR_104167, exon 9 of 9) non-coding (NR_104167, exon 9 of 9) 6662 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 222-29 chr4 41043493 41043750 + 1.5 NA intron (NM_001330658, intron 3 of 15) L1ME3B|LINE|L1 170921 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 163.5-41 chr2 132955186 132955379 + 1.5 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 39725 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 151.5 chr1 25896236 25896374 + 1.5 NA intron (NM_001145454, intron 4 of 4) intron (NM_001145454, intron 4 of 4) 9848 NM_203401 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 281.25-14 chr8 90948227 90948778 + 1.5 NA intron (NM_022351, intron 10 of 12) intron (NM_022351, intron 10 of 12) 36575 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 213.75 chr1 47759702 47759908 + 1.5 NA TTS (NM_001194986) TTS (NM_001194986) 237580 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 152-8 chr1 241515209 241515358 + 1.5 NA intron (NM_000143, intron 2 of 9) intron (NM_000143, intron 2 of 9) 4502 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 210.5 chr1 67813717 67813948 + 1.5 NA intron (NM_018841, intron 1 of 3) intron (NM_018841, intron 1 of 3) -18456 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 187.75-17 chr17 49879223 49879523 + 1.5 NA Intergenic MIR|SINE|MIR -31356 NM_001077503 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 249.75-25 chr8 11274098 11274411 + 1.5 NA Intergenic Intergenic -10562 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 204-7 chr10 64224486 64224871 + 1.5 NA Intergenic L1MA5|LINE|L1 -600850 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 143.25-29 chr15 72224290 72224425 + 1.5 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 5554 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 224.25-22 chr2 233545725 233545904 + 1.5 NA intron (NM_001365479, intron 8 of 31) intron (NM_001365479, intron 8 of 31) 19759 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 330.75-4 chr15 83776075 83776553 + 1.5 NA intron (NM_207517, intron 4 of 29) LTR78|LTR|ERV1 122191 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 211.75-25 chr3 95331777 95332052 + 1.5 NA Intergenic MIRb|SINE|MIR 351279 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 183.75-12 chr12 47356010 47356132 + 1.5 NA Intergenic L2|LINE|L2 8198 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 118.25-64 chr3 123512997 123513124 + 1.5 NA intron (NM_001329786, intron 3 of 5) L1MC4|LINE|L1 -64515 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 281.5-18 chr7 113999606 113999935 + 1.5 NA Intergenic L1ME4b|LINE|L1 -80761 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 215-29 chr3 19802281 19802539 + 1.5 NA Intergenic MER61A|LTR|ERV1 131807 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 362.5-4 chr11 72272114 72272461 + 1.5 NA Intergenic L1MC2|LINE|L1 -28111 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 120.5-104 chr8 76049720 76049829 + 1.5 NA Intergenic Intergenic -356880 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 235-27 chr2 228645321 228645636 + 1.5 NA Intergenic Charlie15a|DNA|hAT-Charlie -34083 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 298-6 chr12 26521778 26522010 + 1.5 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 311300 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 213-34 chr4 72447990 72448209 + 1.5 NA intron (NM_014243, intron 3 of 21) Arthur1B|DNA|hAT-Tip100 121122 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 135-54 chr4 107433835 107433977 + 1.5 NA Intergenic Intergenic 286328 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 234.5-13 chr14 44947654 44947954 + 1.5 NA intron (NM_017658, intron 1 of 4) intron (NM_017658, intron 1 of 4) 13681 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 297.75-8 chr16 77233330 77233562 + 1.5 NA Intergenic Intergenic 34038 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 321-3 chr17 71396546 71396960 + 1.5 NA Intergenic Intergenic -194574 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 254.25-6 chr10 126869316 126869617 + 1.5 NA Intergenic Intergenic -35943 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 197.5-66 chrX 50116731 50117110 + 1.5 NA Intergenic Intergenic 47419 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 149.5-62 chr20 18568252 18568384 + 1.5 NA intron (NM_001348958, intron 1 of 1) intron (NM_001348958, intron 1 of 1) 898 NM_001348957 388789 Hs.349092 NM_001348957 ENSG00000232388 SMIM26 LINC00493 small integral membrane protein 26 protein-coding 308 chr1 166630674 166631089 + 1.5 NA Intergenic Intergenic 26965 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 141.5-28 chr13 88827489 88827621 + 1.5 NA Intergenic Intergenic 200702 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 193.75-34 chr3 29305484 29305640 + 1.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 24250 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 217.75-34 chr6 36736201 36736476 + 1.5 NA Intergenic MIRc|SINE|MIR 21062 NM_001314019 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 257.5-17 chr20 49554157 49554452 + 1.5 NA intron (NM_000961, intron 1 of 9) MER4-int|LTR|ERV1 13833 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 180.75-59 chr8 100745799 100745945 + 1.5 NA Intergenic AluSp|SINE|Alu -23784 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 153.25-15 chr12 9275240 9275354 + 1.5 NA Intergenic MIRb|SINE|MIR -8360 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 251.5-34 chr9 83492149 83492336 + 1.5 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -24500 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 258-34 chrX 39882353 39882643 + 1.5 NA Intergenic MLT1I|LTR|ERVL-MaLR 44937 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 248-8 chr18 8132383 8132745 + 1.5 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 234470 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 126.5-86 chr5 29823398 29823496 + 1.5 NA Intergenic Intergenic -57113 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 220.5-16 chr14 46257939 46258110 + 1.5 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 193865 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 297.75-18 chr7 3326089 3326451 + 1.5 NA intron (NM_152744, intron 1 of 44) L1ME4a|LINE|L1 25018 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 248.5-9 chr14 52112895 52113161 + 1.5 NA Intergenic Arthur1B|DNA|hAT-Tip100 -43969 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 161-3 chr1 80891577 80891735 + 1.5 NA Intergenic Intergenic 250369 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 144.5-29 chr12 111808201 111808388 + 1.5 NA intron (NM_000690, intron 12 of 12) L1MB8|LINE|L1 8460 NR_106819 102465456 NR_106819 ENSG00000274697 MIR6761 hsa-mir-6761 microRNA 6761 ncRNA 322-9 chr4 104212114 104212445 + 1.5 NA Intergenic L1MD3|LINE|L1 -278686 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 230-8 chr15 70391128 70391452 + 1.5 NA Intergenic L1ME2|LINE|L1 114638 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 171-58 chr8 115465159 115465284 + 1.5 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 202792 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 390.5-6 chr6 8069634 8069946 + 1.5 NA intron (NR_037618, intron 3 of 6) intron (NR_037618, intron 3 of 6) -5376 NM_001199322 63915 Hs.719272 NM_201280 ENSG00000188428 BLOC1S5 BLOS5|MU|MUTED biogenesis of lysosomal organelles complex 1 subunit 5 protein-coding 303-3 chr15 68146164 68146379 + 1.5 NA intron (NM_016166, intron 5 of 13) intron (NM_016166, intron 5 of 13) 59839 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 203.25-48 chr6 163764079 163764273 + 1.5 NA Intergenic MIR3|SINE|MIR -92692 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 156.5-91 chr8 129935528 129935691 + 1.5 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 4202 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 121.75-31 chr17 17344157 17344271 + 1.5 NA intron (NM_020201, intron 3 of 4) intron (NM_020201, intron 3 of 4) 40841 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 211.5-20 chr18 46156578 46156855 + 1.5 NA Intergenic Intergenic -17306 NM_001008239 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 200.5-52 chr5 10264437 10264683 + 1.5 NA intron (NM_012073, intron 10 of 10) intron (NM_012073, intron 10 of 10) 14023 NM_001306156 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 222.75-9 chr11 99344063 99344244 + 1.5 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -211992 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 205.5-24 chr2 23825266 23825432 + 1.5 NA intron (NR_125717, intron 15 of 28) intron (NR_125717, intron 15 of 28) 101774 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 204.75-40 chr6 48713643 48713841 + 1.5 NA Intergenic L2c|LINE|L2 -645053 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 185.5-13 chr11 8414981 8415257 + 1.5 NA intron (NM_001352388, intron 13 of 14) intron (NM_001352388, intron 13 of 14) -146332 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 198.25-12 chr14 72708871 72709083 + 1.5 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 183672 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 116.5-43 chr16 80871210 80871353 + 1.5 NA intron (NR_131948, intron 1 of 2) L1M4|LINE|L1 21315 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 133.5-65 chr3 54001922 54002093 + 1.5 NA Intergenic L2b|LINE|L2 -110148 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 277-2 chr1 175076228 175076511 + 1.5 NA intron (NM_022093, intron 1 of 18) intron (NM_022093, intron 1 of 18) 8536 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 302.5-9 chr20 61221362 61221690 + 1.5 NA Intergenic Intergenic -30735 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 258-22 chr3 192421072 192421315 + 1.5 NA intron (NM_004113, intron 2 of 5) MIR|SINE|MIR -12144 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 125-34 chr17 27303057 27303240 + 1.5 NA intron (NM_001348350, intron 2 of 7) intron (NM_001348350, intron 2 of 7) 9034 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 230.5-4 chr10 79469787 79470212 + 1.5 NA Intergenic Intergenic -24375 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 167.5 chr1 15020470 15020709 + 1.5 NA intron (NM_001370231, intron 3 of 8) L1ME3A|LINE|L1 74670 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 209.25-33 chr5 26452700 26452927 + 1.5 NA Intergenic Intergenic 585773 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 278.25-9 chr17 28158796 28159128 + 1.5 NA intron (NM_016231, intron 3 of 10) Tigger3b|DNA|TcMar-Tigger -67601 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 282.5-17 chr6 152958500 152958792 + 1.5 NA Intergenic LTR43|LTR|ERV1 24395 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 217.5-49 chr8 117762687 117762903 + 1.5 NA Intergenic Intergenic 158118 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 149-6 chr10 32051405 32051517 + 1.5 NA intron (NM_004521, intron 1 of 25) intron (NM_004521, intron 1 of 25) 4964 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 325.5-11 chr8 64389427 64389735 + 1.5 NA Intergenic Intergenic 10432 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 307-16 chr6 133081252 133081694 + 1.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -6607 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 448.5-3 chr5 166946068 166946644 + 1.5 NA Intergenic AluSc|SINE|Alu -19986 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 114.5-100 chr7 106318808 106318894 + 1.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -33868 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 222.75-25 chr2 229336228 229336391 + 1.5 NA Intergenic Intergenic -65022 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 211.25-10 chr11 77963721 77963928 + 1.5 NA intron (NM_033547, intron 4 of 22) AluJb|SINE|Alu 30844 NM_033547 92105 Hs.533723 NM_033547 ENSG00000149262 INTS4 INT4|MST093 integrator complex subunit 4 protein-coding 303.75-4 chr22 35503192 35503540 + 1.5 NA Intergenic Intergenic -37128 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 192.5-18 chr14 44789832 44790039 + 1.5 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 9191 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 180-58 chr6 11772074 11772315 + 1.5 NA intron (NM_001143948, intron 1 of 6) intron (NM_001143948, intron 1 of 6) 6853 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 142-12 chr11 35366561 35366707 + 1.5 NA intron (NM_001195728, intron 1 of 11) LTR16C|LTR|ERVL 52924 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 280.5-10 chr19 33175355 33175650 + 1.5 NA exon (NM_173479, exon 11 of 11) exon (NM_173479, exon 11 of 11) -18828 NM_002333 4037 Hs.515340 NM_002333 ENSG00000130881 LRP3 - LDL receptor related protein 3 protein-coding 163-10 chr14 20258193 20258345 + 1.5 NA Intergenic Charlie17|DNA|hAT-Charlie 15477 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 181.5-41 chr2 180119456 180119593 + 1.5 NA Intergenic Intergenic -112227 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 180-38 chr2 143849080 143849238 + 1.5 NA Intergenic Intergenic -87908 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 136-58 chr6 64001599 64001738 + 1.5 NA intron (NM_001292009, intron 33 of 43) (TTAA)n|Simple_repeat|Simple_repeat 194832 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 228-11 chr13 26498452 26498722 + 1.5 NA Intergenic Intergenic -59096 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 156-70 chr9 21541971 21542176 + 1.5 NA intron (NR_152877, intron 1 of 3) intron (NR_152877, intron 1 of 3) 17725 NR_152879 554202 Hs.458096 NR_027054 MIR31HG LncHIFCAR|hsa-lnc-31 MIR31 host gene ncRNA 280-14 chr2 193979462 193979723 + 1.5 NA Intergenic L1MD|LINE|L1 -364677 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 185.5-41 chr2 179280369 179280533 + 1.5 NA Intergenic L1MA2|LINE|L1 -15619 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 208-36 chr5 128117006 128117275 + 1.5 NA intron (NM_001046, intron 4 of 26) L1MC5|LINE|L1 33374 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 182-15 chr14 79322373 79322562 + 1.5 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 43087 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 241.5-28 chr4 112495623 112495927 + 1.5 NA Intergenic Intergenic -19604 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 187.75-24 chr2 149361129 149361356 + 1.5 NA intron (NM_194317, intron 1 of 4) MER34C_|LTR|ERV1 30655 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 195.75-11 chr12 113089508 113089747 + 1.5 NA intron (NM_004416, intron 2 of 8) intron (NM_004416, intron 2 of 8) 31770 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 261-29 chr22 47822188 47822548 + 1.5 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 190694 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 224-18 chr22 28451404 28451613 + 1.5 NA intron (NM_001145418, intron 2 of 22) MER6B|DNA|TcMar-Tigger -8361 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 162.75-45 chr3 111206437 111206586 + 1.5 NA Intergenic HERV16-int|LTR|ERVL 134695 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 482 chr2 95222332 95222970 + 1.5 NA Intergenic L1ME1|LINE|L1 -51798 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 259-4 chr1 200255132 200255361 + 1.5 NA Intergenic L2a|LINE|L2 118546 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 262.75-13 chr20 42834603 42834949 + 1.5 NA intron (NM_133170, intron 2 of 31) L1MC3|LINE|L1 -133967 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 276.5-16 chr7 110908446 110908785 + 1.5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -182391 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 199.25-38 chr7 144042995 144043136 + 1.5 NA Intergenic Intergenic -7337 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 292.25-8 chr3 94595856 94596269 + 1.5 NA Intergenic Intergenic -342201 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 267.5-34 chr8 121130548 121130896 + 1.5 NA Intergenic Intergenic -318676 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 336 chr1 80977338 80977719 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -328664 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 319-11 chr8 140413966 140414204 + 1.5 NA intron (NM_001321646, intron 4 of 21) intron (NM_001321646, intron 4 of 21) 43659 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 327.25-4 chr3 109004957 109005297 + 1.5 NA exon (NM_014429, exon 19 of 28) exon (NM_014429, exon 19 of 28) -51248 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 178-22 chr16 75446542 75446756 + 1.5 NA 3' UTR (NM_145254, exon 3 of 3) 3' UTR (NM_145254, exon 3 of 3) -13146 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 232-24 chr6 113372309 113372624 + 1.5 NA Intergenic Intergenic 60981 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 136.5-93 chr5 133348839 133348970 + 1.5 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 78802 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 209.25-19 chr2 193122757 193122970 + 1.5 NA Intergenic Intergenic 373018 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 151.5-2 chr1 50734823 50734940 + 1.5 NA intron (NM_007051, intron 6 of 18) intron (NM_007051, intron 6 of 18) 225386 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 257-13 chr5 27182571 27182836 + 1.5 NA Intergenic Intergenic -144117 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 277.5-15 chr5 32383056 32383333 + 1.5 NA intron (NM_016107, intron 15 of 19) intron (NM_016107, intron 15 of 19) 11281 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 180-44 chr21 34156165 34156387 + 1.5 NA Intergenic Plat_L3|LINE|CR1 -24401 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 212.25-4 chr1 187451534 187451814 + 1.5 NA intron (NR_132374, intron 1 of 2) MLT1H1|LTR|ERVL-MaLR 8046 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 180-3 chr1 38493927 38494106 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 18820 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 247-30 chr7 14957413 14957626 + 1.5 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 17339 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 147.75-35 chr2 54481742 54481905 + 1.5 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 25496 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 147-58 chr4 24645135 24645280 + 1.5 NA Intergenic Intergenic -60653 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 266.5-6 chr11 16967075 16967298 + 1.5 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) -41164 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 209-7 chr12 59140326 59140582 + 1.5 NA Intergenic Intergenic -219916 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 298.75-9 chr7 75845513 75845878 + 1.5 NA Intergenic Intergenic -22323 NM_001371193 273.75-11 chr3 17067016 17067245 + 1.5 NA intron (NM_015184, intron 4 of 5) L1MC5a|LINE|L1 133934 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 169-46 chr5 154603454 154603633 + 1.5 NA Intergenic MIRb|SINE|MIR -7471 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 124.5-50 chr2 12452391 12452520 + 1.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 253325 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 170-28 chr21 15211752 15211927 + 1.5 NA Intergenic Intergenic -146839 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 240.75-3 chr1 104213822 104214039 + 1.5 NA Intergenic Intergenic 140907 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 261-3 chr1 230436557 230436756 + 1.5 NA Intergenic Intergenic -10324 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 349.25-4 chr6 70562907 70563286 + 1.5 NA Intergenic Intergenic -3834 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 218-42 chr6 72683839 72684178 + 1.5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 53513 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 181-3 chr1 182525430 182525637 + 1.5 NA intron (NM_001366934, intron 11 of 22) L1M4a2|LINE|L1 63723 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 196.25-59 chr6 156102392 156102530 + 1.5 NA Intergenic Intergenic 155664 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 251-24 chr5 15303275 15303539 + 1.5 NA Intergenic Intergenic -36847 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 185-36 chr5 159393620 159393902 + 1.5 NA Intergenic Intergenic 62243 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 130.5-32 chr13 107568908 107569048 + 1.5 NA intron (NM_001080396, intron 1 of 2) L1MD2|LINE|L1 -37730 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 370.5-4 chr14 66606672 66606952 + 1.5 NA intron (NM_001024218, intron 1 of 21) L1PA16|LINE|L1 99405 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 208.5-4 chr1 185732082 185732254 + 1.5 NA Intergenic L1MEc|LINE|L1 -2223 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 173.5-69 chr3 143914592 143914799 + 1.5 NA Intergenic L1MA2|LINE|L1 -57103 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 227.25-4 chr10 86360729 86360985 + 1.5 NA intron (NM_017551, intron 2 of 15) MIRb|SINE|MIR 5938 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 236.25-44 chr8 135488644 135488872 + 1.5 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 31302 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 210.25-15 chr14 68379293 68379472 + 1.5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 249405 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 271.5-6 chr14 68131963 68132236 + 1.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 308507 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 146.75-48 chr5 127344578 127344809 + 1.5 NA intron (NM_001308121, intron 4 of 13) intron (NM_001308121, intron 4 of 13) 53897 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 219.75-32 chr5 76847669 76847889 + 1.5 NA Intergenic Intergenic -2235 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 322.25-14 chr7 49128355 49128671 + 1.5 NA Intergenic Intergenic 203966 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 233.25-8 chr14 72644335 72644579 + 1.5 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 127637 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 268-8 chr14 25264694 25264903 + 1.5 NA Intergenic AluSg|SINE|Alu -214501 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 225-40 chr8 33057482 33057651 + 1.5 NA Intergenic L1PA16|LINE|L1 335731 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 225.5-39 chr5 28099213 28099451 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 188333 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 337-6 chr17 60410464 60410734 + 1.5 NA Intergenic AluY|SINE|Alu -11890 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 235.5-39 chr4 84191722 84191902 + 1.5 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 107357 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 252.75-4 chr11 12535821 12536067 + 1.5 NA TTS (NM_018222) TTS (NM_018222) -138477 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 197-20 chr16 81054924 81055157 + 1.5 NA intron (NM_001100873, intron 3 of 3) intron (NM_001100873, intron 3 of 3) 17842 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 213-19 chr15 77301819 77302183 + 1.5 NA intron (NM_024776, intron 1 of 7) L1MC3|LINE|L1 -76597 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 122-39 chr2 106627552 106627652 + 1.5 NA Intergenic Intergenic 140238 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 214-24 chr19 39114204 39114375 + 1.5 NA Intergenic L1MA1|LINE|L1 -11497 NM_005884 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 135-8 chr1 195378817 195378912 + 1.5 NA Intergenic Intergenic 709851 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 206-32 chr6 42781234 42781461 + 1.5 NA intron (NM_001318819, intron 1 of 13) intron (NM_001318819, intron 1 of 13) -2149 NR_134654 401261 Hs.656652 NM_001004322 LOC401261 - uncharacterized LOC401261 ncRNA 155.25-2 chr1 164132438 164132623 + 1.5 NA Intergenic MIRc|SINE|MIR -426830 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 221.25 chr1 111525963 111526127 + 1.5 NA intron (NM_001081976, intron 1 of 5) L1ME1|LINE|L1 -15964 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 302.25-7 chr2 44855720 44855972 + 1.5 NA Intergenic L1MEi|LINE|L1 83042 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 300.75-2 chr10 57462392 57462772 + 1.5 NA Intergenic Intergenic -158023 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 463.25 chr10 64388755 64389289 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -436506 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 282-8 chr11 132999892 133000280 + 1.5 NA intron (NM_001012393, intron 1 of 7) AluSx3|SINE|Alu -56318 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 136-11 chr11 103655714 103655809 + 1.5 NA Intergenic Intergenic -194145 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 167.25-42 chr22 24923102 24923261 + 1.5 NA intron (NM_001098498, intron 23 of 23) MER119|DNA|hAT-Charlie 23514 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 263.25-16 chr5 129433106 129433330 + 1.5 NA Intergenic THE1B|LTR|ERVL-MaLR -27080 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 155.5-27 chr12 1107282 1107446 + 1.5 NA intron (NR_027948, intron 4 of 19) L2a|LINE|L2 79616 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 235.5-5 chr1 171368117 171368358 + 1.5 NA Intergenic Intergenic 29341 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 214.25 chr1 72357647 72357808 + 1.5 NA Intergenic L1M3d|LINE|L1 -75188 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 212.25-30 chr4 1021827 1022033 + 1.5 NA intron (NM_001370296, intron 2 of 6) intron (NM_001370296, intron 2 of 6) 9466 NM_021923 53834 Hs.193326 NM_021923 ENSG00000127418 FGFRL1 FGFR-5|FGFR5|FHFR fibroblast growth factor receptor like 1 protein-coding 340-3 chr17 40136441 40136873 + 1.5 NA 3' UTR (NM_001365920, exon 8 of 8) 3' UTR (NM_001365920, exon 8 of 8) -3880 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 CASC3 exon junction complex subunit protein-coding 159-32 chr2 21745752 21745862 + 1.5 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -35155 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 289.5-22 chr6 90694268 90694723 + 1.5 NA Intergenic L2b|LINE|L2 -107423 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 237-23 chr3 88493650 88493855 + 1.5 NA Intergenic Intergenic 155296 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 238.75-4 chr13 25932719 25933209 + 1.5 NA intron (NM_016529, intron 33 of 36) AluSx|SINE|Alu 118096 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 152-59 chr7 95155734 95155953 + 1.5 NA intron (NM_017650, intron 4 of 15) LTR37B|LTR|ERV1 168689 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 203.5-43 chr5 92725262 92725448 + 1.5 NA Intergenic L1ME3A|LINE|L1 845988 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 126.75-14 chr11 11567867 11567955 + 1.5 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 54094 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 167.5-92 chr9 25411860 25412001 + 1.5 NA Intergenic Intergenic 266928 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 295-16 chr8 70358109 70358488 + 1.5 NA intron (NM_001321703, intron 1 of 22) L1MB5|LINE|L1 45092 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 278.25-18 chr5 35719461 35719718 + 1.5 NA intron (NM_024867, intron 20 of 36) MER61-int|LTR|ERV1 101726 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 194.25-42 chr5 78352906 78353079 + 1.5 NA Intergenic L2a|LINE|L2 7549 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 274.5-30 chr5 43305169 43305475 + 1.5 NA intron (NM_002130, intron 1 of 9) intron (NM_002130, intron 1 of 9) 7859 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 221.25-8 chr14 42517483 42517673 + 1.5 NA Intergenic MIRb|SINE|MIR 910722 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 185-22 chr20 33084562 33084753 + 1.5 NA intron (NM_182519, intron 3 of 15) L1ME4a|LINE|L1 3145 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 293.25-2 chr10 87532641 87532967 + 1.5 NA intron (NM_001178118, intron 4 of 4) L1MC1|LINE|L1 24971 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 159.75-24 chr2 23764285 23764444 + 1.5 NA intron (NR_125717, intron 24 of 28) MER5A|DNA|hAT-Charlie 162759 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 258.5-8 chr17 78456664 78456922 + 1.5 NA intron (NM_173628, intron 62 of 80) intron (NM_173628, intron 62 of 80) -28117 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 309.75-7 chr18 2923927 2924155 + 1.5 NA intron (NM_014646, intron 15 of 19) intron (NM_014646, intron 15 of 19) 22582 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 173.75-44 chr6 141141764 141142000 + 1.5 NA Intergenic Intergenic 458068 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 126-65 chr4 149742124 149742249 + 1.5 NA intron (NM_001363507, intron 3 of 13) Charlie5|DNA|hAT-Charlie 73657 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 148.5-7 chr10 45584331 45584564 + 1.5 NA intron (NM_145021, intron 1 of 6) L1M5|LINE|L1 10459 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 150.5-69 chr5 2766321 2766515 + 1.5 NA Intergenic AluSp|SINE|Alu 14287 NM_178569 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 175.5-81 chr8 124254469 124254597 + 1.5 NA Intergenic Intergenic -7135 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 167.5-12 chr10 109088974 109089146 + 1.5 NA Intergenic L1MC4|LINE|L1 834186 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 176.25-51 chr4 41551419 41551576 + 1.5 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 13340 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 208.5-53 chr4 37216668 37216981 + 1.5 NA Intergenic Intergenic 25167 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 226.5-22 chr18 49180031 49180286 + 1.5 NA intron (NM_001353210, intron 13 of 16) intron (NM_001353210, intron 13 of 16) -130390 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 245.5-23 chr3 182573413 182573654 + 1.5 NA Intergenic L1M2c|LINE|L1 -66409 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 225.75-10 chr14 69529649 69529816 + 1.5 NA 3' UTR (NM_001161498, exon 13 of 13) 3' UTR (NM_001161498, exon 13 of 13) 45004 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 331.75-2 chr10 66616353 66616732 + 1.5 NA intron (NM_001127384, intron 10 of 17) L3b|LINE|CR1 -309494 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 206.25-19 chr21 15185389 15185541 + 1.5 NA Intergenic Intergenic -120465 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 126-2 chr1 116826891 116827052 + 1.5 NA Intergenic Intergenic 72541 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 224-9 chr16 58037718 58037920 + 1.5 NA intron (NM_002428, intron 2 of 9) MER117|DNA|hAT-Charlie 12065 NM_002428 4324 Hs.80343 NM_002428 ENSG00000102996 MMP15 MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 protein-coding 289-2 chr10 18814874 18815154 + 1.5 NA Intergenic L1MC|LINE|L1 155583 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 415 chr22 45127995 45128608 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL 24283 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 214.5-30 chr21 30150822 30151062 + 1.5 NA Intergenic Intergenic 15863 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 284.75-12 chr8 77700151 77700446 + 1.5 NA Intergenic L2|LINE|L2 249601 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 167-22 chr17 52224546 52224666 + 1.5 NA Intergenic Intergenic -64589 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 322.5-10 chr2 219823178 219823543 + 1.5 NA Intergenic MIRb|SINE|MIR 81529 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 211.5-36 chr4 146475426 146475644 + 1.5 NA intron (NM_032128, intron 4 of 4) intron (NM_032128, intron 4 of 4) 46405 NM_001300842 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 220.5-45 chr8 65723299 65723487 + 1.5 NA intron (NM_001242318, intron 12 of 12) intron (NM_001242318, intron 12 of 12) 53520 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 221-24 chr20 35957971 35958129 + 1.5 NA Intergenic Intergenic -2691 NM_016558 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 257.25-20 chr7 52271312 52271626 + 1.5 NA Intergenic L2b|LINE|L2 -764164 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 252.75-23 chr5 33675584 33675861 + 1.5 NA intron (NM_001324512, intron 5 of 21) intron (NM_001324512, intron 5 of 21) 216268 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 288.75-19 chr9 97654166 97654384 + 1.5 NA intron (NM_001351507, intron 10 of 21) Tigger1|DNA|TcMar-Tigger 20454 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 229.75-11 chr15 65769483 65769684 + 1.5 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 22710 NM_001144823 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 252-9 chr15 61543690 61544085 + 1.5 NA Intergenic Intergenic -186031 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 165-7 chr10 108749810 108749997 + 1.5 NA Intergenic Intergenic -680610 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 253.5-13 chr14 29637337 29637565 + 1.5 NA intron (NM_001330069, intron 7 of 18) intron (NM_001330069, intron 7 of 18) 289645 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 177.5-49 chr3 163255276 163255414 + 1.5 NA intron (NR_033945, intron 2 of 6) MIRc|SINE|MIR 47956 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 192-36 chr4 33063059 33063418 + 1.5 NA Intergenic Intergenic 712200 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 179-56 chr8 54839139 54839433 + 1.5 NA Intergenic Intergenic 223190 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 360.75-6 chr3 39611059 39611500 + 1.5 NA Intergenic Intergenic 109213 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 237-8 chr12 6494636 6494987 + 1.5 NA intron (NM_014865, intron 1 of 31) MIRc|SINE|MIR 709 NM_014865 9918 Hs.5719 NM_014865 ENSG00000010292 NCAPD2 CAP-D2|CNAP1|MCPH21|hCAP-D2 non-SMC condensin I complex subunit D2 protein-coding 131-53 chr5 26930159 26930274 + 1.5 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 108370 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 121.75-34 chr19 7000197 7000331 + 1.5 NA Intergenic Intergenic 6151 NR_024372 497049 Hs.367930 NM_001011541 FLJ25758 - microtubule affinity regulating kinase 1 pseudogene pseudo 281.75-13 chr4 167251798 167252069 + 1.5 NA Intergenic Intergenic -17343 NM_001204354 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 216.75-44 chr8 109607336 109607534 + 1.5 NA intron (NM_001099754, intron 3 of 6) intron (NM_001099754, intron 3 of 6) 627 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 328.5-6 chr14 84078548 84078865 + 1.5 NA Intergenic LTR16B2|LTR|ERVL -1193226 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 325.75-11 chr8 58484906 58485286 + 1.5 NA Intergenic Tigger16a|DNA|TcMar-Tigger 15067 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 183-69 chr8 60801158 60801316 + 1.5 NA intron (NM_017780, intron 5 of 37) intron (NM_017780, intron 5 of 37) 59978 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 249-24 chr22 34831924 34832125 + 1.5 NA intron (NR_138042, intron 3 of 4) AluY|SINE|Alu 165892 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 309 chr10 7265471 7265760 + 1.5 NA intron (NM_001029880, intron 7 of 20) intron (NM_001029880, intron 7 of 20) -78831 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 323.25-7 chr21 21363440 21363705 + 1.5 NA intron (NM_001352592, intron 9 of 18) intron (NM_001352592, intron 9 of 18) 216410 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 201-10 chr11 41565758 41565944 + 1.5 NA Intergenic L1MB1|LINE|L1 -106199 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 370-4 chr14 48859898 48860435 + 1.5 NA Intergenic L1M5|LINE|L1 726214 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 148-2 chr1 202582344 202582506 + 1.5 NA 3' UTR (NM_001197131, exon 7 of 7) 3' UTR (NM_001197131, exon 7 of 7) 42311 NM_001197131 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 233.5-22 chr17 65842001 65842264 + 1.5 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) -15589 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 281.5-6 chr16 49437783 49438073 + 1.5 NA Intergenic L2a|LINE|L2 64124 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 151.5-35 chr2 38237802 38237935 + 1.5 NA Intergenic L1ME3F|LINE|L1 106763 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 210-28 chr5 42534802 42535047 + 1.5 NA intron (NM_001242400, intron 2 of 10) L1PB1|LINE|L1 -13119 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 222.5-25 chr2 145685199 145685381 + 1.5 NA Intergenic Intergenic -901767 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 309.75-6 chr17 31329706 31329998 + 1.5 NA intron (NM_001042492, intron 38 of 57) intron (NM_001042492, intron 38 of 57) -8230 NM_001003927 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 175.5 chr1 22461414 22461581 + 1.5 NA intron (NM_001083621, intron 2 of 18) intron (NM_001083621, intron 2 of 18) 9646 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 221.25-19 chr20 23503737 23503915 + 1.5 NA Intergenic L2|LINE|L2 12709 NM_005492 10047 Hs.121602 NM_005492 ENSG00000125815 CST8 CRES|CTES5 cystatin 8 protein-coding 205-30 chr3 141324948 141325226 + 1.5 NA intron (NM_001080412, intron 1 of 7) Mam_R4|LINE|Dong-R4 901 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 137.5-52 chr2 25678035 25678165 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR -4426 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 208.5-52 chr3 117311602 117311801 + 1.5 NA Intergenic Intergenic 379224 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 231-32 chr5 129390130 129390344 + 1.5 NA Intergenic Intergenic 6910 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 229-20 chr20 40893703 40894123 + 1.5 NA Intergenic Intergenic -86800 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 178.25-65 chr8 131366103 131366244 + 1.5 NA Intergenic Intergenic -325264 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 225.25-2 chr10 11031410 11031683 + 1.5 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 12790 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 192.75-2 chr1 207086726 207086977 + 1.5 NA Intergenic Intergenic -2009 NM_001017365 725 Hs.99886 NM_000716 ENSG00000123843 C4BPB C4BP complement component 4 binding protein beta protein-coding 208.75-17 chr20 13542362 13542565 + 1.5 NA intron (NM_001323602, intron 4 of 9) L1MEd|LINE|L1 96469 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 224-21 chr3 83817097 83817308 + 1.5 NA Intergenic Intergenic 1052373 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 237.25-20 chr4 43638934 43639177 + 1.5 NA Intergenic L2c|LINE|L2 -146512 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 137.25-42 chr2 60270698 60270840 + 1.5 NA Intergenic Intergenic 112267 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 309.5-5 chr12 20833849 20834152 + 1.5 NA intron (NM_001349920, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat 11452 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 243.75-29 chr8 19806885 19807228 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -10093 NM_001353509 55174 Hs.512627 NM_018142 ENSG00000104613 INTS10 C8orf35|INT10 integrator complex subunit 10 protein-coding 343-10 chr5 37332421 37332774 + 1.5 NA intron (NM_001278312, intron 13 of 33) intron (NM_001278312, intron 13 of 33) 38509 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 200.5-46 chr3 168246542 168246720 + 1.5 NA Intergenic Intergenic -2891 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 217.5-48 chr8 115261342 115261624 + 1.5 NA Intergenic Intergenic 406530 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 172-37 chr5 43545669 43545860 + 1.5 NA intron (NM_006451, intron 3 of 10) HAL1|LINE|L1 11313 NM_006451 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 635.5 chr9 36908359 36909126 + 1.5 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -15211 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 134-36 chr2 118517305 118517402 + 1.5 NA Intergenic L1MEg|LINE|L1 85613 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 142.5-73 chr4 157310011 157310117 + 1.5 NA intron (NM_001083620, intron 3 of 15) L3b|LINE|CR1 89336 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 307.25-6 chr3 83988317 83988674 + 1.5 NA Intergenic (AATATT)n|Simple_repeat|Simple_repeat 881080 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 161.5-48 chr2 111075786 111076123 + 1.5 NA intron (NM_001371254, intron 17 of 18) L1MD2|LINE|L1 39634 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 179-24 chr15 90463736 90463911 + 1.5 NA intron (NM_003870, intron 15 of 37) intron (NM_003870, intron 15 of 37) -66100 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 214-31 chr4 63240487 63240705 + 1.5 NA Intergenic Intergenic -1078831 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 157.5-84 chr5 129539995 129540139 + 1.5 NA intron (NM_133638, intron 6 of 22) intron (NM_133638, intron 6 of 22) -79378 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 117.5-47 chr2 37310028 37310112 + 1.5 NA intron (NM_005813, intron 1 of 17) intron (NM_005813, intron 1 of 17) 7014 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 125-86 chr6 157686743 157686871 + 1.5 NA Intergenic Intergenic -136439 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 197-9 chr12 48974311 48974470 + 1.5 NA Intergenic Intergenic -2655 NM_003394 7480 Hs.91985 NM_003394 ENSG00000169884 WNT10B SHFM6|STHAG8|WNT-12 Wnt family member 10B protein-coding 230.5-8 chr11 85989294 85989493 + 1.5 NA intron (NM_001008660, intron 12 of 19) intron (NM_001008660, intron 12 of 19) 79691 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 185.5-5 chr1 167566076 167566258 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -12405 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 234-48 chr9 98535785 98535978 + 1.5 NA intron (NM_005458, intron 3 of 18) L1MC1|LINE|L1 173054 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 231-21 chr22 39419195 39419375 + 1.5 NA intron (NM_153497, intron 6 of 10) intron (NM_153497, intron 6 of 10) -12875 NR_040535 100506472 Hs.729080 NR_040535 LOC100506472 - uncharacterized LOC100506472 ncRNA 397.75-3 chr5 140312169 140312457 + 1.5 NA Intergenic Intergenic -9212 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 163.25-15 chr11 94484199 94484436 + 1.5 NA intron (NM_001330347, intron 4 of 19) L1MD3|LINE|L1 9527 NM_001330347 4361 Hs.192649 NM_005590 ENSG00000020922 MRE11 ATLD|HNGS1|MRE11A|MRE11B MRE11 homolog, double strand break repair nuclease protein-coding 278.25-14 chr3 30608430 30608694 + 1.5 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 1961 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 243.25-14 chr5 53731619 53731870 + 1.5 NA Intergenic L1MC5a|LINE|L1 87938 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 171.5-77 chr6 71942624 71942816 + 1.5 NA intron (NM_001350412, intron 1 of 2) intron (NM_001350412, intron 1 of 2) 56017 NM_001350411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 234.25-21 chr3 72302740 72303024 + 1.5 NA Intergenic MIR|SINE|MIR 143741 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 139.5-54 chr22 28991911 28992044 + 1.5 NA intron (NM_001206998, intron 2 of 8) AluJr4|SINE|Alu 39499 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 350-2 chr2 17737319 17737605 + 1.5 NA intron (NM_024624, intron 4 of 26) intron (NM_024624, intron 4 of 26) 16348 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 329.25-2 chr17 13481391 13481653 + 1.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 62124 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 384.5-3 chr8 127998107 127998386 + 1.5 NA intron (NR_003367, intron 5 of 8) L1MC3|LINE|L1 -10652 NR_031611 100302170 NR_031611 ENSG00000283200 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 143.25-15 chr11 99135281 99135448 + 1.5 NA intron (NM_001243270, intron 1 of 23) L2b|LINE|L2 114415 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 269-10 chr20 39924086 39924397 + 1.5 NA Intergenic L1MD3|LINE|L1 -80220 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 329.25 chr12 41747041 41747475 + 1.5 NA Intergenic Intergenic -16931 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 225.5-43 chr6 25551655 25551916 + 1.5 NA intron (NM_001173977, intron 27 of 36) intron (NM_001173977, intron 27 of 36) -100430 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 131-19 chr14 28844108 28844306 + 1.5 NA Intergenic Intergenic -58420 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 280.25-10 chr2 165168149 165168506 + 1.5 NA intron (NM_006922, intron 5 of 27) intron (NM_006922, intron 5 of 27) 35723 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 294.25-12 chr7 33132975 33133204 + 1.5 NA intron (NM_001348044, intron 1 of 18) FLAM_C|SINE|Alu 3525 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 300-12 chr2 29742231 29742458 + 1.5 NA intron (NM_004304, intron 1 of 28) MamSINE1|SINE|tRNA-RTE 179242 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 229.25-25 chr7 26456021 26456195 + 1.5 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -56690 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 180.5-60 chr3 89971113 89971254 + 1.5 NA Intergenic Intergenic 863562 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 208.5-38 chr19 47550388 47550569 + 1.5 NA intron (NM_001277075, intron 3 of 16) intron (NM_001277075, intron 3 of 16) 22670 NM_001277075 84215 Hs.14161 NM_032255 ENSG00000118156 ZNF541 - zinc finger protein 541 protein-coding 228-30 chr4 98785182 98785359 + 1.5 NA Intergenic Intergenic 126368 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 201-45 chr6 20949739 20949909 + 1.5 NA intron (NM_017774, intron 9 of 15) AluSz|SINE|Alu 415367 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 164-64 chr8 82510450 82510640 + 1.5 NA Intergenic Intergenic -401559 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 300.75-4 chr16 10805101 10805479 + 1.5 NA intron (NR_134903, intron 1 of 8) AluSz|SINE|Alu 13504 NM_001079512 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 146.5-30 chr15 59563597 59563741 + 1.5 NA Intergenic L1ME3B|LINE|L1 -48114 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 360.5-7 chr3 147663163 147663634 + 1.5 NA Intergenic Intergenic 242071 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 231.25 chr1 168408225 168408466 + 1.5 NA intron (NR_037851, intron 3 of 3) L1MEg|LINE|L1 14311 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 245-31 chr6 124786064 124786264 + 1.5 NA intron (NM_001040214, intron 4 of 6) L1MDa|LINE|L1 -176381 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 179.5-44 chr16 62964548 62964768 + 1.5 NA Intergenic Intergenic -928220 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 151.5-25 chr12 85013605 85013790 + 1.5 NA TTS (NM_001100917) TTS (NM_001100917) 22580 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 121-17 chr12 39908124 39908257 + 1.5 NA non-coding (NR_135051, exon 19 of 19) non-coding (NR_135051, exon 19 of 19) 197891 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 133.5-66 chr3 63436464 63436623 + 1.5 NA intron (NR_046677, intron 2 of 4) intron (NR_046677, intron 2 of 4) -6769 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 161.5-36 chr15 63727406 63727605 + 1.5 NA intron (NM_003922, intron 17 of 77) intron (NM_003922, intron 17 of 77) 106443 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 236-2 chr10 60383458 60383747 + 1.5 NA intron (NM_001204403, intron 2 of 43) L2c|LINE|L2 6273 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 126-64 chr4 70740872 70740999 + 1.5 NA intron (NM_001345840, intron 1 of 13) MER46C|DNA|TcMar-Tigger 6525 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 148-10 chr10 119430987 119431134 + 1.5 NA intron (NM_005308, intron 7 of 15) intron (NM_005308, intron 7 of 15) 53088 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 125.75-81 chr9 86870141 86870224 + 1.5 NA Intergenic Intergenic 77324 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 238.5-36 chr8 21057822 21058005 + 1.5 NA Intergenic Intergenic 83927 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 151-58 chr6 3641062 3641337 + 1.5 NA Intergenic L1MA8|LINE|L1 110813 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 373.5-7 chr8 120157351 120157746 + 1.5 NA intron (NM_021110, intron 2 of 47) intron (NM_021110, intron 2 of 47) 32446 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 172.5-41 chr2 218939553 218939777 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -9028 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 214-18 chr14 58778238 58778422 + 1.5 NA Intergenic L1ME2z|LINE|L1 -49958 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 120-61 chr3 43850466 43850620 + 1.5 NA Intergenic L1MEc|LINE|L1 -158949 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 201-47 chr7 1927463 1927728 + 1.5 NA intron (NM_001013837, intron 17 of 18) L1MDa|LINE|L1 12976 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 185-35 chr5 62324611 62324835 + 1.5 NA intron (NM_001243952, intron 2 of 20) L1PA16|LINE|L1 18561 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 234.75-7 chr11 61120434 61120595 + 1.5 NA intron (NM_001346456, intron 5 of 10) intron (NM_001346456, intron 5 of 10) 18025 NM_014207 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 200-4 chr1 234666258 234666591 + 1.5 NA Intergenic Intergenic 20135 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 174.75-48 chr6 35591407 35591697 + 1.5 NA intron (NM_001145775, intron 7 of 11) intron (NM_001145775, intron 7 of 11) 73237 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 260-3 chr10 42802078 42802524 + 1.5 NA intron (NM_014753, intron 13 of 22) intron (NM_014753, intron 13 of 22) 19506 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 241.5 chr1 62848369 62848664 + 1.5 NA intron (NM_178221, intron 10 of 10) L1ME3Cz|LINE|L1 64384 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 253-12 chr18 6142662 6142971 + 1.5 NA intron (NM_001365769, intron 13 of 16) AluJr|SINE|Alu -113928 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 456.75 chr2 25037358 25037739 + 1.5 NA non-coding (NR_034113, exon 3 of 3) non-coding (NR_034113, exon 3 of 3) -4528 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 336.75-11 chr7 42430413 42430897 + 1.5 NA Intergenic Intergenic -193446 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 130.5-95 chr8 42519575 42519737 + 1.5 NA intron (NM_006749, intron 1 of 10) intron (NM_006749, intron 1 of 10) -18425 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 189-12 chr10 108339176 108339361 + 1.5 NA Intergenic Intergenic -269975 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 166-13 chr11 71183743 71183853 + 1.5 NA intron (NM_012309, intron 1 of 24) HERVL40-int|LTR|ERVL 40998 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 203.75-6 chr13 58119894 58120043 + 1.5 NA Intergenic Intergenic -45859 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 224-25 chr5 127995454 127995713 + 1.5 NA intron (NR_152803, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 87592 NR_152801 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 330-10 chr9 33014850 33015324 + 1.5 NA intron (NM_001368996, intron 1 of 7) L4_A_Mam|LINE|RTE-X 10033 NM_001368999 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 231.75-2 chr1 36781605 36781823 + 1.5 NA Intergenic Intergenic 252801 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 338-8 chr22 37505011 37505315 + 1.5 NA intron (NM_014550, intron 7 of 19) intron (NM_014550, intron 7 of 19) 14252 NM_014550 29775 Hs.57973 NM_014550 ENSG00000100065 CARD10 BIMP1|CARMA3 caspase recruitment domain family member 10 protein-coding 225.5-47 chr6 161304343 161304694 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -30457 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 222-40 chr7 2674369 2674640 + 1.5 NA Intergenic AluSx|SINE|Alu -5018 NM_133463 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 296.25-10 chr6 151976436 151976712 + 1.5 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 167467 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 145-46 chr3 77913056 77913211 + 1.5 NA Intergenic Intergenic 135830 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 203.5-49 chr8 111260302 111260463 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -24179 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 188-21 chr2 54776320 54776469 + 1.5 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 51382 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 243.75-22 chr4 172908259 172908491 + 1.5 NA intron (NM_001034845, intron 8 of 12) intron (NM_001034845, intron 8 of 12) -181497 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 145-37 chr2 142196474 142196597 + 1.5 NA Intergenic L2c|LINE|L2 -64834 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 208.5-77 chrX 56075250 56075456 + 1.5 NA intron (NM_001324104, intron 2 of 6) L1MB4|LINE|L1 -157003 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 161.75-4 chr10 66484331 66484517 + 1.5 NA intron (NM_001127384, intron 11 of 17) (TTTTATT)n|Simple_repeat|Simple_repeat -441612 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 137-56 chr4 87752304 87752413 + 1.5 NA Intergenic Intergenic -47196 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 153.5-79 chr5 120238928 120239068 + 1.5 NA Intergenic Intergenic -225280 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 425.75 chr11 79427233 79427588 + 1.5 NA intron (NM_001098816, intron 1 of 33) L1ME4a|LINE|L1 -5184 NR_049841 100847000 NR_049841 ENSG00000266570 MIR5579 - microRNA 5579 ncRNA 132.5-85 chr4 125540420 125540536 + 1.5 NA Intergenic L1M4|LINE|L1 33219 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 147.25-24 chr2 45116547 45116785 + 1.5 NA Intergenic Intergenic -107214 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 258-17 chr18 9568423 9568669 + 1.5 NA intron (NR_052003, intron 10 of 19) intron (NR_052003, intron 10 of 19) 46013 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 148.5-68 chr4 22144210 22144324 + 1.5 NA Intergenic L1PB1|LINE|L1 195399 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 169-35 chr21 45457600 45457816 + 1.5 NA intron (NM_130444, intron 1 of 41) intron (NM_130444, intron 1 of 41) 2186 NM_030582 80781 Hs.517356 NM_030582 ENSG00000182871 COL18A1 KNO|KNO1|KS collagen type XVIII alpha 1 chain protein-coding 135.25-75 chr5 54548860 54549087 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger 31214 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 236.5-24 chr2 61859389 61859669 + 1.5 NA Intergenic Intergenic -5469 NM_032180 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 273-26 chr6 74985590 74985994 + 1.5 NA Intergenic L1MEg|LINE|L1 142990 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 328-7 chr5 115230195 115230462 + 1.5 NA intron (NM_005023, intron 6 of 8) intron (NM_005023, intron 6 of 8) 32549 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 169.5-24 chr14 59270942 59271138 + 1.5 NA intron (NM_001270520, intron 2 of 24) intron (NM_001270520, intron 2 of 24) 7599 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 308.25-7 chr5 114271438 114271799 + 1.5 NA Intergenic Intergenic -90452 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 272.25-5 chr11 55590392 55590635 + 1.5 NA Intergenic Intergenic 13885 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 147-34 chr18 2411816 2412007 + 1.5 NA Intergenic MIRb|SINE|MIR 159594 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 178.5-10 chr12 118686205 118686396 + 1.5 NA Intergenic Intergenic 75379 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 202.5-38 chr4 165614238 165614478 + 1.5 NA Intergenic Intergenic -70281 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 196.5-57 chr5 15594798 15595015 + 1.5 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 20096 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 144-45 chr3 73504413 73504542 + 1.5 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -16845 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 231-23 chr3 71910473 71910783 + 1.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -125480 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 247-22 chr5 114420562 114420809 + 1.5 NA intron (NM_021614, intron 3 of 7) intron (NM_021614, intron 3 of 7) -12826 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 358-2 chr17 72435074 72435393 + 1.5 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 92422 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 229.5-43 chr6 42711946 42712268 + 1.5 NA intron (NM_000322, intron 1 of 2) L1MC5a|LINE|L1 10490 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 215.25-16 chr2 12429462 12429644 + 1.5 NA intron (NR_110196, intron 4 of 5) Kanga1c|DNA|TcMar-Tc2 230423 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 131-52 chr5 8634569 8634666 + 1.5 NA Intergenic L1M5|LINE|L1 173692 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 195-65 chr9 116108137 116108332 + 1.5 NA Intergenic Intergenic -45557 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 180.75-14 chr10 62088699 62089022 + 1.5 NA intron (NM_001244638, intron 6 of 6) intron (NM_001244638, intron 6 of 6) 39503 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 130-63 chr5 30732654 30732793 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -460963 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 152.5-40 chr16 2854596 2854729 + 1.5 NA intron (NM_022119, intron 4 of 5) intron (NM_022119, intron 4 of 5) 3508 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 serine protease 22 protein-coding 305.25-2 chr11 78973068 78973490 + 1.5 NA intron (NM_001098816, intron 6 of 33) L1MB8|LINE|L1 -398415 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 232.75-25 chr7 42219386 42219648 + 1.5 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 17692 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 167-61 chr7 52787673 52787796 + 1.5 NA Intergenic L1MEh|LINE|L1 -247899 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 195-58 chr7 87941338 87941778 + 1.5 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 7307 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 193-11 chr10 81443095 81443283 + 1.5 NA Intergenic L1MA2|LINE|L1 -432005 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 126-59 chr3 46672438 46672602 + 1.5 NA intron (NR_135622, intron 21 of 24) intron (NR_135622, intron 21 of 24) 21159 NM_147129 259173 Hs.517937 NM_147129 ENSG00000178038 ALS2CL RN49018 ALS2 C-terminal like protein-coding 296.25-2 chr13 93468275 93468569 + 1.5 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 241615 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 183.5-79 chr9 7931227 7931373 + 1.5 NA Intergenic Intergenic -131522 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 164.75-63 chr7 14642646 14642873 + 1.5 NA intron (NM_001350722, intron 13 of 25) intron (NM_001350722, intron 13 of 25) 198691 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 184.5-31 chr15 99522103 99522363 + 1.5 NA Intergenic L1MA4A|LINE|L1 -43184 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 157.5-18 chr12 29622306 29622483 + 1.5 NA intron (NM_001367875, intron 8 of 19) intron (NM_001367875, intron 8 of 19) -122701 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 266-19 chr7 37508269 37508508 + 1.5 NA Intergenic Intergenic -59062 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 178.75-18 chr16 34583027 34583260 + 1.5 NA Intergenic Intergenic -201663 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 199-48 chr8 108828709 108828939 + 1.5 NA Intergenic Intergenic -41230 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 290-5 chr12 129725639 129725938 + 1.5 NA intron (NM_133448, intron 1 of 8) MER68|LTR|ERVL 178237 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 293.75-3 chr11 78568822 78569292 + 1.5 NA intron (NM_024678, intron 2 of 13) intron (NM_024678, intron 2 of 13) 5807 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 203.25-19 chr14 72088807 72089010 + 1.5 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 155381 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 289.75-20 chr4 86431202 86431757 + 1.5 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 21716 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 142.75-23 chr12 76133715 76133837 + 1.5 NA Intergenic L1M5|LINE|L1 -49091 NM_001330232 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 268-30 chr8 117472503 117472690 + 1.5 NA Intergenic L2c|LINE|L2 -48117 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 246-17 chr3 78733819 78734123 + 1.5 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 285488 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 140-15 chr13 28262110 28262277 + 1.5 NA intron (NM_175854, intron 9 of 18) MIRb|SINE|MIR -123019 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 305.5 chr1 226606732 226607138 + 1.5 NA 3' UTR (NM_001003665, exon 4 of 4) 3' UTR (NM_001003665, exon 4 of 4) 58171 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 132.25-48 chr2 171016606 171016697 + 1.5 NA intron (NM_001136555, intron 10 of 18) intron (NM_001136555, intron 10 of 18) 50322 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 193.5-17 chr12 40894869 40895122 + 1.5 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -13362 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 177.75-56 chr7 101733908 101734084 + 1.5 NA Intergenic Intergenic -82011 NM_001202544 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 168.75-16 chr17 76721386 76721593 + 1.5 NA intron (NM_015167, intron 4 of 5) intron (NM_015167, intron 4 of 5) 5117 NM_001081461 23210 Hs.514505 NM_015167 ENSG00000070495 JMJD6 PSR|PTDSR|PTDSR1 jumonji domain containing 6, arginine demethylase and lysine hydroxylase protein-coding 176.25-46 chr3 114612650 114612845 + 1.5 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 11459 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 249.5-11 chr2 79473810 79474028 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie 26925 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 231.25-31 chr5 164342814 164343090 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 124450 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 229.5-36 chr4 65602902 65603216 + 1.5 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 66429 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 198-26 chr2 236036221 236036434 + 1.5 NA intron (NM_001037131, intron 13 of 17) intron (NM_001037131, intron 13 of 17) 132059 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 420.5-3 chr3 153217820 153218283 + 1.5 NA Intergenic Intergenic 55825 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 377.25-7 chr7 138755195 138755483 + 1.5 NA intron (NM_130840, intron 9 of 20) intron (NM_130840, intron 9 of 20) 18698 NM_130841 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 252.5-17 chr2 45255767 45256096 + 1.5 NA promoter-TSS (NR_033831) promoter-TSS (NR_033831) -990 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 252-17 chr2 148080787 148081019 + 1.5 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -59299 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 175.5-71 chr6 167985236 167985442 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie -8400 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 175.5-18 chr12 10377284 10377412 + 1.5 NA intron (NR_120430, intron 2 of 3) L1ME1|LINE|L1 12693 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 191-49 chr7 91503454 91503594 + 1.5 NA Intergenic Intergenic 239091 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 194.5-58 chr5 12350659 12350875 + 1.5 NA Intergenic Intergenic -224090 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 182-21 chr2 24365313 24365556 + 1.5 NA Intergenic MIRc|SINE|MIR -4898 NM_001348186 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 213-43 chr7 107573572 107573732 + 1.5 NA intron (NR_073005, intron 4 of 6) intron (NR_073005, intron 4 of 6) -6355 NM_001371355 150.75-55 chr4 158016209 158016378 + 1.5 NA Intergenic Intergenic -154459 NR_147407 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 189.75-26 chr21 25789471 25789605 + 1.5 NA Intergenic Intergenic -53884 NM_001320267 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 246.25 chr1 5125949 5126193 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 471462 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 324.5-5 chr14 45589687 45590235 + 1.5 NA Intergenic Intergenic 125641 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 143.5-105 chr8 135452165 135452345 + 1.5 NA Intergenic Intergenic -5201 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 210.5-32 chr2 112015676 112015845 + 1.5 NA intron (NM_006343, intron 15 of 18) L1ME1|LINE|L1 -39509 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 270.25-7 chr2 76104986 76105286 + 1.5 NA Intergenic MLT2A2|LTR|ERVL -394221 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 137-37 chr2 116056682 116056854 + 1.5 NA Intergenic Intergenic 712953 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 348.5-4 chr20 16170585 16171053 + 1.5 NA Intergenic MLT1H2|LTR|ERVL-MaLR -184937 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 165-46 chr6 44162835 44162965 + 1.5 NA intron (NM_007058, intron 1 of 22) L2c|LINE|L2 4080 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 144-2 chr1 43075590 43075703 + 1.5 NA Intergenic L1PB4|LINE|L1 -72258 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 282-10 chr14 25448766 25449041 + 1.5 NA Intergenic Intergenic -398606 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 126-53 chr20 60464339 60464456 + 1.5 NA Intergenic Intergenic 8579 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 144-62 chr5 179617330 179617452 + 1.5 NA intron (NM_001364234, intron 10 of 14).2 intron (NM_001364234, intron 10 of 14).2 6010 NM_001364243 3187 Hs.604001 NM_005520 ENSG00000169045 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 protein-coding 116.5-26 chr12 68456671 68456769 + 1.5 NA Intergenic Intergenic -5236 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 155.5-57 chr2 83370919 83371142 + 1.5 NA Intergenic Intergenic -151784 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 145-50 chr4 40214661 40214805 + 1.5 NA intron (NM_001278361, intron 2 of 3) MamRep605|LTR?|LTR? 17702 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 164-7 chr10 80270839 80271010 + 1.5 NA TTS (NM_000429) TTS (NM_000429) 18734 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 170.5-4 chr1 99415121 99415274 + 1.5 NA Intergenic MER68|LTR|ERVL 72607 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 195.75-52 chr7 45300319 45300561 + 1.5 NA Intergenic L1MA9|LINE|L1 142649 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 175.25-25 chr18 47531183 47531371 + 1.5 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 150781 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 143-57 chr5 64386676 64386821 + 1.5 NA Intergenic L1ME1|LINE|L1 -119267 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 254.25-4 chr1 202787818 202787992 + 1.5 NA intron (NM_001314042, intron 1 of 27) AluSx3|SINE|Alu 21565 NM_001347591 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 289-19 chr9 38634708 38634937 + 1.5 NA Intergenic L1MEg|LINE|L1 13734 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 131.5-53 chr20 57754860 57755089 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -43438 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 233.75 chr1 55133051 55133221 + 1.5 NA intron (NM_015306, intron 30 of 67) intron (NM_015306, intron 30 of 67) 82228 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 215-3 chr1 163520440 163520654 + 1.5 NA Intergenic L1MA3|LINE|L1 -97356 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 244-27 chr8 67057053 67057235 + 1.5 NA intron (NM_006837, intron 4 of 7) intron (NM_006837, intron 4 of 7) 4989 NM_006837 10987 Hs.491912 NM_006837 ENSG00000121022 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 283.75-16 chrUn_KI270333v1 1879 2122 + 1.5 NA NA SAR|Satellite|Satellite NA NA 246.5-4 chr14 86917402 86917729 + 1.5 NA intron (NR_038445, intron 3 of 4) L2|LINE|L2 11787 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 158.75-53 chr5 3280430 3280635 + 1.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 102697 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 125.75-78 chr8 131281462 131281686 + 1.5 NA Intergenic Intergenic -240665 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 259.25-8 chr3 124100976 124101157 + 1.5 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 6359 NM_003947 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 212.75-21 chr22 28559547 28559943 + 1.5 NA intron (NM_001145418, intron 2 of 22) L2a|LINE|L2 99876 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 239.5-27 chr7 47248652 47249027 + 1.5 NA Intergenic MER70A|LTR|ERVL 215964 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 331.75-3 chr11 76358947 76359283 + 1.5 NA intron (NM_004705, intron 3 of 4) L1MEh|LINE|L1 21850 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 418.5-6 chr6 53755422 53755947 + 1.5 NA Intergenic Intergenic -39321 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 292.5-8 chr4 75106057 75106379 + 1.5 NA Intergenic Intergenic -21510 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 119.5-128 chrX 66260001 66260143 + 1.5 NA intron (NM_001367233, intron 18 of 20) intron (NM_001367233, intron 18 of 20) 92322 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 171.25-14 chr14 49971627 49971826 + 1.5 NA Intergenic Intergenic 5327 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 162-5 chr1 239541442 239541676 + 1.5 NA intron (NM_001347716, intron 2 of 7) AluJb|SINE|Alu -87514 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 132.75-89 chr7 20361132 20361268 + 1.5 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -29438 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 261.5-27 chr6 122806543 122806839 + 1.5 NA intron (NM_001286138, intron 6 of 6) intron (NM_001286138, intron 6 of 6) 17433 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 257.25-22 chr8 127069854 127070055 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -9920 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 403.5-3 chr4 174353037 174353372 + 1.5 NA Intergenic Intergenic -68953 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 318.25-5 chr5 89748709 89749120 + 1.5 NA Intergenic L1MEc|LINE|L1 267806 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 165.5-23 chr13 73000958 73001160 + 1.5 NA intron (NR_146206, intron 16 of 16) intron (NR_146206, intron 16 of 16) -53917 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 246.5-7 chr18 12716701 12716896 + 1.5 NA intron (NM_147163, intron 3 of 6) MIR|SINE|MIR 13756 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 202.5-13 chr16 24544331 24544581 + 1.5 NA intron (NM_018703, intron 1 of 16) intron (NM_018703, intron 1 of 16) 4869 NM_032626 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 244.5-35 chr7 43491495 43491787 + 1.5 NA intron (NM_001287059, intron 15 of 27) AluSg|SINE|Alu 30901 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 259.75-21 chr8 31545175 31545438 + 1.5 NA Intergenic Intergenic -94446 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 148.5-79 chr5 13290558 13290703 + 1.5 NA Intergenic L1PA13|LINE|L1 -257744 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 166.75-15 chr14 33210573 33210693 + 1.5 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 271754 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 267.75-16 chr6 85590447 85590711 + 1.5 NA intron (NM_001350532, intron 1 of 29) Tigger2|DNA|TcMar-Tigger 3279 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 253.75-15 chr5 154700251 154700519 + 1.5 NA intron (NM_001367715, intron 1 of 17) MER96B|DNA|hAT-Tip100 -12458 NM_001367717 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 210.75-33 chr6 73834678 73834950 + 1.5 NA Intergenic L2c|LINE|L2 138611 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 205.75-17 chr18 2476346 2476594 + 1.5 NA Intergenic L1MCa|LINE|L1 95035 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 327.5-7 chr5 76566961 76567265 + 1.5 NA intron (NM_006633, intron 3 of 35) MIR|SINE|MIR 19704 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 198-35 chr4 67353758 67354041 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie 68101 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 203-24 chr3 97727352 97727530 + 1.5 NA intron (NM_001080448, intron 15 of 17) intron (NM_001080448, intron 15 of 17) -37080 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 245.5-24 chr4 16750349 16750602 + 1.5 NA TTS (NR_130734) TTS (NR_130734) 148170 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 114.75-87 chr6 71648575 71648738 + 1.5 NA Intergenic L1MEg|LINE|L1 227629 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 249.5-34 chrX 88426105 88426353 + 1.5 NA Intergenic Intergenic -320996 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 153.75-78 chr7 78807215 78807355 + 1.5 NA intron (NM_001301128, intron 2 of 20) Charlie1b|DNA|hAT-Charlie -201703 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 153.5-70 chr4 45505333 45505631 + 1.5 NA Intergenic Intergenic 618572 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 346.75-5 chr5 43566105 43566491 + 1.5 NA Intergenic PRIMA41-int|LTR|ERV1 -8879 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 157.5-94 chr8 96282985 96283101 + 1.5 NA intron (NM_001290225, intron 2 of 10) intron (NM_001290225, intron 2 of 10) 21141 NM_001290225 9791 Hs.292579 NM_014754 ENSG00000156471 PTDSS1 LMHD|PSS1|PSSA phosphatidylserine synthase 1 protein-coding 277.25-11 chr14 61192073 61192373 + 1.5 NA Intergenic Intergenic 89115 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 193-31 chr2 54551735 54551974 + 1.5 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -6540 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 219.5-21 chr17 42357909 42358154 + 1.5 NA intron (NM_213662, intron 1 of 23) intron (NM_213662, intron 1 of 23) 30411 NM_001369518 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 321.75-11 chr3 133708514 133708939 + 1.5 NA intron (NM_001354703, intron 4 of 22) (AT)n|Simple_repeat|Simple_repeat -37667 NM_001063 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 223-28 chr3 110891945 110892147 + 1.5 NA Intergenic Intergenic 177913 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 154.5-76 chr8 131072247 131072426 + 1.5 NA Intergenic Intergenic -31427 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 206-25 chr4 64529476 64529624 + 1.5 NA Intergenic L1PA15|LINE|L1 -120090 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 206.25-13 chr14 89195054 89195253 + 1.5 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 222080 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 177.25-9 chr11 70187421 70187764 + 1.5 NA intron (NM_018043, intron 25 of 25) intron (NM_018043, intron 25 of 25) -15571 NM_003824 8772 Hs.86131 NM_003824 ENSG00000168040 FADD GIG3|MORT1 Fas associated via death domain protein-coding 332-13 chr8 89300539 89300930 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 456977 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 133.5-86 chr5 4275549 4275705 + 1.5 NA Intergenic Intergenic -497854 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 190-19 chr18 67905601 67905747 + 1.5 NA Intergenic Intergenic -90852 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 216.25-10 chr12 109383151 109383351 + 1.5 NA Intergenic Intergenic -5468 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 232.5-34 chr4 152077119 152077298 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -23545 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 314-20 chr8 137018141 137018555 + 1.5 NA Intergenic Intergenic 395240 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 173.5-53 chr20 9556411 9556585 + 1.5 NA intron (NM_020341, intron 8 of 10) intron (NM_020341, intron 8 of 10) -41500 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 351.5-2 chr11 99232231 99232585 + 1.5 NA intron (NM_001243270, intron 1 of 23) L1PA10|LINE|L1 211459 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 183-57 chr5 15510920 15511087 + 1.5 NA intron (NM_001278317, intron 1 of 3) MIR|SINE|MIR 9565 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 507.75 chr4 82928958 82929513 + 1.5 NA intron (NR_110253, intron 10 of 10) intron (NR_110253, intron 10 of 10) -28319 NR_034076 100499177 Hs.728916 NR_034075 ENSG00000251022 THAP9-AS1 - THAP9 antisense RNA 1 ncRNA 243-28 chr6 147703780 147704020 + 1.5 NA Intergenic AluY|SINE|Alu 195210 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 248.25-23 chr3 81975714 81976034 + 1.5 NA Intergenic Intergenic -10268 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 144.5-68 chr3 709177 709444 + 1.5 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 117205 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 132.75-22 chr11 5858714 5858802 + 1.5 NA Intergenic Intergenic -1056 NM_001005168 390079 Hs.553738 NM_001005168 ENSG00000183269 OR52E8 OR11-54 olfactory receptor family 52 subfamily E member 8 protein-coding 146.75-33 chr3 185341493 185341820 + 1.5 NA intron (NM_001242317, intron 2 of 12) MLT1F1|LTR|ERVL-MaLR -21480 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 248.75 chr1 238071036 238071420 + 1.5 NA Intergenic Intergenic -180306 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 228-36 chr6 67131579 67131787 + 1.5 NA Intergenic Intergenic -923668 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 174-44 chr5 82593878 82594058 + 1.5 NA Intergenic Intergenic -246187 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 185.5-34 chr17 59230046 59230242 + 1.5 NA intron (NM_182569, intron 1 of 9) Tigger4|DNA|TcMar-Tigger 9633 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 189-21 chr16 1404046 1404258 + 1.5 NA intron (NR_160278, intron 2 of 15) intron (NR_160278, intron 2 of 15) 10552 NM_001193388 64718 Hs.643536 NM_001037125 ENSG00000059145 UNKL C16orf28|ZC3H5L|ZC3HDC5L unk like zinc finger protein-coding 270-11 chr17 55727040 55727225 + 1.5 NA intron (NM_001099640, intron 2 of 3) intron (NM_001099640, intron 2 of 3) -4268 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 198.25-36 chr5 36588853 36589125 + 1.5 NA Intergenic Intergenic -17366 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 233.5-32 chr3 8105931 8106232 + 1.5 NA Intergenic Intergenic -89774 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 147-59 chr4 45431231 45431379 + 1.5 NA Intergenic Intergenic 692749 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 172.5-14 chr14 30402400 30402624 + 1.5 NA Intergenic MIRc|SINE|MIR -156611 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 404.25-4 chr3 4372797 4373174 + 1.5 NA intron (NM_001164675, intron 7 of 7) intron (NM_001164675, intron 7 of 7) 69681 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 222-41 chr8 72416528 72416773 + 1.5 NA Intergenic L1M5|LINE|L1 -120575 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 256-8 chr11 95103633 95103821 + 1.5 NA intron (NM_015036, intron 1 of 1) MIRb|SINE|MIR 13881 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 276-9 chr2 29461004 29461358 + 1.5 NA intron (NM_004304, intron 4 of 28) Tigger1|DNA|TcMar-Tigger 14196 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 242-12 chr14 47789395 47789676 + 1.5 NA intron (NR_039996, intron 2 of 2) L1MEf|LINE|L1 5479 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 157.5-97 chrX 96785384 96785566 + 1.5 NA intron (NM_007309, intron 4 of 26) MLT1A1|LTR|ERVL-MaLR -98433 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 135.5-53 chr2 115183250 115183362 + 1.5 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 21151 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 210-10 chr13 95223691 95223857 + 1.5 NA intron (NM_001301830, intron 3 of 19) AluSx1|SINE|Alu 13430 NR_145733 109616987 NR_145733 SNORD13G - small nucleolar RNA, C/D box 13G snoRNA 206.5-24 chr2 13483884 13484119 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -476988 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 199.5-54 chr7 90262119 90262283 + 1.5 NA intron (NM_001039706, intron 4 of 22) intron (NM_001039706, intron 4 of 22) 17027 NM_001363438 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 324-6 chr7 106513999 106514396 + 1.5 NA Intergenic MIR|SINE|MIR 146961 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 295.5-18 chr4 61552904 61553217 + 1.5 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 350888 NM_001371342 301.5-10 chr20 49863240 49863494 + 1.5 NA promoter-TSS (NR_162136) promoter-TSS (NR_162136) -492 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 333.5-12 chr5 113225455 113225821 + 1.5 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 69300 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 213.75-31 chr20 17912130 17912298 + 1.5 NA Intergenic L2|LINE|L2 50732 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 163-14 chr16 19223746 19223954 + 1.5 NA intron (NM_001308157, intron 6 of 7) intron (NM_001308157, intron 6 of 7) 51515 NM_001308157 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 440.75-2 chr16 71806808 71807162 + 1.5 NA intron (NM_001128, intron 1 of 22) intron (NM_001128, intron 1 of 22) 1849 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 299.25-2 chr10 30542795 30543269 + 1.5 NA Intergenic Intergenic 86721 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 148.5-106 chr8 47141068 47141274 + 1.5 NA Intergenic MER89-int|LTR|ERV1 -48136 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 122.5-97 chr8 141838489 141838604 + 1.5 NA Intergenic L1MEf|LINE|L1 -52233 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 219-7 chr14 57264639 57264898 + 1.5 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 4137 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 196.25-66 chr8 144795545 144795807 + 1.5 NA Intergenic Intergenic -3200 NR_134285 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 221.75-30 chrX 49992531 49992780 + 1.5 NA intron (NM_001127899, intron 3 of 14) intron (NM_001127899, intron 3 of 14) -10493 NR_030241 693124 NR_030241 ENSG00000207758 MIR532 MIRN532|hsa-mir-532|mir-532 microRNA 532 ncRNA 130.5-3 chr1 57430057 57430161 + 1.5 NA intron (NM_001353980, intron 4 of 5) L1MA9|LINE|L1 -5188 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 149-14 chr14 72635311 72635487 + 1.5 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 118579 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 244.5-16 chr2 101597278 101597613 + 1.5 NA Intergenic L1ME3B|LINE|L1 -100258 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 222.25-5 chr10 77717504 77717697 + 1.5 NA Intergenic MIR|SINE|MIR -79792 NM_001271521 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 275.5-21 chr3 52412368 52412764 + 1.5 NA intron (NM_001321127, intron 1 of 10) MIR|SINE|MIR 1906 NM_001321127 51533 Hs.372719 NM_016483 ENSG00000010318 PHF7 HSPC045|HSPC226|NYD-SP6 PHD finger protein 7 protein-coding 139.5-49 chr20 3481021 3481142 + 1.5 NA intron (NM_001323332, intron 1 of 25) intron (NM_001323332, intron 1 of 25) 10063 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 209-14 chr2 129327558 129327813 + 1.5 NA Intergenic Intergenic -53794 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 115-72 chr7 88206235 88206318 + 1.5 NA 3' UTR (NM_003130, exon 8 of 8) 3' UTR (NM_003130, exon 8 of 8) -10384 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 250.5-15 chr17 59629701 59630026 + 1.5 NA intron (NM_001288653, intron 1 of 31) Kanga2_a|DNA|TcMar-Tc2 9968 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 271.5-15 chr21 21797507 21797769 + 1.5 NA TTS (NR_109958) TTS (NR_109958) 50653 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 245.75-12 chr4 22553097 22553307 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -37136 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 397.75-2 chr3 130324844 130325328 + 1.5 NA Intergenic L1ME1|LINE|L1 -20430 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 135-27 chr14 73879802 73879950 + 1.5 NA intron (NM_001146154, intron 6 of 9) intron (NM_001146154, intron 6 of 9) -6983 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 203.25 chr1 33447617 33447858 + 1.5 NA Intergenic LTR33|LTR|ERVL -24908 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 394.5-5 chr6 70313651 70314161 + 1.5 NA Intergenic Intergenic -10822 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 234-41 chr8 87380848 87381060 + 1.5 NA intron (NM_173538, intron 10 of 10) L1MB1|LINE|L1 493061 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 225.25-21 chr3 39302859 39303139 + 1.5 NA Intergenic AluJr|SINE|Alu -21264 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 176-9 chr10 97214923 97215116 + 1.5 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -29060 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 153.75-59 chr4 130851284 130851470 + 1.5 NA Intergenic Intergenic 475016 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 314-7 chr17 60969943 60970167 + 1.5 NA intron (NM_001330413, intron 14 of 25) L1MEf|LINE|L1 292204 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 187.5-75 chr7 46875878 46876056 + 1.5 NA Intergenic L1MB7|LINE|L1 -178845 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 285.25 chr1 44412611 44413056 + 1.5 NA intron (NM_001319956, intron 2 of 14) intron (NM_001319956, intron 2 of 14) 7578 NM_018150 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 164.5-87 chr7 28813147 28813419 + 1.5 NA intron (NM_001011666, intron 5 of 6) intron (NM_001011666, intron 5 of 6) 127150 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 125.75-70 chr7 144477711 144477959 + 1.5 NA intron (NM_001042482, intron 7 of 7) L1ME4a|LINE|L1 -67608 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 169.5-2 chr1 47188285 47188479 + 1.5 NA intron (NM_005764, intron 1 of 3) intron (NM_005764, intron 1 of 3) 1654 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 245.25-31 chr8 112439009 112439266 + 1.5 NA intron (NM_052900, intron 31 of 68) AluY|SINE|Alu -204356 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 251.75 chr1 82438329 82438571 + 1.5 NA Intergenic L2c|LINE|L2 -464733 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 123-37 chr3 97540121 97540292 + 1.5 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 100599 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 248.5-27 chr5 121583098 121583376 + 1.5 NA Intergenic Intergenic 260687 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 358.75-7 chr8 26156180 26156561 + 1.5 NA Intergenic LTR8B|LTR|ERV1 -110957 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 200-45 chr7 82927667 82927844 + 1.5 NA intron (NM_033026, intron 6 of 24) intron (NM_033026, intron 6 of 24) 235129 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 337.75-2 chr1 244392599 244392898 + 1.5 NA Intergenic AluJo|SINE|Alu 40113 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 261-31 chr3 104155566 104155795 + 1.5 NA Intergenic Intergenic -631564 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 255.75-24 chr8 80561099 80561406 + 1.5 NA Intergenic Charlie13b|DNA|hAT-Charlie 75026 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 389.25-4 chr20 31186934 31187293 + 1.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -70551 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 181.5-55 chr5 77951647 77951858 + 1.5 NA intron (NR_105012, intron 1 of 1) MIR|SINE|MIR -6495 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 193.75-28 chr20 1775171 1775368 + 1.5 NA intron (NR_037142, intron 2 of 3) MIRb|SINE|MIR 4477 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 301-4 chr1 245229469 245229834 + 1.5 NA intron (NR_151721, intron 1 of 4) intron (NR_151721, intron 1 of 4) 4866 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 281.75-12 chr3 64254933 64255394 + 1.5 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 13010 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 214-5 chr10 86098322 86098583 + 1.5 NA intron (NM_017551, intron 4 of 15) L1ME4c|LINE|L1 166336 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 185.5-51 chr3 124521997 124522282 + 1.5 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -62519 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 185.25-13 chr12 93764680 93764924 + 1.5 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -26979 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 172.5-63 chr5 43937469 43937596 + 1.5 NA Intergenic L1MA1|LINE|L1 -334302 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 140.75-12 chr12 2337368 2337473 + 1.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 67644 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 404.5 chr15 77199741 77200199 + 1.5 NA intron (NM_024776, intron 4 of 7) Tigger2|DNA|TcMar-Tigger 25434 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 162-56 chr7 4034029 4034391 + 1.5 NA intron (NM_152744, intron 17 of 44) L1MC4|LINE|L1 -95475 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 129.25-81 chr9 30835834 30835966 + 1.5 NA Intergenic L1MC1|LINE|L1 -427446 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 194.25-18 chr17 69226404 69226609 + 1.5 NA intron (NM_080282, intron 3 of 39) intron (NM_080282, intron 3 of 39) 8506 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 224.5-8 chr10 63801341 63801653 + 1.5 NA Intergenic Intergenic -279607 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 167-42 chr22 25545402 25545699 + 1.5 NA Intergenic Intergenic -19125 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 290.5-6 chr10 30867205 30867432 + 1.5 NA intron (NM_001143771, intron 5 of 7) Charlie1a|DNA|hAT-Charlie 132199 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 205.75-12 chr14 49409474 49409656 + 1.5 NA Intergenic Intergenic 176815 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 348-6 chr20 57677702 57678171 + 1.5 NA intron (NM_199171, intron 1 of 3) L1MD2|LINE|L1 12750 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 467.25-2 chr5 68241454 68241904 + 1.5 NA intron (NM_181523, intron 2 of 15) MIRb|SINE|MIR 25923 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 375.5 chr10 74597995 74598364 + 1.5 NA intron (NM_001369123, intron 8 of 9) intron (NM_001369123, intron 8 of 9) -68855 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 245-8 chr11 96695246 96695459 + 1.5 NA Intergenic MER106B|DNA|hAT-Charlie 186927 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 434 chr10 108259101 108259428 + 1.5 NA Intergenic Intergenic -189971 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 241.75-26 chr6 64381164 64381362 + 1.5 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 574427 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 180.25-56 chr5 170476564 170476929 + 1.5 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) -27274 NM_014592 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 230.5-27 chr2 45165376 45165564 + 1.5 NA Intergenic Intergenic 89471 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 220.5-18 chr17 66129371 66129600 + 1.5 NA intron (NM_001353129, intron 6 of 26) (ATT)n|Simple_repeat|Simple_repeat 62407 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 242.5-24 chr21 35339645 35339870 + 1.5 NA Intergenic Intergenic 241007 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 182.5-5 chr1 99899211 99899350 + 1.5 NA intron (NM_000028, intron 25 of 33) MIRc|SINE|MIR 48305 NM_000646 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 153.5-26 chr12 34553361 34553576 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 530972 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 144-7 chr10 41861636 41861833 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 506311 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 288.25-5 chr18 62761982 62762352 + 1.5 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 46626 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 201.5-57 chr7 46882989 46883232 + 1.5 NA Intergenic L1MA8|LINE|L1 -185988 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 167.25-23 chr14 20124273 20124465 + 1.5 NA Intergenic L1M2a|LINE|L1 6901 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 223-27 chr3 104520242 104520418 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity -846383 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 113.25-88 chr3 150393760 150393941 + 1.5 NA Intergenic Intergenic -14448 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 232.5-14 chr13 83484068 83484253 + 1.5 NA Intergenic Intergenic 398233 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 254.5-29 chr6 73031465 73031762 + 1.5 NA intron (NM_001160132, intron 2 of 13) intron (NM_001160132, intron 2 of 13) -63860 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 318-11 chr2 22278006 22278308 + 1.5 NA Intergenic Intergenic -258322 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 119.25-104 chr9 101444687 101444863 + 1.5 NA Intergenic LTR85a|LTR|Gypsy? -9001 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 170.75-31 chr18 4327430 4327552 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 62889 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 147.75-60 chr5 13176124 13176270 + 1.5 NA Intergenic Intergenic -143311 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 314.5-5 chr2 14400550 14400862 + 1.5 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 252 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 300.75-15 chr8 84451739 84452179 + 1.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 36475 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 260.75-6 chr17 59282077 59282364 + 1.5 NA Intergenic AluSx1|SINE|Alu -49435 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 161.75-26 chr2 186666220 186666496 + 1.5 NA intron (NM_001145000, intron 19 of 27) intron (NM_001145000, intron 19 of 27) -27702 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 198.5-58 chr9 92041683 92041985 + 1.5 NA intron (NM_001368273, intron 13 of 15) L1M5|LINE|L1 73579 NM_001368272 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 249.75-19 chr4 33595823 33596087 + 1.5 NA Intergenic HUERS-P3b-int|LTR|ERV1 443938 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 217-20 chr5 27145007 27145198 + 1.5 NA Intergenic Intergenic -106516 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 116-6 chr1 195841942 195842083 + 1.5 NA Intergenic L1ME3B|LINE|L1 246703 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 304.5-3 chr14 61683093 61683419 + 1.5 NA intron (NR_047116, intron 1 of 1) intron (NR_047116, intron 1 of 1) -12257 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 190.25-13 chr10 114510901 114511173 + 1.5 NA intron (NM_001352440, intron 6 of 20) intron (NM_001352440, intron 6 of 20) 15876 NM_001322895 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 160.5-32 chr2 5123453 5123629 + 1.5 NA Intergenic Intergenic -467319 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 312.75-6 chr20 24936201 24936499 + 1.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -12919 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 164.25-63 chr9 10954767 10954970 + 1.5 NA Intergenic Intergenic 341662 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 357.75-6 chr15 68552661 68553003 + 1.5 NA intron (NM_001324014, intron 2 of 12) intron (NM_001324014, intron 2 of 12) -26161 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 201.5-25 chr18 9522027 9522210 + 1.5 NA intron (NM_006788, intron 3 of 9) intron (NM_006788, intron 3 of 9) 46605 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 155.25-9 chr11 29801255 29801395 + 1.5 NA Intergenic MIR|SINE|MIR 181068 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 362.5-2 chr1 213491411 213491749 + 1.5 NA Intergenic Intergenic -433169 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 254.25-23 chr6 91292906 91293226 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -228594 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 233.25-21 chr20 55817739 55818015 + 1.5 NA Intergenic Intergenic 187642 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 227.5-59 chr8 137892256 137892437 + 1.5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 191199 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 174.5-26 chr14 58431108 58431269 + 1.5 NA intron (NM_001329944, intron 3 of 31) intron (NM_001329944, intron 3 of 31) 3469 NM_001364700 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 212.25-7 chr1 239585485 239585753 + 1.5 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -43454 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 331.5-5 chr2 31744771 31745147 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 59021 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 175-46 chr4 100327558 100327749 + 1.5 NA Intergenic Intergenic 67594 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 171.5-54 chr3 9985297 9985527 + 1.5 NA intron (NM_018447, intron 2 of 8) MER113|DNA|hAT-Charlie -1481 NR_103821 442075 Hs.690469 NM_001013730 EMC3-AS1 - EMC3 antisense RNA 1 ncRNA 113.5-130 chr9 73021686 73021805 + 1.5 NA Intergenic Intergenic -68692 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 186.75-18 chr15 67240068 67240280 + 1.5 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 14487 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 249-15 chr18 10494673 10494934 + 1.5 NA Intergenic LTR33|LTR|ERVL -31224 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 345.75-4 chr3 83097230 83097706 + 1.5 NA Intergenic Intergenic 1111326 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 121.5-98 chr5 109496429 109496525 + 1.5 NA Intergenic Intergenic -86503 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 199.5-59 chr8 76365778 76365966 + 1.5 NA Intergenic L1P1|LINE|L1 -40782 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 196-11 chr12 23140582 23140753 + 1.5 NA Intergenic Intergenic -34969 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 153-44 chr5 88485035 88485206 + 1.5 NA Intergenic Intergenic -46030 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 159-5 chr1 215926636 215926807 + 1.5 NA intron (NM_206933, intron 38 of 71) AluSp|SINE|Alu -145744 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 213.5-24 chr2 14025618 14025896 + 1.5 NA Intergenic L1MC3|LINE|L1 375201 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 218-35 chr4 163909664 163909935 + 1.5 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 287912 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 268.5-32 chr9 18636676 18636964 + 1.5 NA intron (NM_052866, intron 6 of 12) intron (NM_052866, intron 6 of 12) 63514 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 188.75-44 chr6 157998443 157998793 + 1.5 NA intron (NM_003898, intron 1 of 26) intron (NM_003898, intron 1 of 26) -2489 NR_046796 100874300 Hs.742238 NR_046796 ENSG00000233496 SYNJ2-IT1 - SYNJ2 intronic transcript 1 ncRNA 475-2 chr12 14959929 14960341 + 1.5 NA intron (NM_001321420, intron 1 of 6) intron (NM_001321420, intron 1 of 6) 1145 NM_001321421 397 Hs.504877 NM_001175 ENSG00000111348 ARHGDIB D4|GDIA2|GDID4|LYGDI|Ly-GDI|RAP1GN1|RhoGDI2 Rho GDP dissociation inhibitor beta protein-coding 291.25-20 chr5 135820216 135820575 + 1.5 NA intron (NM_001349335, intron 4 of 10) L1ME2|LINE|L1 -1363 NM_001365196 107986453 NM_001365196 LOC107986453 - uncharacterized LOC107986453 protein-coding 179.75-31 chr3 25835684 25835952 + 1.5 NA Intergenic MER33|DNA|hAT-Charlie 37877 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 267.5-18 chr3 116989902 116990123 + 1.5 NA Intergenic AluSx1|SINE|Alu 68581 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 180-37 chr2 134101905 134102063 + 1.5 NA Intergenic MER92-int|LTR|ERV1 -17951 NM_001371457 220.75-11 chr16 52903138 52903306 + 1.5 NA Intergenic L1ME4b|LINE|L1 149651 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 216.75-2 chr1 31663165 31663492 + 1.5 NA intron (NM_001856, intron 56 of 70) L2c|LINE|L2 -18452 NM_012392 553115 Hs.470417 NM_012392 ENSG00000162517 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 223.5-35 chr2 82486260 82486678 + 1.5 NA Intergenic Intergenic -370334 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 270.5-21 chr4 157452938 157453190 + 1.5 NA Intergenic Intergenic -119426 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 285.5-19 chr7 39844236 39844480 + 1.5 NA Intergenic Intergenic 105061 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 290.25-11 chr2 34758094 34758374 + 1.5 NA Intergenic Intergenic 80677 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 259.25-4 chr15 58413934 58414364 + 1.5 NA Intergenic L1M5|LINE|L1 -17842 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 180.75-40 chr20 40726583 40726867 + 1.5 NA Intergenic Intergenic -12102 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 216.75-25 chr21 29092662 29092875 + 1.5 NA intron (NM_001286634, intron 5 of 7) intron (NM_001286634, intron 5 of 7) 514 NM_001286619 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 172.5-37 chr2 196919184 196919380 + 1.5 NA intron (NM_001321099, intron 3 of 27) L2a|LINE|L2 7425 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 186.75-62 chr8 71572570 71572775 + 1.5 NA Intergenic L1ME1|LINE|L1 -24578 NM_001370335 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 184.75-3 chr1 70203841 70204134 + 1.5 NA intron (NM_017768, intron 1 of 14) L2b|LINE|L2 1592 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 195-5 chr10 34293991 34294263 + 1.5 NA intron (NM_001184790, intron 18 of 22) intron (NM_001184790, intron 18 of 22) 521169 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 220.75-15 chr2 81383044 81383193 + 1.5 NA Intergenic L1M5|LINE|L1 83828 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 184.5-3 chr1 49495966 49496117 + 1.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -23956 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 181.5-24 chr17 63231046 63231237 + 1.5 NA intron (NM_025185, intron 6 of 25) L1PA10|LINE|L1 209126 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 242.25-11 chr16 62402440 62402659 + 1.5 NA Intergenic L1ME1|LINE|L1 -366111 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 170.75-7 chr1 162163530 162163753 + 1.5 NA intron (NM_014697, intron 2 of 9) L2a|LINE|L2 6534 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 221.5-34 chr4 60425317 60425573 + 1.5 NA Intergenic Intergenic -497174 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 243.5-14 chr3 87248809 87249049 + 1.5 NA intron (NM_014043, intron 3 of 5) (TATA)n|Simple_repeat|Simple_repeat 21620 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 179.5-101 chr9 33946438 33946642 + 1.5 NA intron (NR_163243, intron 9 of 24) intron (NR_163243, intron 9 of 24) 6314 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 188.25-40 chr3 161488969 161489138 + 1.5 NA Intergenic LTR33B|LTR|ERVL -7755 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 163.25-64 chr6 140731885 140732152 + 1.5 NA Intergenic Intergenic 48204 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 275-9 chr3 96347461 96347750 + 1.5 NA Intergenic L1ME1|LINE|L1 -12359 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 317.25-2 chr1 206704041 206704390 + 1.5 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) 19310 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 230.5-48 chr6 157319816 157320256 + 1.5 NA intron (NM_018452, intron 2 of 3) intron (NM_018452, intron 2 of 3) 4223 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 414.75 chr14 29662416 29662722 + 1.5 NA intron (NM_001330069, intron 4 of 18) intron (NM_001330069, intron 4 of 18) 264527 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 266-16 chr4 115729409 115729687 + 1.5 NA Intergenic Intergenic -570177 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 249-19 chr2 99669729 99669996 + 1.5 NA intron (NM_001025108, intron 11 of 23) AluSq2|SINE|Alu -179845 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 210.25-36 chr5 44190694 44190845 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -197963 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 155.5-4 chr1 45748625 45748735 + 1.5 NA intron (NM_001145349, intron 1 of 9) AluJb|SINE|Alu 1973 NM_005897 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 379-5 chr21 26899473 26899826 + 1.5 NA Intergenic L1MEc|LINE|L1 -54240 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 262-17 chr2 146986699 146987017 + 1.5 NA Intergenic Intergenic 399801 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 253-21 chr6 92003052 92003297 + 1.5 NA Intergenic Intergenic -312746 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 263.75-4 chr18 1544870 1545148 + 1.5 NA Intergenic MIR|SINE|MIR -185380 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 227.75-21 chr6 110390854 110391154 + 1.5 NA TTS (NM_001368170) TTS (NM_001368170) 24571 NM_001368172 8528 Hs.591348 NM_003649 ENSG00000203797 DDO DASOX|DDO-1|DDO-2 D-aspartate oxidase protein-coding 233.5-15 chr13 48750733 48751049 + 1.5 NA Intergenic Intergenic 96962 NM_001308465 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 186-13 chr12 69156898 69157112 + 1.5 NA Intergenic LTR50|LTR|ERVL -82564 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 158.25-72 chr9 74638126 74638305 + 1.5 NA intron (NM_006914, intron 3 of 9) intron (NM_006914, intron 3 of 9) 22681 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 266.5-23 chr7 51166631 51166935 + 1.5 NA intron (NM_015198, intron 5 of 12) L1MA2|LINE|L1 150026 NM_001346443 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 154.25-58 chr6 132772629 132772860 + 1.5 NA intron (NM_052831, intron 10 of 13) intron (NM_052831, intron 10 of 13) -9285 NM_078488 8875 Hs.293130 NM_004665 ENSG00000112303 VNN2 FOAP-4|GPI-80 vanin 2 protein-coding 325-10 chr9 73152691 73153261 + 1.5 NA intron (NM_000700, intron 1 of 12) intron (NM_000700, intron 1 of 12) 1111 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 156.25-62 chr5 144811635 144811833 + 1.5 NA Intergenic Intergenic 606343 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 254 chr10 86342002 86342262 + 1.5 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 24663 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 189.5-30 chr2 135523433 135523659 + 1.5 NA intron (NM_032143, intron 1 of 20) intron (NM_032143, intron 1 of 20) 7039 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 309.5-16 chr6 82599049 82599346 + 1.5 NA Intergenic Intergenic 234953 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 296.5-18 chr6 54598478 54598752 + 1.5 NA Intergenic Intergenic -248156 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 314.25-11 chr6 164116583 164116841 + 1.5 NA Intergenic Intergenic -445228 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 153.25-46 chr5 164395399 164395589 + 1.5 NA Intergenic Intergenic 71908 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 138.75-50 chr4 32704174 32704329 + 1.5 NA Intergenic Intergenic 353213 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 176-46 chr9 114473313 114473508 + 1.5 NA intron (NM_001083885, intron 2 of 11) intron (NM_001083885, intron 2 of 11) 29805 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 254.5-26 chr5 149211206 149211452 + 1.5 NA intron (NM_001370418, intron 6 of 18) intron (NM_001370418, intron 6 of 18) -60509 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 351-8 chr5 132603274 132603765 + 1.5 NA intron (NM_005732, intron 14 of 24) intron (NM_005732, intron 14 of 24) 38271 NR_132124 101927761 Hs.598812 NR_132124 ENSG00000223442 TH2LCRR TH2-LCR T helper type 2 locus control region associated RNA ncRNA 230.25-17 chr22 30935062 30935368 + 1.5 NA intron (NM_001303257, intron 18 of 25) intron (NM_001303257, intron 18 of 25) 12907 NR_026920 150291 Hs.592202 NM_153044 ENSG00000235989 MORC2-AS1 C22orf27|NCRNA00325 MORC2 antisense RNA 1 ncRNA 169-16 chr14 40845542 40845745 + 1.5 NA Intergenic MER45B|DNA|hAT-Tip100 -109068 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 361.25-2 chr18 73678599 73679170 + 1.5 NA Intergenic Intergenic 353943 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 356.25-5 chr12 2480848 2481250 + 1.5 NA intron (NM_199460, intron 5 of 49).2 intron (NM_199460, intron 5 of 49).2 191171 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 248.5-7 chr12 91526366 91526605 + 1.5 NA Intergenic AluSz6|SINE|Alu -343668 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 135.75-111 chr9 29457713 29457926 + 1.5 NA Intergenic Intergenic -244218 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 220.75-14 chr19 10337884 10338241 + 1.5 NA intron (NM_002162, intron 2 of 6) AluSg|SINE|Alu 1562 NM_001320606 3385 Hs.654563 NM_002162 ENSG00000076662 ICAM3 CD50|CDW50|ICAM-R intercellular adhesion molecule 3 protein-coding 147.5-27 chr14 75935509 75935660 + 1.5 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 46411 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 220.25-29 chr3 123261187 123261436 + 1.5 NA intron (NM_012430, intron 6 of 6) MIRc|SINE|MIR 59368 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 326.25-12 chr3 56623798 56624126 + 1.5 NA intron (NM_001365638, intron 22 of 22) intron (NM_001365638, intron 22 of 22) 40084 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 173.25-28 chr2 55318197 55318356 + 1.5 NA intron (NM_001254943, intron 19 of 33) intron (NM_001254943, intron 19 of 33) 35957 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 175.5-30 chr16 58549386 58549597 + 1.5 NA promoter-TSS (NR_002978) promoter-TSS (NR_002978) -858 NR_002978 677827 Hs.688592 NR_002978 ENSG00000207493 SNORA46 ACA46 small nucleolar RNA, H/ACA box 46 snoRNA 283.5-20 chr6 169492486 169492862 + 1.5 NA intron (NR_146875, intron 19 of 20) L1MEi|LINE|L1 209355 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 160.25-4 chr10 35066636 35066889 + 1.5 NA intron (NM_003591, intron 2 of 20) intron (NM_003591, intron 2 of 20) 7521 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 143.25-56 chr4 85105595 85105730 + 1.5 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat 138178 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 239.5-12 chr17 71166325 71166555 + 1.5 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 35739 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 236-26 chr3 147010823 147011118 + 1.5 NA Intergenic Intergenic 89047 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 483-2 chr6 92007110 92007719 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -316986 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 207.75-41 chr8 106876193 106876387 + 1.5 NA Intergenic L1MEd|LINE|L1 -106046 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 201.5-36 chr21 42212977 42213177 + 1.5 NA intron (NM_207628, intron 3 of 16) MLT1A0-int|LTR|ERVL-MaLR -3000 NM_207629 9619 Hs.124649 NM_004915 ENSG00000160179 ABCG1 ABC8|WHITE1 ATP binding cassette subfamily G member 1 protein-coding 234.75-38 chr5 58061570 58061815 + 1.5 NA Intergenic Intergenic 60649 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 301-11 chr14 84760632 84760973 + 1.5 NA Intergenic Intergenic -511130 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 212-17 chr17 51412201 51412365 + 1.5 NA Intergenic Intergenic -23144 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 255-3 chr1 100524604 100524878 + 1.5 NA Intergenic Intergenic -13398 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 249.5-8 chr17 66079196 66079470 + 1.5 NA intron (NM_001302891, intron 6 of 24) L1ME3B|LINE|L1 112559 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 198-34 chr4 67157058 67157287 + 1.5 NA Intergenic Intergenic 264828 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 187.5-66 chr6 34600717 34601061 + 1.5 NA intron (NM_022758, intron 3 of 3) MIRb|SINE|MIR -44556 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 444.25 chr16 72448091 72448791 + 1.5 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 216529 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 183-13 chr11 66849272 66849414 + 1.5 NA exon (NM_000920, exon 21 of 22) exon (NM_000920, exon 21 of 22) 5902 NM_001032279 9986 Hs.654972 NM_005133 ENSG00000173653 RCE1 FACE2|RCE1A|RCE1B Ras converting CAAX endopeptidase 1 protein-coding 238.5-22 chr3 33336521 33336739 + 1.5 NA intron (NR_146129, intron 4 of 15) AluSc|SINE|Alu 59188 NM_001349322 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 197.75-21 chr2 116627325 116627561 + 1.5 NA Intergenic AluJo|SINE|Alu -1187248 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 277.5-6 chr16 66082662 66083035 + 1.5 NA Intergenic Intergenic -283843 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 187.75-41 chr4 108303601 108303779 + 1.5 NA Intergenic MIR3|SINE|MIR 131570 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 227.5-12 chr12 14027209 14027380 + 1.5 NA Intergenic Intergenic -46938 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 191-15 chr15 95409358 95409520 + 1.5 NA Intergenic Intergenic -23654 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 284.75-13 chr9 81073684 81073998 + 1.5 NA Intergenic Intergenic 615694 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 307.25-7 chr3 175701684 175701935 + 1.5 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 74524 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 145.5-40 chr18 32361339 32361442 + 1.5 NA intron (NM_001242409, intron 2 of 5) Tigger19a|DNA|TcMar-Tigger 109492 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 149.5-54 chr2 72121990 72122187 + 1.5 NA Intergenic L1MD2|LINE|L1 25774 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 380.5-9 chr8 84560181 84560526 + 1.5 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 144869 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 124.5-105 chr8 28936541 28936679 + 1.5 NA intron (NM_001324393, intron 2 of 11) intron (NM_001324393, intron 2 of 11) 45296 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 161.25-22 chr14 64059692 64059891 + 1.5 NA intron (NM_015180, intron 49 of 114) L1M1|LINE|L1 35334 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 273-30 chr9 111441642 111441880 + 1.5 NA intron (NM_001363756, intron 4 of 48) intron (NM_001363756, intron 4 of 48) 41801 NM_001364930 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 198.75-41 chr5 132143236 132143453 + 1.5 NA Intergenic L1MC4|LINE|L1 -41532 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 239.25-11 chr14 97406565 97406858 + 1.5 NA Intergenic Intergenic -52105 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 165.75-70 chr8 80127333 80127466 + 1.5 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 43722 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 252.25-20 chr6 91257478 91257861 + 1.5 NA Intergenic MER39|LTR|ERV1 -263991 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 125-10 chr1 211659164 211659312 + 1.5 NA intron (NM_001204182, intron 7 of 7) Ricksha_0|DNA|MULE-MuDR 16383 NM_002497 4751 Hs.153704 NM_002497 ENSG00000117650 NEK2 HsPK21|NEK2A|NLK1|PPP1R111|RP67 NIMA related kinase 2 protein-coding 156-67 chr8 98111964 98112173 + 1.5 NA intron (NM_005836, intron 1 of 5) L1ME4b|LINE|L1 5103 NM_005836 10247 Hs.18426 NM_005836 ENSG00000132541 RIDA HRSP12|P14.5|PSP|UK114|hp14.5 reactive intermediate imine deaminase A homolog protein-coding 338-2 chr14 62824026 62824481 + 1.5 NA intron (NM_139318, intron 8 of 10) L1MEg|LINE|L1 221205 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 173.5-24 chr14 68159130 68159268 + 1.5 NA intron (NM_133509, intron 7 of 10) L1MC5|LINE|L1 335607 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 344-2 chr10 56944433 56944758 + 1.5 NA Intergenic MIR|SINE|MIR 359964 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 234-10 chr10 121256596 121256935 + 1.5 NA Intergenic L1ME3|LINE|L1 274549 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 215.25-25 chr4 96493071 96493243 + 1.5 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 182454 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 205-37 chr6 133815931 133816178 + 1.5 NA intron (NR_109982, intron 2 of 8) intron (NR_109982, intron 2 of 8) -5093 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 152.5-76 chr3 178796074 178796183 + 1.5 NA intron (NM_005832, intron 2 of 5) intron (NM_005832, intron 2 of 5) 64277 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 184-3 chr1 100392486 100392662 + 1.5 NA intron (NM_001319212, intron 4 of 13) intron (NM_001319212, intron 4 of 13) 40068 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 321.75-12 chr4 14313141 14313467 + 1.5 NA Intergenic Intergenic 201336 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 282.5-14 chr3 182658403 182658681 + 1.5 NA Intergenic Charlie19a|DNA|hAT-Charlie -134962 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 268.5-22 chr4 56513176 56513387 + 1.5 NA intron (NM_206919, intron 2 of 3) intron (NM_206919, intron 2 of 3) 7528 NM_001363794 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 277.5-16 chr5 51935125 51935411 + 1.5 NA Intergenic Intergenic -72763 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 253.25-23 chr4 139317456 139317772 + 1.5 NA intron (NM_057175, intron 1 of 19) AluSg|SINE|Alu -15063 NM_001184990 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 206-33 chr6 53595266 53595436 + 1.5 NA Intergenic MIR3|SINE|MIR -22076 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 210.25-33 chr4 173317143 173317480 + 1.5 NA intron (NM_017423, intron 9 of 11) intron (NM_017423, intron 9 of 11) 16458 NM_001130689 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 294-14 chr3 168380205 168380451 + 1.5 NA intron (NR_021485, intron 3 of 15) L1MA2|LINE|L1 130806 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 327-7 chr14 71612303 71612632 + 1.5 NA intron (NM_001354286, intron 6 of 24) intron (NM_001354286, intron 6 of 24) 26169 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 247-25 chr6 36950192 36950410 + 1.5 NA intron (NM_001199159, intron 1 of 7) L1MB3|LINE|L1 2038 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 186.5-14 chr11 111278281 111278419 + 1.5 NA intron (NM_198498, intron 2 of 4) intron (NM_198498, intron 2 of 4) -20196 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 225-48 chr9 113125606 113125776 + 1.5 NA Intergenic MER57E2|LTR|ERV1 12795 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 211-18 chr2 156973908 156974122 + 1.5 NA Intergenic HAL1|LINE|L1 -283690 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 304.75-2 chr15 37579236 37579454 + 1.5 NA Intergenic Intergenic -355262 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 170.25-3 chr1 173054900 173055110 + 1.5 NA Intergenic Intergenic -4042 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 299.5-15 chr8 125831610 125831831 + 1.5 NA Intergenic Intergenic 119477 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 239.25-6 chr11 35212057 35212311 + 1.5 NA intron (NM_001001389, intron 13 of 16) intron (NM_001001389, intron 13 of 16) 49234 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 309.5-15 chr5 54219081 54219515 + 1.5 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 91275 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 185.5-7 chr1 209885112 209885303 + 1.5 NA Intergenic MIR|SINE|MIR -52967 NM_001256006 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 133-43 chr2 215489845 215489978 + 1.5 NA Intergenic LTR33A|LTR|ERVL 36204 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 272-15 chr2 4657328 4657670 + 1.5 NA Intergenic L1ME3B|LINE|L1 -1277 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 230.25-6 chr15 58850097 58850428 + 1.5 NA intron (NM_001040450, intron 7 of 8) L1ME4a|LINE|L1 78960 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 185.75-51 chr5 84332844 84333061 + 1.5 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 51915 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 272-24 chr7 83905806 83906057 + 1.5 NA Intergenic Intergenic -256792 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 268-25 chr5 131623930 131624215 + 1.5 NA intron (NM_016340, intron 1 of 27) L2c|LINE|L2 11157 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 323-12 chr3 62529823 62530151 + 1.5 NA intron (NM_003716, intron 13 of 29) intron (NM_003716, intron 13 of 29) -156437 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 144.75-59 chr3 150395285 150395473 + 1.5 NA Intergenic Intergenic -12919 NM_001303264 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 162.75-20 chr14 66683330 66683516 + 1.5 NA intron (NM_001024218, intron 2 of 21) (AT)n|Simple_repeat|Simple_repeat 176016 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 346-8 chr17 72004500 72004963 + 1.5 NA Intergenic Intergenic 21248 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 165.5-38 chr17 70162239 70162379 + 1.5 NA Intergenic MIRb|SINE|MIR 7093 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 213-44 chr7 111989255 111989450 + 1.5 NA intron (NM_001363540, intron 5 of 52) intron (NM_001363540, intron 5 of 52) 180847 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 265.75-15 chr8 112006478 112006790 + 1.5 NA Intergenic L1PA15|LINE|L1 629995 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 237-32 chr5 169625768 169626031 + 1.5 NA Intergenic AluJb|SINE|Alu -11376 NM_004946 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 247.5-39 chr8 65187812 65187999 + 1.5 NA Intergenic Intergenic -7565 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 367.5 chr1 49675813 49676169 + 1.5 NA intron (NR_136623, intron 2 of 12) MIRc|SINE|MIR -203906 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 199.5-17 chr14 69986948 69987135 + 1.5 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 8908 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 273.5-8 chr14 85093093 85093297 + 1.5 NA Intergenic L1MC5|LINE|L1 -178737 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 255 chr1 48499658 48499992 + 1.5 NA Intergenic Intergenic -27617 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 272.5-2 chr10 35047916 35048189 + 1.5 NA intron (NM_001324375, intron 4 of 18) intron (NM_001324375, intron 4 of 18) 26231 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 206-10 chr12 55762739 55763023 + 1.5 NA intron (NM_033082, intron 9 of 10) intron (NM_033082, intron 9 of 10) 19759 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 160.5-55 chr4 38274121 38274376 + 1.5 NA Intergenic Intergenic -92666 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 399.5 chr16 64188164 64188579 + 1.5 NA Intergenic Intergenic 933692 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 246-24 chr6 68254085 68254335 + 1.5 NA intron (NR_125854, intron 3 of 3) L1PB2|LINE|L1 75689 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 236.25-26 chr3 184250674 184250917 + 1.5 NA intron (NM_014693, intron 1 of 18) intron (NM_014693, intron 1 of 18) 1123 NM_014693 110599583 Hs.146161 NM_014693 ENSG00000284917 EEF1AKMT4-ECE2 ECE-2|ECE2 EEF1AKMT4-ECE2 readthrough protein-coding 156-9 chr1 237787849 237788028 + 1.5 NA intron (NM_001035, intron 91 of 104) intron (NM_001035, intron 91 of 104) -74237 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 174.75-26 chr2 5463738 5463986 + 1.5 NA Intergenic Intergenic 227256 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 193.5-50 chr3 186160548 186160770 + 1.5 NA intron (NM_001346, intron 24 of 24) intron (NM_001346, intron 24 of 24) -51570 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 160.5-46 chr22_KI270736v1_random 166459 166646 + 1.5 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 319.5-3 chr11 15250040 15250379 + 1.5 NA Intergenic MIRc|SINE|MIR 101107 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 294.5-5 chr11 108849453 108849720 + 1.5 NA intron (NM_004398, intron 15 of 17) intron (NM_004398, intron 15 of 17) 184517 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 252.5-36 chr9 32833068 32833312 + 1.5 NA Intergenic Intergenic 49650 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 205.25-30 chr5 44844289 44844464 + 1.5 NA Intergenic Intergenic 35429 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 252.75-3 chr10 85439082 85439375 + 1.5 NA intron (NR_120670, intron 1 of 2) intron (NR_120670, intron 1 of 2) 6365 NR_120670 101929662 Hs.639355 NR_120670 ENSG00000224504 LOC101929662 - uncharacterized LOC101929662 ncRNA 225.75-27 chr8 88664085 88664348 + 1.5 NA Intergenic L1MA9|LINE|L1 -336733 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 207-27 chr2 53584941 53585186 + 1.5 NA Intergenic Intergenic -182720 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 256.5-12 chr13 26905540 26905860 + 1.5 NA Intergenic Intergenic -144914 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 305.5-9 chr2 78786001 78786281 + 1.5 NA Intergenic L1ME4a|LINE|L1 -239561 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 186.5-5 chr1 195900646 195900863 + 1.5 NA Intergenic MIR|SINE|MIR 187961 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 267-18 chr3 138111348 138111650 + 1.5 NA intron (NM_173543, intron 1 of 15) intron (NM_173543, intron 1 of 15) 1981 NM_001170538 199221 Hs.351403 NM_173543 ENSG00000158163 DZIP1L DZIP2|PKD5 DAZ interacting zinc finger protein 1 like protein-coding 227-37 chr8 117323292 117323521 + 1.5 NA Intergenic L1MEc|LINE|L1 188411 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 240.5-24 chr19 6236900 6237225 + 1.5 NA intron (NM_005934, intron 3 of 11) intron (NM_005934, intron 3 of 11) 42913 NM_005934 4298 Hs.10095 NM_005934 ENSG00000130382 MLLT1 ENL|LTG19|YEATS1 MLLT1 super elongation complex subunit protein-coding 158.5-55 chr2 52343240 52343424 + 1.5 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -27316 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 200-39 chr5 142596602 142596894 + 1.5 NA intron (NM_001354963, intron 3 of 3) AluJo|SINE|Alu 24586 NM_001257212 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 125-49 chr2 39896530 39896640 + 1.5 NA Intergenic Intergenic -21049 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 333-6 chr14 49504286 49504821 + 1.5 NA Intergenic AluJb|SINE|Alu 81827 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 212.75-36 chr8 121528414 121528689 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -110795 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 238.5-20 chr22 33720875 33721106 + 1.5 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) -3996 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 146-54 chr7 8376644 8376793 + 1.5 NA Intergenic Intergenic -56891 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 140.25-27 chr17 38932903 38933024 + 1.5 NA Intergenic Intergenic 7795 NR_038847 100505576 Hs.634043 NR_038847 ENSG00000263874 LINC00672 - long intergenic non-protein coding RNA 672 ncRNA 262-3 chr1 95889202 95889447 + 1.5 NA Intergenic Intergenic -102744 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 242.75-23 chr8 70959770 70959931 + 1.5 NA Intergenic L1ME4b|LINE|L1 290511 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 302.25-2 chr12 15344613 15344888 + 1.5 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 22242 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 383-3 chr19 48312885 48313328 + 1.5 NA intron (NM_144577, intron 3 of 13) intron (NM_144577, intron 3 of 13) 6393 NM_144577 93233 Hs.112645 NM_144577 ENSG00000105479 CCDC114 CILD20 coiled-coil domain containing 114 protein-coding 131.25-24 chr11 108602656 108602862 + 1.5 NA Intergenic Intergenic -8991 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 210.5-7 chr10 106474669 106474918 + 1.5 NA Intergenic L2c|LINE|L2 334628 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 222.5-47 chr7 114061224 114061488 + 1.5 NA Intergenic Intergenic -24971 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 187-44 chr4 77494958 77495152 + 1.5 NA Intergenic Intergenic -16698 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 227-38 chr9 92230585 92230880 + 1.5 NA intron (NR_073446, intron 29 of 32) L1MD2|LINE|L1 -39576 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 200.5 chr1 82583869 82584004 + 1.5 NA Intergenic L1PA4|LINE|L1 -319247 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 178-46 chr5 177221154 177221435 + 1.5 NA intron (NM_172349, intron 6 of 23) L1MB1|LINE|L1 82425 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 206-37 chr8 118008808 118009006 + 1.5 NA intron (NM_000127, intron 1 of 10) MIR|SINE|MIR -87994 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 175-26 chr2 147968481 147968704 + 1.5 NA intron (NM_001190881, intron 1 of 10) L1MA5A|LINE|L1 52145 NM_181741 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 207.5-5 chr10 34924830 34925056 + 1.5 NA Intergenic L1M3|LINE|L1 109175 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 174-39 chr4 114397854 114397994 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -200478 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 183-60 chr6 9915531 9915762 + 1.5 NA Intergenic Intergenic -488856 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 228.5-40 chr9 92689401 92689725 + 1.5 NA Intergenic AluY|SINE|Alu -19432 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 129-18 chr13 37042554 37042691 + 1.5 NA intron (NM_001014286, intron 7 of 25) L2a|LINE|L2 16865 NM_001278482 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 159-45 chr3 97270629 97270805 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -168890 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 191.5-57 chr5 150920369 150920512 + 1.5 NA Intergenic Intergenic -15457 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 199.5-29 chr2 180966121 180966363 + 1.5 NA Intergenic Charlie18a|DNA|hAT-Charlie -14143 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 280-21 chr5 57978581 57978815 + 1.5 NA Intergenic MIRb|SINE|MIR -79536 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 240.5-15 chr12 43727959 43728213 + 1.5 NA 3' UTR (NM_001098614, exon 9 of 9) 3' UTR (NM_001098614, exon 9 of 9) 30704 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 144-9 chr10 59792021 59792219 + 1.5 NA 3' UTR (NM_005436, exon 9 of 9) 3' UTR (NM_005436, exon 9 of 9) -38665 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 167.5-82 chr7 93003826 93004009 + 1.5 NA Intergenic Intergenic 114062 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 227.5-51 chr7 91806263 91806464 + 1.5 NA Intergenic Intergenic 74339 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 232.5-44 chr6 40813182 40813424 + 1.5 NA Intergenic Intergenic 209977 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 222.5-21 chr17 50892883 50893141 + 1.5 NA Intergenic MIRc|SINE|MIR -25034 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 502.75 chr6 87170463 87170995 + 1.5 NA intron (NM_015021, intron 1 of 7) intron (NM_015021, intron 1 of 7) 15164 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 266.5-16 chr3 117595735 117596028 + 1.5 NA Intergenic Intergenic 95044 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 415.75-4 chr4 30844022 30844544 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 123914 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 147-29 chr15 91113109 91113260 + 1.5 NA intron (NM_001323039, intron 1 of 12) MLT1J1|LTR|ERVL-MaLR 11388 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 288.5-11 chr2 234179454 234179731 + 1.5 NA Intergenic Intergenic 128890 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 189-7 chr1 209415560 209415776 + 1.5 NA Intergenic Charlie15a|DNA|hAT-Charlie -13152 NR_145436 642587 Hs.510543 NR_145433 ENSG00000230937 MIR205HG LINC00510|NPC-A-5 MIR205 host gene ncRNA 246.5-9 chr2 32172505 32172754 + 1.5 NA intron (NM_001330478, intron 2 of 9) L2|LINE|L2 6765 NM_001193513 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 309.75-11 chr7 4473075 4473315 + 1.5 NA Intergenic HERVL40-int|LTR|ERVL -209100 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 236.75-15 chr2 192338862 192339114 + 1.5 NA Intergenic Intergenic -144055 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 191.25-39 chr22 19258754 19259009 + 1.5 NA intron (NM_007098, intron 2 of 32) L1M3|LINE|L1 32838 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 181.5-32 chr19 35428325 35428492 + 1.5 NA Intergenic AluSx1|SINE|Alu -19849 NM_005306 2867 Hs.248056 NM_005306 ENSG00000126262 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 259.75-11 chr22 27905274 27905553 + 1.5 NA intron (NM_001284278, intron 3 of 11) AluSq2|SINE|Alu 13801 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 220-14 chr16 49481745 49481964 + 1.5 NA Intergenic L1MDa|LINE|L1 36731 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 245.5-10 chr2 16454039 16454325 + 1.5 NA Intergenic L2|LINE|L2 211652 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 254-6 chr15 61648883 61649155 + 1.5 NA Intergenic Intergenic -80899 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 202-27 chr7 37927710 37927934 + 1.5 NA intron (NM_001242948, intron 1 of 2) intron (NM_001242948, intron 1 of 2) 6503 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 409.5-4 chr20 36299381 36299883 + 1.5 NA Intergenic Intergenic -6707 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 339-2 chr12 74260979 74261280 + 1.5 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 31502 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 211-14 chr2 24462913 24463181 + 1.5 NA Intergenic L2a|LINE|L2 -28207 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 202.75-10 chr16 56243248 56243475 + 1.5 NA intron (NM_138736, intron 2 of 7) L1M4|LINE|L1 -2159 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 249-30 chr3 195208005 195208204 + 1.5 NA intron (NM_152531, intron 2 of 3) MLT1F2|LTR|ERVL-MaLR 39816 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 171-9 chr10 52857417 52857570 + 1.5 NA Intergenic Intergenic -85793 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 236.5-35 chr4 44783216 44783420 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -56684 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 158.5-62 chr20 62019224 62019421 + 1.5 NA intron (NM_003185, intron 1 of 14) intron (NM_003185, intron 1 of 14) -45480 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 179-12 chr10 105491908 105492068 + 1.5 NA Intergenic Intergenic 328345 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 182-37 chr4 108652025 108652246 + 1.5 NA intron (NM_001267817, intron 1 of 2) intron (NM_001267817, intron 1 of 2) 1536 NM_001267818 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 152.25-40 chr3 109267284 109267522 + 1.5 NA Intergenic L1M4a1|LINE|L1 49114 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 119-36 chr2 53511419 53511513 + 1.5 NA Intergenic Intergenic -256317 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 191.5-42 chr3 120187111 120187276 + 1.5 NA intron (NM_001168271, intron 4 of 8) intron (NM_001168271, intron 4 of 8) 57102 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 417.5-4 chr3 18061506 18061988 + 1.5 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 99195 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 139-71 chr8 137762693 137762817 + 1.5 NA Intergenic L2b|LINE|L2 320790 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 184-56 chrX 128712016 128712214 + 1.5 NA Intergenic Intergenic -659712 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 136-33 chr2 53575505 53575646 + 1.5 NA Intergenic Intergenic -192208 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 199.5-12 chr12 74543886 74544020 + 1.5 NA 3' UTR (NM_001136262, exon 1 of 1) 3' UTR (NM_001136262, exon 1 of 1) 6118 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 148.75-26 chr18 7490099 7490276 + 1.5 NA Intergenic L2a|LINE|L2 -29181 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 158.25-41 chr4 66816845 66817053 + 1.5 NA Intergenic L1ME3E|LINE|L1 540125 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 128.25-74 chr6 157104429 157104659 + 1.5 NA intron (NM_020732, intron 6 of 19) L1MC5a|LINE|L1 68117 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 459.75 chr2 63831028 63831586 + 1.5 NA Intergenic L2a|LINE|L2 -9657 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 150-8 chr1 147260847 147261076 + 1.5 NA intron (NM_001348461, intron 5 of 20) intron (NM_001348461, intron 5 of 20) 17819 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 381.5-2 chr22 43697173 43697469 + 1.5 NA intron (NM_198856, intron 8 of 29) L1ME4a|LINE|L1 114984 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 132.75-45 chr16 5975085 5975187 + 1.5 NA Intergenic Intergenic -43888 NM_001364800 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 258.5-19 chr8 66379434 66379627 + 1.5 NA Intergenic Intergenic 49447 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 158-72 chrX 49153527 49153692 + 1.5 NA Intergenic L1MB7|LINE|L1 -9234 NM_001099682 79917 Hs.193170 NM_024859 ENSG00000269313 MAGIX JM10|PDZX MAGI family member, X-linked protein-coding 114.25-6 chr1 151495437 151495579 + 1.5 NA Intergenic Intergenic -15879 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 423.5-5 chr5 26688481 26689007 + 1.5 NA Intergenic Intergenic 349842 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 154.5-70 chr7 123200091 123200222 + 1.5 NA promoter-TSS (NM_001324400) promoter-TSS (NM_001324400) -185 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 277-14 chr18 35665541 35665967 + 1.5 NA intron (NM_020474, intron 2 of 10) HAL1|LINE|L1 11185 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 223.5-52 chr3 158465399 158465607 + 1.5 NA intron (NM_001271838, intron 7 of 9) (AGAAGGT)n|Simple_repeat|Simple_repeat -61205 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 188.5-39 chr4 98758296 98758454 + 1.5 NA Intergenic MIRb|SINE|MIR 99473 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 191.5-7 chr10 41881814 41882028 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 486124 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 375-8 chr8 132238574 132239028 + 1.5 NA intron (NM_004519, intron 1 of 14) MLT1O|LTR|ERVL-MaLR -133536 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 216.25-36 chr8 24772950 24773107 + 1.5 NA Intergenic Intergenic -140733 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 185-15 chr15 80288144 80288321 + 1.5 NA intron (NR_033833, intron 1 of 2) MLT1H2|LTR|ERVL-MaLR -36019 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 318-4 chr10 106655908 106656215 + 1.5 NA intron (NM_001206569, intron 17 of 25) intron (NM_001206569, intron 17 of 25) 508645 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 209.25-28 chr4 31454111 31454314 + 1.5 NA Intergenic Intergenic -52332 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 181.5 chr1 69651188 69651398 + 1.5 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 81952 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 142.5-94 chr8 116796456 116796581 + 1.5 NA Intergenic L1MEc|LINE|L1 29994 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 256.5-25 chr20 3637810 3638164 + 1.5 NA intron (NM_139321, intron 26 of 28) X7A_LINE|LINE|CR1 25412 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 196.75-38 chr6 10450323 10450500 + 1.5 NA intron (NR_132993, intron 1 of 3) L1M5|LINE|L1 10694 NR_049872 100846998 NR_049872 ENSG00000263705 MIR5689 - microRNA 5689 ncRNA 206.25-24 chr4 30778736 30778996 + 1.5 NA intron (NM_032457, intron 1 of 2) MIR3|SINE|MIR 58497 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 181.5-77 chr8 131628763 131628901 + 1.5 NA Intergenic L1MA9|LINE|L1 -275261 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 253.5-22 chr2 24162935 24163113 + 1.5 NA intron (NM_001145710, intron 8 of 10) L1MB8|LINE|L1 -12029 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 233.5-21 chr16 59357614 59357810 + 1.5 NA Intergenic Intergenic 397479 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 194.5-77 chr8 123603936 123604100 + 1.5 NA Intergenic L1PA14|LINE|L1 49783 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 300-9 chr14 67368994 67369324 + 1.5 NA intron (NM_004094, intron 2 of 7) L1MEb|LINE|L1 8831 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 187.75-26 chr21 20242685 20242855 + 1.5 NA Intergenic MER57F|LTR|ERV1 15915 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 393.75 chr10 50444742 50445057 + 1.5 NA intron (NM_147156, intron 5 of 10) L1ME2|LINE|L1 179057 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 434-5 chr8 135671036 135671417 + 1.5 NA Intergenic Intergenic 213770 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 262.5-25 chr20 63094565 63094920 + 1.5 NA TTS (NR_003245) TTS (NR_003245) -6550 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 240.25-4 chr12 96713499 96713782 + 1.5 NA intron (NM_001306084, intron 48 of 67) L2a|LINE|L2 -193617 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 361.5-4 chr2 40568 40984 + 1.5 NA 3' UTR (NM_001077710, exon 2 of 2) 3' UTR (NM_001077710, exon 2 of 2) 5729 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 255.5-24 chr4 92666204 92666542 + 1.5 NA intron (NM_001286838, intron 2 of 14) L1M4c|LINE|L1 361974 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 117-20 chr13 60397726 60397839 + 1.5 NA intron (NM_001146070, intron 1 of 13) CpG 562 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 211.25-40 chr9 28680247 28680725 + 1.5 NA intron (NM_001354574, intron 2 of 5) L1MA8|LINE|L1 38819 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 363-3 chr11 90395261 90395565 + 1.5 NA intron (NR_104190, intron 1 of 6) L3b|LINE|CR1 144181 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 144.5-17 chr11 20390649 20390786 + 1.5 NA intron (NM_001145166, intron 2 of 13) AluY|SINE|Alu 3001 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 131.75-74 chr7 4332049 4332254 + 1.5 NA Intergenic Intergenic -197314 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 216.25-23 chr3 18527161 18527370 + 1.5 NA non-coding (NR_125803, exon 6 of 7) non-coding (NR_125803, exon 6 of 7) -81673 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 236-29 chr5 8953776 8953985 + 1.5 NA Intergenic L1MEi|LINE|L1 100015 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 302.5-3 chr14 66781874 66782133 + 1.5 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 274596 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 183.25-43 chr5 94310390 94310527 + 1.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -198759 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 196.25-55 chr5 103933887 103934160 + 1.5 NA Intergenic Intergenic -371234 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 257-24 chrX 78846872 78847231 + 1.5 NA Intergenic L1MA10|LINE|L1 54198 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 264.75-17 chr3 106504273 106504550 + 1.5 NA Intergenic Intergenic -635010 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 186-22 chr18 72077454 72077611 + 1.5 NA Intergenic Intergenic -295306 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 177.75-23 chr2 51640454 51640649 + 1.5 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 607950 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 360.5-6 chr3 35143992 35144286 + 1.5 NA intron (NR_110817, intron 2 of 3) L1MEg2|LINE|L1 249884 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 153.5-58 chr22 46688331 46688539 + 1.5 NA intron (NM_022766, intron 12 of 12) intron (NM_022766, intron 12 of 12) 49817 NM_022766 64781 Hs.200668 NM_022766 ENSG00000100422 CERK LK4|dA59H18.2|dA59H18.3|hCERK ceramide kinase protein-coding 248.25-9 chr18 5073026 5073215 + 1.5 NA Intergenic MIR|SINE|MIR -8062 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 180-50 chr4 107438557 107438698 + 1.5 NA Intergenic Charlie3|DNA|hAT-Charlie 281607 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 191-6 chr10 65664385 65664555 + 1.5 NA intron (NR_120647, intron 3 of 5) LOR1-int|LTR|ERV1 93045 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 423-2 chr3 8596871 8597215 + 1.5 NA Intergenic Intergenic 25261 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 237.75-12 chr12 41504587 41504788 + 1.5 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 66948 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 245.75-20 chrX 136314755 136314918 + 1.5 NA intron (NM_153834, intron 4 of 25) L2a|LINE|L2 13873 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 178.25-35 chr3 68264927 68265053 + 1.5 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -235647 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 229.5-47 chr7 96399268 96399596 + 1.5 NA Intergenic FLAM_C|SINE|Alu -77285 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 273-4 chr10 90773626 90773926 + 1.5 NA intron (NM_019860, intron 1 of 2) L1MA2|LINE|L1 84263 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 200.5-12 chr11 41404264 41404459 + 1.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 55275 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 265.75-12 chr5 23739326 23739608 + 1.5 NA Intergenic Intergenic -211881 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 195.5-49 chr20 37095367 37095569 + 1.5 NA intron (NM_002895, intron 1 of 21) intron (NM_002895, intron 1 of 21) 529 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 179.75-54 chr7 43257702 43257994 + 1.5 NA intron (NM_001287059, intron 2 of 27) MIR|SINE|MIR 106953 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 117.75-10 chr10 93698357 93698448 + 1.5 NA intron (NM_145246, intron 2 of 13) intron (NM_145246, intron 2 of 13) 4170 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 138-76 chr7 52120029 52120211 + 1.5 NA Intergenic L1MD2|LINE|L1 -726864 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 149.5-36 chr15 96988182 96988348 + 1.5 NA Intergenic L1MCa|LINE|L1 204830 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 178.5-13 chr14 49523956 49524159 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 62323 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 276-2 chr12 54650667 54650923 + 1.5 NA Intergenic Intergenic -2430 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 163-2 chr1 91238803 91238952 + 1.5 NA Intergenic AluSg|SINE|Alu 165960 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 227.25-11 chr12 15227353 15227642 + 1.5 NA Intergenic L1MEg|LINE|L1 -6080 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 174-41 chr5 9280868 9281024 + 1.5 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -227051 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 384.75 chr1 44672944 44673277 + 1.5 NA intron (NM_001300748, intron 1 of 2) intron (NM_001300748, intron 1 of 2) 1371 NM_024587 79639 Hs.22157 NM_024587 ENSG00000126106 TMEM53 NET4 transmembrane protein 53 protein-coding 193.5-5 chr10 15895424 15895570 + 1.5 NA Intergenic Intergenic -34964 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 163.5-2 chr1 41078260 41078397 + 1.5 NA intron (NM_001172222, intron 4 of 10) L1MEg|LINE|L1 -56573 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 243.5-24 chr5 173444559 173444882 + 1.5 NA Intergenic L2a|LINE|L2 97265 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 211.5-46 chr6 75503405 75503614 + 1.5 NA Intergenic Intergenic -9709 NM_001289987 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 220.75-37 chr9 29542121 29542425 + 1.5 NA Intergenic Intergenic -328672 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 199.25-39 chr8 135367577 135367898 + 1.5 NA Intergenic MER74A|LTR|ERVL -89719 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 163.5-79 chr6 48866908 48867046 + 1.5 NA Intergenic Intergenic 596276 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 216.75-8 chr10 68912152 68912309 + 1.5 NA intron (NM_024045, intron 4 of 14) AluJr4|SINE|Alu 10915 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 242.25-25 chr6 108287639 108287888 + 1.5 NA Intergenic L1MA9|LINE|L1 -7291 NR_136553 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 260.25-13 chr20 21211084 21211357 + 1.5 NA intron (NM_018474, intron 7 of 12) intron (NM_018474, intron 7 of 12) 7069 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 176.5-62 chr3 109887040 109887181 + 1.5 NA Intergenic Intergenic 284282 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 185.75-18 chr12 133124488 133124754 + 1.5 NA intron (NM_001277291, intron 1 of 1) L1MEi|LINE|L1 5852 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 261-25 chr2 114741677 114741978 + 1.5 NA intron (NM_001321910, intron 2 of 26) MLT1C|LTR|ERVL-MaLR 91721 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 148-69 chr9 72860175 72860348 + 1.5 NA Intergenic MER99|DNA|hAT? 13848 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 337-14 chr8 119701286 119701565 + 1.5 NA Intergenic LFSINE_Vert|SINE|tRNA -28035 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 173-35 chr22 27988804 27988991 + 1.5 NA intron (NM_001145418, intron 21 of 22) intron (NM_001145418, intron 21 of 22) -68285 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 157.25-12 chr11 35224708 35224812 + 1.5 NA intron (NM_001001389, intron 16 of 16) AluJb|SINE|Alu 61810 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 275.25-6 chr14 58792231 58792538 + 1.5 NA Intergenic Intergenic -35904 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 124-37 chr21 33022678 33022801 + 1.5 NA Intergenic Intergenic -3196 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 247-20 chr3 118754340 118754693 + 1.5 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 56317 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 199-14 chr12 122166880 122167111 + 1.5 NA promoter-TSS (NM_152759) promoter-TSS (NM_152759) -724 NM_152759 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 147-77 chr8 54489771 54489917 + 1.5 NA Intergenic Intergenic 31909 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 384-2 chr13 77894871 77895248 + 1.5 NA TTS (NM_001201397) TTS (NM_001201397) 23772 NM_001122659 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 389.25 chr11 8218956 8219261 + 1.5 NA Intergenic Intergenic 44770 NM_002315 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 143-36 chr2 66291594 66291756 + 1.5 NA Intergenic Intergenic 66653 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 238-30 chr6 89656920 89657197 + 1.5 NA intron (NM_014611, intron 90 of 101) intron (NM_014611, intron 90 of 101) -18311 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 252.75 chr10 70566286 70566507 + 1.5 NA intron (NM_014431, intron 19 of 19) MIRb|SINE|MIR 36345 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 268.5-4 chr10 97854955 97855175 + 1.5 NA intron (NM_001010917, intron 1 of 4) MLT1J2|LTR|ERVL-MaLR 5222 NM_001010917 401647 Hs.567524 NM_001010917 ENSG00000155265 GOLGA7B C10orf132|C10orf133|bA451M19.3|bA459F3.4 golgin A7 family member B protein-coding 290.5 chr1 87716515 87716774 + 1.5 NA Intergenic MIRb|SINE|MIR -344989 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 197.25-45 chr3 191048238 191048446 + 1.5 NA Intergenic L1M4b|LINE|L1 -150899 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 194.5-42 chr22 22955869 22956089 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack 68163 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 263.5-32 chr7 108814782 108815160 + 1.5 NA Intergenic L1ME2|LINE|L1 69616 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 187-19 chr19 36576160 36576405 + 1.5 NA intron (NR_110705, intron 2 of 4) intron (NR_110705, intron 2 of 4) -2990 NM_001352273 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 165-16 chr12 49402356 49402490 + 1.5 NA intron (NM_001293285, intron 3 of 14) L2a|LINE|L2 13249 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 263.5-5 chr10 125456618 125456948 + 1.5 NA Intergenic L1PA13|LINE|L1 -117588 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 199-47 chr8 86415143 86415362 + 1.5 NA intron (NM_007013, intron 9 of 24) intron (NM_007013, intron 9 of 24) 72705 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 142.25-56 chr5 93096550 93096784 + 1.5 NA Intergenic Intergenic 474676 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 235-24 chr2 76593142 76593486 + 1.5 NA Intergenic Intergenic -392651 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 406-6 chr3 122128760 122129057 + 1.5 NA Intergenic L1P4|LINE|L1 51059 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 227.5-3 chr1 46111887 46112204 + 1.5 NA intron (NM_001303427, intron 1 of 9) L2a|LINE|L2 18628 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 290.5-20 chr3 148697189 148697457 + 1.5 NA promoter-TSS (NM_031850) promoter-TSS (NM_031850) -548 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 247.5-51 chr9 32542612 32542869 + 1.5 NA exon (NM_005802, exon 3 of 3) exon (NM_005802, exon 3 of 3) -8404 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 361.5-8 chr8 86127312 86127821 + 1.5 NA intron (NM_152565, intron 2 of 7) AluJo|SINE|Alu 28656 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 265-9 chr16 47979974 47980242 + 1.5 NA Intergenic Intergenic 14419 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 232.5-2 chr1 169885093 169885273 + 1.5 NA intron (NM_181093, intron 2 of 13) intron (NM_181093, intron 2 of 13) 8713 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 272.5-9 chr3 37014639 37014994 + 1.5 NA intron (NM_001354624, intron 9 of 16) intron (NM_001354624, intron 9 of 16) 21466 NM_001354623 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 269.5-20 chr4 174963764 174964106 + 1.5 NA intron (NM_001278126, intron 5 of 5) AluSg4|SINE|Alu 45577 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 222.5-11 chr12 51589712 51590171 + 1.5 NA Intergenic L1ME1|LINE|L1 -1292 NM_014191 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 352.5-13 chr7 16130210 16130580 + 1.5 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -80091 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 166.5-69 chr4 5959367 5959529 + 1.5 NA exon (NM_001364690, exon 11 of 11) exon (NM_001364690, exon 11 of 11) -36120 NR_039608 100616201 NR_039608 ENSG00000263631 MIR378D1 mir-378d-1 microRNA 378d-1 ncRNA 306.75-2 chr11 106054526 106054843 + 1.5 NA intron (NM_001330359, intron 2 of 2) intron (NM_001330359, intron 2 of 2) 22663 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 243-10 chr17 72428101 72428337 + 1.5 NA intron (NR_152516, intron 2 of 3) intron (NR_152516, intron 2 of 3) 85408 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 175-25 chr2 115077447 115077670 + 1.5 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 12985 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 186-30 chr2 182955440 182955612 + 1.5 NA intron (NM_013436, intron 20 of 30) (AT)n|Simple_repeat|Simple_repeat 82931 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 154.5-5 chr1 171341773 171341987 + 1.5 NA TTS (NR_002719) TTS (NR_002719) 2984 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 282-22 chr6 125955667 125956033 + 1.5 NA promoter-TSS (NM_138571) promoter-TSS (NM_138571) -920 NM_138571 135114 Hs.72325 NM_138571 ENSG00000111911 HINT3 HINT4 histidine triad nucleotide binding protein 3 protein-coding 139.5-102 chr7 130477609 130477771 + 1.5 NA Intergenic Intergenic -8485 NM_001253901 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 189.5-63 chr7 80926323 80926595 + 1.5 NA Intergenic Intergenic -4070 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 144.5-32 chr13 19619416 19619612 + 1.5 NA Intergenic MER31B|LTR|ERV1 -14145 NM_017520 54737 Hs.269654 NM_017520 ENSG00000196199 MPHOSPH8 HSMPP8|TWA3|mpp8 M-phase phosphoprotein 8 protein-coding 321-8 chr2 217158632 217158859 + 1.5 NA Intergenic Intergenic -123988 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 185-14 chr15 46879563 46879838 + 1.5 NA Intergenic Intergenic -304389 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 158.75-19 chr14 34669690 34669869 + 1.5 NA Intergenic Intergenic -39631 NM_001366519 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 261-37 chr5 43365325 43365640 + 1.5 NA Intergenic L1P3|LINE|L1 31655 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 164.5-39 chr2 123736583 123736723 + 1.5 NA Intergenic L1MB4|LINE|L1 288521 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 155.5-53 chr2 39470665 39470828 + 1.5 NA intron (NR_037875, intron 3 of 5) L1ME3G|LINE|L1 33330 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 514.25-2 chr10 114586896 114587725 + 1.5 NA intron (NM_001352440, intron 2 of 20) intron (NM_001352440, intron 2 of 20) 26426 NM_001352442 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 222-32 chr4 58651473 58651760 + 1.5 NA Intergenic Intergenic -115288 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 303.5-18 chr7 80041095 80041321 + 1.5 NA Intergenic Intergenic -93623 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 190-49 chr7 82841781 82842001 + 1.5 NA intron (NM_033026, intron 13 of 24) intron (NM_033026, intron 13 of 24) 320993 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 247.5-26 chr4_GL000008v2_random 2056 2370 + 1.5 NA Intergenic Intergenic 175958 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 198-27 chr21 27218251 27218592 + 1.5 NA Intergenic L2c|LINE|L2 -251333 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 310-3 chr11 4510538 4510814 + 1.5 NA Intergenic Intergenic 21797 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 319.5-12 chr5 34651626 34651902 + 1.5 NA Intergenic MIRb|SINE|MIR -4564 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 138-32 chr18 63461934 63462086 + 1.5 NA Intergenic AluJb|SINE|Alu -14948 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 249.75-17 chr3 89270927 89271167 + 1.5 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 163426 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 278-18 chr4 124163809 124164090 + 1.5 NA Intergenic L1PB3|LINE|L1 389685 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 274.5-10 chr16 7143347 7143660 + 1.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -189342 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 171.5-3 chr1 45574975 45575308 + 1.5 NA Intergenic AluSc|SINE|Alu -8847 NM_001195193 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 114-9 chr1 237700865 237700971 + 1.5 NA intron (NM_001035, intron 65 of 104) intron (NM_001035, intron 65 of 104) -161257 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 246 chr1 3515279 3515586 + 1.5 NA exon (NM_001409, exon 6 of 37) exon (NM_001409, exon 6 of 37) 45358 NR_030277 693135 NR_030277 ENSG00000207776 MIR551A MIRN551A|mir-551a microRNA 551a ncRNA 318-3 chr1 150390910 150391222 + 1.5 NA intron (NM_015203, intron 1 of 10) L1MEd|LINE|L1 26955 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 151.5-33 chr16 79461246 79461394 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 139417 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 256.5-3 chr10 67622734 67623048 + 1.5 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 42769 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 174-11 chr12 127817559 127817694 + 1.5 NA Intergenic L1MC3|LINE|L1 -63991 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 143-38 chr2 85301380 85301527 + 1.5 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 26536 NM_001206840 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 217.75-30 chr4 91224754 91224991 + 1.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 989841 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 139.75-11 chr10 32317309 32317476 + 1.5 NA intron (NM_001282391, intron 1 of 13) AluSz|SINE|Alu 29766 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 164.5-36 chr2 21952597 21952756 + 1.5 NA Intergenic Intergenic -242024 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 236.25-14 chr2 23761030 23761294 + 1.5 NA intron (NR_125717, intron 25 of 28) intron (NR_125717, intron 25 of 28) 165961 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 165-50 chr8 69203744 69203919 + 1.5 NA Intergenic Intergenic -99641 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 118.5-96 chr6 141115117 141115241 + 1.5 NA Intergenic L1ME3B|LINE|L1 431365 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 311.25-4 chr2 101747509 101747858 + 1.5 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 49976 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 287.5-11 chr15 77835796 77836107 + 1.5 NA Intergenic Intergenic -15051 NM_001301186 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 172-44 chr8 69773321 69773613 + 1.5 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 59702 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 138.5-9 chr1 187901182 187901295 + 1.5 NA Intergenic MIR|SINE|MIR 457610 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 253-10 chr16 63411015 63411210 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -1374674 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 171-11 chr10 96368450 96368597 + 1.5 NA intron (NM_012465, intron 20 of 20) MIRb|SINE|MIR -9158 NM_001284322 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 285.75-3 chr10 58855831 58856196 + 1.5 NA Intergenic Intergenic 140998 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 188.5-18 chr15 88735818 88735983 + 1.5 NA Intergenic L1MC5a|LINE|L1 -67536 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 268-17 chr3 1598764 1599067 + 1.5 NA Intergenic Intergenic -499888 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 204.5-13 chr13 108985206 108985563 + 1.5 NA intron (NM_015011, intron 20 of 34) intron (NM_015011, intron 20 of 34) 181919 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 208.5-39 chr2 14325243 14325686 + 1.5 NA intron (NR_103814, intron 1 of 3) L2c|LINE|L2 75494 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 218.25-29 chr21 45709707 45709923 + 1.5 NA intron (NM_001348238, intron 2 of 16) L1MC3|LINE|L1 -38199 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 169.25-14 chr11 127963501 127963757 + 1.5 NA Intergenic Intergenic -245137 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 150.75-32 chr2 78114241 78114364 + 1.5 NA intron (NR_110287, intron 5 of 5) intron (NR_110287, intron 5 of 5) 25572 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 162.5-57 chr3 96269498 96269659 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -90386 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 220-28 chr5 147126196 147126371 + 1.5 NA Intergenic L1PA13|LINE|L1 -44763 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 228.5-15 chr2 18189473 18189784 + 1.5 NA Intergenic Intergenic 310961 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 277.5-22 chr7 149668560 149668802 + 1.5 NA Intergenic L1MEg|LINE|L1 -43891 NR_027789 79970 Hs.520785 NM_024910 ENSG00000133624 ZNF767P ZNF767 zinc finger family member 767, pseudogene pseudo 297-8 chr12 20307982 20308246 + 1.5 NA Intergenic L1M2a|LINE|L1 -61131 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 393.5-2 chr6 135123643 135124107 + 1.5 NA Intergenic (ACA)n|Simple_repeat|Simple_repeat -57433 NM_001130172 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 136.5-63 chr21 31590476 31590642 + 1.5 NA Intergenic Intergenic 31326 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 212.25-34 chr5 36175852 36176160 + 1.5 NA intron (NM_032637, intron 7 of 9) intron (NM_032637, intron 7 of 9) 23895 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 246-7 chr14 46219528 46219734 + 1.5 NA intron (NR_102702, intron 3 of 3) L1MEc|LINE|L1 155472 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 227.5-43 chr5 10359485 10359839 + 1.5 NA intron (NM_001270661, intron 1 of 22) Tigger2b_Pri|DNA|TcMar-Tigger 5967 NM_001270661 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 182.5-32 chr2 150296107 150296446 + 1.5 NA Intergenic Intergenic -39269 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 136-4 chr1 206810105 206810247 + 1.5 NA intron (NM_153758, intron 2 of 6) ERVL-E-int|LTR|ERVL -18701 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 143-28 chr16 58068185 58068308 + 1.5 NA Intergenic L1MB4|LINE|L1 42492 NM_002428 4324 Hs.80343 NM_002428 ENSG00000102996 MMP15 MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 protein-coding 236.25-37 chr6 112769141 112769413 + 1.5 NA Intergenic Intergenic 421947 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 130.75-60 chr5 103121580 103121707 + 1.5 NA intron (NM_001345878, intron 1 of 28) L2b|LINE|L2 1342 NM_001345872 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 196.5-32 chr16 61341185 61341342 + 1.5 NA Intergenic L1P4e|LINE|L1 -285497 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 157.25-65 chr8 141904986 141905235 + 1.5 NA Intergenic Intergenic -118797 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 195.5-16 chr11 113526511 113526754 + 1.5 NA Intergenic L1M7|LINE|L1 -51234 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 255.75-3 chr14 19886254 19886491 + 1.5 NA Intergenic L1M4a2|LINE|L1 10104 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 366.5-2 chr1 153402314 153402677 + 1.5 NA intron (NM_001319198, intron 1 of 2) L2c|LINE|L2 -11307 NM_001319196 6279 Hs.416073 NM_002964 ENSG00000143546 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 211-26 chr5 61137000 61137156 + 1.5 NA intron (NM_174889, intron 3 of 3) L2c|LINE|L2 -25238 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 306.5-8 chr3 58231976 58232319 + 1.5 NA Intergenic AluSx|SINE|Alu -5355 NM_020676 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 168.5-21 chr13 89794070 89794235 + 1.5 NA Intergenic L1MA9|LINE|L1 -229739 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 171.25-56 chr8 82602844 82603108 + 1.5 NA Intergenic L1M5|LINE|L1 -309128 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 155-36 chr3 51696723 51696864 + 1.5 NA intron (NR_024012, intron 2 of 3) intron (NR_024012, intron 2 of 3) -10275 NM_000839 2912 Hs.121510 NM_000839 ENSG00000164082 GRM2 GLUR2|GPRC1B|MGLUR2|mGlu2 glutamate metabotropic receptor 2 protein-coding 223-32 chr4 62273402 62273665 + 1.5 NA Intergenic Intergenic -111768 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 142-57 chr5 128754742 128754881 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -210316 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 267-12 chr17 71032627 71032813 + 1.5 NA Intergenic Intergenic 169459 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 126.25-79 chr6 141939145 141939243 + 1.5 NA Intergenic L1MEc|LINE|L1 149605 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 178.5-56 chr4 72658221 72658370 + 1.5 NA Intergenic Intergenic -89074 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 160.5-81 chr9 38454038 38454199 + 1.5 NA Intergenic Intergenic -29664 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 183.25-31 chr3 81193593 81193860 + 1.5 NA Intergenic L2a|LINE|L2 199858 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 158-10 chr11 40787087 40787272 + 1.5 NA intron (NM_020929, intron 1 of 4) HAL1ME|LINE|L1 -494049 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 299-14 chr3 110791253 110791556 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 278555 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 252.75-33 chr7 128976046 128976374 + 1.5 NA intron (NM_001191028, intron 15 of 21) intron (NM_001191028, intron 15 of 21) 34942 NM_001364314 3663 Hs.521181 NM_032643 ENSG00000128604 IRF5 SLEB10 interferon regulatory factor 5 protein-coding 344.5-3 chr10 114135517 114135909 + 1.5 NA intron (NM_001321829, intron 10 of 16) intron (NM_001321829, intron 10 of 16) 38466 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 249-8 chr14 62785548 62785774 + 1.5 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 259797 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 228.5-13 chr19 35536156 35536476 + 1.5 NA intron (NM_014364, intron 1 of 10) AluSx1|SINE|Alu 2860 NM_014364 26330 Hs.248017 NM_014364 ENSG00000105679 GAPDHS GAPD2|GAPDH-2|GAPDS|HEL-S-278|HSD-35 glyceraldehyde-3-phosphate dehydrogenase, spermatogenic protein-coding 192.5-31 chr2 206722710 206722852 + 1.5 NA Intergenic Intergenic -4385 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 296-16 chr4 61933464 61933787 + 1.5 NA intron (NM_001322246, intron 12 of 25) intron (NM_001322246, intron 12 of 25) 228140 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 229.5-2 chr1 94438371 94438564 + 1.5 NA intron (NM_002858, intron 1 of 22) Tigger1|DNA|TcMar-Tigger 20078 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 192-8 chr11 106089596 106089831 + 1.5 NA intron (NM_015423, intron 2 of 5) intron (NM_015423, intron 2 of 5) -11975 NM_001330359 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 179.25-19 chr2 59681680 59681866 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 464065 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 229-15 chr16 11753166 11753325 + 1.5 NA intron (NM_014153, intron 21 of 22) intron (NM_014153, intron 21 of 22) -10388 NM_001324022 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 182-6 chr10 12238506 12238642 + 1.5 NA intron (NM_006023, intron 10 of 12) intron (NM_006023, intron 10 of 12) 42386 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 240.5-13 chr10 105872672 105872918 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -52462 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 357-9 chr6 54232884 54233237 + 1.5 NA intron (NM_138569, intron 11 of 12) OldhAT1|DNA|hAT-Ac -75381 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 162.5-14 chr10 131241073 131241285 + 1.5 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 70542 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 147.75-33 chr18 59685685 59685867 + 1.5 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 11647 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 250.5-16 chr18 68426050 68426326 + 1.5 NA Intergenic Intergenic 288920 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 318-27 chr8 132817606 132818016 + 1.5 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) 42423 NM_001277196 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 280.5-25 chr6 170142379 170142609 + 1.5 NA Intergenic L1MA8|LINE|L1 -18148 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 228-23 chr2 190020643 190020992 + 1.5 NA Intergenic L1MB3|LINE|L1 41912 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 327.75-4 chr13 73916283 73916683 + 1.5 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 217446 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 181-33 chr2 235247749 235247917 + 1.5 NA Intergenic L1M5|LINE|L1 220098 NM_001371306 306 chr1 63645801 63646048 + 1.5 NA intron (NM_001172818, intron 7 of 10) L2c|LINE|L2 22708 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 261.75-13 chr2 20317385 20317569 + 1.5 NA intron (NM_001282752, intron 2 of 19) intron (NM_001282752, intron 2 of 19) 9909 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 252-3 chr11 97569489 97569723 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 1061181 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 225.25-19 chr3 15341967 15342297 + 1.5 NA promoter-TSS (NM_001018009) promoter-TSS (NM_001018009) -752 NM_001018009 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 248.25 chr1 43545379 43545647 + 1.5 NA intron (NM_001329137, intron 4 of 34) intron (NM_001329137, intron 4 of 34) 14630 NM_002840 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 194.5-71 chr7 109993378 109993651 + 1.5 NA Intergenic L1PA16|LINE|L1 -33301 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 203-27 chr5 52325135 52325331 + 1.5 NA Intergenic L1MCa|LINE|L1 317202 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 253-22 chr7 39387512 39387787 + 1.5 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 18697 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 387-8 chr8 130254434 130254830 + 1.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 41901 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 142.5-76 chr5 44436026 44436169 + 1.5 NA Intergenic L2|LINE|L2 -46677 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 245.75-6 chr12 71759835 71760175 + 1.5 NA intron (NM_014999, intron 1 of 6) MIRb|SINE|MIR 5142 NM_014999 23011 Hs.524590 NM_014999 ENSG00000080371 RAB21 - RAB21, member RAS oncogene family protein-coding 236-10 chr12 58378014 58378326 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -213532 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 235.5-58 chr8 143875592 143875804 + 1.5 NA intron (NM_031308, intron 1 of 1) intron (NM_031308, intron 1 of 1) 2766 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 152.5-11 chr10 55044928 55045087 + 1.5 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -243716 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 201-32 chr3 87960328 87960516 + 1.5 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -22154 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 231.5-31 chr3 179765049 179765305 + 1.5 NA intron (NM_003940, intron 18 of 20) intron (NM_003940, intron 18 of 20) 112137 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 143-58 chr5 67088150 67088361 + 1.5 NA intron (NM_001297651, intron 2 of 25) intron (NM_001297651, intron 2 of 25) 83600 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 187.75-53 chr8 79552085 79552320 + 1.5 NA Intergenic L1PB3|LINE|L1 -58915 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 166.5-87 chr5 108981578 108981726 + 1.5 NA intron (NR_146155, intron 13 of 19) MIR|SINE|MIR 57046 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 197.75-42 chr6 107055527 107055861 + 1.5 NA Intergenic AluY|SINE|Alu 27495 NM_001142470 51250 Hs.486084 NM_016487 ENSG00000130349 C6orf203 HSPC230|PRED31 chromosome 6 open reading frame 203 protein-coding 157.75-40 chr2 76817217 76817432 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -168641 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 140-52 chr5 100204376 100204596 + 1.5 NA Intergenic Intergenic 183768 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 226.25-21 chr2 179618469 179618940 + 1.5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -32798 NR_104234 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 320.5-11 chr22 31730484 31730802 + 1.5 NA intron (NM_173566, intron 2 of 8) L1MC4a|LINE|L1 19489 NM_173566 253143 Hs.438906 NM_173566 ENSG00000183530 PRR14L C22orf30 proline rich 14 like protein-coding 183.75-28 chr2 17055178 17055475 + 1.5 NA Intergenic L1M5|LINE|L1 -389492 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 265.25-23 chr5 74795590 74795801 + 1.5 NA intron (NM_015566, intron 11 of 12) intron (NM_015566, intron 11 of 12) -28324 NM_170681 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 164-19 chr14 65625539 65625769 + 1.5 NA intron (NM_004480, intron 4 of 9) intron (NM_004480, intron 4 of 9) 154552 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 367.25 chr1 64561398 64561712 + 1.5 NA intron (NM_020925, intron 2 of 26) L1MEf|LINE|L1 -18292 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 232-5 chr12 92990142 92990348 + 1.5 NA Intergenic MER92B|LTR|ERV1 -60950 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 222.5-30 chr21 19155188 19155475 + 1.5 NA Intergenic L1PA15-16|LINE|L1 -395519 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 261-15 chr14 69579582 69579863 + 1.5 NA Intergenic Intergenic -4851 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 132.75-7 chr1 166381269 166381389 + 1.5 NA Intergenic Intergenic 108710 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 153-52 chr9 85001867 85002001 + 1.5 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 296033 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 183.75-46 chr6 52115624 52115841 + 1.5 NA Intergenic GA-rich|Low_complexity|Low_complexity -28119 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 114.5-106 chr8 98815024 98815152 + 1.5 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 10583 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 210.5-33 chr2 135621863 135622051 + 1.5 NA intron (NM_001282798, intron 6 of 25) intron (NM_001282798, intron 6 of 25) 35605 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 195.75 chr1 14408554 14408800 + 1.5 NA intron (NR_149058, intron 1 of 4) MLT1A|LTR|ERVL-MaLR 11296 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 215-2 chr1 36714220 36714425 + 1.5 NA Intergenic L1MB7|LINE|L1 -231008 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 287-19 chr7 41456742 41457130 + 1.5 NA Intergenic L1MC4a|LINE|L1 -236983 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 360-4 chr18 77488380 77488832 + 1.5 NA Intergenic Intergenic 238758 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 346.75-2 chr2 182283496 182283899 + 1.5 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -41634 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 160.25-11 chr11 82616520 82616715 + 1.5 NA Intergenic Intergenic 117247 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 161-43 chr2 175078244 175078427 + 1.5 NA intron (NR_045770, intron 14 of 15) intron (NR_045770, intron 14 of 15) -72956 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 151.5-51 chr3 57473597 57473762 + 1.5 NA intron (NM_001366028, intron 13 of 73) (TA)n|Simple_repeat|Simple_repeat 70665 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 298.5-18 chr6 144439182 144439466 + 1.5 NA intron (NM_007124, intron 11 of 73) intron (NM_007124, intron 11 of 73) 33669 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 281.5-2 chr1 165388471 165388665 + 1.5 NA Intergenic Intergenic -31853 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 123.5-118 chrUn_GL000216v2 73246 73397 + 1.5 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 126.5-115 chr8 79524073 79524243 + 1.5 NA Intergenic Intergenic -86959 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 333.5-11 chr4 47510436 47510835 + 1.5 NA intron (NM_020453, intron 1 of 22) intron (NM_020453, intron 1 of 22) 25360 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 259.5-9 chr12 124859173 124859359 + 1.5 NA intron (NR_160424, intron 1 of 11) AluY|SINE|Alu 4598 NM_001367987 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 301.75-12 chr5 108800491 108800701 + 1.5 NA intron (NM_001308028, intron 3 of 17) AluJb|SINE|Alu 51648 NR_146155 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 177-39 chr3 71592977 71593186 + 1.5 NA Intergenic MIRb|SINE|MIR -9092 NM_032682 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 300.5-3 chr14 58056298 58056533 + 1.5 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 95798 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 250.5-21 chr22 40868003 40868322 + 1.5 NA intron (NM_022098, intron 1 of 9) intron (NM_022098, intron 1 of 9) -6049 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 186.5-12 chr11 3753188 3753379 + 1.5 NA intron (NR_157590, intron 11 of 31) intron (NR_157590, intron 11 of 31) 44263 NR_157591 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 144-59 chr5 7668199 7668328 + 1.5 NA intron (NM_020546, intron 4 of 24) MLT2D|LTR|ERVL 182870 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 194.75-48 chr8 108757251 108757569 + 1.5 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 30184 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 216.75-31 chr4 54893320 54893532 + 1.5 NA Intergenic Intergenic 232169 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 329.75 chr1 85909160 85909616 + 1.5 NA intron (NM_152890, intron 26 of 59) intron (NM_152890, intron 26 of 59) -200955 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 138-75 chr7 31396748 31396840 + 1.5 NA Intergenic MER57F|LTR|ERV1 -56068 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 177.75-11 chr12 132096451 132096679 + 1.5 NA intron (NR_003290, intron 3 of 9) L1ME1|LINE|L1 12282 NR_003290 347918 Hs.122115 NM_182613 ENSG00000185684 EP400P1 EP400NL EP400 pseudogene 1 pseudo 183.5-40 chr2 132740412 132740590 + 1.5 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -68975 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 207.75-26 chr22 45665527 45665699 + 1.5 NA Intergenic Intergenic -6185 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 189-9 chr1 238597815 238598036 + 1.5 NA Intergenic Intergenic -111908 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 302-18 chrX 10599642 10599907 + 1.5 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -9814 NM_001347733 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 208-27 chr3 96859986 96860345 + 1.5 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 45571 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 325-11 chrX 77888501 77888873 + 1.5 NA intron (NM_032121, intron 1 of 9) intron (NM_032121, intron 1 of 9) 6748 NM_001367916 84061 Hs.323562 NM_032121 ENSG00000102158 MAGT1 IAP|MRX95|OST3B|PRO0756|SLC58A1|XMEN|bA217H1.1 magnesium transporter 1 protein-coding 339-8 chr3 38273009 38273374 + 1.5 NA intron (NM_004256, intron 1 of 9) intron (NM_004256, intron 1 of 9) 7379 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 186.5-47 chr4 163859683 163860093 + 1.5 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) -246354 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 150-89 chrX 98645675 98645879 + 1.5 NA Intergenic MER1B|DNA|hAT-Charlie -1081242 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 225.75-19 chr3 189470407 189470621 + 1.5 NA Intergenic Intergenic -126232 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 218-2 chr1 150214951 150215172 + 1.5 NA Intergenic Intergenic 19617 NM_001136479 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 164.5-19 chr14 19880096 19880308 + 1.5 NA Intergenic Intergenic 3934 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 272.5-7 chr21 24447063 24447324 + 1.5 NA intron (NR_135520, intron 4 of 5) THE1D|LTR|ERVL-MaLR 18453 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 165.5-82 chr7 37383055 37383166 + 1.5 NA intron (NM_001206480, intron 1 of 21) L1MC4|LINE|L1 -29442 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 223-6 chr10 70939741 70939942 + 1.5 NA intron (NR_134313, intron 1 of 2) intron (NR_134313, intron 1 of 2) 788 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 169-13 chr13 43461284 43461417 + 1.5 NA intron (NM_001347968, intron 3 of 17) intron (NM_001347968, intron 3 of 17) 12498 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 815 chr20 28494661 28495678 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 107496 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 405-7 chr6 52163386 52163820 + 1.5 NA Intergenic Intergenic -12580 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 147-61 chr4 131361492 131361694 + 1.5 NA Intergenic L1MC2|LINE|L1 -403245 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 157-60 chr7 38095504 38095647 + 1.5 NA Intergenic AluJr|SINE|Alu -82670 NM_001363344 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 285.25-15 chr22 36681412 36681686 + 1.5 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 21309 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 143.25-32 chr17 19805049 19805144 + 1.5 NA intron (NM_014683, intron 14 of 26) intron (NM_014683, intron 14 of 26) -56798 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 241.5-6 chr11 50214743 50215051 + 1.5 NA Intergenic Intergenic 83565 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 256.5-14 chr14 58352707 58352895 + 1.5 NA intron (NM_002892, intron 16 of 23) intron (NM_002892, intron 16 of 23) -43129 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 291.5-8 chr20 53740903 53741266 + 1.5 NA Intergenic Intergenic 132730 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 183.5-42 chr20 39613634 39613825 + 1.5 NA Intergenic MIR|SINE|MIR -388981 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 234.5-45 chr9 106411278 106411479 + 1.5 NA Intergenic L1MC5|LINE|L1 -189550 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 132.5-91 chr5 37932833 37933038 + 1.5 NA Intergenic Charlie18a|DNA|hAT-Charlie -15556 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 207-32 chr20 52496067 52496244 + 1.5 NA Intergenic MER58B|DNA|hAT-Charlie -124683 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 123-66 chr8 107080517 107080631 + 1.5 NA Intergenic Intergenic 255941 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 310.5-6 chr20 20479094 20479339 + 1.5 NA intron (NM_020343, intron 36 of 39) L1M5|LINE|L1 111112 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 141.75-20 chr13 54562439 54562631 + 1.5 NA Intergenic Intergenic -250487 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 285.75-9 chr15 60310854 60311126 + 1.5 NA Intergenic L1ME3D|LINE|L1 86996 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 132-34 chr2 99175308 99175436 + 1.5 NA intron (NM_001320419, intron 1 of 5) L1MC4a|LINE|L1 5686 NM_138798 129531 Hs.14222 NM_138798 ENSG00000158411 MITD1 - microtubule interacting and trafficking domain containing 1 protein-coding 291-12 chr4 117153468 117153926 + 1.5 NA Intergenic AluSz|SINE|Alu -68121 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 302-8 chr16 78462552 78462782 + 1.5 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 363013 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 270.75-18 chr4 62743707 62743978 + 1.5 NA Intergenic Intergenic -582077 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 267.5-16 chr2 183365101 183365355 + 1.5 NA Intergenic L1MA4A|LINE|L1 240785 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 405.5-3 chr19 34492791 34493203 + 1.5 NA intron (NM_001080436, intron 2 of 7) intron (NM_001080436, intron 2 of 7) 11239 NM_001080436 126374 Hs.585010 NM_001080436 ENSG00000142279 WTIP - WT1 interacting protein protein-coding 289.5-18 chr4 5220950 5221250 + 1.5 NA intron (NM_001306082, intron 4 of 12) intron (NM_001306082, intron 4 of 12) 169620 NM_001306082 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 150.5-68 chr4 180791058 180791190 + 1.5 NA Intergenic HAL1|LINE|L1 368025 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 200.25-35 chr4 49110657 49110890 + 1.5 NA Intergenic (CATTC)n|Satellite|Satellite 124131 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 254.75-9 chr12 95804597 95804774 + 1.5 NA intron (NR_135016, intron 1 of 1) intron (NR_135016, intron 1 of 1) 1588 NR_135016 105369920 Hs.145556 NR_135016 ENSG00000258292 LINC02410 - long intergenic non-protein coding RNA 2410 ncRNA 210-9 chr13 56432644 56432908 + 1.5 NA Intergenic Intergenic -708142 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 246.75-29 chr6 151470736 151471002 + 1.5 NA TTS (NM_001286562) TTS (NM_001286562) 18403 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 180-23 chr14 70218205 70218442 + 1.5 NA intron (NR_135825, intron 2 of 3) MIR|SINE|MIR -29253 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 256.5-13 chr14 38327783 38327972 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -71784 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 172-45 chr8 74738141 74738446 + 1.5 NA intron (NR_033830, intron 4 of 5) intron (NR_033830, intron 4 of 5) 32600 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 298-13 chr2 29910615 29910878 + 1.5 NA intron (NM_004304, intron 1 of 28) L1MEc|LINE|L1 10840 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 154.5-39 chr18 45749534 45749687 + 1.5 NA intron (NM_001308278, intron 8 of 8) intron (NM_001308278, intron 8 of 8) 22657 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 181.5-66 chr7 29241928 29242074 + 1.5 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -33031 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 258.75-15 chr16 55982531 55982741 + 1.5 NA Intergenic L1MB7|LINE|L1 -26605 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 200-7 chr11 6515198 6515419 + 1.5 NA intron (NM_144666, intron 7 of 42) L1MC4|LINE|L1 18012 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 185-6 chr11 45080463 45080626 + 1.5 NA Intergenic Intergenic -13469 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 273-19 chr20 37218849 37219291 + 1.5 NA intron (NM_001135771, intron 8 of 16) L1MB7|LINE|L1 37838 NM_001184731 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 177.75-63 chr8 120743254 120743448 + 1.5 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -17902 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 172-2 chr1 201796010 201796160 + 1.5 NA intron (NM_020443, intron 15 of 29) L1MB7|LINE|L1 -12526 NR_031599 100302158 NR_031599 ENSG00000221028 MIR1231 MIRN1231|hsa-mir-1231 microRNA 1231 ncRNA 187.5-58 chr5 93440600 93440803 + 1.5 NA intron (NR_021491, intron 4 of 5) MLT2B1|LTR|ERVL 130642 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 235-41 chr8 125229492 125229821 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 137796 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 212.75-34 chr7 105957002 105957143 + 1.5 NA Intergenic L1MB8|LINE|L1 -6192 NM_152750 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 171.75-18 chr14 101815987 101816144 + 1.5 NA intron (NM_178586, intron 1 of 12) intron (NM_178586, intron 1 of 12) 6202 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 187.75-10 chr14 47238733 47238903 + 1.5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 104428 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 250-13 chr17 60078089 60078366 + 1.5 NA intron (NM_022070, intron 1 of 19) intron (NM_022070, intron 1 of 19) 704 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 228.75-18 chr18 890592 890822 + 1.5 NA Intergenic L1ME3|LINE|L1 -14164 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 183.5-25 chr15 92815477 92815653 + 1.5 NA Intergenic MIRb|SINE|MIR 20081 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 162-21 chr2 24735836 24735970 + 1.5 NA intron (NM_001362950, intron 17 of 23) L3|LINE|CR1 -57212 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 389-3 chr15 68960334 68960795 + 1.5 NA intron (NM_001184780, intron 1 of 15) intron (NM_001184780, intron 1 of 15) 30039 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 235.5-59 chr9 30294631 30294901 + 1.5 NA Intergenic Intergenic 113688 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 257-18 chr6 47777373 47777713 + 1.5 NA Intergenic Intergenic -4496 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 231.25-17 chr18 32381080 32381419 + 1.5 NA intron (NM_001242409, intron 2 of 5) intron (NM_001242409, intron 2 of 5) 89633 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 150-69 chr7 85772703 85772857 + 1.5 NA Intergenic Intergenic 351658 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 235-9 chr13 22563515 22563776 + 1.5 NA Intergenic L1MEc|LINE|L1 334536 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 190-12 chr14 56367661 56367874 + 1.5 NA Intergenic Intergenic -146564 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 236.5-27 chr20 42557609 42558002 + 1.5 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -127678 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 310-8 chr14 47890054 47890450 + 1.5 NA Intergenic Intergenic -95238 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 225.5-25 chr2 53750874 53751084 + 1.5 NA intron (NM_145863, intron 1 of 8) intron (NM_145863, intron 1 of 8) -16804 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 216-34 chr6 26624886 26625034 + 1.5 NA Intergenic L1MC2|LINE|L1 28007 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 263.5-8 chr13 50973134 50973430 + 1.5 NA Intergenic Intergenic -62570 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 392 chr13 77448330 77448740 + 1.5 NA Intergenic Intergenic -87139 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 245.5-12 chr2 136724597 136724895 + 1.5 NA Intergenic L1PA16|LINE|L1 -40799 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 305-8 chr14 53043815 53044234 + 1.5 NA 3' UTR (NM_001160147, exon 13 of 13) 3' UTR (NM_001160147, exon 13 of 13) -92927 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 221-12 chr11 39299490 39299690 + 1.5 NA Intergenic A-rich|Low_complexity|Low_complexity 650732 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 217.5-47 chr8 97873996 97874232 + 1.5 NA intron (NM_002380, intron 1 of 18) intron (NM_002380, intron 1 of 18) 5050 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 394.25 chr22 35508048 35508381 + 1.5 NA Intergenic LTR9D|LTR|ERV1 -32280 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 211.5 chr10 23024665 23024824 + 1.5 NA intron (NM_001282745, intron 16 of 18) L1MDa|LINE|L1 -70835 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 280.5 chr1 70068057 70068488 + 1.5 NA intron (NM_001370785, intron 23 of 26) L1MD1|LINE|L1 137307 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 250-7 chr14 36106570 36106947 + 1.5 NA intron (NR_073454, intron 1 of 2) L1MEf|LINE|L1 36331 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 203.5-41 chr5 44488098 44488281 + 1.5 NA Intergenic L3|LINE|CR1 22093 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 317.5-5 chr14 65570338 65570603 + 1.5 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 99368 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 234-28 chr20 56122505 56122732 + 1.5 NA Intergenic LTR33|LTR|ERVL -117099 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 248.5-33 chr7 107820020 107820323 + 1.5 NA Intergenic MIRb|SINE|MIR -16938 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 176.5-27 chr14 51889932 51890077 + 1.5 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 28567 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 277.5-11 chr22 29867373 29867725 + 1.5 NA Intergenic Intergenic -15620 NM_153050 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 226.25-17 chr2 76618520 76618810 + 1.5 NA Intergenic AluJb|SINE|Alu -367300 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 184.5-9 chr10 56538038 56538212 + 1.5 NA Intergenic LTR16|LTR|ERVL -176852 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 256.5-40 chr8 127543277 127543556 + 1.5 NA Intergenic MIR3|SINE|MIR -61277 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 283.5-18 chr6 65501449 65501686 + 1.5 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 78237 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 294-2 chr1 186778501 186778764 + 1.5 NA Intergenic Intergenic -50268 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 127.5-101 chr5 149148992 149149096 + 1.5 NA intron (NM_001370418, intron 1 of 18) intron (NM_001370418, intron 1 of 18) 7313 NM_001301028 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 291-9 chr20 669913 670295 + 1.5 NA intron (NM_033129, intron 1 of 1) intron (NM_033129, intron 1 of 1) 5698 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 406.5-3 chr7 1802033 1802463 + 1.5 NA Intergenic L1ME3F|LINE|L1 42005 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 310-21 chr6 151488844 151489325 + 1.5 NA Intergenic (AAATG)n|Simple_repeat|Simple_repeat -4933 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 163.5-92 chr8 113656811 113656940 + 1.5 NA Intergenic Intergenic -219936 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 165.25-39 chr3 87357610 87357737 + 1.5 NA Intergenic Intergenic -81089 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 143-63 chr6 34340506 34340609 + 1.5 NA intron (NM_001202470, intron 6 of 8) intron (NM_001202470, intron 6 of 8) 52112 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 256.5-30 chr5 51516910 51517179 + 1.5 NA Intergenic Intergenic 133596 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 207-45 chr5 120609485 120609720 + 1.5 NA intron (NM_001308088, intron 1 of 3) intron (NM_001308088, intron 1 of 3) 78138 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 172-8 chr11 66625757 66625970 + 1.5 NA intron (NM_006328, intron 2 of 2) intron (NM_006328, intron 2 of 2) 9233 NM_001198836 10432 Hs.533712 NM_006328 ENSG00000239306 RBM14 COAA|PSP2|SIP|SYTIP1|TMEM137 RNA binding motif protein 14 protein-coding 202.5-31 chr3 159979506 159979694 + 1.5 NA intron (NR_108088, intron 9 of 9) L1MEg|LINE|L1 -9235 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 578.5 chr4 49154387 49155044 + 1.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 168073 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 436 chr10 65566958 65567469 + 1.5 NA Intergenic Intergenic -4212 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 124-14 chr11 115330205 115330355 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -3297 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 173-32 chr21 18286321 18286559 + 1.5 NA intron (NM_002772, intron 21 of 24) L2a|LINE|L2 40565 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 180-17 chr12 60278497 60278732 + 1.5 NA Intergenic Intergenic 589244 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 165.75-76 chr8 131012653 131012852 + 1.5 NA intron (NM_001115, intron 1 of 17) LTR16A|LTR|ERVL 28157 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 290.5-7 chr10 71365558 71366021 + 1.5 NA Intergenic Intergenic -31131 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 231.75-18 chr22 34483648 34483907 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 514139 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 192-13 chr12 64497492 64497809 + 1.5 NA exon (NM_013254, exon 19 of 21) exon (NM_013254, exon 19 of 21) 45530 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 289.5-12 chr2 98059871 98060099 + 1.5 NA Intergenic L1MB7|LINE|L1 -27182 NR_144296 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 287-13 chr3 127471080 127471329 + 1.5 NA Intergenic Intergenic 66576 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 161.25-11 chr10 84447065 84447225 + 1.5 NA intron (NM_018999, intron 6 of 10) L1ME3B|LINE|L1 21976 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 228-44 chr8 89530898 89531224 + 1.5 NA Intergenic L1MEf|LINE|L1 226650 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 246.75-5 chr11 60647824 60648024 + 1.5 NA intron (NR_026946, intron 3 of 6) intron (NR_026946, intron 3 of 6) 32173 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 142.25-44 chr3 71016062 71016295 + 1.5 NA intron (NR_146142, intron 11 of 19) intron (NR_146142, intron 11 of 19) 48746 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 233-22 chr4 71437016 71437201 + 1.5 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 98055 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 275.25-9 chr16 71400936 71401228 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 25382 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 263-20 chr4 153694535 153694817 + 1.5 NA intron (NM_003264, intron 2 of 2) L1MA3|LINE|L1 10396 NM_001318793 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 265-7 chr14 37566343 37566660 + 1.5 NA Intergenic Intergenic 28748 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 130.5-85 chr7 19747493 19747633 + 1.5 NA intron (NM_001366627, intron 1 of 4) MIRb|SINE|MIR 25218 NM_152774 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 173.25-39 chr22 39707673 39707837 + 1.5 NA Intergenic Intergenic 137002 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 170.25-19 chr14 48000667 48000883 + 1.5 NA Intergenic Intergenic -205761 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 240-2 chr1 177254481 177254671 + 1.5 NA intron (NM_021165, intron 2 of 7) Charlie1|DNA|hAT-Charlie 83618 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 246-36 chr8 88705986 88706251 + 1.5 NA Intergenic Intergenic -378635 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 195.5-53 chr21 29188983 29189256 + 1.5 NA Intergenic Intergenic -4375 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 162.75-78 chr9 32621261 32621421 + 1.5 NA Intergenic Intergenic 14328 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 234.5-18 chr17 80519847 80520021 + 1.5 NA Intergenic Intergenic -24904 NM_020761 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 318.75-3 chr11 57257451 57257800 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -20172 NM_005161 187 Hs.438311 NM_005161 ENSG00000134817 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 225-10 chr12 118359340 118359544 + 1.5 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 263 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 242-13 chr14 48886235 48886452 + 1.5 NA Intergenic Intergenic 700037 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 329.5-11 chr6 119606181 119606587 + 1.5 NA intron (NR_134600, intron 2 of 3) L2c|LINE|L2 56576 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 213.75-17 chr12 17339111 17339358 + 1.5 NA Intergenic L1MB2|LINE|L1 249844 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 176.25-21 chr15 49012097 49012270 + 1.5 NA intron (NM_001193489, intron 12 of 17) MIRc|SINE|MIR 34263 NM_001193489 9728 Hs.9997 NM_014701 ENSG00000138593 SECISBP2L SBP2L|SLAN SECIS binding protein 2 like protein-coding 184.5-32 chr17 55395221 55395376 + 1.5 NA intron (NM_012329, intron 6 of 6) intron (NM_012329, intron 6 of 6) 26537 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 298.5-12 chr18 67656327 67656667 + 1.5 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -139777 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 268.5-17 chr2 83953715 83954059 + 1.5 NA Intergenic Intergenic -336795 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 164-28 chr2 51669117 51669314 + 1.5 NA intron (NR_135237, intron 5 of 10) L1MC3|LINE|L1 636614 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 186-32 chr20 52952979 52953132 + 1.5 NA Intergenic Intergenic -19303 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 148-45 chr3 167246156 167246299 + 1.5 NA intron (NM_001199202, intron 19 of 20) intron (NM_001199202, intron 19 of 20) 134056 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 206-7 chr12 19791480 19791648 + 1.5 NA Intergenic L1M5|LINE|L1 -223121 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 280.75-8 chr22 38159972 38160315 + 1.5 NA intron (NM_001349869, intron 2 of 16) L1ME3A|LINE|L1 21687 NM_001349868 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 117-82 chr7 43856679 43856838 + 1.5 NA Intergenic Intergenic 12759 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 138.25-2 chr1 21764981 21765081 + 1.5 NA intron (NM_001350167, intron 1 of 26) intron (NM_001350167, intron 1 of 26) 18118 NM_001350167 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 166.5-103 chr8 129946642 129946801 + 1.5 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -6910 NM_001353297 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 275.25-14 chr2 36074644 36074875 + 1.5 NA Intergenic Intergenic 280811 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 299-3 chr11 21700971 21701278 + 1.5 NA Intergenic Intergenic -491961 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 138.5-8 chr1 152842961 152843100 + 1.5 NA intron (NM_001128600, intron 1 of 1) intron (NM_001128600, intron 1 of 1) 174 NM_001128600 448835 Hs.62927 NM_001128600 ENSG00000235942 LCE6A C1orf44 late cornified envelope 6A protein-coding 216.5-4 chr10 82875862 82876105 + 1.5 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -643063 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 214.5-66 chrX 101284197 101284493 + 1.5 NA intron (NM_024885, intron 3 of 12) intron (NM_024885, intron 3 of 12) 6989 NM_001168474 54457 Hs.223806 NM_024885 ENSG00000102387 TAF7L CT40|TAF2Q TATA-box binding protein associated factor 7 like protein-coding 196-34 chr5 28457879 28458081 + 1.5 NA Intergenic L2-3_Crp|LINE|L2 -170315 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 293-21 chr8 114994015 114994339 + 1.5 NA Intergenic L1P3|LINE|L1 673836 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 218-19 chr2 33494391 33494608 + 1.5 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) 17850 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 176-27 chr3 25652891 25653030 + 1.5 NA intron (NM_001330700, intron 1 of 35) L1MB2|LINE|L1 11412 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 210-23 chr3 81960307 81960478 + 1.5 NA Intergenic Intergenic -25750 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 277.5-3 chr11 131227613 131227850 + 1.5 NA Intergenic Intergenic -142884 NM_001352003 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 257.5-19 chr3 112429859 112430053 + 1.5 NA Intergenic Intergenic 69516 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 178-7 chr11 6525439 6525624 + 1.5 NA intron (NM_144666, intron 10 of 42) HAL1M8|LINE|L1 28235 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 190.75 chr1 9366823 9367064 + 1.5 NA intron (NM_025106, intron 2 of 2) intron (NM_025106, intron 2 of 2) 61973 NR_104623 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 285.5-13 chr5 50976211 50976489 + 1.5 NA Intergenic MER119|DNA|hAT-Charlie -6163 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 135-39 chr2 60635880 60636032 + 1.5 NA Intergenic Intergenic -82302 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 214.5-8 chr11 96010749 96010968 + 1.5 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -86651 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 196-10 chr11 91304171 91304377 + 1.5 NA Intergenic Intergenic -435072 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 277-24 chr7 1408413 1408736 + 1.5 NA Intergenic MIRb|SINE|MIR 50896 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 249.75-18 chr3 127130989 127131306 + 1.5 NA Intergenic Intergenic -61984 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 168.5-43 chr2 102172196 102172340 + 1.5 NA intron (NM_001320978, intron 8 of 11) intron (NM_001320978, intron 8 of 11) -14705 NM_001351448 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 138-70 chr6 148357402 148357533 + 1.5 NA intron (NM_001346506, intron 1 of 20) intron (NM_001346506, intron 1 of 20) 14629 NM_015278 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 245.5-30 chr4 150039478 150039714 + 1.5 NA Intergenic Intergenic -38849 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 122.5-18 chr12 2167928 2168068 + 1.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 55483 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 207-19 chr17 74334025 74334348 + 1.5 NA intron (NM_153209, intron 2 of 19) L1MB8|LINE|L1 7960 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 394 chr1 114930892 114931383 + 1.5 NA intron (NM_001282542, intron 23 of 30) L1M4a2|LINE|L1 76274 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 163-32 chr22 34666695 34666904 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 331117 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 207.5-32 chr2 195737396 195737572 + 1.5 NA TTS (NM_018897) TTS (NM_018897) 80258 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 210-39 chr8 95187687 95187917 + 1.5 NA Intergenic L1MD|LINE|L1 28572 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 190.5-35 chr2 65720491 65720645 + 1.5 NA Intergenic Charlie19a|DNA|hAT-Charlie -287969 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 145-15 chr13 52683871 52684002 + 1.5 NA intron (NM_001130912, intron 13 of 13) AluJb|SINE|Alu 31100 NM_001320831 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 156-11 chr10 20228051 20228230 + 1.5 NA intron (NM_032812, intron 12 of 13) L2c|LINE|L2 -323830 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 223-40 chr9 5575701 5575887 + 1.5 NA Intergenic Intergenic -53313 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 223.5-65 chr5 99196103 99196355 + 1.5 NA Intergenic SATR1|Satellite|Satellite -266515 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 126.5-77 chr4 30456203 30456322 + 1.5 NA Intergenic Intergenic -264107 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 182.75-11 chr15 61221476 61221789 + 1.5 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 7670 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 236.25-30 chr4 133642816 133643072 + 1.5 NA Intergenic Intergenic 493650 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 200.5-24 chr17 17407823 17407959 + 1.5 NA Intergenic L1MC4a|LINE|L1 -69109 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 251.75-7 chr2 143029923 143030295 + 1.5 NA intron (NM_001199241, intron 12 of 14) MIRb|SINE|MIR -99310 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 139-62 chr7 46707282 46707406 + 1.5 NA Intergenic Intergenic -10222 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 383.25-6 chr8 108690669 108691064 + 1.5 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 96728 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 247.25-22 chr3 114641944 114642201 + 1.5 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -17127 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 236-14 chr15 41666294 41666526 + 1.5 NA intron (NM_001164273, intron 1 of 23) intron (NM_001164273, intron 1 of 23) 5998 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MAX dimerization protein MGA protein-coding 261-14 chr14 67096009 67096314 + 1.5 NA intron (NM_001024218, intron 11 of 21) intron (NM_001024218, intron 11 of 21) -93279 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 179-19 chr14 31643517 31643652 + 1.5 NA intron (NM_001201573, intron 2 of 8) L1MA4|LINE|L1 65668 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 172.5-52 chr4 107592037 107592231 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie 128100 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 154.5-46 chr20 252626 252767 + 1.5 NA Intergenic L1PB4|LINE|L1 -5028 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 296.5-19 chrX 154798908 154799220 + 1.5 NA intron (NM_001166460, intron 1 of 11) intron (NM_001166460, intron 1 of 11) 6421 NM_001166461 4354 Hs.496984 NM_002436 ENSG00000130830 MPP1 AAG12|DXS552E|EMP55|MRG1|PEMP membrane palmitoylated protein 1 protein-coding 264.5-15 chr2 64795933 64796130 + 1.5 NA Intergenic LTR16D2|LTR|ERVL 67600 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 255.5-19 chr3 31483114 31483454 + 1.5 NA Intergenic L1ME1|LINE|L1 -49641 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 276-16 chr5 29471514 29471818 + 1.5 NA Intergenic MER67D|LTR|ERV1 -75690 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 216-19 chr18 2338367 2338606 + 1.5 NA Intergenic Intergenic 233019 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 256.75 chr1 15722494 15722745 + 1.5 NA intron (NM_015164, intron 7 of 19) intron (NM_015164, intron 7 of 19) -13639 NM_207348 284723 Hs.631867 NM_207348 ENSG00000162461 SLC25A34 - solute carrier family 25 member 34 protein-coding 232-3 chr11 61156610 61156802 + 1.5 NA intron (NM_017966, intron 1 of 4) intron (NM_017966, intron 1 of 4) 4720 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 132-69 chr6 157332257 157332369 + 1.5 NA Intergenic Intergenic -8054 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 165.5-75 chr6 115118403 115118521 + 1.5 NA Intergenic Intergenic 525373 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 300-17 chr5 106240723 106241013 + 1.5 NA Intergenic Intergenic 770146 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 271.5 chr11 111823670 111823914 + 1.5 NA intron (NR_147984, intron 13 of 15) MER117|DNA|hAT-Charlie 47489 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 307-4 chr17 79378736 79379018 + 1.5 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 137271 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 183.75-10 chr12 4465704 4465848 + 1.5 NA Intergenic L1MA6|LINE|L1 -20162 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 269.5-34 chr9 91454136 91454483 + 1.5 NA Intergenic Intergenic -29683 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 115.5-94 chr8 36201578 36201744 + 1.5 NA Intergenic Intergenic -491341 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 261.25-3 chr12 128031921 128032112 + 1.5 NA Intergenic LTR8|LTR|ERV1 -4850 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 196-2 chr10 8719024 8719174 + 1.5 NA Intergenic L1M2|LINE|L1 -124708 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 269-4 chr10 73071507 73071779 + 1.5 NA intron (NM_001017962, intron 4 of 14) intron (NM_001017962, intron 4 of 14) 25331 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 254.5-14 chr2 108557969 108558263 + 1.5 NA intron (NM_001193483, intron 1 of 9) intron (NM_001193483, intron 1 of 9) 23761 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 418.25-3 chr8 141833262 141833714 + 1.5 NA Intergenic L1ME2|LINE|L1 -47175 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 267.75-13 chr5 87303427 87303744 + 1.5 NA intron (NM_022650, intron 1 of 24) L1ME3A|LINE|L1 20043 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 278.25 chr1 84688525 84688828 + 1.5 NA intron (NM_014021, intron 1 of 14) intron (NM_014021, intron 1 of 14) 1785 NM_001166417 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 197.5-4 chr1 52358786 52359029 + 1.5 NA intron (NM_032449, intron 11 of 23) intron (NM_032449, intron 11 of 23) 7298 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 192-6 chr10 77507495 77507741 + 1.5 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 130190 NM_001322836 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 521.75 chr14 56589104 56589691 + 1.5 NA intron (NM_017799, intron 3 of 15) intron (NM_017799, intron 3 of 15) 9599 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 130.5-88 chr7 45522507 45522662 + 1.5 NA Intergenic Intergenic -51556 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 195-51 chr6 117922099 117922366 + 1.5 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 14968 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 195.5-51 chr20 44792526 44792788 + 1.5 NA intron (NM_001205317, intron 1 of 5) MIRb|SINE|MIR 17889 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 188-15 chr16 12660958 12661257 + 1.5 NA 3' UTR (NM_001099455, exon 3 of 3) 3' UTR (NM_001099455, exon 3 of 3) -59214 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 248.5-12 chr2 36372638 36372956 + 1.5 NA intron (NM_016441, intron 1 of 16) intron (NM_016441, intron 1 of 16) 17019 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 145.5-53 chr2 191236648 191236759 + 1.5 NA Intergenic Intergenic -8701 NM_001330238 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 279-18 chr4 93203211 93203425 + 1.5 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -625435 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 172.5-55 chr5 5154258 5154462 + 1.5 NA intron (NM_139056, intron 3 of 22) intron (NM_139056, intron 3 of 22) 14030 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 131-49 chr4 148342957 148343129 + 1.5 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 99371 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 195-66 chrX 102644426 102644664 + 1.5 NA intron (NR_146584, intron 4 of 18) L1MC1|LINE|L1 -6821 NM_001099411 9737 Hs.729265 NM_014710 ENSG00000198932 GPRASP1 GASP|GASP-1|GASP1 G protein-coupled receptor associated sorting protein 1 protein-coding 368-9 chr7 6613980 6614430 + 1.5 NA Intergenic AluSp|SINE|Alu -1405 NM_001353546 54753 Hs.592170 NM_017560 ENSG00000236609 ZNF853 - zinc finger protein 853 protein-coding 266.25-18 chr4 143510114 143510397 + 1.5 NA Intergenic MIRb|SINE|MIR -3447 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 149.25-51 chr5 36930744 36930906 + 1.5 NA intron (NM_015384, intron 1 of 45) L1ME1|LINE|L1 54056 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 257.25-18 chr4 158799876 158800127 + 1.5 NA intron (NM_001346043, intron 1 of 15) intron (NM_001346043, intron 1 of 15) -5838 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 183-21 chr14 53819906 53820059 + 1.5 NA Intergenic Intergenic 128502 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 375.5-3 chr14 60180974 60181296 + 1.5 NA Intergenic MIR|SINE|MIR -11271 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 217.5-41 chr7 23762746 23762959 + 1.5 NA exon (NM_001260504, exon 11 of 24) exon (NM_001260504, exon 11 of 24) 52633 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 257.5-12 chr15 97941192 97941471 + 1.5 NA Intergenic L2c|LINE|L2 -19372 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 386.5 chr1 187106332 187106627 + 1.5 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 13637 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 227-13 chr15 70329774 70329978 + 1.5 NA Intergenic Intergenic 176052 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 121.5-44 chr16 64115938 64116047 + 1.5 NA Intergenic L1PA5|LINE|L1 1006071 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 210-37 chr8 21021172 21021482 + 1.5 NA Intergenic L1MA8|LINE|L1 47341 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 230.5-26 chr19 28694203 28694388 + 1.5 NA intron (NR_110759, intron 5 of 9) L1MD1|LINE|L1 33399 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 427.75 chr2 72709249 72709693 + 1.5 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 116562 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 201.25-29 chr4 113667977 113668241 + 1.5 NA intron (NM_001221, intron 2 of 18) intron (NM_001221, intron 2 of 18) 93629 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 139-57 chr6 116807855 116808055 + 1.5 NA intron (NM_148963, intron 2 of 5) intron (NM_148963, intron 2 of 5) 21102 NM_001286354 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 203-3 chr1 208390948 208391171 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -146675 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 330.5-2 chr12 5619292 5619611 + 1.5 NA intron (NM_001278596, intron 17 of 25) intron (NM_001278596, intron 17 of 25) 125319 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 237.75-17 chr16 72940372 72940651 + 1.5 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 107617 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 218.25-43 chr7 2848581 2848818 + 1.5 NA Intergenic AluSx|SINE|Alu -4391 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 342-11 chr8 48865901 48866170 + 1.5 NA Intergenic Intergenic 55394 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 249-7 chr13 51208902 51209077 + 1.5 NA Intergenic Intergenic -13345 NM_001330522 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 256.5-26 chr21 8993987 8994180 + 1.5 NA Intergenic Intergenic 6466 NR_162105 113218501 NR_162105 MIR10396A - microRNA 10396a ncRNA 157.5-74 chr4 32875482 32875608 + 1.5 NA Intergenic Intergenic 524507 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 236-35 chr7 145489287 145489571 + 1.5 NA Intergenic L1PA15|LINE|L1 -653376 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 278-15 chr21 19406617 19406841 + 1.5 NA Intergenic Intergenic 493026 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 245-14 chr2 70833329 70833537 + 1.5 NA intron (NM_015717, intron 3 of 5) intron (NM_015717, intron 3 of 5) 2383 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 165-40 chr4 47543155 47543323 + 1.5 NA intron (NM_020453, intron 9 of 22) MER44A|DNA|TcMar-Tigger 57964 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 165-56 chr9 83546250 83546492 + 1.5 NA Intergenic AluSz|SINE|Alu -7970 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 236.25-43 chr8 120007846 120008099 + 1.5 NA intron (NM_022783, intron 7 of 8) Tigger16a|DNA|TcMar-Tigger -117130 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 157.5-88 chr6 48376955 48377101 + 1.5 NA Intergenic Intergenic -308339 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 196.5-34 chr17 49728366 49728621 + 1.5 NA intron (NM_030802, intron 2 of 7) intron (NM_030802, intron 2 of 7) -20529 NM_001278784 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 233-9 chr11 13205251 13205551 + 1.5 NA Intergenic Intergenic -71251 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 330-9 chr5 16549584 16549823 + 1.5 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -40705 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 229.5-24 chr18 13328386 13328619 + 1.5 NA intron (NM_181482, intron 2 of 5) MER72|LTR|ERV1 50397 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 269.75-11 chr21 44797133 44797432 + 1.5 NA intron (NM_003343, intron 1 of 5) intron (NM_003343, intron 1 of 5) 4538 NM_001202489 7327 Hs.529420 NM_003343 ENSG00000184787 UBE2G2 UBC7 ubiquitin conjugating enzyme E2 G2 protein-coding 234.25-3 chr1 220462325 220462673 + 1.5 NA Intergenic Intergenic -65637 NM_001286129 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 123.75 chr1 2021410 2021556 + 1.5 NA intron (NM_000815, intron 1 of 8) intron (NM_000815, intron 1 of 8) 2138 NM_000815 2563 Hs.113882 NM_000815 ENSG00000187730 GABRD EIG10|EJM7|GEFSP5 gamma-aminobutyric acid type A receptor delta subunit protein-coding 210-24 chr4 30521126 30521355 + 1.5 NA Intergenic L1MEd|LINE|L1 -199129 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 173-19 chr14 74666475 74666626 + 1.5 NA intron (NM_001039479, intron 17 of 19) L2a|LINE|L2 46530 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 301 chr1 67702480 67702903 + 1.5 NA 3' UTR (NM_018841, exon 4 of 4) 3' UTR (NM_018841, exon 4 of 4) 17490 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 141-59 chr5 4822202 4822379 + 1.5 NA Intergenic L1MB3|LINE|L1 48809 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 214.5-48 chr4 156856884 156857145 + 1.5 NA intron (NM_016205, intron 1 of 5) intron (NM_016205, intron 1 of 5) 114785 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 245-2 chr1 108844206 108844518 + 1.5 NA intron (NM_152763, intron 5 of 15) AluSz|SINE|Alu 12732 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 174.5-84 chr8 137639115 137639339 + 1.5 NA Intergenic Intergenic -225639 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 183.25-22 chr2 58147892 58148189 + 1.5 NA intron (NM_001130482, intron 12 of 12) L1ME2|LINE|L1 93340 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 232.25-5 chr11 14926561 14926806 + 1.5 NA Intergenic Intergenic -34478 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 276-18 chr7 92031114 92031500 + 1.5 NA intron (NM_147185, intron 15 of 49) intron (NM_147185, intron 15 of 49) 90432 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 195-21 chr15 63388235 63388418 + 1.5 NA Intergenic MIR|SINE|MIR -1904 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 233-7 chr10 88505160 88505380 + 1.5 NA intron (NM_018363, intron 4 of 6) L1MC5|LINE|L1 78048 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 162.75-64 chr6 67463689 67463801 + 1.5 NA Intergenic Intergenic -591606 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 325-6 chr2 117622378 117622719 + 1.5 NA Intergenic AluJo|SINE|Alu -192143 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 229-4 chr1 185605805 185606026 + 1.5 NA intron (NR_110793, intron 2 of 3) MLT1A1|LTR|ERVL-MaLR 22573 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 361.5-2 chr13 41380739 41381029 + 1.5 NA Intergenic L1MA10|LINE|L1 -61680 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 169.25-6 chr10 41882531 41882738 + 1.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 485411 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 170.5-27 chr14 75911478 75911662 + 1.5 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 70425 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 216-25 chr2 217970746 217970954 + 1.5 NA Intergenic L1MB8|LINE|L1 -7857 NR_135524 105373878 Hs.630709 NR_135524 ENSG00000223923 LOC105373878 - uncharacterized LOC105373878 ncRNA 138-3 chr1 113685663 113685767 + 1.5 NA 3' UTR (NM_152900, exon 21 of 21) 3' UTR (NM_152900, exon 21 of 21) 73440 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 158.25-65 chr8 84924861 84925037 + 1.5 NA Intergenic Intergenic -182289 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 134-5 chr1 79564869 79565029 + 1.5 NA Intergenic Intergenic -558219 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 123.75-104 chr8 69357590 69357695 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 90602 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 228-45 chr8 104550839 104551050 + 1.5 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 38080 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 150.75-64 chr6 167457393 167457593 + 1.5 NA Intergenic Intergenic 15297 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 152.25-24 chr15 57232793 57232911 + 1.5 NA exon (NM_001322151, exon 11 of 21) exon (NM_001322151, exon 11 of 21) 13422 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 204-20 chr2 15565675 15566020 + 1.5 NA Intergenic Intergenic -4513 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 240.5-9 chr10 56551238 56551584 + 1.5 NA Intergenic Intergenic -190138 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 157.5-31 chr14 82098537 82098670 + 1.5 NA Intergenic Intergenic -355465 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 256.5-5 chr10 91016422 91016660 + 1.5 NA Intergenic L1ME4b|LINE|L1 -16625 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 258 chr1 13835814 13836104 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 86544 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 184.5-34 chr18 32281093 32281285 + 1.5 NA intron (NM_001242409, intron 4 of 5) MIRb|SINE|MIR 91150 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 263.5-31 chr7 106510733 106511093 + 1.5 NA Intergenic Intergenic 150245 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 180-70 chr9 23377130 23377365 + 1.5 NA Intergenic Intergenic 295152 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 254.25-11 chr2 174174675 174174966 + 1.5 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 73712 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 138.75-19 chr14 69981965 69982223 + 1.5 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 3961 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 147-63 chr5 27942031 27942213 + 1.5 NA Intergenic Intergenic 345543 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 195.75-7 chr10 119220851 119221185 + 1.5 NA intron (NM_005308, intron 1 of 15) AluSz6|SINE|Alu 13447 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 299.5-4 chr10 103523496 103523827 + 1.5 NA intron (NM_004210, intron 1 of 5) L1MA5|LINE|L1 -6219 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 121.75-79 chr7 8082428 8082642 + 1.5 NA intron (NM_138426, intron 6 of 7) intron (NM_138426, intron 6 of 7) 113739 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 321.5-10 chr6 148665345 148665675 + 1.5 NA Intergenic L1MA4|LINE|L1 -81520 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 123-19 chr14 50935008 50935111 + 1.5 NA intron (NM_002863, intron 3 of 19) intron (NM_002863, intron 3 of 19) 9424 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 248.75-19 chr9 127234200 127234391 + 1.5 NA Intergenic Intergenic -29367 NM_001286779 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 162-19 chr19 30643009 30643159 + 1.5 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 270700 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 494 chr13 47228455 47228906 + 1.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -331604 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 332.5-8 chr18 30244939 30245160 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -53861 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 242.25-6 chr14 76570374 76570626 + 1.5 NA Intergenic AluSx1|SINE|Alu -190968 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 168.5-23 chr14 51363278 51363556 + 1.5 NA intron (NR_038358, intron 4 of 4) L2a|LINE|L2 30024 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 178-37 chr3 187493658 187493822 + 1.5 NA Intergenic L1PB2|LINE|L1 46694 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 215.25-9 chr14 55009536 55009777 + 1.5 NA intron (NM_007086, intron 4 of 25) AluSq2|SINE|Alu 17443 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 199-16 chr15 61756347 61756556 + 1.5 NA Intergenic Intergenic 26533 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 203-31 chr6 72967313 72967454 + 1.5 NA TTS (NR_036244) TTS (NR_036244) 370 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 281.5-11 chr3 87860148 87860455 + 1.5 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) 67595 NM_001322209 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 226-17 chr20 1447315 1447535 + 1.5 NA intron (NM_018839, intron 6 of 7) MER30|DNA|hAT-Charlie 20267 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 488-3 chr6 140996877 140997496 + 1.5 NA Intergenic L1ME3A|LINE|L1 313372 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 180-63 chr7 39112272 39112483 + 1.5 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -98810 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 142-14 chr12 17913023 17913191 + 1.5 NA Intergenic Intergenic 177086 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 251-9 chr12 8620066 8620258 + 1.5 NA Intergenic L1M3|LINE|L1 -7303 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 257-3 chr10 27142082 27142301 + 1.5 NA intron (NM_001253866, intron 3 of 17) intron (NM_001253866, intron 3 of 17) 12193 NM_014263 10730 Hs.74647 NM_014263 ENSG00000136758 YME1L1 FTSH|MEG4|OPA11|PAMP|YME1L YME1 like 1 ATPase protein-coding 201.5-45 chr5 28023928 28024124 + 1.5 NA Intergenic Intergenic 263639 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 183-65 chr7 52799585 52799784 + 1.5 NA Intergenic Intergenic -235949 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 325.75-9 chr7 17265205 17265467 + 1.5 NA Intergenic L1M2|LINE|L1 -33316 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 168-15 chr10 66393270 66393413 + 1.5 NA intron (NM_001127384, intron 11 of 17) L1MC2|LINE|L1 -532695 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 176-35 chr5 65447425 65447554 + 1.5 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 34431 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 186-44 chr5 152702066 152702264 + 1.5 NA intron (NR_109877, intron 3 of 4) L2c|LINE|L2 270184 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 146-9 chr11 88268231 88268357 + 1.5 NA Intergenic L1MA3|LINE|L1 69442 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 313.75-11 chr8 138508321 138508672 + 1.5 NA Intergenic L1ME3D|LINE|L1 -10766 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 141.75-52 chr22 27852935 27853076 + 1.5 NA 3' UTR (NM_001284277, exon 11 of 11) 3' UTR (NM_001284277, exon 11 of 11) -51249 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 375-6 chr7 38759002 38759448 + 1.5 NA intron (NM_014396, intron 17 of 28) MER21B|LTR|ERVL -72136 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 236.5-39 chr4_GL000008v2_random 3354 3568 + 1.5 NA Intergenic Intergenic 174710 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 151.75-5 chr1 185259700 185259828 + 1.5 NA intron (NM_017673, intron 16 of 18) intron (NM_017673, intron 16 of 18) 57479 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 196.25-27 chr18 59415938 59416135 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -56771 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 171-61 chr8 131789793 131790025 + 1.5 NA Intergenic Intergenic -114184 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 205-6 chr10 36425666 36425888 + 1.5 NA Intergenic Intergenic 647475 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 234-27 chr20 46604559 46604801 + 1.5 NA intron (NM_001193340, intron 4 of 12) intron (NM_001193340, intron 4 of 12) 46779 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 292.5-19 chr9 106857745 106858113 + 1.5 NA Intergenic Intergenic -5237 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 240-23 chr7 23344404 23344652 + 1.5 NA intron (NM_006547, intron 8 of 14) intron (NM_006547, intron 8 of 14) 45189 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 246-6 chr12 131613378 131613619 + 1.5 NA Intergenic LTR38A1|LTR|ERV1 34623 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 227.25-32 chr6 62909436 62909615 + 1.5 NA Intergenic L1MA2|LINE|L1 410452 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 211-2 chr1 173757008 173757232 + 1.5 NA exon (NM_014458, exon 7 of 12) exon (NM_014458, exon 7 of 12) 42139 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 173-54 chr8 119720613 119720774 + 1.5 NA Intergenic Intergenic -47303 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 181.25-55 chr8 24248154 24248338 + 1.5 NA Intergenic Intergenic -45794 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 114.5-3 chr1 64632826 64632999 + 1.5 NA intron (NM_020925, intron 6 of 26) Tigger5b|DNA|TcMar-Tigger 53065 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 224.5-18 chr18 6498074 6498242 + 1.5 NA Intergenic MER66B|LTR|ERV1 -13258 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 316.75-5 chr4 60897846 60898272 + 1.5 NA Intergenic Intergenic -24560 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 292.5-16 chr7 42132543 42133019 + 1.5 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 104428 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 279.25-3 chr10 11617456 11617835 + 1.5 NA Intergenic MIR|SINE|MIR -5856 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 125-6 chr1 101927511 101927612 + 1.5 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 55549 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 129.25-65 chr6 65360079 65360194 + 1.5 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 58718 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 269.5-8 chr11 57428323 57428654 + 1.5 NA promoter-TSS (NM_017611) promoter-TSS (NM_017611) -908 NM_017611 29015 Hs.99962 NM_014096 ENSG00000134802 SLC43A3 EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43 member 3 protein-coding 284-10 chr2 96154278 96154484 + 1.5 NA Intergenic Intergenic -8941 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 147.5-47 chr2 72762718 72762886 + 1.5 NA intron (NR_135774, intron 1 of 19) L1MEc|LINE|L1 63231 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 134-72 chr7 97440655 97440884 + 1.5 NA Intergenic Intergenic -291317 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 159.75-36 chr3 81841157 81841308 + 1.5 NA Intergenic Intergenic -79587 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 356.75-4 chr8 91186560 91187032 + 1.5 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -18689 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 259.5-5 chr10 33741101 33741319 + 1.5 NA Intergenic L1MA8|LINE|L1 31470 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 240.75-23 chr22 26569376 26569672 + 1.5 NA intron (NM_001362923, intron 1 of 7) intron (NM_001362923, intron 1 of 7) -4183 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 184.5-43 chr2 112321410 112321572 + 1.5 NA intron (NM_198581, intron 7 of 11) intron (NM_198581, intron 7 of 11) 45894 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 312.25-11 chr6 144231671 144231964 + 1.5 NA Intergenic Intergenic -59920 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 198.5-7 chr10 85954448 85954688 + 1.5 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 310220 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 266-12 chr2 72123613 72123929 + 1.5 NA Intergenic FLAM_A|SINE|Alu 24091 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 221 chr1 11718388 11718716 + 1.5 NA intron (NM_198545, intron 6 of 6) AluJr|SINE|Alu -17533 NM_001040194 57085 Hs.464438 NM_020350 ENSG00000177674 AGTRAP ATRAP angiotensin II receptor associated protein protein-coding 290.75-7 chr4 16035302 16035529 + 1.5 NA intron (NM_001371408, intron 3 of 24) intron (NM_001371408, intron 3 of 24) 40703 NM_001145851 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 145.5-78 chr5 147724713 147724891 + 1.5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 57926 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 173.5-32 chr16 46868066 46868257 + 1.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -16201 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 256.5-36 chr6 55424256 55424479 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 96898 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 370.5 chr10 102345121 102345502 + 1.5 NA intron (NM_001199378, intron 4 of 39) intron (NM_001199378, intron 4 of 39) -48799 NM_001288724 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 176.25-41 chr22 22010958 22011107 + 1.5 NA intron (NR_135291, intron 4 of 6) L1MEh|LINE|L1 -28245 NM_001282112 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 240-26 chr8 124705496 124705753 + 1.5 NA intron (NM_001282971, intron 1 of 14) HAL1b|LINE|L1 22849 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 259.5-25 chr7 15130541 15130865 + 1.5 NA Intergenic Intergenic -155845 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 344.25-3 chr2 9014083 9014590 + 1.5 NA Intergenic Intergenic -10652 NM_001321266 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 253.75-10 chr17 52620086 52620268 + 1.5 NA Intergenic AluSc8|SINE|Alu 229655 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 407.5-2 chr1 220328947 220329537 + 1.5 NA Intergenic MER63D|DNA|hAT-Blackjack -56789 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 211-20 chr3 3347772 3347975 + 1.5 NA Intergenic Intergenic -168156 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 140.5-31 chr16 20768052 20768211 + 1.5 NA intron (NM_005622, intron 1 of 13) MIR|SINE|MIR 4117 NM_005622 6296 Hs.706754 NM_005622 ENSG00000005187 ACSM3 SA|SAH acyl-CoA synthetase medium chain family member 3 protein-coding 113-93 chr7 41514864 41514955 + 1.5 NA Intergenic L1MA6|LINE|L1 -179010 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 199.75-43 chr9 12985834 12986096 + 1.5 NA Intergenic Intergenic -13332 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 158-13 chr12 12047534 12047656 + 1.5 NA Intergenic Intergenic -2266 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 195-59 chr8 107909087 107909239 + 1.5 NA intron (NM_001282863, intron 4 of 4) MIR3|SINE|MIR 172776 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 134-74 chr8 84373028 84373228 + 1.5 NA intron (NM_001354319, intron 2 of 8) L1PREC2|LINE|L1 -42356 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 293-11 chr18 56000058 56000365 + 1.5 NA Intergenic L1MB7|LINE|L1 -42067 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 351-2 chr10 123485850 123486333 + 1.5 NA Intergenic MIRb|SINE|MIR -180264 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 260.75-8 chr2 14939769 14939976 + 1.5 NA Intergenic Intergenic 307155 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 242.25-12 chr17 39037036 39037251 + 1.5 NA intron (NR_033753, intron 2 of 4) Charlie5|DNA|hAT-Charlie 7237 NR_033753 342666 Hs.129645 NM_198502 ENSG00000214553 LRRC37A11P LRRC37F leucine rich repeat containing 37 member A11, pseudogene pseudo 205-10 chr12 120268538 120268746 + 1.5 NA Intergenic Intergenic -2871 NM_001243756 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 231-2 chr1 92841971 92842263 + 1.5 NA TTS (NR_146333) TTS (NR_146333) 1398 NR_002444 26782 Hs.180946 NR_002444 ENSG00000207523 SNORA66 RNU66|U66 small nucleolar RNA, H/ACA box 66 snoRNA 139.5-67 chr4 40760074 40760204 + 1.5 NA intron (NM_024677, intron 2 of 11) intron (NM_024677, intron 2 of 11) 10184 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 186.5-55 chr8 84034396 84034673 + 1.5 NA Intergenic Intergenic -148253 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 232.25-7 chr12 106541981 106542328 + 1.5 NA intron (NR_040246, intron 1 of 3) MSTB-int|LTR|ERVL-MaLR -40753 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 282.75-12 chr5 122180863 122181188 + 1.5 NA intron (NM_001195535, intron 2 of 2) intron (NM_001195535, intron 2 of 2) 20849 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 206.5-28 chr2 119934402 119934698 + 1.5 NA intron (NM_002830, intron 14 of 26) MIR3|SINE|MIR -78527 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 226-31 chr7 86757453 86757701 + 1.5 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 113663 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 226.5-42 chr5 111938297 111938592 + 1.5 NA intron (NR_046678, intron 1 of 3) intron (NR_046678, intron 1 of 3) 25936 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 228.5-30 chr5 53092971 53093275 + 1.5 NA non-coding (NR_073107, exon 29 of 29) non-coding (NR_073107, exon 29 of 29) 16634 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 187.5-55 chr3 182072300 182072506 + 1.5 NA Intergenic L1MA4|LINE|L1 120039 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 235.75-17 chr3 41682716 41683035 + 1.5 NA intron (NR_136342, intron 25 of 34) intron (NR_136342, intron 25 of 34) 279228 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 162-40 chr4 94568277 94568470 + 1.5 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 116431 NM_001011513 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 181.5-68 chr7 45138215 45138503 + 1.5 NA Intergenic AluSq2|SINE|Alu -19432 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 318.5-17 chr8 2903259 2903649 + 1.5 NA Intergenic L1MB7|LINE|L1 -175003 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 207.75-9 chr11 70320574 70320737 + 1.5 NA intron (NR_045286, intron 2 of 28) AluJb|SINE|Alu 36700 NR_031624 100313770 NR_031624 ENSG00000221333 MIR548K MIRN548K microRNA 548k ncRNA 370.5-6 chr2 189538131 189538515 + 1.5 NA Intergenic Intergenic 42488 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 253.5-31 chr4 44834261 44834582 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -107787 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 184.5-21 chr12 47647219 47647357 + 1.5 NA Intergenic Intergenic 58742 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 228.75-29 chr22_KI270878v1_alt 163191 163413 + 1.5 NA Intergenic Intergenic -30363 NR_110539 388882 Hs.542766 NR_110539 ENSG00000178248 FAM230I LINC01658 family with sequence similarity 230 member I ncRNA 195.5-19 chr12 22208784 22209074 + 1.5 NA intron (NM_003034, intron 4 of 4) L1ME3G|LINE|L1 125785 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 206-16 chr2 59635155 59635627 + 1.5 NA Intergenic Intergenic 417683 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 276.75-16 chr4 90199287 90199563 + 1.5 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -35606 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 262.5-20 chr2 116157098 116157422 + 1.5 NA Intergenic MER41E|LTR|ERV1 813445 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 262-12 chr13 113869677 113870001 + 1.5 NA Intergenic L1ME1|LINE|L1 5662 NR_044993 100506394 Hs.132168 NR_044993 ENSG00000272695 GAS6-DT GAS6-AS2 GAS6 divergent transcript ncRNA 406.25-3 chr5 24784523 24785156 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 55744 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 205.5-58 chr8 64674779 64674991 + 1.5 NA intron (NM_004820, intron 1 of 5) Tigger15a|DNA|TcMar-Tigger -92993 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 130.5-77 chr6 39922691 39922837 + 1.5 NA intron (NR_033233, intron 2 of 8) intron (NR_033233, intron 2 of 8) 4952 NM_005943 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 210.5-11 chr11 126502428 126502604 + 1.5 NA intron (NM_001301097, intron 4 of 15) intron (NM_001301097, intron 4 of 15) 96429 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 166.5-99 chr8 87998919 87999039 + 1.5 NA Intergenic Intergenic -124964 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 310-14 chr22 37953486 37953802 + 1.5 NA promoter-TSS (NM_021974) promoter-TSS (NM_021974) -19 NM_001363825 5435 Hs.436578 NM_021974 ENSG00000100142 POLR2F HRBP14.4|POLRF|RPABC14.4|RPABC2|RPB14.4|RPB6|RPC15 RNA polymerase II subunit F protein-coding 138.5-31 chr14 37608613 37608789 + 1.5 NA intron (NM_001310135, intron 2 of 32) intron (NM_001310135, intron 2 of 32) 13072 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 155.25 chr1 10445566 10445786 + 1.5 NA intron (NM_001270517, intron 5 of 5) MIRc|SINE|MIR -4355 NM_001302 1325 Hs.412311 NM_001302 ENSG00000241563 CORT CST-14|CST-17|CST-29 cortistatin protein-coding 318-7 chr14 72561580 72561937 + 1.5 NA intron (NR_135235, intron 18 of 18) intron (NR_135235, intron 18 of 18) 44938 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 370.5-5 chr19 45370123 45370440 + 1.5 NA 5' UTR (NM_001130867, exon 1 of 12) 5' UTR (NM_001130867, exon 1 of 12) 306 NM_000400 2068 Hs.487294 NM_000400 ENSG00000104884 ERCC2 COFS2|EM9|TFIIH|TTD|TTD1|XPD ERCC excision repair 2, TFIIH core complex helicase subunit protein-coding 176.5-83 chr8 78921871 78922035 + 1.5 NA Intergenic Intergenic 84424 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 204-24 chr2 198619018 198619166 + 1.5 NA Intergenic MIR|SINE|MIR -243995 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 209.5-33 chr4 33720333 33720574 + 1.5 NA Intergenic Intergenic 319440 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 206.5-3 chr1 236201187 236201344 + 1.5 NA intron (NM_003272, intron 5 of 6) L1PB1|LINE|L1 58726 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 161-49 chr4 30893465 30893659 + 1.5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 173193 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 260.5-29 chr6 149340000 149340349 + 1.5 NA intron (NM_015093, intron 2 of 8) intron (NM_015093, intron 2 of 8) 21874 NM_015093 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 197-14 chr14 68915992 68916207 + 1.5 NA intron (NM_001102, intron 3 of 20) intron (NM_001102, intron 3 of 20) 63203 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 180-59 chr6 64558741 64558934 + 1.5 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -742581 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 221.25-28 chr5 22630918 22631183 + 1.5 NA intron (NM_004061, intron 1 of 14) L1PA15|LINE|L1 222294 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 190-42 chr5 171411450 171411593 + 1.5 NA TTS (NR_149149) TTS (NR_149149) -8126 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 198-20 chr17 55973096 55973307 + 1.5 NA Intergenic Intergenic -180274 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 223.5-38 chr2 163025839 163026098 + 1.5 NA Intergenic (TTTATTT)n|Simple_repeat|Simple_repeat -187201 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 326.5-4 chr18 1423861 1424298 + 1.5 NA Intergenic Intergenic -64450 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 244.5-8 chr12 67616654 67616879 + 1.5 NA Intergenic Intergenic -31979 NM_003583 8445 Hs.173135 NM_003583 ENSG00000127334 DYRK2 - dual specificity tyrosine phosphorylation regulated kinase 2 protein-coding 131.25-87 chr8 82045327 82045487 + 1.5 NA Intergenic Intergenic -203121 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 168.75-27 chr2 116679947 116680131 + 1.5 NA Intergenic L2b|LINE|L2 -1134652 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 255.75-26 chr8 125799825 125800114 + 1.5 NA Intergenic Intergenic 151228 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 247-34 chr8 36291741 36291996 + 1.5 NA Intergenic Intergenic -492506 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 163.5-22 chr12 30955047 30955207 + 1.5 NA intron (NM_001370302, intron 2 of 7) MER110A|LTR|ERV1 28223 NM_001370301 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 195-47 chr5 110354340 110354518 + 1.5 NA Intergenic Intergenic 159486 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 147.75-75 chr7 38498626 38498767 + 1.5 NA intron (NM_001635, intron 3 of 20) intron (NM_001635, intron 3 of 20) 132677 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 203-6 chr11 35263965 35264184 + 1.5 NA intron (NM_001252652, intron 11 of 11) intron (NM_001252652, intron 11 of 11) 101124 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 133.5-41 chr16 80694460 80694565 + 1.5 NA intron (NM_152342, intron 1 of 6) L1MD3|LINE|L1 110086 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 205.5-16 chr15 64096661 64096948 + 1.5 NA intron (NM_003099, intron 1 of 14) intron (NM_003099, intron 1 of 14) 822 NM_148955 6642 Hs.188634 NM_003099 ENSG00000028528 SNX1 HsT17379|VPS5 sorting nexin 1 protein-coding 356.5-2 chr10 88426362 88426740 + 1.5 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 156767 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 220-37 chrX 86475810 86476073 + 1.5 NA intron (NM_001139515, intron 2 of 11) L1MA2|LINE|L1 212973 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 299.5-14 chr8 120170796 120171142 + 1.5 NA intron (NM_021110, intron 5 of 47) L1MEd|LINE|L1 45867 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 135.25-32 chr16 66647410 66647598 + 1.5 NA intron (NM_181521, intron 1 of 3) intron (NM_181521, intron 1 of 3) 42773 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 144-29 chr17 62947338 62947479 + 1.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 3193 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 185-26 chr22 27525776 27525942 + 1.5 NA Intergenic Intergenic 215208 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 204.5-59 chr7 47025456 47025707 + 1.5 NA Intergenic Intergenic -328459 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 277.5-13 chr4 23565406 23565619 + 1.5 NA Intergenic AluJb|SINE|Alu 315780 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 283.5-26 chr8 47607681 47607916 + 1.5 NA intron (NM_001080394, intron 10 of 19) intron (NM_001080394, intron 10 of 19) -46290 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 221.25-27 chr4 160296506 160296740 + 1.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -518839 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 227.5-32 chr22 27390669 27390863 + 1.5 NA Intergenic Intergenic 80115 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 113-86 chr6 40689805 40689950 + 1.5 NA Intergenic Intergenic -102513 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 136-9 chr11 41134567 41134860 + 1.5 NA intron (NM_001258419, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 324923 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 294.75-16 chr7 7419855 7420343 + 1.5 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 115774 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 226.5-51 chr8 114630689 114630969 + 1.5 NA Intergenic Intergenic 1037184 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 193.5-15 chr11 106432490 106432745 + 1.5 NA Intergenic L1MEd|LINE|L1 181210 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 191.5-11 chr11 77464038 77464229 + 1.5 NA intron (NM_001128620, intron 1 of 15) MER33|DNA|hAT-Charlie 9930 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 254.25-21 chr5 98888709 98889095 + 1.5 NA intron (NM_001364113, intron 16 of 36) intron (NM_001364113, intron 16 of 36) 37632 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 142.5-51 chr3 54292185 54292339 + 1.5 NA intron (NM_018398, intron 2 of 37) L1MB4|LINE|L1 169710 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 285.25-23 chr8 54175965 54176410 + 1.5 NA Intergenic Intergenic 40946 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 225.25-15 chr2 235223631 235223902 + 1.5 NA Intergenic L1ME3G|LINE|L1 196031 NM_001371306 247.75-17 chr22 26259254 26259441 + 1.5 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 89873 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 204-28 chr3 149678164 149678457 + 1.5 NA intron (NM_001348362, intron 3 of 9) Charlie17b|DNA|hAT-Charlie 20100 NR_040250 100128025 Hs.594912 NR_040250 ENSG00000241313 WWTR1-AS1 - WWTR1 antisense RNA 1 ncRNA 286.5-11 chr21 42586705 42587038 + 1.5 NA Intergenic Intergenic 28224 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 121.5-4 chr1 80030032 80030114 + 1.5 NA Intergenic Intergenic -505682 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 336.5-4 chr20 56923940 56924306 + 1.5 NA Intergenic Intergenic -289573 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 175.5-56 chr4 54291423 54291864 + 1.5 NA intron (NM_001347829, intron 22 of 22) L1PA15|LINE|L1 -41249 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 281.5-17 chr7 81408047 81408355 + 1.5 NA Intergenic Intergenic 153618 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 179-43 chr3 132645527 132645686 + 1.5 NA intron (NM_032169, intron 1 of 19) HAL1ME|LINE|L1 -8840 NM_198329 79876 Hs.170737 NM_024818 ENSG00000081307 UBA5 EIEE44|SCAR24|THIFP1|UBE1DC1 ubiquitin like modifier activating enzyme 5 protein-coding 185.25-9 chr11 12323992 12324190 + 1.5 NA intron (NM_032867, intron 5 of 8) intron (NM_032867, intron 5 of 8) 37191 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 118.5-85 chr5 60840845 60840971 + 1.5 NA intron (NM_024930, intron 1 of 8) L1ME4c|LINE|L1 3361 NM_024930 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 268.25-16 chr6 107117185 107117472 + 1.5 NA Intergenic Intergenic -1813 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 262.75-11 chr2 13306902 13307371 + 1.5 NA Intergenic Intergenic -300123 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 195-27 chr2 45938388 45938598 + 1.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 286818 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 245.25-14 chr2 30169118 30169386 + 1.5 NA Intergenic Intergenic -18182 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 239.5-22 chr5 28193999 28194267 + 1.5 NA Intergenic MIR|SINE|MIR 93532 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 193.5-39 chr3 15998326 15998509 + 1.5 NA Intergenic Intergenic 124646 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 353-6 chr9 113818975 113819354 + 1.5 NA Intergenic L1ME1|LINE|L1 -57118 NM_133374 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 265-4 chr12 23343297 23343576 + 1.5 NA Intergenic Intergenic 167800 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 198-11 chr12 1612533 1612747 + 1.5 NA Intergenic L1M5|LINE|L1 -4416 NM_030775 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 138-9 chr10 88912840 88913025 + 1.5 NA intron (NM_020799, intron 5 of 10) intron (NM_020799, intron 5 of 10) -19752 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 283.25-4 chr11 29201258 29201568 + 1.5 NA Intergenic Intergenic -393000 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 127.5-102 chr5 174487560 174487682 + 1.5 NA intron (NR_125806, intron 2 of 5) L1MC3|LINE|L1 151267 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 209.25-35 chr5 132890982 132891255 + 1.5 NA intron (NM_014423, intron 13 of 20) intron (NM_014423, intron 13 of 20) 17450 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 206-39 chr9 84137487 84137653 + 1.5 NA Intergenic MER5A1|DNA|hAT-Charlie 74127 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 201.5-44 chr5 8247699 8247887 + 1.5 NA Intergenic Intergenic 209771 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 260-27 chr4 127621071 127621426 + 1.5 NA Intergenic Intergenic -11709 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 255.75-21 chr5 30003125 30003414 + 1.5 NA Intergenic L1MCa|LINE|L1 122709 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 348-2 chr11 95966819 95967109 + 1.5 NA Intergenic L1M5|LINE|L1 -42757 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 223.75-5 chr11 91439544 91439706 + 1.5 NA Intergenic Intergenic -570423 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 170.5-85 chr8 133070700 133070941 + 1.5 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -10466 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 286-10 chr12 15702587 15702832 + 1.5 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 86679 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 166.5-105 chr9 77387242 77387436 + 1.5 NA intron (NM_001018037, intron 67 of 70) intron (NM_001018037, intron 67 of 70) -60310 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 297.25-3 chr1 212711893 212712193 + 1.5 NA Intergenic Intergenic -12203 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 221.5-50 chr8 121303058 121303341 + 1.5 NA Intergenic Intergenic -336147 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 174.25-53 chr6 68895725 68895940 + 1.5 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 260550 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 195.75-2 chr1 114409245 114409489 + 1.5 NA intron (NM_015906, intron 12 of 19) intron (NM_015906, intron 12 of 19) 101836 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 242.5-34 chr6 35724786 35725060 + 1.5 NA intron (NM_001145775, intron 1 of 11) MIRb|SINE|MIR 3660 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 320.5-12 chr3 116711885 116712286 + 1.5 NA intron (NR_015391, intron 1 of 3) intron (NR_015391, intron 1 of 3) 2297 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 225.75-18 chr3 96223796 96224016 + 1.5 NA Intergenic Intergenic -136058 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 202.5-40 chr5 24881830 24882034 + 1.5 NA Intergenic Intergenic -41349 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 185.25-41 chr5 27217403 27217582 + 1.5 NA Intergenic Intergenic -178906 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 255.5-11 chr2 40362655 40362876 + 1.5 NA intron (NM_001351483, intron 2 of 8) MER20B|DNA|hAT-Charlie 67539 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 212.25-40 chr8 25050020 25050219 + 1.5 NA Intergenic L2c|LINE|L2 -93250 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 408-3 chr6 44461632 44461942 + 1.5 NA Intergenic AluSz|SINE|Alu 26146 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 337.25-2 chr17 69782122 69782628 + 1.5 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -179332 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 229.75-14 chr2 212200251 212200489 + 1.5 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 225990 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 245.5-26 chr4 69547696 69547901 + 1.5 NA Intergenic Intergenic -21784 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 466-2 chr8 122377130 122377683 + 1.5 NA Intergenic Intergenic 191238 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 316.75-3 chr14 78024527 78024812 + 1.5 NA Intergenic MLT2C1|LTR|ERVL -145704 NM_001366425 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 379.5-4 chr14 70583396 70583869 + 1.5 NA 3' UTR (NM_001284209, exon 8 of 8) 3' UTR (NM_001284209, exon 8 of 8) 17058 NM_001284211 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 184.5-85 chrX 105295766 105296072 + 1.5 NA intron (NM_017416, intron 5 of 10) L2c|LINE|L2 -75226 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 143.5-101 chr8 89813743 89813861 + 1.5 NA Intergenic Intergenic 55986 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 175.75-22 chr2 210119344 210119572 + 1.5 NA intron (NM_001307976, intron 3 of 13) L1MA3|LINE|L1 51951 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 269.5-7 chr10 130559610 130559907 + 1.5 NA Intergenic Intergenic 402910 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 164-75 chrX 107938343 107938452 + 1.5 NA Intergenic Intergenic -2417 NR_110395 101928335 Hs.657090 NR_110395 ENSG00000236064 LOC101928335 - uncharacterized LOC101928335 ncRNA 203.25-15 chr12 14846213 14846379 + 1.5 NA Intergenic Intergenic -2770 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 178.75 chr1 193810120 193810626 + 1.5 NA Intergenic Intergenic 505628 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 245.25-2 chr1 172086457 172086697 + 1.5 NA intron (NM_001278252, intron 12 of 14) MER3|DNA|hAT-Charlie -52231 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 343-6 chr20 34187758 34188125 + 1.5 NA Intergenic Intergenic -72424 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 154-5 chr10 83038703 83038866 + 1.5 NA Intergenic Intergenic 638305 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 189.5-10 chr12 107162874 107163039 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -69407 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 186.75-5 chr12 24869048 24869172 + 1.5 NA intron (NM_001178091, intron 4 of 9) L1M5|LINE|L1 33112 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 285-10 chr2 70111777 70112262 + 1.5 NA Intergenic MIRc|SINE|MIR 13297 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 234.25-2 chr1 150949291 150949523 + 1.5 NA exon (NM_012432, exon 12 of 22) exon (NM_012432, exon 12 of 22) 23044 NM_001366418 9869 Hs.643565 NM_012432 ENSG00000143379 SETDB1 ESET|H3-K9-HMTase4|KG1T|KMT1E|TDRD21 SET domain bifurcated histone lysine methyltransferase 1 protein-coding 182.25-50 chr6 120565528 120565697 + 1.5 NA Intergenic L1ME1|LINE|L1 550433 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 261-8 chr11 122975625 122975931 + 1.5 NA Intergenic MIRc|SINE|MIR 6056 NM_001098169 390259 Hs.449687 NM_001098169 ENSG00000188909 BSX BSX1 brain specific homeobox protein-coding 341.25-11 chrX 98172491 98173124 + 1.5 NA Intergenic Intergenic -608272 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 417.5-3 chr2 74883517 74883937 + 1.5 NA intron (NM_000189, intron 12 of 17) intron (NM_000189, intron 12 of 17) -25404 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 180.25-66 chr8 92847481 92847611 + 1.5 NA Intergenic MIR|SINE|MIR -61486 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 199.5-9 chr11 44213851 44214069 + 1.5 NA intron (NM_207122, intron 10 of 13) intron (NM_207122, intron 10 of 13) 96179 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 196.75-25 chr3 38251693 38251969 + 1.5 NA intron (NM_005109, intron 16 of 17) intron (NM_005109, intron 16 of 17) -13981 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 222.75-44 chr7 119515346 119515630 + 1.5 NA Intergenic Intergenic 391887 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 348.5-3 chr17 70525822 70526190 + 1.5 NA Intergenic L2a|LINE|L2 356471 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 214.5-27 chr2 135873476 135873860 + 1.5 NA intron (NM_005915, intron 1 of 16) intron (NM_005915, intron 1 of 16) 2775 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 379.5-9 chr9 135048901 135049342 + 1.5 NA Intergenic Intergenic -26384 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 309-21 chr8 132755794 132756131 + 1.5 NA intron (NM_144649, intron 3 of 9) MIRb|SINE|MIR 4620 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 228-40 chr7 11816248 11816466 + 1.5 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 15841 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 227-28 chr5 180735828 180736017 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 4136 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 236.5-28 chr20 57094379 57094596 + 1.5 NA Intergenic Intergenic -119209 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 176.75-39 chr4 115356184 115356561 + 1.5 NA Intergenic Intergenic -242752 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 375-4 chr2 7948913 7949188 + 1.5 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 27764 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 190.75-44 chr6 7522250 7522537 + 1.5 NA Intergenic Intergenic -19278 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 207.75-3 chr1 192701266 192701524 + 1.5 NA Intergenic Intergenic -14933 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 136-43 chr21 29264530 29264711 + 1.5 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -34302 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 122-28 chr16 49766085 49766230 + 1.5 NA intron (NM_001271620, intron 2 of 7) intron (NM_001271620, intron 2 of 7) 56581 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 136.5-54 chr2 83277088 83277255 + 1.5 NA Intergenic Intergenic -245643 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 200.25-31 chr3 39463405 39463718 + 1.5 NA Intergenic HAL1|LINE|L1 -4119 NM_001278322 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 219-32 chr6 136206870 136207089 + 1.5 NA Intergenic LTR90B|LTR|LTR 43332 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 123.5-53 chr2 104484334 104484462 + 1.5 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 26111 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 283-8 chr16 69596827 69597056 + 1.5 NA intron (NM_138714, intron 2 of 15) L2c|LINE|L2 30975 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 372.75-7 chr4 87548699 87549213 + 1.5 NA Intergenic Intergenic -19453 NM_001128310 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 305.25-14 chr5 82686449 82686737 + 1.5 NA Intergenic Intergenic -153562 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 213-36 chr5 11607615 11607844 + 1.5 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -18663 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 254.25 chr1 73747506 73747812 + 1.5 NA Intergenic L1MC4|LINE|L1 72980 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 286.25-15 chr5 3708316 3708735 + 1.5 NA Intergenic AluSx1|SINE|Alu 112693 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 229.5-11 chr11 24738929 24739117 + 1.5 NA intron (NM_001009909, intron 4 of 11) MER74A|LTR|ERVL 241970 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 204.5-40 chr21 31437242 31437477 + 1.5 NA intron (NM_001353690, intron 1 of 27) AluJb|SINE|Alu -93005 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 194.25-40 chr4 115476657 115476864 + 1.5 NA Intergenic L1PREC2|LINE|L1 -363140 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 151.75-62 chr4 159539963 159540079 + 1.5 NA Intergenic LTR88b|LTR|Gypsy? 237763 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 278-27 chr8 24088856 24089182 + 1.5 NA Intergenic Intergenic -205021 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 294-11 chr21 28486000 28486397 + 1.5 NA Intergenic Intergenic -53120 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 271.5-19 chr3 146049668 146049948 + 1.5 NA Intergenic Intergenic 19377 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 211.5-33 chr21 45673203 45673417 + 1.5 NA intron (NM_001348238, intron 2 of 16) intron (NM_001348238, intron 2 of 16) 4436 NM_001348241 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 281.25-7 chr17 71582480 71582720 + 1.5 NA Intergenic L1ME3A|LINE|L1 -380421 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 193.5-46 chr3 153014542 153014734 + 1.5 NA Intergenic L1ME4b|LINE|L1 -147588 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 174.5-22 chr13 107582509 107582652 + 1.5 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -51332 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 139.5-41 chr2 52978185 52978361 + 1.5 NA Intergenic Intergenic -275658 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 191-22 chr2 60704519 60704716 + 1.5 NA Intergenic Intergenic -51651 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 258.5 chr10 22411453 22411760 + 1.5 NA intron (NM_001253854, intron 13 of 13) intron (NM_001253854, intron 13 of 13) 26323 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 298.25-4 chr12 49400325 49400617 + 1.5 NA intron (NM_001293285, intron 3 of 14) L2a|LINE|L2 11297 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 247.5-15 chr2 70256138 70256390 + 1.5 NA Intergenic MER34B|LTR|ERV1 -1873 NM_016297 51449 Hs.567502 NM_016297 ENSG00000116005 PCYOX1 PCL1 prenylcysteine oxidase 1 protein-coding 143-78 chrX 72156707 72156897 + 1.5 NA intron (NM_207422, intron 1 of 1) intron (NM_207422, intron 1 of 1) 12618 NM_207422 392490 Hs.660859 NM_207422 FLJ44635 - TPT1-like protein protein-coding 176.25-63 chr6 162901609 162901766 + 1.5 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 152474 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 214.5-58 chr8 87126155 87126421 + 1.5 NA intron (NM_173538, intron 4 of 10) L1ME1|LINE|L1 259873 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 240.75-24 chr3 11778984 11779256 + 1.5 NA Intergenic MSTB1|LTR|ERVL-MaLR -58581 NM_001284390 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 217.25-18 chr20 10363057 10363296 + 1.5 NA Intergenic Intergenic 68749 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 302-4 chr12 9617015 9617404 + 1.5 NA promoter-TSS (NR_046450) promoter-TSS (NR_046450) -75 NR_046450 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 178.5-86 chr8 102846492 102846696 + 1.5 NA intron (NM_001363010, intron 2 of 11) intron (NM_001363010, intron 2 of 11) 17569 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 240.75-17 chr2 77415920 77416162 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 106335 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 157.75-12 chr10 74748198 74748361 + 1.5 NA Intergenic Intergenic -76976 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 234-33 chr4 169416356 169416609 + 1.5 NA intron (NM_001199400, intron 28 of 32) intron (NM_001199400, intron 28 of 32) -145526 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 185.75-37 chr21 33549333 33549778 + 1.5 NA exon (NM_032195, exon 3 of 7) exon (NM_032195, exon 3 of 7) -1107 NR_106756 102465248 NR_106756 ENSG00000284448 MIR6501 hsa-mir-6501|mir-6501 microRNA 6501 ncRNA 263.5-26 chr5 61754126 61754404 + 1.5 NA Intergenic Intergenic -18567 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 201-35 chr3 147536949 147537177 + 1.5 NA Intergenic Intergenic 115736 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 290.75-3 chr16 85050520 85050713 + 1.5 NA intron (NM_001286566, intron 1 of 11) intron (NM_001286566, intron 1 of 11) -12596 NM_001286565 9764 Hs.301658 NM_014732 ENSG00000135709 KIAA0513 - KIAA0513 protein-coding 166-56 chr7 99500837 99501081 + 1.5 NA promoter-TSS (NM_032164) promoter-TSS (NM_032164) -651 NM_001345968 84124 Hs.386324 NM_032164 ENSG00000160908 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 184.5-57 chr4 99899291 99899487 + 1.5 NA 3' UTR (NM_001278310, exon 7 of 7) 3' UTR (NM_001278310, exon 7 of 7) -4843 NM_001243736 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 244.5-34 chr7 9071280 9071610 + 1.5 NA Intergenic Intergenic -562825 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 181.5-63 chr6 162623338 162623532 + 1.5 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -103697 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 261.25-12 chr7 121605940 121606136 + 1.5 NA Intergenic LTR105_Mam|LTR|ERVL -209670 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 214-3 chr1 82022539 82022887 + 1.5 NA Intergenic MER21C|LTR|ERVL 220260 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 143.25-77 chr8 140604906 140605041 + 1.5 NA intron (NM_001164623, intron 1 of 17) L1MC5|LINE|L1 30660 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 237-21 chr21 29652638 29652971 + 1.5 NA intron (NM_000830, intron 5 of 16) intron (NM_000830, intron 5 of 16) 56764 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 197.25-10 chr10 79259315 79259518 + 1.5 NA intron (NM_020338, intron 7 of 24) intron (NM_020338, intron 7 of 24) -88053 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 332-6 chr18 7595602 7595976 + 1.5 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 28473 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 183.5-48 chr3 69532055 69532266 + 1.5 NA Intergenic Intergenic -146072 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 172.25-78 chrX 53723866 53724014 + 1.5 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -37221 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 151.5-30 chr14 97732704 97732847 + 1.5 NA Intergenic Intergenic 30056 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 192.75-24 chr3 64958860 64959022 + 1.5 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -270941 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 144.75-31 chr15 94521416 94521608 + 1.5 NA Intergenic LTR79|LTR|ERVL 165582 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 232.5-31 chr4 80855102 80855438 + 1.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -175438 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 145.5-102 chrX 57838994 57839136 + 1.5 NA Intergenic L1PA15|LINE|L1 71568 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 324.75 chr10 92242147 92242557 + 1.5 NA intron (NM_014912, intron 1 of 9) intron (NM_014912, intron 1 of 9) 927 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 409-4 chr2 42164781 42165305 + 1.5 NA intron (NR_110584, intron 1 of 3) intron (NR_110584, intron 1 of 3) -4310 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 167-57 chr6 64844914 64845080 + 1.5 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -456421 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 189.25-8 chr12 16372785 16373075 + 1.5 NA intron (NM_001267598, intron 3 of 3) (ATTATAT)n|Simple_repeat|Simple_repeat 19513 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 355.5-7 chr18 80242961 80243321 + 1.5 NA intron (NM_032510, intron 1 of 2) L1ME4a|LINE|L1 4373 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 233.5-49 chr7 32192219 32192442 + 1.5 NA intron (NM_001322059, intron 2 of 17) L1MD1|LINE|L1 106998 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 223-33 chr4 110171784 110172020 + 1.5 NA intron (NM_001130721, intron 2 of 4) AluJo|SINE|Alu 26713 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 282.5-22 chr9 131864398 131864688 + 1.5 NA intron (NM_001253881, intron 5 of 6) intron (NM_001253881, intron 5 of 6) -124599 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 183-3 chr1 149924144 149924394 + 1.5 NA intron (NM_005850, intron 4 of 5) AluJb|SINE|Alu 3534 NM_005850 10262 Hs.516160 NM_005850 ENSG00000143368 SF3B4 AFD1|Hsh49|SAP49|SF3b49 splicing factor 3b subunit 4 protein-coding 216-32 chr5 109105377 109105655 + 1.5 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 180910 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 163.5-57 chr3 132095750 132095904 + 1.5 NA Intergenic Intergenic -56221 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 146.25-74 chr8 123393569 123393761 + 1.5 NA intron (NM_014109, intron 1 of 27) AluSx|SINE|Alu 2782 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 135-55 chr4 178111872 178111986 + 1.5 NA Intergenic Intergenic -203993 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 310.5-15 chr9 98116747 98117067 + 1.5 NA intron (NM_033219, intron 1 of 6) LTR23-int|LTR|ERV1 2315 NM_033219 9830 Hs.575631 NM_014788 ENSG00000106785 TRIM14 - tripartite motif containing 14 protein-coding 150.75-8 chr11 78461337 78461479 + 1.5 NA intron (NM_024678, intron 11 of 13) L2b|LINE|L2 -31572 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 227.5-55 chr8 100438135 100438415 + 1.5 NA Intergenic Intergenic 55512 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 141.75-79 chr6 129244271 129244408 + 1.5 NA intron (NM_000426, intron 12 of 64) MamRTE1|LINE|RTE-BovB 361198 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 116.5-132 chrX 27879833 27879973 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 71913 NM_182506 139422 Hs.447363 NM_182506 ENSG00000177689 MAGEB10 - MAGE family member B10 protein-coding 187.5-60 chr5 110055008 110055188 + 1.5 NA Intergenic Intergenic 171916 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 163-38 chr3 113459933 113460075 + 1.5 NA intron (NM_001331078, intron 12 of 17) L1M5|LINE|L1 -18490 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 228-2 chr1 179821520 179821738 + 1.5 NA Intergenic Intergenic 17705 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 312-4 chr14 73777947 73778305 + 1.5 NA intron (NM_001043318, intron 1 of 11) AluSx|SINE|Alu 9082 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 301.5-15 chr6 125882971 125883203 + 1.5 NA intron (NM_001199621, intron 6 of 14) intron (NM_001199621, intron 6 of 14) -36168 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 117.5-76 chr5 92313947 92314042 + 1.5 NA Intergenic MER124|DNA?|DNA? -930677 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 244-10 chr17 40557549 40557729 + 1.5 NA intron (NM_001301714, intron 1 of 1) intron (NM_001301714, intron 1 of 1) 2755 NM_001301718 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 287.5-25 chr6 51151852 51152282 + 1.5 NA Intergenic Intergenic 333196 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 161.5-30 chr14 44839950 44840072 + 1.5 NA Intergenic MER5A|DNA|hAT-Charlie -40885 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 274-13 chr2 69501898 69502359 + 1.5 NA intron (NM_014911, intron 16 of 21) L1M5|LINE|L1 18043 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 235-12 chr14 24101239 24101678 + 1.5 NA TTS (NM_001018073).2 TTS (NM_001018073).2 -6328 NM_001354769 4901 Hs.652297 NM_006177 ENSG00000129535 NRL D14S46E|NRL-MAF|RP27 neural retina leucine zipper protein-coding 139-73 chr9 87048723 87048897 + 1.5 NA Intergenic L1MB7|LINE|L1 -6684 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 121.75-38 chr2 75933428 75933552 + 1.5 NA Intergenic Intergenic -222575 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 209.75-30 chr5 23479147 23479287 + 1.5 NA Intergenic L2a|LINE|L2 -28392 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 284-11 chr2 147850757 147851157 + 1.5 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 5928 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 217-31 chr8 117273107 117273411 + 1.5 NA Intergenic Intergenic 138264 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 275-16 chr7 107314340 107314558 + 1.5 NA intron (NM_181733, intron 11 of 20) intron (NM_181733, intron 11 of 20) 145446 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 392.5-8 chr5 135942789 135943204 + 1.5 NA TTS (NR_152420) TTS (NR_152420) 11987 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 238.5-11 chr12 124094967 124095252 + 1.5 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 121894 NM_001347902 100533183 Hs.524828 NM_001204299 ENSG00000178882 ZNF664-RFLNA - ZNF664-RFLNA readthrough protein-coding 254.5-25 chr5 125465307 125465559 + 1.5 NA Intergenic L1ME3A|LINE|L1 -27828 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 181.25-41 chr3 58058106 58058357 + 1.5 NA intron (NM_001164318, intron 1 of 45) intron (NM_001164318, intron 1 of 45) 49809 NM_001457 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 145.5-35 chr17 75411615 75411737 + 1.5 NA Intergenic AluJb|SINE|Alu 5607 NR_037449 100500841 NR_037449 ENSG00000264511 MIR3678 mir-3678 microRNA 3678 ncRNA 230-6 chr14 65772621 65772787 + 1.5 NA Intergenic Intergenic 301602 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 150.75-11 chr12 114694425 114694597 + 1.5 NA Intergenic Intergenic -10336 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 177-7 chr11 56957402 56957615 + 1.5 NA Intergenic L1MD2|LINE|L1 -31406 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 277.5-7 chr17 5609828 5610114 + 1.5 NA Intergenic MIR3|SINE|MIR -25462 NM_033004 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 299.5-9 chr3 189407973 189408323 + 1.5 NA Intergenic L1ME3E|LINE|L1 -167554 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 212.25-10 chr11 33471514 33471703 + 1.5 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 95500 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 195.5-44 chr2 111520828 111520992 + 1.5 NA Intergenic MamRep1151|LTR?|LTR? -25749 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 277.25-9 chr12 33193356 33193736 + 1.5 NA Intergenic L1PB4|LINE|L1 246273 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 241.5-31 chr5 43990737 43990994 + 1.5 NA Intergenic Intergenic -387635 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 241.5-35 chr7 86939628 86939819 + 1.5 NA intron (NM_001291991, intron 5 of 20) intron (NM_001291991, intron 5 of 20) 26176 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 171.25-28 chr2 172225648 172225967 + 1.5 NA Intergenic Intergenic 122801 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 165.75-19 chr14 54292146 54292309 + 1.5 NA Intergenic Intergenic -104641 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 269-11 chr20 48766786 48767018 + 1.5 NA intron (NM_020820, intron 1 of 39) MIR|SINE|MIR 61097 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 302-11 chr2 18940309 18940655 + 1.5 NA Intergenic MLT1L|LTR|ERVL-MaLR 86489 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 214-7 chr10 118679992 118680262 + 1.5 NA 3' UTR (NM_153810, exon 9 of 9) 3' UTR (NM_153810, exon 9 of 9) 74843 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 157-24 chr17 80035081 80035202 + 1.5 NA intron (NM_019020, intron 1 of 11) intron (NM_019020, intron 1 of 11) 731 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 117-17 chr11 111925939 111926053 + 1.5 NA non-coding (NR_037651, exon 5 of 5) non-coding (NR_037651, exon 5 of 5) -1148 NM_001278542 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 301.5-12 chr3 83878848 83879104 + 1.5 NA Intergenic Intergenic 990599 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 144.75-50 chr21 17883379 17883516 + 1.5 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 2161 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 270.5-27 chr7 87966162 87966445 + 1.5 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 32052 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 176-3 chr1 107182823 107182991 + 1.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 34838 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 332.25-5 chr7 85121330 85121667 + 1.5 NA intron (NM_152754, intron 1 of 16) intron (NM_152754, intron 1 of 16) 433 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 174.5-61 chr3 197138515 197138683 + 1.5 NA intron (NM_001366216, intron 7 of 23) intron (NM_001366216, intron 7 of 23) 45273 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 172.5-68 chr6 18441727 18441924 + 1.5 NA intron (NM_182757, intron 4 of 7) MIR|SINE|MIR 54475 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 284-13 chr21 31033911 31034222 + 1.5 NA Intergenic Intergenic 4410 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 298-5 chr12 22609128 22609466 + 1.5 NA TTS (NR_135031) TTS (NR_135031) 15749 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 159-30 chr18 64501602 64501777 + 1.5 NA Intergenic Intergenic -241634 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 189.75-35 chr4 56596419 56596648 + 1.5 NA exon (NM_001256475, exon 7 of 9) exon (NM_001256475, exon 7 of 9) 59989 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 225-16 chr2 150704043 150704281 + 1.5 NA Intergenic Intergenic 75265 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 210.75-18 chr2 222704741 222704888 + 1.5 NA intron (NM_058165, intron 5 of 5) intron (NM_058165, intron 5 of 5) 33156 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 284.75-9 chr20 55059037 55059554 + 1.5 NA Intergenic Intergenic -363748 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 219-19 chr2 237657414 237657573 + 1.5 NA intron (NM_001137550, intron 1 of 23) L1M7|LINE|L1 29906 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 222.5-18 chr15 56419095 56419255 + 1.5 NA intron (NM_198524, intron 10 of 12) L1MEc|LINE|L1 45962 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 253-3 chr1 116363764 116363991 + 1.5 NA Intergenic Intergenic -9367 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 230.5-31 chr21 18232821 18233167 + 1.5 NA intron (NM_001204178, intron 2 of 5) L1MA7|LINE|L1 -11839 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 160-25 chr2 226912852 226913151 + 1.5 NA intron (NM_001349069, intron 7 of 8) intron (NM_001349069, intron 7 of 8) 76947 NM_001349071 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 226.5-36 chr3 57334158 57334459 + 1.5 NA intron (NM_001366028, intron 62 of 73) L1MC1|LINE|L1 -41623 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 221.25-13 chr2 45711442 45711622 + 1.5 NA intron (NM_005400, intron 1 of 14) MIR|SINE|MIR 59857 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 186.5-4 chr1 180773711 180773892 + 1.5 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) -139096 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 268.5-12 chr16 72576877 72577073 + 1.5 NA intron (NR_159372, intron 1 of 7) L2a|LINE|L2 87995 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 193.5-79 chr8 141886023 141886246 + 1.5 NA Intergenic Intergenic -99821 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 284.25-8 chr17 35145409 35145609 + 1.5 NA Intergenic AluSx1|SINE|Alu -2308 NM_001267052 146862 Hs.379636 NM_173167 ENSG00000141161 UNC45B CMYA4|CTRCT43|SMUNC45|UNC-45B|UNC45 unc-45 myosin chaperone B protein-coding 280-25 chr8 87340909 87341169 + 1.5 NA intron (NM_173538, intron 8 of 10) L1M4|LINE|L1 474624 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 270-27 chr7 71589967 71590228 + 1.5 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -282327 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 135.5-88 chr5 157060510 157060697 + 1.5 NA Intergenic Intergenic -1487 NM_001308156 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 364.5 chr13 67469719 67470093 + 1.5 NA Intergenic L1M2|LINE|L1 97519 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 254.5-9 chr13 111589082 111589336 + 1.5 NA Intergenic Intergenic -6800 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 180.75-6 chr1 64681386 64681528 + 1.5 NA intron (NM_020925, intron 25 of 26) intron (NM_020925, intron 25 of 26) -63516 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 164.25-29 chr2 16066684 16066899 + 1.5 NA intron (NR_126559, intron 1 of 3) intron (NR_126559, intron 1 of 3) 16364 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 274.5-12 chr17 80225431 80225656 + 1.5 NA intron (NM_001166348, intron 4 of 16) intron (NM_001166348, intron 4 of 16) 5116 NM_001166349 284129 Hs.4866 NM_173626 ENSG00000181045 SLC26A11 - solute carrier family 26 member 11 protein-coding 323.5-11 chr6 97975643 97975910 + 1.5 NA Intergenic Intergenic -48755 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 203-35 chr7 47509167 47509352 + 1.5 NA intron (NM_022748, intron 2 of 30) intron (NM_022748, intron 2 of 30) -44456 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 372.75-8 chr8 83214577 83214962 + 1.5 NA Intergenic Intergenic -188989 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 212.25-42 chr8 137266118 137266379 + 1.5 NA Intergenic Intergenic 147340 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 148.25-2 chr1 17946692 17946953 + 1.5 NA Intergenic AluJb|SINE|Alu -118835 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 136.25-13 chr11 5925097 5925251 + 1.5 NA Intergenic L3|LINE|CR1 -22173 NM_001003443 390083 Hs.553741 NM_001003443 ENSG00000184478 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor family 56 subfamily A member 3 protein-coding 222.5-43 chr6 50655871 50656121 + 1.5 NA Intergenic Intergenic -57548 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 237.5-5 chr10 15922470 15922648 + 1.5 NA Intergenic L1M4c|LINE|L1 -62026 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 169.5-26 chr14 89991203 89991342 + 1.5 NA intron (NM_001008744, intron 11 of 15) intron (NM_001008744, intron 11 of 15) 35345 NM_001008744 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 313-13 chr6 116472375 116472715 + 1.5 NA Intergenic Intergenic 11170 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 172.25-67 chr6 119192465 119192806 + 1.5 NA intron (NM_005907, intron 9 of 12) intron (NM_005907, intron 9 of 12) -43442 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 140.5-61 chr3 30045557 30045695 + 1.5 NA Intergenic Intergenic -111470 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 213.75-50 chr8 124504069 124504405 + 1.5 NA intron (NM_001317889, intron 9 of 12) intron (NM_001317889, intron 9 of 12) 4339 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 198-17 chr15 97409558 97409779 + 1.5 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 112143 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 287.75-2 chr12 30680266 30680537 + 1.5 NA intron (NM_006390, intron 5 of 24) MIR|SINE|MIR -3157 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 263-8 chr12 38645568 38645896 + 1.5 NA Intergenic LTR79|LTR|ERVL 259859 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 227.25-7 chr10 98341538 98341767 + 1.5 NA Intergenic AluSc|SINE|Alu 53655 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 241.75 chr1 118443716 118444027 + 1.5 NA Intergenic L1MEd|LINE|L1 -258643 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 195.5-82 chr7 27732484 27732645 + 1.5 NA Intergenic L2|LINE|L2 -6809 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 162-50 chr6 65593251 65593366 + 1.5 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -13504 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 169.25-20 chr14 87813702 87813823 + 1.5 NA Intergenic L2c|LINE|L2 -158468 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 285-3 chr1 83102070 83102362 + 1.5 NA intron (NR_147074, intron 9 of 10) intron (NR_147074, intron 9 of 10) -116008 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 203.25-30 chr22 30432101 30432346 + 1.5 NA promoter-TSS (NR_148046) promoter-TSS (NR_148046) -463 NR_148046 105372990 Hs.565803 NR_148046 LOC105372990 - uncharacterized LOC105372990 ncRNA 129.75-83 chr9 23288773 23289051 + 1.5 NA Intergenic Intergenic 383487 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 272-28 chr9 6232157 6232470 + 1.5 NA intron (NM_001199640, intron 1 of 6) intron (NM_001199640, intron 1 of 6) -4768 NM_001314045 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 182.5-51 chr4 69688044 69688239 + 1.5 NA Intergenic L1M5|LINE|L1 -34894 NM_001252274 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 287-18 chr6 81914440 81914670 + 1.5 NA intron (NR_149135, intron 3 of 3) MER2|DNA|TcMar-Tigger 18925 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 174.5-31 chr16 78264296 78264426 + 1.5 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 164707 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 164.5-59 chr3 143640342 143640515 + 1.5 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 208040 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 185.25-23 chr19 37020475 37020820 + 1.5 NA Intergenic L1MB3|LINE|L1 -57575 NM_001329520 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 352.5-14 chr8 124766295 124766685 + 1.5 NA Intergenic Intergenic -37983 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 287.5-8 chr14 64378115 64378412 + 1.5 NA Intergenic AluSx|SINE|Alu -10090 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 327.5-12 chr8 112088594 112088956 + 1.5 NA Intergenic Intergenic -554718 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 159 chr1 95985181 95985347 + 1.5 NA Intergenic Intergenic -6804 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 179-10 chr10 94948257 94948392 + 1.5 NA intron (NM_000771, intron 4 of 8) intron (NM_000771, intron 4 of 8) 9666 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 275.5-18 chr2 153024222 153024453 + 1.5 NA Intergenic MIRb|SINE|MIR 305700 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 200.5-59 chr7 52072129 52072421 + 1.5 NA Intergenic L1ME3A|LINE|L1 -679019 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 306-15 chr2 46676801 46677179 + 1.5 NA Intergenic FLAM_C|SINE|Alu -21970 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 313.5-15 chr5 127425331 127425675 + 1.5 NA TTS (NM_001308119) TTS (NM_001308119) -92137 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 155.5-96 chr8 136581148 136581326 + 1.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 50439 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 194-37 chr7 25864063 25864296 + 1.5 NA Intergenic Intergenic -74060 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 248.25-11 chr18 65686230 65686603 + 1.5 NA Intergenic Intergenic -63836 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 161-34 chr18 40053399 40053512 + 1.5 NA Intergenic L1ME1|LINE|L1 -12831 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 269.75-5 chr14 59926438 59926627 + 1.5 NA intron (NR_075071, intron 1 of 32) L1ME3A|LINE|L1 6819 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 216-41 chr8 14250153 14250434 + 1.5 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 603217 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 146.5-80 chr6 117024482 117024660 + 1.5 NA Intergenic L2c|LINE|L2 147329 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 291.75-10 chr2 113916369 113916588 + 1.5 NA intron (NR_102318, intron 2 of 10) intron (NR_102318, intron 2 of 10) -25486 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 127-59 chr3 42576574 42576732 + 1.5 NA intron (NM_001201572, intron 1 of 6) L1MD2|LINE|L1 -5187 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 215-18 chr14 75939827 75940061 + 1.5 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 42051 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 228.25-2 chr1 86966596 86967035 + 1.5 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) 52180 NM_001134492 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 277-6 chr12 60144866 60145159 + 1.5 NA Intergenic Intergenic 455642 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 133.5-75 chr4 41775105 41775281 + 1.5 NA Intergenic Intergenic -26223 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 178.25-44 chr4 58534414 58534695 + 1.5 NA intron (NR_133943, intron 1 of 2) L1MA2|LINE|L1 1774 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 129.25-84 chr9 79936202 79936311 + 1.5 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -38767 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 150-53 chr4 14302405 14302547 + 1.5 NA Intergenic Intergenic 190508 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 347.5-16 chr8 119073492 119073987 + 1.5 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -4957 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 444 chr5 87288256 87288852 + 1.5 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 19630 NM_022650 5921 Hs.664080 NM_002890 ENSG00000145715 RASA1 CM-AVM|CMAVM|CMAVM1|GAP|PKWS|RASA|RASGAP|p120|p120GAP|p120RASGAP RAS p21 protein activator 1 protein-coding 213.5-3 chr1 72873543 72873715 + 1.5 NA Intergenic Intergenic -432541 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 202.75-4 chr1 108075559 108075785 + 1.5 NA Intergenic L1MC3|LINE|L1 -110492 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 270.5-3 chr10 6060467 6060925 + 1.5 NA intron (NM_000417, intron 1 of 7) AluSg|SINE|Alu 1671 NM_001308242 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 274.5-16 chr2 71573115 71573489 + 1.5 NA intron (NM_001130985, intron 29 of 54) intron (NM_001130985, intron 29 of 54) 106603 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 124.25-51 chr2 157475194 157475419 + 1.5 NA Intergenic L1M5|LINE|L1 -31217 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 151.5-56 chr4 25403139 25403335 + 1.5 NA intron (NM_013367, intron 17 of 28) intron (NM_013367, intron 17 of 28) 25974 NM_001286756 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 285.75-6 chr11 48206206 48206468 + 1.5 NA Intergenic L1PA16|LINE|L1 -10473 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 204.5-48 chr5 81501299 81501484 + 1.5 NA intron (NM_001256734, intron 4 of 15) intron (NM_001256734, intron 4 of 15) -107257 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 200.25-19 chr14 50629606 50629860 + 1.5 NA intron (NM_015915, intron 13 of 13) intron (NM_015915, intron 13 of 13) 38573 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 131-62 chr6 119743869 119744051 + 1.5 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 194152 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 239.25-25 chr5 99328078 99328255 + 1.5 NA Intergenic Intergenic -205824 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 220.75-28 chr6 21335485 21335702 + 1.5 NA Intergenic Intergenic 176299 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 275.25-12 chr18 65899525 65899910 + 1.5 NA Intergenic Intergenic 148705 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 150.5-45 chr2 70385675 70385910 + 1.5 NA Intergenic AluJo|SINE|Alu -83725 NM_001329757 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 235-14 chr14 71632790 71633051 + 1.5 NA intron (NM_001354286, intron 8 of 24) L1MDa|LINE|L1 46622 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 368.25-3 chr7 106866845 106867340 + 1.5 NA intron (NM_002649, intron 1 of 10) intron (NM_002649, intron 1 of 10) 1613 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 237.5-12 chr14 58741525 58741783 + 1.5 NA Intergenic Intergenic -86634 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 255.5-5 chr11 97351554 97351829 + 1.5 NA Intergenic MER39|LTR|ERV1 843266 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 324.75-9 chr2 199325997 199326258 + 1.5 NA intron (NM_001172509, intron 8 of 10) intron (NM_001172509, intron 8 of 10) 131812 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 230.5-30 chr2 226509087 226509325 + 1.5 NA Intergenic Intergenic 149587 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 237.75-9 chr11 44110765 44111023 + 1.5 NA intron (NM_207122, intron 3 of 13) intron (NM_207122, intron 3 of 13) 14697 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 153.5-77 chr5 39948184 39948298 + 1.5 NA Intergenic Intergenic -104050 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 156-58 chr6 11473865 11474037 + 1.5 NA Intergenic MIRb|SINE|MIR -63798 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 270.5-19 chr21 46532985 46533243 + 1.5 NA intron (NM_001146115, intron 9 of 19) intron (NM_001146115, intron 9 of 19) 70643 NR_046400 100862692 Hs.737163 NR_046400 ENSG00000223692 DIP2A-IT1 - DIP2A intronic transcript 1 ncRNA 127.5-84 chr3 93977287 93977541 + 1.5 NA Intergenic Intergenic -2725 NM_001174151 200894 Hs.533086 NM_144996 ENSG00000169379 ARL13B ARL2L1|JBTS8 ADP ribosylation factor like GTPase 13B protein-coding 212-3 chr1 173243264 173243520 + 1.5 NA intron (NR_037845, intron 2 of 2) LTR26|LTR|ERV1 -36061 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 133.5-93 chr5 117279272 117279429 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -136162 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 269-5 chr14 64107883 64108090 + 1.5 NA intron (NM_015180, intron 65 of 114) MIRb|SINE|MIR -12861 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 206-11 chr13 111409842 111410134 + 1.5 NA Intergenic Intergenic 89346 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 203-11 chr14 38302988 38303175 + 1.5 NA Intergenic L1PA15|LINE|L1 -46988 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 200-26 chr2 226015627 226015823 + 1.5 NA Intergenic Intergenic -127069 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 176-21 chr2 120637038 120637227 + 1.5 NA Intergenic Intergenic -98736 NM_001371271 261-39 chr5 152494839 152495210 + 1.5 NA Intergenic L1ME4b|LINE|L1 -89745 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 207.75-30 chr4 36096580 36096794 + 1.5 NA intron (NR_146894, intron 27 of 32) intron (NR_146894, intron 27 of 32) 147252 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 117-42 chr2 177145816 177145916 + 1.5 NA Intergenic Intergenic 66545 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 355.5-12 chr5 105165084 105165463 + 1.5 NA Intergenic L1ME3A|LINE|L1 65799 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 226-16 chr2 133886254 133886515 + 1.5 NA Intergenic Intergenic -233551 NM_001371457 236.25-21 chr21 37090188 37090426 + 1.5 NA intron (NM_003316, intron 6 of 45) intron (NM_003316, intron 6 of 45) 7360 NM_003316 7267 Hs.368214 NM_003316 ENSG00000182670 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 281.5-20 chr8 77990781 77991052 + 1.5 NA Intergenic Intergenic -525424 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 289.75-10 chr2 41139411 41139729 + 1.5 NA Intergenic Intergenic -627135 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 177-61 chr8 122183639 122183863 + 1.5 NA Intergenic MIRb|SINE|MIR 384893 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 252.25-13 chr2 28213278 28213664 + 1.5 NA intron (NM_199193, intron 8 of 13) intron (NM_199193, intron 8 of 13) -6510 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 275.5-30 chr7 8392854 8393099 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -40633 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 247.5-41 chr8 101307312 101307508 + 1.5 NA Intergenic U7|snRNA|snRNA -61483 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 306.5-5 chr2 29343570 29343935 + 1.5 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) -119852 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 202.5-3 chr10 79477984 79478309 + 1.5 NA Intergenic AluSg|SINE|Alu -32522 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 170.5-91 chrX 12706099 12706262 + 1.5 NA intron (NM_001368400, intron 10 of 15) intron (NM_001368400, intron 10 of 15) -85175 NM_001039091 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 175-17 chr15 63593202 63593441 + 1.5 NA non-coding (NR_046341, exon 16 of 16) non-coding (NR_046341, exon 16 of 16) -4066 NM_001367809 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 243-25 chr5 30611990 30612215 + 1.5 NA Intergenic MER34D|LTR|ERV1 -581584 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 306-5 chr11 24937203 24937466 + 1.5 NA intron (NM_001009909, intron 7 of 11) MIRc|SINE|MIR 440281 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 173.5-73 chr4 30495029 30495165 + 1.5 NA Intergenic Intergenic -225272 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 227.25-2 chr1 101771290 101771519 + 1.5 NA Intergenic Intergenic 75676 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 207.5-41 chr3 96340454 96340651 + 1.5 NA Intergenic LTR35B|LTR|ERV1 -19412 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 235.25-20 chr4 108797893 108798149 + 1.5 NA Intergenic Intergenic -34968 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 216.75-40 chr7 11181401 11181653 + 1.5 NA Intergenic Intergenic 207655 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 177.5-39 chr20 7624606 7625061 + 1.5 NA Intergenic L1MEd|LINE|L1 253225 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 171-26 chr16 61361557 61361792 + 1.5 NA Intergenic L1MEc|LINE|L1 -305908 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 118.5-6 chr1 70518394 70518541 + 1.5 NA Intergenic L1MA4|LINE|L1 107199 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 329.5-3 chr11 79390860 79391112 + 1.5 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 11123 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 182-2 chr1 59117201 59117427 + 1.5 NA Intergenic LTR85c|LTR|Gypsy? 29493 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 265.5-3 chr10 22232418 22232760 + 1.5 NA Intergenic Intergenic -19483 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 305.5-4 chr12 116983024 116983370 + 1.5 NA intron (NR_103809, intron 2 of 3) intron (NR_103809, intron 2 of 3) 4140 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 216.5-34 chr5 125699089 125699374 + 1.5 NA Intergenic MIR|SINE|MIR 205970 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 281.75-8 chr2 58338268 58338545 + 1.5 NA Intergenic Intergenic 62529 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 323.5-12 chr7 111714136 111714596 + 1.5 NA Intergenic AluSq2|SINE|Alu -94139 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 255.5-15 chr2 116227110 116227677 + 1.5 NA Intergenic AluSc|SINE|Alu 883578 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 159.5-35 chr18 72593014 72593274 + 1.5 NA Intergenic L1MA3|LINE|L1 -48802 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 213.5-44 chr7 7981780 7982111 + 1.5 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 13149 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 180-13 chr10 115122737 115122864 + 1.5 NA intron (NM_001276282, intron 3 of 7) intron (NM_001276282, intron 3 of 7) 29435 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 467-2 chr12 17817827 17818325 + 1.5 NA Intergenic Intergenic 144777 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 293.5-8 chr17 66372536 66373057 + 1.5 NA intron (NM_002737, intron 2 of 16) AluSx1|SINE|Alu 44058 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 318.75-4 chr16 86317057 86317296 + 1.5 NA Intergenic Intergenic 28503 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 333-11 chr5 90376018 90376300 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 33627 NM_001297768 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 136.5-71 chr3 117453421 117453557 + 1.5 NA Intergenic Intergenic 237436 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 169-26 chr2 68790884 68791088 + 1.5 NA intron (NM_014882, intron 3 of 9) L2a|LINE|L2 16076 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 162-54 chr6 146034142 146034330 + 1.5 NA intron (NM_001278065, intron 2 of 9) L3|LINE|CR1 5038 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 164.5-23 chr15 92868760 92868919 + 1.5 NA Intergenic Intergenic -14004 NR_037601 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 293-12 chr2 238042305 238042683 + 1.5 NA non-coding (NR_103499, exon 8 of 8) non-coding (NR_103499, exon 8 of 8) -18507 NM_016510 51540 Hs.731909 NM_016510 ENSG00000132330 SCLY SCL|hSCL selenocysteine lyase protein-coding 334.5-8 chr4 40464100 40464401 + 1.5 NA intron (NM_001098634, intron 3 of 6) intron (NM_001098634, intron 3 of 6) 37869 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 168-55 chr5 93813069 93813189 + 1.5 NA intron (NM_032042, intron 8 of 10) MLT1A|LTR|ERVL-MaLR -71529 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 248.5-13 chr2 56325106 56325370 + 1.5 NA intron (NM_001348516, intron 2 of 2) (TATATG)n|Simple_repeat|Simple_repeat -139468 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 142-72 chr8 139397702 139397889 + 1.5 NA Intergenic L2c|LINE|L2 305328 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 210.5-25 chr17 52570321 52570698 + 1.5 NA Intergenic Intergenic 179987 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 305.25-8 chr2 71533203 71533645 + 1.5 NA intron (NM_001130985, intron 14 of 54) L1ME4b|LINE|L1 66725 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 156.75-87 chr8 116286120 116286296 + 1.5 NA intron (NR_046215, intron 1 of 13) MIRb|SINE|MIR 38851 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 386.5-7 chr8 61329474 61329974 + 1.5 NA intron (NM_173519, intron 2 of 5) HAL1|LINE|L1 41754 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 248.25-35 chr8 117850955 117851168 + 1.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 69852 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 237.5-10 chr12 123219597 123219930 + 1.5 NA intron (NR_103517, intron 6 of 23) intron (NR_103517, intron 6 of 23) 13378 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 173.75-64 chrX 100287186 100287605 + 1.5 NA Intergenic L1PB|LINE|L1 122878 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 323.25-4 chr15 89195830 89196126 + 1.5 NA 3' UTR (NM_152924, exon 11 of 11) 3' UTR (NM_152924, exon 11 of 11) 25601 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 161.5-2 chr1 49298287 49298480 + 1.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 40972 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 237-31 chr5 131206623 131206831 + 1.5 NA Intergenic L2|LINE|L2 35783 NR_121658 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 166.5-8 chr1 118109898 118110027 + 1.5 NA intron (NM_206996, intron 4 of 48) MER103C|DNA|hAT-Charlie 75266 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 252.5-8 chr15 68174063 68174348 + 1.5 NA intron (NM_016166, intron 9 of 13) intron (NM_016166, intron 9 of 13) 31905 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 295.5-24 chr6 155463542 155463820 + 1.5 NA Intergenic Intergenic -7842 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 175.5-54 chr4 30957763 30957954 + 1.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -213286 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 247-15 chr2 28349123 28349305 + 1.5 NA Intergenic Intergenic -38755 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 160.25-52 chr7 102109102 102109272 + 1.5 NA intron (NM_001913, intron 6 of 22) intron (NM_001913, intron 6 of 22) -175954 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 291.75-16 chr4 20273484 20273745 + 1.5 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 21709 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 253.5-32 chr4 63724900 63725116 + 1.5 NA Intergenic Intergenic 684442 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 144-38 chr20 52426116 52426252 + 1.5 NA Intergenic Intergenic -194654 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 400.5-5 chr7 26017133 26017648 + 1.5 NA Intergenic L1PA14|LINE|L1 -67404 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 290.25-8 chr17 54482852 54483187 + 1.5 NA Intergenic Intergenic -417672 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 133-18 chr14 25800505 25800706 + 1.5 NA Intergenic Intergenic -750308 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 181.5-9 chr11 81206400 81206637 + 1.5 NA Intergenic MIR|SINE|MIR -443715 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 236-31 chr6 75390768 75391029 + 1.5 NA intron (NR_125859, intron 2 of 8) L2|LINE|L2 7712 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 148-48 chr4 116233638 116233759 + 1.5 NA Intergenic Intergenic -66027 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 240-17 chr2 220430100 220430360 + 1.5 NA Intergenic Intergenic -523665 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 190.5-72 chr8 135375371 135375526 + 1.5 NA Intergenic Intergenic -82008 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 180.5-88 chr8 107238819 107239028 + 1.5 NA Intergenic Intergenic 97592 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 193.5-55 chr4 120675800 120675964 + 1.5 NA Intergenic L1PB1|LINE|L1 246984 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 158.5-85 chr5 136605257 136605389 + 1.5 NA Intergenic Intergenic -239847 NM_020389 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 203.25-55 chr9 90337244 90337466 + 1.5 NA intron (NR_109795, intron 2 of 2) L1MCa|LINE|L1 96134 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 128.25-68 chr6 35557522 35557615 + 1.5 NA Intergenic MLT1N2|LTR|ERVL-MaLR -44672 NM_001289395 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 163.5-30 chr14 73626080 73626221 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 9306 NM_001037162 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 262.25-17 chr4 30307530 30307850 + 1.5 NA Intergenic L2c|LINE|L2 -412679 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 175.5-44 chr2 154160749 154160929 + 1.5 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 216445 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 150.5-64 chr4 38612691 38612810 + 1.5 NA TTS (NR_026804) TTS (NR_026804) 48747 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 168-38 chr2 39498959 39499163 + 1.5 NA intron (NR_037875, intron 3 of 5) Tigger14a|DNA|TcMar-Tigger 61645 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 115.5-101 chr8 129119971 129120063 + 1.5 NA Intergenic Intergenic 121223 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 210-22 chr3 7735330 7735611 + 1.5 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -200186 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 156.25-38 chr2 149928885 149929028 + 1.5 NA Intergenic L1MC4a|LINE|L1 -69765 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 212.5-30 chr20 23264598 23264784 + 1.5 NA Intergenic Intergenic -86100 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 128.75-59 chr3 90052161 90052321 + 1.5 NA Intergenic Intergenic 944620 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 158.5-104 chr8 136638202 136638398 + 1.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 107502 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 353-2 chr14 87056203 87056532 + 1.5 NA Intergenic Intergenic 150589 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 187.5-91 chrX 67346629 67346833 + 1.5 NA Intergenic MER45C|DNA|hAT-Tip100 -197290 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 248.25-27 chr4 87279846 87280158 + 1.5 NA Intergenic AluYi6|SINE|Alu 20581 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 318-6 chr14 25073787 25074103 + 1.5 NA Intergenic MIR|SINE|MIR -23648 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 156-28 chr14 50799572 50799712 + 1.5 NA intron (NM_016350, intron 4 of 28) intron (NM_016350, intron 4 of 28) -22155 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 233.5-36 chr3 107781897 107782206 + 1.5 NA intron (NM_020235, intron 13 of 16) intron (NM_020235, intron 13 of 16) 96017 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 330.5-6 chr2 159446632 159446935 + 1.5 NA exon (NM_013450, exon 6 of 37) exon (NM_013450, exon 6 of 37) -160080 NM_152528 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 220.5-41 chr6 115420166 115420368 + 1.5 NA Intergenic L1ME2z|LINE|L1 223568 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 331.5-7 chr4 102473384 102473777 + 1.5 NA intron (NR_136202, intron 1 of 4) L1MD1|LINE|L1 -27779 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 183.5-20 chr12 133032996 133033276 + 1.5 NA non-coding (NR_110091, exon 3 of 3) non-coding (NR_110091, exon 3 of 3) 4086 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 164-56 chr7 23555437 23555629 + 1.5 NA Intergenic L1MA4|LINE|L1 -23492 NM_001282757 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 298-8 chr14 47873851 47874169 + 1.5 NA Intergenic Intergenic -78996 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 338.5-11 chr8 88469519 88469898 + 1.5 NA Intergenic HAL1M8|LINE|L1 -142225 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 219.75-4 chr10 80665957 80666254 + 1.5 NA Intergenic Intergenic 16308 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 231-19 chr2 25747647 25747922 + 1.5 NA intron (NM_001369346, intron 10 of 10) intron (NM_001369346, intron 10 of 10) 46907 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 312 chr1 89078073 89078438 + 1.5 NA Intergenic L1PA15|LINE|L1 -13047 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 215.25-32 chr6 71408999 71409237 + 1.5 NA non-coding (NR_121614, exon 3 of 3) non-coding (NR_121614, exon 3 of 3) -5497 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 243.75-20 chr3 180841367 180841639 + 1.5 NA intron (NR_109986, intron 2 of 13) L1MA8|LINE|L1 28675 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 199.5-8 chr10 87864741 87864913 + 1.5 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 1202 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 216-24 chr2 181912153 181912312 + 1.5 NA intron (NM_006751, intron 9 of 16) L2c|LINE|L2 20502 NR_109843 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 354-5 chr18 3228963 3229341 + 1.5 NA Intergenic Intergenic -9044 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 154-38 chr2 31245323 31245465 + 1.5 NA intron (NM_014600, intron 2 of 5) MIRb|SINE|MIR 11242 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 238.5-38 chr8 84508496 84508683 + 1.5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 93105 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 242.25-33 chr9 85578566 85578885 + 1.5 NA intron (NM_015239, intron 24 of 25) intron (NM_015239, intron 24 of 25) 163304 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 280-24 chr7 127474250 127474607 + 1.5 NA Intergenic Intergenic -2455 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 154.5-12 chr10 49171909 49172035 + 1.5 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 16419 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 182.25-59 chr8 125108101 125108269 + 1.5 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 16325 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 155.75-69 chr8 115870289 115870445 + 1.5 NA Intergenic Intergenic -201392 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 261.75-21 chr4 10358449 10358732 + 1.5 NA Intergenic Intergenic 98836 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 160.75-38 chr20 12428975 12429102 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie 507925 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 224.25-29 chr8 106748697 106748959 + 1.5 NA intron (NM_181354, intron 13 of 13) AluSq2|SINE|Alu 21416 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 333.5 chr1 33863939 33864294 + 1.5 NA promoter-TSS (NM_001352984) promoter-TSS (NM_001352984) 37 NM_001352984 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 136.5-51 chr2 25402141 25402305 + 1.5 NA intron (NM_001351385, intron 14 of 17) intron (NM_001351385, intron 14 of 17) -59633 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 189-55 chr9 124782616 124782781 + 1.5 NA intron (NM_182487, intron 1 of 7) intron (NM_182487, intron 1 of 7) 5565 NM_182487 169611 Hs.357004 NM_182487 ENSG00000185585 OLFML2A PRO34319 olfactomedin like 2A protein-coding 145.25-14 chr10 102491200 102491420 + 1.5 NA intron (NM_005736, intron 1 of 10) intron (NM_005736, intron 1 of 10) 11402 NM_005736 10121 Hs.153961 NM_005736 ENSG00000138107 ACTR1A ARP1|Arp1A|CTRN1 actin related protein 1A protein-coding 260.5-13 chr17 62114106 62114333 + 1.5 NA Intergenic L1MEd|LINE|L1 -48941 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 261-10 chr12 103798837 103799065 + 1.5 NA intron (NM_001031701, intron 4 of 13) MIR|SINE|MIR 42283 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 214.5-53 chr6 63688465 63688756 + 1.5 NA intron (NM_001370349, intron 3 of 14) AluSx|SINE|Alu 42084 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 316-5 chr10 103022345 103022753 + 1.5 NA intron (NM_199076, intron 1 of 6) MER63A|DNA|hAT-Blackjack -104214 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 175-52 chr6 111344500 111344744 + 1.5 NA intron (NM_001286431, intron 23 of 34) intron (NM_001286431, intron 23 of 34) 85283 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 132.75-85 chr6 28214132 28214262 + 1.5 NA Intergenic L1ME4b|LINE|L1 4732 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 230.5-19 chr15 92235030 92235233 + 1.5 NA Intergenic L1PB3|LINE|L1 -158750 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 542.5 chr14 54795261 54795944 + 1.5 NA Intergenic Intergenic 40769 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 309-20 chr7 36821254 36821700 + 1.5 NA Intergenic MLT2B1|LTR|ERVL -96928 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 165.75-49 chr4 60372436 60372628 + 1.5 NA Intergenic L1MB3|LINE|L1 -550087 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 313.5-20 chr9 130662920 130663233 + 1.5 NA Intergenic CpG -1518 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding 311.5-5 chr2 47734814 47735236 + 1.5 NA Intergenic Tigger5|DNA|TcMar-Tigger -48057 NM_001281492 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 140.5-47 chr2 118173067 118173233 + 1.5 NA Intergenic Intergenic 13236 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 196-12 chr12 23706524 23706989 + 1.5 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -122170 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 284.75-3 chr13 61812264 61812651 + 1.5 NA Intergenic Intergenic 217091 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 184-38 chr4 28945683 28945839 + 1.5 NA Intergenic L1PA16|LINE|L1 -51023 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 207-24 chr2 23458093 23458346 + 1.5 NA intron (NM_052920, intron 1 of 13) intron (NM_052920, intron 1 of 13) 73040 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 236-16 chr17 79019690 79019850 + 1.5 NA intron (NR_040019, intron 2 of 2) intron (NR_040019, intron 2 of 2) -3164 NM_153372 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 282.75-11 chr3 43360655 43360921 + 1.5 NA Intergenic MER46C|DNA|TcMar-Tigger -8826 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 255-13 chr18 10712375 10712698 + 1.5 NA intron (NM_022068, intron 36 of 51) intron (NM_022068, intron 36 of 51) 47113 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 235.5-24 chr18 2516365 2516576 + 1.5 NA Intergenic Intergenic 55035 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 252.5-23 chr21 16159734 16160083 + 1.5 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) -21490 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 249-14 chr17 69929512 69929832 + 1.5 NA Intergenic Intergenic -32035 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 221.5-40 chr6 67454074 67454277 + 1.5 NA Intergenic Intergenic -601176 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 141.75-51 chr21 45045224 45045395 + 1.5 NA Intergenic L1MC1|LINE|L1 27902 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 177-2 chr1 173447031 173447160 + 1.5 NA intron (NR_125960, intron 1 of 1) L1MC1|LINE|L1 14267 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 271.25-8 chr3 7491966 7492260 + 1.5 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 43171 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 452.25 chr17 56186222 56186555 + 1.5 NA intron (NM_001365758, intron 2 of 20) MIRc|SINE|MIR 32913 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 193-48 chr8 83308059 83308359 + 1.5 NA Intergenic Intergenic -95549 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 166.5-35 chr15 24295351 24295471 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -125463 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 191.5-17 chr12 14608289 14608484 + 1.5 NA intron (NR_120465, intron 2 of 5) L1M1|LINE|L1 -40503 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 174.75-39 chr4 82252880 82253043 + 1.5 NA Intergenic Intergenic 121030 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 185.25-21 chr18 11226017 11226202 + 1.5 NA Intergenic LTR37A|LTR|ERV1 -77347 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 380.25-2 chr8 83177695 83178058 + 1.5 NA Intergenic Intergenic -225882 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 293.25-10 chr2 175450477 175450752 + 1.5 NA Intergenic Intergenic -268904 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 172.75-47 chr8 106734472 106734671 + 1.5 NA intron (NM_001198535, intron 1 of 5) intron (NM_001198535, intron 1 of 5) 8464 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 150.5-50 chr2 168682930 168683166 + 1.5 NA intron (NM_001256126, intron 4 of 10) intron (NM_001256126, intron 4 of 10) 100105 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 262.25-5 chr12 9212518 9212979 + 1.5 NA Intergenic Intergenic -4353 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 114.25-21 chr11 87454840 87455071 + 1.5 NA Intergenic ORSL-2a|DNA|hAT-Tip100 264456 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 262.75-3 chr10 48706457 48706796 + 1.5 NA intron (NM_020945, intron 1 of 61) intron (NM_020945, intron 1 of 61) 21163 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 158.5-63 chr22 26676239 26676451 + 1.5 NA non-coding (NR_003491, exon 5 of 5) non-coding (NR_003491, exon 5 of 5) 3502 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 180-39 chr2 155170025 155170238 + 1.5 NA Intergenic Intergenic 471436 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 129.75-20 chr13 48387570 48387744 + 1.5 NA intron (NM_000321, intron 17 of 26) L1MB8|LINE|L1 25456 NM_001162498 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 176.5-79 chr7 19220148 19220382 + 1.5 NA Intergenic Intergenic -74844 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 349.75 chr14 87458042 87458300 + 1.5 NA Intergenic Intergenic 197123 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 302.25-14 chr8 71472481 71472788 + 1.5 NA intron (NM_001370334, intron 2 of 19) MIR|SINE|MIR 75070 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 311.75-7 chr2 73493049 73493333 + 1.5 NA intron (NM_015120, intron 10 of 22) MIRb|SINE|MIR 36088 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 182.75-31 chr3 129104412 129104643 + 1.5 NA intron (NM_001204890, intron 11 of 12) intron (NM_001204890, intron 11 of 12) 17277 NM_198490 339122 Hs.381132 NM_198490 ENSG00000172780 RAB43 RAB11B|RAB41 RAB43, member RAS oncogene family protein-coding 327-5 chr13 28371445 28371822 + 1.5 NA intron (NM_001160030, intron 14 of 14) Tigger7|DNA|TcMar-Tigger 123495 NM_001160031 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 249.75-10 chr14 69093116 69093320 + 1.5 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 59381 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 341-9 chr8 87209536 87209837 + 1.5 NA intron (NM_173538, intron 5 of 10) L1M2|LINE|L1 343271 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 224.25-30 chr8 110492289 110492635 + 1.5 NA Intergenic Intergenic -516691 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 345.75-3 chr2 193239678 193239982 + 1.5 NA Intergenic L1MC3|LINE|L1 489985 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 188.25-56 chr7 49714475 49714696 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -59053 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 296.5-6 chr10 130339468 130339691 + 1.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 203170 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 223.5-20 chr12 10495778 10496074 + 1.5 NA Intergenic Intergenic -9967 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 306-14 chr2 19577488 19577796 + 1.5 NA Intergenic Tigger19a|DNA|TcMar-Tigger -219019 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 371-6 chr8 8889750 8890166 + 1.5 NA intron (NM_004225, intron 1 of 2) intron (NM_004225, intron 1 of 2) 3672 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 172.75-19 chr2 14038147 14038348 + 1.5 NA Intergenic L2c|LINE|L2 362711 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 323.5-14 chr8 28150357 28150767 + 1.5 NA intron (NM_018091, intron 10 of 14) L1MCa|LINE|L1 57423 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 241-34 chr8 144577291 144577616 + 1.5 NA intron (NM_025251, intron 2 of 10) L1M3|LINE|L1 28242 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 210.5-59 chr8 131811460 131811620 + 1.5 NA Intergenic Intergenic -92553 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 156-57 chr5 144165850 144165971 + 1.5 NA intron (NM_001271732, intron 1 of 4) intron (NM_001271732, intron 1 of 4) 4749 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 369.25-3 chr3 9271017 9271364 + 1.5 NA Intergenic AluSz6|SINE|Alu 21434 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 242.5-35 chr8 110024099 110024270 + 1.5 NA Intergenic Intergenic -48413 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 206.5-35 chr22 36920655 36920812 + 1.5 NA intron (NM_000395, intron 1 of 13) intron (NM_000395, intron 1 of 13) 7105 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 253-5 chr10 6673950 6674226 + 1.5 NA Intergenic Intergenic 39018 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 244.25-17 chr3 74143507 74143777 + 1.5 NA Intergenic Intergenic 334398 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 170.5-23 chr12 63960087 63960315 + 1.5 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 115501 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 262.5-37 chr8 82571139 82571455 + 1.5 NA Intergenic L1MEc|LINE|L1 -340807 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 146.25-54 chr4 59454150 59454264 + 1.5 NA Intergenic Intergenic 440634 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 301.5-20 chr8 121039301 121039567 + 1.5 NA Intergenic Intergenic -227388 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 216.75-14 chr12 126411517 126411758 + 1.5 NA intron (NR_147498, intron 2 of 3) intron (NR_147498, intron 2 of 3) -14509 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 188.5-20 chr16 21568295 21568444 + 1.5 NA Intergenic Intergenic -28852 NM_001288660 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 287.5-3 chr10 11149435 11149657 + 1.5 NA intron (NM_001326334, intron 2 of 13) intron (NM_001326334, intron 2 of 13) -15335 NM_001326348 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 286.25-17 chr8 80537337 80537542 + 1.5 NA Intergenic L1ME4c|LINE|L1 51213 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 218.75-17 chr15 57668429 57668747 + 1.5 NA intron (NR_104369, intron 11 of 12) L1ME2|LINE|L1 -37933 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 275-10 chr3 114340896 114341246 + 1.5 NA intron (NR_121662, intron 6 of 6) intron (NR_121662, intron 6 of 6) -10740 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 256.5-23 chr2 197211870 197212102 + 1.5 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 13995 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 134-16 chr11 38681622 38681799 + 1.5 NA Intergenic Intergenic 32852 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 481.75-2 chr19 57560695 57561215 + 1.5 NA Intergenic MER41G|LTR|ERV1 -1092 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 147.25-56 chr5 115471136 115471330 + 1.5 NA Intergenic Intergenic 73542 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 227-18 chr2 78736042 78736333 + 1.5 NA Intergenic Intergenic 190656 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 166.5-64 chr3 108449896 108450129 + 1.5 NA intron (NM_014981, intron 22 of 41) L1MA9|LINE|L1 79310 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 290.5-23 chr7 90389955 90390235 + 1.5 NA 3' UTR (NM_033107, exon 10 of 10) 3' UTR (NM_033107, exon 10 of 10) -6197 NR_102424 101409256 NR_102424 LOC101409256 - cell division cycle 42 pseudogene pseudo 178-48 chr7 56184802 56184939 + 1.5 NA Intergenic AluJr|SINE|Alu -68453 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 264-22 chr4 82235912 82236246 + 1.5 NA Intergenic L1ME3D|LINE|L1 137912 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 323.5-10 chr6 36404788 36405210 + 1.5 NA intron (NM_152990, intron 3 of 4) Tigger3b|DNA|TcMar-Tigger -17199 NM_001207037 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 210-2 chr1 215539210 215539363 + 1.5 NA Intergenic LTR57-int|LTR|ERVL -28018 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 122.75-77 chr7 39811122 39811277 + 1.5 NA Intergenic Intergenic 77631 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 191.75-48 chr9 106518945 106519227 + 1.5 NA Intergenic L1MDa|LINE|L1 -81842 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 203.75-28 chr21 29322891 29323121 + 1.5 NA intron (NM_206866, intron 2 of 4) (TGCA)n|Simple_repeat|Simple_repeat 17802 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 307.25-2 chr12 3057928 3058288 + 1.5 NA Intergenic Intergenic -19247 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 234.5-14 chr14 65615462 65615738 + 1.5 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 144498 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 276-6 chr16 64910432 64910751 + 1.5 NA Intergenic Intergenic 211472 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 182.75-52 chr7 17392528 17392878 + 1.5 NA intron (NR_110015, intron 1 of 2) L2a|LINE|L2 17786 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 131.75-56 chr4 32971846 32971968 + 1.5 NA Intergenic Intergenic 620869 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 261-32 chr4 28596838 28597075 + 1.5 NA Intergenic THE1C|LTR|ERVL-MaLR -222626 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 259-3 chr1 177497589 177497877 + 1.5 NA Intergenic L1M1|LINE|L1 146147 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 221-30 chr3 177799715 177799889 + 1.5 NA Intergenic Intergenic -17063 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 372.25-2 chr5 98969233 98969629 + 1.5 NA intron (NR_151718, intron 1 of 3) MLT1K|LTR|ERVL-MaLR -39717 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 195.75-9 chr12 38698647 38698880 + 1.5 NA intron (NM_153634, intron 14 of 19) L1MB8|LINE|L1 206828 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 230.25 chr1 13731955 13732157 + 1.5 NA intron (NM_012231, intron 3 of 9) MIR3|SINE|MIR -17359 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 330.5-12 chr7 28359684 28360058 + 1.5 NA intron (NM_182899, intron 1 of 9) L1MA7|LINE|L1 -52647 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 182.75-43 chr5 68684805 68685212 + 1.5 NA Intergenic L2a|LINE|L2 344919 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 276.5-5 chr2 20859866 20860252 + 1.5 NA Intergenic Intergenic -36929 NM_001282723 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 280.5-21 chr5 158218888 158219209 + 1.5 NA Intergenic MIR|SINE|MIR 190725 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 181.5-46 chr3 131473387 131473589 + 1.5 NA intron (NM_007208, intron 6 of 9) L1MA6|LINE|L1 5745 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 145.5-90 chr7 87480958 87481141 + 1.5 NA Intergenic MIR|SINE|MIR -5346 NM_018850 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 220-19 chr2 227645958 227646205 + 1.5 NA Intergenic AluJr|SINE|Alu -12761 NM_020161 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 133.75-42 chr2 77150343 77150436 + 1.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 164424 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 332-8 chr20 59500247 59500524 + 1.5 NA Intergenic L1MEf|LINE|L1 -77124 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 237-37 chr8 122765834 122766113 + 1.5 NA Intergenic L1MD2|LINE|L1 -15682 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 236-30 chr5 95375431 95375588 + 1.5 NA Intergenic Intergenic -15857 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 207-26 chr2 50943735 50943982 + 1.5 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 88274 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 263-18 chr4 41891329 41891661 + 1.5 NA Intergenic Intergenic -8884 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 226.5-30 chr2 160355916 160356153 + 1.5 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) 51848 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 238.25 chr1 51646082 51646403 + 1.5 NA intron (NM_148906, intron 1 of 22) L1M4|LINE|L1 29150 NM_001350209 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 196-46 chr9 135321950 135322218 + 1.5 NA Intergenic Intergenic -21165 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 153.5-97 chr9 26239155 26239331 + 1.5 NA Intergenic Intergenic 172568 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 248.25-15 chr2 178002512 178002726 + 1.5 NA intron (NM_001077197, intron 3 of 20) LTR82A|LTR|ERVL 70158 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 196.5-54 chr5 7521627 7521782 + 1.5 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 125566 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 280 chr1 55238151 55238485 + 1.5 NA Intergenic Intergenic 12677 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 210.75-40 chrX 70886534 70886695 + 1.5 NA intron (NM_031276, intron 2 of 29) intron (NM_031276, intron 2 of 29) 22097 NM_031276 56159 Hs.121776 NM_031276 ENSG00000120498 TEX11 SPGFX2|TGC1|TSGA3 testis expressed 11 protein-coding 286-2 chr1 108684171 108684382 + 1.5 NA Intergenic Charlie2b|DNA|hAT-Charlie -8034 NM_001349768 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 203.75-14 chr16 61799432 61799658 + 1.5 NA intron (NM_001796, intron 7 of 11) MIR|SINE|MIR 236893 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 144-64 chr6 115738262 115738380 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -94486 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 178-55 chr8 138710769 138710974 + 1.5 NA intron (NM_152888, intron 30 of 64) intron (NM_152888, intron 30 of 64) 203170 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 214.5-67 chrX 147772562 147772850 + 1.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 139111 NR_024501 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 308.5-12 chr7 19083960 19084302 + 1.5 NA Intergenic L1MB8|LINE|L1 33505 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 256.5-31 chr5 62536488 62536706 + 1.5 NA intron (NM_016338, intron 22 of 29) intron (NM_016338, intron 22 of 29) -42138 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 146.25-4 chr1 96600426 96600545 + 1.5 NA Intergenic Intergenic -121120 NM_001300988 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 347.5-12 chr5 55156839 55157207 + 1.5 NA intron (NM_001145734, intron 2 of 10) intron (NM_001145734, intron 2 of 10) -3148 NR_131338 493869 Hs.289044 NM_001008397 ENSG00000164294 GPX8 EPLA847|GPx-8|GSHPx-8|UNQ847 glutathione peroxidase 8 (putative) protein-coding 129-85 chr9 31869996 31870115 + 1.5 NA Intergenic L1MA5A|LINE|L1 -488565 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 173 chr1 44334254 44334403 + 1.5 NA intron (NM_001301701, intron 2 of 7) intron (NM_001301701, intron 2 of 7) 20929 NM_024066 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 222.75-24 chr2 188898605 188898886 + 1.5 NA Intergenic Intergenic -75628 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 138.5-67 chr22 40075770 40075998 + 1.5 NA intron (NM_001024843, intron 1 of 23) L1MEc|LINE|L1 31067 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 127.5-111 chr6 90373147 90373284 + 1.5 NA Intergenic Intergenic 60473 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 220.25-16 chr15 92963840 92964131 + 1.5 NA intron (NM_001271, intron 16 of 38) intron (NM_001271, intron 16 of 38) 59586 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 266-21 chr9 92564867 92565099 + 1.5 NA intron (NM_001286969, intron 4 of 6) L1MC5a|LINE|L1 -28891 NM_001197296 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 318-24 chr8 83857240 83857473 + 1.5 NA Intergenic Intergenic -325431 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 247.5-24 chr4 137024575 137024764 + 1.5 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -169087 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 255.75-22 chr5 141164275 141164468 + 1.5 NA Intergenic L1MC4|LINE|L1 -8273 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 346.75-3 chr2 203788761 203789072 + 1.5 NA Intergenic Intergenic -78855 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 138.25-3 chr1 88402753 88402880 + 1.5 NA Intergenic Intergenic -281328 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 227.5-25 chr19 36717893 36718197 + 1.5 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 14364 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 147.5-17 chr12 326332 326441 + 1.5 NA intron (NM_001042603, intron 14 of 27) intron (NM_001042603, intron 14 of 27) 62934 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 179.5-50 chr18 26862169 26862402 + 1.5 NA exon (NM_001317387, exon 2 of 4) exon (NM_001317387, exon 2 of 4) 625 NM_001364289 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 228-38 chr6 113500071 113500492 + 1.5 NA Intergenic (AGTAAT)n|Simple_repeat|Simple_repeat -66834 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 126.5-39 chr15 98938451 98938543 + 1.5 NA intron (NM_000875, intron 17 of 20) intron (NM_000875, intron 17 of 20) 67159 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 140.5-15 chr12 45075836 45076000 + 1.5 NA Intergenic L2|LINE|L2 -10507 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 260.5-22 chr3 97381728 97382002 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -57742 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 169.5-30 chr16 3578323 3578535 + 1.5 NA Intergenic Intergenic -1026 NR_075083 197358 Hs.592091 NM_178844 ENSG00000167984 NLRC3 CLR16.2|NOD3 NLR family CARD domain containing 3 protein-coding 214.25-34 chr5 16485440 16485592 + 1.5 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -19716 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 165.5-77 chr6 142407779 142407994 + 1.5 NA intron (NM_198569, intron 15 of 24) intron (NM_198569, intron 15 of 24) 105879 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 201.5-41 chr4 68254260 68254490 + 1.5 NA Intergenic Intergenic -8681 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 170.25-53 chr5 36603633 36603792 + 1.5 NA Intergenic Intergenic -2643 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 204.75-5 chr11 41233052 41233264 + 1.5 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 226478 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 244.5-36 chr7 104710187 104710380 + 1.5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 93809 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 286.75 chr11 110432652 110432998 + 1.5 NA intron (NM_004109, intron 1 of 3) intron (NM_004109, intron 1 of 3) 2877 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 256-7 chr11 19762122 19762458 + 1.5 NA intron (NM_182964, intron 1 of 37) L2a|LINE|L2 -2207 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 318-2 chr1 147449345 147449577 + 1.5 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 68414 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 139-35 chr2 128026041 128026156 + 1.5 NA intron (NM_001330303, intron 2 of 19) intron (NM_001330303, intron 2 of 19) 1197 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 325.75 chr1 177057099 177057378 + 1.5 NA intron (NM_207108, intron 2 of 21) intron (NM_207108, intron 2 of 21) -27793 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 162.5-81 chr6 159587156 159587349 + 1.5 NA Intergenic L1MEj|LINE|L1 105989 NM_001322815 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 164.75-2 chr1 167463742 167463895 + 1.5 NA intron (NM_000734, intron 1 of 7) intron (NM_000734, intron 1 of 7) 54711 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 151.5-72 chr6 22898272 22898470 + 1.5 NA Intergenic Intergenic -180447 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 120-76 chr5 139171808 139171964 + 1.5 NA intron (NM_022464, intron 1 of 9) L1M4c|LINE|L1 26482 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 244.5-37 chr7 135024460 135024760 + 1.5 NA intron (NR_144293, intron 4 of 10) L1P4a|LINE|L1 38102 NM_178563 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 220-38 chrX 137449555 137449834 + 1.5 NA Intergenic L2c|LINE|L2 -116433 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 168-31 chr16 35465191 35465372 + 1.5 NA Intergenic HERVL40-int|LTR|ERVL 15315 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 223.5-72 chr7 22765626 22765934 + 1.5 NA Intergenic Tigger9a|DNA|TcMar-Tigger -38160 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 266.25-5 chr11 93957977 93958186 + 1.5 NA Intergenic Intergenic -63273 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 292-2 chr10 91609593 91609995 + 1.5 NA intron (NR_024467, intron 1 of 4) L1MA7|LINE|L1 1666 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 242.5-31 chr5 43155143 43155400 + 1.5 NA intron (NM_003432, intron 4 of 7) HERVL40-int|LTR|ERVL 33706 NM_001330713 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 242-17 chr15 59616372 59616804 + 1.5 NA intron (NM_004751, intron 1 of 2) intron (NM_004751, intron 1 of 2) 4805 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 304.5-18 chr9 107054369 107054613 + 1.5 NA intron (NR_126029, intron 4 of 4) MLT1K|LTR|ERVL-MaLR 48497 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 152.25-10 chr10 58397112 58397253 + 1.5 NA non-coding (NR_073073, exon 8 of 8) non-coding (NR_073073, exon 8 of 8) 11772 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 369.5-3 chr22 46234594 46235008 + 1.5 NA intron (NM_001001928, intron 7 of 7) intron (NM_001001928, intron 7 of 7) 15492 NM_207327 150383 Hs.103110 NM_207327 ENSG00000205643 CDPF1 C22orf40 cysteine rich DPF motif domain containing 1 protein-coding 211.5-37 chr5 10711112 10711393 + 1.5 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 49982 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 117.75-55 chr3 82673753 82673883 + 1.5 NA Intergenic Intergenic 687676 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 129.5-24 chr13 42082371 42082573 + 1.5 NA intron (NM_178009, intron 1 of 29) intron (NM_178009, intron 1 of 29) 33824 NM_178009 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 274.75-3 chr14 30110050 30110341 + 1.5 NA Intergenic Intergenic -182348 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 166-9 chr10 113081706 113081858 + 1.5 NA intron (NM_001198528, intron 4 of 14) intron (NM_001198528, intron 4 of 14) 36427 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 301.25-2 chr2 69382289 69382739 + 1.5 NA intron (NM_002056, intron 1 of 18) intron (NM_002056, intron 1 of 18) 4713 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 212.75-20 chr21 28732340 28732514 + 1.5 NA Intergenic Intergenic 152940 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 141.75-39 chr2 11891250 11891387 + 1.5 NA Intergenic MIRc|SINE|MIR -54332 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 219.25-8 chr10 117496469 117496775 + 1.5 NA intron (NR_002791, intron 2 of 3) L2a|LINE|L2 -45823 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 187 chr1 205945096 205945323 + 1.5 NA intron (NR_110983, intron 2 of 3) intron (NR_110983, intron 2 of 3) -1749 NM_134325 115019 Hs.164073 NM_052934 ENSG00000174502 SLC26A9 - solute carrier family 26 member 9 protein-coding 160.75-58 chr6 169298044 169298400 + 1.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -44108 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 271-2 chr1 66086374 66086570 + 1.5 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -35754 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 208.75-2 chr1 49821463 49821703 + 1.5 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 202371 NR_136623 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 248-3 chr11 29749130 29749446 + 1.5 NA Intergenic Intergenic 130486 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 194-46 chrX 102973873 102974129 + 1.5 NA Intergenic L1PA16|LINE|L1 36729 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 311.5 chr1 92769951 92770223 + 1.5 NA intron (NM_001308248, intron 1 of 18) MLT1D|LTR|ERVL-MaLR 15021 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 138.75-48 chr3 183339760 183339974 + 1.5 NA intron (NM_015078, intron 4 of 29) MER5B|DNA|hAT-Charlie 86614 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 264-3 chr10 77098227 77098537 + 1.5 NA intron (NM_001271519, intron 9 of 28) intron (NM_001271519, intron 9 of 28) -42449 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 365-9 chrX 86662977 86663367 + 1.5 NA intron (NM_001139515, intron 4 of 11) intron (NM_001139515, intron 4 of 11) 400204 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 127.5-36 chr14 64543096 64543268 + 1.5 NA TTS (NM_021979) TTS (NM_021979) 2714 NM_021979 3306 Hs.432648 NM_021979 ENSG00000126803 HSPA2 HSP70-2|HSP70-3 heat shock protein family A (Hsp70) member 2 protein-coding 245.5-21 chr3 98946177 98946450 + 1.5 NA Intergenic Intergenic -44618 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 171-22 chr14 43898234 43898429 + 1.5 NA Intergenic MIR|SINE|MIR 608952 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 256.5-35 chr5 140117679 140118021 + 1.5 NA 3' UTR (NM_005859, exon 1 of 1) 3' UTR (NM_005859, exon 1 of 1) 3741 NM_005859 5813 Hs.443121 NM_005859 ENSG00000185129 PURA MRD31|PUR-ALPHA|PUR1|PURALPHA purine rich element binding protein A protein-coding 172.5-19 chr15 99966160 99966300 + 1.5 NA Intergenic LTR62|LTR|ERVL 159207 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 188-52 chr9 133764815 133764952 + 1.5 NA intron (NM_001134398, intron 29 of 29) L1MEg|LINE|L1 -24928 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 231.75-17 chr20 14006599 14006850 + 1.5 NA intron (NM_001351663, intron 2 of 17) L1MC5a|LINE|L1 11208 NM_001351663 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 216-4 chr10 17059658 17059889 + 1.5 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 70044 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 287-16 chr5 133946432 133946645 + 1.5 NA Intergenic Intergenic 22087 NM_020199 56951 Hs.744034 NM_020199 ENSG00000113583 C5orf15 HTGN29|KCT2 chromosome 5 open reading frame 15 protein-coding 153-5 chr10 107191208 107191436 + 1.5 NA Intergenic Intergenic -26616 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 198-37 chr4 113123363 113123622 + 1.5 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) 6795 NM_001354237 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 279-12 chr2 200707742 200708036 + 1.5 NA intron (NR_135011, intron 2 of 31) Tigger12|DNA|TcMar-Tigger 12166 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 244.75-30 chrX 97328320 97328622 + 1.5 NA intron (NM_007309, intron 23 of 26) intron (NM_007309, intron 23 of 26) 236064 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 158.25-37 chr3 176179118 176179246 + 1.5 NA Intergenic L1MA3|LINE|L1 -65369 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 184.75-39 chr22 41175604 41175792 + 1.5 NA intron (NM_001429, intron 29 of 30) intron (NM_001429, intron 29 of 30) 21803 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 285.25-9 chr2 76552809 76553042 + 1.5 NA Intergenic Intergenic -433040 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 229.25-5 chr11 30262513 30262786 + 1.5 NA Intergenic L1ME1|LINE|L1 31635 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 280.5-17 chr20 53868852 53869113 + 1.5 NA Intergenic (TAATATA)n|Simple_repeat|Simple_repeat 6727 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 197.5-65 chr9 125437011 125437224 + 1.5 NA TTS (NM_001006620) TTS (NM_001006620) 175291 NM_001354294 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 306-18 chr3 178631691 178632094 + 1.5 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 73042 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 136.5-58 chr2 129087485 129087581 + 1.5 NA Intergenic Intergenic 186358 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 468 chr10 97932885 97933356 + 1.5 NA intron (NM_001206528, intron 3 of 14) intron (NM_001206528, intron 3 of 14) -57223 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 221-49 chr8 120141748 120142036 + 1.5 NA intron (NM_021110, intron 1 of 47) intron (NM_021110, intron 1 of 47) 16790 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 383.5-7 chr2 14666542 14667045 + 1.5 NA Intergenic Intergenic 34076 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 263-27 chr8 89105127 89105464 + 1.5 NA Intergenic Intergenic 652416 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 205.75-38 chr6 146771951 146772213 + 1.5 NA intron (NM_024694, intron 29 of 35) (AATCATA)n|Simple_repeat|Simple_repeat 31742 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 240.25-20 chr3 123794363 123794778 + 1.5 NA intron (NM_001321309, intron 3 of 32) MIR3|SINE|MIR 89762 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 187.5-8 chr10 34404296 34404596 + 1.5 NA intron (NM_001184791, intron 4 of 20) AluJb|SINE|Alu 410850 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 321.75 chr11 75205540 75205871 + 1.5 NA 3' UTR (NM_001145212, exon 11 of 11) 3' UTR (NM_001145212, exon 11 of 11) -35069 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 145-16 chr14 28269811 28269936 + 1.5 NA Intergenic L1PREC2|LINE|L1 495446 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 239-7 chr10 1255333 1255598 + 1.5 NA intron (NM_018702, intron 4 of 9) intron (NM_018702, intron 4 of 9) 95697 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 182.5-9 chr1 230324198 230324360 + 1.5 NA intron (NM_001258311, intron 6 of 6) intron (NM_001258311, intron 6 of 6) 102053 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 198-22 chr2 3853102 3853345 + 1.5 NA Intergenic L1M4|LINE|L1 120809 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 236.5-32 chr3 88378921 88379133 + 1.5 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 40571 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 186-7 chr10 82989646 82989797 + 1.5 NA Intergenic Intergenic 687368 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 211.5-44 chr6 40697483 40697711 + 1.5 NA Intergenic Intergenic -110233 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 137-62 chr6 149431434 149431582 + 1.5 NA Intergenic L1M5|LINE|L1 31246 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 240-5 chr10 131642294 131642604 + 1.5 NA Intergenic Intergenic 147750 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 191-8 chr10 122864475 122864650 + 1.5 NA intron (NM_152644, intron 1 of 3) L1MC2|LINE|L1 15019 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 197.5-67 chrX 57003142 57003380 + 1.5 NA Intergenic L1M3e|LINE|L1 -7720 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 209.75-40 chr7 57285202 57285581 + 1.5 NA Intergenic L1PB4|LINE|L1 -63217 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 150.5-42 chr2 34349250 34349457 + 1.5 NA Intergenic Intergenic 282127 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 189.5-22 chr18 2588463 2588665 + 1.5 NA intron (NM_006101, intron 8 of 16) intron (NM_006101, intron 8 of 16) 17007 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 279-7 chr15 94569107 94569374 + 1.5 NA Intergenic AluSp|SINE|Alu 213310 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 166-21 chr13 102814603 102814807 + 1.5 NA intron (NM_017693, intron 3 of 10) intron (NM_017693, intron 3 of 10) 7559 NM_001204425 100533467 Hs.258429 NM_001204425 ENSG00000134899 BIVM-ERCC5 ERCC5-202 BIVM-ERCC5 readthrough protein-coding 372.75-2 chr17 56268342 56268638 + 1.5 NA intron (NM_001370326, intron 3 of 20) L1P4|LINE|L1 115015 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 294 chr1 33917331 33917637 + 1.5 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 48528 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 275.25-8 chr15 94112802 94113061 + 1.5 NA Intergenic L1M2|LINE|L1 -4993 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 230.5-16 chr14 43434578 43434790 + 1.5 NA Intergenic Tigger3|DNA|TcMar-Tigger 1072599 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 224-6 chr11 105595297 105595457 + 1.5 NA Intergenic L1MC3|LINE|L1 -14696 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 323.25-5 chr17 43080450 43080805 + 1.5 NA intron (NM_007300, intron 12 of 23) AluJo|SINE|Alu 43488 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 183-25 chr14 70329309 70329494 + 1.5 NA intron (NM_001202549, intron 3 of 4) intron (NM_001202549, intron 3 of 4) 30282 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 266.25-15 chr20 49213808 49214324 + 1.5 NA intron (NM_001319135, intron 1 of 14) AluSx|SINE|Alu -5229 NM_017895 55661 Hs.65234 NM_017895 ENSG00000124228 DDX27 DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1 DEAD-box helicase 27 protein-coding 337.5-11 chr7 107916737 107917017 + 1.5 NA exon (NM_001289751, exon 9 of 13) exon (NM_001289751, exon 9 of 13) 25694 NM_000108 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 186.75-44 chr5 7430359 7430559 + 1.5 NA intron (NM_020546, intron 2 of 24) L1MEc|LINE|L1 34321 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 216-44 chr9 79722438 79722647 + 1.5 NA exon (NM_001282760, exon 19 of 21) exon (NM_001282760, exon 19 of 21) -101988 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 123-10 chr10 67868842 67868956 + 1.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -15757 NM_012238 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 274-10 chr15 56608387 56608731 + 1.5 NA Intergenic L1MEf|LINE|L1 125527 NM_001288588 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 232.5-15 chr14 63484906 63485139 + 1.5 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 23216 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 134.5-60 chr3 96599357 96599460 + 1.5 NA Intergenic L1M5|LINE|L1 -215186 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 186-3 chr1 52043926 52044154 + 1.5 NA intron (NM_015913, intron 1 of 6) intron (NM_015913, intron 1 of 6) -6878 NR_126385 104355143 Hs.603708 NR_126385 ENSG00000228369 TXNDC12-AS1 - TXNDC12 antisense RNA 1 ncRNA 249.25-3 chr12 39277252 39277618 + 1.5 NA Intergenic Intergenic 165685 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 139.5-97 chr7 8850366 8850491 + 1.5 NA Intergenic MIRb|SINE|MIR 416819 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 198.75-10 chr13 66802130 66802314 + 1.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -22947 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 272-10 chr15 65678635 65678861 + 1.5 NA intron (NM_005848, intron 22 of 31) AluJb|SINE|Alu 18188 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 141-32 chr18 33514847 33515004 + 1.5 NA Intergenic L1MEg|LINE|L1 -63294 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 262-11 chr11 107387888 107388220 + 1.5 NA intron (NM_152434, intron 12 of 17) L2a|LINE|L2 69792 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 264-10 chr18 6178356 6178629 + 1.5 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -78252 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 130.5-9 chr1 186786018 186786125 + 1.5 NA Intergenic L1ME2|LINE|L1 -42829 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 262.5-10 chr15 95919105 95919374 + 1.5 NA Intergenic Intergenic 208602 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 181.5-69 chr7 118440438 118440586 + 1.5 NA Intergenic L1PREC2|LINE|L1 215808 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 292.5-14 chr6 36259213 36259537 + 1.5 NA intron (NM_173676, intron 1 of 7) intron (NM_173676, intron 1 of 7) -11085 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 189.5-43 chr4 49105615 49105868 + 1.5 NA Intergenic (CATTC)n|Satellite|Satellite 119099 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 258-8 chr10 124041001 124041269 + 1.5 NA intron (NM_014863, intron 4 of 5) intron (NM_014863, intron 4 of 5) 51271 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 345.5-3 chr19 33763694 33764074 + 1.5 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) -32986 NM_001129994 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 279 chr1 32018982 32019345 + 1.5 NA intron (NR_073498, intron 1 of 8) L1ME3F|LINE|L1 5295 NR_073498 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 190.5-68 chr7 6187701 6187913 + 1.5 NA intron (NM_001367581, intron 2 of 13) intron (NM_001367581, intron 2 of 13) -15670 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 176.5-35 chr17 6172771 6172915 + 1.5 NA Intergenic Intergenic 102229 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 173-47 chr6 52376342 52376670 + 1.5 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) 14355 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 214-37 chr5 116602664 116602889 + 1.5 NA intron (NR_147170, intron 2 of 2) intron (NR_147170, intron 2 of 2) -27953 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 272.75-10 chr2 136882876 136883291 + 1.5 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 117538 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 348.75-2 chr6 63945865 63946292 + 1.5 NA intron (NM_001292009, intron 35 of 43) MIR3|SINE|MIR 139242 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 222-9 chr13 33862736 33862896 + 1.5 NA intron (NM_181558, intron 8 of 8) intron (NM_181558, intron 8 of 8) 44667 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 160-10 chr13 32879671 32879814 + 1.5 NA intron (NR_047020, intron 3 of 4) intron (NR_047020, intron 3 of 4) 31910 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 113-12 chr10 63662325 63662447 + 1.5 NA Intergenic L1MC5|LINE|L1 -140496 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 264-21 chr3 128535380 128535610 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 27660 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 253.5-38 chr6 36695985 36696211 + 1.5 NA Intergenic L1ME4b|LINE|L1 -1728 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 114-50 chr2 190228988 190229095 + 1.5 NA intron (NM_198047, intron 11 of 12) intron (NM_198047, intron 11 of 12) 48178 NM_001042519 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 159.5 chr1 61392534 61392779 + 1.5 NA intron (NM_001134673, intron 7 of 10) intron (NM_001134673, intron 7 of 10) -139138 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 147-9 chr10 57282544 57282706 + 1.5 NA Intergenic Intergenic 21934 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 232.75-3 chr1 192975666 192975966 + 1.5 NA Intergenic MIRb|SINE|MIR -27559 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 147-2 chr1 40935369 40935566 + 1.5 NA Intergenic AluJr4|SINE|Alu -44229 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 349.5-5 chr2 147552509 147552788 + 1.5 NA Intergenic Intergenic -291869 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 141-52 chr3 3284410 3284578 + 1.5 NA Intergenic L1MCa|LINE|L1 -104777 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 297-10 chr14 83636875 83637181 + 1.5 NA Intergenic L1MEg|LINE|L1 994396 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 210.75 chr1 45969052 45969344 + 1.5 NA intron (NM_001324320, intron 5 of 29) L1MCa|LINE|L1 104850 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 185-4 chr10 106698364 106698515 + 1.5 NA intron (NM_001206569, intron 9 of 25) intron (NM_001206569, intron 9 of 25) 466267 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 158-52 chr5 114229259 114229428 + 1.5 NA Intergenic L4_C_Mam|LINE|RTE-X -132727 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 207.5-61 chr8 102298229 102298489 + 1.5 NA intron (NM_001282873, intron 26 of 58) intron (NM_001282873, intron 26 of 58) 58908 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 241-22 chr21 18540026 18540323 + 1.5 NA Intergenic Intergenic -136389 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 325.5-5 chr12 69831166 69831445 + 1.5 NA intron (NM_182530, intron 1 of 24) MER58A|DNA|hAT-Charlie 6078 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 239.5-24 chr5 86053333 86053586 + 1.5 NA Intergenic Intergenic -228985 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 239-15 chr14 84310437 84310667 + 1.5 NA Intergenic Intergenic -961380 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 257.5-28 chr8 70057512 70057758 + 1.5 NA intron (NM_024504, intron 6 of 7) intron (NM_024504, intron 6 of 7) 13617 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 177.75-14 chr14 30137503 30137684 + 1.5 NA Intergenic Intergenic -209746 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 223.25-16 chr21 18967503 18967990 + 1.5 NA Intergenic Intergenic -207934 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 144-48 chr4 29718111 29718222 + 1.5 NA Intergenic Intergenic 503874 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 178.75-39 chr3 99158298 99158495 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR -256701 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 124-35 chr20 33017662 33017761 + 1.5 NA intron (NM_025227, intron 7 of 15) MIRb|SINE|MIR 10007 NM_025227 80341 Hs.257045 NM_025227 ENSG00000078898 BPIFB2 BPIL1|C20orf184|LPLUNC2|RYSR|dJ726C3.2 BPI fold containing family B member 2 protein-coding 188.5-51 chr7 366943 367081 + 1.5 NA Intergenic L1MA5|LINE|L1 -12413 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 268-26 chr7 51699814 51700151 + 1.5 NA Intergenic L1MCb|LINE|L1 -306726 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 220.5-21 chr18 11220982 11221154 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -72306 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 120.5-71 chr3 190787788 190787885 + 1.5 NA Intergenic L1MC4|LINE|L1 74858 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 203-20 chr2 128004048 128004275 + 1.5 NA intron (NM_001330303, intron 7 of 19) intron (NM_001330303, intron 7 of 19) 23134 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 190.5-54 chr4 62860413 62860581 + 1.5 NA Intergenic Intergenic -698732 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 318.5-8 chr18 2547704 2548091 + 1.5 NA intron (NM_022840, intron 5 of 8) intron (NM_022840, intron 5 of 8) 23608 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 192-18 chr15 62033127 62033329 + 1.5 NA intron (NM_001018088, intron 5 of 81) intron (NM_001018088, intron 5 of 81) 27219 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 228.5-14 chr2 10067941 10068108 + 1.5 NA intron (NM_001037160, intron 1 of 2) L1MEd|LINE|L1 12387 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 156.75-31 chr14 64376452 64376563 + 1.5 NA Intergenic Intergenic -11846 NM_001364837 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 172.5-2 chr1 79035057 79035258 + 1.5 NA Intergenic Intergenic -28427 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 176.25-3 chr1 45054651 45054834 + 1.5 NA intron (NM_020883, intron 4 of 13) intron (NM_020883, intron 4 of 13) 42488 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 171.5-13 chr11 60910998 60911249 + 1.5 NA Intergenic L2a|LINE|L2 -3035 NM_024092 79073 Hs.13662 NM_024092 ENSG00000110108 TMEM109 - transmembrane protein 109 protein-coding 226.5-50 chr8 90515553 90515728 + 1.5 NA Intergenic Intergenic 90423 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 223.5-28 chr14 80319531 80319707 + 1.5 NA intron (NR_038355, intron 2 of 8) THE1B|LTR|ERVL-MaLR -88562 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 235-23 chr2 56597050 56597327 + 1.5 NA Intergenic L1M4|LINE|L1 -411418 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 147.5-49 chr2 126436208 126436362 + 1.5 NA Intergenic Intergenic -219650 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 151.5-76 chr6 144847150 144847278 + 1.5 NA intron (NM_007124, intron 73 of 73) intron (NM_007124, intron 73 of 73) 441559 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 185.25-35 chr3 47054696 47054892 + 1.5 NA intron (NR_146158, intron 16 of 21) intron (NR_146158, intron 16 of 21) 43252 NR_024046 100129354 Hs.201522 NR_024046 NRADDP - neurotrophin receptor associated death domain, pseudogene pseudo 199.5-16 chr14 63904191 63904358 + 1.5 NA intron (NM_015180, intron 1 of 114) L1PA16|LINE|L1 51270 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 142.5-26 chr14 68885772 68885895 + 1.5 NA intron (NM_001102, intron 11 of 20) intron (NM_001102, intron 11 of 20) -89590 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 160.5-29 chr17 79051025 79051239 + 1.5 NA Intergenic Intergenic 16833 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 117-66 chr4 187803407 187803492 + 1.5 NA Intergenic L1MA3|LINE|L1 -130808 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 119.5-6 chr1 206108311 206108414 + 1.5 NA 3' UTR (NM_000707, exon 2 of 2) 3' UTR (NM_000707, exon 2 of 2) 9026 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 346.5-5 chr2 127760062 127760494 + 1.5 NA intron (NM_001006623, intron 7 of 7) intron (NM_001006623, intron 7 of 7) 50893 NM_018383 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 282.75-13 chr5 160392901 160393182 + 1.5 NA TTS (NM_022090) TTS (NM_022090) 7013 NM_022090 63920 Hs.529464 NM_022090 ENSG00000221886 ZBED8 Buster3|C5orf54 zinc finger BED-type containing 8 protein-coding 166-62 chr9 70935504 70935653 + 1.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -66526 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 341.25-8 chr5 52206540 52206988 + 1.5 NA Intergenic Intergenic 198733 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 231-4 chr1 174706585 174706797 + 1.5 NA intron (NM_001366451, intron 2 of 12) L1ME3A|LINE|L1 5696 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 270.5-14 chr19 16256784 16257060 + 1.5 NA Intergenic Intergenic 59011 NM_032493 8907 Hs.71040 NM_032493 ENSG00000072958 AP1M1 AP47|CLAPM2|CLTNM|MU-1A adaptor related protein complex 1 subunit mu 1 protein-coding 267.5-15 chr2 130754521 130754804 + 1.5 NA promoter-TSS (NM_001105193) promoter-TSS (NM_001105193) -878 NM_152698 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 195-16 chr14 31478995 31479147 + 1.5 NA Intergenic Intergenic 8874 NR_036675 2856 Hs.727479 NM_001197184 ENSG00000214943 GPR33 - G protein-coupled receptor 33 (gene/pseudogene) protein-coding 214.25-20 chr2 189135499 189135700 + 1.5 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) -2488 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 225.75-30 chr8 129586554 129586886 + 1.5 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -11702 NR_130918 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 215.5-45 chr6 123089243 123089598 + 1.5 NA Intergenic Intergenic 93185 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 207.75-12 chr14 53345370 53345600 + 1.5 NA Intergenic Intergenic 192131 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 181.5-47 chr3 193827560 193827718 + 1.5 NA Intergenic Intergenic 16370 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 193.5-54 chr4 63791817 63792070 + 1.5 NA Intergenic Intergenic 617507 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 151.25-41 chr4 97109492 97109603 + 1.5 NA Intergenic Intergenic -257379 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 205-13 chr13 94792773 94793014 + 1.5 NA intron (NR_110754, intron 2 of 4) L1MB7|LINE|L1 31952 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 145-63 chr7 133049074 133049205 + 1.5 NA intron (NR_133671, intron 2 of 10) L1MC4|LINE|L1 -14224 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 316-9 chr16 80042028 80042553 + 1.5 NA Intergenic Intergenic 247041 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 189-39 chr5 8068349 8068693 + 1.5 NA Intergenic L2a|LINE|L2 199373 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 329-3 chr14 35917271 35917530 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 91062 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 116.5-106 chr7 18242366 18242554 + 1.5 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -47632 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 193.75-25 chr2 150104034 150104220 + 1.5 NA Intergenic Intergenic 152880 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 180.25-47 chr4 80636112 80636316 + 1.5 NA intron (NM_001206997, intron 4 of 6) 7SK|RNA|RNA 300494 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 277.25-7 chr11 82578761 82579073 + 1.5 NA Intergenic L1PA8A|LINE|L1 154947 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 242.25-15 chr2 84252931 84253352 + 1.5 NA Intergenic L1ME4a|LINE|L1 -37541 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 283.5-27 chr8 68086250 68086622 + 1.5 NA intron (NM_024870, intron 18 of 39) intron (NM_024870, intron 18 of 39) 134390 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 231-31 chr5 110417992 110418264 + 1.5 NA Intergenic LTR50|LTR|ERVL 95787 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 245.25-29 chr8 103683556 103683837 + 1.5 NA intron (NM_001348488, intron 3 of 25) intron (NM_001348488, intron 3 of 25) -135524 NM_001348503 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 221.75-7 chr14 42818244 42818505 + 1.5 NA Intergenic Intergenic 1211518 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 277.25-30 chr8 138683670 138683969 + 1.5 NA intron (NM_152888, intron 39 of 64) MLT1J2|LTR|ERVL-MaLR -186089 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 258.5-2 chr10 24013511 24013725 + 1.5 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -195173 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 388 chr10 56200043 56200321 + 1.5 NA Intergenic Intergenic 161077 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 325.75-10 chr7 53974229 53974628 + 1.5 NA Intergenic Intergenic -162497 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 177-11 chr13 37575256 37575413 + 1.5 NA intron (NM_001330517, intron 16 of 21) intron (NM_001330517, intron 16 of 21) 23434 NM_001330517 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 153.75-16 chr12 3926308 3926435 + 1.5 NA Intergenic L1PA16|LINE|L1 -52923 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 127-23 chr12 29798873 29799020 + 1.5 NA Intergenic Intergenic -14187 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 178.75-37 chr3 85075494 85075783 + 1.5 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -13374 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 216-3 chr1 241233064 241233307 + 1.5 NA intron (NM_001282778, intron 2 of 16) L1MA4|LINE|L1 100913 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 330.5 chr11 57390951 57391307 + 1.5 NA promoter-TSS (NM_002728) promoter-TSS (NM_002728) -479 NM_002728 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 160.5-63 chr6 47280356 47280479 + 1.5 NA intron (NM_014452, intron 3 of 5) intron (NM_014452, intron 3 of 5) 29488 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 227-33 chr8 75247922 75248073 + 1.5 NA intron (NR_103849, intron 1 of 1) LTR80A|LTR|ERVL 30484 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 409.75 chr13 86970137 86970635 + 1.5 NA Intergenic Intergenic 58466 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 264.5-4 chr10 106057210 106057551 + 1.5 NA Intergenic Intergenic -82785 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 166-23 chr14 73102319 73102551 + 1.5 NA intron (NM_021239, intron 9 of 18) intron (NM_021239, intron 9 of 18) -34072 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 336-15 chr9 3674993 3675303 + 1.5 NA intron (NR_121586, intron 3 of 4) intron (NR_121586, intron 3 of 4) 7062 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 294.75-9 chr2 44065047 44065356 + 1.5 NA Intergenic AluSx|SINE|Alu -69212 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 343.75-5 chr2 21130634 21131043 + 1.5 NA intron (NM_001306137, intron 2 of 3) Charlie1|DNA|hAT-Charlie 6852 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 315.25-3 chr12 2559798 2560233 + 1.5 NA intron (NM_199460, intron 11 of 49).2 MER33|DNA|hAT-Charlie 112205 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 303.25-9 chr2 199413635 199413857 + 1.5 NA intron (NR_134967, intron 3 of 4) MLT1J|LTR|ERVL-MaLR 44193 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 166-32 chr2 8843742 8843899 + 1.5 NA Intergenic Intergenic -6207 NM_001348742 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 208-39 chr6 6073801 6074115 + 1.5 NA Intergenic Intergenic -66353 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 278.25-21 chr6 52026971 52027303 + 1.5 NA intron (NM_138694, intron 31 of 66) intron (NM_138694, intron 31 of 66) 60476 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 221.25-39 chr8 125020384 125020550 + 1.5 NA intron (NM_003129, intron 9 of 10) intron (NM_003129, intron 9 of 10) 21962 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 212-30 chr22 30120103 30120313 + 1.5 NA intron (NM_001329457, intron 9 of 11) intron (NM_001329457, intron 9 of 11) 39744 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 157.5-50 chr2 101547260 101547426 + 1.5 NA Intergenic Intergenic -72231 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 151.5-83 chr8 71260521 71260668 + 1.5 NA intron (NM_001370335, intron 14 of 20) intron (NM_001370335, intron 14 of 20) 96112 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 162-36 chr4 14765718 14765921 + 1.5 NA intron (NR_126435, intron 2 of 6) MLT1J-int|LTR|ERVL-MaLR 122350 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 246-12 chr2 73575769 73575990 + 1.5 NA intron (NM_015120, intron 16 of 22) L1MB8|LINE|L1 66543 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 335.25-12 chr6 56514936 56515280 + 1.5 NA intron (NM_001144770, intron 64 of 94) intron (NM_001144770, intron 64 of 94) -120980 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 142.5-52 chr3 62190884 62191036 + 1.5 NA intron (NM_002841, intron 8 of 29) L1MC4|LINE|L1 127987 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 282-24 chr8 135831100 135831459 + 1.5 NA Intergenic Intergenic 373823 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 215.5-13 chr12 81741873 81742122 + 1.5 NA intron (NM_003625, intron 3 of 32) L2a|LINE|L2 16510 NM_001220476 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 166-41 chr3 100900902 100901135 + 1.5 NA intron (NM_001349332, intron 3 of 35) intron (NM_001349332, intron 3 of 35) 92472 NM_001365642 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 164.75-37 chr2 177523118 177523232 + 1.5 NA intron (NM_003659, intron 18 of 19) intron (NM_003659, intron 18 of 19) 29621 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 161-16 chr11 32047169 32047348 + 1.5 NA Intergenic Intergenic -5940 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 462.75 chr11 98592228 98592692 + 1.5 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat -428489 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 240-16 chr2 165503698 165503968 + 1.5 NA intron (NM_001172173, intron 2 of 6) intron (NM_001172173, intron 2 of 6) 34135 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 230-22 chr5 96493456 96493750 + 1.5 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -60355 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 138-71 chr6 158520746 158520856 + 1.5 NA Intergenic L1M5|LINE|L1 -15635 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 279-25 chr8 122847507 122847819 + 1.5 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 66008 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 147-41 chr2 127689189 127689341 + 1.5 NA Intergenic L1M4b|LINE|L1 -7479 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 230.25-33 chr8 130169155 130169378 + 1.5 NA intron (NM_001362925, intron 9 of 29) intron (NM_001362925, intron 9 of 29) -84498 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 143.5-79 chr5 16375865 16376021 + 1.5 NA intron (NR_104625, intron 8 of 8) intron (NR_104625, intron 8 of 8) 65159 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 243-6 chr13 76510667 76510938 + 1.5 NA Intergenic L1PA16|LINE|L1 375603 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 334-8 chr4 94235703 94236140 + 1.5 NA intron (NM_001128429, intron 4 of 23) intron (NM_001128429, intron 4 of 23) -17388 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 274.75-4 chr14 84722146 84722508 + 1.5 NA Intergenic L1PA16|LINE|L1 -549605 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 123.5-54 chr2 152791708 152791813 + 1.5 NA Intergenic Intergenic 73123 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 199-46 chr7 141113937 141114108 + 1.5 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 39958 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 240.75-29 chr4 52849057 52849236 + 1.5 NA Intergenic Intergenic -13171 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 244.5-21 chr22 40735422 40735718 + 1.5 NA Intergenic AluJo|SINE|Alu 56392 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 269-14 chr4 97028998 97029223 + 1.5 NA Intergenic Intergenic -337816 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 181.5-6 chr10 57843749 57843933 + 1.5 NA Intergenic Intergenic 424053 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 231.5-54 chrX 85165819 85166041 + 1.5 NA intron (NM_001367858, intron 2 of 11) L1MA1|LINE|L1 -44776 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 227.5-42 chr4 146873754 146873923 + 1.5 NA intron (NR_133922, intron 7 of 13) intron (NR_133922, intron 7 of 13) 72026 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 250-35 chrX 74057609 74057947 + 1.5 NA intron (NR_028379, intron 5 of 6) HERVL74-int|LTR|ERVL 113454 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 221.5-51 chr8 126941324 126941533 + 1.5 NA Intergenic Intergenic -71726 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 251-4 chr1 238021887 238022116 + 1.5 NA Intergenic Intergenic -131079 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 204.75-41 chr6 65687350 65687552 + 1.5 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 19774 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 139.25-15 chr10 125951570 125951767 + 1.5 NA intron (NM_001363549, intron 1 of 10) Arthur1|DNA|hAT-Tip100 21605 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 214-34 chr4 74313142 74313337 + 1.5 NA intron (NM_001270989, intron 4 of 4) L2a|LINE|L2 4769 NR_073114 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 175.5-9 chr10 42562266 42562477 + 1.5 NA Intergenic AluSq2|SINE|Alu -9501 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 290.5-19 chr3 65366603 65367051 + 1.5 NA intron (NM_001365904, intron 19 of 24) intron (NM_001365904, intron 19 of 24) -526989 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 303-13 chrX 52303208 52303475 + 1.5 NA Intergenic L1ME1|LINE|L1 33301 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 174-42 chr5 23850500 23850709 + 1.5 NA Intergenic Intergenic -100744 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 210-26 chr4 165433623 165433817 + 1.5 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) 47478 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 196-21 chr2 18032991 18033231 + 1.5 NA Intergenic Intergenic 154444 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 314-15 chr6 46939908 46940375 + 1.5 NA intron (NM_015234, intron 1 of 20) MER8|DNA|TcMar-Tigger 14798 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 207.75-21 chr2 142370751 142371027 + 1.5 NA Intergenic Intergenic -239188 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 243-12 chr2 100387168 100387449 + 1.5 NA Intergenic L2c|LINE|L2 30360 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 289.75-18 chr4 63816101 63816315 + 1.5 NA Intergenic L1PA13|LINE|L1 593242 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 154-49 chr4 66161210 66161395 + 1.5 NA Intergenic Intergenic -115522 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 264-16 chr2 129388704 129389000 + 1.5 NA Intergenic L1MC3|LINE|L1 -114961 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 268.5-18 chr20 44873712 44873951 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -11874 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 168-24 chr13 49059267 49059439 + 1.5 NA intron (NM_001079673, intron 2 of 25) L1MB5|LINE|L1 -50964 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 237-7 chr12 5984221 5984430 + 1.5 NA intron (NM_000552, intron 40 of 51) intron (NM_000552, intron 40 of 51) -38093 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 347-11 chrX 81785686 81785987 + 1.5 NA Intergenic L1PB3|LINE|L1 583734 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 215-10 chr12 6253576 6253836 + 1.5 NA Intergenic AluSg|SINE|Alu 53306 NM_001769 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 190.25-50 chr7 46408779 46409014 + 1.5 NA Intergenic Intergenic 288226 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 134.75-52 chr3 124399633 124399806 + 1.5 NA intron (NM_001024660, intron 13 of 59) intron (NM_001024660, intron 13 of 59) 25387 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 186.25-21 chr17 41185365 41185489 + 1.5 NA promoter-TSS (NM_033060) promoter-TSS (NM_033060) -516 NM_033060 85285 Hs.437079 NM_033060 KRTAP4-1 KAP4.1|KAP4.10|KRTAP4-10|KRTAP4.10 keratin associated protein 4-1 protein-coding 260.25-9 chr2 84451122 84451358 + 1.5 NA intron (NM_003849, intron 1 of 8) intron (NM_003849, intron 1 of 8) 8040 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 274-25 chr7 43504915 43505115 + 1.5 NA intron (NM_001287059, intron 19 of 27) intron (NM_001287059, intron 19 of 27) 17527 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 137.5-127 chrX 86471930 86472039 + 1.5 NA intron (NM_001139515, intron 2 of 11) L1MA8|LINE|L1 209016 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 237.75-36 chr4 60781009 60781247 + 1.5 NA Intergenic Intergenic -141491 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 213.75-15 chr11 111873733 111874003 + 1.5 NA TTS (NM_138378) TTS (NM_138378) -2287 NM_001352413 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 264.5-9 chr14 56287919 56288190 + 1.5 NA intron (NM_021255, intron 3 of 5) L1MB1|LINE|L1 169643 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 355.5-4 chr11 95342039 95342567 + 1.5 NA Intergenic Intergenic -109828 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 210.5-16 chr14 36192284 36192459 + 1.5 NA Intergenic Intergenic -15720 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 362.25-2 chr1 184347514 184347846 + 1.5 NA Intergenic Intergenic -39349 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 115.25-46 chr2 68739458 68739554 + 1.5 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) 4129 NM_001364821 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 164.25-55 chr8 33585171 33585331 + 1.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 12546 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 221.5-24 chr20 48660155 48660455 + 1.5 NA intron (NM_020820, intron 15 of 39) L1M5|LINE|L1 167694 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 191.5-40 chr3 105362399 105362729 + 1.5 NA Intergenic Intergenic -4149 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 166-29 chr18 9207507 9207692 + 1.5 NA intron (NM_015208, intron 4 of 12) intron (NM_015208, intron 4 of 12) 70036 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 137.5-15 chr10 115634243 115634358 + 1.5 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 540935 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 126-6 chr10 44727303 44727452 + 1.5 NA Intergenic L1MB8|LINE|L1 -183939 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 194-2 chr1 45017562 45017742 + 1.5 NA 3' UTR (NM_020883, exon 14 of 14) 3' UTR (NM_020883, exon 14 of 14) 5398 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 195-37 chr3 154606127 154606296 + 1.5 NA Intergenic MIRc|SINE|MIR -176021 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 238.5-27 chr4 102477907 102478131 + 1.5 NA intron (NR_136202, intron 1 of 4) L1PA6|LINE|L1 -23340 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 249-12 chr17 27650333 27650573 + 1.5 NA TTS (NM_009587) TTS (NM_009587) 19265 NM_001330163 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 239.25-23 chr5 43899364 43899661 + 1.5 NA Intergenic LTR33|LTR|ERVL -296282 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 209.5-9 chr15 85149283 85149549 + 1.5 NA Intergenic L1MC1|LINE|L1 85365 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 215.5-40 chr5 78513830 78514096 + 1.5 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 134809 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 246-21 chr5 39671866 39672148 + 1.5 NA Intergenic Intergenic 151576 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 232.5-13 chr13 58839710 58839957 + 1.5 NA Intergenic Intergenic -606716 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 227.25-39 chr8 106498195 106498653 + 1.5 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 50500 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 272.25-15 chr4 179896792 179897040 + 1.5 NA Intergenic MER34A|LTR|ERV1 1262233 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 325.5-3 chr10 88733138 88733441 + 1.5 NA intron (NM_001080518, intron 5 of 8) intron (NM_001080518, intron 5 of 8) 8745 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 211.5-24 chr2 55645424 55645699 + 1.5 NA intron (NM_033109, intron 21 of 27) intron (NM_033109, intron 21 of 27) -27939 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 244.75-17 chr5 84252508 84252671 + 1.5 NA intron (NM_005711, intron 2 of 10) intron (NM_005711, intron 2 of 10) 132278 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 168-13 chr10 55864115 55864305 + 1.5 NA Intergenic Intergenic -236268 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 253.5-35 chr5 54261418 54261685 + 1.5 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 49022 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 423-3 chr7 28085800 28086109 + 1.5 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -94503 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 211-27 chr5 97574875 97575066 + 1.5 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 70274 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 198-4 chr1 119074909 119075134 + 1.5 NA intron (NM_015836, intron 2 of 5) L1PB4|LINE|L1 27616 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 186.75-56 chr6 125431848 125432057 + 1.5 NA Intergenic MER2|DNA|TcMar-Tigger -129985 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 264-15 chr2 123602335 123602592 + 1.5 NA Intergenic Intergenic 422711 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 277-22 chr5 130731869 130732118 + 1.5 NA Intergenic L1M4b|LINE|L1 433263 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 479.25 chr12 41191096 41191911 + 1.5 NA exon (NM_001164595, exon 2 of 10) exon (NM_001164595, exon 2 of 10) 3183 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 202.5-58 chr8 136985002 136985163 + 1.5 NA Intergenic Intergenic 428506 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 265.25-9 chr12 27917270 27917751 + 1.5 NA Intergenic L1MA5A|LINE|L1 52466 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 174-23 chr18 8667496 8667715 + 1.5 NA Intergenic MER65-int|LTR|ERV1 40016 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 178-6 chr10 47355488 47355687 + 1.5 NA intron (NM_002900, intron 3 of 3) intron (NM_002900, intron 3 of 3) 7224 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 177.75-51 chr6 92939384 92939602 + 1.5 NA Intergenic Intergenic 480066 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 349.25 chr10 93054726 93055007 + 1.5 NA intron (NM_001319195, intron 20 of 21) intron (NM_001319195, intron 20 of 21) -5932 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 218-10 chr12 15110895 15111054 + 1.5 NA intron (NM_032918, intron 4 of 4) MER103C|DNA|hAT-Charlie -40949 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 321.75-19 chr6 50716443 50716822 + 1.5 NA intron (NM_172238, intron 2 of 7) intron (NM_172238, intron 2 of 7) 3088 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 170-43 chr4 121064334 121064470 + 1.5 NA intron (NM_024574, intron 1 of 3) intron (NM_024574, intron 1 of 3) 8133 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 204.5-67 chr8 136722483 136722740 + 1.5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 191813 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 198-24 chr2 30136491 30136891 + 1.5 NA Intergenic Intergenic -10316 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 184.75-52 chr6 47582208 47582442 + 1.5 NA intron (NM_012120, intron 11 of 17) intron (NM_012120, intron 11 of 17) -74147 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 223.5-13 chr10 98026431 98026706 + 1.5 NA intron (NM_001206528, intron 1 of 14) intron (NM_001206528, intron 1 of 14) 4053 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 132.5-11 chr10 112283938 112284046 + 1.5 NA intron (NM_058222, intron 2 of 10) intron (NM_058222, intron 2 of 10) 592 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 241.75-29 chr8 118365095 118365386 + 1.5 NA intron (NM_001363274, intron 4 of 4) L2b|LINE|L2 -253421 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 132.75-107 chr9 104749810 104749946 + 1.5 NA intron (NM_015469, intron 1 of 5) intron (NM_015469, intron 1 of 5) 2195 NM_015469 25934 Hs.530275 NM_015469 ENSG00000136783 NIPSNAP3A HSPC299|NIPSNAP4|TASSC nipsnap homolog 3A protein-coding 184-30 chr3 46549438 46549625 + 1.5 NA intron (NM_024512, intron 2 of 8) intron (NM_024512, intron 2 of 8) -7867 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 347 chr1 80357282 80357689 + 1.5 NA Intergenic Intergenic -178270 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 192.5-46 chr5 31971675 31971845 + 1.5 NA intron (NM_178140, intron 2 of 24) L2a|LINE|L2 -35601 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 154-57 chr6 44531573 44531764 + 1.5 NA Intergenic Intergenic 20213 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 424.5-3 chr5 87685706 87686019 + 1.5 NA Intergenic AluSz|SINE|Alu 23820 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 200.25-48 chr7 120255260 120255503 + 1.5 NA Intergenic Intergenic -17794 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 359.25-8 chr4 49709410 49710162 + 1.5 NA Intergenic SAR|Satellite|Satellite 723144 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 368.75-3 chr20 63044344 63044768 + 1.5 NA intron (NR_033369, intron 1 of 5) intron (NR_033369, intron 1 of 5) 6545 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 128.25-69 chr6 64439801 64439901 + 1.5 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 633015 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 216.75-5 chr1 96532540 96532751 + 1.5 NA Intergenic Intergenic -158520 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 130-65 chr5 107579743 107579873 + 1.5 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 91129 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 190.25-37 chr4 31379447 31379632 + 1.5 NA Intergenic L2|LINE|L2 -127005 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 189 chr1 33983215 33983438 + 1.5 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 114370 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 178.5-68 chr6 68811088 68811300 + 1.5 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 175912 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 244-3 chr10 49319948 49320252 + 1.5 NA intron (NM_001135196, intron 2 of 2) L1MB2|LINE|L1 20930 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 210.5-3 chr1 236234471 236234644 + 1.5 NA intron (NM_019891, intron 8 of 15) intron (NM_019891, intron 8 of 15) 47401 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 392-2 chr14 26195530 26196005 + 1.5 NA Intergenic Intergenic 357663 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 164.5-68 chr4 109231861 109232085 + 1.5 NA intron (NM_198721, intron 3 of 36) MIRb|SINE|MIR 70685 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 177.5-16 chr13 89189508 89189742 + 1.5 NA Intergenic L1M2|LINE|L1 -45666 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 159-48 chr4 60839815 60840035 + 1.5 NA Intergenic Intergenic -82694 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 287.5-19 chr3 57870673 57870994 + 1.5 NA intron (NM_001304420, intron 11 of 21) intron (NM_001304420, intron 11 of 21) -19081 NM_001311178 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 193-12 chr11 18224135 18224287 + 1.5 NA Intergenic Intergenic 12591 NM_006512 6291 Hs.1955 NM_006512 ENSG00000148965 SAA4 C-SAA|CSAA serum amyloid A4, constitutive protein-coding 181-25 chr17 34067025 34067217 + 1.5 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 89685 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 151-27 chr18 7532611 7532752 + 1.5 NA Intergenic L1M5|LINE|L1 -34635 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 407.5-4 chr5 154000569 154001035 + 1.5 NA intron (NM_001317993, intron 12 of 14) intron (NM_001317993, intron 12 of 14) 38108 NM_001317993 10827 Hs.166551 NM_018691 ENSG00000055147 FAM114A2 133K02|C5orf3 family with sequence similarity 114 member A2 protein-coding 268-12 chr18 6687223 6687466 + 1.5 NA Intergenic L2a|LINE|L2 -42372 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 197.75-29 chr3 132943314 132943784 + 1.5 NA Intergenic MER117|DNA|hAT-Charlie -94739 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 321-11 chr5 7166746 7167083 + 1.5 NA Intergenic Intergenic 102440 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 137.75-19 chr11 128472324 128472444 + 1.5 NA intron (NM_001330451, intron 5 of 6) intron (NM_001330451, intron 5 of 6) 49926 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 164.5-18 chr13 32808021 32808243 + 1.5 NA Intergenic LTR37-int|LTR|ERV1 103520 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 340.5-7 chr3 156841706 156841984 + 1.5 NA intron (NM_001004316, intron 2 of 12) intron (NM_001004316, intron 2 of 12) 15492 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 144.75-3 chr1 87884832 87885140 + 1.5 NA Intergenic Intergenic -513331 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 195-56 chr7 40866356 40866533 + 1.5 NA Intergenic Intergenic 113495 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 252.25-21 chr6 123430876 123431134 + 1.5 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -8599 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 116.25-71 chr5 33281429 33281533 + 1.5 NA Intergenic Intergenic 51746 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 154-15 chr12 110509782 110509909 + 1.5 NA intron (NM_001286536, intron 4 of 8) L1ME4b|LINE|L1 7514 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 141.75-77 chr6 112742301 112742434 + 1.5 NA Intergenic Intergenic 395037 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 205.25-7 chr11 17091623 17091943 + 1.5 NA intron (NM_001321380, intron 29 of 31) intron (NM_001321380, intron 29 of 31) -14116 NM_001017 6207 Hs.446588 NM_001017 ENSG00000110700 RPS13 S13 ribosomal protein S13 protein-coding 193-29 chr19 44133568 44133819 + 1.5 NA 3' UTR (NM_001321685, exon 6 of 6) 3' UTR (NM_001321685, exon 6 of 6) -7861 NM_006630 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 133.75-76 chr8 110433792 110434032 + 1.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -458141 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 264.5-18 chr20 60031136 60031477 + 1.5 NA Intergenic Intergenic -24619 NR_126504 284756 Hs.335319 NR_126504 ENSG00000176659 C20orf197 - chromosome 20 open reading frame 197 ncRNA 175-11 chr12 38003593 38003755 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr -313100 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 166-48 chr5 67712987 67713106 + 1.5 NA Intergenic L1MC3|LINE|L1 -66257 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 233.5-20 chr16 12790099 12790327 + 1.5 NA intron (NM_018340, intron 1 of 3) intron (NM_018340, intron 1 of 3) 13674 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 209-31 chr7 33237377 33237621 + 1.5 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 107935 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 265.5-11 chr14 50615498 50615759 + 1.5 NA intron (NM_015915, intron 8 of 13) intron (NM_015915, intron 8 of 13) 52678 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 177 chr1 49207149 49207334 + 1.5 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -50170 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 307-9 chr3 108560914 108561283 + 1.5 NA intron (NM_020890, intron 13 of 20) intron (NM_020890, intron 13 of 20) 28340 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 429-2 chr10 76095837 76096286 + 1.5 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 313300 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 278-23 chr6 129795779 129796193 + 1.5 NA Intergenic L1MC4|LINE|L1 65329 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 275.5-22 chr3 97867380 97867692 + 1.5 NA intron (NM_153605, intron 3 of 21) intron (NM_153605, intron 3 of 21) 45525 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 280.5-26 chr7 82047477 82047841 + 1.5 NA intron (NM_000722, intron 10 of 38) MamRTE1|LINE|RTE-BovB 38482 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 341.25 chr1 23533151 23533572 + 1.5 NA Intergenic MIRc|SINE|MIR -2128 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 250-17 chr20 59172855 59173291 + 1.5 NA Intergenic ERVL-E-int|LTR|ERVL -17947 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 188-25 chr20 37272571 37272884 + 1.5 NA Intergenic L2c|LINE|L2 -15819 NM_021081 2691 Hs.37023 NM_021081 ENSG00000118702 GHRH GHRF|GRF|INN growth hormone releasing hormone protein-coding 395.75-3 chr5 89308212 89308678 + 1.5 NA intron (NR_136219, intron 7 of 9) L1MA8|LINE|L1 -404340 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 181-28 chr2 25111137 25111374 + 1.5 NA intron (NM_014971, intron 4 of 22) L1MC5a|LINE|L1 57325 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 218.75-29 chr5 5094578 5094763 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -16359 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 174.75-22 chr14 76044993 76045168 + 1.5 NA intron (NR_045664, intron 3 of 7) Tigger2|DNA|TcMar-Tigger 59317 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 279.75-10 chr2 104741238 104741515 + 1.5 NA Intergenic Intergenic 16343 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 177-14 chr14 45443607 45443757 + 1.5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -190480 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 269-8 chr2 48322448 48322723 + 1.5 NA intron (NM_002158, intron 1 of 6) HAL1M8|LINE|L1 7903 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 167-33 chr2 134892186 134892320 + 1.5 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 26353 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 268-9 chr16 11059326 11059611 + 1.5 NA intron (NM_015226, intron 17 of 22) intron (NM_015226, intron 17 of 22) 114904 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 217-27 chr7 46050538 46050863 + 1.5 NA Intergenic Intergenic -129428 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 216.5-19 chr20 33380378 33380660 + 1.5 NA intron (NM_016082, intron 7 of 13) L1MC4|LINE|L1 21000 NM_016408 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 186-57 chr9 87887049 87887263 + 1.5 NA exon (NM_178828, exon 4 of 4) exon (NM_178828, exon 4 of 4) 4279 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 183.5-17 chr11 108095676 108095798 + 1.5 NA intron (NM_003478, intron 16 of 18) intron (NM_003478, intron 16 of 18) -25830 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 191.25-54 chr6 67570393 67570631 + 1.5 NA Intergenic L1ME2|LINE|L1 -484839 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 166.25-16 chr14 44600054 44600291 + 1.5 NA Intergenic Intergenic 92763 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 132-29 chr17 70852404 70852567 + 1.5 NA Intergenic Intergenic 349694 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 270.5-17 chr20 53295453 53295762 + 1.5 NA intron (NM_173485, intron 2 of 2) MER113|DNA|hAT-Charlie 110324 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 131-12 chr10 50982652 50982841 + 1.5 NA Intergenic Intergenic -8142 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 230.5-59 chr8 144570546 144570724 + 1.5 NA intron (NM_025251, intron 2 of 10) L1PA6|LINE|L1 35060 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 138-55 chr5 24912837 24912956 + 1.5 NA Intergenic Intergenic -72313 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 148.5-11 chr10 110804434 110804580 + 1.5 NA intron (NM_001134363, intron 7 of 13) intron (NM_001134363, intron 7 of 13) 66397 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 322-6 chr22 40970493 40970790 + 1.5 NA intron (NM_014248, intron 4 of 4) L1ME4b|LINE|L1 19263 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 200.5-57 chr7 15492874 15493101 + 1.5 NA intron (NM_001004320, intron 3 of 12) L1ME4c|LINE|L1 69028 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 155.5-5 chr1 64082826 64082967 + 1.5 NA intron (NM_005012, intron 4 of 8) LTR16B1|LTR|ERVL 29309 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 157.25-60 chr7 108846480 108846623 + 1.5 NA Intergenic Intergenic 38036 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 263.25-7 chr21 44738275 44738551 + 1.5 NA Intergenic L1ME4b|LINE|L1 -26841 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 253-13 chr2 126286749 126287059 + 1.5 NA Intergenic MER21C|LTR|ERVL -168919 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 163-17 chr16 84817080 84817279 + 1.5 NA Intergenic MIR|SINE|MIR -2806 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 197.25-38 chr2 157593632 157594089 + 1.5 NA intron (NM_145259, intron 1 of 8) intron (NM_145259, intron 1 of 8) 3700 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 157.75-30 chr16 74168690 74168865 + 1.5 NA Intergenic Intergenic 46744 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 179-26 chr17 50367222 50367374 + 1.5 NA TTS (NM_016504) TTS (NM_016504) 5886 NM_016504 51264 Hs.7736 NM_016504 ENSG00000108826 MRPL27 L27mt mitochondrial ribosomal protein L27 protein-coding 273-11 chr18 7159190 7159526 + 1.5 NA Intergenic AluSc|SINE|Alu -41561 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 156-64 chr7 145909271 145909462 + 1.5 NA Intergenic Intergenic -864905 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 121.5-33 chr14 58072152 58072285 + 1.5 NA intron (NM_001001872, intron 5 of 7) L2a|LINE|L2 79995 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 379.5-6 chr18 28284443 28284884 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -107533 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 139-21 chr14 79330599 79330784 + 1.5 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 51311 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 293-6 chr14 28288606 28289072 + 1.5 NA Intergenic Intergenic 476480 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 175-36 chr21 28084417 28084649 + 1.5 NA intron (NR_126010, intron 1 of 4) HSMAR2|DNA|TcMar-Mariner -5870 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 213-37 chr5 162340612 162340918 + 1.5 NA Intergenic L1MC3|LINE|L1 273123 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 290-3 chr10 84006267 84006564 + 1.5 NA Intergenic Intergenic -133094 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 176.5-69 chr4 73724537 73724709 + 1.5 NA Intergenic Intergenic -15946 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 247-31 chr7 30375214 30375551 + 1.5 NA Intergenic Intergenic 5332 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 188.25-58 chr9 106771069 106771298 + 1.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -91983 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 147.5-78 chr7 103086470 103086639 + 1.5 NA intron (NM_031905, intron 3 of 6) intron (NM_031905, intron 3 of 6) 11414 NM_001161010 83787 Hs.287412 NM_031905 ENSG00000170632 ARMC10 PNAS-112|PNAS112|PSEC0198|SVH armadillo repeat containing 10 protein-coding 136-20 chr14 76636713 76636818 + 1.5 NA Intergenic L1ME1|LINE|L1 -124703 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 254.75-8 chr12 64737460 64737848 + 1.5 NA intron (NM_002076, intron 8 of 13) L1MC5a|LINE|L1 21752 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 265-20 chr3 40559166 40559467 + 1.5 NA Intergenic HERV35I-int|LTR|ERV1 34356 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 260.5-12 chr17 43683136 43683451 + 1.5 NA Intergenic MIRc|SINE|MIR -21371 NM_001040002 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 287-7 chr2 19366635 19366933 + 1.5 NA Intergenic Intergenic -8161 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 116.25-20 chr12 118390881 118390982 + 1.5 NA intron (NM_022491, intron 5 of 11) intron (NM_022491, intron 5 of 11) 14376 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 187.5-92 chrX 69780249 69780390 + 1.5 NA intron (NM_001005613, intron 2 of 2) MER58A|DNA|hAT-Charlie 164206 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 213.5-32 chr22 28564380 28564620 + 1.5 NA intron (NM_001145418, intron 2 of 22) Charlie24|DNA|hAT-Charlie 104631 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 118-49 chr4 74882980 74883098 + 1.5 NA Intergenic Intergenic -50077 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 172.5-62 chr5 40310869 40311001 + 1.5 NA Intergenic MLT1M|LTR|ERVL-MaLR 258644 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 135.5-32 chr14 56997467 56997644 + 1.5 NA Intergenic Intergenic 184397 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 225-9 chr12 51500230 51500470 + 1.5 NA intron (NM_001039960, intron 22 of 24) intron (NM_001039960, intron 22 of 24) 75233 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 153.25-59 chr9 84521806 84522064 + 1.5 NA Intergenic Intergenic -146523 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 230.25-29 chr6 150334483 150334678 + 1.5 NA Intergenic ERVL-B4-int|LTR|ERVL -34432 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 182-22 chr2 29185041 29185345 + 1.5 NA Intergenic Intergenic 38707 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 167.25-52 chr3 125384442 125384641 + 1.5 NA Intergenic AluSx1|SINE|Alu -9187 NM_001348430 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 178-56 chr9 127983475 127983658 + 1.5 NA Intergenic MIRb|SINE|MIR -2577 NM_001035254 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 258.5-3 chr11 55511452 55511651 + 1.5 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat -42718 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 186.75 chr1 50857575 50857796 + 1.5 NA intron (NM_007051, intron 2 of 18) intron (NM_007051, intron 2 of 18) 102582 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 284.5-17 chr2 222386173 222386396 + 1.5 NA Intergenic AluJo|SINE|Alu -37704 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 283.5-15 chr3 167422090 167422558 + 1.5 NA Intergenic Intergenic 29528 NR_126353 104310350 Hs.581631 NR_126353 ENSG00000241669 LINC01327 TCONS_00005644 long intergenic non-protein coding RNA 1327 ncRNA 167-32 chr2 99335126 99335273 + 1.5 NA intron (NM_005783, intron 1 of 4) intron (NM_005783, intron 1 of 4) 1134 NM_005783 10190 Hs.536122 NM_005783 ENSG00000115514 TXNDC9 APACD|PHLP3 thioredoxin domain containing 9 protein-coding 158.5-53 chr2 12176817 12176984 + 1.5 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -22230 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 259-28 chr5 39269784 39270065 + 1.5 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 725 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 227.5-28 chr2 227822679 227822993 + 1.5 NA Intergenic L2|LINE|L2 8994 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 245.5-8 chr14 63286605 63286916 + 1.5 NA intron (NM_020663, intron 4 of 4) intron (NM_020663, intron 4 of 4) 32175 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 150-57 chr4 87089155 87089336 + 1.5 NA intron (NM_005935, intron 4 of 19) intron (NM_005935, intron 4 of 19) 82244 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 122.25-99 chr9 28750142 28750242 + 1.5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -30887 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 295.75-10 chr3 50706197 50706424 + 1.5 NA intron (NM_004947, intron 1 of 52) L1MA4|LINE|L1 31230 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 123.75-55 chr2 110686200 110686285 + 1.5 NA Intergenic Intergenic -8135 NM_001278617 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 190.5-12 chr10 100156181 100156369 + 1.5 NA intron (NR_144760, intron 8 of 10) intron (NR_144760, intron 8 of 10) 29754 NR_144755 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 186.75-24 chr18 11136413 11136599 + 1.5 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 12256 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 179.5-47 chr17 65988142 65988368 + 1.5 NA intron (NM_001353129, intron 17 of 26) L1M3f|LINE|L1 -161712 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 136.5-37 chr15 34162004 34162156 + 1.5 NA intron (NM_024713, intron 2 of 9) intron (NM_024713, intron 2 of 9) 48016 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 230.25-7 chr15 60384413 60384637 + 1.5 NA intron (NM_001002857, intron 3 of 13) intron (NM_001002857, intron 3 of 13) 13461 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 263-17 chr4 37102966 37103180 + 1.5 NA Intergenic L1P1|LINE|L1 101294 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 160-33 chr4 121957079 121957220 + 1.5 NA Intergenic Intergenic -5089 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 161.75-21 chr15 82149811 82150077 + 1.5 NA intron (NM_001040610, intron 16 of 17) intron (NM_001040610, intron 16 of 17) 61350 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 275.25-17 chr20 60144509 60144750 + 1.5 NA intron (NR_046099, intron 1 of 4) MER41D|LTR|ERV1 6137 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 237-9 chr13 103920880 103921069 + 1.5 NA Intergenic Intergenic 495774 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 217.5-26 chr20 44540274 44540527 + 1.5 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) 8525 NM_007066 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 185.5-67 chr6 165031410 165031615 + 1.5 NA Intergenic Intergenic -209449 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 252.25-17 chr5 5033540 5033795 + 1.5 NA promoter-TSS (NR_026994) promoter-TSS (NR_026994) -692 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 193.5-29 chr2 107169009 107169187 + 1.5 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 180427 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 376.5-2 chr10 115336317 115336750 + 1.5 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 243168 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 221.75-9 chr17 61065765 61065953 + 1.5 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 301845 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 165-34 chr2 170335231 170335402 + 1.5 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 15627 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 194.25-24 chr2 33013321 33013669 + 1.5 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 66542 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 240-18 chr3 112654108 112654417 + 1.5 NA Intergenic Intergenic -13119 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 214.25-24 chr22 48119437 48119823 + 1.5 NA Intergenic Intergenic -154734 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 125-81 chr5 128757788 128757967 + 1.5 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -207250 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 206.25-27 chr4 178232159 178232396 + 1.5 NA Intergenic Intergenic -324341 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 216.25-40 chr8 97287160 97287462 + 1.5 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) -9383 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 142-56 chr5 109241697 109241853 + 1.5 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 84594 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 253.5-8 chr11 39009360 39009573 + 1.5 NA Intergenic Intergenic 360608 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 170.75-38 chr2 54374613 54374941 + 1.5 NA Intergenic Intergenic 43893 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 169.5-45 chr2 194117330 194117547 + 1.5 NA Intergenic Intergenic -226831 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 169-57 chr9 119796409 119796626 + 1.5 NA Intergenic Intergenic -138543 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 209.25-23 chr21 15831354 15831517 + 1.5 NA exon (NM_001352561, exon 16 of 24) exon (NM_001352561, exon 16 of 24) 101453 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 162.5-9 chr1 248006792 248006990 + 1.5 NA intron (NM_001304535, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR -15057 NM_001258284 81466 Hs.742583 NM_001258284 ENSG00000197454 OR2L5 OR2L11|OR2L5P olfactory receptor family 2 subfamily L member 5 protein-coding 165-49 chr7 97112526 97112758 + 1.5 NA Intergenic Intergenic -3951 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 190-2 chr10 22624224 22624440 + 1.5 NA intron (NM_005028, intron 1 of 9) Charlie7|DNA|hAT-Charlie 89776 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 256.5-29 chr5 25900671 25900963 + 1.5 NA Intergenic Intergenic 709864 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 245.5-27 chr4 79458358 79458762 + 1.5 NA Intergenic MER47A|DNA|TcMar-Tigger -34033 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 354.75-9 chr7 81302525 81302853 + 1.5 NA Intergenic Intergenic 259130 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 238-15 chr15 70244569 70244752 + 1.5 NA Intergenic Intergenic -146743 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 335.25-14 chr6 70710913 70711259 + 1.5 NA intron (NM_001281440, intron 1 of 10) Tigger3b|DNA|TcMar-Tigger 42556 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 317.25-3 chr10 24917420 24917879 + 1.5 NA intron (NM_020200, intron 3 of 8) HAL1|LINE|L1 34957 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 216.75-43 chr8 104016990 104017214 + 1.5 NA intron (NM_001348497, intron 18 of 22) intron (NM_001348497, intron 18 of 22) 197882 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 282-6 chr10 57037313 57037628 + 1.5 NA Intergenic L1MA6|LINE|L1 267089 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 132-2 chr1 158691150 158691248 + 1.5 NA Intergenic Intergenic -4484 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 192-30 chr2 105245282 105245488 + 1.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 3642 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 163.25-65 chr7 10037805 10037920 + 1.5 NA Intergenic Intergenic 403592 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 134-21 chr11 134669908 134670077 + 1.5 NA Intergenic Intergenic -65953 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 375.75-11 chr9 121237004 121237418 + 1.5 NA intron (NM_001353053, intron 6 of 25) intron (NM_001353053, intron 6 of 25) -30951 NM_001127665 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 211.5-40 chr5 31033562 31033727 + 1.5 NA Intergenic Intergenic -160042 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 158.25-70 chr8 135353266 135353423 + 1.5 NA Intergenic Intergenic -104112 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 222-28 chr4 32157452 32157671 + 1.5 NA Intergenic Intergenic -135139 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 390.75-5 chr3 71052871 71053226 + 1.5 NA intron (NR_146142, intron 8 of 19) intron (NR_146142, intron 8 of 19) 11876 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 136.75-25 chr13 74030879 74031040 + 1.5 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 102970 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 372.75-4 chr2 121643832 121644292 + 1.5 NA intron (NM_015282, intron 1 of 38) MIR|SINE|MIR 5400 NM_001142274 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 173.5-84 chr5 83950050 83950321 + 1.5 NA intron (NM_001278642, intron 9 of 9) MER77|LTR|ERVL -229330 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 133.25-34 chr17_KI270729v1_random 43364 43455 + 1.5 NA NA (GAATG)n|Satellite|Satellite NA NA 168.75-24 chr2 82833170 82833371 + 1.5 NA Intergenic Intergenic -23533 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 252.75-22 chr4 33676465 33676734 + 1.5 NA Intergenic L1ME2|LINE|L1 363294 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 202.5-47 chr6 85682648 85682807 + 1.5 NA Intergenic Intergenic -3994 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 224-8 chr16 12917188 12917436 + 1.5 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 15714 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 203.5-17 chr15 88300593 88300774 + 1.5 NA Intergenic Intergenic -43944 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 259.5-11 chr14 45540316 45540636 + 1.5 NA Intergenic L1PB1|LINE|L1 175126 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 441.5 chr10 23167362 23167853 + 1.5 NA Intergenic L1ME3B|LINE|L1 -24705 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 379.5-5 chr14 78763732 78764053 + 1.5 NA intron (NR_073547, intron 8 of 20) LTR86B1|LTR|ERVL 360173 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 167-66 chr8 83919903 83920114 + 1.5 NA Intergenic MER67D|LTR|ERV1 -262779 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 194.5-61 chr5 79951571 79951819 + 1.5 NA intron (NR_131226, intron 2 of 2) intron (NR_131226, intron 2 of 2) 15116 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 131-55 chr5 58268807 58269005 + 1.5 NA Intergenic Intergenic -146565 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 151.5-57 chr4 35077269 35077387 + 1.5 NA Intergenic HAL1|LINE|L1 -807581 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 297.75-16 chr5 19835970 19836329 + 1.5 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 50123 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 201-5 chr10 29751945 29752179 + 1.5 NA Intergenic L2c|LINE|L2 -15126 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 242-20 chr16 79856319 79856524 + 1.5 NA Intergenic LTR9B|LTR|ERV1 61172 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 236.5-4 chr1 216507226 216507697 + 1.5 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -84013 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 139.25-47 chr2 40424029 40424288 + 1.5 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 6146 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 216-21 chr2 100808609 100808878 + 1.5 NA Intergenic L2b|LINE|L2 -11396 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 162.75-79 chr9 127458559 127458896 + 1.5 NA intron (NM_001190723, intron 6 of 24) intron (NM_001190723, intron 6 of 24) 6472 NM_001005374 90678 Hs.495188 NM_138361 ENSG00000148356 LRSAM1 CMT2P|RIFLE|TAL leucine rich repeat and sterile alpha motif containing 1 protein-coding 281.25-10 chr5 8992603 8992953 + 1.5 NA Intergenic Intergenic 61117 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 183.75-25 chr16 26904843 26905021 + 1.5 NA Intergenic Intergenic -161995 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 321-9 chr20 12174811 12175218 + 1.5 NA Intergenic L2c|LINE|L2 257121 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 146-12 chr13 42502475 42502708 + 1.5 NA Intergenic MER105|DNA|hAT-Charlie -60145 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 280.25-3 chr11 105556329 105556546 + 1.5 NA Intergenic Intergenic -53636 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 260-33 chr8 10237477 10237855 + 1.5 NA intron (NM_001135670, intron 2 of 4) L2a|LINE|L2 142015 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 217-32 chr8 119026851 119027194 + 1.5 NA intron (NM_001324095, intron 1 of 7) LTR16A|LTR|ERVL -40225 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 165-6 chr10 65920513 65920634 + 1.5 NA exon (NM_013266, exon 18 of 18) exon (NM_013266, exon 18 of 18) 349148 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 200-43 chr6 109928883 109929080 + 1.5 NA Intergenic L1MC5a|LINE|L1 -49275 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 141-21 chr14 57260981 57261144 + 1.5 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 7843 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 119-28 chr15 22290637 22290735 + 1.5 NA Intergenic Intergenic 32072 NR_033735 646396 Hs.451294 NR_033735 REREP3 - arginine-glutamic acid dipeptide repeats pseudogene 3 pseudo 190-46 chr7 28650035 28650202 + 1.5 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -36015 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 273.25 chr1 153014799 153015094 + 1.5 NA Intergenic L1MB3|LINE|L1 13197 NM_001097589 6707 Hs.139322 NM_005416 ENSG00000163209 SPRR3 - small proline rich protein 3 protein-coding 176.5-21 chr12 60429309 60429500 + 1.5 NA Intergenic L2a|LINE|L2 740034 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 156-12 chr10 33270642 33270792 + 1.5 NA exon (NM_001330068, exon 3 of 16) exon (NM_001330068, exon 3 of 16) 63950 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 135.25-20 chr12 26615373 26615578 + 1.5 NA intron (NM_002223, intron 26 of 56) L1ME3D|LINE|L1 217719 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 151.75-83 chrUn_KI270438v1 105783 106021 + 1.5 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 136-19 chr14 74105288 74105413 + 1.5 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 20397 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 189.75-13 chr15 71222163 71222349 + 1.5 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -33197 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 158.75-39 chr2 240561530 240561787 + 1.5 NA promoter-TSS (NM_001354025) promoter-TSS (NM_001354025) -548 NM_001354026 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 128.5-101 chr9 95009717 95009890 + 1.5 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -55547 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 309.25-9 chr22 25084266 25084750 + 1.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 28184 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 229-5 chr1 190855142 190855331 + 1.5 NA Intergenic L1PA16|LINE|L1 230346 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 274.5-28 chr5 31172691 31173036 + 1.5 NA Intergenic Intergenic -20823 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 115-71 chr7 53020385 53020476 + 1.5 NA Intergenic L1MC2|LINE|L1 -15203 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 311.25-3 chr11 27654833 27655152 + 1.5 NA TTS (NM_001143806) TTS (NM_001143806) 4657 NM_170735 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 214.5-26 chr2 117444472 117444734 + 1.5 NA Intergenic Intergenic -370088 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 215-15 chr12 116514470 116514779 + 1.5 NA Intergenic Intergenic -18798 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 145-38 chr2 192216708 192216868 + 1.5 NA Intergenic Intergenic -21855 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 307.75-11 chr8 119356121 119356489 + 1.5 NA Intergenic LTR85b|LTR|Gypsy? 31134 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 160.5 chr1 80428114 80428279 + 1.5 NA Intergenic L4_A_Mam|LINE|RTE-X -107559 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 263-13 chr2 34763596 34763806 + 1.5 NA Intergenic Intergenic 86144 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 278-11 chr15 71321009 71321388 + 1.5 NA intron (NM_024817, intron 5 of 16) MIR3|SINE|MIR -132139 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 173.25-29 chr2 58669488 58669679 + 1.5 NA intron (NR_033873, intron 2 of 13) MER66B|LTR|ERV1 148830 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 471-3 chr9 79758873 79759271 + 1.5 NA Intergenic L1ME3D|LINE|L1 -65458 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 229-25 chr22 43842319 43842493 + 1.5 NA intron (NM_014351, intron 1 of 6) L1ME3|LINE|L1 20107 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 156.75-39 chr17 32663733 32663873 + 1.5 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 176810 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 174-49 chr6 45578646 45578778 + 1.5 NA Intergenic (CTTTCC)n|Simple_repeat|Simple_repeat 156437 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 226-11 chr16 10916779 10917040 + 1.5 NA intron (NR_104444, intron 13 of 17) L2a|LINE|L2 25559 NM_014015 28955 Hs.592051 NM_014015 ENSG00000182108 DEXI MYLE Dexi homolog protein-coding 234.5-5 chr10 71096862 71097115 + 1.5 NA Intergenic L1ME1|LINE|L1 -115582 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 246.75-2 chr1 163062258 163062499 + 1.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger -6228 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 141-75 chr7 46756149 46756274 + 1.5 NA Intergenic Intergenic -59089 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 303.5-5 chr12 29623221 29623477 + 1.5 NA intron (NM_001367875, intron 8 of 19) intron (NM_001367875, intron 8 of 19) -123656 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 246.5-6 chr16 85012940 85013134 + 1.5 NA Intergenic MER34A1|LTR|ERV1 -1502 NM_017740 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 135.5-12 chr10 96349118 96349339 + 1.5 NA intron (NM_033207, intron 4 of 5) intron (NM_033207, intron 4 of 5) 7931 NM_001284326 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 251-29 chr7 33160797 33161000 + 1.5 NA intron (NM_198428, intron 4 of 22) MER57-int|LTR|ERV1 31334 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 138.75-55 chr4 147192480 147192588 + 1.5 NA Intergenic MIRb|SINE|MIR 152183 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 176.5-87 chr9 85494110 85494249 + 1.5 NA Intergenic Intergenic 247850 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 239.5-20 chr4 53443547 53443762 + 1.5 NA intron (NM_001134938, intron 11 of 14) intron (NM_001134938, intron 11 of 14) -56423 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 266-14 chr3 24361094 24361367 + 1.5 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -132857 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 188-31 chr5 122263572 122263902 + 1.5 NA Intergenic Intergenic -47954 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 196.25-19 chr14 84499401 84499714 + 1.5 NA Intergenic Intergenic -772375 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 195.5-11 chr10 96725413 96725581 + 1.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -4983 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 192.75-19 chr20 10585266 10585569 + 1.5 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 64278 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 286.5-12 chr6 37768534 37768752 + 1.5 NA Intergenic Intergenic -51084 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 220.5-29 chr20 17358719 17358903 + 1.5 NA intron (NM_002594, intron 3 of 11) intron (NM_002594, intron 3 of 11) 131771 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 198.5-5 chr10 55827833 55827987 + 1.5 NA Intergenic Intergenic -199968 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 197-42 chr5 30385397 30385698 + 1.5 NA Intergenic L1MC2|LINE|L1 504987 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 184-48 chr6 120409243 120409460 + 1.5 NA Intergenic Intergenic 394172 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 335.5-5 chr18 11218581 11218822 + 1.5 NA Intergenic Intergenic -69939 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 212.25-11 chr11 108021690 108021943 + 1.5 NA intron (NM_003478, intron 1 of 18) AluJr|SINE|Alu 12918 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 250.25-17 chr4 122129525 122129707 + 1.5 NA Intergenic L1MCa|LINE|L1 -40987 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 132.75-5 chr1 98719113 98719210 + 1.5 NA intron (NR_033716, intron 8 of 8) MIR|SINE|MIR 57440 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 205-31 chr3 149903207 149903496 + 1.5 NA intron (NM_183383, intron 5 of 8) intron (NM_183383, intron 5 of 8) 67544 NM_002628 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 160.5-69 chr7 19947022 19947152 + 1.5 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -173470 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 266.75-11 chr8 81553990 81554489 + 1.5 NA Intergenic Intergenic -22849 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 290.5-4 chr1 217826373 217826662 + 1.5 NA intron (NM_138796, intron 9 of 10) L1ME3D|LINE|L1 -41397 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 310.5-9 chr21 32101767 32102032 + 1.5 NA Intergenic Intergenic -15604 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 244.5-30 chr5 5035908 5036185 + 1.5 NA intron (NR_026994, intron 1 of 6) intron (NR_026994, intron 1 of 6) 1687 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 392.5-2 chr1 56529708 56530152 + 1.5 NA intron (NM_003713, intron 2 of 5) intron (NM_003713, intron 2 of 5) 49633 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 152.25-44 chr4 101097631 101097779 + 1.5 NA intron (NM_001130691, intron 5 of 12) intron (NM_001130691, intron 5 of 12) 143167 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 147.25-35 chr20 1564223 1564409 + 1.5 NA TTS (NM_001083910) TTS (NM_001083910) -6611 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 143.5-24 chr12 47081453 47081578 + 1.5 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -1556 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 317.25-9 chr16 89554170 89554491 + 1.5 NA intron (NM_001363850, intron 15 of 17) intron (NM_001363850, intron 15 of 17) -6327 NM_000977 6137 Hs.410817 NM_000977 ENSG00000167526 RPL13 BBC1|D16S444E|D16S44E|L13 ribosomal protein L13 protein-coding 117.75-19 chr13 41353308 41353460 + 1.5 NA intron (NM_001110798, intron 9 of 10) intron (NM_001110798, intron 9 of 10) -41346 NM_001354074 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 238-10 chr12 47016211 47016398 + 1.5 NA Intergenic Intergenic -63299 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 152-17 chr11 83503333 83503452 + 1.5 NA intron (NM_001142699, intron 21 of 27) (TA)n|Simple_repeat|Simple_repeat 179033 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 192.5-38 chr22 30736574 30736840 + 1.5 NA intron (NM_030758, intron 1 of 13) L1MC4a|LINE|L1 5150 NR_036171 100422912 NR_036171 ENSG00000264661 MIR3200 mir-3200 microRNA 3200 ncRNA 277.5-9 chr17 61991377 61991646 + 1.5 NA intron (NM_005121, intron 11 of 29) AluSc|SINE|Alu -63529 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 286-7 chr10 111899692 111900030 + 1.5 NA Intergenic Intergenic 283904 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 229.5-28 chr2 71953867 71954124 + 1.5 NA Intergenic L1MC1|LINE|L1 193867 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 184.5-69 chr6 71553194 71553395 + 1.5 NA Intergenic L1PBa|LINE|L1 132267 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 205-40 chr7 44491690 44491836 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -1105 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 156.25-22 chr14 86420536 86420676 + 1.5 NA Intergenic AluY|SINE|Alu -485172 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 186-5 chr1 119756505 119756746 + 1.5 NA intron (NM_005518, intron 5 of 9) intron (NM_005518, intron 5 of 9) 12307 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 240.5-32 chr22 29636249 29636489 + 1.5 NA intron (NR_156186, intron 2 of 16) intron (NR_156186, intron 2 of 16) 32736 NM_181830 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 189.5-49 chr5 11332698 11332919 + 1.5 NA intron (NM_001288715, intron 8 of 20) THE1B|LTR|ERVL-MaLR 256109 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 242.5-19 chr2 220093447 220093659 + 1.5 NA Intergenic Intergenic -186988 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 352.5-4 chr12 20967016 20967422 + 1.5 NA intron (NM_001371097, intron 13 of 15) MER4-int|LTR|ERV1 -48477 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 179.75-17 chr15 69224626 69224874 + 1.5 NA intron (NM_001324092, intron 2 of 3) L1MB3|LINE|L1 64115 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 259.75-14 chr3 42936369 42936706 + 1.5 NA non-coding (NR_122033, exon 1 of 2) non-coding (NR_122033, exon 1 of 2) 195 NM_001205272 100506243 Hs.720172 NM_015673 ENSG00000240747 KRBOX1 - KRAB box domain containing 1 protein-coding 129-86 chr9 76895285 76895430 + 1.5 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 10730 NM_001308047 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 166.5-30 chr14 43883597 43883844 + 1.5 NA Intergenic Intergenic 623563 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 130-35 chr2 62389335 62389489 + 1.5 NA Intergenic AluJo|SINE|Alu 116783 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 266-10 chr2 21517172 21517357 + 1.5 NA Intergenic Intergenic 193388 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 302.5-17 chr7 118452058 118452376 + 1.5 NA Intergenic LTR37B|LTR|ERV1 227513 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 195.5-57 chr3 42248286 42248462 + 1.5 NA Intergenic Intergenic 15573 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 266.25 chr1 29713924 29714332 + 1.5 NA Intergenic MLT2B5|LTR|ERVL 323484 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 261-16 chr14 72286407 72286620 + 1.5 NA intron (NM_001370288, intron 2 of 16) L1MA10|LINE|L1 -230307 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 213-24 chr2 151157960 151158131 + 1.5 NA Intergenic L1MEg|LINE|L1 103818 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 264-29 chr8 79271321 79271596 + 1.5 NA Intergenic Intergenic -60730 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 216.75-15 chr14 21666139 21666400 + 1.5 NA TTS (NM_001001912) TTS (NM_001001912) 1186 NM_001001912 26686 Hs.547982 NM_001001912 ENSG00000221977 OR4E2 OR14-42 olfactory receptor family 4 subfamily E member 2 protein-coding 129.5-56 chr22 41380809 41380962 + 1.5 NA intron (NM_001145398, intron 1 of 3) intron (NM_001145398, intron 1 of 3) -1057 NM_003216 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 336-14 chr4 95745851 95746099 + 1.5 NA Intergenic Intergenic -94118 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 122-48 chr3 86550375 86550533 + 1.5 NA Intergenic Intergenic 68511 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 195.75-5 chr10 51514317 51514580 + 1.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 185147 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 253.5-10 chr12 53990954 53991185 + 1.5 NA promoter-TSS (NR_029617) promoter-TSS (NR_029617) -669 NR_029617 406973 NR_029617 ENSG00000207924 MIR196A2 MIRN196-2|MIRN196A2|mir-196a-2 microRNA 196a-2 ncRNA 488.25 chr9 37503479 37503997 + 1.5 NA TTS (NM_022490) TTS (NM_022490) 17790 NM_022490 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 285.5-21 chr8 100874528 100874838 + 1.5 NA Intergenic L2c|LINE|L2 75888 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 231.75-11 chr18 2797355 2797649 + 1.5 NA intron (NM_015295, intron 47 of 47) L2a|LINE|L2 -49504 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 179.75-5 chr10 9488814 9489051 + 1.5 NA Intergenic L1MD3|LINE|L1 -193339 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 124.75-15 chr10 60620238 60620336 + 1.5 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -47331 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 142-61 chr6 154860495 154860667 + 1.5 NA Intergenic Intergenic 7221 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 146.25-17 chr11 104695962 104696068 + 1.5 NA Intergenic Intergenic -86713 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 372.25 chr2 153774353 153774745 + 1.5 NA Intergenic Intergenic -97373 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 173.75-58 chr8 120905669 120905789 + 1.5 NA Intergenic MIRb|SINE|MIR -93683 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 289.5-16 chr20 57884225 57884458 + 1.5 NA Intergenic L1MC4|LINE|L1 -119563 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 235.25-9 chr14 50318517 50318707 + 1.5 NA intron (NM_001370605, intron 2 of 5) intron (NM_001370605, intron 2 of 5) 6288 NM_001003805 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 289.75 chr1 62952112 62952549 + 1.5 NA Intergenic Intergenic 58595 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 236.25-42 chr8 118194457 118194646 + 1.5 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -82732 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 364.25-3 chr17 39440704 39441235 + 1.5 NA intron (NM_004774, intron 3 of 16) intron (NM_004774, intron 3 of 16) 10294 NM_004774 5469 Hs.643754 NM_004774 ENSG00000125686 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 215-20 chr16 31211683 31211995 + 1.5 NA Intergenic L2a|LINE|L2 -2280 NM_001008274 493829 Hs.661859 NM_001008274 ENSG00000177238 TRIM72 MG53 tripartite motif containing 72 protein-coding 263-25 chr8 20115548 20115743 + 1.5 NA Intergenic Intergenic 67491 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 278-7 chr13 25498739 25499029 + 1.5 NA intron (NM_016529, intron 2 of 36) MIR|SINE|MIR 30110 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 213.5-19 chr16 79840889 79841107 + 1.5 NA Intergenic Intergenic 45749 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 202-17 chr3 96318073 96318256 + 1.5 NA Intergenic L1MA1|LINE|L1 -41800 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 230.5-57 chr8 101022540 101022848 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR -29360 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 200.25-22 chr17 74733226 74733399 + 1.5 NA intron (NM_175738, intron 2 of 8) intron (NM_175738, intron 2 of 8) -3248 NM_001330471 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 346.5 chr1 12303298 12303534 + 1.5 NA intron (NM_015378, intron 25 of 69) intron (NM_015378, intron 25 of 69) 73386 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 290.5-5 chr10 15571958 15572234 + 1.5 NA intron (NM_001291494, intron 24 of 28) intron (NM_001291494, intron 24 of 28) 147826 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 231-13 chr15 58805303 58805620 + 1.5 NA intron (NM_001040450, intron 3 of 8) intron (NM_001040450, intron 3 of 8) 34159 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 195-3 chr1 115397849 115398092 + 1.5 NA Intergenic Intergenic -59734 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 218-50 chrX 82223420 82223578 + 1.5 NA Intergenic L1M4b|LINE|L1 1021397 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 238.5-6 chr10 14926746 14926986 + 1.5 NA non-coding (NR_146962, exon 11 of 15) non-coding (NR_146962, exon 11 of 15) 27230 NM_001350967 64421 Hs.655932 NM_022487 ENSG00000152457 DCLRE1C A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C DNA cross-link repair 1C protein-coding 242.5-30 chr4 161988167 161988359 + 1.5 NA intron (NM_001128428, intron 3 of 14) intron (NM_001128428, intron 3 of 14) -34470 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 167.25-20 chr11 115471176 115471324 + 1.5 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 33165 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 262-23 chr4 165383149 165383527 + 1.5 NA intron (NM_001873, intron 1 of 8) intron (NM_001873, intron 1 of 8) -2904 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 184.5-75 chr8 60251818 60252140 + 1.5 NA intron (NR_135821, intron 3 of 9) intron (NR_135821, intron 3 of 9) 29421 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 165.75-38 chr20 64024190 64024386 + 1.5 NA intron (NM_012469, intron 13 of 20) intron (NM_012469, intron 13 of 20) -9439 NM_001348090 284739 Hs.97840 NM_207349 ENSG00000196421 C20orf204 LINC00176|NCRNA00176|PRR17 chromosome 20 open reading frame 204 protein-coding 241.5-41 chr9 88019598 88019847 + 1.5 NA Intergenic AluSx1|SINE|Alu -44942 NM_001170640 23552 Hs.522274 NM_012119 ENSG00000156345 CDK20 CCRK|CDCH|P42|PNQALRE cyclin dependent kinase 20 protein-coding 180.5-91 chr8 124272610 124272755 + 1.5 NA Intergenic Intergenic -25284 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 299-2 chr1 168152807 168153036 + 1.5 NA Intergenic AluY|SINE|Alu -15254 NM_001349632 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 156.5-51 chr4 44725557 44725739 + 1.5 NA intron (NM_001270880, intron 1 of 5) intron (NM_001270880, intron 1 of 5) 908 NM_138335 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 209.25-32 chr5 25729167 25729363 + 1.5 NA Intergenic MER31A|LTR|ERV1 538312 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 190.5-24 chr13 102912497 102912673 + 1.5 NA Intergenic L1MA8|LINE|L1 32486 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 201.75-40 chr8 126065387 126065633 + 1.5 NA Intergenic Intergenic -114313 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 164.5-70 chr5 18168971 18169131 + 1.5 NA Intergenic L1M4|LINE|L1 361777 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 227-30 chr6 44498571 44498830 + 1.5 NA Intergenic Intergenic 53181 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 154.75-31 chr2 123267807 123268088 + 1.5 NA Intergenic L2a|LINE|L2 -194466 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 166.5-3 chr1 26259145 26259291 + 1.5 NA intron (NM_022778, intron 6 of 13) MIR3|SINE|MIR -10061 NM_001281518 64793 Hs.63795 NM_022778 ENSG00000130695 CEP85 CCDC21 centrosomal protein 85 protein-coding 166.5-42 chr16 86952362 86952528 + 1.5 NA Intergenic Intergenic -105339 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 187.5-23 chr14 79854330 79854493 + 1.5 NA intron (NR_073547, intron 20 of 20) intron (NR_073547, intron 20 of 20) -357008 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 122.75-46 chr2 102630204 102630290 + 1.5 NA intron (NM_003048, intron 1 of 11) L1MEd|LINE|L1 10694 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 215.25-5 chr10 80505980 80506133 + 1.5 NA intron (NM_030927, intron 3 of 8) AluSz6|SINE|Alu 29886 NR_120661 101929574 Hs.593663 NR_120661 ENSG00000226659 LOC101929574 - uncharacterized LOC101929574 ncRNA 250.5-17 chr19 33045932 33046175 + 1.5 NA intron (NM_033103, intron 1 of 14) L1MB7|LINE|L1 18835 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 277-15 chr2 133441868 133442291 + 1.5 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 126384 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 260.5-4 chr10 112163182 112163447 + 1.5 NA intron (NM_001244949, intron 14 of 21) intron (NM_001244949, intron 14 of 21) 20451 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 173.5-97 chr7 52403821 52404019 + 1.5 NA Intergenic L1MEc|LINE|L1 -631713 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 171.75-43 chr5 93648477 93648673 + 1.5 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -27787 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 123.75-77 chr3 164409207 164409358 + 1.5 NA Intergenic Intergenic -237726 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 139-75 chrX 79360897 79361067 + 1.5 NA 3' UTR (NM_004867, exon 6 of 6) 3' UTR (NM_004867, exon 6 of 6) 6352 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 222.5-7 chr10 81882622 81882913 + 1.5 NA intron (NR_163252, intron 1 of 8) intron (NR_163252, intron 1 of 8) 5080 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 177.25-22 chr2 52726384 52726616 + 1.5 NA Intergenic Intergenic -23885 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 306-20 chr5 117703983 117704346 + 1.5 NA Intergenic Intergenic -26197 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 153.75-17 chr12 26508862 26509014 + 1.5 NA intron (NM_002223, intron 37 of 56) L1MB7|LINE|L1 313365 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 145.5-71 chr4 155593718 155593828 + 1.5 NA Intergenic Intergenic -72937 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 267-2 chr11 67299497 67299733 + 1.5 NA intron (NM_207354, intron 8 of 14) intron (NM_207354, intron 8 of 14) -3915 NM_017857 54961 Hs.29173 NM_017857 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 226.5-8 chr11 5441395 5441577 + 1.5 NA promoter-TSS (NM_001005288) promoter-TSS (NM_001005288) 67 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 253-19 chr3 95999129 95999408 + 1.5 NA Intergenic L1MC1|LINE|L1 -316075 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 119.75-88 chr8 126108707 126108873 + 1.5 NA Intergenic Intergenic -157593 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 286-12 chr14 49398171 49398525 + 1.5 NA Intergenic L1PA15|LINE|L1 188032 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 235.5-43 chr5 16564313 16564524 + 1.5 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -51508 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 175.5-29 chr15 92123661 92123846 + 1.5 NA intron (NR_135775, intron 5 of 10) intron (NR_135775, intron 5 of 10) 269449 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 194.25-15 chr14 61959351 61959510 + 1.5 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 31735 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 128-27 chr2 81556101 81556240 + 1.5 NA Intergenic L1MC1|LINE|L1 -89224 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 230.5-33 chr3 102084534 102084805 + 1.5 NA Intergenic Intergenic -79036 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 216.5-14 chr16 26541866 26542126 + 1.5 NA Intergenic Intergenic 516759 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 243.5-7 chr14 56263545 56263855 + 1.5 NA intron (NM_021255, intron 2 of 5) L1M7|LINE|L1 145289 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 357.75-10 chr7 16532121 16532477 + 1.5 NA intron (NM_001195280, intron 1 of 8) intron (NM_001195280, intron 1 of 8) 5474 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 193.5-59 chr5 20589715 20589870 + 1.5 NA Intergenic Intergenic -14079 NM_001291956 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 134-47 chr22 27802169 27802309 + 1.5 NA promoter-TSS (NM_002430) promoter-TSS (NM_002430) -483 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 190.75-32 chr2 119018583 119018898 + 1.5 NA Intergenic L1ME3G|LINE|L1 76571 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 233.5-46 chr6 54852756 54853007 + 1.5 NA intron (NM_001010872, intron 1 of 4) MER30|DNA|hAT-Charlie 6110 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 153.75-31 chr15 98547487 98547637 + 1.5 NA Intergenic Intergenic -33226 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 248.25-18 chr2 203154186 203154509 + 1.5 NA intron (NM_001114132, intron 34 of 54) Tigger16a|DNA|TcMar-Tigger -84094 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 217.25-2 chr1 229946078 229946381 + 1.5 NA Intergenic AluSx1|SINE|Alu -52321 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 243.5-26 chr6 46455775 46456003 + 1.5 NA intron (NM_001251973, intron 2 of 4) (AGAAAA)n|Simple_repeat|Simple_repeat 35434 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 130.5-100 chr8 125241935 125242089 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 150152 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 258.75-23 chr4 136703449 136703768 + 1.5 NA Intergenic Intergenic -490148 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 214.75-21 chr20 42559417 42559689 + 1.5 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -125930 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 345-3 chr11 125721500 125721835 + 1.5 NA Intergenic Intergenic -24612 NM_138294 160065 Hs.148565 NM_138294 ENSG00000171053 PATE1 PATE prostate and testis expressed 1 protein-coding 170-41 chr4 57452126 57452268 + 1.5 NA intron (NR_125907, intron 4 of 5) L1MA8|LINE|L1 26325 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 195.5-14 chr11 82472916 82473061 + 1.5 NA Intergenic L1MD2|LINE|L1 -69075 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 191-12 chr14 67101505 67101680 + 1.5 NA intron (NM_001024218, intron 12 of 21) Tigger13a|DNA|TcMar-Tigger -87848 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 175.5-75 chr7 90615457 90615621 + 1.5 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 19218 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 279.5-7 chr2 129405282 129405771 + 1.5 NA Intergenic FLAM_C|SINE|Alu -131635 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 235.5-44 chr5 33343946 33344226 + 1.5 NA Intergenic Intergenic -96610 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 302.5-12 chr3 147960866 147961130 + 1.5 NA Intergenic Intergenic -117161 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 199.5-21 chr16 86626128 86626392 + 1.5 NA Intergenic Intergenic 47751 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 133-19 chr14 26944044 26944189 + 1.5 NA Intergenic Intergenic 35474 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 210.5-34 chr2 182794493 182794793 + 1.5 NA TTS (NM_018981) TTS (NM_018981) 71994 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 177.75-41 chr5 5438533 5438684 + 1.5 NA intron (NM_015325, intron 3 of 18) intron (NM_015325, intron 3 of 18) 15931 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 261.75-26 chr7 55025780 55025954 + 1.5 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 6835 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 168-18 chr11 31009239 31009403 + 1.5 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -16635 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 171-14 chr11 94480683 94480933 + 1.5 NA intron (NM_001330347, intron 4 of 19) MER5B|DNA|hAT-Charlie 13036 NM_001330347 4361 Hs.192649 NM_005590 ENSG00000020922 MRE11 ATLD|HNGS1|MRE11A|MRE11B MRE11 homolog, double strand break repair nuclease protein-coding 115-34 chr17 47000084 47000231 + 1.5 NA Intergenic Intergenic -20904 NM_203400 388394 Hs.367999 NM_203400 ENSG00000179673 RPRML - reprimo like protein-coding 205.5-51 chr7 3883709 3883898 + 1.5 NA intron (NM_152744, intron 5 of 44) L2|LINE|L2 -245882 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 185.5-44 chr20 41416423 41416674 + 1.5 NA intron (NM_032221, intron 33 of 36) intron (NM_032221, intron 33 of 36) -49730 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 193.25-5 chr10 66854356 66854580 + 1.5 NA intron (NM_001127384, intron 7 of 17) L2c|LINE|L2 -71568 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 404.25-2 chr18 46233642 46234167 + 1.5 NA intron (NM_001008239, intron 2 of 3) intron (NM_001008239, intron 2 of 3) 59870 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 180.25-62 chr7 74342597 74342808 + 1.5 NA intron (NM_032421, intron 3 of 15) AluSx1|SINE|Alu 53227 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 137.25-17 chr11 83541497 83541635 + 1.5 NA intron (NM_001142699, intron 20 of 27) intron (NM_001142699, intron 20 of 27) 140859 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 180-7 chr1 86833586 86833777 + 1.5 NA Intergenic Intergenic 80445 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 317.25-11 chr2 162329177 162329521 + 1.5 NA intron (NM_001330265, intron 2 of 8) intron (NM_001330265, intron 2 of 8) 10367 NM_001330267 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 134-40 chr2 153868754 153869054 + 1.5 NA Intergenic Intergenic -3018 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 222.5-44 chr6 52687266 52687524 + 1.5 NA TTS (NM_014051) TTS (NM_014051) 16282 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 181.5-14 chr13 70148859 70149075 + 1.5 NA Intergenic Intergenic -40474 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 167-40 chr21 16284818 16284947 + 1.5 NA promoter-TSS (NR_145757) promoter-TSS (NR_145757) -114 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 204.5-52 chr6 139114777 139115055 + 1.5 NA Intergenic Intergenic -20164 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 175-44 chr4 48661884 48662105 + 1.5 NA intron (NM_015030, intron 3 of 63) L1MEc|LINE|L1 118305 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 127.5-105 chr6 34242246 34242431 + 1.5 NA intron (NM_001319080, intron 3 of 5) MIRb|SINE|MIR 1665 NR_106893 102465502 NR_106893 ENSG00000276404 MIR6835 hsa-mir-6835 microRNA 6835 ncRNA 174.5-30 chr15 95884165 95884356 + 1.5 NA Intergenic Intergenic 243581 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 287.5-13 chr18 23009244 23009622 + 1.5 NA intron (NM_203292, intron 16 of 17) L1MC5|LINE|L1 75557 NM_203291 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 243-11 chr19 32273102 32273393 + 1.5 NA Intergenic MIR3|SINE|MIR -72363 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 135.75-12 chr1 247155392 247155525 + 1.5 NA 3' UTR (NM_001297568, exon 4 of 4) 3' UTR (NM_001297568, exon 4 of 4) 16559 NM_001297569 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 247.5-20 chr22 25864905 25865085 + 1.5 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 122807 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 209-32 chr7 37491063 37491239 + 1.5 NA Intergenic L1ME4a|LINE|L1 -41825 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 245.25-9 chr15 65894357 65894531 + 1.5 NA TTS (NM_032445).2 TTS (NM_032445).2 24953 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 250.75-26 chr8 101281457 101281667 + 1.5 NA Intergenic Intergenic -75498 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 207.5-22 chr18 4222158 4222522 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -42262 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 182.5-72 chr8 129418732 129419005 + 1.5 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 65274 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 249.5-25 chr6 146690543 146690864 + 1.5 NA intron (NM_024694, intron 10 of 35) intron (NM_024694, intron 10 of 35) 91731 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 340.5-9 chr6 3267031 3267367 + 1.5 NA 3' UTR (NM_001135750, exon 2 of 2) 3' UTR (NM_001135750, exon 2 of 2) 8252 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 208-9 chr13 94564210 94564361 + 1.5 NA Intergenic AluSq2|SINE|Alu -14879 NM_001322184 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 145.75-29 chr18 63315902 63316178 + 1.5 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 3340 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 227.75-25 chr8 106299533 106299872 + 1.5 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 29524 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 180.5-10 chr10 107435968 107436315 + 1.5 NA Intergenic Intergenic -271435 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 143-10 chr11 14355906 14356118 + 1.5 NA intron (NM_001177314, intron 1 of 5) MIR|SINE|MIR 2473 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 204-37 chr6 126136025 126136350 + 1.5 NA Intergenic L1MA4|LINE|L1 149647 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 278-29 chr8 74543469 74543688 + 1.5 NA Intergenic Intergenic -4965 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 218-22 chr2 140889709 140890066 + 1.5 NA intron (NM_018557, intron 23 of 90) L1ME3Cz|LINE|L1 -303202 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 151.25-10 chr11 110658684 110658790 + 1.5 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 53088 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 166.5-104 chr9 27964593 27964736 + 1.5 NA intron (NM_001354574, intron 5 of 5) LTR78|LTR|ERV1 -390798 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 197-34 chr3 11501291 11501580 + 1.5 NA intron (NM_001349238, intron 17 of 17) intron (NM_001349238, intron 17 of 17) 67363 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 216.25-22 chr20 33655615 33655820 + 1.5 NA Intergenic Intergenic -6610 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 238-12 chr13 97275747 97275985 + 1.5 NA 5' UTR (NM_001306070, exon 2 of 8) 5' UTR (NM_001306070, exon 2 of 8) 53533 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 162.75-16 chr13 20051540 20051722 + 1.5 NA intron (NM_197968, intron 13 of 24) intron (NM_197968, intron 13 of 24) -51070 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 149-16 chr15 65269868 65269975 + 1.5 NA intron (NM_001316943, intron 2 of 5) intron (NM_001316943, intron 2 of 5) 15670 NR_145768 109617003 NR_145768 ENSG00000206903 SNORA24B - small nucleolar RNA, H/ACA box 24B snoRNA 185-13 chr14 67435093 67435310 + 1.5 NA Intergenic AluSx1|SINE|Alu 6729 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 163.25-25 chr14 60677128 60677300 + 1.5 NA Intergenic L1MEh|LINE|L1 -27737 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 203.5-12 chr13 91878956 91879110 + 1.5 NA intron (NM_004466, intron 5 of 7) intron (NM_004466, intron 5 of 7) 473174 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 309-13 chr20 58615855 58616082 + 1.5 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -18804 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 203.5-15 chr14 53410558 53410693 + 1.5 NA Intergenic L1PB3|LINE|L1 257271 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 256.5-34 chr5 133624710 133624988 + 1.5 NA Intergenic L1MD1|LINE|L1 -12308 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 134.5-78 chr5 116049388 116049538 + 1.5 NA Intergenic (TAAT)n|Simple_repeat|Simple_repeat -2003 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 154-26 chr17 66507061 66507240 + 1.5 NA intron (NM_002737, intron 3 of 16) L2c|LINE|L2 -90296 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 183.25-17 chr17 59759380 59759698 + 1.5 NA intron (NM_001329401, intron 4 of 9) L1MEc|LINE|L1 51885 NM_030938 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 270-6 chr10 128439400 128439624 + 1.5 NA Intergenic L1MC4|LINE|L1 153562 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 331.5 chr10 68111091 68111365 + 1.5 NA intron (NR_045663, intron 1 of 17) intron (NR_045663, intron 1 of 17) 1740 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 227-7 chr11 108324830 108325064 + 1.5 NA intron (NM_001351834, intron 46 of 63) intron (NM_001351834, intron 46 of 63) 101418 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 237-34 chr6 69662983 69663254 + 1.5 NA Intergenic Intergenic 133348 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 208.25-21 chr22 28418009 28418162 + 1.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -41784 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 193.5-38 chr3 14500025 14500168 + 1.5 NA intron (NM_001080423, intron 21 of 23) L1MEi|LINE|L1 40246 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 192-22 chr16 75155620 75155784 + 1.5 NA intron (NM_001318474, intron 2 of 2) L1ME3D|LINE|L1 6651 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 190.5-46 chr3 110691017 110691220 + 1.5 NA Intergenic Intergenic 378841 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 160.5-54 chr4 2468450 2468619 + 1.5 NA promoter-TSS (NM_001185010) promoter-TSS (NM_001185010) -572 NM_001185010 6047 Hs.66394 NM_002938 ENSG00000063978 RNF4 RES4-26|SLX5|SNURF ring finger protein 4 protein-coding 216-13 chr14 56954189 56954466 + 1.5 NA Intergenic Intergenic 141169 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 163-4 chr1 176520989 176521265 + 1.5 NA intron (NM_021936, intron 1 of 4) (AG)n|Simple_repeat|Simple_repeat 57952 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 173.75-37 chr4 182451813 182452122 + 1.5 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 208565 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 139.25-31 chr14 80620431 80620612 + 1.5 NA intron (NM_152446, intron 19 of 24) L1MEd|LINE|L1 321217 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 295.5-22 chr5 147094091 147094324 + 1.5 NA Intergenic Intergenic -12687 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 245.25-33 chr9 31263089 31263344 + 1.5 NA Intergenic Intergenic 118274 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 166.25-23 chr18 60708299 60708411 + 1.5 NA Intergenic L1MEf|LINE|L1 -335580 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 239.75-5 chr10 93836701 93836946 + 1.5 NA Intergenic L2c|LINE|L2 -57155 NM_001134658 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 214-8 chr11 5538657 5538900 + 1.5 NA Intergenic L1P4|LINE|L1 6745 NM_001005289 390067 Hs.554540 NM_001005289 ENSG00000181616 OR52H1 OR11-41|OR11-45 olfactory receptor family 52 subfamily H member 1 protein-coding 258.75-7 chr12 41705631 41705870 + 1.5 NA Intergenic L1MEc|LINE|L1 -58439 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 240-22 chr6 123623241 123623457 + 1.5 NA intron (NM_001256020, intron 1 of 8) intron (NM_001256020, intron 1 of 8) 13601 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 202.5-44 chr5 144408915 144409185 + 1.5 NA intron (NM_001370487, intron 2 of 2) L2a|LINE|L2 203659 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 167-21 chr17 35625382 35625515 + 1.5 NA intron (NM_001030006, intron 6 of 21) intron (NM_001030006, intron 6 of 21) 38126 NM_001282 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 192-39 chr4 92062352 92062493 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR 214880 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 177.25-34 chr4 85485806 85486051 + 1.5 NA intron (NM_001025616, intron 1 of 9) AluSz|SINE|Alu 10778 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 173.25-32 chr2 94990148 94990337 + 1.5 NA Intergenic L1MEd|LINE|L1 -35413 NM_022440 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 263.5-19 chr22 40599954 40600263 + 1.5 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 36611 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 179.25-51 chr8 112335879 112336019 + 1.5 NA intron (NM_001363185, intron 40 of 66) AluJb|SINE|Alu -307544 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 231.25-7 chr11 35415075 35415266 + 1.5 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 4388 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 209.25-20 chr20 4645999 4646192 + 1.5 NA Intergenic Intergenic -40361 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 142.5-98 chr8 126816606 126816730 + 1.5 NA Intergenic L1MC5|LINE|L1 -196486 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 287.5 chr1 23279090 23279755 + 1.5 NA Intergenic Intergenic 6096 NR_110616 100996511 Hs.99836 NR_110616 LINC01355 - long intergenic non-protein coding RNA 1355 ncRNA 197.5-39 chr20 1072713 1072973 + 1.5 NA Intergenic HAL1M8|LINE|L1 -40386 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 144-17 chr12 18208373 18208524 + 1.5 NA Intergenic Intergenic -53092 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 243 chr1 22622529 22622699 + 1.5 NA Intergenic MIR|SINE|MIR 10752 NR_106742 102466615 NR_106742 ENSG00000276835 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 216.25-43 chr8 110736562 110736735 + 1.5 NA Intergenic L1MD2|LINE|L1 290785 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 165.75-3 chr1 223814270 223814417 + 1.5 NA exon (NM_001031685, exon 3 of 18) exon (NM_001031685, exon 3 of 18) 31604 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 131.25-51 chr20 15074003 15074122 + 1.5 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -122778 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 253.25-10 chr14 64451134 64451451 + 1.5 NA intron (NM_001304508, intron 2 of 2) AluJo|SINE|Alu -14207 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 336.25-5 chr3 76531278 76531516 + 1.5 NA Intergenic Intergenic -508702 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 349-5 chr17 20201696 20202112 + 1.5 NA intron (NM_001033554, intron 1 of 5) Tigger2b_Pri|DNA|TcMar-Tigger 45832 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 173.25-21 chr16 53188231 53188529 + 1.5 NA intron (NM_001352127, intron 2 of 38) L1MB8|LINE|L1 -19585 NM_001352156 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 197-44 chr6 53611102 53611335 + 1.5 NA Intergenic Intergenic -17162 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 216.5-23 chr3 129652770 129653042 + 1.5 NA intron (NM_015008, intron 3 of 3) MER4D|LTR|ERV1 35826 NM_015008 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 392-3 chr2 162050685 162051122 + 1.5 NA intron (NM_001935, intron 2 of 25) MamRTE1|LINE|RTE-BovB 23312 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 129.75-26 chr14 49642415 49642638 + 1.5 NA Intergenic Intergenic -7296 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 154.5-24 chr12 76018436 76018667 + 1.5 NA Intergenic Intergenic 13225 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 163.5-28 chr13 90556792 90557005 + 1.5 NA Intergenic Intergenic 63610 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 234-26 chr2 163399451 163399841 + 1.5 NA Intergenic MIR|SINE|MIR 336362 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 130.5-111 chr9 106024894 106024999 + 1.5 NA Intergenic L1MC3|LINE|L1 330405 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 272.25-12 chr2 133205583 133205876 + 1.5 NA intron (NM_207481, intron 5 of 17) L1M5|LINE|L1 -60466 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 371-3 chr18 61292452 61292769 + 1.5 NA Intergenic Intergenic -40820 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 222.25-12 chr16 73620563 73620754 + 1.5 NA Intergenic Intergenic 233853 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 340-2 chr14 49204049 49204501 + 1.5 NA Intergenic Intergenic 382105 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 334 chr10 112566471 112566805 + 1.5 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -67532 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 131-7 chr1 200573082 200573223 + 1.5 NA intron (NM_014875, intron 22 of 29) intron (NM_014875, intron 22 of 29) 45686 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 155.25-3 chr1 234425929 234426114 + 1.5 NA intron (NM_005646, intron 19 of 29) MamSINE1|SINE|tRNA-RTE 52320 NM_001301733 388753 Hs.23198 NM_001012985 ENSG00000168275 COA6 C1orf31|CEMCOX4 cytochrome c oxidase assembly factor 6 protein-coding 204.75-17 chr16 51171465 51171615 + 1.5 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -20268 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 286.5-7 chr12 130561938 130562254 + 1.5 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 66360 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 218.25-50 chr9 23951504 23951781 + 1.5 NA Intergenic L1ME3G|LINE|L1 -101041 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 385.25-2 chr1 119045025 119045581 + 1.5 NA intron (NM_015836, intron 3 of 5) intron (NM_015836, intron 3 of 5) -2102 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 172.75-32 chr5 26732784 26733074 + 1.5 NA Intergenic L1PA16|LINE|L1 305657 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 204.5-56 chr7 21531766 21531942 + 1.5 NA Intergenic L1PA11|LINE|L1 -11185 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 187.5-10 chr10 107351316 107351519 + 1.5 NA Intergenic L1MEc|LINE|L1 -186711 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 190.5-5 chr1 182730920 182731080 + 1.5 NA Intergenic Intergenic 18138 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 155-24 chr17 60251737 60251928 + 1.5 NA intron (NM_032582, intron 11 of 33) intron (NM_032582, intron 11 of 33) -20187 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 210.75-39 chr9 108963658 108963817 + 1.5 NA intron (NM_003798, intron 11 of 18) intron (NM_003798, intron 11 of 18) 29337 NM_017832 54942 Hs.29276 NM_017832 ENSG00000119328 ABITRAM C9orf6|CG-8|FAM206A|Simiate actin binding transcription modulator protein-coding 143.25-34 chr18 1096983 1097099 + 1.5 NA Intergenic Intergenic -169048 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 113-73 chr4 187085401 187085556 + 1.5 NA Intergenic Intergenic -116508 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 356.25-8 chr3 119993121 119993522 + 1.5 NA intron (NM_002093, intron 2 of 11) L1MC4|LINE|L1 91327 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 260-32 chr7 6043018 6043212 + 1.5 NA intron (NM_014413, intron 7 of 14) intron (NM_014413, intron 7 of 14) 11739 NM_001271700 100310846 Hs.744468 NM_001271700 ENSG00000157999 ANKRD61 - ankyrin repeat domain 61 protein-coding 144-56 chr4 156258041 156258143 + 1.5 NA Intergenic Intergenic -304226 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 216-6 chr10 53438311 53438546 + 1.5 NA Intergenic Intergenic -666728 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 552.25 chr11 93958257 93959054 + 1.5 NA Intergenic Intergenic -62699 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 295.5-19 chr4 76500687 76500993 + 1.5 NA intron (NM_020859, intron 1 of 10) AluJr4|SINE|Alu 65611 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 156-17 chr11 40083510 40083663 + 1.5 NA Intergenic Intergenic 209544 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 217.5-52 chr9 129197560 129197731 + 1.5 NA Intergenic AluJb|SINE|Alu -19384 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 334-9 chr6 64819165 64819447 + 1.5 NA intron (NM_001292009, intron 21 of 43) intron (NM_001292009, intron 21 of 43) -482112 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 138.5-89 chr5 141417314 141417443 + 1.5 NA promoter-TSS (NM_032101) promoter-TSS (NM_032101) -299 NM_018927 56099 Hs.368160 NM_018927 ENSG00000254122 PCDHGB7 ME6|PCDH-GAMMA-B7 protocadherin gamma subfamily B, 7 protein-coding 261.5-5 chr13 86969143 86969420 + 1.5 NA Intergenic Intergenic 57361 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 194-17 chr14 73672943 73673214 + 1.5 NA intron (NM_001201366, intron 6 of 8) intron (NM_001201366, intron 6 of 8) 28092 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 326.75-5 chr2 145909659 145910106 + 1.5 NA Intergenic Intergenic -677175 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 254-22 chrX 155022925 155023313 + 1.5 NA promoter-TSS (NM_000132) promoter-TSS (NM_000132) -396 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 249.5-29 chr7 36769442 36769628 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -44986 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 258.75-8 chr13 42058905 42059187 + 1.5 NA intron (NM_178009, intron 1 of 29) MIRb|SINE|MIR 10398 NM_178009 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 183.75-31 chr2 123200898 123201137 + 1.5 NA Intergenic Intergenic -127536 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 159-13 chr12 14572472 14572589 + 1.5 NA intron (NR_120465, intron 2 of 5) MER119|DNA|hAT-Charlie -4647 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 187-14 chr17 55609827 55610119 + 1.5 NA Intergenic Intergenic 112891 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 245-39 chr9 16646497 16646745 + 1.5 NA intron (NM_001317940, intron 2 of 5) L1ME2|LINE|L1 -80193 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 222-25 chr3 327493 327678 + 1.5 NA intron (NM_001253388, intron 2 of 24) L1ME4a|LINE|L1 7902 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 142.5-58 chr3 195305190 195305327 + 1.5 NA intron (NM_012287, intron 13 of 22) L1MEh|LINE|L1 -34099 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 339.75-7 chr16 69611814 69612142 + 1.5 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 46012 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 138-64 chr6 41591270 41591379 + 1.5 NA intron (NM_001012427, intron 13 of 16) intron (NM_001012427, intron 13 of 16) -7399 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 303.5-7 chr17 62897632 62897989 + 1.5 NA Intergenic Intergenic -46405 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 269.25-21 chr7 2162772 2163073 + 1.5 NA intron (NM_001013837, intron 10 of 18) Tigger13a|DNA|TcMar-Tigger 70023 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 193.5-62 chr5 104296650 104296818 + 1.5 NA Intergenic Intergenic -733945 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 320.5-18 chr8 68731536 68731749 + 1.5 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 372548 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 233.5-55 chr8 107087216 107087540 + 1.5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 249137 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 320.75-2 chr18 3817811 3818169 + 1.5 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 27368 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 214.5-42 chr4 55404703 55404883 + 1.5 NA intron (NR_073070, intron 2 of 6) intron (NR_073070, intron 2 of 6) 8836 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 274.5-34 chr7 44508668 44509052 + 1.5 NA Intergenic L1M5|LINE|L1 -18202 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 220-34 chr7 111318481 111318656 + 1.5 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 227441 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 289.75-4 chr11 105097824 105098106 + 1.5 NA intron (NM_001007232, intron 3 of 3) L3|LINE|CR1 3466 NM_001007232 440068 Hs.732627 NM_001007232 ENSG00000255221 CARD17 INCA caspase recruitment domain family member 17 protein-coding 234.75-12 chr14 29537615 29537855 + 1.5 NA Intergenic MIR|SINE|MIR 389361 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 177-49 chr6 132324707 132324855 + 1.5 NA intron (NM_015529, intron 6 of 11) intron (NM_015529, intron 6 of 11) 76694 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 186.25-43 chr5 128595853 128596092 + 1.5 NA Intergenic Intergenic -57727 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 152.25-20 chr14 56477976 56478134 + 1.5 NA Intergenic Intergenic -36276 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 172-15 chr15 91293045 91293259 + 1.5 NA 3' UTR (NM_001323031, exon 13 of 13) 3' UTR (NM_001323031, exon 13 of 13) -170187 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 304.25 chr1 36685497 36685936 + 1.5 NA Intergenic Charlie7|DNA|hAT-Charlie -202402 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 232.5-12 chr13 32618927 32619161 + 1.5 NA intron (NM_015032, intron 1 of 34) L1ME3A|LINE|L1 32592 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 132.5-112 chr8 76774798 76774911 + 1.5 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -91579 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 378.25-3 chr6 70304805 70305198 + 1.5 NA Intergenic Intergenic -1917 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 283-16 chr8 82560507 82560828 + 1.5 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -351437 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 230.5-60 chr9 8977568 8977769 + 1.5 NA intron (NM_002839, intron 11 of 45) (T)n|Simple_repeat|Simple_repeat 119650 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 171-7 chr10 7893190 7893434 + 1.5 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 74807 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 164.25-59 chr8 122812080 122812253 + 1.5 NA intron (NM_001362797, intron 1 of 4) L2a|LINE|L2 30511 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 147-15 chr11 75056731 75056884 + 1.5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 40083 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 229.75-7 chr11 22375855 22376101 + 1.5 NA intron (NM_020346, intron 9 of 11) intron (NM_020346, intron 9 of 11) 37597 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 229.5-32 chr3 67505236 67505604 + 1.5 NA intron (NM_001177599, intron 7 of 10) intron (NM_001177599, intron 7 of 10) 149194 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 305.25-10 chr20 58769807 58770134 + 1.5 NA Intergenic Intergenic -3455 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 250.5-3 chr1 245166295 245166560 + 1.5 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 11442 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 319.5-10 chr21 29538131 29538450 + 1.5 NA intron (NM_001330993, intron 15 of 16) intron (NM_001330993, intron 15 of 16) 42243 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 223.25-3 chr1 158573920 158574187 + 1.5 NA Intergenic L1M4b|LINE|L1 5846 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 240.5-31 chr20 53772783 53773353 + 1.5 NA Intergenic AluSg|SINE|Alu 102641 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 253.5-5 chr10 27702840 27703146 + 1.5 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -41622 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 135.75-11 chr1 238228298 238228415 + 1.5 NA Intergenic Intergenic 257661 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 180.5-52 chr20 54262645 54262818 + 1.5 NA Intergenic Intergenic 54644 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 268-10 chr16 72207776 72207991 + 1.5 NA Intergenic MLT2B4|LTR|ERVL -35433 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 126.25-36 chr18 13967743 13967972 + 1.5 NA Intergenic L1MB8|LINE|L1 -52150 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 355.75 chr5 55870386 55870654 + 1.5 NA intron (NM_001242636, intron 3 of 14) intron (NM_001242636, intron 3 of 14) 17198 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 233.25-10 chr15 59283188 59283377 + 1.5 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 76439 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 312.5-17 chr9 104515100 104515350 + 1.5 NA Intergenic L1PA16|LINE|L1 10962 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 170.5-32 chr16 49513700 49513902 + 1.5 NA intron (NM_001271620, intron 7 of 7) intron (NM_001271620, intron 7 of 7) 4784 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 179-42 chr3 105694838 105695079 + 1.5 NA intron (NR_135809, intron 13 of 18) intron (NR_135809, intron 13 of 18) 172633 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 248.75-4 chr12 96519966 96520222 + 1.5 NA intron (NM_001306084, intron 6 of 67) AluJb|SINE|Alu 30517 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 290-19 chr8 60347789 60348128 + 1.5 NA Intergenic Intergenic 65860 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 180-72 chr9 75277984 75278334 + 1.5 NA Intergenic L1MCa|LINE|L1 189645 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 194.5-43 chr22 28128696 28128845 + 1.5 NA intron (NM_001145418, intron 6 of 22) AluJb|SINE|Alu -208158 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 241.5-2 chr1 110577089 110577396 + 1.5 NA Intergenic L2a|LINE|L2 29116 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 183-35 chr2 193662181 193662322 + 1.5 NA Intergenic Intergenic -682018 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 235.25-18 chr4 36132654 36132945 + 1.5 NA intron (NR_146894, intron 20 of 32) intron (NR_146894, intron 20 of 32) 111140 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 322.5-17 chr4 47157194 47157440 + 1.5 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 125750 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 162.5-7 chr1 192344407 192344534 + 1.5 NA intron (NM_001039152, intron 2 of 4) MIRb|SINE|MIR 27478 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 190.5-37 chr2 161158673 161158898 + 1.5 NA intron (NM_004180, intron 1 of 7) L1MC|LINE|L1 -1643 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 120-29 chr14 58294433 58294602 + 1.5 NA intron (NR_029435, intron 1 of 3) HSMAR1|DNA|TcMar-Mariner 3620 NR_029434 379025 Hs.531089 NR_029434 ENSG00000257621 PSMA3-AS1 - PSMA3 antisense RNA 1 ncRNA 177-45 chr5 17700190 17700424 + 1.5 NA Intergenic Intergenic -44669 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 210-16 chr17 74494041 74494321 + 1.5 NA Intergenic Intergenic 27547 NM_001256841 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 221-16 chr16 67125811 67126048 + 1.5 NA intron (NM_001320543, intron 3 of 15) intron (NM_001320543, intron 3 of 15) 15988 NM_001320543 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 269.5-19 chr4 34370761 34371083 + 1.5 NA Intergenic Intergenic -101175 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 285.25-14 chr20 19067503 19067803 + 1.5 NA Intergenic Intergenic -144989 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 176-22 chr2 121784333 121784474 + 1.5 NA Intergenic L1MC5a|LINE|L1 28752 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 174-33 chr2 192767090 192767265 + 1.5 NA intron (NR_152587, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 17332 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 188.25-14 chr16 48276759 48276918 + 1.5 NA intron (NM_031490, intron 7 of 14) intron (NM_031490, intron 7 of 14) -29299 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 237-38 chr8 133570548 133570747 + 1.5 NA intron (NM_003033, intron 1 of 8) CpG 1240 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 208-10 chr16 7935853 7936088 + 1.5 NA Intergenic Intergenic 603125 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 295-6 chr20 37597222 37597579 + 1.5 NA Intergenic MER66B|LTR|ERV1 25719 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 178-45 chr5 152145831 152146013 + 1.5 NA intron (NR_109876, intron 1 of 2) L1ME4b|LINE|L1 187024 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 382.75-3 chr8 132905019 132905477 + 1.5 NA intron (NM_003235, intron 16 of 47) MIR|SINE|MIR 38290 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 258-18 chr2 234201611 234201828 + 1.5 NA Intergenic Intergenic 151017 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 187.25-4 chr1 92982220 92982469 + 1.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -20822 NM_001252269 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 146.25-56 chr4 145219666 145219842 + 1.5 NA Intergenic Intergenic -39165 NM_001366057 54726 Hs.270851 NM_017493 ENSG00000164164 OTUD4 DUBA6|HIN1|HSHIN1 OTU deubiquitinase 4 protein-coding 239.5-31 chr8 119853576 119853876 + 1.5 NA intron (NM_024094, intron 1 of 8) intron (NM_024094, intron 1 of 8) 2168 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 207.75-33 chr5 20561325 20561578 + 1.5 NA intron (NM_001349558, intron 1 of 15) L1MC1|LINE|L1 14262 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 207.5-33 chr20 52534770 52535032 + 1.5 NA Intergenic Intergenic -85937 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 205.5-26 chr2 108608687 108608948 + 1.5 NA intron (NM_001193482, intron 1 of 9) MIRb|SINE|MIR 1670 NM_001193482 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 162.75-63 chr6 63158836 63158965 + 1.5 NA Intergenic Intergenic 161077 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 146.25-20 chr12 91785255 91785368 + 1.5 NA Intergenic Intergenic 356402 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 261.75-4 chr11 67091287 67091491 + 1.5 NA Intergenic AluY|SINE|Alu 26959 NR_160735 107984341 NR_160735 LOC107984341 - uncharacterized LOC107984341 ncRNA 155.5-79 chr5 94318832 94319049 + 1.5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -207241 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 300.25-6 chr18 1459262 1459587 + 1.5 NA Intergenic Intergenic -99795 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 358.5 chr10 11120664 11121140 + 1.5 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -15414 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 126-86 chr8 64309995 64310160 + 1.5 NA intron (NR_125826, intron 1 of 4) L1MEc|LINE|L1 58481 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 219.5-38 chr5 23935097 23935275 + 1.5 NA Intergenic L1MC5|LINE|L1 -16162 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 188.25-28 chr21 30398344 30398510 + 1.5 NA Intergenic Intergenic 2396 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 133.5-50 chr2 79024330 79024428 + 1.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -1323 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 193-27 chr17 44677164 44677364 + 1.5 NA TTS (NM_001099225) TTS (NM_001099225) 12512 NM_144609 124808 Hs.579115 NM_144609 ENSG00000180329 CCDC43 - coiled-coil domain containing 43 protein-coding 156.5-60 chr5 38405409 38405601 + 1.5 NA intron (NM_182798, intron 1 of 16) L1ME3E|LINE|L1 1964 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 139.5-85 chr5 161476475 161476613 + 1.5 NA intron (NM_000813, intron 4 of 9) L1MB2|LINE|L1 71580 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 228.5-28 chr3 88022511 88022779 + 1.5 NA Intergenic L1MA4|LINE|L1 36351 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 190-13 chr14 97095127 97095283 + 1.5 NA Intergenic Intergenic -59652 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 168.25-34 chr21 15258005 15258178 + 1.5 NA Intergenic MIRb|SINE|MIR -193091 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 197.25-56 chr7 26311483 26311624 + 1.5 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) 18522 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 170.25-70 chr9 71384957 71385143 + 1.5 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 61921 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 155.25-50 chr4 38490658 38490805 + 1.5 NA intron (NR_110951, intron 2 of 7) intron (NR_110951, intron 2 of 7) -19036 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 327.25-3 chr2 68260366 68260752 + 1.5 NA Intergenic AluJb|SINE|Alu -8027 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 279-16 chr3 97248520 97248796 + 1.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -190949 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 266-6 chr14 39935202 39935474 + 1.5 NA Intergenic Intergenic -502838 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 213.25-19 chr2 38580458 38580851 + 1.5 NA intron (NM_138394, intron 6 of 12) intron (NM_138394, intron 6 of 12) 22274 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 113.5-76 chr3 64414291 64414372 + 1.5 NA Intergenic Intergenic -146158 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 127-93 chr8 80777042 80777169 + 1.5 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 97363 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 233.5-45 chr6 16602800 16602980 + 1.5 NA intron (NM_000332, intron 4 of 8) MIRb|SINE|MIR 157294 NR_152113 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 257.25-12 chr2 6632237 6632564 + 1.5 NA intron (NR_110498, intron 2 of 2) intron (NR_110498, intron 2 of 2) 1387 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 133.5-107 chr7 90889814 90889996 + 1.5 NA intron (NM_012395, intron 5 of 13) intron (NM_012395, intron 5 of 13) 180089 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 127.5 chr1 13744751 13744893 + 1.5 NA intron (NM_012231, intron 5 of 9) intron (NM_012231, intron 5 of 9) -4593 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 132.75-42 chr15 67662648 67662794 + 1.5 NA intron (NM_001206804, intron 12 of 21) intron (NM_001206804, intron 12 of 21) 113627 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 179.25-52 chr8 142962291 142962512 + 1.5 NA Intergenic MER41-int|LTR|ERV1 -33427 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 161.25-8 chr10 27565540 27565783 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 61357 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 275.25-3 chr12 48162851 48163369 + 1.5 NA Intergenic Intergenic -5595 NM_001319301 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 277-11 chr16 9667166 9667438 + 1.5 NA Intergenic Intergenic -211797 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 388.75-4 chr6 152628526 152629009 + 1.5 NA intron (NM_182961, intron 2 of 145) (AATA)n|Simple_repeat|Simple_repeat 8084 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 118.5-17 chr10 13832055 13832172 + 1.5 NA intron (NM_001318336, intron 2 of 23) intron (NM_001318336, intron 2 of 23) -124546 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 345.75 chr15 56062806 56063264 + 1.5 NA Intergenic L1MC1|LINE|L1 -69423 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 169.5-4 chr1 113222605 113222741 + 1.5 NA Intergenic Intergenic -16420 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 154-10 chr11 28947666 28947791 + 1.5 NA Intergenic Intergenic -470180 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 223.5-70 chr6 141835267 141835462 + 1.5 NA Intergenic L1ME3G|LINE|L1 253435 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 230.75-28 chrX 44438680 44438986 + 1.5 NA Intergenic MSTB|LTR|ERVL-MaLR -95161 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 193.5-61 chr5 81204268 81204439 + 1.5 NA intron (NM_006909, intron 19 of 26) intron (NM_006909, intron 19 of 26) -28967 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 135.5-101 chr8 28901471 28901660 + 1.5 NA intron (NM_024567, intron 2 of 10) intron (NM_024567, intron 2 of 10) 10251 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 139-63 chr7 53192761 53192914 + 1.5 NA Intergenic Intergenic 157204 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 171.75-15 chr12 89578806 89579022 + 1.5 NA Intergenic Charlie8|DNA|hAT-Charlie -52652 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 172.25-12 chr11 84722372 84722633 + 1.5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -1560 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 148-56 chr6 7111485 7111681 + 1.5 NA intron (NM_001003699, intron 1 of 12) intron (NM_001003699, intron 1 of 12) 3622 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 386.75-3 chr9 34768330 34768661 + 1.5 NA Intergenic MIRb|SINE|MIR -39007 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 222.5-3 chr1 110685766 110685961 + 1.5 NA Intergenic MIR3|SINE|MIR -10923 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 199.5-40 chr4 143061510 143061804 + 1.5 NA Intergenic L1ME3G|LINE|L1 123204 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 166.25-61 chr9 121619995 121620116 + 1.5 NA intron (NM_032552, intron 1 of 16) intron (NM_032552, intron 1 of 16) 52953 NM_032552 153090 Hs.522378 NM_032552 ENSG00000136848 DAB2IP AF9Q34|AIP-1|AIP1|DIP1/2 DAB2 interacting protein protein-coding 284.75-4 chr14 41342914 41343186 + 1.5 NA Intergenic Intergenic -263806 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 223.5-59 chr4 111671239 111671513 + 1.5 NA Intergenic Intergenic -474078 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 238.5 chr1 14378194 14378411 + 1.5 NA intron (NR_149058, intron 3 of 4) intron (NR_149058, intron 3 of 4) 41671 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 167.5-39 chr2 74388571 74388727 + 1.5 NA intron (NR_024463, intron 1 of 3) L2c|LINE|L2 3146 NR_158173 100189589 Hs.585961 NR_024463 ENSG00000237737 DCTN1-AS1 - DCTN1 antisense RNA 1 ncRNA 121.75-81 chr7 44747147 44747240 + 1.5 NA Intergenic L1MB3|LINE|L1 -1373 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 180-67 chr8 130810019 130810188 + 1.5 NA intron (NM_001115, intron 14 of 17) intron (NM_001115, intron 14 of 17) 230806 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 291-19 chr9 30066589 30066873 + 1.5 NA Intergenic L1ME5|LINE|L1 341723 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 203.25-38 chr4 65594516 65594727 + 1.5 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 74867 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 130.5-42 chr2 9072742 9072852 + 1.5 NA Intergenic MER31B|LTR|ERV1 -69113 NM_001321266 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 381-2 chr17 19400650 19401069 + 1.5 NA Intergenic AluSx1|SINE|Alu -10373 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 315-9 chr2 120553419 120553764 + 1.5 NA Intergenic Intergenic -87242 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 194.75-28 chr3 96284568 96284886 + 1.5 NA Intergenic Intergenic -75237 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 321.75-16 chr5 123643669 123644146 + 1.5 NA Intergenic L1MB7|LINE|L1 98490 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 504 chr4 82308641 82309188 + 1.5 NA Intergenic L1M1|LINE|L1 65077 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 209.25-13 chr15 101060054 101060360 + 1.5 NA intron (NM_024652, intron 29 of 33) intron (NM_024652, intron 29 of 33) 140850 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 216-10 chr13 33119707 33119969 + 1.5 NA intron (NM_178007, intron 7 of 13) intron (NM_178007, intron 7 of 13) 66253 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 289-11 chr3 110137471 110137736 + 1.5 NA Intergenic L1ME1|LINE|L1 534775 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 188.25-51 chr6 35775148 35775378 + 1.5 NA Intergenic Intergenic -1331 NR_104469 389383 Hs.259563 NM_207409 ENSG00000196748 CLPSL2 AAAL3045|C6orf126|UNQ3045|dJ510O8.5 colipase like 2 protein-coding 323-7 chr13 84880575 84880930 + 1.5 NA Intergenic MER4-int|LTR|ERV1 97098 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 163.5-64 chr4 121989397 121989628 + 1.5 NA Intergenic Intergenic -37452 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 333-9 chr2 203942657 203942907 + 1.5 NA intron (NM_012092, intron 1 of 4) MIR3|SINE|MIR 6034 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 233-26 chr5 108055649 108055839 + 1.5 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 326354 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 240-10 chr15 58412504 58412741 + 1.5 NA Intergenic Intergenic -19369 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 179.25-58 chrX 44874978 44875132 + 1.5 NA intron (NR_111960, intron 2 of 27) intron (NR_111960, intron 2 of 27) 1880 NR_111960 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 173-55 chr9 32409882 32410031 + 1.5 NA intron (NM_001278352, intron 5 of 21) intron (NM_001278352, intron 5 of 21) 25313 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 185.5-33 chr16 73221518 73221758 + 1.5 NA Intergenic Charlie24|DNA|hAT-Charlie -77191 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 214-14 chr12 72501705 72501859 + 1.5 NA intron (NM_013381, intron 6 of 18) L1M5|LINE|L1 -228273 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 195.25-28 chr20 46598266 46598711 + 1.5 NA intron (NM_001193339, intron 3 of 11) intron (NM_001193339, intron 3 of 11) -47834 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 189-46 chr7 22758051 22758206 + 1.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -30508 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 153.5-49 chr2 186465863 186466061 + 1.5 NA Intergenic Intergenic -20298 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 183-71 chr8 103927429 103927640 + 1.5 NA intron (NR_145711, intron 8 of 21) intron (NR_145711, intron 8 of 21) 108314 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 200.75-7 chr10 131317082 131317469 + 1.5 NA Intergenic Intergenic -5554 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 120-67 chr4 45375879 45376003 + 1.5 NA Intergenic L1MB4|LINE|L1 -649307 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 242.25 chr10 21245917 21246153 + 1.5 NA Intergenic Intergenic 71733 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 207.75-31 chr4 88802923 88803138 + 1.5 NA intron (NM_001265578, intron 1 of 16) intron (NM_001265578, intron 1 of 16) 20331 NM_001265580 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 132-22 chr15 24923602 24923701 + 1.5 NA intron (NM_001349456, intron 4 of 12) L1ME3A|LINE|L1 -31242 NM_005678 8926 Hs.564847 NM_005678 ENSG00000273173 SNURF - SNRPN upstream reading frame protein-coding 256-12 chr17 68656411 68656688 + 1.5 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 28395 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 200.25-25 chr2 62979905 62980092 + 1.5 NA intron (NM_001142615, intron 15 of 22) intron (NM_001142615, intron 15 of 22) 67713 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 218-26 chr2 166366951 166367252 + 1.5 NA intron (NM_001365536, intron 1 of 26) intron (NM_001365536, intron 1 of 26) 8843 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 170.75-17 chr12 4388081 4388265 + 1.5 NA Intergenic MIR3|SINE|MIR -8461 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 257.5-24 chr5 145243831 145244107 + 1.5 NA Intergenic Intergenic 591373 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 311-7 chr2 2486014 2486285 + 1.5 NA Intergenic L1ME3A|LINE|L1 -154874 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 166.5-90 chr5 179036798 179036941 + 1.5 NA Intergenic L1ME3A|LINE|L1 13065 NM_001353374 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 437.25 chr11 7692602 7692973 + 1.5 NA intron (NM_198185, intron 12 of 14) L3|LINE|CR1 13690 NM_198185 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 247-24 chr5 154339594 154339934 + 1.5 NA intron (NM_198321, intron 4 of 11) intron (NM_198321, intron 4 of 11) -7342 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 338.75-3 chr22 28149497 28149852 + 1.5 NA intron (NM_001145418, intron 6 of 22) Tigger3|DNA|TcMar-Tigger -229062 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 183.5-13 chr10 115015642 115015764 + 1.5 NA Intergenic Intergenic 21046 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 352.5-8 chr3 131753092 131753380 + 1.5 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 232695 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 138-14 chr12 26660877 26661039 + 1.5 NA intron (NM_002223, intron 15 of 56) (AAT)n|Simple_repeat|Simple_repeat 172236 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 235.5-55 chr8 31760235 31760438 + 1.5 NA intron (NM_013962, intron 1 of 4) L1PA3|LINE|L1 120584 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 163.5-52 chr3 9471060 9471233 + 1.5 NA intron (NM_001080517, intron 19 of 22) intron (NM_001080517, intron 19 of 22) 73446 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 213 chr1 21152574 21152728 + 1.5 NA intron (NM_001198803, intron 1 of 12) Charlie1a|DNA|hAT-Charlie 15388 NM_001198803 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 189.5-17 chr14 54927964 54928158 + 1.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -25235 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 253.25-21 chr3 181137162 181137562 + 1.5 NA intron (NR_075091, intron 2 of 7) LTR81B|LTR|Gypsy -37782 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 216.5-18 chr20 8270187 8270473 + 1.5 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 21626 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 251.75-17 chrX 53320805 53321026 + 1.5 NA exon (NM_001111125, exon 1 of 15) exon (NM_001111125, exon 1 of 15) 435 NM_001111125 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 235.5-63 chr9 119688195 119688391 + 1.5 NA Intergenic Intergenic -246767 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 241.5-12 chr14 82558534 82558740 + 1.5 NA Intergenic L1ME1|LINE|L1 -83995 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 206.75-12 chr14 78793998 78794155 + 1.5 NA intron (NR_073547, intron 8 of 20) HAL1b|LINE|L1 390357 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 142.5-77 chr5 45261597 45261761 + 1.5 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 434701 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 176.75-48 chr7 40540152 40540423 + 1.5 NA intron (NM_001193312, intron 11 of 12) MIRb|SINE|MIR 405311 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 317.25-6 chr12 65091565 65091957 + 1.5 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 29544 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 287-14 chr5 41594157 41594407 + 1.5 NA Intergenic Intergenic -83681 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 176-36 chr5 99678577 99678850 + 1.5 NA Intergenic Intergenic 144723 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 287.5-24 chr5 153253769 153254041 + 1.5 NA Intergenic L1M2|LINE|L1 -236619 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 248.75-16 chr7 13047546 13047807 + 1.5 NA Intergenic Intergenic 360043 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 146.5-47 chr2 27874919 27875047 + 1.5 NA intron (NM_001287580, intron 1 of 8) intron (NM_001287580, intron 1 of 8) -13726 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 148.5-56 chr20 40137855 40137986 + 1.5 NA Intergenic L1ME3B|LINE|L1 133459 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 153.75-82 chr8 25378263 25378444 + 1.5 NA intron (NM_024940, intron 38 of 51) intron (NM_024940, intron 38 of 51) -16841 NR_159962 105379331 NR_159962 LOC105379331 - uncharacterized LOC105379331 ncRNA 191.25 chr1 85176239 85176383 + 1.5 NA intron (NM_032184, intron 4 of 6) intron (NM_032184, intron 4 of 6) 24705 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 132.5-46 chr18 43648867 43649047 + 1.5 NA Intergenic Intergenic -371467 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 153.75-84 chr8 50370132 50370321 + 1.5 NA intron (NR_135797, intron 2 of 20) ERVL-int|LTR|ERVL 206095 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 204 chr1 48686350 48686554 + 1.5 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 90439 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 128-62 chr8 28235104 28235251 + 1.5 NA Intergenic Intergenic -82091 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 219-4 chr1 105346580 105346796 + 1.5 NA Intergenic L1PREC2|LINE|L1 272247 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 229.75-10 chr14 84968754 84968923 + 1.5 NA Intergenic MIRc|SINE|MIR -303094 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 288.25 chr1 4273354 4273678 + 1.5 NA Intergenic L1MEf|LINE|L1 -138535 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 305.25-9 chr20 50449338 50449573 + 1.5 NA Intergenic L2a|LINE|L2 -60866 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 169.5-55 chr4 31256772 31256976 + 1.5 NA Intergenic L2a|LINE|L2 85730 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 115.5-51 chr2 192538878 192539024 + 1.5 NA Intergenic Intergenic -210894 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 260-14 chr2 98467812 98468007 + 1.5 NA intron (NM_001351428, intron 1 of 24) Tigger16b|DNA|TcMar-Tigger 21899 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 277.75-15 chr6 162241720 162241915 + 1.5 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -485315 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 208.25-44 chr8 117334614 117335034 + 1.5 NA Intergenic MLT2B2|LTR|ERVL -185889 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 387.25-8 chr7 84383596 84384177 + 1.5 NA Intergenic Intergenic -148590 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 235.75-4 chr1 94990542 94990809 + 1.5 NA intron (NM_144988, intron 3 of 3) intron (NM_144988, intron 3 of 3) 62647 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 321.5-3 chr10 30589861 30590139 + 1.5 NA Intergenic Intergenic 39753 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 183.25-30 chr3 68736974 68737201 + 1.5 NA intron (NM_001005527, intron 5 of 5) intron (NM_001005527, intron 5 of 5) 195460 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 182.25-17 chr17 71436993 71437169 + 1.5 NA Intergenic Intergenic -234902 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 290.5-16 chr17 35157535 35157834 + 1.5 NA intron (NM_001033576, intron 7 of 19) L1ME4a|LINE|L1 9420 NM_001308281 146862 Hs.379636 NM_173167 ENSG00000141161 UNC45B CMYA4|CTRCT43|SMUNC45|UNC-45B|UNC45 unc-45 myosin chaperone B protein-coding 128-38 chr3 101063277 101063392 + 1.5 NA Intergenic Intergenic -69844 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 255-15 chr2 160742130 160742331 + 1.5 NA Intergenic L1PA17|LINE|L1 -248423 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 194-44 chr8 142243729 142243915 + 1.5 NA intron (NM_001366901, intron 12 of 13) L1MA8|LINE|L1 45466 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 198.5-43 chr5 130428611 130428921 + 1.5 NA Intergenic L1MC1|LINE|L1 524301 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 263.25-13 chr4 124441628 124441879 + 1.5 NA Intergenic L1MA4A|LINE|L1 116681 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 394.25-2 chr5 124069985 124070533 + 1.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 368261 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 145.5-6 chr1 188335543 188335648 + 1.5 NA Intergenic HERVL-int|LTR|ERVL 891967 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 192.75-20 chr20 59528384 59528573 + 1.5 NA Intergenic L1ME1|LINE|L1 -49031 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 259.25-16 chrX 69811632 69811882 + 1.5 NA intron (NM_001005613, intron 2 of 2) LTR52|LTR|ERVL 195644 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 152.5-21 chr11 85342104 85342253 + 1.5 NA intron (NM_001142699, intron 3 of 27) Tigger3b|DNA|TcMar-Tigger 285092 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170.25-14 chr12 130866385 130866728 + 1.5 NA Intergenic AluSz|SINE|Alu -5438 NM_001300797 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 181-17 chr11 110460955 110461133 + 1.5 NA intron (NM_004109, intron 3 of 3) Kanga1a|DNA|TcMar-Tc2 31096 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 156.25-66 chr6 85569756 85569964 + 1.5 NA intron (NM_001350538, intron 4 of 28) intron (NM_001350538, intron 4 of 28) 23998 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 160.5-67 chr7 3732401 3732531 + 1.5 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -397219 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 245-7 chr11 64993699 64993964 + 1.5 NA intron (NM_138456, intron 2 of 2) AluJo|SINE|Alu 3140 NM_138456 116071 Hs.124840 NM_138456 ENSG00000168062 BATF2 SARI basic leucine zipper ATF-like transcription factor 2 protein-coding 146-34 chr20 47786179 47786287 + 1.5 NA promoter-TSS (NM_018837) promoter-TSS (NM_018837) -169 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 373-3 chr22 27911157 27911644 + 1.5 NA intron (NM_001284278, intron 2 of 11) intron (NM_001284278, intron 2 of 11) 7814 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 189.75-6 chr10 120563972 120564278 + 1.5 NA intron (NM_001030059, intron 5 of 6) L1ME3D|LINE|L1 -33824 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 169.5-7 chr1 152330073 152330392 + 1.5 NA intron (NR_103778, intron 2 of 6) intron (NR_103778, intron 2 of 6) -5029 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 209.5-5 chr12 101111096 101111356 + 1.5 NA intron (NM_001286616, intron 22 of 26) L2b|LINE|L2 -27332 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 272.5-19 chr6 40314626 40314873 + 1.5 NA Intergenic Intergenic 41257 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 245.5-14 chr2 174991287 174991732 + 1.5 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 13744 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 234-18 chr14 81080663 81081002 + 1.5 NA intron (NM_001142626, intron 3 of 8) L1M5|LINE|L1 122002 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 179.5-14 chr10 20778385 20778662 + 1.5 NA Intergenic Intergenic 119079 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 179-50 chr5 148520661 148520919 + 1.5 NA intron (NM_001040172, intron 4 of 5) intron (NM_001040172, intron 4 of 5) 116271 NM_001040173 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 266.25-23 chr8 102584697 102584936 + 1.5 NA Intergenic Intergenic 33227 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 355.5-6 chr14 78182043 78182467 + 1.5 NA intron (NR_073547, intron 1 of 20) MIR|SINE|MIR 11882 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 349.75-8 chr6 135333674 135334007 + 1.5 NA intron (NM_017651, intron 23 of 27) MIR3|SINE|MIR 94680 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 161.25-56 chr4 36620279 36620580 + 1.5 NA intron (NR_149124, intron 1 of 4) L1MB1|LINE|L1 21471 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 277.25-17 chr22 25645036 25645256 + 1.5 NA intron (NM_005160, intron 3 of 20) L1MEg2|LINE|L1 80471 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 181.25-58 chrX 82980669 82980940 + 1.5 NA Intergenic Intergenic -527486 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 233-4 chr1 84942696 84942977 + 1.5 NA intron (NM_153259, intron 7 of 13) MSTC|LTR|ERVL-MaLR -49630 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 326.5-7 chr2 102376030 102376274 + 1.5 NA intron (NM_003855, intron 5 of 10) intron (NM_003855, intron 5 of 10) 19869 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 267.25-10 chr4 35851443 35851829 + 1.5 NA Intergenic Intergenic 392303 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 147-54 chr3 51195156 51195304 + 1.5 NA intron (NM_004947, intron 12 of 52) L1M2|LINE|L1 -190061 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 340.25-4 chr4 59971596 59971914 + 1.5 NA Intergenic Intergenic -950864 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 150.25-38 chr2 89828576 89828715 + 1.5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -190738 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 167-53 chr5 55749923 55750235 + 1.5 NA intron (NM_024415, intron 3 of 21) intron (NM_024415, intron 3 of 21) 12018 NM_024415 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 257 chr1 186280747 186281020 + 1.5 NA Intergenic L1MC4a|LINE|L1 -15390 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 377.5-5 chr3 69800945 69801224 + 1.5 NA intron (NM_001354607, intron 2 of 10) intron (NM_001354607, intron 2 of 10) 37273 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 135-25 chr14 68058453 68058585 + 1.5 NA intron (NM_133509, intron 7 of 10) L1MC4a|LINE|L1 234927 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 239.25-20 chr3 84095350 84095666 + 1.5 NA Intergenic L1MD2|LINE|L1 774067 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 159.5-65 chr4 72279594 72279779 + 1.5 NA Intergenic AluSx1|SINE|Alu 240554 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 114.5-107 chr8 99344567 99344714 + 1.5 NA intron (NM_017890, intron 19 of 61) L1M5|LINE|L1 192090 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 345-10 chr2 241427244 241427555 + 1.5 NA intron (NM_014808, intron 8 of 26) AluJo|SINE|Alu -50506 NR_036083 100422942 NR_036083 ENSG00000263752 MIR3133 - microRNA 3133 ncRNA 139-25 chr17 34324691 34324791 + 1.5 NA Intergenic L1PBa|LINE|L1 5306 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 246-30 chr7 36790806 36790999 + 1.5 NA Intergenic MamRTE1|LINE|RTE-BovB -66353 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 160.25-2 chr1 244748327 244748477 + 1.5 NA Intergenic LTR56|LTR|ERV1 -86904 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 353-3 chr2 125305271 125305529 + 1.5 NA Intergenic L1MB3|LINE|L1 812585 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 290.5-22 chr6 80731750 80732027 + 1.5 NA Intergenic Intergenic 625217 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 224-33 chr9 74693063 74693304 + 1.5 NA TTS (NM_001365023) TTS (NM_001365023) 77649 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 155.25-34 chr2 59201903 59202082 + 1.5 NA Intergenic Intergenic -15716 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 251.5-11 chr18 2004960 2005141 + 1.5 NA Intergenic L1ME3|LINE|L1 566455 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 267-8 chr14 44682456 44682805 + 1.5 NA Intergenic Intergenic 116496 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 166.5-95 chr8 65785641 65785816 + 1.5 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 3329 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 290.25-9 chr17 61549054 61549322 + 1.5 NA Intergenic L1MEi|LINE|L1 42031 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 158.25-45 chr5 3445230 3445390 + 1.5 NA intron (NR_033898, intron 2 of 4) L1M5|LINE|L1 -7506 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 226.25-24 chr3 153382736 153382960 + 1.5 NA TTS (NR_146713) TTS (NR_146713) -101647 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 323.5-5 chr12 71697652 71697999 + 1.5 NA intron (NM_018279, intron 4 of 5) intron (NM_018279, intron 4 of 5) 11743 NM_018279 55266 Hs.644802 NM_018279 ENSG00000139291 TMEM19 - transmembrane protein 19 protein-coding 199.25-16 chr15 68057080 68057230 + 1.5 NA intron (NM_001320687, intron 2 of 14) intron (NM_001320687, intron 2 of 14) 2579 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 179.5-21 chr12 414948 415172 + 1.5 NA intron (NM_001130148, intron 2 of 10) MER21C|LTR|ERVL 13416 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 286.75-11 chr7 121500351 121500571 + 1.5 NA Intergenic Intergenic -104093 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 154.5-22 chr12 10488522 10488658 + 1.5 NA Intergenic L1MA8|LINE|L1 -17303 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 215.5-17 chr14 82228498 82228808 + 1.5 NA Intergenic Intergenic -413979 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 260.5-32 chr8 125346553 125346819 + 1.5 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -83672 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 234-14 chr13 29832122 29832334 + 1.5 NA intron (NM_007106, intron 1 of 4) L2b|LINE|L2 18389 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 194.5-24 chr18 5642380 5642612 + 1.5 NA Intergenic (TATGTA)n|Simple_repeat|Simple_repeat -13505 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 378.5-2 chr13 70869393 70869840 + 1.5 NA Intergenic Intergenic -145525 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 159-34 chr2 66188575 66188737 + 1.5 NA Intergenic Intergenic 169672 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 129.5-76 chr5 82333210 82333324 + 1.5 NA Intergenic Intergenic 53805 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 137.25-27 chr14 55669108 55669236 + 1.5 NA intron (NR_073129, intron 35 of 45) intron (NR_073129, intron 35 of 45) 88965 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 152-51 chr5 4273638 4273803 + 1.5 NA Intergenic Intergenic -499761 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 285.25-7 chr19 32737666 32737951 + 1.5 NA intron (NM_001366102, intron 2 of 32) L2a|LINE|L2 18041 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 215.25-8 chr14 30229245 30229458 + 1.5 NA Intergenic Intergenic -301504 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 210-15 chr17 62891100 62891295 + 1.5 NA Intergenic Intergenic -53018 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 182.5-52 chr4 116932284 116932411 + 1.5 NA Intergenic Intergenic 153229 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 183.75-27 chr18 2104999 2105188 + 1.5 NA Intergenic Intergenic 466412 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 132-3 chr1 204786160 204786264 + 1.5 NA Intergenic L1M4|LINE|L1 -42440 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 521.5 chr8 105740144 105740754 + 1.5 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 320054 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 215-38 chr6 74759001 74759303 + 1.5 NA Intergenic MSTA|LTR|ERVL-MaLR 369630 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 240.5-37 chr4 142053523 142053892 + 1.5 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 417124 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 164-11 chr11 114776692 114776866 + 1.5 NA Intergenic Intergenic 98252 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 310-11 chr2 135039564 135039823 + 1.5 NA Intergenic Intergenic -12599 NM_012233 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 200-3 chr1 176402323 176402563 + 1.5 NA Intergenic L1MA1|LINE|L1 -60732 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 270-26 chr7 62171980 62172203 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 1131965 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 357.75-3 chr10 25301109 25301533 + 1.5 NA intron (NM_020752, intron 2 of 10) MIR3|SINE|MIR -125045 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 259.5-27 chr8 65827398 65827607 + 1.5 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 14562 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 235-16 chr15 76734268 76734717 + 1.5 NA intron (NR_148227, intron 15 of 32) intron (NR_148227, intron 15 of 32) 127452 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 247-11 chr17 27378241 27378448 + 1.5 NA Intergenic AluJo|SINE|Alu -39661 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 369-14 chr8 86325516 86325900 + 1.5 NA Intergenic L2c|LINE|L2 -16839 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 206-30 chr5 137455927 137456188 + 1.5 NA intron (NM_004598, intron 2 of 10) GA-rich|Low_complexity|Low_complexity 43269 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 149.5-96 chr6 104044085 104044271 + 1.5 NA Intergenic L2b|LINE|L2 815368 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 128-40 chr3 169455937 169456088 + 1.5 NA intron (NR_134932, intron 1 of 4) MER102a|DNA|hAT-Charlie 8145 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 115.5-24 chr12 40432448 40432654 + 1.5 NA intron (NM_173600, intron 23 of 173) intron (NM_173600, intron 23 of 173) 39157 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 294.5-13 chr3 60191321 60191744 + 1.5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -110623 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 264.75-20 chr6 50200922 50201490 + 1.5 NA Intergenic Intergenic -151277 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 185.5-69 chr7 13336869 13337029 + 1.5 NA Intergenic Intergenic 649316 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 147.75-38 chr2 167738378 167738570 + 1.5 NA Intergenic Intergenic -80198 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 133-61 chr7 90742455 90742641 + 1.5 NA intron (NM_001287137, intron 2 of 12) L1M5|LINE|L1 32732 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 228-34 chr5 158943833 158944049 + 1.5 NA intron (NM_182708, intron 5 of 14) MER117|DNA|hAT-Charlie 154015 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 341-4 chr16 85787405 85787665 + 1.5 NA intron (NM_006067, intron 2 of 4) intron (NM_006067, intron 2 of 4) -4880 NR_135193 101928557 Hs.662217 NR_135193 ENSG00000270159 LOC101928557 - uncharacterized LOC101928557 ncRNA 179-36 chr2 138619380 138619621 + 1.5 NA Intergenic MIRc|SINE|MIR 117730 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 208.5-72 chr8 75693670 75693931 + 1.5 NA Intergenic Intergenic 153832 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 249-6 chr11 94950335 94950679 + 1.5 NA Intergenic Tigger2|DNA|TcMar-Tigger 23049 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 279-23 chr8 108899320 108899525 + 1.5 NA Intergenic L1M4|LINE|L1 -111828 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 186.75-48 chr5 61385392 61385581 + 1.5 NA intron (NM_020928, intron 1 of 13) MIRc|SINE|MIR 53228 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 251.5-15 chr2 19247108 19247438 + 1.5 NA Intergenic Intergenic -101156 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 258-11 chr12 6641325 6641543 + 1.5 NA intron (NM_032489, intron 6 of 9) intron (NM_032489, intron 6 of 9) -5475 NM_020400 57121 Hs.155538 NM_020400 ENSG00000184574 LPAR5 GPR92|GPR93|KPG_010|LPA5 lysophosphatidic acid receptor 5 protein-coding 138.5-111 chr9 96829470 96829621 + 1.5 NA intron (NM_001346995, intron 2 of 3) L1MEc|LINE|L1 24969 NM_001001662 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 261.25-15 chr9 74033743 74034059 + 1.5 NA Intergenic Intergenic -337630 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 163-21 chr2 23934457 23934604 + 1.5 NA Intergenic Intergenic -5933 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 311.75-8 chr4 33469987 33470324 + 1.5 NA Intergenic Intergenic 569738 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 113.75-13 chr1 184634890 184635045 + 1.5 NA Intergenic MIRb|SINE|MIR 119891 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 269.25-10 chr19 33270575 33270777 + 1.5 NA Intergenic Intergenic 31858 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT enhancer binding protein alpha protein-coding 214.5-38 chr3 179768280 179768456 + 1.5 NA intron (NM_003940, intron 19 of 20) intron (NM_003940, intron 19 of 20) 115328 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 168.5-8 chr10 52369348 52369533 + 1.5 NA Intergenic Intergenic 55159 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 173.25-11 chr11 86004579 86004710 + 1.5 NA intron (NM_001008660, intron 8 of 19) intron (NM_001008660, intron 8 of 19) 64440 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 239-23 chr20 44559233 44559462 + 1.5 NA intron (NM_007066, intron 1 of 3) L1ME4b|LINE|L1 -23232 NM_001281445 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 247-6 chr11 99437046 99437322 + 1.5 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -118961 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 296-4 chr12 14331932 14332147 + 1.5 NA Intergenic HERVL-int|LTR|ERVL -33593 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 244.25-9 chr15 65736590 65736896 + 1.5 NA intron (NM_005848, intron 7 of 31) Charlie1a|DNA|hAT-Charlie -17411 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 143.25-68 chr7 52259195 52259361 + 1.5 NA Intergenic Intergenic -776355 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 237-35 chr6 106496108 106496393 + 1.5 NA intron (NM_001371242, intron 2 of 21) intron (NM_001371242, intron 2 of 21) -15605 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 194-28 chr4 82055358 82055580 + 1.5 NA Intergenic Intergenic 318522 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 195-9 chr10 101874260 101874415 + 1.5 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -30417 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 205.5-13 chr14 64025986 64026163 + 1.5 NA intron (NM_015180, intron 41 of 114) intron (NM_015180, intron 41 of 114) 69051 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 270 chr1 168775278 168775516 + 1.5 NA Intergenic Intergenic -11544 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 216.5-21 chr3 117969524 117969735 + 1.5 NA Intergenic AluSq2|SINE|Alu -278704 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 227-21 chr3 80167617 80167862 + 1.5 NA Intergenic Intergenic -399741 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 278.5 chr1 163018405 163018777 + 1.5 NA Intergenic FLAM_C|SINE|Alu -50015 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 200-41 chr6 8657748 8657955 + 1.5 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) 5642 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 250.75-27 chr8 123349531 123349733 + 1.5 NA intron (NM_014109, intron 13 of 27) intron (NM_014109, intron 13 of 27) -1502 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 200.5-5 chr1 218592553 218592827 + 1.5 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 82595 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 120-89 chr8 128047808 128047978 + 1.5 NA intron (NR_003367, intron 5 of 8) L1MA8|LINE|L1 -1259 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 260-29 chr6 53348855 53349101 + 1.5 NA promoter-TSS (NM_021814) promoter-TSS (NM_021814) -28 NM_001301856 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 131.75-49 chr20 60573953 60574047 + 1.5 NA Intergenic Intergenic 9438 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 113.5-11 chr10 9632019 9632127 + 1.5 NA Intergenic L1ME3|LINE|L1 -336480 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 246-19 chr4 105606436 105606676 + 1.5 NA intron (NM_001242729, intron 2 of 13) intron (NM_001242729, intron 2 of 13) 44965 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 234-31 chr3 194445527 194445724 + 1.5 NA intron (NM_001367549, intron 14 of 33) intron (NM_001367549, intron 14 of 33) 22614 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 127.5-117 chr7 33172415 33172581 + 1.5 NA intron (NM_198428, intron 4 of 22) MER57A-int|LTR|ERV1 42934 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 174.75-30 chr2 151627133 151627355 + 1.5 NA intron (NM_001271208, intron 69 of 182) intron (NM_001271208, intron 69 of 182) 107232 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 267.5-21 chr4 47764737 47765072 + 1.5 NA intron (NM_001278585, intron 2 of 19) intron (NM_001278585, intron 2 of 19) -66441 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 403.5-2 chr12 97551574 97552107 + 1.5 NA intron (NR_152618, intron 8 of 10) intron (NR_152618, intron 8 of 10) -11972 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 165-28 chr2 21560173 21560313 + 1.5 NA Intergenic Intergenic 150409 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 149.5-68 chr3 71848181 71848355 + 1.5 NA Intergenic Intergenic -63120 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 201-40 chr5 26325510 26325796 + 1.5 NA Intergenic MER52A|LTR|ERV1 712933 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 264.25-6 chr21 15769025 15769349 + 1.5 NA intron (NM_001352561, intron 3 of 23) intron (NM_001352561, intron 3 of 23) 39205 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 141.75-35 chr18 4727357 4727475 + 1.5 NA Intergenic L1MC1|LINE|L1 -272109 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 168.5-25 chr14 65382807 65382995 + 1.5 NA Intergenic Intergenic -27691 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 262-6 chr10 60992270 60992589 + 1.5 NA intron (NM_001350902, intron 1 of 11) intron (NM_001350902, intron 1 of 11) 8568 NM_001350906 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 258-27 chr5 98645054 98645365 + 1.5 NA Intergenic L1MC4|LINE|L1 -123423 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 144-68 chr7 843028 843155 + 1.5 NA TTS (NM_001367637) TTS (NM_001367637) 1717 NM_001367708 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 243-19 chr4 58680929 58681153 + 1.5 NA Intergenic Intergenic -144713 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 209.75 chr1 52572151 52572341 + 1.5 NA Intergenic MER51A|LTR|ERV1 -19154 NM_001009881 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 189-27 chr2 145618539 145618757 + 1.5 NA Intergenic Intergenic 950681 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 192-24 chr17_KI270729v1_random 24609 24810 + 1.5 NA NA (GAATG)n|Satellite|Satellite NA NA 124.5-87 chr5 168279234 168279387 + 1.5 NA Intergenic LTR84b|LTR|ERVL -12335 NM_015238 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 258.5-7 chr17 62953135 62953362 + 1.5 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 9033 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 239-27 chr5 91927340 91927583 + 1.5 NA Intergenic Intergenic -544144 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 361.5-5 chr2 217340626 217341057 + 1.5 NA intron (NR_133642, intron 5 of 5) intron (NR_133642, intron 5 of 5) 58108 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 169.25-2 chr1 186898162 186898347 + 1.5 NA intron (NM_001311193, intron 5 of 15) intron (NM_001311193, intron 5 of 15) 69305 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 235-13 chr14 55221542 55221791 + 1.5 NA Intergenic Intergenic -30081 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 336.5-9 chr5 31435135 31435596 + 1.5 NA intron (NM_013235, intron 24 of 34) intron (NM_013235, intron 24 of 34) 96728 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 134-75 chr8 88959498 88959695 + 1.5 NA Intergenic THE1D|LTR|ERVL-MaLR -632113 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 302-17 chr8 144085528 144085785 + 1.5 NA exon (NM_003801, exon 11 of 12) exon (NM_003801, exon 11 of 12) 3022 NM_003801 8733 Hs.627962 NM_003801 ENSG00000197858 GPAA1 GAA1|GPIBD15|hGAA1 glycosylphosphatidylinositol anchor attachment 1 protein-coding 233.25-16 chr17 64614776 64614949 + 1.5 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 47445 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 173.5-6 chr1 241163298 241163440 + 1.5 NA intron (NM_001282778, intron 2 of 16) LTR49|LTR|ERV1 31097 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 184.25-33 chr3 193767094 193767355 + 1.5 NA Intergenic MIRc|SINE|MIR 76785 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 252.75-7 chr14 46861177 46861684 + 1.5 NA intron (NM_001113498, intron 14 of 16) intron (NM_001113498, intron 14 of 16) -209649 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 219-24 chr4 66556044 66556208 + 1.5 NA Intergenic MER4A|LTR|ERV1 279302 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 180.75-41 chr20 59266410 59266592 + 1.5 NA Intergenic Intergenic -34110 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 208.5-15 chr12 116071027 116071177 + 1.5 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 77552 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 433 chr18 21301643 21302185 + 1.5 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 59672 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 285.75-7 chr14 44467157 44467435 + 1.5 NA Intergenic Intergenic 39987 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 215.25-22 chr3 154793796 154794064 + 1.5 NA Intergenic Intergenic -230194 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 121.5-25 chr12 64729555 64729709 + 1.5 NA intron (NM_002076, intron 9 of 13) intron (NM_002076, intron 9 of 13) 29774 NM_002076 2799 Hs.334534 NM_002076 ENSG00000135677 GNS G6S glucosamine (N-acetyl)-6-sulfatase protein-coding 221.75-22 chr5 39390548 39390822 + 1.5 NA intron (NM_001343, intron 4 of 14) intron (NM_001343, intron 4 of 14) -26190 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 414.5-2 chr13 105026674 105026991 + 1.5 NA Intergenic L1M4c|LINE|L1 -439035 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 258-21 chr3 95785164 95785361 + 1.5 NA Intergenic Intergenic -102069 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 196.25-44 chr3 105890404 105890734 + 1.5 NA Intergenic MER3|DNA|hAT-Charlie -21168 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 132-25 chr15 70244153 70244274 + 1.5 NA Intergenic MIR|SINE|MIR -146296 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 261-5 chr11 8596105 8596292 + 1.5 NA Intergenic Intergenic -1970 NM_001352392 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 207-21 chr18 4378709 4378963 + 1.5 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 76430 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 227-22 chr4 116119799 116119986 + 1.5 NA Intergenic Intergenic -179833 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 166.5-67 chr3 177760514 177760674 + 1.5 NA Intergenic Intergenic -56271 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 229.25-6 chr13 93188527 93188804 + 1.5 NA Intergenic Intergenic -38142 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 222-2 chr1 22605336 22605521 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 27938 NR_106742 102466615 NR_106742 ENSG00000276835 MIR6127 hsa-mir-6127 microRNA 6127 ncRNA 214-20 chr17 31059530 31059805 + 1.5 NA promoter-TSS (NR_146737) promoter-TSS (NR_146737) -558 NR_146737 646030 NR_146737 LOC646030 - leucine rich repeat containing 37B pseudogene pseudo 127.5-113 chr6 155917969 155918107 + 1.5 NA Intergenic L1ME4a|LINE|L1 -28759 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 353.75-4 chr21 26930707 26930991 + 1.5 NA intron (NM_007038, intron 6 of 7) intron (NM_007038, intron 6 of 7) -23112 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 216-43 chr8 128950047 128950309 + 1.5 NA Intergenic MIR|SINE|MIR 15823 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 243-23 chr4 181206218 181206411 + 1.5 NA Intergenic Intergenic -47165 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 154.25-15 chr11 32421399 32421501 + 1.5 NA intron (NR_160306, intron 3 of 9) intron (NR_160306, intron 3 of 9) 9363 NM_001198552 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 192-53 chr9 10359110 10359272 + 1.5 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 253811 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 299.5-10 chr5 110272488 110272834 + 1.5 NA Intergenic MSTD|LTR|ERVL-MaLR 241254 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 130-10 chr11 40631704 40631886 + 1.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -338665 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 218.5-46 chr7 3619316 3619492 + 1.5 NA intron (NM_152744, intron 2 of 44) intron (NM_152744, intron 2 of 44) 318152 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 302.5-4 chr15 25678931 25679199 + 1.5 NA 3' UTR (NM_024490, exon 21 of 21) 3' UTR (NM_024490, exon 21 of 21) 169760 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 231-8 chr11 33587159 33587322 + 1.5 NA intron (NM_012194, intron 11 of 20) intron (NM_012194, intron 11 of 20) 113500 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 125.5-131 chr9 73758160 73758333 + 1.5 NA Intergenic Intergenic 606381 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 189.5-35 chr22 27051429 27051577 + 1.5 NA intron (NM_001318329, intron 1 of 1) MIR|SINE|MIR 9015 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 183-62 chr7 31862756 31863160 + 1.5 NA intron (NM_001191059, intron 8 of 18) L1ME3G|LINE|L1 175743 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 218-8 chr11 110716987 110717244 + 1.5 NA Intergenic L2|LINE|L2 -3926 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 149-24 chr2 50446777 50446951 + 1.5 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -99108 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 302-12 chr2 47289730 47289959 + 1.5 NA intron (NR_110207, intron 1 of 2) AluSx1|SINE|Alu -45471 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 275.5-9 chr14 55445977 55446328 + 1.5 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -5607 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 343.75-10 chr7 117098661 117099029 + 1.5 NA intron (NM_001369606, intron 2 of 16) intron (NM_001369606, intron 2 of 16) -8064 NR_109980 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 155-9 chr10 7981685 7981856 + 1.5 NA intron (NM_031923, intron 4 of 6) intron (NM_031923, intron 4 of 6) 70721 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 198-31 chr3 188095520 188095714 + 1.5 NA Intergenic MIR3|SINE|MIR -58281 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 221-42 chr6 152806757 152806932 + 1.5 NA Intergenic Intergenic 56047 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 391-2 chr2 13766104 13766587 + 1.5 NA Intergenic Intergenic 634613 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 225-41 chr8 71926446 71926659 + 1.5 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -82056 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 203.25-16 chr12 68320084 68320282 + 1.5 NA intron (NM_001368282, intron 6 of 13) intron (NM_001368282, intron 6 of 13) 12179 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 177.25-17 chr2 10576891 10577151 + 1.5 NA intron (NR_048552, intron 19 of 19) intron (NR_048552, intron 19 of 19) 112954 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 191-39 chr4 59673818 59674010 + 1.5 NA Intergenic Intergenic 660341 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 164.25-9 chr10 33828824 33828948 + 1.5 NA Intergenic Intergenic -56206 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 296.5-3 chr1 222631537 222631951 + 1.5 NA intron (NM_198551, intron 4 of 27) intron (NM_198551, intron 4 of 27) -12559 NM_001324065 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 210.5-57 chr8 88940976 88941188 + 1.5 NA Intergenic Intergenic -613599 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 156-72 chr9 103491963 103492140 + 1.5 NA Intergenic Intergenic -167018 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 201.5-9 chr11 50454020 50454369 + 1.5 NA Intergenic ALR/Alpha|Satellite|centr 45047 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 178.5-37 chr2 238711861 238711995 + 1.5 NA Intergenic Intergenic 135979 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 292.75-2 chr11 90610713 90610958 + 1.5 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -54978 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 346-10 chr4 36536078 36536384 + 1.5 NA intron (NR_149124, intron 3 of 4) L1MC|LINE|L1 105669 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 185.75-57 chr8 92169491 92169743 + 1.5 NA Intergenic Intergenic -66232 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 135.25-42 chr2 26604743 26605058 + 1.5 NA intron (NM_001029881, intron 3 of 6) L1MEc|LINE|L1 36466 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 169.75-36 chr2 203333597 203333770 + 1.5 NA intron (NM_001282932, intron 1 of 9) intron (NM_001282932, intron 1 of 9) 5289 NM_001282926 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 258-24 chr4 67146032 67146362 + 1.5 NA Intergenic Intergenic 275803 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 227.5-47 chr6 115944313 115944512 + 1.5 NA exon (NM_002031, exon 6 of 8) exon (NM_002031, exon 6 of 8) -94319 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 242-5 chr10 56992524 56992940 + 1.5 NA Intergenic MIRb|SINE|MIR 311827 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 246-25 chr6 109930486 109930671 + 1.5 NA Intergenic L1MC5a|LINE|L1 -47678 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 177-54 chr7 101373464 101373684 + 1.5 NA intron (NM_133457, intron 1 of 12) intron (NM_133457, intron 1 of 12) 10699 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 244-28 chr8 81112884 81113261 + 1.5 NA Intergenic Intergenic -1004 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 215-34 chr4 94176620 94176862 + 1.5 NA intron (NR_125922, intron 1 of 8) AluSz|SINE|Alu 30815 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 119-13 chr12 38449566 38449699 + 1.5 NA Intergenic Intergenic 132858 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 135.5-48 chr2 20812378 20812548 + 1.5 NA intron (NM_021925, intron 1 of 6) intron (NM_021925, intron 1 of 6) 10638 NM_001282724 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 149.25-4 chr1 183947804 183947943 + 1.5 NA intron (NM_015101, intron 8 of 11) L1M4|LINE|L1 89855 NM_001303420 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 215.5-7 chr10 60307860 60308126 + 1.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 81882 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 298.5-15 chr22 24720868 24721259 + 1.5 NA intron (NM_001008496, intron 19 of 20) L1MEd|LINE|L1 -43438 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 232.25-20 chr3 36579489 36579746 + 1.5 NA Intergenic Intergenic 160244 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 238.25-5 chr12 40867332 40867633 + 1.5 NA intron (NM_001256064, intron 1 of 15) L1MA8|LINE|L1 39544 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 253-26 chrX 143057257 143057444 + 1.5 NA Intergenic MIR|SINE|MIR 31422 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 228.5-18 chr2 133106526 133106769 + 1.5 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -159548 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 212.25-35 chr5 157819132 157819334 + 1.5 NA intron (NM_001195556, intron 1 of 11) intron (NM_001195556, intron 1 of 11) 39912 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 289.75-14 chr20 60940296 60940781 + 1.5 NA Intergenic (TATAGA)n|Simple_repeat|Simple_repeat -138526 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 124-43 chr4 79895818 79895947 + 1.5 NA Intergenic L1MD1|LINE|L1 68411 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 344-3 chr14 24962978 24963303 + 1.5 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 85860 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 166.25-46 chr4 80075849 80076122 + 1.5 NA Intergenic Intergenic -2513 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 379-9 chr4 115570096 115570538 + 1.5 NA Intergenic Intergenic -456697 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 154.5-71 chr8 41847237 41847408 + 1.5 NA intron (NM_001142446, intron 1 of 42) MLT1J1|LTR|ERVL-MaLR 49419 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 185.5-62 chr5 107142329 107142600 + 1.5 NA Intergenic L1MEj|LINE|L1 -131450 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 217-10 chr17 77506345 77506567 + 1.5 NA Intergenic Intergenic -20545 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 305.5-11 chr2 179294897 179295241 + 1.5 NA Intergenic MER58A|DNA|hAT-Charlie -30237 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 214-10 chr11 31683397 31683695 + 1.5 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 117115 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 199 chr1 44115618 44115791 + 1.5 NA Intergenic MER97b|DNA|hAT-Tip100 -3117 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 191-13 chr14 77162438 77162596 + 1.5 NA Intergenic Intergenic -19281 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 195-41 chr4 71204005 71204267 + 1.5 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 16850 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 171-47 chr5 163439822 163440063 + 1.5 NA intron (NM_199246, intron 3 of 7) intron (NM_199246, intron 3 of 7) 2347 NM_004060 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 222.75-31 chr4 111034066 111034316 + 1.5 NA Intergenic Intergenic -173544 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 267-15 chr20 10751470 10751692 + 1.5 NA Intergenic MIRb|SINE|MIR -1509 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 255.75 chr1 22306715 22307161 + 1.5 NA Intergenic L1ME1|LINE|L1 40699 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 154.75-50 chr5 13991840 13992148 + 1.5 NA Intergenic Intergenic -47514 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 166-5 chr10 25832408 25832621 + 1.5 NA Intergenic Intergenic 101196 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 295-5 chr2 55808384 55808604 + 1.5 NA Intergenic Intergenic -114650 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 202.5-21 chr2 236491943 236492180 + 1.5 NA intron (NR_073043, intron 3 of 19) MSTD|LTR|ERVL-MaLR 11636 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 269.75-16 chr8 77756330 77756608 + 1.5 NA Intergenic L1M4|LINE|L1 305772 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 175.75-13 chr17 60291292 60291464 + 1.5 NA intron (NM_032582, intron 4 of 33) intron (NM_032582, intron 4 of 33) -59733 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 144.5-53 chr2 18913109 18913214 + 1.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 113810 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 405-3 chr20 36895663 36896080 + 1.5 NA intron (NM_001363733, intron 15 of 15) MER2|DNA|TcMar-Tigger 19733 NM_080628 140711 Hs.472630 NM_080628 ENSG00000101342 TLDC2 C20orf118 TBC/LysM-associated domain containing 2 protein-coding 137-64 chr8 5011636 5011773 + 1.5 NA Intergenic Intergenic -16790 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 178.5-41 chr21 25938185 25938348 + 1.5 NA intron (NM_001136131, intron 11 of 15) intron (NM_001136131, intron 11 of 15) 202124 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 288.75-16 chr6 111504168 111504533 + 1.5 NA TTS (NR_034111) TTS (NR_034111) -20635 NM_002912 5980 Hs.232021 NM_002912 ENSG00000009413 REV3L POLZ|REV3 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 218.25-42 chr6 156789754 156789975 + 1.5 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -10133 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 178.5-2 chr1 81357885 81358058 + 1.5 NA intron (NM_001366003, intron 2 of 27) MIRc|SINE|MIR 51576 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 232-20 chr5 36494534 36494794 + 1.5 NA Intergenic Intergenic -111691 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 168-47 chr21 29937743 29937909 + 1.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 2170 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 284.25-10 chr2 9876074 9876310 + 1.5 NA intron (NM_005680, intron 7 of 14) MIR|SINE|MIR 32718 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 276.75-8 chr14 55590315 55590614 + 1.5 NA intron (NM_004986, intron 1 of 41) L1ME3E|LINE|L1 10257 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 240.75-28 chr4 45102900 45103144 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -376388 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 232.75-11 chr2 36549650 36549925 + 1.5 NA 3' UTR (NM_016441, exon 17 of 17) 3' UTR (NM_016441, exon 17 of 17) 48381 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 225.5-46 chr6 124787069 124787224 + 1.5 NA intron (NM_001040214, intron 4 of 6) L2c|LINE|L2 -175399 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 304.5 chr12 121347104 121347436 + 1.5 NA intron (NM_001137559, intron 2 of 16) intron (NM_001137559, intron 2 of 16) 5141 NM_001330489 51433 Hs.7101 NM_016237 ENSG00000089053 ANAPC5 APC5 anaphase promoting complex subunit 5 protein-coding 193.75-23 chr2 96591774 96591915 + 1.5 NA Intergenic Intergenic 46147 NR_047658 55683 Hs.516341 NM_017991 ENSG00000114982 KANSL3 KIAA1310|NSL3|Rcd1 KAT8 regulatory NSL complex subunit 3 protein-coding 189.75-31 chr3 72708951 72709145 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -44799 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 210.5-40 chr3 52888152 52888328 + 1.5 NA intron (NM_001198974, intron 1 of 9) intron (NM_001198974, intron 1 of 9) 9308 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 150.25-51 chr3 67057509 67057725 + 1.5 NA Intergenic L1MB7|LINE|L1 59310 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 150-13 chr10 19393885 19394044 + 1.5 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 334586 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 209-37 chr8 112650620 112650931 + 1.5 NA intron (NM_001363185, intron 16 of 66) intron (NM_001363185, intron 16 of 66) 7282 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 171-29 chr2 44357767 44357912 + 1.5 NA intron (NM_001171617, intron 1 of 13) intron (NM_001171617, intron 1 of 13) 1910 NM_001042385 9581 Hs.444349 NM_006036 ENSG00000138078 PREPL CMS22 prolyl endopeptidase like protein-coding 260-26 chr4 37782188 37782516 + 1.5 NA Intergenic Intergenic -44334 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 440-2 chr5 35266599 35267043 + 1.5 NA Intergenic Intergenic -36334 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 124-7 chr10 9842486 9842627 + 1.5 NA Intergenic MER20|DNA|hAT-Charlie -216166 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 135-14 chr10 107326230 107326402 + 1.5 NA Intergenic L1ME2z|LINE|L1 -161610 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 151-4 chr10 26219468 26219667 + 1.5 NA intron (NM_000818, intron 4 of 16) intron (NM_000818, intron 4 of 16) 2793 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 179.75-33 chr3 62165702 62165944 + 1.5 NA intron (NM_002841, intron 7 of 29) intron (NM_002841, intron 7 of 29) 153124 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 131-85 chrX 3572574 3572680 + 1.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -40376 NR_145722 109616969 NR_145722 ENSG00000212214 SNORA48B - small nucleolar RNA, H/ACA box 48B snoRNA 251.25-2 chr1 92442131 92442314 + 1.5 NA Intergenic Intergenic 41732 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 196.5-31 chr15 93294535 93294779 + 1.5 NA Intergenic L1ME4a|LINE|L1 88591 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 243-24 chr5 14598535 14598843 + 1.5 NA intron (NM_019018, intron 1 of 7) AluJr|SINE|Alu 16897 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 238.5-34 chr6 95246222 95246434 + 1.5 NA Intergenic MER117|DNA|hAT-Charlie 331123 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 127-101 chr9 120148939 120149078 + 1.5 NA Intergenic Intergenic 96042 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 646 chr2 103779019 103779694 + 1.5 NA Intergenic L1MA8|LINE|L1 628976 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 395.25-5 chr6 35966202 35966577 + 1.5 NA intron (NM_001193476, intron 11 of 19) intron (NM_001193476, intron 11 of 19) -45209 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 166.5-45 chr17 60914436 60914615 + 1.5 NA intron (NM_001330413, intron 12 of 25) L1MC5a|LINE|L1 236674 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 139.25-46 chr2 32790791 32790889 + 1.5 NA intron (NM_017735, intron 16 of 19) L1M3|LINE|L1 -34593 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 192-37 chr4 40225493 40225730 + 1.5 NA intron (NM_001278360, intron 2 of 3) intron (NM_001278360, intron 2 of 3) 28580 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 212.25-8 chr10 7626626 7626887 + 1.5 NA intron (NM_001001851, intron 5 of 11) MER53|DNA|hAT -7083 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 340.5-4 chr16 58659894 58660482 + 1.5 NA Intergenic AluSz6|SINE|Alu 24143 NM_001369611 55238 Hs.10499 NM_018231 ENSG00000103042 SLC38A7 SNAT7 solute carrier family 38 member 7 protein-coding 155-33 chr22 49441065 49441250 + 1.5 NA non-coding (NR_110523, exon 2 of 5) non-coding (NR_110523, exon 2 of 5) 102309 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 113.5-98 chr5 110265525 110265649 + 1.5 NA Intergenic Intergenic 248328 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 214.5-33 chr3 21776018 21776207 + 1.5 NA Intergenic L1ME4a|LINE|L1 -24902 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 121-71 chr8 89101761 89101902 + 1.5 NA Intergenic Intergenic 655880 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 172.5-24 chr18 10550512 10550662 + 1.5 NA 3' UTR (NM_003826, exon 12 of 12) 3' UTR (NM_003826, exon 12 of 12) 24560 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 294.5-2 chr1 85625899 85626235 + 1.5 NA Intergenic Intergenic 45306 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 270.75-4 chr12 61958073 61958346 + 1.5 NA intron (NM_178539, intron 1 of 4) L1ME3G|LINE|L1 234630 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 284-22 chr8 119686459 119686741 + 1.5 NA Intergenic Intergenic -13210 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 193 chr1 101758950 101759178 + 1.5 NA Intergenic Intergenic 88016 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 309.75-12 chr9 120998626 120998918 + 1.5 NA TTS (NM_001317164) TTS (NM_001317164) -45941 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 305-20 chr6 131810944 131811240 + 1.5 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 3072 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 238-36 chr8 52084546 52084817 + 1.5 NA Intergenic Intergenic -109681 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 187.5-90 chr9 88911305 88911548 + 1.5 NA Intergenic L1MEc|LINE|L1 -79437 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 189.25-47 chr8 121658726 121659017 + 1.5 NA Intergenic L1M3|LINE|L1 -17431 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 285.5-9 chr2 154745726 154746094 + 1.5 NA intron (NM_002239, intron 2 of 2) L1MB3|LINE|L1 47215 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 314-18 chr8 90620267 90620584 + 1.5 NA Intergenic Intergenic -14362 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 162-55 chr7 3677682 3677823 + 1.5 NA intron (NM_152744, intron 4 of 44) L1MD2|LINE|L1 376500 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 302.25-5 chr15 56829600 56830013 + 1.5 NA Intergenic L1ME3Cz|LINE|L1 -88284 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 138.5-36 chr15 33144830 33144979 + 1.5 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 49810 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 241.25-18 chr6 138618729 138619078 + 1.5 NA Intergenic Intergenic -46334 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 195.25-16 chr14 53882548 53882753 + 1.5 NA Intergenic Intergenic 65834 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 234.75-11 chr12 13365242 13365450 + 1.5 NA Intergenic Intergenic 11399 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 154-65 chr8 86827676 86827845 + 1.5 NA Intergenic Intergenic -38655 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 177-22 chr19 9236970 9237101 + 1.5 NA Intergenic Intergenic -14009 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 243.25-6 chr12 130171713 130171959 + 1.5 NA Intergenic Intergenic 9377 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 208.75-22 chr4 94616365 94616518 + 1.5 NA intron (NM_001256426, intron 11 of 16) MIRb|SINE|MIR 141092 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 227.25-23 chr2 163938086 163938310 + 1.5 NA Intergenic MER57B2|LTR|ERV1 -202190 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 183.5-34 chr19 44041542 44041850 + 1.5 NA Intergenic LTR38C|LTR|ERV1 -10340 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 195-12 chr11 108273036 108273276 + 1.5 NA intron (NM_001351834, intron 23 of 63) intron (NM_001351834, intron 23 of 63) 49627 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 324.75-5 chr14 53070764 53071183 + 1.5 NA intron (NM_030637, intron 6 of 11) intron (NM_030637, intron 6 of 11) 82350 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 234-49 chr9 105938399 105938669 + 1.5 NA Intergenic L1ME4a|LINE|L1 243993 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 194-18 chr2 14581633 14581839 + 1.5 NA Intergenic L1MA7|LINE|L1 -50981 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 115-47 chr21 26873386 26873495 + 1.5 NA Intergenic L1MEd|LINE|L1 -28031 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 310.5-14 chr7 80696884 80697155 + 1.5 NA Intergenic L1M1|LINE|L1 50366 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 250.75-24 chr7 33136390 33136696 + 1.5 NA intron (NM_001348044, intron 1 of 18) L1MB7|LINE|L1 6979 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 125.25-24 chr15 41008657 41008817 + 1.5 NA intron (NR_104038, intron 26 of 34) MER5A1|DNA|hAT-Charlie 55266 NM_001142776 79094 Hs.155569 NM_024111 ENSG00000128965 CHAC1 - ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding 219.5-24 chr2 41784239 41784430 + 1.5 NA Intergenic Intergenic -93221 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 155-40 chr4 25359385 25359664 + 1.5 NA intron (NM_024936, intron 8 of 12) HERVL18-int|LTR|ERVL -17739 NM_013367 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 178-26 chr2 154946815 154947040 + 1.5 NA Intergenic Intergenic 248232 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 192-41 chr5 14595284 14595491 + 1.5 NA intron (NM_019018, intron 1 of 7) intron (NM_019018, intron 1 of 7) 13595 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 230.25-12 chr19 47830944 47831141 + 1.5 NA intron (NM_000554, intron 1 of 3) AluSg|SINE|Alu 9105 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 214.5-34 chr3 81998619 81998833 + 1.5 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 12584 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 287.5-30 chrX 68298396 68298606 + 1.5 NA intron (NM_002547, intron 3 of 24) MIRc|SINE|MIR 134994 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 317.5-9 chr9 131869751 131869978 + 1.5 NA intron (NM_001253881, intron 5 of 6) intron (NM_001253881, intron 5 of 6) -129920 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 202.5-11 chr14 71856074 71856231 + 1.5 NA Intergenic Intergenic -76019 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 155.25-49 chr4 29055603 29055863 + 1.5 NA Intergenic Intergenic 58949 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 259.75-15 chr3 45470002 45470275 + 1.5 NA intron (NM_001368263, intron 7 of 20) intron (NM_001368263, intron 7 of 20) 39407 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 200.25-20 chr14 54083673 54083919 + 1.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -126905 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 191-7 chr10 67425118 67425307 + 1.5 NA intron (NM_001127384, intron 5 of 17) L2c|LINE|L2 -21802 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 298 chr1 189648032 189648417 + 1.5 NA Intergenic MER63A|DNA|hAT-Blackjack 827786 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 189.5-27 chr2 75230805 75231050 + 1.5 NA Intergenic L1ME3B|LINE|L1 -31407 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 140.75-45 chr4 58662690 58662907 + 1.25 NA Intergenic THE1B-int|LTR|ERVL-MaLR -126470 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 134.75-20 chr17 45235048 45235198 + 1.25 NA intron (NM_005892, intron 6 of 26) L2c|LINE|L2 -12802 NR_024434 100133991 Hs.668927 NR_024434 ENSG00000267278 MAP3K14-AS1 - MAP3K14 antisense RNA 1 ncRNA 507-2 chr20 5660952 5661716 + 1.25 NA Intergenic L1PB4|LINE|L1 -50328 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 147.5-76 chr7 32457812 32458007 + 1.25 NA non-coding (NR_038454, exon 1 of 1) non-coding (NR_038454, exon 1 of 1) 585 NR_038454 100130673 Hs.609282 NR_038454 LOC100130673 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo 120.75-21 chr12 14729339 14729488 + 1.25 NA Intergenic L1MA7|LINE|L1 -32814 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 231.25-3 chr1 199430563 199430830 + 1.25 NA Intergenic L1MA9|LINE|L1 282098 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 185.75-6 chr10 55260265 55260471 + 1.25 NA intron (NM_001354404, intron 2 of 34) L2|LINE|L2 -338674 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 131.75-17 chr11 115248327 115248513 + 1.25 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -85157 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 174.5-58 chr3 129719841 129720070 + 1.25 NA intron (NM_001349271, intron 2 of 4) AluJb|SINE|Alu 4158 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 236.5-37 chr4 63039449 63039748 + 1.25 NA Intergenic Intergenic -877833 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 247.75-14 chr2 165615588 165615853 + 1.25 NA intron (NM_024969, intron 2 of 4) L1MA5|LINE|L1 43384 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 164.5-53 chr3 81138743 81138919 + 1.25 NA Intergenic Intergenic 144963 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 153-42 chr5 54636790 54636981 + 1.25 NA Intergenic MIR|SINE|MIR 66439 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 139.5-104 chr8 78947684 78947929 + 1.25 NA Intergenic MLT1E|LTR|ERVL-MaLR 110277 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 161 chr1 6912793 6913021 + 1.25 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 127453 NR_146204 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 239.75-30 chr7 92542067 92542406 + 1.25 NA Intergenic L1MA3|LINE|L1 13441 NM_001363366 84060 Hs.21590 NM_032120 ENSG00000127993 RBM48 C7orf64|HSPC304 RNA binding motif protein 48 protein-coding 213.25-11 chr12 14176412 14176656 + 1.25 NA Intergenic AluJb|SINE|Alu -189098 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 239-8 chr10 56899553 56899768 + 1.25 NA Intergenic Intergenic 404899 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 142.5-38 chr18 44532707 44532834 + 1.25 NA intron (NR_131768, intron 1 of 4) MIRc|SINE|MIR 991 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 170.75-21 chr13 107441645 107441861 + 1.25 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 89495 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 145.25-81 chr8 48020189 48020395 + 1.25 NA intron (NM_003350, intron 1 of 3) AluJo|SINE|Alu 11861 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 233.5-27 chr2 210963369 210963665 + 1.25 NA Intergenic L1ME3E|LINE|L1 345946 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 133.5-77 chr4 43277844 43278017 + 1.25 NA Intergenic Intergenic 214613 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 130.25-34 chr16 83325051 83325197 + 1.25 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -183222 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 128.5-6 chr1 201233934 201234048 + 1.25 NA Intergenic L1MEc|LINE|L1 43166 NM_001164586 91156 Hs.519024 NM_178275 ENSG00000163395 IGFN1 EEF1A2BP1 immunoglobulin like and fibronectin type III domain containing 1 protein-coding 125.25-44 chr2 151249218 151249457 + 1.25 NA 3' UTR (NM_198557, exon 4 of 4) 3' UTR (NM_198557, exon 4 of 4) 12526 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 196-29 chr4 133415032 133415403 + 1.25 NA Intergenic Intergenic 265923 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 117.25-94 chr8 132349309 132349471 + 1.25 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 97872 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 181.25-38 chr22 41108275 41108441 + 1.25 NA intron (NM_001429, intron 1 of 30) AluJo|SINE|Alu 15766 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 172-22 chr2 100448474 100448877 + 1.25 NA Intergenic Intergenic -21807 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 194.75-5 chr10 78132465 78132759 + 1.25 NA Intergenic Intergenic 98749 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 194.75-33 chr4 79935402 79935631 + 1.25 NA intron (NM_001286781, intron 16 of 16) intron (NM_001286781, intron 16 of 16) 108045 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 160-36 chr5 123104241 123104497 + 1.25 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -14053 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 185-43 chr8 117672732 117673026 + 1.25 NA Intergenic Intergenic 152166 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 126-55 chr22 25709646 25709813 + 1.25 NA intron (NM_001362778, intron 14 of 19) intron (NM_001362778, intron 14 of 19) -32459 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 287.25-10 chr22 28308293 28308606 + 1.25 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -151420 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 204.5-46 chr4 135390251 135390762 + 1.25 NA Intergenic MER1B|DNA|hAT-Charlie -266947 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 130.25-84 chr8 86059649 86059773 + 1.25 NA intron (NM_033126, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 9957 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 269.75-10 chr2 85021761 85022177 + 1.25 NA intron (NM_020122, intron 1 of 6) AluSq10|SINE|Alu 45378 NR_146453 100996478 Hs.434398 NR_146453 ENSG00000260840 LINC01964 - long intergenic non-protein coding RNA 1964 ncRNA 172.5-84 chr8 46345406 46345616 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 272132 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 261-40 chr6 68416955 68417399 + 1.25 NA Intergenic Intergenic -87278 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 167-52 chr5 33219920 33220163 + 1.25 NA Intergenic Intergenic -9694 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 302-14 chr21 22377465 22377720 + 1.25 NA Intergenic Intergenic 278975 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 152.75-28 chr2 37687695 37687920 + 1.25 NA Intergenic Intergenic -15272 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 141.5-89 chr5 27046237 27046392 + 1.25 NA Intergenic Intergenic -7728 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 159.5-11 chr1 244013659 244013844 + 1.25 NA intron (NR_033883, intron 6 of 11) intron (NR_033883, intron 6 of 11) -35188 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 325.25-9 chr4 61990070 61990465 + 1.25 NA intron (NM_001371343, intron 18 of 23) L1MB7|LINE|L1 171498 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 268.5-5 chr12 32972226 32972715 + 1.25 NA Intergenic AluJb|SINE|Alu -75624 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 184.5-64 chr5 84836027 84836308 + 1.25 NA Intergenic L1PA5|LINE|L1 -451287 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 188.5-6 chr10 127602929 127603170 + 1.25 NA Intergenic LTR40a|LTR|ERVL 53700 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 119-53 chr3 139787586 139787749 + 1.25 NA Intergenic L2a|LINE|L2 -109617 NM_001200047 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 359.75-5 chr3 60555245 60555536 + 1.25 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 62480 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 159.5-34 chr18 52516037 52516319 + 1.25 NA intron (NM_005215, intron 1 of 28) L1MD1|LINE|L1 175981 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 219-10 chr15 95070713 95071062 + 1.25 NA Intergenic L1M5|LINE|L1 215524 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 140.25-8 chr10 75555733 75555943 + 1.25 NA intron (NM_001305581, intron 2 of 6) L1MEf|LINE|L1 3380 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 183.25-42 chr5 84540990 84541222 + 1.25 NA Intergenic L1MA4|LINE|L1 -156226 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 155.25-23 chr15 60749392 60749585 + 1.25 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 67919 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 192.5-23 chr16 72793398 72793656 + 1.25 NA exon (NM_006885, exon 9 of 10) exon (NM_006885, exon 9 of 10) -128557 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 223.25-7 chr12 18459678 18460021 + 1.25 NA intron (NM_001288774, intron 18 of 32) AluSx1|SINE|Alu 198309 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 183.5-58 chr4 155516394 155516555 + 1.25 NA Intergenic Intergenic -139509 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 136.75-41 chr18 77773251 77773486 + 1.25 NA Intergenic L2b|LINE|L2 220359 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 334.25-8 chr5 77367862 77368201 + 1.25 NA intron (NM_001029854, intron 9 of 20) intron (NM_001029854, intron 9 of 20) 124285 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 114.75-42 chr18 40727698 40727920 + 1.25 NA Intergenic L1MEb|LINE|L1 661523 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 199.75-45 chr9 108039719 108039935 + 1.25 NA Intergenic Intergenic -550058 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 294.5 chr1 33732999 33733268 + 1.25 NA intron (NM_052896, intron 15 of 69) intron (NM_052896, intron 15 of 69) -127342 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 120.75-83 chr5 172667303 172667478 + 1.25 NA intron (NM_001308177, intron 1 of 3) AluSz|SINE|Alu 5225 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 492.25 chr4 70712349 70713056 + 1.25 NA intron (NM_001130709, intron 1 of 11) intron (NM_001130709, intron 1 of 11) 7765 NM_001130709 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 168.25-35 chr21 25205696 25205892 + 1.25 NA Intergenic Intergenic 225907 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 139.25-39 chr16 53167923 53168130 + 1.25 NA intron (NM_001352127, intron 2 of 38) A-rich|Low_complexity|Low_complexity 12100 NM_001308319 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 262.75-14 chr3 26557471 26557810 + 1.25 NA Intergenic Intergenic -65166 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 242.75-22 chr8 50611366 50611603 + 1.25 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 447353 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 205.25-31 chr5 57358585 57358876 + 1.25 NA Intergenic L2a|LINE|L2 124081 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 206.75-18 chr2 108397884 108398133 + 1.25 NA Intergenic MER4-int|LTR|ERV1 20054 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 163.25-4 chr1 237197992 237198190 + 1.25 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 155907 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 183.75-47 chr6 63102722 63102944 + 1.25 NA Intergenic Intergenic 217144 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 135.75-18 chr10 111091623 111091757 + 1.25 NA Intergenic L1ME4c|LINE|L1 14661 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 244.25-8 chr15 61268747 61269021 + 1.25 NA Intergenic L1ME4a|LINE|L1 -39582 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 374.25-3 chr2 37310186 37310599 + 1.25 NA intron (NM_005813, intron 1 of 17) MIR|SINE|MIR 6692 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 219.5-45 chr6 119537927 119538230 + 1.25 NA Intergenic L1MEf|LINE|L1 -11730 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 291-10 chr3 64473135 64473454 + 1.25 NA Intergenic Intergenic -88052 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 114-11 chr10 43603093 43603210 + 1.25 NA Intergenic MER31B|LTR|ERV1 -3256 NM_001318140 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 177.5-41 chr20 57163582 57163760 + 1.25 NA Intergenic Intergenic -50025 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 246.5-19 chr5 107672398 107673052 + 1.25 NA Intergenic (CCCCTC)n|Simple_repeat|Simple_repeat -1788 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 158-12 chr11 114802745 114802900 + 1.25 NA Intergenic Intergenic 124295 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 183-55 chr4 170251219 170251480 + 1.25 NA intron (NR_125889, intron 1 of 2) Charlie4|DNA|hAT-Charlie 24758 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 189-23 chr16 71278790 71278998 + 1.25 NA Intergenic L1MC5a|LINE|L1 10508 NM_001099642 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 168-63 chr7 122664628 122664857 + 1.25 NA intron (NM_001167940, intron 2 of 29) intron (NM_001167940, intron 2 of 29) 34375 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 223.75-13 chr2 229930231 229930542 + 1.25 NA intron (NM_174899, intron 1 of 3) intron (NM_174899, intron 1 of 3) -7206 NM_001348335 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 183.5-28 chr16 85991663 85991875 + 1.25 NA Intergenic Intergenic 73422 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 238-7 chr11 36300217 36300548 + 1.25 NA intron (NM_001160167, intron 1 of 8) MSTB|LTR|ERVL-MaLR 4094 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 187.75-14 chr14 71501867 71502217 + 1.25 NA intron (NM_001284247, intron 1 of 23) AluJb|SINE|Alu 14181 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 113.5-106 chr6 55794609 55794879 + 1.25 NA intron (NM_001329754, intron 2 of 5) intron (NM_001329754, intron 2 of 5) 80846 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 214.5-6 chr11 45706263 45706487 + 1.25 NA Intergenic Intergenic -14599 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 157-20 chr14 61189858 61190070 + 1.25 NA Intergenic (TTTCTT)n|Simple_repeat|Simple_repeat 91374 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 141.75-56 chr3 94169838 94169963 + 1.25 NA Intergenic MER5C|DNA|hAT-Charlie 106839 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 176-14 chr12 40636790 40636983 + 1.25 NA Intergenic Intergenic -55553 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 147.25-7 chr11 93361464 93361604 + 1.25 NA intron (NM_181645, intron 4 of 13) L1MDa|LINE|L1 30817 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 196-42 chr7 113718519 113718748 + 1.25 NA Intergenic MLT1A1|LTR|ERVL-MaLR 200376 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 241.5-36 chr7 108501514 108501935 + 1.25 NA intron (NM_001256010, intron 4 of 9) AluSx1|SINE|Alu 24411 NM_001256009 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 120-85 chr7 122623044 122623197 + 1.25 NA intron (NM_001167940, intron 4 of 29) intron (NM_001167940, intron 4 of 29) 75997 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 127-68 chr4 62204336 62204511 + 1.25 NA Intergenic MER50|LTR|ERV1 -42658 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 255.5 chr1 25849183 25849508 + 1.25 NA intron (NM_024037, intron 1 of 2) L1MB7|LINE|L1 10112 NM_024037 79000 Hs.149305 NM_024037 ENSG00000127423 AUNIP AIBP|C1orf135 aurora kinase A and ninein interacting protein protein-coding 291.75-14 chr3 3983290 3983740 + 1.25 NA Intergenic Intergenic -182640 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 175-61 chrX 88769000 88769239 + 1.25 NA Intergenic L1MB7|LINE|L1 21894 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 170.25-48 chr4 36988137 36988299 + 1.25 NA Intergenic L1PA4|LINE|L1 -13561 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 295.25-14 chr6 45708199 45708477 + 1.25 NA Intergenic Intergenic 229259 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 226.5-39 chr4 114228491 114228844 + 1.25 NA Intergenic Intergenic -249020 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 122.25-13 chr10 104131724 104131916 + 1.25 NA intron (NM_025145, intron 36 of 37) intron (NM_025145, intron 36 of 37) 9649 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 179.75-4 chr1 168947904 168948166 + 1.25 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 138970 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 166-49 chr6 16186151 16186308 + 1.25 NA Intergenic Intergenic 44673 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 126.25-78 chr6 67984146 67984326 + 1.25 NA Intergenic Intergenic -71115 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 129-57 chr5 86925647 86925772 + 1.25 NA Intergenic Intergenic 178891 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 125.5-124 chr8 109194018 109194186 + 1.25 NA Intergenic L1MC1|LINE|L1 107474 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 183.75-15 chr14 58053671 58053928 + 1.25 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 98414 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 188.25-22 chr2 20518433 20518627 + 1.25 NA Intergenic L2a|LINE|L2 -17006 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 174.75-40 chr4 171901815 171902064 + 1.25 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -88332 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 166.5-32 chr14 72183141 72183419 + 1.25 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 249753 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 143.5-16 chr11 37592097 37592275 + 1.25 NA Intergenic Intergenic -346415 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 215-45 chr9 99651106 99651325 + 1.25 NA intron (NR_109802, intron 3 of 6) L1PREC2|LINE|L1 168674 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 228.25-29 chr5 91528908 91529269 + 1.25 NA Intergenic L2c|LINE|L2 -145771 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 118.75-42 chr18 3143294 3143476 + 1.25 NA intron (NM_019856, intron 13 of 36) L1ME1|LINE|L1 76583 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 164.25-64 chr9 18427240 18427516 + 1.25 NA Intergenic Intergenic -46775 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 178-42 chr5 27789823 27790080 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 317659 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 186-6 chr1 232182754 232182968 + 1.25 NA Intergenic Intergenic 257027 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 183-31 chr2 112333687 112333910 + 1.25 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 58201 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 197.25-47 chr4 81138905 81139169 + 1.25 NA intron (NM_006259, intron 12 of 18) intron (NM_006259, intron 12 of 18) 15120 NM_001282480 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 121.5-30 chr13 79948905 79949026 + 1.25 NA Intergenic Intergenic -62112 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 177.25-50 chr7 35521380 35521634 + 1.25 NA Intergenic Intergenic 173628 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 143.5-37 chr15 93378537 93378695 + 1.25 NA Intergenic MIR3|SINE|MIR 172550 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 237.75-24 chr2 117789183 117789504 + 1.25 NA Intergenic Intergenic -25348 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 121.25-16 chr12 117032030 117032154 + 1.25 NA TTS (NM_012174) TTS (NM_012174) -44755 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 143.5-35 chr15 59011695 59011898 + 1.25 NA intron (NM_001270530, intron 1 of 13) MLT1B|LTR|ERVL-MaLR 23650 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 166-33 chr2 11778103 11778322 + 1.25 NA intron (NM_001349203, intron 6 of 20) intron (NM_001349203, intron 6 of 20) 10768 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 186.25-15 chr13 61709427 61709721 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL -281628 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 154.75-56 chr6 117818882 117819089 + 1.25 NA Intergenic L1MEf|LINE|L1 -88279 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 222.25-23 chr3 113879971 113880223 + 1.25 NA intron (NM_017577, intron 5 of 17) intron (NM_017577, intron 5 of 17) -17403 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 139-59 chr6 146930577 146930748 + 1.25 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -126838 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 146.75-12 chr12 113120557 113120820 + 1.25 NA intron (NM_004658, intron 6 of 21) intron (NM_004658, intron 6 of 21) 14911 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 255.5-30 chr8 105640976 105641202 + 1.25 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 321546 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 160.5-15 chr13 30853064 30853221 + 1.25 NA Intergenic L1M3|LINE|L1 -29420 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 281.5-15 chr5 6900058 6900605 + 1.25 NA Intergenic Intergenic -72410 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 166.25-17 chr14 49862763 49862961 + 1.25 NA promoter-TSS (NR_027260) promoter-TSS (NR_027260) -13 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 156-65 chr8 50090488 50090701 + 1.25 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -73537 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 188.75-45 chr7 5673456 5673729 + 1.25 NA intron (NR_046834, intron 1 of 2) intron (NR_046834, intron 1 of 2) 6869 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 194.75 chr1 226031001 226031156 + 1.25 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -31638 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 206.5-13 chr13 107278115 107278438 + 1.25 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 42687 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 152-72 chr9 80764044 80764241 + 1.25 NA Intergenic Intergenic 789119 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 120.5-62 chr21 33762153 33762356 + 1.25 NA intron (NM_001001132, intron 9 of 29) L1MC5|LINE|L1 119753 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 328.5-7 chr15 63659670 63660038 + 1.25 NA exon (NM_003922, exon 47 of 78) exon (NM_003922, exon 47 of 78) -59027 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 165.5-68 chr4 89337623 89337893 + 1.25 NA Intergenic L3|LINE|CR1 -29958 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 197.5-68 chrX 68242268 68242500 + 1.25 NA intron (NM_002547, intron 5 of 24) AluJr|SINE|Alu 191111 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 147.75-76 chr7 52818085 52818253 + 1.25 NA Intergenic L1MA9|LINE|L1 -217464 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 139.5-65 chr3 178259092 178259387 + 1.25 NA Intergenic L1MDa|LINE|L1 -159962 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 264-9 chr14 72735334 72735867 + 1.25 NA intron (NM_001280544, intron 3 of 9) MIR3|SINE|MIR 157049 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 132.75-95 chr7 131483389 131483568 + 1.25 NA intron (NM_001321316, intron 17 of 17) Tigger17a|DNA|TcMar-Tigger 73150 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 229-19 chr20 39986369 39986638 + 1.25 NA Intergenic Intergenic -17958 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 284.5-16 chr2 176667608 176667864 + 1.25 NA Intergenic Intergenic 29982 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 216.75-3 chr1 38847085 38847365 + 1.25 NA intron (NM_022157, intron 5 of 6) intron (NM_022157, intron 5 of 6) 12547 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 187.25-53 chr5 41860087 41860444 + 1.25 NA intron (NR_157114, intron 3 of 15) intron (NR_157114, intron 3 of 15) -9765 NR_046635 100874002 Hs.375537 NR_046635 ENSG00000248668 OXCT1-AS1 - OXCT1 antisense RNA 1 ncRNA 181.75-7 chr11 87179224 87179453 + 1.25 NA intron (NR_033149, intron 4 of 13) L1ME1|LINE|L1 141404 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 259.25-5 chr15 89608413 89608827 + 1.25 NA intron (NM_001308025, intron 14 of 21) intron (NM_001308025, intron 14 of 21) 33033 NM_001308025 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 252.5-34 chr7 16485710 16485939 + 1.25 NA Intergenic Intergenic -20086 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 145-48 chr3 115630442 115630575 + 1.25 NA intron (NM_002045, intron 1 of 2) intron (NM_002045, intron 1 of 2) 6998 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 144-34 chr2 214546489 214546655 + 1.25 NA intron (NR_159945, intron 4 of 4) intron (NR_159945, intron 4 of 4) 36390 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 237.75-21 chr19 28174744 28175001 + 1.25 NA Intergenic MIRc|SINE|MIR -380932 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 157.25-62 chr8 81506710 81506851 + 1.25 NA Intergenic Intergenic -23547 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 172.75-44 chr8 81532287 81532539 + 1.25 NA Intergenic Intergenic -1023 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 168.25-12 chr11 80940331 80940521 + 1.25 NA Intergenic Intergenic -177623 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 225.5-34 chr3 112575099 112575437 + 1.25 NA intron (NM_001348908, intron 3 of 4) intron (NM_001348908, intron 3 of 4) 13223 NM_001348911 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 253.75 chr1 180592153 180592539 + 1.25 NA Intergenic AluJo|SINE|Alu 33372 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 150.25-83 chrX 27232369 27232597 + 1.25 NA Intergenic Intergenic 230858 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 199-42 chr6 155109614 155109843 + 1.25 NA intron (NM_012454, intron 1 of 25) MIR3|SINE|MIR 19439 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 180.25-2 chr1 44237885 44238061 + 1.25 NA intron (NR_110056, intron 2 of 3) intron (NR_110056, intron 2 of 3) 6310 NR_046817 100874278 Hs.132497 NR_046817 ENSG00000233602 ERI3-IT1 - ERI3 intronic transcript 1 ncRNA 293.5 chr1 41439191 41439459 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 45358 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 194-38 chr7 40772907 40773258 + 1.25 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 206857 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 283.25-2 chr1 51174668 51175001 + 1.25 NA Intergenic AluSz|SINE|Alu 60262 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 192.75-10 chr14 51819113 51819315 + 1.25 NA Intergenic Intergenic -41398 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 197.25-63 chr8 139510379 139510570 + 1.25 NA Intergenic Intergenic 192649 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 245.5-9 chr15 79444205 79444549 + 1.25 NA intron (NM_015206, intron 1 of 3) L1ME4a|LINE|L1 11861 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 197.75-8 chr12 72401455 72401767 + 1.25 NA intron (NM_013381, intron 3 of 18) L1M4|LINE|L1 -128102 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 161.75-17 chr15 36302342 36302549 + 1.25 NA Intergenic Intergenic -277181 NM_001321760 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 207-49 chr7 8810239 8810435 + 1.25 NA Intergenic L1MA7|LINE|L1 376728 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 235.75-29 chr9 27550717 27551043 + 1.25 NA intron (NM_001256054, intron 8 of 10) intron (NM_001256054, intron 8 of 10) -21066 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 247.75-3 chr13 53382262 53382690 + 1.25 NA Intergenic L1M3d|LINE|L1 -230576 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 196.25-20 chr15 33866615 33866785 + 1.25 NA TTS (NM_001036) TTS (NM_001036) -101797 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 278-20 chr5 155958995 155959431 + 1.25 NA Intergenic Intergenic -367544 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 235.75-11 chr16 2388130 2388526 + 1.25 NA intron (NR_003574, intron 8 of 16) MER76|LTR|ERVL -41119 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 144.25-24 chr16 11991827 11991974 + 1.25 NA intron (NM_032167, intron 1 of 20) intron (NM_032167, intron 1 of 20) 15166 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 148.5-16 chr11 112774936 112775078 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -186413 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 187.5-64 chr6 12101884 12102148 + 1.25 NA intron (NM_002114, intron 3 of 8) L1M4b|LINE|L1 89704 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 233.5-13 chr12 85983423 85983683 + 1.25 NA exon (NM_001351289, exon 5 of 6) exon (NM_001351289, exon 5 of 6) 109258 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 269.5-12 chr13 76090994 76091404 + 1.25 NA Intergenic L1MEg|LINE|L1 -156067 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 192.5 chr1 91889969 91890172 + 1.25 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) -3919 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 121.5-116 chrX 78457025 78457197 + 1.25 NA Intergenic HERV35I-int|LTR|ERV1 -129420 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 192.75-43 chr7 85473937 85474149 + 1.25 NA intron (NR_134240, intron 2 of 3) intron (NR_134240, intron 2 of 3) 52921 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 277.5-4 chr14 49572562 49573016 + 1.25 NA 3' UTR (NM_001030001, exon 3 of 3) 3' UTR (NM_001030001, exon 3 of 3) 13591 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 287.5-10 chr15 58465018 58465487 + 1.25 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 33261 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 278.25-11 chr2 39678518 39678830 + 1.25 NA intron (NM_152390, intron 1 of 3) L1MB5|LINE|L1 12757 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 134-15 chr10 65152006 65152184 + 1.25 NA Intergenic L1MB3|LINE|L1 -227577 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 155.75-25 chr2 69042400 69042665 + 1.25 NA intron (NM_032208, intron 2 of 17) L2|LINE|L2 29388 NM_032208 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 181-8 chr10 51120561 51120799 + 1.25 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 46193 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 178.75-56 chr7 82872685 82872871 + 1.25 NA intron (NM_033026, intron 10 of 24) L1ME3Cz|LINE|L1 290106 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 224.25-31 chr8 127788684 127789025 + 1.25 NA Intergenic MIRc|SINE|MIR -5679 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 169-12 chr12 85986005 85986321 + 1.25 NA intron (NM_001351284, intron 4 of 5) intron (NM_001351284, intron 4 of 5) 111868 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 144-18 chr12 18768464 18768652 + 1.25 NA Intergenic Intergenic 30439 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 205-7 chr10 52501415 52501698 + 1.25 NA Intergenic L1MB8|LINE|L1 -31023 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 200.75-3 chr1 61875191 61875414 + 1.25 NA exon (NM_176877, exon 21 of 43) exon (NM_176877, exon 21 of 43) 29227 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 152.25-56 chr6 61655620 61655811 + 1.25 NA intron (NR_146873, intron 10 of 11) intron (NR_146873, intron 10 of 11) 81585 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 127.75-42 chr17 78016819 78017047 + 1.25 NA intron (NM_018996, intron 2 of 20) MIR|SINE|MIR 12696 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 176.5-14 chr11 81206999 81207186 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie -444289 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 184.25-6 chr10 21428089 21428372 + 1.25 NA Intergenic AluJb|SINE|Alu -55280 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 130-43 chr21 18767781 18767935 + 1.25 NA Intergenic L1ME4b|LINE|L1 -8046 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 134.5-59 chr3 67994623 67994814 + 1.25 NA intron (NM_001252216, intron 1 of 4) intron (NM_001252216, intron 1 of 4) 3126 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 178.75-60 chr8 137636047 137636198 + 1.25 NA Intergenic L3|LINE|CR1 -222534 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 116.5-58 chr2 104216356 104216505 + 1.25 NA Intergenic MIRb|SINE|MIR 191902 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 134-48 chr22 34870436 34870631 + 1.25 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 127383 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 127.25-42 chr18 11701238 11701368 + 1.25 NA intron (NM_182978, intron 1 of 11) intron (NM_182978, intron 1 of 11) 12039 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 126-23 chr12 41527523 41527853 + 1.25 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 89949 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 232.5-19 chr18 72572413 72572788 + 1.25 NA Intergenic FLAM_A|SINE|Alu -28258 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 236.75-9 chr16 61438436 61438757 + 1.25 NA Intergenic Intergenic -382830 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 159.75-25 chr2 36194022 36194162 + 1.25 NA Intergenic MIR3|SINE|MIR 161478 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 326.5-6 chr2 10509498 10509889 + 1.25 NA Intergenic L1MB7|LINE|L1 59965 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 196.75-15 chr18 10413874 10414037 + 1.25 NA non-coding (NR_110775, exon 1 of 3) non-coding (NR_110775, exon 1 of 3) 415 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 261.75-24 chr6 153645208 153645566 + 1.25 NA Intergenic L2a|LINE|L2 -365109 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 145.25-30 chr16 13646105 13646265 + 1.25 NA Intergenic Intergenic -273972 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 297.75-7 chr14 77082955 77083225 + 1.25 NA Intergenic LTR88a|LTR|Gypsy? -6899 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 179.5-60 chr2 228724647 228724850 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -113353 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 121.25-31 chr2 3808207 3808459 + 1.25 NA intron (NM_001287444, intron 10 of 10) L1ME1|LINE|L1 101491 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 167.25-48 chr3 54955090 54955266 + 1.25 NA intron (NM_001304389, intron 1 of 2) LTR48|LTR|ERV1 11924 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 209.75-9 chr14 49106542 49106818 + 1.25 NA Intergenic Intergenic 479700 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 140.5-18 chr12 68880489 68880671 + 1.25 NA intron (NM_001874, intron 3 of 8) intron (NM_001874, intron 3 of 8) 52591 NM_198320 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 145.25-3 chr1 33688182 33688310 + 1.25 NA intron (NM_052896, intron 25 of 69) L1ME3G|LINE|L1 -172229 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 151-12 chr12 68134933 68135076 + 1.25 NA Intergenic Intergenic 24736 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 192.75-36 chr5 119403820 119404047 + 1.25 NA Intergenic L1MD2|LINE|L1 47914 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 112.75-60 chr3 51714480 51714659 + 1.25 NA intron (NM_001349117, intron 4 of 6) intron (NM_001349117, intron 4 of 6) 7501 NM_001349117 2912 Hs.121510 NM_000839 ENSG00000164082 GRM2 GLUR2|GPRC1B|MGLUR2|mGlu2 glutamate metabotropic receptor 2 protein-coding 154.25-5 chr1 201250082 201250250 + 1.25 NA Intergenic Intergenic -33286 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 368-2 chr17 4246127 4246604 + 1.25 NA intron (NR_047571, intron 1 of 23) intron (NR_047571, intron 1 of 23) 17482 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 120.5-20 chr12 1084591 1084772 + 1.25 NA intron (NR_027948, intron 3 of 19) AluJr4|SINE|Alu 56933 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 141.25-34 chr15 64595408 64595579 + 1.25 NA intron (NM_015042, intron 1 of 8) MLT1K|LTR|ERVL-MaLR 96073 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 196-41 chr6 162647615 162647799 + 1.25 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -79425 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 214.5-7 chr11 81703227 81703437 + 1.25 NA Intergenic L1MCb|LINE|L1 187504 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 172-23 chr2 102750529 102750698 + 1.25 NA intron (NM_001321346, intron 1 of 3) intron (NM_001321346, intron 1 of 3) -11418 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 127.75-68 chr4 146486339 146486446 + 1.25 NA intron (NM_032128, intron 4 of 4) intron (NM_032128, intron 4 of 4) 35548 NM_001300842 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 210.25-24 chr2 124385573 124385755 + 1.25 NA intron (NM_130773, intron 3 of 23) MIRb|SINE|MIR 360377 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 296.25 chr10 26825496 26825821 + 1.25 NA intron (NM_001012752, intron 1 of 9) AluSq|SINE|Alu 35429 NM_001178116 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 209.25-37 chr5 169401413 169401681 + 1.25 NA Intergenic L1MC5|LINE|L1 -100408 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 129.25-48 chr20 42625687 42625855 + 1.25 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -59712 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 131.25-22 chr11 46115556 46115787 + 1.25 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 5148 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 167.75-33 chr2 76198258 76198453 + 1.25 NA Intergenic Intergenic -487440 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 283.5-25 chr7 140560270 140560653 + 1.25 NA intron (NM_001318052, intron 8 of 18) intron (NM_001318052, intron 8 of 18) 42081 NR_134477 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 349.5 chr1 159676335 159676765 + 1.25 NA Intergenic HAL1ME|LINE|L1 38039 NM_001329057 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 185.5-22 chr11 124784458 124784623 + 1.25 NA intron (NM_001352401, intron 1 of 4) intron (NM_001352401, intron 1 of 4) -8298 NM_001312920 79684 Hs.146079 NM_024631 ENSG00000120458 MSANTD2 C11orf61 Myb/SANT DNA binding domain containing 2 protein-coding 257.75-11 chr18 3956649 3956998 + 1.25 NA intron (NM_001242761, intron 3 of 11) AluJb|SINE|Alu -5530 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 139.5-88 chr6 6086183 6086416 + 1.25 NA Intergenic Intergenic -78694 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 153.25-33 chr21 23364628 23364848 + 1.25 NA intron (NR_040254, intron 3 of 4) intron (NR_040254, intron 3 of 4) 20097 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 202.5-18 chr2 35940476 35940723 + 1.25 NA Intergenic Intergenic 414971 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 276.25-5 chr16 53996452 53996755 + 1.25 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -42790 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 133.25-77 chr7 84848447 84848605 + 1.25 NA Intergenic Intergenic 273405 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 125.75-29 chr17 63793175 63793367 + 1.25 NA intron (NM_203499, intron 3 of 17) AluJr|SINE|Alu 19082 NM_007372 11325 Hs.702010 NM_007372 ENSG00000198231 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD-box helicase 42 protein-coding 233-13 chr12 66388313 66388553 + 1.25 NA intron (NM_001366722, intron 19 of 24) intron (NM_001366722, intron 19 of 24) 85888 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 305-5 chr11 70771724 70772070 + 1.25 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -90893 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 134.5-26 chr15 67225548 67225770 + 1.25 NA intron (NM_001271885, intron 5 of 9) L1MB7|LINE|L1 29002 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 183.5-7 chr1 151695065 151695272 + 1.25 NA 3' UTR (NM_001330723, exon 12 of 12) 3' UTR (NM_001330723, exon 12 of 12) 21635 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 225.25-12 chr2 103829788 103830062 + 1.25 NA Intergenic L1PA16|LINE|L1 578407 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 273.5-11 chr18 5883327 5883741 + 1.25 NA Intergenic Intergenic 12420 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 228.25-23 chr3 27390475 27390869 + 1.25 NA intron (NM_001258380, intron 20 of 23) intron (NM_001258380, intron 20 of 23) -21212 NM_152534 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 160.5-50 chr3 99223470 99223692 + 1.25 NA Intergenic L1MA3|LINE|L1 -321886 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 176.5-50 chr2 146418304 146418514 + 1.25 NA Intergenic L1MEc|LINE|L1 -168648 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 145-41 chr20 42425882 42426080 + 1.25 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -259502 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 219.75-45 chr8 130409119 130409493 + 1.25 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 34354 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 156.5-31 chr2 45247739 45247907 + 1.25 NA intron (NR_033831, intron 1 of 5) L1MCa|LINE|L1 7118 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 170.75-39 chr2 64314208 64314459 + 1.25 NA Intergenic Intergenic -26426 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 206.5-7 chr10 123563959 123564146 + 1.25 NA Intergenic MLT2B2|LTR|ERVL -102303 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 142.5-53 chr3 64843764 64843911 + 1.25 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -155837 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 279.25-15 chr2 160103489 160103773 + 1.25 NA intron (NM_001282390, intron 13 of 13) intron (NM_001282390, intron 13 of 13) -41016 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 175.5-48 chr21 21881583 21881849 + 1.25 NA Intergenic Intergenic 134731 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 130-60 chr4 161006649 161006833 + 1.25 NA Intergenic Intergenic -1015992 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 146.75-44 chr5 27716689 27716865 + 1.25 NA Intergenic L1MB8|LINE|L1 244485 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 144.25-75 chr8 28539666 28539881 + 1.25 NA intron (NM_017412, intron 5 of 7) intron (NM_017412, intron 5 of 7) -34591 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 197.5-10 chr10 118319398 118319673 + 1.25 NA intron (NM_022063, intron 7 of 8) intron (NM_022063, intron 7 of 8) 22789 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 137-71 chr8 136398497 136398704 + 1.25 NA Intergenic MIR|SINE|MIR -132198 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 203-14 chr15 70925339 70925607 + 1.25 NA intron (NM_017691, intron 7 of 15) Kanga1|DNA|TcMar-Tc2 33030 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 230-23 chr6 119392067 119392364 + 1.25 NA Intergenic Intergenic -42454 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 173-20 chr15 76767991 76768200 + 1.25 NA intron (NM_020843, intron 10 of 31) L1MEc|LINE|L1 93849 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 158.5-21 chr11 15606801 15607051 + 1.25 NA Intergenic X6B_LINE|LINE|CR1 -36959 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 153.25-52 chr8 63672962 63673191 + 1.25 NA Intergenic L1MC5a|LINE|L1 -96354 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 264.25-5 chr16 77066336 77066667 + 1.25 NA Intergenic L1PA11|LINE|L1 -124689 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 262.5-13 chr17 69391119 69391404 + 1.25 NA Intergenic Intergenic -23436 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 205-23 chr2 127392903 127393164 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR -25387 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 303-10 chr4 101431586 101431874 + 1.25 NA Intergenic MER1B|DNA|hAT-Charlie 83953 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 143.5-42 chr18 64042537 64042667 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -61489 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 238.25-25 chr7 23416436 23416637 + 1.25 NA intron (NM_006547, intron 3 of 14) L1MC5a|LINE|L1 20090 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 245.5-2 chr1 234762293 234762647 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -2414 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 247.5-32 chr6 26531150 26531604 + 1.25 NA Intergenic Intergenic -6989 NM_006353 10473 Hs.236774 NM_006353 ENSG00000182952 HMGN4 HMG17L3|NHC high mobility group nucleosomal binding domain 4 protein-coding 139.75-74 chr8 130822738 130822913 + 1.25 NA intron (NM_001115, intron 12 of 17) MIRb|SINE|MIR 218084 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 297.75-15 chr5 16294387 16294724 + 1.25 NA Intergenic MER65A|LTR|ERV1 114314 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 182.25-39 chr4 40222944 40223220 + 1.25 NA intron (NM_001278360, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 26051 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 135.75-80 chr5 123773933 123774120 + 1.25 NA Intergenic Intergenic 228609 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 197 chr1 98632583 98632788 + 1.25 NA Intergenic L2|LINE|L2 -29036 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 120-78 chr6 47437375 47437584 + 1.25 NA Intergenic FLAM_C|SINE|Alu -40310 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 195-63 chr8 119753889 119754124 + 1.25 NA intron (NM_003184, intron 22 of 25) intron (NM_003184, intron 22 of 25) 78835 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 293.5-16 chr4 44120977 44121280 + 1.25 NA Intergenic Intergenic 104066 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 195.25-26 chr2 188334908 188335112 + 1.25 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 37518 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 270.75-17 chr4 44152017 44152316 + 1.25 NA Intergenic Intergenic 135104 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 348.25-2 chr11 11897339 11897896 + 1.25 NA exon (NM_017944, exon 4 of 27) exon (NM_017944, exon 4 of 27) 56194 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 217.75-18 chr19 28064602 28064813 + 1.25 NA Intergenic HAL1M8|LINE|L1 -270767 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 197-43 chr5 67847597 67847782 + 1.25 NA Intergenic Intergenic 54476 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 135-36 chr19 30345223 30345526 + 1.25 NA Intergenic Intergenic -27010 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 269.5-3 chr1 114565757 114566006 + 1.25 NA Intergenic AluJo|SINE|Alu 15734 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 167.5-43 chr2 205647632 205647876 + 1.25 NA Intergenic Intergenic -34746 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 197.5-35 chr2 155843320 155843619 + 1.25 NA Intergenic Intergenic 411462 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 194.5-56 chr4 154729421 154729681 + 1.25 NA Intergenic Intergenic -11290 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 227.25-14 chr14 41360412 41360693 + 1.25 NA Intergenic MIRc|SINE|MIR -246304 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 148-19 chr14 42689826 42690058 + 1.25 NA Intergenic L2c|LINE|L2 1083086 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 303.5-15 chr6 38630845 38631195 + 1.25 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 8909 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 198.75-31 chr4 44272293 44272549 + 1.25 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 176388 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 194.75-10 chr12 26798563 26798897 + 1.25 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 34464 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 287-23 chr9 35308496 35308814 + 1.25 NA intron (NM_001371189, intron 9 of 39) intron (NM_001371189, intron 9 of 39) -33241 NM_001371187 252-13 chr2 19541886 19542112 + 1.25 NA Intergenic Intergenic -183376 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 154.25-37 chr2 37992141 37992293 + 1.25 NA intron (NM_001170793, intron 6 of 9) MIRb|SINE|MIR 41753 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 188.25-26 chr2 104644093 104644316 + 1.25 NA Intergenic Intergenic 113515 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 127-96 chr8 121467103 121467266 + 1.25 NA Intergenic Intergenic -172162 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 166-54 chr7 29146093 29146292 + 1.25 NA promoter-TSS (NM_001293069) promoter-TSS (NM_001293069) 345 NM_031311 54504 Hs.233389 NM_019029 ENSG00000106066 CPVL HVLP carboxypeptidase vitellogenic like protein-coding 245.75-19 chr8 106712691 106712910 + 1.25 NA intron (NM_181354, intron 8 of 13) intron (NM_181354, intron 8 of 13) -13307 NM_001198534 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 148.25-56 chr4 149171604 149171915 + 1.25 NA intron (NR_125887, intron 2 of 12) MIR|SINE|MIR 17464 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 135.25-2 chr1 172283026 172283260 + 1.25 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -137542 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 221-9 chr10 121773141 121773467 + 1.25 NA intron (NM_001001976, intron 11 of 11) intron (NM_001001976, intron 11 of 11) 154727 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 168.75-46 chr5 31533975 31534177 + 1.25 NA intron (NR_134298, intron 1 of 8) intron (NR_134298, intron 1 of 8) 1775 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 219-37 chr8 67065584 67065810 + 1.25 NA intron (NM_001363133, intron 1 of 27) AluJo|SINE|Alu 1305 NM_001363131 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 258.75-22 chr4 79367879 79368199 + 1.25 NA Intergenic Intergenic 40189 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 248.75-5 chr14 61732952 61733292 + 1.25 NA intron (NM_181054, intron 7 of 13) AluSx|SINE|Alu 15967 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 270.5-9 chr15 51941798 51942231 + 1.25 NA intron (NM_001323903, intron 11 of 12) intron (NM_001323903, intron 11 of 12) -17894 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 294-18 chr8 83615168 83615467 + 1.25 NA Intergenic Intergenic 211559 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 133.5-54 chr2 221174882 221175078 + 1.25 NA Intergenic Intergenic 397324 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 191.25-15 chr11 74974302 74974483 + 1.25 NA intron (NM_014752, intron 4 of 4) L2a|LINE|L2 -14252 NM_001367860 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 281-6 chr14 53487598 53487947 + 1.25 NA Intergenic L1MA9|LINE|L1 334418 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 186.75-60 chr7 90503394 90503647 + 1.25 NA intron (NM_001365443, intron 6 of 6) Tigger1|DNA|TcMar-Tigger 33881 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 160-40 chr6 162768301 162768546 + 1.25 NA intron (NM_001080379, intron 1 of 4) L1MEd|LINE|L1 40453 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 287-20 chr7 56006184 56006459 + 1.25 NA Intergenic AluJo|SINE|Alu 41736 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 169.5-70 chr6 62163412 62163680 + 1.25 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 122679 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 152.5-68 chr3 49333427 49333650 + 1.25 NA intron (NM_199443, intron 2 of 20) Tigger1|DNA|TcMar-Tigger 6515 NM_199443 7375 Hs.77500 NM_003363 ENSG00000114316 USP4 UNP|Unph ubiquitin specific peptidase 4 protein-coding 165.5 chr1 37828680 37828825 + 1.25 NA intron (NM_005955, intron 7 of 10) intron (NM_005955, intron 7 of 10) -20544 NM_024640 79693 Hs.301564 NM_024640 ENSG00000196449 YRDC DRIP3|IRIP|SUA5 yrdC N6-threonylcarbamoyltransferase domain containing protein-coding 114-24 chr12 38584751 38584873 + 1.25 NA Intergenic L1M7|LINE|L1 268038 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 225.25-30 chr6 133515205 133515433 + 1.25 NA intron (NM_172103, intron 15 of 18) intron (NM_172103, intron 15 of 18) 273820 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 215.75-21 chr5 43879190 43879420 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -276075 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 221.25-31 chr5 174132795 174133112 + 1.25 NA Intergenic Intergenic 87247 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 145.5-30 chr14 74066036 74066209 + 1.25 NA TTS (NM_025057) TTS (NM_025057) 18331 NM_001278594 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 162.25-5 chr10 114338060 114338284 + 1.25 NA intron (NM_001001936, intron 2 of 18) L3b|LINE|CR1 66330 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 207.5-12 chr12 1054373 1054552 + 1.25 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 26714 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 308.5-3 chr11 74744514 74744955 + 1.25 NA Intergenic Intergenic -4115 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 200.75-15 chr15 73800879 73801098 + 1.25 NA Intergenic Intergenic 32774 NR_120352 101929221 NR_120352 INSYN1-AS1 C15orf59-AS1 INSYN1 antisense RNA 1 ncRNA 218.25-46 chr8 101220627 101220836 + 1.25 NA Intergenic L1MA5|LINE|L1 -14667 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 148.25-5 chr1 241833781 241833968 + 1.25 NA Intergenic Intergenic -14317 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 269.25-8 chr17 69619824 69620162 + 1.25 NA intron (NR_109972, intron 2 of 4) ERV3-16A3_I-int|LTR|ERVL 26006 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 138.5-19 chr11 106928731 106928850 + 1.25 NA intron (NM_001256424, intron 4 of 8) Tigger3a|DNA|TcMar-Tigger 89686 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 158.75-62 chr6 38354770 38354956 + 1.25 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -126733 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 130.25-70 chr5 12594996 12595138 + 1.25 NA intron (NR_033383, intron 1 of 3) intron (NR_033383, intron 1 of 3) 20210 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 240-7 chr12 34285682 34285964 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 263327 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 128.75-58 chr3 84463182 84463404 + 1.25 NA Intergenic L1MA3|LINE|L1 406282 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 216.25-21 chr2 177822740 177823052 + 1.25 NA intron (NM_001077197, intron 7 of 20) L1ME3A|LINE|L1 65860 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 159.5-20 chr12 74673437 74673654 + 1.25 NA Intergenic Intergenic 135710 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 165.5-97 chrX 68942272 68942540 + 1.25 NA Intergenic Intergenic 113409 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 237.75-3 chr1 208092265 208092555 + 1.25 NA intron (NM_025179, intron 9 of 31) intron (NM_025179, intron 9 of 31) 151974 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 186.5-30 chr2 77658944 77659362 + 1.25 NA Intergenic Intergenic -136720 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 207.5-7 chr11 41308172 41308404 + 1.25 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 151348 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 304 chr10 106408080 106408558 + 1.25 NA Intergenic Intergenic 268154 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 393-2 chr14 74070532 74071176 + 1.25 NA intron (NM_001278593, intron 6 of 11) intron (NM_001278593, intron 6 of 11) 13599 NM_001278594 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 166.5-101 chr8 108164211 108164442 + 1.25 NA Intergenic Intergenic -80706 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 187.5-71 chr7 289625 289785 + 1.25 NA Intergenic CpG -89720 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 136-71 chr9 32972949 32973133 + 1.25 NA non-coding (NR_160931, exon 8 of 8) non-coding (NR_160931, exon 8 of 8) 28535 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 133.5-30 chr14 83730030 83730191 + 1.25 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1087478 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 187.75-15 chr14 85564290 85564506 + 1.25 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 31049 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 133.25-89 chr9 68909438 68909563 + 1.25 NA intron (NM_003558, intron 8 of 15) L1MC5|LINE|L1 66341 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 223-21 chr2 79271483 79271847 + 1.25 NA Intergenic Intergenic -111912 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 188-6 chr12 40399693 40399993 + 1.25 NA intron (NM_173600, intron 2 of 173) intron (NM_173600, intron 2 of 173) 6449 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 173.25-44 chr3 74349509 74349707 + 1.25 NA intron (NM_020872, intron 10 of 21) intron (NM_020872, intron 10 of 21) 171532 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 191.25-19 chr13 99630582 99630779 + 1.25 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) -12379 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 267.75-7 chr2 125146175 125146653 + 1.25 NA Intergenic Intergenic 971571 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 190.75-26 chr18 13555917 13556189 + 1.25 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -55061 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 135.25-99 chr9 93089504 93089658 + 1.25 NA Intergenic Intergenic -6636 NM_001318010 84270 Hs.434213 NM_032310 ENSG00000165233 CARD19 BinCARD|C9orf89 caspase recruitment domain family member 19 protein-coding 196.25-12 chr12 93118515 93118849 + 1.25 NA intron (NR_040096, intron 3 of 4) AluJo|SINE|Alu -55684 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 175-54 chr6 157124352 157124545 + 1.25 NA intron (NM_020732, intron 7 of 19) intron (NM_020732, intron 7 of 19) 88021 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 153-38 chr4 77613166 77613299 + 1.25 NA Intergenic MIRc|SINE|MIR 101479 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 120.25-2 chr1 60742250 60742416 + 1.25 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 83251 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 136.25-38 chr17 30263390 30263560 + 1.25 NA intron (NM_000386, intron 11 of 11) intron (NM_000386, intron 11 of 11) -27778 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 129.25-22 chr12 93933250 93933430 + 1.25 NA intron (NR_135017, intron 1 of 2) MER4B|LTR|ERV1 10266 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 209.25-54 chr9 24521107 24521503 + 1.25 NA Intergenic Intergenic 24371 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 199-12 chr12 75798874 75799079 + 1.25 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 232800 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 319-4 chr17 73897649 73898076 + 1.25 NA Intergenic MER117|DNA|hAT-Charlie -69325 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 207.5-46 chr5 12436815 12437012 + 1.25 NA Intergenic Intergenic -137944 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 183-64 chr7 46561394 46561581 + 1.25 NA Intergenic L1PA7|LINE|L1 135635 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 265.25-20 chr21 28277479 28277863 + 1.25 NA Intergenic Intergenic -49004 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 241-20 chr2 228773724 228773993 + 1.25 NA Intergenic LTR16B|LTR|ERVL -162463 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 185.25-20 chr16 53302787 53302991 + 1.25 NA intron (NM_001352157, intron 29 of 37) MER119|DNA|hAT-Charlie 68323 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 129.75-56 chr3 84552121 84552234 + 1.25 NA Intergenic L1MB7|LINE|L1 317398 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 176.75-32 chr3 65728182 65728323 + 1.25 NA intron (NM_001365904, intron 1 of 24) L2b|LINE|L2 -165564 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 206.5-20 chr14 74292301 74292574 + 1.25 NA intron (NR_148472, intron 10 of 17) intron (NR_148472, intron 10 of 17) 10497 NM_001353603 5826 Hs.94395 NM_005050 ENSG00000119688 ABCD4 ABC41|EST352188|MAHCJ|P70R|P79R|PMP69|PXMP1L ATP binding cassette subfamily D member 4 protein-coding 206.75-3 chr10 61388115 61388387 + 1.25 NA Intergenic L2a|LINE|L2 -64388 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 303.25-3 chr12 20162860 20163370 + 1.25 NA Intergenic Intergenic -35214 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 114.5-95 chr7 18464583 18464716 + 1.25 NA intron (NM_001204144, intron 3 of 12) L1ME3A|LINE|L1 -31061 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 243.25-10 chr3 107640858 107641083 + 1.25 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 118008 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 301.25-5 chr4 52401217 52401549 + 1.25 NA Intergenic L1MD1|LINE|L1 255156 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 121.75-74 chr6 62033711 62033885 + 1.25 NA intron (NR_146874, intron 3 of 13) L1MA2|LINE|L1 252427 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 112.75-25 chr12 19632823 19632922 + 1.25 NA Intergenic MIRc|SINE|MIR 192273 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 166.25-47 chr4 94600652 94600820 + 1.25 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 148794 NM_001011513 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 152.25-52 chr5 143529970 143530338 + 1.25 NA Intergenic Intergenic -94642 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 158.75-22 chr16 27167464 27167689 + 1.25 NA Intergenic Intergenic -35950 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 171-27 chr18 5571147 5571334 + 1.25 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -26901 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 126.75-25 chr15 24908681 24908825 + 1.25 NA intron (NM_001349456, intron 2 of 12) PABL_B|LTR|ERV1 -46140 NM_005678 8926 Hs.564847 NM_005678 ENSG00000273173 SNURF - SNRPN upstream reading frame protein-coding 138.5-68 chr3 11706292 11706409 + 1.25 NA intron (NM_014667, intron 1 of 5) intron (NM_014667, intron 1 of 5) 14189 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 167.25-68 chr6 15534822 15535090 + 1.25 NA intron (NR_036448, intron 8 of 9) intron (NR_036448, intron 8 of 9) 128072 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 165-9 chr11 17706188 17706349 + 1.25 NA Intergenic L1MC5|LINE|L1 -9329 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 171.25-5 chr10 63557729 63557908 + 1.25 NA intron (NM_001001330, intron 1 of 7) L4_B_Mam|LINE|RTE-X -35928 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 302.25-15 chr8 115573924 115574484 + 1.25 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 93809 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 238-2 chr1 69538116 69538498 + 1.25 NA Intergenic Intergenic -29027 NM_001366836 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 168.25-11 chr11 63372357 63372609 + 1.25 NA intron (NM_080866, intron 2 of 9) L1ME3A|LINE|L1 2698 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 225-34 chr7 49510583 49510816 + 1.25 NA Intergenic L1M4|LINE|L1 -262939 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 179-13 chr10 109081385 109081634 + 1.25 NA Intergenic L1MB5|LINE|L1 841737 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 188.5-44 chr5 121366316 121366579 + 1.25 NA Intergenic Intergenic 43897 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 128-34 chr3 15303624 15303819 + 1.25 NA intron (NM_001018009, intron 3 of 8) intron (NM_001018009, intron 3 of 8) 28865 NM_004844 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 182.5-42 chr3 76239077 76239346 + 1.25 NA Intergenic Intergenic -453662 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 222.25-31 chr8 118066022 118066230 + 1.25 NA intron (NM_000127, intron 1 of 10) Tigger2a|DNA|TcMar-Tigger 45693 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 174-13 chr14 28733421 28733670 + 1.25 NA intron (NR_125758, intron 4 of 6) intron (NR_125758, intron 4 of 6) 31774 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 229.5-33 chr3 86334754 86335170 + 1.25 NA Intergenic Intergenic -146981 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 128.75-68 chr4 42309423 42309623 + 1.25 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 81745 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 220.75-3 chr1 172660316 172660561 + 1.25 NA intron (NM_000639, intron 2 of 3) intron (NM_000639, intron 2 of 3) 1335 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 134.75 chr1 26579149 26579471 + 1.25 NA Intergenic AluJr|SINE|Alu 24768 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 194.25-8 chr11 105827458 105827772 + 1.25 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 194625 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 127.25-5 chr1 105662051 105662290 + 1.25 NA Intergenic Intergenic -43235 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 193.75-7 chr10 77388467 77388757 + 1.25 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 37740 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 151.75-8 chr10 114358992 114359131 + 1.25 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 45441 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 128.25-13 chr10 78394793 78394971 + 1.25 NA Intergenic L1MB8|LINE|L1 127540 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 215.25-24 chr4 94927017 94927374 + 1.25 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -69037 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 208.5-26 chr15 98066095 98066326 + 1.25 NA Intergenic MER57E1|LTR|ERV1 22543 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 320-10 chr2 195635284 195635804 + 1.25 NA Intergenic Charlie1a|DNA|hAT-Charlie -21414 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 129-10 chr10 81566085 81566201 + 1.25 NA Intergenic Intergenic -309051 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 170.75-42 chr2 114261117 114261324 + 1.25 NA Intergenic L1M7|LINE|L1 -181421 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 171-37 chr3 102513738 102514145 + 1.25 NA Intergenic Intergenic 78926 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 294.75-6 chr16 6840814 6841201 + 1.25 NA intron (NM_001142334, intron 1 of 13) MLT1A0|LTR|ERVL-MaLR 67198 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 159.25-61 chr6 77756225 77756417 + 1.25 NA intron (NM_001282136, intron 2 of 4) intron (NM_001282136, intron 2 of 4) 103282 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 161-57 chr6 48014183 48014393 + 1.25 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 54401 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 143.75-75 chr6 158461385 158461715 + 1.25 NA intron (NM_020245, intron 5 of 13) intron (NM_020245, intron 5 of 13) -74886 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 164.25-24 chr17 79509001 79509153 + 1.25 NA intron (NM_001350451, intron 1 of 14) MER5B|DNA|hAT-Charlie 7071 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 143.5-23 chr12 43469344 43469570 + 1.25 NA intron (NM_025003, intron 7 of 38) intron (NM_025003, intron 7 of 38) 82746 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 264.5-14 chr16 9722576 9722956 + 1.25 NA Intergenic Intergenic -267261 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 161.5-81 chr7 84485587 84485829 + 1.25 NA Intergenic Intergenic -46768 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 135-40 chr2 66895254 66895423 + 1.25 NA Intergenic Intergenic -9098 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 200.5-44 chr3 77816334 77816624 + 1.25 NA Intergenic Intergenic 232484 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 267.25-9 chr3 21540092 21540346 + 1.25 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -2570 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 161-14 chr11 14208904 14209112 + 1.25 NA intron (NM_006108, intron 6 of 15) L1M5|LINE|L1 149477 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 195.5-70 chr4 129111358 129111653 + 1.25 NA intron (NM_001099783, intron 5 of 5) intron (NM_001099783, intron 5 of 5) 15353 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 243.75-18 chr3 59080089 59080440 + 1.25 NA Intergenic Intergenic -30232 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 157.5-20 chr13 63372791 63372943 + 1.25 NA Intergenic Intergenic -44773 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 181.5-58 chr6 41952276 41952449 + 1.25 NA intron (NM_001136017, intron 1 of 4) LTR16C|LTR|ERVL -10514 NM_001136125 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 190.5-60 chr5 15167618 15167875 + 1.25 NA Intergenic L1MEd|LINE|L1 98814 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 303.75-3 chr2 134893618 134894103 + 1.25 NA intron (NR_036549, intron 1 of 4) L1MB7|LINE|L1 24746 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 232-22 chr5 97691625 97691917 + 1.25 NA Intergenic Intergenic -148987 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 174.5-14 chr11 78132563 78132810 + 1.25 NA intron (NM_001007027, intron 1 of 13) L2a|LINE|L2 6940 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 196.5-66 chr6 137274590 137274825 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity -55277 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 202.75 chr1 45037587 45037807 + 1.25 NA intron (NM_020883, intron 8 of 13) intron (NM_020883, intron 8 of 13) 25443 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 203.75 chr1 67127224 67127509 + 1.25 NA intron (NM_001276352, intron 2 of 8) intron (NM_001276352, intron 2 of 8) 7604 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 281.75-20 chr9 32259711 32260061 + 1.25 NA Intergenic Intergenic -124717 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 269.75-8 chr18 5814739 5815022 + 1.25 NA Intergenic L2|LINE|L2 -25815 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 170.75-14 chr10 122437491 122437736 + 1.25 NA 3' UTR (NM_001001974, exon 12 of 12) 3' UTR (NM_001001974, exon 12 of 12) -17040 NM_001099667 387715 Hs.120359 NM_001099667 ENSG00000254636 ARMS2 ARMD8 age-related maculopathy susceptibility 2 protein-coding 118.25-112 chr8 113231537 113231674 + 1.25 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 145547 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 151-37 chr2 133421590 133421777 + 1.25 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 146780 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 266.75-7 chr4 150484760 150484998 + 1.25 NA intron (NM_001367550, intron 42 of 56) L1ME1|LINE|L1 -94210 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 250.5-31 chr8 29986305 29986699 + 1.25 NA Intergenic Intergenic -29154 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 343-5 chr2 118370842 118371345 + 1.25 NA Intergenic Intergenic -184707 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 113.5-24 chr11 116331306 116331500 + 1.25 NA Intergenic Intergenic -308019 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 245.25-21 chr4 67386825 67387175 + 1.25 NA Intergenic Intergenic 35000 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 185.5-40 chr2 80529548 80529813 + 1.25 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 216301 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 218-28 chr20 63604456 63604696 + 1.25 NA intron (NM_012384, intron 3 of 9) intron (NM_012384, intron 3 of 9) 22525 NM_012384 26205 Hs.473286 NM_012384 ENSG00000101216 GMEB2 GMEB-2|P79PIF|PIF79 glucocorticoid modulatory element binding protein 2 protein-coding 139.25-82 chr8 104005480 104005630 + 1.25 NA intron (NM_001348500, intron 15 of 20) L2c|LINE|L2 186335 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 165-11 chr11 61178042 61178234 + 1.25 NA Intergenic L1MC1|LINE|L1 -16712 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 259.5-15 chr2 56443568 56443900 + 1.25 NA Intergenic MER58B|DNA|hAT-Charlie -257964 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 144.5-10 chr1 246155799 246155938 + 1.25 NA intron (NM_022743, intron 5 of 11) AluSz|SINE|Alu 261544 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 119-26 chr14 67934968 67935152 + 1.25 NA intron (NM_133509, intron 7 of 10) L2c|LINE|L2 111468 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 236.75-5 chr12 33805966 33806330 + 1.25 NA Intergenic Tigger4|DNA|TcMar-Tigger -216348 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 328.5-10 chr2 79783302 79783610 + 1.25 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 83127 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 163.25-39 chr2 207110169 207110384 + 1.25 NA promoter-TSS (NR_036227) promoter-TSS (NR_036227) -203 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 121.75-32 chr17 70938260 70938447 + 1.25 NA Intergenic Intergenic 263826 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 171-59 chr8 118508329 118508497 + 1.25 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -112588 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 271.75-9 chr4 64941628 64941912 + 1.25 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 62730 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 420-4 chr5 105318297 105318912 + 1.25 NA Intergenic L2a|LINE|L2 219130 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 208.25-24 chr3 169148333 169148606 + 1.25 NA promoter-TSS (NM_001164000) promoter-TSS (NM_001164000) -998 NM_001366469 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 254-2 chr14 25342991 25343310 + 1.25 NA Intergenic L1PA7|LINE|L1 -292853 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 253-16 chr22 49291955 49292292 + 1.25 NA Intergenic Intergenic 251343 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 187.5-88 chr8 127999238 127999412 + 1.25 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -9573 NR_031611 100302170 NR_031611 ENSG00000283200 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 194.75-49 chr8 117754326 117754588 + 1.25 NA Intergenic Intergenic 166456 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 289.25-10 chr21 36119947 36120214 + 1.25 NA intron (NR_040084, intron 1 of 3) AluJr4|SINE|Alu 6560 NR_040084 100133286 Hs.728809 NR_040084 ENSG00000230212 LOC100133286 - uncharacterized LOC100133286 ncRNA 162.75-36 chr2 66584426 66584620 + 1.25 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 10493 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 249.5-9 chr18 6975242 6975488 + 1.25 NA intron (NM_005559, intron 45 of 62) intron (NM_005559, intron 45 of 62) 20688 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 222.5-40 chr5 57214842 57215314 + 1.25 NA intron (NM_022913, intron 3 of 11) intron (NM_022913, intron 3 of 11) 1004 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 241.25-19 chr9 27904895 27905137 + 1.25 NA Intergenic Intergenic -331150 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 224.75-16 chr4 43889950 43890129 + 1.25 NA Intergenic Intergenic -126822 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 258.5-18 chr6 155248542 155248771 + 1.25 NA intron (NM_001010927, intron 6 of 12) intron (NM_001010927, intron 6 of 12) -15357 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 247-21 chr3 144400002 144400199 + 1.25 NA Intergenic L1MA2|LINE|L1 427019 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 183.5-71 chr6 74304984 74305201 + 1.25 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 235641 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 153.75-40 chr2 58649010 58649247 + 1.25 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 128375 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 307.25-4 chr16 51594137 51594560 + 1.25 NA Intergenic Intergenic -168171 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 178.5-22 chr17 27297596 27297801 + 1.25 NA intron (NM_134265, intron 1 of 6) AluJb|SINE|Alu 3584 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 169.25-10 chr11 37672332 37672482 + 1.25 NA Intergenic Intergenic -266194 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 261-2 chr1 157807161 157807487 + 1.25 NA intron (NM_001159397, intron 1 of 9) intron (NM_001159397, intron 1 of 9) 12796 NM_001159398 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 152.25-54 chr5 179347409 179347653 + 1.25 NA Intergenic MER113|DNA|hAT-Charlie -2070 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 126.5-45 chr18 5658975 5659154 + 1.25 NA Intergenic Intergenic -30073 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 230-7 chr15 59982573 59982872 + 1.25 NA Intergenic L1MEf|LINE|L1 -21589 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 149.5-58 chr2 187931545 187931773 + 1.25 NA Intergenic MER52-int|LTR|ERV1 356032 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 235.75-21 chr4 73693049 73693425 + 1.25 NA Intergenic Intergenic -47332 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 122-9 chr10 12034010 12034172 + 1.25 NA intron (NM_080599, intron 2 of 21) MIRb|SINE|MIR 8718 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 112.75-37 chr16 73322165 73322323 + 1.25 NA Intergenic Intergenic -64561 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 204-41 chr8 136181982 136182261 + 1.25 NA Intergenic L2c|LINE|L2 -348677 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 191.75-10 chr14 40020841 40021084 + 1.25 NA Intergenic MIR1_Amn|SINE|MIR -588462 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 254-10 chr2 210504121 210504715 + 1.25 NA intron (NM_001122633, intron 1 of 38) MIR|SINE|MIR -15300 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 272.75-7 chr11 38598275 38598501 + 1.25 NA Intergenic Intergenic 47968 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 175.5-69 chr6 142763404 142763648 + 1.25 NA intron (NM_006734, intron 7 of 9) MamGypLTR1b|LTR|Gypsy -125637 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 252-19 chr3 54299659 54300073 + 1.25 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 177314 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 188-24 chr2 213912652 213912958 + 1.25 NA intron (NR_047660, intron 10 of 14) intron (NR_047660, intron 10 of 14) 154738 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 233.75-3 chr1 170655578 170655866 + 1.25 NA Intergenic Intergenic -8409 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 213.5-14 chr13 107862293 107862559 + 1.25 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 5070 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 221.5-42 chr6 155089606 155089851 + 1.25 NA promoter-TSS (NM_012454) promoter-TSS (NM_012454) -561 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 179.25-13 chr13 31829205 31829483 + 1.25 NA Intergenic Intergenic -17439 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 151-25 chr17 58479170 58479386 + 1.25 NA intron (NM_001080439, intron 2 of 5) intron (NM_001080439, intron 2 of 5) 9130 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 185.25-29 chr2 176534040 176534362 + 1.25 NA Intergenic Intergenic 66851 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 183-6 chr1 245003520 245003786 + 1.25 NA intron (NM_001290327, intron 2 of 7) AluJr|SINE|Alu -32784 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 126 chr1 98456994 98457156 + 1.25 NA Intergenic Intergenic -204646 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 228.25-18 chr2 229492267 229492596 + 1.25 NA intron (NM_139072, intron 6 of 12) intron (NM_139072, intron 6 of 12) -221144 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 128.25-75 chr6 165807166 165807348 + 1.25 NA Intergenic Intergenic -144977 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 180.75-8 chr1 186163773 186164035 + 1.25 NA intron (NM_031935, intron 97 of 106) MER20B|DNA|hAT-Charlie -132369 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 176.5 chr1 46681962 46682146 + 1.25 NA intron (NM_014774, intron 10 of 10) intron (NM_014774, intron 10 of 10) 8018 NR_038828 100130197 Hs.568643 NR_038827 ENSG00000228237 EFCAB14-AS1 KIAA0494-AS1 EFCAB14 antisense RNA 1 ncRNA 192.75-13 chr15 69883333 69883586 + 1.25 NA Intergenic MLT1A1|LTR|ERVL-MaLR 48225 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 163.25-51 chr4 169708516 169708738 + 1.25 NA intron (NM_173872, intron 11 of 13) intron (NM_173872, intron 11 of 13) 48565 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 253-14 chr20 39303729 39303983 + 1.25 NA Intergenic MLT1J2|LTR|ERVL-MaLR -79108 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 131.5-26 chr14 45371658 45371853 + 1.25 NA Intergenic Intergenic -118553 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 148.25-10 chr10 120815660 120815893 + 1.25 NA intron (NR_033850, intron 1 of 2) L1MEc|LINE|L1 35403 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 172.25-7 chr10 65860683 65860835 + 1.25 NA Intergenic L1MEf|LINE|L1 289334 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 234.25-27 chr5 62557920 62558267 + 1.25 NA intron (NM_016338, intron 26 of 29) MamRep38|DNA|hAT -20642 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 159.25-6 chr10 74142090 74142269 + 1.25 NA intron (NM_207012, intron 1 of 9) intron (NM_207012, intron 1 of 9) 8649 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 174.25-56 chr7 75840180 75840430 + 1.25 NA Intergenic AluJo|SINE|Alu -16933 NM_001371193 227.25-38 chr8 102403707 102404021 + 1.25 NA intron (NM_001282873, intron 1 of 58) L1ME1|LINE|L1 8825 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 178.25-19 chr14 75298126 75298374 + 1.25 NA Intergenic Intergenic 3846 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 240.5-17 chr14 52074507 52074857 + 1.25 NA Intergenic L2|LINE|L2 -5623 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 184.5-45 chr2 236232440 236232722 + 1.25 NA intron (NM_212556, intron 3 of 5) L1ME1|LINE|L1 31764 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 194-40 chr8 105031521 105031716 + 1.25 NA Intergenic L1ME4a|LINE|L1 -286820 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 219-3 chr1 91384406 91384926 + 1.25 NA intron (NM_001017975, intron 6 of 38) MER5C1|DNA|hAT-Charlie 20171 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 208.5-3 chr1 88674012 88674251 + 1.25 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -10013 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 165.5-84 chr7 52793571 52793748 + 1.25 NA Intergenic Intergenic -241974 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 173.5-56 chr20 39439623 39439871 + 1.25 NA Intergenic L1MD2|LINE|L1 -214999 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 165.25-14 chr12 121477323 121477683 + 1.25 NA intron (NM_001005366, intron 12 of 22) AluJo|SINE|Alu -33151 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 129.5-63 chr3 98576805 98577069 + 1.25 NA Intergenic Intergenic 16674 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 133-34 chr18 73213649 73213755 + 1.25 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 50796 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 156.25-40 chr2 194833471 194833664 + 1.25 NA Intergenic L1MD1|LINE|L1 102972 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 170-21 chr2 89841006 89841199 + 1.25 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203195 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 197.75-23 chr2 180660352 180660575 + 1.25 NA Intergenic Intergenic -31641 NR_104323 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 160.5-68 chr7 15023889 15024052 + 1.25 NA Intergenic Intergenic -49112 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 404.5-3 chr3 88208576 88209071 + 1.25 NA Intergenic L1MEf|LINE|L1 58864 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 138.25-55 chr22 25087006 25087199 + 1.25 NA intron (NM_001145206, intron 4 of 10) MIRb|SINE|MIR 25590 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 258.25-23 chr7 73854606 73855034 + 1.25 NA Intergenic MIRb|SINE|MIR -6339 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 357.5-8 chr2 211438569 211438965 + 1.25 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 821196 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 161.5-56 chr3 87634734 87635057 + 1.25 NA Intergenic L2|LINE|L2 -157811 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 139.75-60 chr5 54532545 54532811 + 1.25 NA intron (NM_001145427, intron 1 of 1) intron (NM_001145427, intron 1 of 1) 14919 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 136-57 chr5 24907223 24907428 + 1.25 NA Intergenic HAL1|LINE|L1 -66742 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 349-3 chr14 64553474 64553815 + 1.25 NA intron (NM_172365, intron 3 of 11) L1ME3|LINE|L1 3683 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 163-22 chr2 26384236 26384376 + 1.25 NA intron (NR_137633, intron 7 of 9) MIR3|SINE|MIR -17614 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 320.75 chr13 113264601 113264995 + 1.25 NA 3' UTR (NM_001278513, exon 20 of 20) 3' UTR (NM_001278513, exon 20 of 20) 1878 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 186.75-45 chr5 12242606 12242875 + 1.25 NA Intergenic Intergenic -332117 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 168.5-45 chr2 115114660 115114840 + 1.25 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 46593 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 161.75-46 chr5 174952655 174952811 + 1.25 NA intron (NR_046113, intron 2 of 2) L2c|LINE|L2 42998 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 230.75-4 chr11 114521891 114522155 + 1.25 NA exon (NM_001367953, exon 8 of 8) exon (NM_001367953, exon 8 of 8) 37858 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 171.25-37 chr3 183652225 183652463 + 1.25 NA intron (NM_001349426, intron 2 of 6) intron (NM_001349426, intron 2 of 6) 16721 NM_001349421 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 141-41 chr2 178527129 178527287 + 1.25 NA exon (NM_133432, exon 192 of 192) exon (NM_133432, exon 192 of 192) 4017 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 163.5-13 chr10 78847300 78847443 + 1.25 NA Intergenic Intergenic 220077 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 291.5-10 chr3 121774152 121774918 + 1.25 NA intron (NM_001023571, intron 10 of 11) L1MB3|LINE|L1 -24768 NM_001256488 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 231.25-14 chr16 78690789 78691008 + 1.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 591244 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 319.25-2 chr1 218040693 218041108 + 1.25 NA Intergenic Intergenic -2605 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 138.75-49 chr4 31737149 31737299 + 1.25 NA Intergenic Intergenic 230680 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 166.25-19 chr15 57041603 57041791 + 1.25 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 122252 NM_001322165 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 228.5-34 chr8 62743241 62743513 + 1.25 NA intron (NM_001304533, intron 3 of 6) MER39|LTR|ERV1 -234484 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 158.75-18 chr14 22467468 22467611 + 1.25 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) 15420 NR_148361 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 182.25-19 chr2 13273909 13274218 + 1.25 NA Intergenic Intergenic -267050 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 140.5-23 chr14 29499539 29499755 + 1.25 NA Intergenic MIRb|SINE|MIR 427449 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 260-6 chr14 34887238 34887625 + 1.25 NA Intergenic Intergenic -12071 NM_013448 11177 Hs.509140 NM_013448 ENSG00000198604 BAZ1A ACF1|WALp1|WCRF180|hACF1 bromodomain adjacent to zinc finger domain 1A protein-coding 187.25-18 chr12 45536523 45536787 + 1.25 NA Intergenic Intergenic 191266 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 364-4 chr14 84690039 84690442 + 1.25 NA Intergenic Intergenic -581692 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 229.25-23 chr5 110477491 110477995 + 1.25 NA intron (NM_001039763, intron 12 of 13) Eulor2B|DNA?|DNA? 36172 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 114.75-6 chr10 7152043 7152187 + 1.25 NA Intergenic Intergenic 34669 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 224-30 chr8 32698242 32698471 + 1.25 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) -23397 NM_001159996 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 198.5-4 chr10 34995832 34996028 + 1.25 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 78353 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 344-4 chr14 28650504 28650975 + 1.25 NA Intergenic L1MA8|LINE|L1 114580 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 146-59 chr8 93316985 93317152 + 1.25 NA Intergenic Intergenic -150218 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 140.5-55 chr20 41188914 41189101 + 1.25 NA intron (NM_015035, intron 3 of 3) L1MA4A|LINE|L1 19984 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 187.25-49 chr5 17450022 17450214 + 1.25 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 6108 NR_134270 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 115.25-24 chr12 21119304 21119460 + 1.25 NA Intergenic Intergenic -11812 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 163.25-29 chr14 69389203 69389611 + 1.25 NA intron (NM_004450, intron 2 of 3) L1MC2|LINE|L1 8892 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 194.25-9 chr11 120800360 120800653 + 1.25 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 18609 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 139.25-68 chr5 101591657 101591882 + 1.25 NA Intergenic L1MDa|LINE|L1 -688487 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 136-13 chr12 1897851 1898134 + 1.25 NA intron (NM_172364, intron 6 of 37).2 L1MEd|LINE|L1 20660 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 159.75-45 chr4 78770875 78771009 + 1.25 NA Intergenic Intergenic -5408 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 283.5-8 chr2 115688696 115689074 + 1.25 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 345070 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 203.5-22 chr2 114598915 114599190 + 1.25 NA intron (NM_001321908, intron 2 of 25) MIRb|SINE|MIR 137475 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 193.25-11 chr14 88231993 88232233 + 1.25 NA intron (NM_138317, intron 3 of 6) L1M5|LINE|L1 38798 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 219-25 chr4 79334314 79334504 + 1.25 NA Intergenic Intergenic -8348 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 173.5-65 chr3 89289884 89290071 + 1.25 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 182356 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 172.25-76 chr8 133777210 133777359 + 1.25 NA promoter-TSS (NR_125422) promoter-TSS (NR_125422) 68 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 160.25-53 chr8 3938913 3939136 + 1.25 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1055890 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 160.25-21 chr14 71884583 71884799 + 1.25 NA Intergenic Intergenic -47480 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 324.75-13 chr9 27798620 27799130 + 1.25 NA Intergenic Intergenic -225009 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 172.5-83 chr7 150418975 150419208 + 1.25 NA Intergenic L1M5|LINE|L1 13339 NR_027237 728743 Hs.650365 NM_001080852 LOC728743 - zinc finger protein pseudogene pseudo 171.5-44 chr2 106655190 106655475 + 1.25 NA Intergenic L1MEd|LINE|L1 167968 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 201.5-23 chr18 1265040 1265241 + 1.25 NA Intergenic L1MB3|LINE|L1 94489 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 137.5-60 chr2 138977710 138977963 + 1.25 NA Intergenic L1M2|LINE|L1 80512 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 201.5-52 chr6 91883506 91883723 + 1.25 NA Intergenic Intergenic -193186 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 122.5-34 chr16 50103201 50103374 + 1.25 NA intron (NR_138092, intron 15 of 15) intron (NR_138092, intron 15 of 15) 37317 NM_182922 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 294-17 chr6 39056257 39056733 + 1.25 NA intron (NR_136563, intron 2 of 13) intron (NR_136563, intron 2 of 13) 7714 NR_136562 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 196.5-62 chr6 76660840 76661028 + 1.25 NA Intergenic Intergenic -67311 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 199.75-24 chr3 80915768 80916051 + 1.25 NA Intergenic Intergenic -77959 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 206.75-30 chr7 23141445 23141706 + 1.25 NA intron (NM_001031710, intron 5 of 10) intron (NM_001031710, intron 5 of 10) 34914 NM_018846 55975 Hs.654817 NM_018846 ENSG00000122550 KLHL7 CISS3|KLHL6|SBBI26 kelch like family member 7 protein-coding 141-37 chr2 55809251 55809584 + 1.25 NA Intergenic Intergenic 114365 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 186.75-59 chr7 47960736 47960978 + 1.25 NA Intergenic L1MA6|LINE|L1 -12366 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 265-26 chr8 78855713 78856219 + 1.25 NA Intergenic Intergenic 18437 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 116.75-13 chr11 76916293 76916392 + 1.25 NA intron (NM_001300953, intron 1 of 9) intron (NM_001300953, intron 1 of 9) 55424 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 163.25-45 chr3 102384054 102384458 + 1.25 NA Intergenic Intergenic -50759 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 239.75-13 chr17 10694921 10695203 + 1.25 NA intron (NM_004589, intron 2 of 5) intron (NM_004589, intron 2 of 5) 2471 NM_004589 6341 Hs.14511 NM_004589 ENSG00000133028 SCO1 SCOD1 SCO cytochrome c oxidase assembly protein 1 protein-coding 236-5 chr10 126851032 126851408 + 1.25 NA Intergenic Intergenic -54189 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 172.5-7 chr10 108456840 108457189 + 1.25 NA Intergenic Intergenic -387721 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 303.5-11 chr2 88583589 88583926 + 1.25 NA intron (NM_004836, intron 9 of 16) intron (NM_004836, intron 9 of 16) 41172 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 249.75-20 chr4 63312003 63312394 + 1.25 NA Intergenic Intergenic 1097252 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 249-34 chr5 55272197 55272559 + 1.25 NA intron (NR_144323, intron 17 of 26) intron (NR_144323, intron 17 of 26) 35316 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 162-24 chr2 60152748 60152984 + 1.25 NA Intergenic Tigger19a|DNA|TcMar-Tigger 230170 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 277.25-12 chr17 42967574 42967965 + 1.25 NA TTS (NM_001142653) TTS (NM_001142653) -3315 NM_001261434 80755 Hs.317403 NM_001261434 ENSG00000266967 AARSD1 - alanyl-tRNA synthetase domain containing 1 protein-coding 147.75-32 chr18 2750060 2750196 + 1.25 NA intron (NM_015295, intron 31 of 47) intron (NM_015295, intron 31 of 47) 94241 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 182-14 chr14 74246917 74247078 + 1.25 NA intron (NM_182894, intron 3 of 4) intron (NM_182894, intron 3 of 4) 7548 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 190-8 chr11 114838276 114838457 + 1.25 NA Intergenic L1ME4a|LINE|L1 159839 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 152-69 chr9 25650589 25650908 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie 28110 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 295.75-2 chr1 238728402 238728811 + 1.25 NA Intergenic L1ME3A|LINE|L1 -242589 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 234.5-34 chr5 115356586 115356876 + 1.25 NA Intergenic MER47A|DNA|TcMar-Tigger -60077 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 305.25-17 chr7 118900359 118900760 + 1.25 NA Intergenic Intergenic 675855 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 210.5-49 chr5 22958517 22958685 + 1.25 NA Intergenic Intergenic -105257 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 136.5-3 chr1 43076839 43077110 + 1.25 NA Intergenic Intergenic -70930 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 250.5-5 chr10 57426839 57427064 + 1.25 NA Intergenic MER77B|LTR|ERVL -122392 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 141.5-116 chr8 136240258 136240562 + 1.25 NA Intergenic MIR|SINE|MIR -290388 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 169.5-27 chr15 25601117 25601401 + 1.25 NA Intergenic AluJr|SINE|Alu -162203 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 285.25-21 chr6 156437138 156437568 + 1.25 NA Intergenic Intergenic 58603 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 191.25-28 chr16 73166358 73166576 + 1.25 NA Intergenic Intergenic -22020 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 234.25-26 chr4 131163371 131163606 + 1.25 NA Intergenic Intergenic -601350 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 127.5-50 chr18 28554028 28554295 + 1.25 NA Intergenic Intergenic -377031 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 234-3 chr1 156320257 156320630 + 1.25 NA intron (NM_001008800, intron 5 of 11) intron (NM_001008800, intron 5 of 11) -16871 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding 193-45 chr5 150737930 150738203 + 1.25 NA intron (NM_001135643, intron 4 of 13) L1PB1|LINE|L1 20454 NM_001135644 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 242.75 chr1 203801632 203802005 + 1.25 NA TTS (NM_001174108) TTS (NM_001174108) 4295 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 201-22 chr17 60776067 60776360 + 1.25 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 98362 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 128.75-82 chr7 54256695 54256812 + 1.25 NA Intergenic L1MB5|LINE|L1 -73944 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 165.5-31 chr15 50728035 50728194 + 1.25 NA intron (NM_032802, intron 10 of 14) intron (NM_032802, intron 10 of 14) 37592 NM_032802 84888 Hs.401537 NM_032802 ENSG00000138600 SPPL2A IMP3|PSL2 signal peptide peptidase like 2A protein-coding 184.75-16 chr12 107708033 107708183 + 1.25 NA intron (NM_007062, intron 11 of 14) intron (NM_007062, intron 11 of 14) 22066 NM_001317962 11137 Hs.506652 NM_007062 ENSG00000136045 PWP1 IEF-SSP-9502 PWP1 homolog, endonuclein protein-coding 118.25-12 chr10 114866465 114866610 + 1.25 NA intron (NM_001135051, intron 16 of 16) intron (NM_001135051, intron 16 of 16) 44757 NM_020940 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 134-25 chr14 56489840 56490025 + 1.25 NA Intergenic L2a|LINE|L2 -24399 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 209.75-6 chr11 99126873 99127186 + 1.25 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 106080 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 140-24 chr16 2350854 2351036 + 1.25 NA intron (NR_003574, intron 1 of 16) L1MD|LINE|L1 10023 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 181.5-17 chr14 61038191 61038360 + 1.25 NA intron (NR_033344, intron 8 of 16) (TATAA)n|Simple_repeat|Simple_repeat -56585 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 181.25-12 chr12 81452907 81453080 + 1.25 NA intron (NM_001282536, intron 2 of 29) intron (NM_001282536, intron 2 of 29) 59398 NM_001282536 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 211.5-18 chr15 71245345 71245578 + 1.25 NA intron (NM_024817, intron 4 of 16) MER68|LTR|ERVL -56402 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 121.5-72 chr20 53906391 53906576 + 1.25 NA Intergenic Intergenic -30774 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 219.5-6 chr10 113516252 113516538 + 1.25 NA Intergenic MER46C|DNA|TcMar-Tigger -34436 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 164-14 chr12 69221853 69221994 + 1.25 NA Intergenic Intergenic -17646 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 187.25-61 chr7 90492353 90492548 + 1.25 NA intron (NM_001365443, intron 5 of 6) FRAM|SINE|Alu 22811 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 165.75-51 chr4 82287712 82287924 + 1.25 NA Intergenic Tigger3a|DNA|TcMar-Tigger 86173 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 217.75-29 chr4 33451754 33452025 + 1.25 NA Intergenic L1MEf|LINE|L1 588004 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 185-31 chr3 194508648 194508883 + 1.25 NA Intergenic Intergenic 21625 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 218.25-45 chr8 75419016 75419482 + 1.25 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 11600 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 261.25-2 chr12 51446756 51447189 + 1.25 NA intron (NM_001039960, intron 2 of 24) intron (NM_001039960, intron 2 of 24) 21855 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 235.25-16 chr21 28993410 28993614 + 1.25 NA promoter-TSS (NM_001320766) promoter-TSS (NM_001320766) -635 NM_015565 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 271-22 chr7 12623532 12623902 + 1.25 NA intron (NR_156701, intron 5 of 14) MIR3|SINE|MIR 34194 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 278.25-20 chr6 46743128 46743461 + 1.25 NA Intergenic Intergenic -3623 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 223.5-67 chr6 13861870 13862098 + 1.25 NA Intergenic L1M5|LINE|L1 -47424 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 286-17 chr21 27771680 27772082 + 1.25 NA Intergenic Intergenic 49502 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 166-6 chr10 46554040 46554210 + 1.25 NA intron (NM_014696, intron 2 of 2) MIRb|SINE|MIR 1946 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 214.75-7 chr12 61842376 61842678 + 1.25 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 350312 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 120.25-42 chr20 52816038 52816156 + 1.25 NA Intergenic Intergenic -156261 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 254.25-25 chr7 37819729 37820027 + 1.25 NA Intergenic LTR33|LTR|ERVL -28719 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 155.25-11 chr12 27823849 27824108 + 1.25 NA Intergenic Intergenic 43745 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 319.75-4 chr18 42151494 42151813 + 1.25 NA Intergenic Intergenic -35015 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 164.25-67 chr9 74590662 74590807 + 1.25 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -24800 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 135-16 chr11 4673862 4674029 + 1.25 NA Intergenic Intergenic 23908 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 251-20 chr4 52069050 52069364 + 1.25 NA intron (NM_001297608, intron 4 of 11) intron (NM_001297608, intron 4 of 11) 17903 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 138.75-43 chr22 32978032 32978208 + 1.25 NA intron (NM_003490, intron 3 of 13) L2b|LINE|L2 28701 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 173.75-15 chr14 34621462 34621803 + 1.25 NA intron (NM_001366519, intron 2 of 12) L2c|LINE|L2 8516 NR_159357 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 141.25-6 chr1 218549729 218549898 + 1.25 NA intron (NR_031644, intron 2 of 6) MER34A1|LTR|ERV1 39718 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 257.25-6 chr14 29556140 29556374 + 1.25 NA Intergenic Intergenic 370839 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 174.75-18 chr14 36842288 36842485 + 1.25 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 110005 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 114.25-42 chr17 73363021 73363174 + 1.25 NA intron (NM_001144952, intron 38 of 44) AluSq2|SINE|Alu -51096 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 117.25-72 chr4 179329343 179329535 + 1.25 NA Intergenic Intergenic -1421503 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 136.5-102 chr7 103949658 103949809 + 1.25 NA intron (NM_005045, intron 1 of 64) intron (NM_005045, intron 1 of 64) 39783 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 287.5-21 chr4 9986769 9987153 + 1.25 NA intron (NM_001001290, intron 4 of 12) MIR|SINE|MIR 34536 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 295.75-4 chr11 110703544 110703890 + 1.25 NA intron (NM_001258416, intron 1 of 15) intron (NM_001258416, intron 1 of 15) 8108 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 201.5-14 chr14 48062365 48062634 + 1.25 NA Intergenic L1MCa|LINE|L1 -267485 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 193.75-9 chr11 79686690 79686926 + 1.25 NA Intergenic L2a|LINE|L2 -245778 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 157.5-8 chr1 214833083 214833299 + 1.25 NA Intergenic Intergenic -172351 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 133.75-77 chr8 128066463 128066607 + 1.25 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 17383 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 127.25-70 chr4 93746745 93746863 + 1.25 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -81949 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 224.5-28 chr3 174897063 174897315 + 1.25 NA intron (NM_207015, intron 1 of 13) L1MA1|LINE|L1 37855 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 155.5-18 chr11 68655989 68656200 + 1.25 NA Intergenic MLT1E3|LTR|ERVL-MaLR -28450 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 178.25-22 chr17 66092568 66092738 + 1.25 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 99239 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 249.25-6 chr14 69710010 69710240 + 1.25 NA intron (NM_014734, intron 5 of 5) intron (NM_014734, intron 5 of 5) -57017 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 285.75-25 chr8 126808275 126808525 + 1.25 NA Intergenic L1MA4|LINE|L1 -204754 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 235.75-7 chr11 50477297 50477631 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 68317 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 260.5-16 chr2 14023500 14023753 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 377332 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 293.25-13 chr5 22480539 22480946 + 1.25 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -266892 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 130.25 chr1 15400156 15400387 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -9617 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 156-54 chr5 98504677 98504938 + 1.25 NA Intergenic Intergenic -263825 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 296.5-2 chr1 63422177 63422486 + 1.25 NA intron (NM_013339, intron 12 of 14) (TATATA)n|Simple_repeat|Simple_repeat 54704 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 166.75-47 chr5 44302753 44302990 + 1.25 NA 3' UTR (NM_004465, exon 3 of 3) 3' UTR (NM_004465, exon 3 of 3) -85861 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 149.5-103 chr7 156894933 156895220 + 1.25 NA Intergenic Intergenic -1868 NR_146959 64327 Hs.209989 NM_022458 ENSG00000105983 LMBR1 ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|ZRS limb development membrane protein 1 protein-coding 190-40 chr5 128755427 128755628 + 1.25 NA Intergenic Intergenic -209600 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 136.75 chr1 63426062 63426218 + 1.25 NA intron (NM_013339, intron 12 of 14) L2a|LINE|L2 58513 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 227.5-7 chr1 150203871 150204174 + 1.25 NA Intergenic AluSz|SINE|Alu 30656 NM_001136479 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 159.25-57 chr5 114379225 114379369 + 1.25 NA intron (NM_001278204, intron 2 of 6) intron (NM_001278204, intron 2 of 6) 16978 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 187.5-59 chr5 97423638 97423857 + 1.25 NA Intergenic LTR52|LTR|ERVL -80949 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 171-46 chr5 150701968 150702408 + 1.25 NA Intergenic L1ME1|LINE|L1 -1126 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 188.75-29 chr3 109226833 109227130 + 1.25 NA Intergenic Intergenic 48816 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 187.25-50 chr5 19083492 19083777 + 1.25 NA Intergenic Intergenic 802638 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 127.75-74 chr5 43898861 43898995 + 1.25 NA Intergenic Intergenic -295698 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 231.5-22 chr2 109220438 109220763 + 1.25 NA intron (NM_001099289, intron 1 of 9) L1MB4|LINE|L1 -79012 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 305.5-14 chr5 40773977 40774298 + 1.25 NA intron (NM_001355029, intron 2 of 7) HAL1|LINE|L1 -18176 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 138.75-60 chr5 66368269 66368454 + 1.25 NA Intergenic Intergenic 143243 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 173.5-72 chr3 168134341 168134556 + 1.25 NA Intergenic Intergenic -38524 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 146-50 chr5 155703839 155704070 + 1.25 NA Intergenic MLT1N2|LTR|ERVL-MaLR -622803 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 215.5-32 chr3 76306752 76307061 + 1.25 NA Intergenic L2c|LINE|L2 -521357 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 291.25-15 chr3 23142282 23142580 + 1.25 NA Intergenic Intergenic 60147 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 209.25-34 chr5 130457013 130457295 + 1.25 NA Intergenic Intergenic 552689 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 129-70 chr6 127635946 127636065 + 1.25 NA Intergenic MIR|SINE|MIR 58831 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 181.25-48 chr5 76595840 76596042 + 1.25 NA intron (NM_006633, intron 9 of 35) intron (NM_006633, intron 9 of 35) 13028 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 154.75-7 chr10 130448732 130448958 + 1.25 NA Intergenic L1M3|LINE|L1 312436 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 231.25-2 chr1 194947463 194947980 + 1.25 NA Intergenic Intergenic 1140994 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 276.5-9 chr20 16894848 16895147 + 1.25 NA Intergenic L1PA13|LINE|L1 146644 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 178.75-45 chr4 179691632 179691982 + 1.25 NA Intergenic Intergenic 1467342 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 246.75-32 chr7 41838605 41838832 + 1.25 NA Intergenic L1MC1|LINE|L1 -135628 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 214.5-25 chr2 57732232 57732483 + 1.25 NA Intergenic Intergenic -175294 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 150.75-7 chr11 60522672 60522906 + 1.25 NA intron (NM_001278320, intron 3 of 4) intron (NM_001278320, intron 3 of 4) 7397 NM_001100909 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 242-19 chr16 62485210 62485532 + 1.25 NA Intergenic Intergenic -448933 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 240.25-10 chr2 26384792 26385012 + 1.25 NA intron (NR_137633, intron 7 of 9) MIRc|SINE|MIR -17018 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 122-38 chr2 98003848 98003984 + 1.25 NA Intergenic Intergenic -7968 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 180-36 chr2 74177427 74177650 + 1.25 NA intron (NM_001317112, intron 1 of 4) L1ME4c|LINE|L1 776 NM_001317111 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 227.75-4 chr11 74150933 74151299 + 1.25 NA intron (NM_001286577, intron 3 of 32) AluSx1|SINE|Alu 19886 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 197.75-20 chr2 99480088 99480372 + 1.25 NA intron (NR_135652, intron 1 of 21) AluJb|SINE|Alu 9787 NR_135652 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 194.75-53 chr9 36910139 36910495 + 1.25 NA intron (NR_103999, intron 6 of 8) L1ME4b|LINE|L1 -16786 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 142.5-89 chr7 100134012 100134260 + 1.25 NA Intergenic MER1A|DNA|hAT-Charlie 7169 NM_203397 255374 Hs.632319 NM_203397 ENSG00000214309 MBLAC1 - metallo-beta-lactamase domain containing 1 protein-coding 186.25 chr1 119208680 119208925 + 1.25 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -68130 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 249.5-28 chr7 28666934 28667417 + 1.25 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -18958 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 266.75-6 chr4 92756259 92756589 + 1.25 NA intron (NM_001286838, intron 2 of 14) L1MA4A|LINE|L1 452025 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 184.75-43 chr4 45086746 45087035 + 1.25 NA Intergenic Intergenic -360256 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 218-18 chr16 74155153 74155612 + 1.25 NA Intergenic Intergenic 60139 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 346.75-7 chr7 79808069 79808379 + 1.25 NA Intergenic L2a|LINE|L2 -326607 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 172.25-6 chr10 63702631 63702971 + 1.25 NA Intergenic Intergenic -180911 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 190.5-51 chr4 40458921 40459186 + 1.25 NA intron (NM_001098634, intron 3 of 6) intron (NM_001098634, intron 3 of 6) 43066 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 138-38 chr2 102444328 102444496 + 1.25 NA intron (NM_003853, intron 8 of 11) MIRb|SINE|MIR 12123 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 153-2 chr1 187536144 187536328 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 92608 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 208.25-27 chr4 79995011 79995356 + 1.25 NA intron (NM_001286781, intron 12 of 16) intron (NM_001286781, intron 12 of 16) 78046 NM_001286781 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 193.5-23 chr16 9309026 9309218 + 1.25 NA Intergenic Intergenic -46466 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 166.5-70 chr4 36272473 36272626 + 1.25 NA intron (NR_122080, intron 2 of 2) intron (NR_122080, intron 2 of 2) -9067 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 181.5-43 chr22 42395354 42395557 + 1.25 NA intron (NM_145912, intron 4 of 5) AluSq2|SINE|Alu -26247 NR_120596 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 C22orf32-1|lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 155.25-18 chr14 39842679 39842824 + 1.25 NA Intergenic Intergenic -410251 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 211.75-36 chr7 28253629 28253945 + 1.25 NA Intergenic L1ME3E|LINE|L1 -45534 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 137-72 chr9 3659786 3660069 + 1.25 NA Intergenic L1MA4A|LINE|L1 -8159 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 166-36 chr21 31239981 31240144 + 1.25 NA intron (NM_001353686, intron 6 of 27) L1ME3A|LINE|L1 -79122 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 122.25-104 chrX 41097530 41097696 + 1.25 NA intron (NM_001039591, intron 1 of 44) Charlie1b|DNA|hAT-Charlie 12168 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 163-19 chr18 467699 467918 + 1.25 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 32893 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 248-22 chr8 102823816 102824108 + 1.25 NA Intergenic Intergenic 17140 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 229.5-42 chr5 111748267 111748525 + 1.25 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 7855 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 132-59 chr5 19699110 19699274 + 1.25 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 187080 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 182-17 chr15 61407910 61408143 + 1.25 NA Intergenic HAL1ME|LINE|L1 -178724 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 222.75-36 chr5 26000861 26001111 + 1.25 NA Intergenic Intergenic 810033 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 188-45 chr8 115894186 115894412 + 1.25 NA Intergenic L2a|LINE|L2 -225324 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 157.75-72 chr7 81981727 81981919 + 1.25 NA intron (NM_000722, intron 24 of 38) intron (NM_000722, intron 24 of 38) -27354 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 160.25-20 chr14 70326225 70326355 + 1.25 NA 3' UTR (NM_001202547, exon 6 of 6) 3' UTR (NM_001202547, exon 6 of 6) 33393 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 180-28 chr17 51791823 51791990 + 1.25 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 356479 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 248.25-5 chr12 32476447 32476812 + 1.25 NA intron (NM_001370298, intron 1 of 16) 7SLRNA|srpRNA|srpRNA -9343 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 211-6 chr10 46067521 46067762 + 1.25 NA Intergenic L1MB8|LINE|L1 -21372 NM_138634 4477 Hs.255462 NM_002443 ENSG00000263639 MSMB HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 microseminoprotein beta protein-coding 270.75-13 chr3 33738862 33739190 + 1.25 NA Intergenic AluSx1|SINE|Alu -20772 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 326-3 chr1 75455968 75456376 + 1.25 NA intron (NM_001320285, intron 2 of 25) L1PA16|LINE|L1 154942 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 178.75-58 chr8 47809305 47809605 + 1.25 NA intron (NM_001081640, intron 68 of 84) intron (NM_001081640, intron 68 of 84) -71291 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 214-4 chr10 36518478 36518728 + 1.25 NA Intergenic MLT2B3|LTR|ERVL -607254 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 171.5-78 chr6 81316136 81316539 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 436344 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 196.5-35 chr17 52144109 52144369 + 1.25 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 14475 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 153.75-80 chr7 104919874 104920047 + 1.25 NA intron (NR_027374, intron 2 of 3) MIR|SINE|MIR 6685 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 176-45 chr8 138399892 138400157 + 1.25 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 97237 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 179.5-34 chr14 69703470 69703670 + 1.25 NA exon (NM_014734, exon 3 of 6) exon (NM_014734, exon 3 of 6) -63572 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 196.25-26 chr17 70990437 70990670 + 1.25 NA Intergenic L1PB|LINE|L1 211626 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 276.25-9 chr4 54503326 54503686 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR 103625 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 203.25-31 chr3 45739184 45739432 + 1.25 NA intron (NM_001319071, intron 18 of 19) intron (NM_001319071, intron 18 of 19) 49912 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 154.25-42 chr20 4983130 4983342 + 1.25 NA intron (NM_203327, intron 1 of 16) L1MB7|LINE|L1 18274 NM_005116 9962 Hs.516866 NM_005116 ENSG00000089057 SLC23A2 NBTL1|SLC23A1|SVCT2|YSPL2 solute carrier family 23 member 2 protein-coding 214.25-44 chr8 119803293 119803681 + 1.25 NA intron (NM_003184, intron 5 of 25) AluSz|SINE|Alu 29354 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 202.5-29 chr3 49294567 49294817 + 1.25 NA intron (NM_199443, intron 12 of 20) intron (NM_199443, intron 12 of 20) -17460 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 206.75-24 chr5 11289735 11290054 + 1.25 NA intron (NM_001288715, intron 8 of 20) MLT1K|LTR|ERVL-MaLR 299023 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 152.5-46 chr18 10208855 10208982 + 1.25 NA Intergenic Intergenic 205452 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 163.75-47 chr4 35686518 35686774 + 1.25 NA Intergenic Intergenic 557293 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 198.5-30 chr21 23126626 23126926 + 1.25 NA Intergenic MSTC|LTR|ERVL-MaLR 47492 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 154-19 chr14 50453052 50453342 + 1.25 NA intron (NM_198794, intron 14 of 31) MER110-int|LTR|ERV1 -55899 NM_001282236 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 121-25 chr16 7400032 7400263 + 1.25 NA intron (NM_145893, intron 1 of 13) MIRb|SINE|MIR 67302 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 174.75-14 chr12 113488089 113488336 + 1.25 NA Intergenic Intergenic 16209 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 170.75-65 chr6 154298436 154298625 + 1.25 NA intron (NM_015553, intron 1 of 11) intron (NM_015553, intron 1 of 11) 31551 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 214.5-61 chr9 30716480 30716874 + 1.25 NA Intergenic Intergenic -308223 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 184.5-36 chr18 51204078 51204255 + 1.25 NA Intergenic L2c|LINE|L2 -6485 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 130.25-2 chr1 41464203 41464328 + 1.25 NA Intergenic Intergenic 20418 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 367.5-5 chr8 81703791 81704188 + 1.25 NA intron (NR_033194, intron 5 of 6) MLT1K|LTR|ERVL-MaLR -8931 NM_001010893 347051 Hs.683849 NM_001010893 ENSG00000253598 SLC10A5 P5 solute carrier family 10 member 5 protein-coding 212.5-42 chr4 88491143 88491466 + 1.25 NA intron (NM_016323, intron 16 of 22) L2|LINE|L2 32472 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 297.75-6 chr14 75721598 75721914 + 1.25 NA intron (NM_015072, intron 12 of 31) MIR|SINE|MIR 60510 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 236.75 chr1 49182306 49182722 + 1.25 NA intron (NM_001323575, intron 4 of 12) MIRc|SINE|MIR -74897 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 286.25-12 chr3 136399555 136399929 + 1.25 NA intron (NM_005862, intron 21 of 33) Charlie1a|DNA|hAT-Charlie 149402 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 166.5-68 chr3 185275445 185275628 + 1.25 NA Intergenic L1MB7|LINE|L1 -7405 NR_038322 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 261-7 chr11 122023033 122023300 + 1.25 NA Intergenic Intergenic 76678 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 184.75-27 chr18 61848472 61848626 + 1.25 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 44458 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 185.25-24 chr19 40496664 40496931 + 1.25 NA intron (NM_020971, intron 6 of 35) AluSz|SINE|Alu 29796 NM_020971 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 178.75-34 chr20 43804637 43804821 + 1.25 NA Intergenic L1MB7|LINE|L1 -77727 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 245.75-4 chr11 13527048 13527402 + 1.25 NA Intergenic L2c|LINE|L2 -31050 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 164.25-30 chr2 83501488 83501751 + 1.25 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -21195 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 227.25-25 chr3 94962255 94962514 + 1.25 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 24121 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 185.25-22 chr18 55585622 55585839 + 1.25 NA intron (NM_001369576, intron 1 of 18) intron (NM_001369576, intron 1 of 18) 389 NM_001348217 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 116-80 chrX 86563928 86564080 + 1.25 NA intron (NM_001139515, intron 3 of 11) intron (NM_001139515, intron 3 of 11) 301036 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 138.5-42 chr16 82233984 82234135 + 1.25 NA Intergenic Tigger8|DNA|TcMar-Tigger -63835 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 195.75-21 chr18 10380086 10380376 + 1.25 NA Intergenic Intergenic 34139 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 135.75-75 chr5 88248280 88248445 + 1.25 NA intron (NM_001349407, intron 1 of 14) HERV35I-int|LTR|ERV1 20483 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 196.75-17 chr2 114147029 114147255 + 1.25 NA Intergenic Tigger16b|DNA|TcMar-Tigger -167158 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 163.25-71 chr8 115934008 115934264 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -265161 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 131.5-47 chr2 194816559 194816774 + 1.25 NA Intergenic MIRb|SINE|MIR 86071 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 330.5-14 chr9 8405659 8406097 + 1.25 NA intron (NM_130392, intron 20 of 30) intron (NM_130392, intron 20 of 30) 328068 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 132.75-18 chr10 36655569 36655722 + 1.25 NA Intergenic L1M3|LINE|L1 -470212 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 167.75-66 chr7 134218996 134219166 + 1.25 NA intron (NM_144648, intron 15 of 19) intron (NM_144648, intron 15 of 19) 91741 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 137.5-20 chr11 78494730 78495039 + 1.25 NA intron (NM_024678, intron 6 of 13) L2c|LINE|L2 -38292 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 241-13 chr15 53196762 53197043 + 1.25 NA Intergenic Intergenic 80537 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 159-68 chr9 38683065 38683278 + 1.25 NA Intergenic Intergenic 62083 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 242.75-7 chr14 57350111 57350316 + 1.25 NA Intergenic Intergenic -40373 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 186.5-28 chr2 19108331 19108581 + 1.25 NA Intergenic AluSz6|SINE|Alu -81485 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 194.5-60 chr5 73305233 73305419 + 1.25 NA Intergenic MIR3|SINE|MIR -32580 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 176.75-7 chr11 73988347 73988625 + 1.25 NA Intergenic Intergenic -5642 NM_003355 7351 Hs.80658 NM_003355 ENSG00000175567 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 protein-coding 290.75-11 chr8 26620501 26620951 + 1.25 NA intron (NM_001244604, intron 3 of 13) intron (NM_001244604, intron 3 of 13) 42321 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 232-17 chr3 169951106 169951359 + 1.25 NA intron (NR_027622, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 15502 NR_027622 100128164 Hs.633070 NR_024409 ENSG00000239219 LOC100128164 - four and a half LIM domains 1 pseudogene pseudo 175.75-40 chr5 18236092 18236368 + 1.25 NA Intergenic Intergenic 428956 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 188.5-5 chr10 77437885 77438142 + 1.25 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 87141 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 170.25-26 chr16 53448743 53448879 + 1.25 NA intron (NM_001323608, intron 4 of 22) intron (NM_001323608, intron 4 of 22) 13192 NM_001323611 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 235.5-6 chr1 210731626 210731849 + 1.25 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 401637 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 260.5-15 chr18 71824364 71824691 + 1.25 NA Intergenic Intergenic -42301 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 147.25-47 chr4 58766679 58766811 + 1.25 NA Intergenic L1MCb|LINE|L1 -217537 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 160.25-26 chr17 67093145 67093317 + 1.25 NA intron (NM_001330447, intron 31 of 32) HAL1|LINE|L1 48677 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 227.25-13 chr13 52678114 52678455 + 1.25 NA intron (NM_001130912, intron 12 of 13) intron (NM_001130912, intron 12 of 13) 25448 NM_001320831 10910 Hs.281902 NM_006704 ENSG00000165416 SUGT1 SGT1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone protein-coding 137.75-6 chr10 37330459 37330570 + 1.25 NA intron (NR_104061, intron 3 of 4) L1PB2|LINE|L1 21328 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 236.25-8 chr13 60597927 60598271 + 1.25 NA Intergenic L1PREC2|LINE|L1 -74856 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 186.75-34 chr3 16145566 16145779 + 1.25 NA Intergenic Intergenic -29008 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 318.75-2 chr1 96466575 96466989 + 1.25 NA Intergenic Intergenic -92657 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 217.25-5 chr10 83800178 83800674 + 1.25 NA Intergenic L1MA4|LINE|L1 -123337 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 126.5-35 chr14 51471726 51471871 + 1.25 NA intron (NR_051990, intron 2 of 2) HAL1ME|LINE|L1 -17330 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 164.75-7 chr1 241799338 241799518 + 1.25 NA intron (NM_001367482, intron 27 of 27) intron (NM_001367482, intron 27 of 27) -48763 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 151.75-64 chr5 8602852 8603062 + 1.25 NA Intergenic L2c|LINE|L2 142032 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 121.5-114 chr9 114322041 114322234 + 1.25 NA promoter-TSS (NM_000607) promoter-TSS (NM_000607) -886 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 123.25-6 chr1 195697132 195697234 + 1.25 NA Intergenic MIR|SINE|MIR 391532 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 210.25-47 chr8 36495305 36495557 + 1.25 NA Intergenic Intergenic -288943 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 221-10 chr10 122338133 122338460 + 1.25 NA TTS (NM_144587) TTS (NM_144587) -36412 NM_001001974 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 165-10 chr11 18483611 18483873 + 1.25 NA intron (NM_006292, intron 8 of 9) intron (NM_006292, intron 8 of 9) 27886 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 261.25-8 chr4 148283562 148283869 + 1.25 NA intron (NM_000901, intron 2 of 8) intron (NM_000901, intron 2 of 8) 158699 NM_001166104 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 295.25-11 chr4 30407422 30407934 + 1.25 NA Intergenic L1M2|LINE|L1 -312691 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 183.25-54 chr8 64586798 64586998 + 1.25 NA 3' UTR (NM_001324112, exon 7 of 7) 3' UTR (NM_001324112, exon 7 of 7) -5006 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 241-32 chr7 43378146 43378347 + 1.25 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 144296 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 161.5-55 chr3 69463929 69464169 + 1.25 NA Intergenic Intergenic -77961 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 206.5-36 chr3 58002394 58002745 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie -5853 NM_001164318 2317 Hs.476448 NM_001457 ENSG00000136068 FLNB ABP-278|ABP-280|AOI|FH1|FLN-B|FLN1L|LRS1|SCT|TABP|TAP filamin B protein-coding 272-4 chr11 12548588 12548966 + 1.25 NA Intergenic MIRb|SINE|MIR -125644 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 152-50 chr4 167950987 167951168 + 1.25 NA Intergenic L1MEd|LINE|L1 -141460 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 260.25-5 chr15 92015108 92015435 + 1.25 NA intron (NR_135775, intron 2 of 10) THE1D|LTR|ERVL-MaLR 160967 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 253.75-23 chr8 133332850 133333274 + 1.25 NA Intergenic Intergenic -35758 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 223-38 chr8 70793352 70793647 + 1.25 NA Intergenic MSTC|LTR|ERVL-MaLR 124160 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 190.75-17 chr14 19992502 19992958 + 1.25 NA Intergenic L1PA17|LINE|L1 -9332 NM_001348271 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 182.5-21 chr15 61338105 61338319 + 1.25 NA Intergenic Intergenic -108910 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 117-9 chr10 36265912 36266100 + 1.25 NA Intergenic Intergenic 487704 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 147.75-48 chr3 70198229 70198471 + 1.25 NA intron (NM_001364677, intron 3 of 3) intron (NM_001364677, intron 3 of 3) 114288 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 150.75-40 chr20 13419763 13419949 + 1.25 NA intron (NM_017714, intron 12 of 13) intron (NM_017714, intron 12 of 13) -180169 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 356.75 chr1 195455783 195456241 + 1.25 NA Intergenic L1MA4A|LINE|L1 632703 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 140.25-65 chr4 61114563 61114682 + 1.25 NA Intergenic MamRep564|Unknown|Unknown -29034 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 185.75-47 chr4 106825184 106825385 + 1.25 NA Intergenic L1MEd|LINE|L1 211029 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 263.75-14 chr5 84880673 84881021 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -495967 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 114-15 chr10 106127030 106127157 + 1.25 NA Intergenic Intergenic -13072 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 242-11 chr13 70895666 70895984 + 1.25 NA Intergenic L2a|LINE|L2 -119316 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 164.25-49 chr5 109525822 109526014 + 1.25 NA Intergenic Intergenic -115944 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 259.5-10 chr13 55238261 55238621 + 1.25 NA Intergenic L2|LINE|L2 63987 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 183.75-40 chr3 95774312 95774502 + 1.25 NA Intergenic Intergenic -91214 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 149-40 chr3 183945408 183945660 + 1.25 NA intron (NM_001320032, intron 24 of 29) intron (NM_001320032, intron 24 of 29) 58734 NR_039650 100616127 NR_039650 ENSG00000263932 MIR4448 - microRNA 4448 ncRNA 217.5-5 chr1 232653186 232653436 + 1.25 NA Intergenic Intergenic -64760 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 162-18 chr18 61942132 61942313 + 1.25 NA Intergenic LTR37-int|LTR|ERV1 -49215 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 143.75-83 chr8 29482346 29482494 + 1.25 NA Intergenic HAL1|LINE|L1 -131736 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 150.75-49 chr3 117187357 117187571 + 1.25 NA Intergenic L1PA15|LINE|L1 266033 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 127.75-15 chr10 124028691 124028829 + 1.25 NA intron (NM_014863, intron 5 of 5) intron (NM_014863, intron 5 of 5) 63646 NM_014863 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 132-46 chr21 31537771 31538008 + 1.25 NA intron (NM_003253, intron 1 of 28) L1ME4b|LINE|L1 21198 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 156-22 chr12 9235979 9236176 + 1.25 NA Intergenic Intergenic -1870 NR_040112 3 Hs.569125 NR_040112 ENSG00000256069 A2MP1 A2MP alpha-2-macroglobulin pseudogene 1 pseudo 260.25-8 chr19 34650531 34650917 + 1.25 NA intron (NR_027620, intron 1 of 3) L1MA5|LINE|L1 4851 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 237.25-11 chr12 49634808 49635028 + 1.25 NA intron (NM_001031698, intron 12 of 25) intron (NM_001031698, intron 12 of 25) 4374 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 240.5 chr1 42332192 42332506 + 1.25 NA intron (NM_001198851, intron 1 of 14) intron (NM_001198851, intron 1 of 14) 2606 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 176.5-84 chr8 82947014 82947351 + 1.25 NA intron (NR_134295, intron 2 of 3) L1MC4|LINE|L1 35078 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 205.25-6 chr10 119743815 119744033 + 1.25 NA intron (NM_014937, intron 1 of 19) intron (NM_014937, intron 1 of 19) 17874 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 197-39 chr4 59838433 59838722 + 1.25 NA Intergenic LTR104_Mam|LTR|Gypsy 825004 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 196.75 chr1 57577917 57578111 + 1.25 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -153093 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 224.75-15 chr3 8267676 8267936 + 1.25 NA intron (NR_033378, intron 3 of 3) MIRb|SINE|MIR 233852 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 274.75-15 chr3 187036967 187037234 + 1.25 NA intron (NM_003032, intron 1 of 6) L1M5|LINE|L1 -1618 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 204.75-19 chr17 58234451 58234705 + 1.25 NA Intergenic Intergenic -3848 NM_001160102 4025 Hs.234742 NM_006151 ENSG00000167419 LPO SPO lactoperoxidase protein-coding 202.75-35 chr8 124942131 124942490 + 1.25 NA non-coding (NR_027321, exon 1 of 4) non-coding (NR_027321, exon 1 of 4) 302 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 154-12 chr11 79793971 79794149 + 1.25 NA Intergenic MIR|SINE|MIR -353030 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 166.5-16 chr10 39353309 39353558 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 656837 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 181.75-23 chr3 35026313 35026484 + 1.25 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 367625 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 206.75-17 chr2 67781579 67781784 + 1.25 NA Intergenic AluJr|SINE|Alu 43881 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 173-7 chr10 100840628 100840773 + 1.25 NA Intergenic L1MC5|LINE|L1 -72263 NM_001136123 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 309-2 chr10 30607842 30608392 + 1.25 NA Intergenic AluJb|SINE|Alu 21636 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 138.5-50 chr18 7750102 7750328 + 1.25 NA intron (NM_002845, intron 1 of 30) (GTTTAA)n|Simple_repeat|Simple_repeat 182899 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 209-4 chr11 47487480 47487717 + 1.25 NA intron (NM_198700, intron 2 of 13) intron (NM_198700, intron 2 of 13) 1426 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 260.25-16 chr3 85888369 85888649 + 1.25 NA intron (NM_001256502, intron 5 of 10) intron (NM_001256502, intron 5 of 10) -60459 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 130-47 chr3 42317844 42318014 + 1.25 NA Intergenic MER65-int|LTR|ERV1 -51744 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 294.25-10 chr4 26414889 26415277 + 1.25 NA intron (NM_203284, intron 4 of 11) intron (NM_203284, intron 4 of 11) 75401 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 242.25-5 chr14 31415656 31416075 + 1.25 NA intron (NM_015473, intron 1 of 35) intron (NM_015473, intron 1 of 35) 4685 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 113.25-27 chr12 29293691 29293831 + 1.25 NA intron (NR_103860, intron 3 of 6) L1ME4a|LINE|L1 24087 NR_103860 100506606 Hs.298851 NR_103860 ENSG00000257176 LOC100506606 - uncharacterized LOC100506606 ncRNA 116.75-46 chr2 151732285 151732394 + 1.25 NA intron (NM_001271208, intron 3 of 182) intron (NM_001271208, intron 3 of 182) 2137 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 243-9 chr16 79158499 79158754 + 1.25 NA intron (NM_001291997, intron 7 of 7) L2b|LINE|L2 442111 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 220.75-18 chr2 207607372 207607687 + 1.25 NA intron (NM_001330133, intron 3 of 3) intron (NM_001330133, intron 3 of 3) 17459 NM_001330136 151194 Hs.664764 NM_145280 ENSG00000144401 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 229.25-14 chr2 221547917 221548141 + 1.25 NA intron (NM_001363748, intron 3 of 17) MSTB|LTR|ERVL-MaLR 24275 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 141.5-121 chrX 81489477 81489671 + 1.25 NA Intergenic L1MB4|LINE|L1 287472 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 137.5-103 chr7 8020373 8020490 + 1.25 NA intron (NM_138426, intron 2 of 7) intron (NM_138426, intron 2 of 7) 51635 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 287-21 chr8 60101800 60102220 + 1.25 NA Intergenic Intergenic 179390 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 155.25-72 chr8 130576059 130576289 + 1.25 NA Intergenic L2b|LINE|L2 -132500 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 137-35 chr2 17305156 17305295 + 1.25 NA Intergenic Intergenic 213215 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 245-34 chr6 152383802 152384082 + 1.25 NA intron (NM_182961, intron 55 of 145) L2|LINE|L2 3412 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 134.25-34 chr19 36238129 36238307 + 1.25 NA 3' UTR (NM_007145, exon 4 of 4) 3' UTR (NM_007145, exon 4 of 4) 7710 NM_001366188 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 217.25-17 chr2 81292296 81292593 + 1.25 NA Intergenic L1MEi|LINE|L1 174502 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 204.75-13 chr14 64052277 64052651 + 1.25 NA exon (NM_182914, exon 48 of 116) exon (NM_182914, exon 48 of 116) 42661 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 113.75-38 chr14 63709024 63709167 + 1.25 NA intron (NM_030791, intron 1 of 2).2 AluSq2|SINE|Alu 18970 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 223.5-53 chr3 193565228 193565540 + 1.25 NA Intergenic Intergenic -10489 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 184.75-38 chr20 60921333 60921589 + 1.25 NA Intergenic Intergenic -157603 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 301.5-6 chr13 104631198 104631461 + 1.25 NA Intergenic Intergenic -834538 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 165-45 chr6 35066818 35067066 + 1.25 NA intron (NM_015245, intron 13 of 23) intron (NM_015245, intron 13 of 23) 74397 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 135.5-80 chr4 147290927 147291099 + 1.25 NA Intergenic Intergenic 53704 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 208.75-29 chr8 117706620 117706886 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR 186040 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 226.25-31 chr5 117316610 117317003 + 1.25 NA Intergenic Intergenic -98706 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 187.25-58 chr6 54579708 54579934 + 1.25 NA Intergenic L1ME2|LINE|L1 -266950 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 145.25-15 chr10 111010792 111010987 + 1.25 NA intron (NM_007373, intron 8 of 8) intron (NM_007373, intron 8 of 8) 21963 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 138-79 chr8 74246506 74246708 + 1.25 NA intron (NM_020647, intron 3 of 5) intron (NM_020647, intron 3 of 5) 74754 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 181.75-22 chr3 17394881 17395087 + 1.25 NA intron (NM_014744, intron 8 of 21) intron (NM_014744, intron 8 of 21) 305036 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 182.75-59 chr8 133774550 133774783 + 1.25 NA TTS (NR_125422) TTS (NR_125422) 2686 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 183.25-34 chr4 6545474 6545657 + 1.25 NA intron (NM_001206994, intron 1 of 9) MIR3|SINE|MIR 10050 NM_001206995 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 255.5-20 chr3 70944905 70945336 + 1.25 NA Intergenic L2a|LINE|L2 119804 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 299.5-8 chr3 74328264 74328763 + 1.25 NA intron (NM_020872, intron 12 of 21) intron (NM_020872, intron 12 of 21) 192627 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 142-60 chr6 17482635 17482793 + 1.25 NA intron (NM_001363533, intron 4 of 9) MLT1C|LTR|ERVL-MaLR 28551 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 158.75-24 chr16 82609158 82609316 + 1.25 NA Intergenic Intergenic -17732 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 142.25-32 chr19 31146366 31146568 + 1.25 NA Intergenic Intergenic -21043 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 256.5-10 chr12 46110524 46110763 + 1.25 NA Intergenic L1PBa|LINE|L1 -120069 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 203.5-33 chr4 6962326 6962555 + 1.25 NA intron (NM_001330638, intron 1 of 12) intron (NM_001330638, intron 1 of 12) 8274 NM_001330638 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 277.75-9 chr18 44662638 44663029 + 1.25 NA Intergenic Intergenic -17240 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 167-14 chr15 89291022 89291271 + 1.25 NA intron (NM_001113378, intron 19 of 37) MIR|SINE|MIR 35664 NR_106824 102466983 NR_106824 ENSG00000275101 MIR6766 hsa-mir-6766 microRNA 6766 ncRNA 247.5-34 chr7 28429847 28430332 + 1.25 NA intron (NM_182898, intron 1 of 10) intron (NM_182898, intron 1 of 10) -5526 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 226.75-13 chr2 78824348 78824588 + 1.25 NA Intergenic Intergenic -201234 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 118.75-75 chr4 20935479 20935636 + 1.25 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 48452 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 194-43 chr8 124344774 124345063 + 1.25 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 27781 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 135-71 chr7 79371620 79371791 + 1.25 NA intron (NM_001301128, intron 1 of 20) Tigger3a|DNA|TcMar-Tigger -81252 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 188.25-20 chr18 64561502 64561788 + 1.25 NA Intergenic Intergenic -301590 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 132.5-76 chr3 94478330 94478447 + 1.25 NA Intergenic Intergenic 415327 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 207.75-15 chr16 53899929 53900215 + 1.25 NA intron (NM_001363903, intron 7 of 7) intron (NM_001363903, intron 7 of 7) -139321 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 201.25-13 chr15 69371144 69371420 + 1.25 NA intron (NM_001104554, intron 3 of 8) Zaphod|DNA|hAT-Tip100 -43067 NM_004856 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 278.75-3 chr12 18283513 18283839 + 1.25 NA intron (NM_001288774, intron 2 of 32) intron (NM_001288774, intron 2 of 32) 22136 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 170.25-22 chr14 69958489 69958709 + 1.25 NA intron (NM_001034852, intron 3 of 11) L1M5|LINE|L1 -19534 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 220.25-12 chr11 76397766 76398013 + 1.25 NA intron (NM_001347884, intron 1 of 1) AluSx|SINE|Alu 16566 NM_001305225 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 147-22 chr12 118041106 118041257 + 1.25 NA intron (NM_001278558, intron 2 of 6) MLT1A0|LTR|ERVL-MaLR 20030 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 285.75-4 chr10 76917265 76917595 + 1.25 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 29386 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 235.5-60 chr9 100459868 100460103 + 1.25 NA intron (NM_001198812, intron 1 of 9) MIRb|SINE|MIR -13164 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 267.5-25 chr5 83393179 83393675 + 1.25 NA Intergenic L1MD3|LINE|L1 -78247 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 201-49 chr7 94619903 94620235 + 1.25 NA intron (NM_001346717, intron 4 of 9) intron (NM_001346717, intron 4 of 9) 36064 NM_001362807 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 211.5-52 chr7 41541098 41541451 + 1.25 NA Intergenic Intergenic -152645 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 203.5-28 chr22 28149888 28150195 + 1.25 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -229429 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 265.25-15 chr16 50498895 50499284 + 1.25 NA Intergenic Intergenic -49307 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 164.75-52 chr4 99641969 99642138 + 1.25 NA intron (NM_001354435, intron 1 of 1) intron (NM_001354435, intron 1 of 1) 12626 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 117.75-2 chr1 52739475 52739614 + 1.25 NA intron (NM_024646, intron 1 of 13) intron (NM_024646, intron 1 of 13) 13091 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 203-5 chr10 41859065 41859338 + 1.25 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508844 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 267.75-17 chr7 54139076 54139603 + 1.25 NA Intergenic L1ME3A|LINE|L1 -191358 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 190.5-56 chr4 67053634 67053957 + 1.25 NA Intergenic Intergenic 368205 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 161.25-33 chr2 3624394 3624659 + 1.25 NA intron (NM_001255988, intron 2 of 4) L1MA9|LINE|L1 18474 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 191-35 chr3 141918412 141918622 + 1.25 NA intron (NM_001679, intron 5 of 6) AluSc8|SINE|Alu 41874 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 130.25-73 chr5 44824444 44824616 + 1.25 NA Intergenic L1PA4|LINE|L1 15583 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 122.75-12 chr10 84221672 84221861 + 1.25 NA 3' UTR (NM_001284223, exon 4 of 4) 3' UTR (NM_001284223, exon 4 of 4) 3778 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 140-48 chr5 4199417 4199636 + 1.25 NA Intergenic Intergenic -573955 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 283-13 chr5 51829161 51829454 + 1.25 NA Intergenic L2c|LINE|L2 -178724 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 144.75-26 chr14 54835009 54835222 + 1.25 NA Intergenic L4_A_Mam|LINE|RTE-X 43078 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 220.75-17 chr2 145466313 145466567 + 1.25 NA Intergenic Intergenic 798473 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 250-20 chr3 100345935 100346228 + 1.25 NA intron (NM_020202, intron 5 of 9) intron (NM_020202, intron 5 of 9) 11324 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 160.5-56 chr4 53733519 53733696 + 1.25 NA non-coding (NR_125918, exon 3 of 3) non-coding (NR_125918, exon 3 of 3) 37706 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 225-8 chr11 41698395 41698741 + 1.25 NA Intergenic AluSz6|SINE|Alu -16000 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 238.5-19 chr20 48083988 48084287 + 1.25 NA Intergenic L1ME1|LINE|L1 -94020 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 130-22 chr15 59083657 59083963 + 1.25 NA intron (NM_001270529, intron 8 of 13) intron (NM_001270529, intron 8 of 13) -21336 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 168.5-39 chr2 25607222 25607455 + 1.25 NA intron (NM_033147, intron 4 of 19) intron (NM_033147, intron 4 of 19) 42884 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 319.5-19 chr9 10969327 10969842 + 1.25 NA Intergenic Intergenic 356378 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 205.25-46 chr8 116075505 116075790 + 1.25 NA intron (NR_046215, intron 7 of 13) L1ME2z|LINE|L1 249412 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 206.25-6 chr10 111495300 111495539 + 1.25 NA Intergenic MER94|DNA|hAT-Blackjack 381128 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 213.25-32 chr5 17996260 17996545 + 1.25 NA Intergenic Intergenic 189128 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 184.75-40 chr3 84847662 84847880 + 1.25 NA intron (NR_033860, intron 8 of 20) A-rich|Low_complexity|Low_complexity 21804 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 214.75-11 chr14 73829712 73829999 + 1.25 NA intron (NR_135238, intron 1 of 1) intron (NR_135238, intron 1 of 1) 280 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 181-38 chr4 23074871 23075064 + 1.25 NA Intergenic Intergenic 360878 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 115.5-19 chr11 104074841 104074978 + 1.25 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 38269 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 143.75-72 chr6 48249794 48249925 + 1.25 NA Intergenic Intergenic -181170 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 177.75-19 chr18 6471561 6471756 + 1.25 NA Intergenic L2|LINE|L2 -39758 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 119.75-45 chr2 82278135 82278293 + 1.25 NA Intergenic L1PREC2|LINE|L1 -578589 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 208-18 chr2 142424607 142424818 + 1.25 NA Intergenic Intergenic -293011 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 234.75-2 chr1 168816916 168817129 + 1.25 NA Intergenic Intergenic 30081 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 187.5-84 chr8 75217486 75217642 + 1.25 NA Intergenic Intergenic 60917 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 248.5-35 chr8 81514249 81514590 + 1.25 NA Intergenic Intergenic 16971 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 329.5 chr10 58364932 58365423 + 1.25 NA intron (NM_003338, intron 5 of 6) intron (NM_003338, intron 5 of 6) -19966 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 282.75-6 chr14 38882713 38883074 + 1.25 NA intron (NR_135256, intron 1 of 3) intron (NR_135256, intron 1 of 3) 297 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 228.25-7 chr10 57312326 57312690 + 1.25 NA Intergenic Intergenic -7949 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 260.25-11 chr2 172559381 172559737 + 1.25 NA intron (NM_002610, intron 2 of 10) AluSx1|SINE|Alu 3469 NM_001278549 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 322.25-12 chr20 31723236 31723537 + 1.25 NA promoter-TSS (NM_001191) promoter-TSS (NM_001191) -518 NM_001191 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 119-48 chr21 27287638 27287786 + 1.25 NA Intergenic Intergenic -320624 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 149.5-21 chr12 18388843 18388999 + 1.25 NA intron (NM_001288774, intron 14 of 32) intron (NM_001288774, intron 14 of 32) 127381 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 216.75-18 chr17 15323967 15324302 + 1.25 NA intron (NM_031898, intron 4 of 8) L1MB8|LINE|L1 17463 NM_031898 64518 Hs.414648 NM_031898 ENSG00000125409 TEKT3 - tektin 3 protein-coding 166.75-2 chr1 171107081 171107292 + 1.25 NA intron (NM_001002294, intron 3 of 8) MER5A1|DNA|hAT-Charlie -5380 NR_031627 100302178 NR_031627 ENSG00000221390 MIR1295A MIR1295|MIRN1295|hsa-mir-1295|hsa-mir-1295a|mir-1295a microRNA 1295a ncRNA 238.25-3 chr10 83904380 83904699 + 1.25 NA Intergenic L1MD2|LINE|L1 -227450 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 143.75-7 chr1 244820914 244821086 + 1.25 NA Intergenic MER41-int|LTR|ERV1 -14306 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 275.25-20 chr8 89134901 89135378 + 1.25 NA Intergenic L1MD|LINE|L1 622572 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 353.75 chr10 118335995 118336394 + 1.25 NA exon (NM_001134672, exon 2 of 8) exon (NM_001134672, exon 2 of 8) 6130 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 393.25-2 chr18 12103989 12104479 + 1.25 NA intron (NM_001277333, intron 7 of 13) intron (NM_001277333, intron 7 of 13) 10391 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 122.75-61 chr4 135489419 135489655 + 1.25 NA Intergenic Intergenic -365978 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 227.75-9 chr2 99079261 99079531 + 1.25 NA intron (NR_146001, intron 10 of 18) intron (NR_146001, intron 10 of 18) 61784 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 331-14 chr8 81370704 81371008 + 1.25 NA Intergenic Intergenic 76583 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 195.25 chr1 83807687 83807890 + 1.25 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 52758 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 234.5-3 chr10 53394317 53394632 + 1.25 NA Intergenic Intergenic -622774 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 185.75-23 chr15 57392565 57392798 + 1.25 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 16176 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 213.25-29 chr3 8750428 8750731 + 1.25 NA 3' UTR (NM_001354655, exon 4 of 4) 3' UTR (NM_001354655, exon 4 of 4) 16777 NM_001234 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21 caveolin 3 protein-coding 209.5-53 chr9 38287999 38288265 + 1.25 NA Intergenic Intergenic -104570 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 210.75-2 chr1 53886966 53887176 + 1.25 NA intron (NR_135075, intron 1 of 8) L2a|LINE|L2 2726 NM_018982 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 146.5-17 chr11 29401839 29402060 + 1.25 NA Intergenic L1M4|LINE|L1 -192464 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 365.75-6 chr7 93175568 93175949 + 1.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR -27373 NM_001350085 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 162.75-48 chr3 183847309 183847507 + 1.25 NA intron (NM_001324437, intron 4 of 7) AluJo|SINE|Alu -21831 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 116.5-44 chr17 50563718 50563864 + 1.25 NA intron (NR_046058, intron 1 of 33) intron (NR_046058, intron 1 of 33) -1683 NR_038439 253962 Hs.558704 NR_038439 ENSG00000250107 CACNA1G-AS1 CAS1 CACNA1G antisense RNA 1 ncRNA 213.75-37 chr5 135845937 135846219 + 1.25 NA intron (NR_146141, intron 2 of 8) MER1B|DNA|hAT-Charlie 11402 NM_145282 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 118-48 chr4 64194620 64194719 + 1.25 NA Intergenic Intergenic 214781 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 218.75-35 chr6 90314092 90314283 + 1.25 NA Intergenic L2|LINE|L2 1445 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 130.5-86 chr7 27990667 27990807 + 1.25 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -189720 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 278.5-5 chr12 41340982 41341325 + 1.25 NA intron (NM_001164595, intron 3 of 9) L1MA6|LINE|L1 -96586 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 301.25-8 chr5 6855224 6855742 + 1.25 NA Intergenic Intergenic -27562 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 197.5-5 chr1 146022937 146023183 + 1.25 NA Intergenic MLT2A1|LTR|ERVL -1238 NM_213653 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 241-14 chr15 57137147 57137377 + 1.25 NA intron (NM_207038, intron 5 of 19) AluY|SINE|Alu -82168 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 133.5-91 chr5 91978787 91978934 + 1.25 NA Intergenic Intergenic -595543 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 236.25-28 chr4 44150934 44151242 + 1.25 NA Intergenic Intergenic 134026 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 342.75-4 chr2 66710982 66711621 + 1.25 NA Intergenic AluJr|SINE|Alu -8074 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 258.5-22 chr8 127716158 127716662 + 1.25 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 17557 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 229.5-13 chr11 118654899 118655129 + 1.25 NA intron (NM_015157, intron 21 of 23) AluSq|SINE|Alu 11014 NR_106773 102466719 NR_106773 ENSG00000284246 MIR6716 hsa-mir-6716 microRNA 6716 ncRNA 158.75-27 chr18 69796404 69796619 + 1.25 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 151362 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 133.75-40 chr2 56595582 56595716 + 1.25 NA Intergenic Intergenic -409879 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 214.5-40 chr4 31484097 31484286 + 1.25 NA Intergenic AluSg|SINE|Alu -22353 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 154-23 chr14_GL000225v1_random 108623 108775 + 1.25 NA NA BSR/Beta|Satellite|Satellite NA NA 145-44 chr21 30359319 30359531 + 1.25 NA Intergenic Intergenic -10819 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 152.5-78 chr4 12555965 12556117 + 1.25 NA Intergenic Intergenic 332590 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 183.25-21 chr2 40651119 40651335 + 1.25 NA Intergenic L1PA15|LINE|L1 -138792 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 196.5-69 chr6 153424303 153424677 + 1.25 NA Intergenic Intergenic -293208 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 134-53 chr3 110576882 110577009 + 1.25 NA Intergenic Intergenic 493014 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 212.75-17 chr2 225100993 225101301 + 1.25 NA Intergenic Intergenic -58679 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 265-31 chr9 87742418 87742661 + 1.25 NA Intergenic Intergenic 16420 NM_001912 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 117.25-32 chr15 87866703 87866855 + 1.25 NA 3' UTR (NM_002530, exon 19 of 19) 3' UTR (NM_002530, exon 19 of 19) 79489 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 223.75-4 chr11 42851529 42851873 + 1.25 NA Intergenic L1MEc|LINE|L1 417668 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 180.25-58 chr6 71311140 71311414 + 1.25 NA Intergenic Intergenic 22466 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 186.25-58 chr9 82411883 82412147 + 1.25 NA Intergenic Intergenic 423243 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 307.25-9 chr7 28670057 28670390 + 1.25 NA intron (NM_182899, intron 4 of 9) MER44A|DNA|TcMar-Tigger -15910 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 164.5-29 chr17 75216942 75217133 + 1.25 NA intron (NM_001303276, intron 5 of 17) AluJo|SINE|Alu 11358 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 333.75-5 chr8 120432477 120432902 + 1.25 NA intron (NM_014078, intron 2 of 6) intron (NM_014078, intron 2 of 6) 12461 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 193-40 chr4 43366243 43366633 + 1.25 NA Intergenic Intergenic 126105 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 320.25-15 chr8 79968150 79968596 + 1.25 NA intron (NM_014018, intron 2 of 2) MER5A|DNA|hAT-Charlie 61886 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 140-53 chr5 141560456 141560605 + 1.25 NA intron (NR_038333, intron 1 of 2) intron (NR_038333, intron 1 of 2) 2219 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 156.25-18 chr14 49901554 49901744 + 1.25 NA Intergenic Intergenic 8567 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 225-46 chr9 109706386 109706622 + 1.25 NA intron (NM_001037293, intron 1 of 6) L1MB7|LINE|L1 65716 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 133.25-86 chr8 138994617 138994879 + 1.25 NA Intergenic ERVL-int|LTR|ERVL -80707 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 171.75-40 chr4 72383741 72383915 + 1.25 NA intron (NM_014243, intron 4 of 21) L1MEf|LINE|L1 185393 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 223.25-10 chr14 44727056 44727330 + 1.25 NA Intergenic MLT1F2|LTR|ERVL-MaLR 71933 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 241.75-30 chr8 131161128 131161425 + 1.25 NA Intergenic L1PA13|LINE|L1 -120367 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 218.5-36 chr4 64622958 64623167 + 1.25 NA Intergenic LTR22A|LTR|ERVK -213602 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 216.25-31 chr5 92705841 92706078 + 1.25 NA Intergenic Intergenic 865384 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 216.75-16 chr14 30322759 30323058 + 1.25 NA Intergenic Intergenic -236215 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 164.25-12 chr11 6545611 6545813 + 1.25 NA exon (NM_144666, exon 21 of 43) exon (NM_144666, exon 21 of 43) 48416 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 264-28 chr8 70520216 70520659 + 1.25 NA Intergenic Intergenic 49303 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 243.75-9 chr17 59201125 59201403 + 1.25 NA intron (NM_018304, intron 9 of 9) MLT1J|LTR|ERVL-MaLR -8746 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 157-41 chr3 119997015 119997164 + 1.25 NA intron (NM_002093, intron 2 of 11) intron (NM_002093, intron 2 of 11) 87559 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 141.5-84 chr4 112153707 112153864 + 1.25 NA intron (NM_152400, intron 1 of 1) intron (NM_152400, intron 1 of 1) 8331 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 130.25-63 chr3 103252382 103252639 + 1.25 NA Intergenic LTR33C|LTR|ERVL 271606 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 182.75-32 chr3 185069272 185069518 + 1.25 NA Intergenic Intergenic 83665 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 130.5-27 chr12 53485960 53486138 + 1.25 NA intron (NM_006301, intron 5 of 14) intron (NM_006301, intron 5 of 14) 13409 NM_001193511 7786 Hs.713539 NM_006301 ENSG00000139625 MAP3K12 DLK|MEKK12|MUK|ZPK|ZPKP1 mitogen-activated protein kinase kinase kinase 12 protein-coding 128.5-66 chr3 170502021 170502154 + 1.25 NA intron (NM_020949, intron 2 of 7) intron (NM_020949, intron 2 of 7) 34802 NR_135557 101928583 Hs.407600 NR_135555 ENSG00000285051 SLC7A14-AS1 - SLC7A14 antisense RNA 1 ncRNA 380.75 chr11 16024231 16024850 + 1.25 NA intron (NM_033326, intron 12 of 15) intron (NM_033326, intron 12 of 15) -54919 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 180.25-71 chr9 97603462 97603664 + 1.25 NA intron (NM_139246, intron 9 of 9) intron (NM_139246, intron 9 of 9) 29805 NM_139246 158427 Hs.723236 NM_139246 ENSG00000136925 TSTD2 C9orf97 thiosulfate sulfurtransferase like domain containing 2 protein-coding 200.5-60 chr7 120241022 120241284 + 1.25 NA Intergenic Intergenic -32022 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 129.25-14 chr11 76514806 76514957 + 1.25 NA intron (NM_001300942, intron 11 of 21) intron (NM_001300942, intron 11 of 21) 69856 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 295.25-20 chr7 89101125 89101389 + 1.25 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -305520 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 151.75-53 chr3 18533158 18533406 + 1.25 NA Intergenic Intergenic -87690 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 157-34 chr21 19186231 19186365 + 1.25 NA Intergenic HERVL40-int|LTR|ERVL -426486 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 121.75-5 chr10 3608578 3608760 + 1.25 NA intron (NR_131187, intron 1 of 1) L1PA16|LINE|L1 -105831 NR_155746 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 138.25-69 chr5 3693678 3693840 + 1.25 NA Intergenic Intergenic 97927 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 151.75-67 chr6 46602129 46602355 + 1.25 NA intron (NM_016593, intron 7 of 11) intron (NM_016593, intron 7 of 11) 50576 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 215-36 chr5 25942537 25942779 + 1.25 NA Intergenic Intergenic 751705 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 237.75-15 chr13 74272228 74272587 + 1.25 NA Intergenic Intergenic 40963 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 375.25-2 chr13 52861806 52862166 + 1.25 NA Intergenic MER91A|DNA|hAT-Tip100 -13346 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 389.5-4 chr3 28951233 28951756 + 1.25 NA Intergenic Intergenic 329445 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 305-9 chr15 65111923 65112300 + 1.25 NA Intergenic Intergenic -5752 NM_001163692 390595 Hs.659256 NM_001163692 ENSG00000246922 UBAP1L UBAP-1L ubiquitin associated protein 1 like protein-coding 138.5-65 chr20 14953989 14954205 + 1.25 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -24579 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 236.25-34 chr6 36487345 36487599 + 1.25 NA non-coding (NR_104481, exon 4 of 4) non-coding (NR_104481, exon 4 of 4) 44472 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 218.25-14 chr12 92670396 92670656 + 1.25 NA Intergenic MER94|DNA|hAT-Blackjack -32317 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 142.25-63 chr6 39426196 39426395 + 1.25 NA intron (NM_001289020, intron 14 of 21) intron (NM_001289020, intron 14 of 21) 5095 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 314.25-2 chr10 7002226 7002558 + 1.25 NA Intergenic Intergenic 184392 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 122-59 chr5 9068651 9068804 + 1.25 NA intron (NM_003966, intron 16 of 22) HAL1|LINE|L1 -14832 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 135-70 chr7 49452469 49452663 + 1.25 NA Intergenic Intergenic -321072 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 122.25-77 chr5 41575898 41576066 + 1.25 NA Intergenic Intergenic -65381 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 231.25-13 chr16 73874498 73874800 + 1.25 NA Intergenic Intergenic 340872 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 198-40 chr5 75444998 75445244 + 1.25 NA intron (NM_031361, intron 3 of 16) L1M4c|LINE|L1 66508 NM_031361 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 139-6 chr10 93193166 93193353 + 1.25 NA Intergenic Intergenic 119366 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 210-6 chr11 115606365 115606631 + 1.25 NA Intergenic Intergenic -102083 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 177-40 chr3 84613223 84613389 + 1.25 NA Intergenic Intergenic 256269 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 283.5-16 chr5 30882873 30883110 + 1.25 NA Intergenic Intergenic -310695 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 155-22 chr16 68538749 68538897 + 1.25 NA promoter-TSS (NR_130978) promoter-TSS (NR_130978) -390 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 130.75-17 chr13 64682811 64682997 + 1.25 NA Intergenic L1MB8|LINE|L1 -606893 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 126.5-96 chr5 151133508 151133657 + 1.25 NA intron (NM_001193544, intron 7 of 24) Tigger3a|DNA|TcMar-Tigger 8102 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 132.25-74 chr5 88773675 88773785 + 1.25 NA intron (NM_001364333, intron 3 of 9) intron (NM_001364333, intron 3 of 9) 11781 NM_001364356 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 156-31 chr16 76198039 76198225 + 1.25 NA Intergenic Intergenic -79269 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 210-30 chr5 124416245 124416529 + 1.25 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 22133 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 138.75-36 chr2 4536281 4536460 + 1.25 NA Intergenic Intergenic 119852 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 246.25-24 chr5 167584214 167584591 + 1.25 NA intron (NM_001368145, intron 1 of 26) MER51A|LTR|ERV1 10743 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 141.5-65 chr2 189945884 189946010 + 1.25 NA Intergenic Intergenic 116782 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 271.5-10 chr17 70069790 70070262 + 1.25 NA Intergenic Intergenic -5199 NM_018658 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 190-3 chr10 30552299 30552497 + 1.25 NA Intergenic LTR9|LTR|ERV1 77355 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 165-44 chr5 109833986 109834234 + 1.25 NA intron (NM_002372, intron 16 of 21) intron (NM_002372, intron 16 of 21) -49072 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 224.75-3 chr1 113799804 113800005 + 1.25 NA intron (NR_130896, intron 1 of 7) intron (NR_130896, intron 1 of 7) 12572 NR_130896 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 198.5-32 chr3 131550423 131550664 + 1.25 NA intron (NM_130808, intron 13 of 15) intron (NM_130808, intron 13 of 15) -47572 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 136.75-13 chr10 93676777 93676984 + 1.25 NA intron (NM_145246, intron 11 of 13) intron (NM_145246, intron 11 of 13) 25692 NM_001347715 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 220.5-35 chr4 64890871 64891163 + 1.25 NA Intergenic Intergenic 113483 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 305.25-6 chr18 66595835 66596170 + 1.25 NA intron (NM_001271028, intron 1 of 9) L1PA15|LINE|L1 8088 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 126.25-28 chr13 112806953 112807182 + 1.25 NA intron (NM_032189, intron 4 of 28) L1MB7|LINE|L1 -52336 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 223.25-6 chr11 114457657 114457849 + 1.25 NA Intergenic Intergenic 18286 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 133.5-104 chr6 138932048 138932312 + 1.25 NA intron (NM_031922, intron 8 of 19) intron (NM_031922, intron 8 of 19) 56081 NM_001286612 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 171.25-8 chr11 114930052 114930353 + 1.25 NA Intergenic Intergenic 251675 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 238.75-13 chr3 119059969 119060300 + 1.25 NA intron (NM_152538, intron 3 of 8) MLT1N2|LTR|ERVL-MaLR -25288 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 238-28 chr5 84353507 84353780 + 1.25 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 31224 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 179.5-99 chr8 134158883 134159038 + 1.25 NA Intergenic Intergenic 272464 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 155.75-73 chr9 32604549 32604741 + 1.25 NA Intergenic MIRb|SINE|MIR 31024 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 117.5-98 chr9 19354389 19354532 + 1.25 NA intron (NR_073201, intron 25 of 31) L1ME5|LINE|L1 25776 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 258-33 chr9 99987244 99987477 + 1.25 NA intron (NM_015051, intron 10 of 11) intron (NM_015051, intron 10 of 11) 80706 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 137.75-3 chr1 187628678 187628859 + 1.25 NA Intergenic Intergenic 185140 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 141.5-26 chr12 106481459 106481669 + 1.25 NA intron (NM_001160708, intron 23 of 27) intron (NM_001160708, intron 23 of 27) -101343 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 261.75-29 chr8 81952123 81952341 + 1.25 NA Intergenic Intergenic -109946 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 309.5 chr1 147419542 147419949 + 1.25 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 98130 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 177.25-13 chr16 81891372 81891563 + 1.25 NA intron (NM_002661, intron 10 of 32) intron (NM_002661, intron 10 of 32) 112176 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 213-15 chr13 69318379 69318727 + 1.25 NA intron (NR_125752, intron 3 of 3) intron (NR_125752, intron 3 of 3) 96207 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 220-2 chr1 75912050 75912389 + 1.25 NA intron (NM_002440, intron 19 of 19) intron (NM_002440, intron 19 of 19) 20185 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 115-45 chr20 53668730 53669010 + 1.25 NA Intergenic AluSx|SINE|Alu 60516 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 139.75-54 chr3 34880083 34880282 + 1.25 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 513841 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 198.25-41 chr5 146773560 146773966 + 1.25 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 105022 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 220.25-4 chr10 11491692 11491889 + 1.25 NA intron (NM_014688, intron 8 of 14) ERVL-int|LTR|ERVL 40490 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 119.25-12 chr11 35149661 35149793 + 1.25 NA intron (NM_001001389, intron 1 of 16) intron (NM_001001389, intron 1 of 16) 10556 NM_001202556 960 Hs.502328 NM_000610 ENSG00000026508 CD44 CDW44|CSPG8|ECMR-III|HCELL|HUTCH-I|IN|LHR|MC56|MDU2|MDU3|MIC4|Pgp1 CD44 molecule (Indian blood group) protein-coding 211.5-27 chr2 164399150 164399470 + 1.25 NA Intergenic Intergenic 169185 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 214.25-45 chr8 136244598 136244912 + 1.25 NA Intergenic Intergenic -286043 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 250.75-15 chr4 162144391 162144629 + 1.25 NA intron (NM_001128428, intron 1 of 14) intron (NM_001128428, intron 1 of 14) 19490 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 245.25-22 chr4 164133665 164133908 + 1.25 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 63925 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 137-5 chr1 103011868 103012182 + 1.25 NA intron (NM_001854, intron 14 of 66) intron (NM_001854, intron 14 of 66) 96471 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 190.75-48 chr6 61259072 61259340 + 1.25 NA Intergenic L1PA15|LINE|L1 -314924 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 193.75-27 chr2 225580994 225581170 + 1.25 NA intron (NM_001371273, intron 4 of 7) intron (NM_001371273, intron 4 of 7) 180196 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 193-10 chr10 33507889 33508127 + 1.25 NA Intergenic Intergenic -173103 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 150.25-59 chr5 30025726 30025882 + 1.25 NA Intergenic L1PB1|LINE|L1 145244 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 241 chr1 18069498 18069902 + 1.25 NA intron (NR_125946, intron 2 of 2) AluJb|SINE|Alu 4043 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 156.25-74 chr8 133741710 133741942 + 1.25 NA Intergenic Intergenic 35526 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 251-12 chr14 64125157 64125417 + 1.25 NA intron (NM_015180, intron 71 of 114) intron (NM_015180, intron 71 of 114) -30162 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 262.25-8 chr16 55456945 55457353 + 1.25 NA intron (NR_147198, intron 1 of 6) intron (NR_147198, intron 1 of 6) 5148 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 130-27 chr16 81515130 81515261 + 1.25 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -18707 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 239.75-27 chr6 126156870 126157254 + 1.25 NA Intergenic MamGypLTR2c|LTR|Gypsy 170522 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 195.75-57 chr9 127794390 127794604 + 1.25 NA Intergenic Intergenic -8361 NR_110170 2356 Hs.335084 NM_004957 ENSG00000136877 FPGS - folylpolyglutamate synthase protein-coding 146-67 chrX 74855736 74855907 + 1.25 NA intron (NM_001008537, intron 1 of 3) L1M4|LINE|L1 69631 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 131.25-75 chr6 49352343 49352468 + 1.25 NA Intergenic L1PB4|LINE|L1 110848 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 247.5-11 chr16 56121894 56122148 + 1.25 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 69073 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 143.25-23 chr13 77028461 77028809 + 1.25 NA Intergenic Intergenic -1476 NM_012158 26224 Hs.508284 NM_012158 ENSG00000005812 FBXL3 FBL3|FBL3A|FBXL3A|IDDSFAS F-box and leucine rich repeat protein 3 protein-coding 199.5-52 chr7 18765767 18765986 + 1.25 NA intron (NM_058176, intron 14 of 22) intron (NM_058176, intron 14 of 22) 256606 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 202-26 chr7 13388511 13388705 + 1.25 NA Intergenic L1M4a2|LINE|L1 597906 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 144.75-85 chr8 91702345 91702506 + 1.25 NA Intergenic L1MA1|LINE|L1 315255 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 195.5-75 chr6 38203897 38204215 + 1.25 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -277540 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 154.75-67 chrX 37894791 37894999 + 1.25 NA Intergenic MLT2B1|LTR|ERVL -47324 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 114.75-97 chr7 46116479 46116648 + 1.25 NA Intergenic L1MC3|LINE|L1 -195291 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 170-15 chr18 11596728 11596912 + 1.25 NA Intergenic AluSg7|SINE|Alu -12738 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 264-6 chr12 4553248 4553698 + 1.25 NA intron (NM_006479, intron 7 of 8) MIRb|SINE|MIR -8735 NM_001371301 130.75-68 chr6 140891876 140892040 + 1.25 NA Intergenic Intergenic 208144 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 140.75-68 chr8 119471348 119471500 + 1.25 NA Intergenic L1M4b|LINE|L1 54978 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 147.75-15 chr11 112139657 112139930 + 1.25 NA Intergenic AluSx1|SINE|Alu 24301 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 193.5-2 chr1 114378891 114379083 + 1.25 NA Intergenic HERV35I-int|LTR|ERV1 132216 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 150.25-16 chr12 98279912 98280126 + 1.25 NA Intergenic MIRc|SINE|MIR 177126 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 233.75-30 chr6 136422796 136423021 + 1.25 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 43967 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 257-10 chr2 236554224 236554602 + 1.25 NA Intergenic LTR41|LTR|ERVL -15412 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 176.75-18 chr18 1928879 1929159 + 1.25 NA Intergenic Intergenic -569390 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 331-13 chr7 153255003 153255291 + 1.25 NA Intergenic MER90a|LTR|ERV1 157087 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 249.25-14 chr2 211016516 211016829 + 1.25 NA Intergenic Intergenic 399101 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 260-15 chr2 122807059 122807446 + 1.25 NA Intergenic Intergenic 266229 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 168.75-8 chr12 4730101 4730301 + 1.25 NA intron (NM_017417, intron 2 of 10) L1MA6|LINE|L1 9801 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 252-28 chr7 56657510 56657806 + 1.25 NA Intergenic L1M1|LINE|L1 -119528 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 246-20 chr5 28226337 28226692 + 1.25 NA Intergenic L1MD1|LINE|L1 61151 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 170.25-34 chr2 98400632 98400888 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -43827 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 215-24 chr2 55281276 55281609 + 1.25 NA promoter-TSS (NR_027258) promoter-TSS (NR_027258) -877 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 261.75-34 chrX 151617518 151617754 + 1.25 NA intron (NM_173493, intron 4 of 15) intron (NM_173493, intron 4 of 15) 53961 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 220.25-27 chr20 58831312 58831745 + 1.25 NA intron (NR_002785, intron 4 of 4) AluY|SINE|Alu -8220 NM_016592 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 190.75-23 chr17 17960775 17961017 + 1.25 NA intron (NM_001288787, intron 1 of 13) intron (NM_001288787, intron 1 of 13) 11504 NM_001033551 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 148.5-112 chr9 23471649 23471767 + 1.25 NA Intergenic Intergenic 200691 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 276.25-7 chr2 37201069 37201400 + 1.25 NA TTS (NM_005760) TTS (NM_005760) 4738 NM_001322375 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 231-24 chr3 80741436 80741717 + 1.25 NA Intergenic L1MC|LINE|L1 -23321 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 172.75-23 chr20 61000173 61000475 + 1.25 NA Intergenic Intergenic -78740 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 249.5-18 chr3 98368792 98369101 + 1.25 NA Intergenic L1MC3|LINE|L1 15092 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 312.75-5 chr17 64227128 64227676 + 1.25 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 3332 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 184.25-46 chr6 106210515 106210755 + 1.25 NA intron (NR_104402, intron 4 of 5) intron (NR_104402, intron 4 of 5) 105631 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 138.5-79 chr4 53458478 53458641 + 1.25 NA TTS (NM_001126328) TTS (NM_001126328) -41518 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 201-43 chr5 155685717 155685999 + 1.25 NA Intergenic HAL1|LINE|L1 -640899 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 114-64 chr4 44370238 44370349 + 1.25 NA intron (NM_198353, intron 1 of 1) Tigger19b|DNA|TcMar-Tigger 78516 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 223.25-30 chr8 86623711 86624083 + 1.25 NA intron (NM_019098, intron 13 of 17) L2a|LINE|L2 109462 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 338-10 chr6 23544234 23544569 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie -581814 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 240.5-39 chr5 23963789 23964005 + 1.25 NA intron (NR_131245, intron 1 of 4) THE1B|LTR|ERVL-MaLR 12549 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 147.5-38 chr18 4078499 4078692 + 1.25 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 116242 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 115.75-36 chr17 75290278 75290378 + 1.25 NA promoter-TSS (NM_021734) promoter-TSS (NM_021734) -879 NM_021734 60386 Hs.514470 NM_021734 ENSG00000125454 SLC25A19 DNC|MCPHA|MUP1|THMD3|THMD4|TPC solute carrier family 25 member 19 protein-coding 262-4 chr1 151952455 151952781 + 1.25 NA Intergenic MER65-int|LTR|ERV1 41241 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 200.5-28 chr19 29608569 29608840 + 1.25 NA exon (NM_006627, exon 2 of 7) exon (NM_006627, exon 2 of 7) 2421 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 282.25-4 chr11 69749490 69749924 + 1.25 NA Intergenic MER53|DNA|hAT 25634 NM_002007 2249 Hs.1755 NM_002007 ENSG00000075388 FGF4 FGF-4|HBGF-4|HST|HST-1|HSTF-1|HSTF1|K-FGF|KFGF fibroblast growth factor 4 protein-coding 137 chr1 22066407 22066712 + 1.25 NA intron (NM_044472, intron 1 of 5) intron (NM_044472, intron 1 of 5) 13850 NM_044472 998 Hs.467637 NM_001791 ENSG00000070831 CDC42 CDC42Hs|G25K|TKS cell division cycle 42 protein-coding 219.5-39 chr5 38382143 38382409 + 1.25 NA intron (NM_152403, intron 6 of 21) intron (NM_152403, intron 6 of 21) 21195 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 116-20 chr14 60033830 60034001 + 1.25 NA intron (NR_075071, intron 29 of 32) L1M5|LINE|L1 -57996 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 312.25-4 chr17 58124726 58125201 + 1.25 NA Intergenic MER97b|DNA|hAT-Tip100 -30191 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 231.5-2 chr1 110323347 110323737 + 1.25 NA intron (NR_036595, intron 1 of 3) intron (NR_036595, intron 1 of 3) 15629 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 119-5 chr1 109812213 109812325 + 1.25 NA Intergenic Intergenic -48346 NM_001319952 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 141-49 chr22 25748870 25748990 + 1.25 NA intron (NM_001318245, intron 1 of 43) intron (NM_001318245, intron 1 of 43) 6742 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 201.5-63 chr8 83211850 83212120 + 1.25 NA Intergenic MER47A|DNA|TcMar-Tigger -191773 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 141.75-30 chr16 52312879 52312997 + 1.25 NA Intergenic Intergenic 54374 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 213.75-44 chr7 11203202 11203470 + 1.25 NA Intergenic Intergenic 229464 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 278-24 chr7 15247889 15248296 + 1.25 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -273234 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 166.5-63 chr22 26430804 26431062 + 1.25 NA intron (NM_020437, intron 1 of 3) intron (NM_020437, intron 1 of 3) 1673 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 203.25-54 chr8 123395133 123395358 + 1.25 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 1202 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 202.5-48 chr6 121895056 121895513 + 1.25 NA Intergenic Intergenic 459638 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 332.5 chr1 169952693 169953115 + 1.25 NA intron (NM_014970, intron 19 of 19) intron (NM_014970, intron 19 of 19) -58945 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 167-51 chr4 185220746 185220970 + 1.25 NA intron (NM_001317781, intron 1 of 18) L2|LINE|L2 16621 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 180.75-4 chr1 45137623 45137896 + 1.25 NA intron (NM_020883, intron 1 of 13) L2a|LINE|L2 68846 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 128.5-8 chr10 13442942 13443270 + 1.25 NA intron (NM_001369863, intron 8 of 8) intron (NM_001369863, intron 8 of 8) 59870 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 232.75-23 chr7 14013543 14013805 + 1.25 NA Intergenic Intergenic -22249 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 206.5-18 chr14 63234454 63234681 + 1.25 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 30124 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 257.75-26 chr9 106362235 106362574 + 1.25 NA Intergenic L1M4|LINE|L1 -238524 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 194.25-43 chr5 89227205 89227413 + 1.25 NA intron (NR_136219, intron 7 of 9) L1MB7|LINE|L1 -323204 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 148-17 chr12 106081079 106081197 + 1.25 NA intron (NM_014840, intron 4 of 6) L2a|LINE|L2 58895 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 249-3 chr1 102756865 102757272 + 1.25 NA Intergenic L1MA9|LINE|L1 351428 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 239.75-9 chr13 112076617 112076911 + 1.25 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 9615 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 187.25-27 chr19 28483949 28484198 + 1.25 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -122615 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 165-31 chr2 155401724 155402113 + 1.25 NA Intergenic MSTC|LTR|ERVL-MaLR 703223 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 212-38 chr5 155836186 155836386 + 1.25 NA Intergenic Intergenic -490471 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 321.75-23 chr8 122672414 122672884 + 1.25 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 21457 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 150.5-37 chr17 30285139 30285280 + 1.25 NA intron (NM_000386, intron 6 of 11) intron (NM_000386, intron 6 of 11) 6735 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 230.75-11 chr2 114976954 114977273 + 1.25 NA intron (NM_001321910, intron 2 of 26) HAL1b|LINE|L1 -87460 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 245-5 chr1 203757666 203758040 + 1.25 NA Intergenic AluSp|SINE|Alu -7330 NM_017773 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 158-53 chr5 161052743 161052962 + 1.25 NA Intergenic Intergenic -114226 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 139.25-62 chr4 31024365 31024541 + 1.25 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -146691 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 175.75-56 chr9 122316732 122316936 + 1.25 NA intron (NR_144421, intron 8 of 8) L1ME4a|LINE|L1 51952 NM_138777 92399 Hs.368011 NM_138777 ENSG00000148187 MRRF MRFF|MTRRF|RRF mitochondrial ribosome recycling factor protein-coding 184.5-25 chr14 52931158 52931491 + 1.25 NA intron (NM_006832, intron 2 of 14) intron (NM_006832, intron 2 of 14) 19726 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 163-54 chr8 130290315 130290488 + 1.25 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 6132 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 132.75-70 chr4 37766670 37766843 + 1.25 NA Intergenic MIR|SINE|MIR -59930 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 195.75-55 chr8 138770942 138771144 + 1.25 NA intron (NM_152888, intron 16 of 64) MIR|SINE|MIR 142998 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 222.75-19 chr17 29321993 29322222 + 1.25 NA Intergenic FLAM_C|SINE|Alu -27959 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 145.75-28 chr18 58353505 58353642 + 1.25 NA intron (NM_001144965, intron 18 of 30) intron (NM_001144965, intron 18 of 30) -97501 NR_029667 406906 NR_029667 ENSG00000284440 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122 microRNA 122 ncRNA 170-45 chr5 91367341 91367560 + 1.25 NA Intergenic AluJr|SINE|Alu 12647 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 292-12 chr4 54111052 54111447 + 1.25 NA Intergenic MIRc|SINE|MIR 11086 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 133.25-37 chr19 53719392 53719732 + 1.25 NA promoter-TSS (NR_030204) promoter-TSS (NR_030204) -534 NR_030204 574482 NR_030204 ENSG00000207735 MIR520D MIRN520D microRNA 520d ncRNA 149-30 chr20 43018691 43018838 + 1.25 NA intron (NM_133170, intron 1 of 31) L1ME3G|LINE|L1 50021 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 224.25-3 chr1 211124210 211124477 + 1.25 NA intron (NM_002238, intron 1 of 10) intron (NM_002238, intron 1 of 10) 9031 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 210.5-50 chr5 45586846 45587158 + 1.25 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 109378 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 204.5-30 chr2 128837038 128837342 + 1.25 NA Intergenic Intergenic -27410 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 170.75-68 chr7 85504386 85504606 + 1.25 NA Intergenic L1MA2|LINE|L1 83374 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 124-29 chr2 169073070 169073257 + 1.25 NA intron (NM_001142270, intron 1 of 5) intron (NM_001142270, intron 1 of 5) 588 NM_001142270 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 184.25-5 chr1 200774612 200774817 + 1.25 NA intron (NM_001297707, intron 2 of 17) L2a|LINE|L2 35142 NM_001297708 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 140.5-64 chr3 99870289 99870472 + 1.25 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) 5793 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 182.25-61 chr9 28094778 28095038 + 1.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -521042 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 256-16 chr2 72417591 72417875 + 1.25 NA intron (NM_001321729, intron 18 of 22) L1MEi|LINE|L1 -269871 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 286.25-10 chr2 156426464 156426767 + 1.25 NA Intergenic L2a|LINE|L2 -8937 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 200-16 chr15 61882839 61883062 + 1.25 NA intron (NM_001018088, intron 68 of 81) intron (NM_001018088, intron 68 of 81) 153032 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 145.75-61 chr5 25622494 25622647 + 1.25 NA Intergenic L1PA15|LINE|L1 431617 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 219.75-41 chr7 89276395 89276641 + 1.25 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -480781 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 287.5-4 chr10 91725004 91725464 + 1.25 NA Intergenic Intergenic 72962 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 127.25-60 chr3 3857726 3857887 + 1.25 NA Intergenic Intergenic -56931 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 115-27 chr14 60678507 60678670 + 1.25 NA Intergenic Intergenic -29111 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 195.75-35 chr4 12375666 12376019 + 1.25 NA Intergenic L2a|LINE|L2 152391 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 157.75-63 chr5 30400517 30400767 + 1.25 NA Intergenic AluJb|SINE|Alu 520082 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 206-23 chr3 178767383 178767685 + 1.25 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 92871 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 134-23 chr13 22145162 22145342 + 1.25 NA Intergenic MIR|SINE|MIR -65033 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 176-25 chr3 2309892 2310056 + 1.25 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 71145 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 149-56 chr8 112958058 112958217 + 1.25 NA intron (NM_052900, intron 6 of 68) intron (NM_052900, intron 6 of 68) 314644 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 155.5-51 chr2 17007210 17007499 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -341520 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 162.5-40 chr2 118930515 118930726 + 1.25 NA Intergenic L1M4|LINE|L1 -11549 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 255.75-7 chr14 97945247 97945805 + 1.25 NA intron (NR_152750, intron 2 of 2) intron (NR_152750, intron 2 of 2) 32598 NR_152749 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 184.25-31 chr3 162256196 162256464 + 1.25 NA Intergenic L1PA15|LINE|L1 759522 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 212.75 chr1 183141929 183142174 + 1.25 NA promoter-TSS (NR_149048) promoter-TSS (NR_149048) -781 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 224.5-31 chr5 57536155 57536481 + 1.25 NA Intergenic L1ME2|LINE|L1 -34024 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 158.25-61 chr7 68351868 68352152 + 1.25 NA Intergenic Intergenic 331757 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 280.75-3 chr14 52458621 52458892 + 1.25 NA intron (NM_001160047, intron 16 of 20) intron (NM_001160047, intron 16 of 20) 93749 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 284.25-13 chr2 230283006 230283396 + 1.25 NA intron (NM_001278453, intron 12 of 23) MER68-int|LTR|ERVL -43970 NM_138402 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 181.25-7 chr10 86485660 86485859 + 1.25 NA intron (NM_001318328, intron 4 of 18) intron (NM_001318328, intron 4 of 18) 36025 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 252.5-20 chr2 199736109 199736455 + 1.25 NA Intergenic Intergenic 114891 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 118.75-25 chr12 110295276 110295432 + 1.25 NA intron (NM_170665, intron 4 of 19) AluJo|SINE|Alu 14107 NM_170665 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 181.5-52 chr5 28145090 28145272 + 1.25 NA Intergenic L2a|LINE|L2 142484 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 138.75-38 chr2 136291275 136291505 + 1.25 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -173235 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 258.25-15 chr20 51640238 51640528 + 1.25 NA intron (NM_006045, intron 14 of 27) MER20|DNA|hAT-Charlie -77544 NM_001258295 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 207 chr1 12336662 12336970 + 1.25 NA intron (NM_018156, intron 39 of 68) intron (NM_018156, intron 39 of 68) 106786 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 277.25-25 chr5 145117643 145118031 + 1.25 NA Intergenic MIRb|SINE|MIR 717505 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 222.5-2 chr1 82900648 82900916 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie -2401 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 228-18 chr17 64702174 64702435 + 1.25 NA Intergenic Intergenic -39997 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 216.75-22 chr2 32963643 32963957 + 1.25 NA intron (NM_206943, intron 2 of 33) MER5A|DNA|hAT-Charlie 16847 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 195.25-22 chr2 7118402 7118618 + 1.25 NA Intergenic Intergenic -40630 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 189.75-14 chr16 11806643 11806837 + 1.25 NA Intergenic Intergenic -9482 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 199.25-22 chr2 217011815 217012129 + 1.25 NA Intergenic AluSz6|SINE|Alu 141200 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 209.5-37 chr5 14782770 14783030 + 1.25 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 43112 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 130.25-79 chr6 16381624 16381762 + 1.25 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 143106 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 282-18 chr22 22718732 22719211 + 1.25 NA Intergenic Intergenic 72659 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 146.5-2 chr1 79887123 79887284 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie -648552 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 187-61 chr8 13410537 13410710 + 1.25 NA intron (NM_024767, intron 2 of 4) L1M5|LINE|L1 104228 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 233-34 chr9 125976301 125976673 + 1.25 NA Intergenic L1M5|LINE|L1 228304 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 308-5 chr2 143315101 143315552 + 1.25 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 185907 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 236.75-20 chr7 137706881 137707084 + 1.25 NA intron (NM_001321708, intron 1 of 32) intron (NM_001321708, intron 1 of 32) 139350 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 218.25-31 chr3 181021119 181021351 + 1.25 NA Intergenic Intergenic -31461 NR_033722 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 152.5-99 chr8 87336632 87336775 + 1.25 NA intron (NM_173538, intron 8 of 10) L1PA8|LINE|L1 470288 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 297.25-15 chr5 43698818 43699143 + 1.25 NA intron (NM_012343, intron 19 of 21) L3|LINE|CR1 -95750 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 217.25-22 chr3 99418545 99418894 + 1.25 NA Intergenic LTR105_Mam|LTR|ERVL -219875 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 261-22 chr19 39967249 39967570 + 1.25 NA Intergenic Intergenic -3596 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 132-17 chr12 1981269 1981402 + 1.25 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) 23122 NM_001319292 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 168.5-66 chr6 162569823 162570136 + 1.25 NA intron (NM_004562, intron 1 of 11) L1MA1|LINE|L1 -157153 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 276.75-19 chr7 126835367 126835650 + 1.25 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 222676 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 302.25-9 chr20 21368540 21368866 + 1.25 NA intron (NM_001317960, intron 27 of 29) intron (NM_001317960, intron 27 of 29) 28823 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 183.25-2 chr1 179812502 179812687 + 1.25 NA intron (NM_001329719, intron 3 of 4) intron (NM_001329719, intron 3 of 4) 8670 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 256.25-2 chr12 63375562 63375777 + 1.25 NA Intergenic Intergenic -222859 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 279.75-4 chr10 80625844 80626180 + 1.25 NA intron (NM_207372, intron 6 of 6) L1ME5|LINE|L1 -23785 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 234.25-12 chr17 62054741 62055024 + 1.25 NA intron (NM_005121, intron 2 of 29) intron (NM_005121, intron 2 of 29) 10396 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 234.25-9 chr16 10842556 10842790 + 1.25 NA Intergenic AluJo|SINE|Alu -23879 NR_134906 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 221.25-36 chr8 83575750 83576077 + 1.25 NA Intergenic Intergenic 172155 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 294.75-4 chr10 77232930 77233464 + 1.25 NA intron (NM_001322838, intron 3 of 29) L1MB8|LINE|L1 92366 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 133.25-26 chr14 85515413 85515605 + 1.25 NA Intergenic Intergenic -14516 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 186.25-40 chr4 67633438 67633655 + 1.25 NA intron (NM_018227, intron 22 of 32) intron (NM_018227, intron 22 of 32) 67609 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 146.75-71 chrX 47966170 47966365 + 1.25 NA Intergenic AluSx1|SINE|Alu 37722 NM_006962 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 274.75-6 chr15 77374048 77374397 + 1.25 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 45882 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 145-35 chr2 101036927 101037093 + 1.25 NA intron (NM_001102426, intron 8 of 19) intron (NM_001102426, intron 8 of 19) 34721 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 135 chr1 25628077 25628249 + 1.25 NA intron (NM_020379, intron 1 of 11) L1ME2|LINE|L1 10695 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 167-37 chr2 202557887 202558119 + 1.25 NA intron (NM_001204, intron 12 of 12) intron (NM_001204, intron 12 of 12) -76966 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 186.25-14 chr12 6157899 6158245 + 1.25 NA Intergenic L1MA5|LINE|L1 -33397 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 225.75-31 chr8 132485795 132486095 + 1.25 NA Intergenic Intergenic -4850 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 200-36 chr5 2217557 2217856 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 94495 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 264.25-10 chr4 58244156 58244443 + 1.25 NA Intergenic Intergenic 292029 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 144.25-16 chr12 27693130 27693355 + 1.25 NA 3' UTR (NM_001198916, exon 28 of 28) 3' UTR (NM_001198916, exon 28 of 28) -3205 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 127.75-16 chr11 26931026 26931141 + 1.25 NA Intergenic Intergenic -63029 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 164-41 chr4 32115638 32115908 + 1.25 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -93351 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 176.75-56 chrX 24082569 24082799 + 1.25 NA Intergenic Intergenic 27728 NM_001415 1968 Hs.539684 NM_001415 ENSG00000130741 EIF2S3 EIF2|EIF2G|EIF2gamma|MEHMO|MRXSBRK|eIF-2gA eukaryotic translation initiation factor 2 subunit gamma protein-coding 138.75-52 chr4 38854330 38854453 + 1.25 NA intron (NM_006068, intron 1 of 1) intron (NM_006068, intron 1 of 1) 2426 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 167.25-6 chr1 109223395 109223549 + 1.25 NA intron (NM_006513, intron 1 of 10) intron (NM_006513, intron 1 of 10) 9554 NM_006513 6301 Hs.531176 NM_006513 ENSG00000031698 SARS NEDMAS|SERRS|SERS seryl-tRNA synthetase protein-coding 224.5-26 chr3 29850204 29850411 + 1.25 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 83849 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 132.75-91 chr7 44714828 44715015 + 1.25 NA Intergenic FLAM_C|SINE|Alu -33645 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 210.75-4 chr1 159983086 159983411 + 1.25 NA Intergenic Intergenic 22024 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 201.5-38 chr3 32707645 32707982 + 1.25 NA intron (NM_001256741, intron 3 of 17) MIR|SINE|MIR 12272 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 139.25-7 chr10 19740181 19740334 + 1.25 NA Intergenic Intergenic -11707 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 144-73 chr8 81068841 81069048 + 1.25 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 43124 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 128.5-55 chr3 37094249 37094396 + 1.25 NA intron (NM_006309, intron 17 of 27) intron (NM_006309, intron 17 of 27) 80260 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 156.5-87 chr8 121131470 121131599 + 1.25 NA Intergenic LTR36|LTR|ERV1 -319488 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 188.75-46 chr7 22124234 22124407 + 1.25 NA intron (NM_012294, intron 25 of 25) intron (NM_012294, intron 25 of 25) 69425 NM_001367600 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 144.5-24 chr11 100068528 100068715 + 1.25 NA intron (NM_001243270, intron 9 of 23) intron (NM_001243270, intron 9 of 23) 512476 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 148.75-13 chr11 132541269 132541464 + 1.25 NA intron (NM_002545, intron 2 of 6) MIRb|SINE|MIR 257064 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 144.5-86 chr5 44421012 44421189 + 1.25 NA Intergenic Intergenic -31680 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 251-5 chr11 9964540 9964834 + 1.25 NA intron (NM_030962, intron 14 of 39) intron (NM_030962, intron 14 of 39) 125545 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 161.25-19 chr13 86130549 86130741 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -331226 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 184.5-41 chr2 38510227 38510524 + 1.25 NA intron (NR_110259, intron 1 of 4) intron (NR_110259, intron 1 of 4) 5365 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 300.5-9 chr18 7976037 7976438 + 1.25 NA intron (NM_002845, intron 7 of 30) L1MC1|LINE|L1 390797 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 150.25-36 chr2 52808118 52808362 + 1.25 NA Intergenic Intergenic -105625 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 164.5-67 chr4 85558446 85558635 + 1.25 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 83390 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 165.75-50 chr4 64309878 64310112 + 1.25 NA intron (NM_001363796, intron 5 of 11) intron (NM_001363796, intron 5 of 11) 99455 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 186-56 chr9 84709173 84709406 + 1.25 NA intron (NM_001018064, intron 5 of 17) intron (NM_001018064, intron 5 of 17) 3388 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 140.5-108 chr7 97670514 97670795 + 1.25 NA Intergenic L2c|LINE|L2 -61432 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 355-11 chr9 69944995 69945433 + 1.25 NA Intergenic Intergenic -98367 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 260.75-17 chr4 80224510 80224908 + 1.25 NA Intergenic Intergenic 27206 NM_001099403 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 301.25-11 chr8 120206485 120206818 + 1.25 NA intron (NM_021110, intron 9 of 47) intron (NM_021110, intron 9 of 47) 81549 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 174.25-12 chr10 77277983 77278227 + 1.25 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 72656 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 167.25-54 chr4 46159703 46159923 + 1.25 NA Intergenic MLT2A1|LTR|ERVL -35759 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 152-47 chr4 55525849 55526065 + 1.25 NA intron (NM_004898, intron 1 of 22) Tigger4a|DNA|TcMar-Tigger 19975 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 155.5-55 chr2 42333942 42334177 + 1.25 NA Intergenic Intergenic 25979 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 136-68 chr8 114345759 114345957 + 1.25 NA Intergenic AluJr4|SINE|Alu -908919 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 296.5-17 chr4 77709203 77709624 + 1.25 NA Intergenic AluSx|SINE|Alu 109651 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 173.5-43 chr2 66154095 66154346 + 1.25 NA Intergenic L1MA4A|LINE|L1 204108 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 224.5-44 chrX 87276426 87276722 + 1.25 NA Intergenic L1MCa|LINE|L1 -241228 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 173.5-31 chr15 98484842 98485081 + 1.25 NA intron (NM_182562, intron 3 of 6) intron (NM_182562, intron 3 of 6) 29375 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 136.5-64 chr21 35107430 35107606 + 1.25 NA Intergenic Intergenic -58220 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 118.75-7 chr1 118015925 118016066 + 1.25 NA exon (NM_206996, exon 29 of 49) exon (NM_206996, exon 29 of 49) 86256 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 149-51 chr7 85748947 85749092 + 1.25 NA Intergenic L1PA7|LINE|L1 327897 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 223-30 chr3 196984017 196984270 + 1.25 NA Intergenic L1MD3|LINE|L1 -15310 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 283.5-29 chr8 129072907 129073287 + 1.25 NA Intergenic Intergenic -107096 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 139.5-22 chr12 63854091 63854218 + 1.25 NA intron (NM_001346201, intron 1 of 21) L1ME3D|LINE|L1 9454 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 192-19 chr15 62785748 62785901 + 1.25 NA intron (NM_015059, intron 42 of 55) intron (NM_015059, intron 42 of 55) -38133 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 230.5-7 chr11 81769146 81769648 + 1.25 NA Intergenic Intergenic 121439 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 114.25-61 chr2 116860836 116860927 + 1.25 NA Intergenic Intergenic -953810 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 148.5-18 chr12 39646477 39646606 + 1.25 NA intron (NM_001031748, intron 4 of 12) intron (NM_001031748, intron 4 of 12) 20358 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 207-30 chr20 24539364 24539651 + 1.25 NA intron (NM_001323606, intron 2 of 4) L1MB3|LINE|L1 69546 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 165.5-46 chr2 50378243 50378402 + 1.25 NA intron (NM_001330093, intron 17 of 22) MER47B|DNA|TcMar-Tigger -30566 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 125.25-3 chr1 229116888 229117020 + 1.25 NA Intergenic Intergenic 57847 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 221.25-21 chr21 36324469 36324733 + 1.25 NA intron (NM_001320445, intron 1 of 15) HAL1|LINE|L1 4404 NM_015358 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 285-22 chr6 165519550 165519840 + 1.25 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 142405 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 187.75-25 chr2 196448224 196448468 + 1.25 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -86169 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 114.5-35 chr17 63099271 63099415 + 1.25 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 133108 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 133.75-24 chr14 71217350 71217522 + 1.25 NA Intergenic MLT1E|LTR|ERVL-MaLR -103040 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 132.5-60 chr2 232674246 232674456 + 1.25 NA intron (NM_025202, intron 3 of 3) L1ME3G|LINE|L1 -22980 NR_103493 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 323.25-3 chr12 46134893 46135649 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR 131245 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 162.25-48 chr8 134883153 134883341 + 1.25 NA Intergenic MIRb|SINE|MIR 33312 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 249.25-2 chr1 191689458 191689748 + 1.25 NA Intergenic L1M2|LINE|L1 -461105 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 203 chr1 59980273 59980439 + 1.25 NA Intergenic Intergenic -53558 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 204.25-56 chr9 73608406 73608680 + 1.25 NA Intergenic Intergenic 456678 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 119.25-79 chr6 46201443 46201684 + 1.25 NA Intergenic Intergenic -30553 NM_001290073 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 161.5-44 chr18 45900687 45900883 + 1.25 NA intron (NM_020964, intron 26 of 43) intron (NM_020964, intron 26 of 43) 66544 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 225-23 chr4 72582391 72582664 + 1.25 NA Intergenic Intergenic -13306 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 191.75-6 chr11 13748974 13749158 + 1.25 NA Intergenic Intergenic -35320 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 179.75-6 chr10 61121432 61121579 + 1.25 NA Intergenic Intergenic 105230 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 252-7 chr13 42964399 42964764 + 1.25 NA intron (NM_033255, intron 3 of 10) intron (NM_033255, intron 3 of 10) 27660 NM_001331228 94240 Hs.546467 NM_033255 ENSG00000133106 EPSTI1 BRESI1 epithelial stromal interaction 1 protein-coding 159.25-2 chr1 233453880 233454007 + 1.25 NA Intergenic FRAM|SINE|Alu 126219 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 130.75-73 chr8 77430030 77430217 + 1.25 NA Intergenic L1ME3|LINE|L1 -20574 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 124-66 chr6 67782949 67783068 + 1.25 NA Intergenic Intergenic -272343 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 148.5-21 chr12 108496655 108496812 + 1.25 NA Intergenic Intergenic -18544 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 206-13 chr18 37677713 37677976 + 1.25 NA Intergenic Intergenic 20709 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 134-19 chr11 110970419 110970626 + 1.25 NA Intergenic Intergenic 126796 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 166.25-15 chr14 41697118 41697390 + 1.25 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 90398 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 232.75-26 chr8 50880049 50880318 + 1.25 NA Intergenic L1MCa|LINE|L1 716052 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 191.5-63 chr7 3745303 3745551 + 1.25 NA intron (NM_152744, intron 4 of 44) L1MD2|LINE|L1 -384258 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 188.75-3 chr1 185156803 185157073 + 1.25 NA promoter-TSS (NM_001105518) promoter-TSS (NM_001105518) 15 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 245-11 chr15 49278072 49278463 + 1.25 NA intron (NM_001289030, intron 6 of 10) AluY|SINE|Alu 108020 NM_001289030 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 142.75-50 chr20 57747388 57747560 + 1.25 NA Intergenic Intergenic -35938 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 268-24 chr5 68978693 68979087 + 1.25 NA intron (NR_130778, intron 1 of 3) L1MA1|LINE|L1 51037 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 166.25-10 chr11 113443530 113443903 + 1.25 NA intron (NM_016574, intron 1 of 6) Tigger13a|DNA|TcMar-Tigger 6372 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 194.25-46 chr7 107322758 107322939 + 1.25 NA intron (NM_181733, intron 11 of 20) L1ME1|LINE|L1 -147209 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 141.5-38 chr16 59131949 59132084 + 1.25 NA Intergenic L1MA8|LINE|L1 -397700 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 282.25-7 chr17 53814972 53815383 + 1.25 NA Intergenic MIRc|SINE|MIR -7750 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 139.5-8 chr10 37222956 37223162 + 1.25 NA intron (NM_052997, intron 34 of 35) intron (NM_052997, intron 34 of 35) -86127 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 187-63 chr8 131183057 131183217 + 1.25 NA Intergenic L1P4|LINE|L1 -142228 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 250.75-3 chr10 114311643 114311967 + 1.25 NA intron (NM_001001936, intron 7 of 18) intron (NM_001001936, intron 7 of 18) 72191 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 176-44 chr8 84299239 84299461 + 1.25 NA intron (NM_001354320, intron 2 of 9) L1PA15|LINE|L1 114684 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 224.25-17 chr17 62998332 62998584 + 1.25 NA intron (NM_025185, intron 1 of 25) L1PA14|LINE|L1 32223 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 289.75-19 chr4 75581206 75581492 + 1.25 NA intron (NM_003948, intron 11 of 11) Tigger3a|DNA|TcMar-Tigger 25283 NM_178497 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 200-14 chr14 75328190 75328470 + 1.25 NA Intergenic Intergenic 33926 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 225.75-8 chr11 91207018 91207368 + 1.25 NA Intergenic Intergenic -337991 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 126-35 chr17 31797926 31798105 + 1.25 NA Intergenic Intergenic 60947 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 264.5-16 chr2 67558656 67559123 + 1.25 NA Intergenic Intergenic 161556 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 236.25-38 chr7 11015305 11015567 + 1.25 NA intron (NR_033436, intron 4 of 16) intron (NR_033436, intron 4 of 16) 41564 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 221-7 chr10 29807427 29807719 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR -70637 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 205.75-21 chr2 32314159 32314474 + 1.25 NA 3' UTR (NM_032312, exon 6 of 6) 3' UTR (NM_032312, exon 6 of 6) 36412 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 174.5-18 chr12 22810921 22811118 + 1.25 NA Intergenic Intergenic 185848 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 209.25-27 chr3 167652224 167652502 + 1.25 NA intron (NM_001348951, intron 2 of 18) intron (NM_001348951, intron 2 of 18) 1579 NM_001348952 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 182.25-60 chr9 2501104 2501337 + 1.25 NA Intergenic L4_C_Mam|LINE|RTE-X -120567 NM_001322226 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 114.75-88 chr6 72359608 72359789 + 1.25 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -7048 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 319-13 chr9 29701803 29702163 + 1.25 NA Intergenic Intergenic -488382 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 182.25-42 chr4 135607900 135608074 + 1.25 NA Intergenic Intergenic 280106 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 300.25-8 chr2 21909989 21910305 + 1.25 NA Intergenic Intergenic -199495 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 305-4 chr10 121502029 121502433 + 1.25 NA intron (NR_073009, intron 9 of 16) intron (NR_073009, intron 9 of 16) 29083 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 186.75-52 chr5 170668060 170668278 + 1.25 NA intron (NR_136214, intron 4 of 5) intron (NR_136214, intron 4 of 5) 13301 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 362-6 chr9 109122218 109122773 + 1.25 NA Intergenic Intergenic -2548 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 204.25-40 chr4 97192598 97192867 + 1.25 NA Intergenic Intergenic -174194 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 187-38 chr3 118780285 118780501 + 1.25 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 30440 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 282.5-3 chr10 52239214 52239516 + 1.25 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 74763 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 184-16 chr14 91083029 91083385 + 1.25 NA intron (NM_001358312, intron 1 of 13) intron (NM_001358312, intron 1 of 13) -22558 NM_182398 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 298.5-16 chr3 3333778 3334149 + 1.25 NA Intergenic Intergenic -154246 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 173.75-18 chr19 28620719 28620893 + 1.25 NA intron (NR_110759, intron 5 of 9) HAL1|LINE|L1 14118 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 133.5-85 chr4 164808663 164808914 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 54657 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 112.75-67 chr5 89143957 89144129 + 1.25 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -239938 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 172.5-16 chr14 72440107 72440355 + 1.25 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -76589 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 169-21 chr17 69958575 69958886 + 1.25 NA Intergenic Intergenic -2977 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 219.25-23 chr4 145133149 145133472 + 1.25 NA TTS (NM_001102653) TTS (NM_001102653) -34769 NM_001256708 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 158.5-65 chr3 2716664 2716928 + 1.25 NA intron (NM_175607, intron 4 of 24) L1MB7|LINE|L1 -175419 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 243.75-25 chr6 35468860 35469131 + 1.25 NA exon (NM_007104, exon 3 of 6) exon (NM_007104, exon 3 of 6) 594 NM_007104 4736 Hs.148340 NM_007104 ENSG00000198755 RPL10A CSA19|Csa-19|L10A|NEDD6 ribosomal protein L10a protein-coding 164.75-48 chr3 149905861 149906128 + 1.25 NA intron (NM_183383, intron 5 of 8) L1MB7|LINE|L1 64901 NM_002628 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 262.25-20 chr7 107032232 107032619 + 1.25 NA Intergenic L2|LINE|L2 -12280 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 260.75 chr1 178529997 178530289 + 1.25 NA Intergenic Intergenic -12653 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 180.25-7 chr10 59348071 59348315 + 1.25 NA intron (NM_001347848, intron 4 of 15) intron (NM_001347848, intron 4 of 15) 14356 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 163.25-13 chr11 76892452 76892619 + 1.25 NA intron (NM_001300953, intron 1 of 9) intron (NM_001300953, intron 1 of 9) 31617 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 183.5-32 chr18 39603755 39603995 + 1.25 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 18300 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 229-3 chr1 113067421 113067657 + 1.25 NA intron (NR_103777, intron 1 of 2) L1MB3|LINE|L1 5563 NR_103777 100996251 Hs.382067 NR_103777 ENSG00000238198 LRIG2-DT - LRIG2 divergent transcript ncRNA 350.75-2 chr14 56680604 56680915 + 1.25 NA Intergenic Intergenic 100961 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 130.75-13 chr11 112557330 112557472 + 1.25 NA Intergenic Intergenic -1599 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 229.25-29 chr8 104525055 104525265 + 1.25 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -40695 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 173-48 chr6 82174400 82174568 + 1.25 NA intron (NM_015525, intron 26 of 28).2 intron (NM_015525, intron 26 of 28).2 -72719 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 229.75-4 chr10 30899227 30899492 + 1.25 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 100158 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 220-8 chr12 45882571 45882759 + 1.25 NA intron (NM_152641, intron 16 of 20) intron (NM_152641, intron 16 of 20) 107909 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 291.75-8 chr18 41653193 41653566 + 1.25 NA Intergenic Intergenic -132702 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 229.25-26 chr8 46424245 46424464 + 1.25 NA Intergenic GSAT|Satellite|centr 193289 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 152.75-59 chr6 38611118 38611288 + 1.25 NA intron (NM_001099272, intron 1 of 10) intron (NM_001099272, intron 1 of 10) -15136 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 124.25-29 chr14 26092270 26092472 + 1.25 NA Intergenic Intergenic 461059 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 171.5-20 chr12 118141904 118142066 + 1.25 NA intron (NM_002567, intron 3 of 3) intron (NM_002567, intron 3 of 3) 5861 NM_002567 5037 Hs.433863 NM_002567 ENSG00000089220 PEBP1 HCNP|HCNPpp|HEL-210|HEL-S-34|HEL-S-96|PBP|PEBP|PEBP-1|RKIP phosphatidylethanolamine binding protein 1 protein-coding 152.25-71 chr8 141556185 141556386 + 1.25 NA Intergenic Intergenic -49055 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 128-39 chr3 117485764 117485871 + 1.25 NA Intergenic Intergenic 205108 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 163.5-76 chr6 8207520 8207674 + 1.25 NA Intergenic Intergenic -105002 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 158.75-32 chr2 145647098 145647286 + 1.25 NA Intergenic Intergenic -939865 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 229.5-40 chr5 42801813 42802136 + 1.25 NA 3' UTR (NM_001134848, exon 9 of 9) 3' UTR (NM_001134848, exon 9 of 9) 9918 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 392.5-5 chr3 104744499 104744988 + 1.25 NA Intergenic Intergenic -621970 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 142.5-25 chr14 63655116 63655318 + 1.25 NA Intergenic Intergenic -13346 NM_001258272 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 159-49 chr4 79045924 79046185 + 1.25 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 74306 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 285.75-19 chr4 30597390 30597728 + 1.25 NA Intergenic Intergenic -122810 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 178.25 chr1 10954708 10954867 + 1.25 NA intron (NM_001366227, intron 7 of 10) AluJb|SINE|Alu 11900 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 202.75-16 chr22 35267947 35268152 + 1.25 NA intron (NM_001003681, intron 5 of 10) AluSx3|SINE|Alu 10556 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 158.75-75 chr9 84984553 84984697 + 1.25 NA intron (NM_001018064, intron 16 of 17) MER5A|DNA|hAT-Charlie 278724 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 167.5-85 chr8 91141488 91141653 + 1.25 NA intron (NR_148895, intron 7 of 10) L2b|LINE|L2 38951 NR_148895 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 147.25-5 chr10 107814746 107814888 + 1.25 NA Intergenic Intergenic 254476 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 126.25-26 chr12 70176771 70176941 + 1.25 NA Intergenic L1MEd|LINE|L1 -66174 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 221-40 chr5 145796820 145797126 + 1.25 NA intron (NM_205846, intron 4 of 6) MIR|SINE|MIR 38369 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 170.5-33 chr16 71550408 71550573 + 1.25 NA Intergenic L1M4b|LINE|L1 -14526 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 280-2 chr1 87991164 87991432 + 1.25 NA Intergenic UCON1|Unknown|Unknown -619643 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 210-19 chr2 138587918 138588149 + 1.25 NA Intergenic Intergenic 86263 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 262.75-10 chr2 9459220 9459566 + 1.25 NA intron (NM_016207, intron 14 of 17) intron (NM_016207, intron 14 of 17) -15158 NM_001320863 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 146.5-77 chr5 107115408 107115651 + 1.25 NA Intergenic Intergenic -104515 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 291-8 chr2 74813329 74813596 + 1.25 NA Intergenic Intergenic -19193 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 114.75-61 chr3 36212545 36212798 + 1.25 NA Intergenic Intergenic -167816 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 155.75-58 chr5 162004477 162004633 + 1.25 NA Intergenic (TTTTACT)n|Simple_repeat|Simple_repeat -3359 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 162.5-60 chr4 43237930 43238123 + 1.25 NA Intergenic Intergenic 254517 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 153.5-41 chr2 34724089 34724389 + 1.25 NA Intergenic Intergenic 46682 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 214.5-50 chr5 114871176 114871441 + 1.25 NA Intergenic L1PA11|LINE|L1 -97895 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 136.5-49 chr18 77213351 77213546 + 1.25 NA Intergenic L1ME4b|LINE|L1 -36400 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 169.75-55 chr6 54521967 54522231 + 1.25 NA Intergenic AluSx|SINE|Alu 213658 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 218-4 chr1 239594334 239594713 + 1.25 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -34550 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 136.75-27 chr13 93384584 93384781 + 1.25 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 157875 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 158.75-74 chr9 35161308 35161574 + 1.25 NA promoter-TSS (NM_001371186) promoter-TSS (NM_001371186) -568 NM_001371189 214.5-22 chr19 32328070 32328294 + 1.25 NA Intergenic AluYk3|SINE|Alu -17428 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 177.25-53 chr8 127458710 127458967 + 1.25 NA intron (NR_024393, intron 4 of 4) L1ME3A|LINE|L1 23301 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 226-14 chr2 49717172 49717389 + 1.25 NA Intergenic Intergenic 256923 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 126.5-109 chr7 30130945 30131113 + 1.25 NA TTS (NM_001350973) TTS (NM_001350973) -3957 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 184.75-51 chr6 7156852 7157162 + 1.25 NA intron (NM_001003699, intron 1 of 12) intron (NM_001003699, intron 1 of 12) 49046 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 181-31 chr2 76583640 76583794 + 1.25 NA Intergenic L1MA8|LINE|L1 -402248 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 135.25-9 chr10 59645705 59645860 + 1.25 NA Intergenic L1M2c|LINE|L1 64109 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 180.75-13 chr10 56834932 56835367 + 1.25 NA Intergenic Intergenic 469410 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 326.5-11 chr6 63261272 63261624 + 1.25 NA Intergenic MIRb|SINE|MIR 58529 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 167-49 chr4 90574017 90574231 + 1.25 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 339093 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 141.75-72 chr6 22566671 22566969 + 1.25 NA Intergenic Intergenic -2746 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 214.5-44 chr4 97154231 97154417 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -212602 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 233.5-9 chr11 78636074 78636338 + 1.25 NA Intergenic L1M2|LINE|L1 -61342 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 191.25-51 chr5 19188239 19188488 + 1.25 NA Intergenic L1PA15-16|LINE|L1 697909 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 199.25-23 chr20 35065829 35066093 + 1.25 NA intron (NM_199368, intron 3 of 18) intron (NM_199368, intron 3 of 18) 26846 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 331-6 chr14 61940861 61941379 + 1.25 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 13425 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 201.5-34 chr2 175648512 175648800 + 1.25 NA Intergenic L1PREC2|LINE|L1 353611 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 179.75-50 chr6 147613469 147613702 + 1.25 NA Intergenic Intergenic 104895 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 125.75-84 chrX 101973928 101974062 + 1.25 NA Intergenic L1PA15|LINE|L1 -41968 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 148.5-20 chr12 69551504 69551707 + 1.25 NA intron (NM_001278351, intron 5 of 10) intron (NM_001278351, intron 5 of 10) -33118 NR_037476 100500868 NR_037476 ENSG00000283677 MIR3913-2 mir-3913-2 microRNA 3913-2 ncRNA 215-39 chr6 108347630 108347948 + 1.25 NA intron (NM_145315, intron 3 of 12) intron (NM_145315, intron 3 of 12) 52735 NM_001323005 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 138.5-86 chr5 50289235 50289462 + 1.25 NA Intergenic MIRb|SINE|MIR 151940 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 233.25-5 chr11 121271275 121271477 + 1.25 NA Intergenic L1MEc|LINE|L1 -21395 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 195-38 chr3 177071272 177071446 + 1.25 NA intron (NM_024665, intron 2 of 15) intron (NM_024665, intron 2 of 15) 125119 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 163.25-17 chr12 62142920 62143056 + 1.25 NA intron (NM_178539, intron 1 of 4) MIR|SINE|MIR 49851 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 183.5-46 chr22 42413606 42413801 + 1.25 NA intron (NM_001371362, intron 3 of 7) AluJr|SINE|Alu 18656 NM_145912 150372 Hs.436677 NM_145912 ENSG00000235568 NFAM1 CNAIP NFAT activating protein with ITAM motif 1 protein-coding 135.25-70 chr4 133626309 133626505 + 1.25 NA Intergenic Intergenic 477113 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 435.75-3 chr3 107557076 107557637 + 1.25 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 34394 NM_020235 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 252.75-16 chr2 197615310 197615607 + 1.25 NA intron (NM_144629, intron 7 of 8) intron (NM_144629, intron 7 of 8) 60129 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 159.5-24 chr14 37107582 37107771 + 1.25 NA intron (NM_001171170, intron 1 of 10) MIR|SINE|MIR -64350 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 218.5-42 chr5 169677392 169677591 + 1.25 NA intron (NR_156756, intron 6 of 52) LTR51|LTR|ERV1 40216 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 188-7 chr12 40497739 40498038 + 1.25 NA intron (NM_173600, intron 59 of 173) L2c|LINE|L2 104494 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 206.75-6 chr11 132258959 132259261 + 1.25 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) -25192 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 162.75-67 chr7 82333658 82333843 + 1.25 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 110027 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 271.25-9 chr3 113423433 113423911 + 1.25 NA intron (NM_001164496, intron 4 of 34) intron (NM_001164496, intron 4 of 34) 8528 NR_107043 102466253 NR_107043 ENSG00000275670 MIR8076 hsa-mir-8076 microRNA 8076 ncRNA 284-5 chr11 77837710 77838076 + 1.25 NA intron (NM_001316960, intron 2 of 4) AluJo|SINE|Alu -3245 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 143.25-52 chr3 194190803 194191099 + 1.25 NA Intergenic Intergenic 15356 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 121-51 chr4 5350789 5350920 + 1.25 NA intron (NM_001306082, intron 5 of 12) L1MA4A|LINE|L1 -173715 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 208.5-6 chr1 241398694 241398948 + 1.25 NA Intergenic Intergenic -41591 NM_001350115 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 197-33 chr22 17958050 17958243 + 1.25 NA intron (NM_015241, intron 1 of 31) intron (NM_015241, intron 1 of 31) 22815 NR_030378 693233 NR_030378 ENSG00000207780 MIR648 MIRN648|hsa-mir-648 microRNA 648 ncRNA 137.5-64 chr2 178645471 178645602 + 1.25 NA intron (NM_001256850, intron 167 of 312) intron (NM_001256850, intron 167 of 312) 122345 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 127-87 chr7 18594447 18594583 + 1.25 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 85245 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 118.75-34 chr15 63264996 63265139 + 1.25 NA 3' UTR (NM_016530, exon 8 of 8) 3' UTR (NM_016530, exon 8 of 8) -12483 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 175-28 chr2 150642793 150643103 + 1.25 NA Intergenic Intergenic 14051 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 114.5-40 chr18 3276468 3276638 + 1.25 NA intron (NM_001144944, intron 2 of 3) intron (NM_001144944, intron 2 of 3) 13834 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 114.25-85 chr5 76711081 76711238 + 1.25 NA Intergenic Intergenic -1244 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 293-20 chr6 130157265 130157590 + 1.25 NA intron (NM_001277185, intron 7 of 10) AluJo|SINE|Alu 58458 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 168.25-50 chr5 56773472 56773698 + 1.25 NA promoter-TSS (NM_001365184) promoter-TSS (NM_001365184) -714 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 362.75 chr11 113974229 113974737 + 1.25 NA promoter-TSS (NR_046363) promoter-TSS (NR_046363) -592 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 183.75-54 chr7 134186692 134186949 + 1.25 NA intron (NM_001365700, intron 11 of 15) intron (NM_001365700, intron 11 of 15) 59480 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 224.75-8 chr15 60122417 60122694 + 1.25 NA Intergenic L1MC5a|LINE|L1 118244 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 279.25-20 chr7 109347424 109347830 + 1.25 NA Intergenic Intergenic -463040 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 132.5-92 chr5 75021628 75021796 + 1.25 NA Intergenic HAL1|LINE|L1 30846 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 131.25-3 chr1 44817027 44817226 + 1.25 NA Intergenic Intergenic 8644 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB domain containing 19 protein-coding 228-47 chr8 124215701 124216030 + 1.25 NA intron (NR_125420, intron 1 of 2) MIRb|SINE|MIR 31533 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 265 chr1 194711500 194711822 + 1.25 NA Intergenic MER70-int|LTR|ERVL 1377054 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 191.75-19 chr18 10511169 10511388 + 1.25 NA Intergenic L4_A_Mam|LINE|RTE-X -14749 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 233.25-29 chr5 141604340 141604618 + 1.25 NA intron (NM_005219, intron 1 of 27) intron (NM_005219, intron 1 of 27) 14521 NM_001314007 1729 Hs.529451 NM_005219 ENSG00000131504 DIAPH1 DFNA1|DIA1|DRF1|LFHL1|SCBMS|hDIA1 diaphanous related formin 1 protein-coding 207.75-36 chr6 163338566 163338849 + 1.25 NA non-coding (NR_033862, exon 4 of 4) non-coding (NR_033862, exon 4 of 4) 8326 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 304.5-8 chr2 169696480 169696762 + 1.25 NA intron (NM_001199288, intron 2 of 3) intron (NM_001199288, intron 2 of 3) 2152 NM_001008489 493911 Hs.745233 NM_001008489 ENSG00000144362 PHOSPHO2 - phosphatase, orphan 2 protein-coding 178-52 chr8 109397552 109397941 + 1.25 NA intron (NM_177531, intron 11 of 77) intron (NM_177531, intron 11 of 77) 35285 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 193.5-4 chr1 198235129 198235320 + 1.25 NA intron (NM_133494, intron 2 of 9) intron (NM_133494, intron 2 of 9) 78226 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 303-5 chr16 10568577 10568970 + 1.25 NA intron (NM_001424, intron 1 of 4) LTR16A1|LTR|ERVL 11825 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 175.75-53 chr9 26265013 26265260 + 1.25 NA Intergenic Intergenic 198461 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 171.5-59 chr4 116124998 116125215 + 1.25 NA Intergenic HAL1b|LINE|L1 -174619 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 237.25-25 chr5 105080685 105080976 + 1.25 NA Intergenic LTR33B|LTR|ERVL -18644 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 166.5-62 chr20 39464465 39464614 + 1.25 NA Intergenic L2a|LINE|L2 -239791 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 142.75-52 chr22 48556990 48557225 + 1.25 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -9720 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 149-59 chr8 133371326 133371489 + 1.25 NA Intergenic Intergenic -74103 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 197.75-3 chr1 151627189 151627423 + 1.25 NA intron (NM_030918, intron 1 of 11) L1MC3|LINE|L1 15256 NM_030918 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 232-15 chr22 29410209 29410483 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21763 NM_145730 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 363.5-2 chr14 74831493 74832120 + 1.25 NA intron (NM_019589, intron 19 of 20) intron (NM_019589, intron 19 of 20) 32028 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 125.75-63 chr5 155623877 155624033 + 1.25 NA Intergenic Intergenic 610200 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 141.5-105 chr7 36529806 36529953 + 1.25 NA intron (NM_001177507, intron 18 of 19) intron (NM_001177507, intron 18 of 19) 70241 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 157.5-60 chr21 30612970 30613216 + 1.25 NA TTS (NM_181602) TTS (NM_181602) 811 NM_181602 337966 Hs.194301 NM_181602 ENSG00000184724 KRTAP6-1 C21orf103|KAP6.1 keratin associated protein 6-1 protein-coding 203-23 chr22 22001934 22002121 + 1.25 NA intron (NR_135291, intron 4 of 6) MER34A|LTR|ERV1 -19240 NM_001282112 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 179.25-37 chr6 43677924 43678156 + 1.25 NA intron (NM_001193343, intron 3 of 4) intron (NM_001193343, intron 3 of 4) 9772 NM_018135 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 138.25-27 chr14 66122585 66122782 + 1.25 NA Intergenic Tigger3a|DNA|TcMar-Tigger -363688 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 157.25-25 chr13 103864310 103864537 + 1.25 NA Intergenic Intergenic 439223 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 412 chr18 2013694 2014296 + 1.25 NA Intergenic Intergenic 557510 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 161.25-59 chr4 154189461 154189666 + 1.25 NA Intergenic UCON31|Unknown|Unknown 302236 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 204.5-38 chr20 53733106 53733396 + 1.25 NA Intergenic Intergenic 124897 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 269.5-22 chr5 33694798 33695457 + 1.25 NA intron (NM_001324512, intron 3 of 21) intron (NM_001324512, intron 3 of 21) 196863 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 211.5-22 chr2 22118431 22118734 + 1.25 NA Intergenic L1ME2|LINE|L1 -407930 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 235.5-7 chr1 217628483 217628740 + 1.25 NA intron (NM_001297754, intron 1 of 5) intron (NM_001297754, intron 1 of 5) 2479 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 285.75-10 chr16 10010991 10011258 + 1.25 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 170943 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 313.5-18 chr8 72275953 72276404 + 1.25 NA Intergenic THE1B-int|LTR|ERVL-MaLR -24544 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 117.25-27 chr14 25568297 25568419 + 1.25 NA Intergenic L1MA2|LINE|L1 -518061 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 259.25-14 chr9 25651973 25652365 + 1.25 NA Intergenic Intergenic 26689 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 175.5-42 chr2 102226157 102226385 + 1.25 NA intron (NM_001351447, intron 7 of 9) intron (NM_001351447, intron 7 of 9) 38957 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 185.25-42 chr5 28670795 28671134 + 1.25 NA Intergenic LTR38|LTR|ERV1 -255906 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 153.75-54 chr3 112038386 112038525 + 1.25 NA Intergenic Intergenic -1163 NR_026734 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 126.25-97 chr9 74616218 74616358 + 1.25 NA intron (NM_001365023, intron 1 of 9) intron (NM_001365023, intron 1 of 9) 754 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 143.5-48 chr2 40062353 40062539 + 1.25 NA intron (NR_038441, intron 2 of 4) MIRb|SINE|MIR 144812 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 152.25-62 chr7 96614698 96614934 + 1.25 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 49522 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 183-53 chr4 146813042 146813371 + 1.25 NA intron (NR_133922, intron 11 of 13) intron (NR_133922, intron 11 of 13) 132658 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 126.5-13 chr10 49778455 49778581 + 1.25 NA Intergenic L1ME3|LINE|L1 -16139 NM_001143996 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 233-29 chr6 57304813 57305026 + 1.25 NA Intergenic Intergenic -9886 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 250.25-23 chrX 71082521 71082758 + 1.25 NA Intergenic AluSc8|SINE|Alu -9213 NM_001256185 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 166.75-55 chr6 93764293 93764483 + 1.25 NA intron (NR_015362, intron 7 of 9) L1MEd|LINE|L1 46085 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 182.25-23 chr2 122199673 122199934 + 1.25 NA Intergenic Intergenic 444152 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 188.25-57 chr9 69360851 69361050 + 1.25 NA intron (NM_001127608, intron 2 of 10) HAL1|LINE|L1 31625 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 382.5-7 chr6 122894507 122895049 + 1.25 NA Intergenic Intergenic -101457 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 213.75-2 chr1 57123639 57123882 + 1.25 NA intron (NM_001365793, intron 4 of 14) intron (NM_001365793, intron 4 of 14) -157620 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 280-10 chr14 82619955 82620272 + 1.25 NA Intergenic L1ME1|LINE|L1 -22519 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 131.25-71 chr5 45342102 45342227 + 1.25 NA intron (NM_021072, intron 5 of 7) HSMAR2|DNA|TcMar-Mariner 354216 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 173.25-59 chr6 47937428 47937583 + 1.25 NA intron (NM_207499, intron 2 of 2) L2a|LINE|L2 131184 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 122-19 chr13 96367102 96367250 + 1.25 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -60053 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 265-14 chr18 4524665 4524999 + 1.25 NA Intergenic L1MA2|LINE|L1 -69525 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 148-16 chr12 67390935 67391086 + 1.25 NA Intergenic Intergenic 51549 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 205.75-37 chr6 146036393 146036700 + 1.25 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 7348 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 121.25-78 chr8 53804765 53805041 + 1.25 NA intron (NM_213619, intron 6 of 12) intron (NM_213619, intron 6 of 12) 38139 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 145.25-75 chr7 31997747 31997910 + 1.25 NA intron (NM_001322059, intron 3 of 17) L4_C_Mam|LINE|RTE-X 72579 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 164.25-16 chr12 23562780 23562969 + 1.25 NA intron (NM_001261414, intron 13 of 16) intron (NM_001261414, intron 13 of 16) 21712 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 187.75-8 chr12 81199111 81199364 + 1.25 NA intron (NM_024560, intron 8 of 15) intron (NM_024560, intron 8 of 15) 40849 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 162.5-66 chr5 35669756 35669913 + 1.25 NA intron (NM_144722, intron 9 of 9) MIR3|SINE|MIR 51971 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 272.5-24 chr8 121897347 121897728 + 1.25 NA Intergenic L2c|LINE|L2 -256097 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 161.75-29 chr20 43468001 43468208 + 1.25 NA Intergenic Intergenic 10208 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 163.5-51 chr3 7514043 7514234 + 1.25 NA intron (NM_000844, intron 7 of 9) MIR|SINE|MIR 21146 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 247.5-21 chr22 43610213 43610493 + 1.25 NA intron (NM_198856, intron 19 of 29) L1ME3B|LINE|L1 94099 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 138.5-100 chr7 134238013 134238238 + 1.25 NA intron (NM_144648, intron 16 of 19) L1MC5a|LINE|L1 78805 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 402.5-3 chr2 59612988 59613338 + 1.25 NA Intergenic L1MB7|LINE|L1 395455 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 221.5-19 chr2 51820239 51820514 + 1.25 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -550272 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 237.75-29 chr20 34444735 34445160 + 1.25 NA intron (NM_001257137, intron 11 of 25) intron (NM_001257137, intron 11 of 25) -21378 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 277.25-15 chr2 199138590 199138843 + 1.25 NA Intergenic L1M4|LINE|L1 319223 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 113.5-45 chr16 6716692 6716863 + 1.25 NA intron (NM_018723, intron 3 of 15) MLT1K|LTR|ERVL-MaLR -57032 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 338.25-8 chr6 125999224 125999621 + 1.25 NA intron (NM_001031712, intron 6 of 12) intron (NM_001031712, intron 6 of 12) 12882 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 198.25-5 chr11 91887511 91887867 + 1.25 NA Intergenic Intergenic -337345 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 279.25-11 chr16 86878662 86878982 + 1.25 NA Intergenic CpG 156731 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 216 chr1 105592746 105593261 + 1.25 NA intron (NR_125955, intron 3 of 3) L2a|LINE|L2 25932 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 192.25-4 chr1 69628897 69629286 + 1.25 NA intron (NM_001366842, intron 1 of 7) L1MC|LINE|L1 59750 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 164.5-77 chr5 179394201 179394457 + 1.25 NA Intergenic Intergenic -48868 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 224.25-18 chr2 28128147 28128432 + 1.25 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 78672 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 116-50 chr4 48991676 48991812 + 1.25 NA intron (NM_001286791, intron 3 of 15) intron (NM_001286791, intron 3 of 15) 5102 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 278.25-5 chr1 240950254 240950845 + 1.25 NA intron (NM_001350116, intron 4 of 16) intron (NM_001350116, intron 4 of 16) -181723 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 230.75-8 chr16 64108024 64108366 + 1.25 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 1013868 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 214-2 chr1 42258045 42258329 + 1.25 NA intron (NM_001198850, intron 4 of 12) intron (NM_001198850, intron 4 of 12) 76768 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 238.5-39 chr8 118349956 118350295 + 1.25 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -238306 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 225.5-2 chr1 81542703 81543040 + 1.25 NA intron (NR_125943, intron 1 of 3) intron (NR_125943, intron 1 of 3) 14831 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 186.5-16 chr12 126036036 126036247 + 1.25 NA Intergenic MER68|LTR|ERVL -52767 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 137-45 chr3 19714068 19714199 + 1.25 NA Intergenic L2c|LINE|L2 220084 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 172-33 chr4 119664672 119664849 + 1.25 NA Intergenic MIRb|SINE|MIR -35956 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 203.5-18 chr18 70323858 70324058 + 1.25 NA intron (NM_004232, intron 1 of 1) intron (NM_004232, intron 1 of 1) -11481 NR_126336 101927481 Hs.633706 NR_126336 ENSG00000266258 LINC01909 - long intergenic non-protein coding RNA 1909 ncRNA 229-13 chr14 83401376 83401691 + 1.25 NA Intergenic MLT1F2|LTR|ERVL-MaLR 758901 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 242-29 chr3 179568859 179569134 + 1.25 NA intron (NM_178042, intron 1 of 13) L1M5|LINE|L1 6070 NM_004301 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 232-25 chr6 141085412 141085658 + 1.25 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 401721 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 233-30 chr6 142657109 142657324 + 1.25 NA Intergenic MIRb|SINE|MIR -19327 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 142.5-17 chr11 74184588 74184743 + 1.25 NA intron (NM_001271593, intron 1 of 13) intron (NM_001271593, intron 1 of 13) 13376 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 177-53 chr7 79205827 79206015 + 1.25 NA intron (NM_001301128, intron 1 of 20) L1MA8|LINE|L1 196933 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 167-23 chr17 58583936 58584308 + 1.25 NA intron (NM_198393, intron 19 of 32) intron (NM_198393, intron 19 of 32) -39794 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 128.75-32 chr18 2049719 2049897 + 1.25 NA Intergenic Intergenic 521697 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 230.5-18 chr15 35422127 35422428 + 1.25 NA intron (NM_080650, intron 5 of 8) intron (NM_080650, intron 5 of 8) -49913 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 230.5-49 chr7 2237356 2237759 + 1.25 NA intron (NM_013393, intron 2 of 2) intron (NM_013393, intron 2 of 2) -4612 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 143-8 chr10 131928429 131928617 + 1.25 NA intron (NM_001291310, intron 3 of 9) intron (NM_001291310, intron 3 of 9) 27515 NM_018461 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 182.75-45 chr5 137596571 137596898 + 1.25 NA Intergenic Intergenic 50915 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 164.5-55 chr3 95679128 95679336 + 1.25 NA intron (NR_077228, intron 2 of 4) intron (NR_077228, intron 2 of 4) 3961 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 193.25-43 chr7 33372437 33372813 + 1.25 NA intron (NM_198428, intron 17 of 22) L1M2|LINE|L1 243061 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 160.25-9 chr11 40010441 40010619 + 1.25 NA Intergenic Intergenic 282600 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 173-50 chr7 117424719 117424872 + 1.25 NA intron (NM_001301821, intron 2 of 12) intron (NM_001301821, intron 2 of 12) 2698 NM_001301822 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 131.25-29 chr12 110909816 110909980 + 1.25 NA TTS (NM_000432) TTS (NM_000432) 10702 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 186.75-46 chr5 21081862 21082034 + 1.25 NA Intergenic L1MA9|LINE|L1 -377532 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 145.5-3 chr1 84180495 84180674 + 1.25 NA intron (NM_001300915, intron 5 of 11) intron (NM_001300915, intron 5 of 11) -1048 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 121-47 chr3 159920223 159920371 + 1.25 NA intron (NR_108088, intron 9 of 9) L1MB4|LINE|L1 -68538 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 153.75-65 chr5 96407096 96407291 + 1.25 NA intron (NM_001177875, intron 9 of 13) L1M5|LINE|L1 24966 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 171.25 chr1 74463983 74464144 + 1.25 NA intron (NM_015978, intron 21 of 24) intron (NM_015978, intron 21 of 24) 19377 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 297.25-12 chr18 78255846 78256210 + 1.25 NA Intergenic MIR|SINE|MIR -262301 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 204.25-23 chr18 4117060 4117241 + 1.25 NA intron (NM_001242761, intron 2 of 11) MLT1B|LTR|ERVL-MaLR -147452 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 203.5-37 chr4 91251750 91251952 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1016820 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 135-51 chr4 26478633 26478788 + 1.25 NA Intergenic Intergenic 11774 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 213.25-24 chr20 41380627 41380915 + 1.25 NA Intergenic Intergenic -13953 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 165.75-75 chr8 120808523 120808692 + 1.25 NA intron (NM_021021, intron 1 of 6) MIRc|SINE|MIR 3439 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 329.75-3 chr13 78616911 78617368 + 1.25 NA non-coding (NR_047001, exon 6 of 6) non-coding (NR_047001, exon 6 of 6) -13587 NM_006237 5457 Hs.654522 NM_006237 ENSG00000152192 POU4F1 BRN3A|Oct-T1|RDC-1|brn-3A POU class 4 homeobox 1 protein-coding 231.75-26 chr5 33687276 33687545 + 1.25 NA intron (NM_001324512, intron 3 of 21) MIRb|SINE|MIR 204580 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 157.5-65 chr3 5000568 5000829 + 1.25 NA Intergenic MIRb|SINE|MIR -20737 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 161-19 chr11 81736258 81736565 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 154425 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 179-20 chr14 52891438 52891641 + 1.25 NA intron (NM_006832, intron 4 of 14) MIR|SINE|MIR 59511 NM_001135000 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 169.75-22 chr14 42717841 42718204 + 1.25 NA Intergenic L1MA9|LINE|L1 1111166 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 153.5-24 chr12 15278344 15278490 + 1.25 NA Intergenic Intergenic -44091 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 300.75-11 chr5 46225860 46226256 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -529678 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 162-48 chr5 148151070 148151318 + 1.25 NA Intergenic Intergenic -17352 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 164.25-51 chr5 165661847 165662023 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR 1191656 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 213-2 chr1 33125490 33125682 + 1.25 NA Intergenic L2a|LINE|L2 43408 NM_001301825 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 138-22 chr15 26747309 26747548 + 1.25 NA intron (NM_001278631, intron 3 of 9) L1MD2|LINE|L1 25638 NM_000814 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 223.5-58 chr4 111031817 111032090 + 1.25 NA Intergenic Intergenic -171306 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 130.75-72 chr8 54652781 54652945 + 1.25 NA Intergenic Intergenic 36767 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 135.5-90 chr6 49425495 49425656 + 1.25 NA Intergenic Intergenic 37678 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 299.25-7 chr3 186495467 186495891 + 1.25 NA Intergenic AluJb|SINE|Alu -2018 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 160.25-58 chr8 118792861 118793043 + 1.25 NA Intergenic MIR3|SINE|MIR 158933 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 127.5-5 chr1 57867664 57867774 + 1.25 NA intron (NM_001353980, intron 3 of 5) MIRb|SINE|MIR 7138 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 193-6 chr1 234005130 234005428 + 1.25 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 100603 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 266.75-4 chr22 22005703 22006179 + 1.25 NA intron (NR_135291, intron 4 of 6) MIRb|SINE|MIR -23154 NM_001282112 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 223.5-50 chr3 14560043 14560307 + 1.25 NA Intergenic AluJr|SINE|Alu -19833 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 148.5-115 chr9 81698987 81699225 + 1.25 NA intron (NR_109772, intron 1 of 3) intron (NR_109772, intron 1 of 3) 9393 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 241.75-13 chr2 88744704 88745106 + 1.25 NA intron (NM_144563, intron 8 of 8) L1PB1|LINE|L1 -20997 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 135.5-35 chr14 63628891 63629060 + 1.25 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 12896 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 206-2 chr1 241330117 241330490 + 1.25 NA intron (NM_001350116, intron 1 of 16) intron (NM_001350116, intron 1 of 16) 25523 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 328.25-3 chr10 98107355 98107772 + 1.25 NA Intergenic L1MB2|LINE|L1 -27061 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 214.5-37 chr3 150242928 150243167 + 1.25 NA Intergenic Intergenic 4347 NR_110167 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 227-16 chr2 55291969 55292204 + 1.25 NA intron (NM_001254943, intron 32 of 33) intron (NM_001254943, intron 32 of 33) 9767 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 185.5-39 chr2 59095352 59095597 + 1.25 NA Intergenic Intergenic -122234 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 122.25-35 chr17 62614407 62614520 + 1.25 NA 3' UTR (NM_001284333, exon 23 of 23) 3' UTR (NM_001284333, exon 23 of 23) -13207 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 164.25-22 chr17 66381365 66381536 + 1.25 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 35404 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 192.75-28 chr3 125209619 125209903 + 1.25 NA intron (NM_001195483, intron 1 of 12) L2c|LINE|L2 1638 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 313.75-9 chr7 54429531 54429859 + 1.25 NA Intergenic Intergenic 98998 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 170.5-29 chr15 44056285 44056672 + 1.25 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 137968 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 158.5-19 chr10 105029245 105029490 + 1.25 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -363151 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 161.75-51 chr6 138938394 138938601 + 1.25 NA intron (NM_031922, intron 8 of 19) intron (NM_031922, intron 8 of 19) 49764 NM_001286612 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 155.25-7 chr10 105505067 105505227 + 1.25 NA Intergenic Intergenic 315186 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 139-9 chr11 77457274 77457456 + 1.25 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 16698 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 235.25-2 chr1 94813867 94814211 + 1.25 NA intron (NR_160783, intron 1 of 3) L1MC5|LINE|L1 6193 NR_160780 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 125.75-64 chr6 23815843 23815976 + 1.25 NA Intergenic L1M5|LINE|L1 -310306 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 136.25-32 chr16 22793270 22793479 + 1.25 NA Intergenic L1ME4a|LINE|L1 -20788 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 146.75-3 chr1 201331202 201331464 + 1.25 NA 3' UTR (NM_000299, exon 15 of 15) 3' UTR (NM_000299, exon 15 of 15) 46347 NM_001276345 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 197.5-53 chr6 45731941 45732408 + 1.25 NA Intergenic Intergenic 205423 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 119.5-82 chr3 144043751 144043953 + 1.25 NA Intergenic L1MC5a|LINE|L1 70771 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 163-26 chr2 213269612 213269793 + 1.25 NA Intergenic L1M5|LINE|L1 14507 NR_161186 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 229-30 chr6 139840971 139841300 + 1.25 NA intron (NR_038399, intron 1 of 2) MER58B|DNA|hAT-Charlie -13715 NR_138541 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 271-10 chr19 30395732 30396202 + 1.25 NA intron (NM_014717, intron 1 of 4) L1MC1|LINE|L1 23583 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 146.5-39 chr18 3485139 3485278 + 1.25 NA Intergenic Intergenic 18958 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 488.75-3 chr6 139999903 140000786 + 1.25 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -9083 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 151.75-36 chr17 75645292 75645484 + 1.25 NA promoter-TSS (NM_001162997) promoter-TSS (NM_001162997) -863 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110|ELN small integral membrane protein 6 protein-coding 179.25-24 chr20 32393139 32393317 + 1.25 NA intron (NM_015338, intron 3 of 11) L1MEc|LINE|L1 34163 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 172.5-38 chr2 197172955 197173144 + 1.25 NA intron (NM_153697, intron 2 of 9) intron (NM_153697, intron 2 of 9) -24942 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 115 chr1 14799718 14799861 + 1.25 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -124340 NM_001370229 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 149.5-14 chr11 99428728 99428948 + 1.25 NA intron (NM_001243271, intron 2 of 20) MER4-int|LTR|ERV1 -127307 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 310.75-11 chr6 56959161 56959649 + 1.25 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 4298 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 251.25-8 chr14 59230900 59231281 + 1.25 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -32351 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 128-48 chr4 115410918 115411125 + 1.25 NA Intergenic Intergenic -297401 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 143.5-78 chr5 13541003 13541175 + 1.25 NA Intergenic Cheshire|DNA|hAT-Charlie 403391 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 190-33 chr21 14857697 14857876 + 1.25 NA intron (NR_146322, intron 1 of 3) MLT1H|LTR|ERVL-MaLR 60882 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 292.75-10 chr3 80204272 80204603 + 1.25 NA Intergenic MER34B-int|LTR|ERV1 -436439 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 155.5-14 chr10 12212809 12212952 + 1.25 NA intron (NM_006023, intron 4 of 12) Tigger4b|DNA|TcMar-Tigger 16692 NM_006023 8872 Hs.412842 NM_006023 ENSG00000151465 CDC123 C10orf7|D123 cell division cycle 123 protein-coding 198.25-29 chr3 152027759 152028027 + 1.25 NA Intergenic L1M2|LINE|L1 -99718 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 159.75-38 chr3 124282171 124282385 + 1.25 NA intron (NM_001024660, intron 5 of 59) intron (NM_001024660, intron 5 of 59) -92054 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 184-53 chr9 29684960 29685279 + 1.25 NA Intergenic Intergenic -471518 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 328.25-15 chr8 114019512 114020035 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -582834 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 247.75-11 chr2 35722887 35723295 + 1.25 NA Intergenic L1MEg|LINE|L1 251686 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 225.5 chr1 27523301 27523604 + 1.25 NA Intergenic MIR3|SINE|MIR -33285 NM_006990 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 139.75-32 chr15 99496747 99496893 + 1.25 NA Intergenic L1ME2|LINE|L1 -68597 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 258.25-24 chr7 89707599 89707867 + 1.25 NA Intergenic L1MA7|LINE|L1 -411667 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 272.5-16 chr5 12378180 12378482 + 1.25 NA Intergenic L1ME1|LINE|L1 -196526 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 114.75-21 chr12 48315560 48315677 + 1.25 NA Intergenic Intergenic -13362 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 206.5-49 chr7 18287768 18288031 + 1.25 NA intron (NM_001321872, intron 2 of 11) MER20B|DNA|hAT-Charlie -2193 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 233.5 chr1 43799824 43800029 + 1.25 NA intron (NM_001270459, intron 3 of 11) intron (NM_001270459, intron 3 of 11) -38696 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 142.5-97 chr8 126091912 126092247 + 1.25 NA Intergenic HAL1b|LINE|L1 -140882 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 372-4 chr18 13306394 13306749 + 1.25 NA intron (NM_181482, intron 2 of 5) Tigger2|DNA|TcMar-Tigger 28466 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 319.75-6 chr5 32903065 32903519 + 1.25 NA Intergenic L1ME3|LINE|L1 -44151 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 249.25-26 chr8 135810917 135811181 + 1.25 NA Intergenic Intergenic 353593 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 186.75-28 chr2 128203783 128204012 + 1.25 NA Intergenic AluSq|SINE|Alu 112697 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 161-50 chr4 146078298 146078511 + 1.25 NA Intergenic Intergenic 43509 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 143-71 chr8 63979529 63979681 + 1.25 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 210175 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 200.75 chr1 4738502 4738792 + 1.25 NA intron (NM_018836, intron 2 of 5) L2|LINE|L2 84038 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 147-43 chr2 197366846 197367025 + 1.25 NA Intergenic Intergenic -56155 NM_001367496 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 135.5-14 chr10 100590490 100590634 + 1.25 NA Intergenic L1MD1|LINE|L1 54619 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 250-11 chr16 63206745 63207115 + 1.25 NA Intergenic Intergenic -1170492 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 170.5-31 chr15 58410516 58410815 + 1.25 NA Intergenic Intergenic -21326 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 417.5 chr1 29747586 29748103 + 1.25 NA Intergenic MER102b|DNA|hAT-Charlie 289768 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 281.75 chr1 248221893 248222186 + 1.25 NA Intergenic Intergenic -16890 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 120-13 chr1 183548519 183548676 + 1.25 NA intron (NM_001331007, intron 19 of 23) intron (NM_001331007, intron 19 of 23) 42007 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 352.75-3 chr19 17013066 17013478 + 1.25 NA intron (NM_015692, intron 3 of 41) AluSx1|SINE|Alu 13538 NM_015692 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 201-46 chr6 64318529 64318852 + 1.25 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 511854 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 204.5-55 chr7 11854670 11854970 + 1.25 NA Intergenic HAL1|LINE|L1 -22622 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 137.5-5 chr1 213111652 213111870 + 1.25 NA intron (NR_146208, intron 3 of 10) intron (NR_146208, intron 3 of 10) 60520 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 148.5-10 chr10 92801562 92801732 + 1.25 NA Intergenic Intergenic -25184 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 143.5-56 chr2 191224107 191224237 + 1.25 NA Intergenic Intergenic -21232 NM_001330238 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 132.75-46 chr16 65705037 65705182 + 1.25 NA Intergenic MIRb|SINE|MIR -128809 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 140.25-86 chr7 46694204 46694367 + 1.25 NA intron (NR_134575, intron 1 of 2) intron (NR_134575, intron 1 of 2) 2837 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 177.5-67 chr9 36468280 36468469 + 1.25 NA Intergenic Intergenic -67176 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 136.5-109 chr8 123938937 123939098 + 1.25 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 87030 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 253.5-23 chr2 33526207 33526483 + 1.25 NA intron (NM_015376, intron 8 of 16) intron (NM_015376, intron 8 of 16) 12470 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 196.25-34 chr2 121078601 121078851 + 1.25 NA Intergenic SSU-rRNA_Hsa|rRNA|rRNA 206476 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 164.75-15 chr11 82545655 82545958 + 1.25 NA Intergenic Intergenic -141893 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 173.5-42 chr2 57814192 57814357 + 1.25 NA Intergenic L1MEg|LINE|L1 -93377 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 177.75-12 chr13 30645997 30646236 + 1.25 NA intron (NM_005800, intron 6 of 8) intron (NM_005800, intron 6 of 8) 11901 NM_001321534 10208 Hs.533831 NM_005800 ENSG00000132952 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 295.5-4 chr11 84660653 84660941 + 1.25 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 60145 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 186.75-38 chr4 43108573 43108847 + 1.25 NA Intergenic Intergenic 215444 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 227-11 chr14 58187397 58187740 + 1.25 NA Intergenic L1MB7|LINE|L1 -12581 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 140.75-38 chr20 47527306 47527622 + 1.25 NA intron (NM_181659, intron 1 of 22) L1ME1|LINE|L1 25577 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 278.75 chr10 11963848 11964198 + 1.25 NA exon (NM_015542, exon 11 of 22) exon (NM_015542, exon 11 of 22) -69313 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 136.25-81 chr8 107508306 107508516 + 1.25 NA Intergenic Intergenic -10493 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 148.25-4 chr1 171923833 171923989 + 1.25 NA intron (NM_001278252, intron 2 of 14) L1PA17|LINE|L1 59719 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 195-34 chr21 30446001 30446324 + 1.25 NA Intergenic MIR|SINE|MIR 5883 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 249-39 chr7 127712048 127712359 + 1.25 NA intron (NM_014390, intron 9 of 23) AluJo|SINE|Alu 60009 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 174-51 chr8 64922701 64922871 + 1.25 NA Intergenic L1MA8|LINE|L1 -124049 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 157.75-82 chr9 32672858 32673079 + 1.25 NA Intergenic Intergenic -37299 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 132-68 chr6 136389782 136389901 + 1.25 NA intron (NM_001198611, intron 3 of 16) intron (NM_001198611, intron 3 of 16) 77034 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 157.75-11 chr10 59359704 59359891 + 1.25 NA intron (NM_001347852, intron 1 of 12) MER5B|DNA|hAT-Charlie 2752 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 156.5-4 chr1 178384144 178384292 + 1.25 NA intron (NM_004841, intron 1 of 15) intron (NM_004841, intron 1 of 15) 42767 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 146-20 chr17 55072422 55072682 + 1.25 NA intron (NM_178509, intron 12 of 17) intron (NM_178509, intron 12 of 17) -103767 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 196-19 chr16 80543361 80543622 + 1.25 NA intron (NM_130897, intron 2 of 3) L2a|LINE|L2 2498 NM_130897 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 205.25-47 chr9 95208429 95208611 + 1.25 NA intron (NM_001243744, intron 4 of 13) L1MC1|LINE|L1 108734 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 288.75-10 chr2 179893907 179894354 + 1.25 NA Intergenic Intergenic -32518 NM_001352808 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 145.75-78 chr9 117889631 117889860 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 185342 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 162.75-74 chr8 123206662 123206818 + 1.25 NA intron (NM_001288587, intron 2 of 3) MIRb|SINE|MIR -3997 NR_024479 100131726 Hs.660862 NR_024479 ENSG00000204949 FAM83A-AS1 HCCC11|HCCC11_v1|HCCC11_v2 FAM83A antisense RNA 1 ncRNA 146-33 chr2 181490640 181490935 + 1.25 NA intron (NM_000885, intron 10 of 27) MIR|SINE|MIR 33401 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 217.5-3 chr1 196024454 196024821 + 1.25 NA Intergenic Intergenic 64078 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 230.5-22 chr16 70757313 70757607 + 1.25 NA intron (NR_034083, intron 2 of 5) intron (NR_034083, intron 2 of 5) 2365 NR_034083 100130894 Hs.678899 NR_034083 ENSG00000214353 VAC14-AS1 - VAC14 antisense RNA 1 ncRNA 156.5-18 chr13 92939101 92939247 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -106167 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 153-4 chr10 50323617 50323749 + 1.25 NA intron (NM_147156, intron 8 of 10) intron (NM_147156, intron 8 of 10) -75073 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 178.75-44 chr4 65063543 65063987 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -59265 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 199.25-24 chr20 49162311 49162532 + 1.25 NA intron (NM_001322928, intron 2 of 14) intron (NM_001322928, intron 2 of 14) 25949 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 225.5-6 chr1 161307843 161308175 + 1.25 NA intron (NM_001315491, intron 1 of 5) L1ME3G|LINE|L1 1959 NM_001315491 4359 Hs.591486 NM_000530 ENSG00000158887 MPZ CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0 myelin protein zero protein-coding 176-32 chr3 185524061 185524263 + 1.25 NA intron (NM_139248, intron 4 of 9) intron (NM_139248, intron 4 of 9) -25127 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 274-15 chr2 101580801 101581104 + 1.25 NA Intergenic Intergenic -105840 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 118.75-16 chr11 75255984 75256087 + 1.25 NA Intergenic L1ME1|LINE|L1 15261 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 151.75-6 chr1 244940191 244940379 + 1.25 NA Intergenic Intergenic -29584 NM_032328 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 113-92 chr7 4538035 4538181 + 1.25 NA Intergenic L1MB5|LINE|L1 -144187 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 284.25-17 chr4 23960827 23961114 + 1.25 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -70923 NR_148984 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 316.5-12 chr5 44567134 44567421 + 1.25 NA Intergenic Intergenic -56995 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 235.5-36 chr3 147262738 147262999 + 1.25 NA Intergenic Intergenic 129562 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 292.75-11 chr5 23845649 23845888 + 1.25 NA Intergenic L1MA4A|LINE|L1 -105580 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 169-29 chr2 175350973 175351131 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 -169342 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 140.25-79 chr6 92763249 92763376 + 1.25 NA Intergenic Intergenic 656247 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 251.75-13 chr6 36100473 36100828 + 1.25 NA intron (NM_001315, intron 9 of 11) intron (NM_001315, intron 9 of 11) -29863 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 156.25-4 chr1 223537515 223537750 + 1.25 NA Intergenic Intergenic 128069 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 197.5-41 chr20 63383371 63383598 + 1.25 NA Intergenic Intergenic -22088 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 133.5-46 chr2 23809157 23809274 + 1.25 NA intron (NR_125717, intron 19 of 28) intron (NR_125717, intron 19 of 28) 117908 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 123.5-112 chr8 134176640 134176784 + 1.25 NA Intergenic Intergenic 290216 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 209.75-39 chr6 100612356 100612624 + 1.25 NA intron (NM_006828, intron 30 of 41) intron (NM_006828, intron 30 of 41) -148815 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 307.75-8 chr5 168476898 168477387 + 1.25 NA Intergenic MER72|LTR|ERV1 -9329 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 120.5-61 chr21 33708792 33708936 + 1.25 NA intron (NM_001001132, intron 1 of 29) L1ME1|LINE|L1 66363 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 491.5 chr6 70306586 70307457 + 1.25 NA Intergenic L2a|LINE|L2 -3937 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 182-7 chr10 118100942 118101137 + 1.25 NA TTS (NR_026941) TTS (NR_026941) -54098 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 117.75-78 chr7 83710023 83710269 + 1.25 NA Intergenic L1MCa|LINE|L1 -61007 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 244-4 chr10 69552456 69552796 + 1.25 NA Intergenic Intergenic 20796 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 203.25-2 chr1 45570154 45570416 + 1.25 NA TTS (NM_001202413) TTS (NM_001202413) -13703 NM_001195193 4678 Hs.319334 NM_002482 ENSG00000132780 NASP FLB7527|HMDRA1|PRO1999 nuclear autoantigenic sperm protein protein-coding 184.25-9 chr11 89521639 89521947 + 1.25 NA intron (NM_001143837, intron 2 of 20) L1PA16|LINE|L1 -29574 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 233.75-33 chr7 44090457 44090775 + 1.25 NA Intergenic Intergenic -8076 NR_104299 27434 Hs.596982 NM_013284 ENSG00000122678 POLM Pol Mu|Tdt-N DNA polymerase mu protein-coding 213.5-7 chr11 11205318 11205623 + 1.25 NA Intergenic Intergenic 147780 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 166.75-13 chr11 82229108 82229317 + 1.25 NA intron (NR_120571, intron 3 of 7) MIR3|SINE|MIR 174701 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 168.75 chr1 153531344 153531522 + 1.25 NA Intergenic L1ME3E|LINE|L1 4558 NM_014624 6277 Hs.275243 NM_014624 ENSG00000197956 S100A6 2A9|5B10|CABP|CACY|PRA|S10A6 S100 calcium binding protein A6 protein-coding 136.5-111 chr8 136133662 136133826 + 1.25 NA Intergenic Intergenic -397054 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 293-16 chr5 63605886 63606286 + 1.25 NA Intergenic L1MA4|LINE|L1 356206 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 284.5-9 chr12 39136079 39136560 + 1.25 NA Intergenic Intergenic -230728 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 156-49 chr4 111597015 111597191 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -548351 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 244-8 chr14 69993370 69993697 + 1.25 NA intron (NM_001034852, intron 6 of 11) intron (NM_001034852, intron 6 of 11) 15400 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 279.5-9 chr3 144185624 144186035 + 1.25 NA Intergenic FLAM_C|SINE|Alu 212748 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 285.25-24 chr8 82909514 82909893 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -2401 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 171-43 chr4 94257097 94257416 + 1.25 NA intron (NM_001254949, intron 1 of 15) intron (NM_001254949, intron 1 of 15) 3947 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 206.25-41 chr9 91919985 91920255 + 1.25 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 30108 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 197-6 chr10 96128447 96128751 + 1.25 NA Intergenic Intergenic -1116 NM_001278526 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 210-14 chr17 39321526 39321937 + 1.25 NA intron (NM_001370209, intron 2 of 13) AluSq2|SINE|Alu 24331 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 201.75-2 chr1 180506381 180506590 + 1.25 NA Intergenic Intergenic -3908 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 217.5-51 chr8 130318381 130318589 + 1.25 NA intron (NM_001362925, intron 3 of 29) MIRb|SINE|MIR -21952 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 157.75-76 chr8 110309044 110309192 + 1.25 NA Intergenic Intergenic -333347 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 207.75-29 chr3 71152698 71152917 + 1.25 NA intron (NR_146142, intron 6 of 19) MIRb|SINE|MIR -20610 NM_001349343 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 154.25-9 chr10 83636539 83636784 + 1.25 NA Intergenic L2a|LINE|L2 40428 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 157.5-2 chr1 50884575 50884713 + 1.25 NA intron (NM_007051, intron 1 of 18) L1M1|LINE|L1 75623 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 195.25-36 chr5 51211631 51211932 + 1.25 NA Intergenic Intergenic 171551 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 289.25-2 chr1 79171108 79171396 + 1.25 NA Intergenic Intergenic -164522 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 141.25-76 chr9 35379331 35379545 + 1.25 NA intron (NM_006377, intron 16 of 38) AluSx1|SINE|Alu -27317 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 172.75-15 chr18 12282572 12282822 + 1.25 NA Intergenic MER21C|LTR|ERVL -24972 NM_001303524 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 183.5-41 chr2 228241110 228241304 + 1.25 NA Intergenic L1MA8|LINE|L1 -59520 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 134.75-46 chr22 26408341 26408548 + 1.25 NA Intergenic LTR16C|LTR|ERVL -20816 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 221.75-25 chr7 68094935 68095221 + 1.25 NA Intergenic Intergenic 74825 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 170-53 chr8 128279374 128279545 + 1.25 NA Intergenic L1PB1|LINE|L1 129343 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 169.5-38 chr2 15234202 15234435 + 1.25 NA intron (NR_052013, intron 46 of 50) intron (NR_052013, intron 46 of 50) 327016 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 273-27 chr7 83526535 83527009 + 1.25 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 114659 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 155.75-42 chr3 192475971 192476170 + 1.25 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -38952 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 202.75-15 chr20 47013871 47014109 + 1.25 NA intron (NM_172110, intron 4 of 13) intron (NM_172110, intron 4 of 13) 119147 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 198.75-28 chr3 46916553 46916772 + 1.25 NA Intergenic L1MB8|LINE|L1 34413 NM_001184744 5745 Hs.1019 NM_000316 ENSG00000160801 PTH1R EKNS|PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 199.75 chr1 218380891 218381211 + 1.25 NA intron (NR_138149, intron 2 of 7) intron (NR_138149, intron 2 of 7) -35373 NR_046268 728463 Hs.568469 NR_046268 ENSG00000232480 TGFB2-AS1 - TGFB2 antisense RNA 1 (head to head) ncRNA 300.5-6 chr15 68322420 68322776 + 1.25 NA intron (NM_001004439, intron 18 of 29) AluSx1|SINE|Alu 44853 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 192.25-31 chr5 78489269 78489529 + 1.25 NA intron (NM_005779, intron 4 of 4) intron (NM_005779, intron 4 of 4) 128782 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 116.5-75 chr20 58878277 58878378 + 1.25 NA intron (NR_126334, intron 3 of 4) intron (NR_126334, intron 3 of 4) -10086 NR_132273 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 188.25-29 chr22 25720847 25721169 + 1.25 NA intron (NM_001362778, intron 18 of 19) intron (NM_001362778, intron 18 of 19) -21180 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 273.25-2 chr14 86835928 86836176 + 1.25 NA Intergenic L1MA4A|LINE|L1 -69726 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 222.75-23 chr2 182722644 182722965 + 1.25 NA intron (NR_073367, intron 5 of 22) AluSz|SINE|Alu 6547 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 312.5-15 chr9 11291898 11292202 + 1.25 NA Intergenic L1PA15|LINE|L1 678844 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 189.5-29 chr2 127298571 127298779 + 1.25 NA TTS (NM_006609) TTS (NM_006609) -4499 NM_000122 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 191.25-25 chr15 70566532 70566842 + 1.25 NA Intergenic Intergenic 19919 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 263.5-21 chr3 97170320 97170692 + 1.25 NA intron (NM_001080448, intron 3 of 17) AluSx|SINE|Alu -269101 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 172.75-34 chr5 179837089 179837328 + 1.25 NA TTS (NM_016175) TTS (NM_016175) 16303 NM_003900 8878 Hs.587290 NM_003900 ENSG00000161011 SQSTM1 A170|DMRV|FTDALS3|NADGP|OSIL|PDB3|ZIP3|p60|p62|p62B sequestosome 1 protein-coding 168-5 chr1 114076593 114076781 + 1.25 NA Intergenic MIRb|SINE|MIR 75753 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 119.75-93 chrX 87748316 87748634 + 1.25 NA Intergenic Intergenic 230673 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 288.25-15 chr4 33247443 33247712 + 1.25 NA Intergenic Intergenic 792316 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 125-92 chr8 16063129 16063268 + 1.25 NA Intergenic MSTB|LTR|ERVL-MaLR 123074 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 146.5-64 chr3 189662717 189662896 + 1.25 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 31417 NM_001114978 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 169.25-43 chr4 91264883 91265103 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1012309 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 166.75-12 chr11 23225692 23225847 + 1.25 NA Intergenic Intergenic 193421 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 212-13 chr14 84438143 84438476 + 1.25 NA Intergenic Intergenic -833623 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 116-70 chr8 29494564 29494766 + 1.25 NA Intergenic MIRb|SINE|MIR -143981 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 125-28 chr15 37728417 37728721 + 1.25 NA Intergenic Intergenic -206038 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 161.5-83 chr8 86754936 86755075 + 1.25 NA Intergenic Intergenic -11330 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 257-12 chr4 76360870 76361214 + 1.25 NA intron (NM_001042784, intron 12 of 23) MSTA|LTR|ERVL-MaLR 46263 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 501.5 chr12 10680292 10680989 + 1.25 NA Intergenic Intergenic -6588 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 311-12 chr4 107782642 107783237 + 1.25 NA Intergenic Intergenic -41626 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 369.5 chr1 17564641 17565109 + 1.25 NA intron (NR_137287, intron 1 of 29) intron (NR_137287, intron 1 of 29) -15678 NM_001319837 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 196.25-52 chr4 108205167 108205450 + 1.25 NA Intergenic Intergenic 33188 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 217.25-20 chr3 48671151 48671425 + 1.25 NA Intergenic Intergenic 7520 NR_111921 102724368 Hs.663571 NR_111921 ENSG00000228350 LINC02585 CELSR3-AS1 long intergenic non-protein coding RNA 2585 ncRNA 154-42 chr20 5966167 5966310 + 1.25 NA intron (NM_182802, intron 8 of 18) HAL1ME|LINE|L1 15586 NM_001281521 84515 Hs.597484 NM_032485 ENSG00000125885 MCM8 C20orf154|POF10|dJ967N21.5 minichromosome maintenance 8 homologous recombination repair factor protein-coding 168-70 chrX 39098869 39099274 + 1.25 NA Intergenic Intergenic 228291 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 210.5-20 chr15 97242803 97243099 + 1.25 NA Intergenic L1MA6|LINE|L1 278860 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 155.5-15 chr10 62991592 62991858 + 1.25 NA Intergenic MIRb|SINE|MIR -141522 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 175.75-51 chr8 135397782 135398058 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie -59536 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 198.25-39 chr5 128291714 128291926 + 1.25 NA intron (NM_001999, intron 48 of 64) intron (NM_001999, intron 48 of 64) 208054 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 163.75-45 chr3 125491034 125491211 + 1.25 NA intron (NM_003794, intron 5 of 13) intron (NM_003794, intron 5 of 13) 29080 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 201-9 chr11 9995345 9995650 + 1.25 NA intron (NM_030962, intron 9 of 39) intron (NM_030962, intron 9 of 39) 156355 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 199.25-15 chr14 86528610 86528899 + 1.25 NA Intergenic Intergenic -377024 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 184-29 chr3 29428437 29428654 + 1.25 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 147233 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 127-70 chr4 71443553 71443724 + 1.25 NA intron (NM_003759, intron 5 of 22) intron (NM_003759, intron 5 of 22) 104585 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 153-11 chr16 82619868 82620101 + 1.25 NA Intergenic Intergenic -6985 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 361.25 chr12 89651971 89652386 + 1.25 NA intron (NM_001001323, intron 2 of 21) L2a|LINE|L2 56660 NM_001366532 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 255-11 chr15 66622779 66623172 + 1.25 NA intron (NR_110372, intron 1 of 4) L1ME4c|LINE|L1 40785 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 269.5-33 chr9 76089627 76090025 + 1.25 NA intron (NR_120409, intron 7 of 19) intron (NR_120409, intron 7 of 19) 199153 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 212-36 chr5 29926114 29926331 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR 45662 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 194.75-32 chr4 62554610 62554836 + 1.25 NA Intergenic L1PB3|LINE|L1 -392958 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 120-33 chr15 54402088 54402189 + 1.25 NA intron (NM_001329919, intron 17 of 31) intron (NM_001329919, intron 17 of 31) 389490 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 279-4 chr1 204917280 204917681 + 1.25 NA intron (NM_001160332, intron 1 of 27) L1MC5|LINE|L1 -26746 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 195.75-30 chr3 112134631 112134837 + 1.25 NA non-coding (NR_157393, exon 1 of 1) non-coding (NR_157393, exon 1 of 1) 1311 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 130-50 chr3 84674705 84674843 + 1.25 NA intron (NR_033860, intron 16 of 20) LTR52-int|LTR|ERVL 194801 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 121.25-81 chr8 119450748 119450882 + 1.25 NA Intergenic Intergenic 34369 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 196-18 chr15 60144753 60145097 + 1.25 NA Intergenic L1MEg|LINE|L1 140614 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 158-48 chr4 134732340 134732559 + 1.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR 308581 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 257-11 chr22 42285572 42285868 + 1.25 NA Intergenic AluJo|SINE|Alu -1793 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|DDVIBA|SPBP|TCF-20 transcription factor 20 protein-coding 131.5-57 chr3 69701856 69702021 + 1.25 NA Intergenic Intergenic -37526 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 170.25-44 chr21 31445082 31445281 + 1.25 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -100827 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 199.75-38 chr6 123555911 123556126 + 1.25 NA intron (NM_001256020, intron 2 of 8) intron (NM_001256020, intron 2 of 8) 80932 NM_006073 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 150.25-78 chr8 132120002 132120185 + 1.25 NA TTS (NM_004519) TTS (NM_004519) -14828 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 273.75 chr1 46727214 46727500 + 1.25 NA Intergenic L1MEc|LINE|L1 -8243 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 230.5-42 chr5 78443309 78443605 + 1.25 NA intron (NM_004866, intron 6 of 8) intron (NM_004866, intron 6 of 8) 82840 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 227.5-23 chr17 21867265 21867534 + 1.25 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 174876 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 221.75-19 chr4 55065981 55066235 + 1.25 NA Intergenic Intergenic 59487 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 272.75 chr1 105456315 105456741 + 1.25 NA Intergenic Intergenic 162407 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 195.75-6 chr10 62144676 62145086 + 1.25 NA Intergenic L1ME3|LINE|L1 95524 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 316.5-16 chr8 81741946 81742427 + 1.25 NA intron (NM_152284, intron 1 of 4) intron (NM_152284, intron 1 of 4) 9738 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 123-73 chrX 46250815 46250929 + 1.25 NA Intergenic MER119|DNA|hAT-Charlie 76802 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 284-14 chr4 18297334 18297673 + 1.25 NA Intergenic L1ME1|LINE|L1 -275628 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 178.75-50 chr5 150036324 150036514 + 1.25 NA intron (NM_014983, intron 11 of 19) Tigger4a|DNA|TcMar-Tigger 35680 NM_001366501 22993 Hs.719189 NM_014983 ENSG00000113716 HMGXB3 HMGX3|SMF HMG-box containing 3 protein-coding 169.5-79 chr8 11205293 11205462 + 1.25 NA Intergenic Intergenic -3544 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 207.75-2 chr1 171772912 171773183 + 1.25 NA Intergenic L1MB2|LINE|L1 -8613 NM_001007239 51603 Hs.494705 NM_014955 ENSG00000010165 EEF1AKNMT 5630401D24Rik|CGI-01|DFNB26|DFNB26M|KIAA0859|METTL13|feat eEF1A lysine and N-terminal methyltransferase protein-coding 245-20 chr3 104045188 104045410 + 1.25 NA Intergenic Intergenic -521183 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 190.25-8 chr10 14004576 14005013 + 1.25 NA intron (NM_018027, intron 2 of 24) (AATAGTA)n|Simple_repeat|Simple_repeat 3756 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 163.75-12 chr11 27452703 27452952 + 1.25 NA intron (NM_018490, intron 1 of 17) AluY|SINE|Alu -18904 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 143-60 chr5 145970490 145970710 + 1.25 NA intron (NM_152550, intron 2 of 9) MSTD|LTR|ERVL-MaLR 34022 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 113.5-57 chr2 71522686 71522821 + 1.25 NA intron (NM_001130985, intron 12 of 54) intron (NM_001130985, intron 12 of 54) 56054 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 218.5-37 chr4 82889497 82889830 + 1.25 NA intron (NM_016211, intron 1 of 24) intron (NM_016211, intron 1 of 24) 1490 NM_001077207 22872 Hs.370024 NM_014933 ENSG00000138674 SEC31A ABP125|ABP130|HSPC275|HSPC334|SEC31L1 SEC31 homolog A, COPII coat complex component protein-coding 214.25-26 chr3 44975332 44975537 + 1.25 NA promoter-TSS (NM_015004) promoter-TSS (NM_015004) 740 NM_001349376 51304 Hs.61430 NM_016598 ENSG00000163812 ZDHHC3 DHHC-3|DHHC3|GODZ|ZNF373 zinc finger DHHC-type containing 3 protein-coding 152.5-33 chr14 67697311 67697652 + 1.25 NA Intergenic MIR|SINE|MIR -1717 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 246.75-7 chr12 113473974 113474354 + 1.25 NA intron (NR_126425, intron 1 of 1) intron (NR_126425, intron 1 of 1) 2161 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 267-13 chr2 79014864 79015144 + 1.25 NA Intergenic LTR88c|LTR|Gypsy? -10698 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 169.5-69 chr6 43690594 43690841 + 1.25 NA Intergenic L1ME3A|LINE|L1 -2905 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 285-14 chr3 171104656 171105001 + 1.25 NA intron (NM_001161566, intron 18 of 29) intron (NM_001161566, intron 18 of 29) 1931 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 244.5-29 chr4 131994428 131994730 + 1.25 NA Intergenic Intergenic 229741 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 264.25-7 chr22 24324872 24325160 + 1.25 NA intron (NM_015330, intron 6 of 16) intron (NM_015330, intron 6 of 16) -17092 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 257-7 chr18 13896627 13896885 + 1.25 NA intron (NM_001291911, intron 1 of 1) L1M5|LINE|L1 18780 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 180.75-15 chr11 34288560 34288835 + 1.25 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 69313 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 278-28 chr8 35573931 35574273 + 1.25 NA intron (NM_001322818, intron 3 of 16) intron (NM_001322818, intron 3 of 16) 29710 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 135.5-59 chr2 226188968 226189118 + 1.25 NA Intergenic L2c|LINE|L2 46249 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 185.5-31 chr15 98361164 98361358 + 1.25 NA intron (NR_146567, intron 1 of 2) L1M5|LINE|L1 -29703 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 210.25-45 chr7 99617973 99618296 + 1.25 NA intron (NM_001350985, intron 1 of 5) intron (NM_001350985, intron 1 of 5) 1188 NM_001350985 221785 Hs.446297 NM_145115 ENSG00000197037 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 173-39 chr3 37032832 37033010 + 1.25 NA intron (NM_001167617, intron 13 of 18) intron (NM_001167617, intron 13 of 18) 39571 NM_001354623 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 143-45 chr3 1495888 1496005 + 1.25 NA Intergenic Intergenic 402922 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 241.5-3 chr10 50877000 50877407 + 1.25 NA intron (NM_001198818, intron 1 of 13) intron (NM_001198818, intron 1 of 13) 8424 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 231.5-36 chr5 4732128 4732448 + 1.25 NA Intergenic Intergenic -41193 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 220-21 chr22 34805837 34806374 + 1.25 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 191811 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 186.25-22 chr17 57096340 57096548 + 1.25 NA intron (NM_001370427, intron 1 of 11) intron (NM_001370427, intron 1 of 11) 955 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 177.75-6 chr11 78367414 78367633 + 1.25 NA intron (NM_080491, intron 1 of 9) MER102b|DNA|hAT-Charlie -25643 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 268.25-5 chr19 38934361 38934642 + 1.25 NA Intergenic AluSz|SINE|Alu 3547 NM_021107 6183 Hs.411125 NM_021107 ENSG00000128626 MRPS12 MPR-S12|MT-RPS12|RPMS12|RPS12|RPSM12 mitochondrial ribosomal protein S12 protein-coding 148.5-62 chr3 111026333 111026553 + 1.25 NA Intergenic Tigger4a|DNA|TcMar-Tigger 43516 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 196.25-41 chr21 18215757 18215951 + 1.25 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -28979 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 223.25-24 chr6 96534582 96534792 + 1.25 NA intron (NM_015323, intron 7 of 18) intron (NM_015323, intron 7 of 18) 12881 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 195-48 chr6 42874650 42874841 + 1.25 NA Intergenic AluSx1|SINE|Alu -4871 NM_001366481 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 159.75-29 chr2 174530170 174530331 + 1.25 NA Intergenic MER44C|DNA|TcMar-Tigger 27822 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 173.75-30 chr3 109450213 109450582 + 1.25 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 40407 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 185.75-41 chr3 33958911 33959098 + 1.25 NA Intergenic Intergenic 160374 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 315-12 chr3 37846887 37847205 + 1.25 NA intron (NR_110531, intron 1 of 3) L1MC4a|LINE|L1 14734 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 132 chr1 108769585 108769788 + 1.25 NA intron (NM_007269, intron 6 of 18) intron (NM_007269, intron 6 of 18) 23012 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 118.5 chr1 3447004 3447165 + 1.25 NA Intergenic L1MEc|LINE|L1 -7581 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 218-6 chr10 47155877 47156240 + 1.25 NA Intergenic L1M5|LINE|L1 -144139 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 155.75-31 chr21 34510386 34510573 + 1.25 NA intron (NM_000219, intron 2 of 3) L2a|LINE|L2 836 NM_001270403 3753 Hs.121495 NM_000219 ENSG00000180509 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding 167.5-50 chr3 9126011 9126234 + 1.25 NA intron (NM_014850, intron 1 of 21) Charlie2a|DNA|hAT-Charlie -66371 NR_121663 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 236-23 chr20 46105409 46105688 + 1.25 NA Intergenic MIR|SINE|MIR -12766 NM_001362758 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 202.25-40 chr8 139175897 139176164 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -261989 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 191-25 chr2 82758163 82758470 + 1.25 NA Intergenic Intergenic -98487 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 165.25-10 chr11 58246797 58247006 + 1.25 NA Intergenic L1PA13|LINE|L1 -17983 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 203.25-27 chr2 45597894 45598096 + 1.25 NA intron (NM_018079, intron 4 of 20) intron (NM_018079, intron 4 of 20) 13272 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 233.25-4 chr11 7245700 7245976 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR -6066 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 403.25-3 chr13 92459303 92459861 + 1.25 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -30581 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 219.75-18 chr2 138850980 138851241 + 1.25 NA Intergenic Intergenic -46214 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 168.25-57 chr7 24839736 24839927 + 1.25 NA intron (NR_104111, intron 13 of 21) AluSz|SINE|Alu 52790 NM_145320 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 196-40 chr6 143358378 143358723 + 1.25 NA Intergenic L1MEc|LINE|L1 84127 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 274.5-17 chr2 76506353 76506761 + 1.25 NA Intergenic Intergenic -479408 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 164.25-4 chr1 86151775 86151998 + 1.25 NA intron (NM_152890, intron 1 of 59) intron (NM_152890, intron 1 of 59) 4585 NR_146345 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 257.25-3 chr1 93703284 93703547 + 1.25 NA intron (NM_001261408, intron 3 of 13) AluJr|SINE|Alu -21578 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 132.25-7 chr10 32144452 32144651 + 1.25 NA Intergenic AluJr|SINE|Alu -88126 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 221.5-23 chr20 25664584 25664901 + 1.25 NA intron (NR_126465, intron 2 of 3) L1MA4|LINE|L1 22197 NM_001290261 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 202.25-31 chr5 16204344 16204663 + 1.25 NA Intergenic Intergenic 24262 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 250.75-6 chr14 92610534 92610757 + 1.25 NA intron (NM_024832, intron 3 of 9) intron (NM_024832, intron 3 of 9) 34411 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 176.75-38 chr4 104809835 104810165 + 1.25 NA Intergenic L1MA3|LINE|L1 -315106 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 153-47 chr7 8591036 8591251 + 1.25 NA intron (NM_152745, intron 2 of 2) MIR|SINE|MIR 157534 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 288.5-5 chr14 62594452 62594941 + 1.25 NA Intergenic L1MC5|LINE|L1 450762 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 160.75-26 chr16 50953868 50954001 + 1.25 NA intron (NR_039672, intron 2 of 6) L2a|LINE|L2 -63824 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 165.5-19 chr12 93802314 93802463 + 1.25 NA intron (NM_001320100, intron 2 of 2) intron (NM_001320100, intron 2 of 2) -64565 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 168-64 chr8 73607337 73607522 + 1.25 NA intron (NM_001164384, intron 7 of 10) intron (NM_001164384, intron 7 of 10) 139411 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 227.75-14 chr21 26979219 26979510 + 1.25 NA Intergenic AluJo|SINE|Alu -12276 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 123.5-56 chr2 237531990 237532235 + 1.25 NA intron (NM_001281473, intron 7 of 12) intron (NM_001281473, intron 7 of 12) 21181 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 197.75-44 chr6 138123862 138124187 + 1.25 NA Intergenic L1PA14|LINE|L1 -16605 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 133-48 chr4 32029762 32030053 + 1.25 NA intron (NR_125936, intron 1 of 2) MER65D|LTR|ERV1 -7485 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 234.5-19 chr19 30396948 30397296 + 1.25 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 24738 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 161.25-65 chr5 108887059 108887248 + 1.25 NA intron (NR_146155, intron 8 of 19) intron (NR_146155, intron 8 of 19) -37453 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 117.25-78 chr6 39660576 39660780 + 1.25 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 64730 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 134.5-68 chr4 47190227 47190388 + 1.25 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 158740 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 209-19 chr22 26091598 26091867 + 1.25 NA Intergenic MIR|SINE|MIR -77730 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 362-4 chr5 129072272 129072639 + 1.25 NA Intergenic Intergenic -22294 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 189.25-17 chr16 85773238 85773548 + 1.25 NA Intergenic AluJb|SINE|Alu -19022 NR_135193 101928557 Hs.662217 NR_135193 ENSG00000270159 LOC101928557 - uncharacterized LOC101928557 ncRNA 207-10 chr11 111697317 111697621 + 1.25 NA intron (NM_015191, intron 4 of 14) MIRb|SINE|MIR 68920 NM_181699 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 154.25-3 chr1 106325741 106325997 + 1.25 NA Intergenic MSTB|LTR|ERVL-MaLR -297616 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 179.75-29 chr20 22311083 22311323 + 1.25 NA Intergenic Charlie23a|DNA|hAT-Charlie -28402 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 264.5-11 chr15 74705804 74706152 + 1.25 NA Intergenic AluSg4|SINE|Alu -9954 NM_001142443 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 299-5 chr11 105767701 105767983 + 1.25 NA intron (NR_046356, intron 3 of 16) MIR|SINE|MIR 157136 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 171-62 chr9 31986177 31986512 + 1.25 NA Intergenic Intergenic -398259 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 160.5-57 chr4 172051894 172052130 + 1.25 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -238405 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 182-35 chr3 141004829 141005050 + 1.25 NA Intergenic L1MA5|LINE|L1 -46408 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 138.75-78 chr8 144610204 144610317 + 1.25 NA intron (NM_001308207, intron 1 of 11) L1MEc|LINE|L1 3243 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 282.75-16 chr8 120806310 120806763 + 1.25 NA intron (NM_021021, intron 1 of 6) MER20B|DNA|hAT-Charlie 5510 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 263.25-17 chr6 38168359 38168611 + 1.25 NA TTS (NM_152733) TTS (NM_152733) -313111 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 220.25-32 chr4 56342779 56343103 + 1.25 NA exon (NM_001286670, exon 11 of 12) exon (NM_001286670, exon 11 of 12) 44550 NM_001323892 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 165.5-52 chr20 14856666 14856837 + 1.25 NA intron (NM_001351663, intron 5 of 17) MER5A1|DNA|hAT-Charlie 72767 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 261.5-17 chr3 51450266 51450631 + 1.25 NA intron (NR_146065, intron 5 of 25) L1M2|LINE|L1 49554 NM_001171904 9730 Hs.716623 NM_014703 ENSG00000145041 DCAF1 RIP|VPRBP DDB1 and CUL4 associated factor 1 protein-coding 178.25-25 chr2 48247112 48247321 + 1.25 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -67466 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 282.5-18 chr7 3314050 3314419 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 12982 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 129.75-84 chr9 82246118 82246229 + 1.25 NA Intergenic L1MA2|LINE|L1 257401 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 270-17 chr21 29172878 29173272 + 1.25 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) -20419 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 166.25-18 chr14 65991320 65991486 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR -494968 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 253.75-8 chr14 59800611 59800878 + 1.25 NA intron (NM_021136, intron 1 of 8) L1MCc|LINE|L1 70032 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 165.5-24 chr13 90373201 90373482 + 1.25 NA Intergenic Tigger2a|DNA|TcMar-Tigger -119947 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 241-6 chr10 72913418 72913746 + 1.25 NA intron (NR_130125, intron 6 of 7) intron (NR_130125, intron 6 of 7) 19843 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 176.25-40 chr21 35284143 35284427 + 1.25 NA Intergenic L2b|LINE|L2 -234987 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 257.5-18 chr21 24528294 24528627 + 1.25 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 99720 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 172-51 chr9 31040253 31040450 + 1.25 NA Intergenic Intergenic 341139 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 148.25-75 chr8 128536346 128536542 + 1.25 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 28235 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 123.75-84 chr5 5992543 5992643 + 1.25 NA Intergenic L1PA15|LINE|L1 344699 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 148.5-46 chr2 112742235 112742441 + 1.25 NA intron (NR_130712, intron 8 of 9) intron (NR_130712, intron 8 of 9) 20852 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 263.25-12 chr4 71050722 71050992 + 1.25 NA Intergenic L1MA7|LINE|L1 57208 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 292.25 chr10 30229789 30230209 + 1.25 NA intron (NR_120653, intron 2 of 2) intron (NR_120653, intron 2 of 2) 18147 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 148-14 chr12 44350346 44350562 + 1.25 NA intron (NM_001286211, intron 6 of 6) L1MA2|LINE|L1 514373 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 130-57 chr4 74407346 74407500 + 1.25 NA Intergenic Intergenic -37713 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 205.75-6 chr11 106600312 106600529 + 1.25 NA Intergenic L1M3|LINE|L1 349013 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 304.5-13 chr4 30453584 30453968 + 1.25 NA Intergenic Intergenic -266593 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 156.75-44 chr2 54486897 54487177 + 1.25 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 30710 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 208-7 chr11 100962024 100962371 + 1.25 NA intron (NM_001367945, intron 17 of 25) intron (NM_001367945, intron 17 of 25) 27923 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 206-3 chr10 15275763 15275953 + 1.25 NA exon (NM_001010924, exon 3 of 8) exon (NM_001010924, exon 3 of 8) 95431 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 330 chr11 17200663 17201245 + 1.25 NA intron (NM_002645, intron 1 of 32) AluSx1|SINE|Alu 7032 NM_002645 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 284.25 chr1 156096046 156096446 + 1.25 NA intron (NM_001282625, intron 3 of 12) intron (NM_001282625, intron 3 of 12) 13700 NM_001282625 4000 Hs.594444 NM_005572 ENSG00000160789 LMNA CDCD1|CDDC|CMD1A|CMT2B1|EMD2|FPL|FPLD|FPLD2|HGPS|IDC|LDP1|LFP|LGMD1B|LMN1|LMNC|LMNL1|MADA|PRO1 lamin A/C protein-coding 223-25 chr21 28844377 28844606 + 1.25 NA Intergenic Intergenic 40876 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 135.75-97 chr7 107547049 107547200 + 1.25 NA intron (NM_181733, intron 5 of 20) L1M3e|LINE|L1 -16833 NR_073004 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 147.25-18 chr16 52682827 52683002 + 1.25 NA Intergenic L1ME3A|LINE|L1 -75939 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 165.5-90 chr8 89975189 89975417 + 1.25 NA intron (NM_001024688, intron 6 of 16) intron (NM_001024688, intron 6 of 16) 9368 NM_002485 4683 Hs.492208 NM_002485 ENSG00000104320 NBN AT-V1|AT-V2|ATV|NBS|NBS1|P95 nibrin protein-coding 204.5-43 chr4 53172629 53172836 + 1.25 NA intron (NM_152540, intron 4 of 8) L1MA7|LINE|L1 193329 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 233.5-50 chr7 91767999 91768294 + 1.25 NA Intergenic Intergenic 112556 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 166.25-42 chr3 179288841 179289061 + 1.25 NA Intergenic Intergenic -21901 NM_171828 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 241-15 chr15 86366630 86366891 + 1.25 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -49792 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 191.25-56 chr7 27489602 27489779 + 1.25 NA Intergenic L1ME4a|LINE|L1 -126284 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 156.75-26 chr13 94664638 94664864 + 1.25 NA Intergenic Intergenic 43735 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 199-37 chr6 45324002 45324251 + 1.25 NA intron (NM_181356, intron 2 of 12) intron (NM_181356, intron 2 of 12) -4191 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 320.75-7 chr7 77384738 77385143 + 1.25 NA intron (NR_146937, intron 6 of 31) intron (NR_146937, intron 6 of 31) -30258 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 154.75-46 chr3 182216445 182216599 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR 264158 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 258-19 chr20 12303451 12303666 + 1.25 NA Intergenic THE1C-int|LTR|ERVL-MaLR 385665 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 124.75-27 chr14 44404685 44404824 + 1.25 NA Intergenic L4_A_Mam|LINE|RTE-X 102529 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 161.25-30 chr18 8528833 8529069 + 1.25 NA Intergenic L1PA14|LINE|L1 -80494 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 117-88 chr8 131577541 131577684 + 1.25 NA Intergenic Intergenic -326481 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 163.5-77 chr6 36975016 36975232 + 1.25 NA intron (NR_130739, intron 7 of 11) MER102a|DNA|hAT-Charlie 11427 NR_130739 23787 Hs.485262 NM_014341 ENSG00000137409 MTCH1 CGI-64|PIG60|PSAP|SLC25A49 mitochondrial carrier 1 protein-coding 174-28 chr2 49476457 49476612 + 1.25 NA Intergenic Intergenic -322007 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 244-11 chr2 38658675 38658919 + 1.25 NA Intergenic MIRb|SINE|MIR -7317 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 134.5-94 chr8 56884433 56884668 + 1.25 NA Intergenic L1ME3D|LINE|L1 109317 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 208.25-7 chr11 56400734 56401045 + 1.25 NA Intergenic Intergenic -11708 NR_145506 79482 NM_001348230 ENSG00000272987 OR5AL1 OR5AL1P olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding 173-37 chr3 6164609 6164882 + 1.25 NA Intergenic Intergenic 640704 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 271.75-7 chr3 44293590 44293936 + 1.25 NA intron (NM_001145030, intron 12 of 19) Tigger3b|DNA|TcMar-Tigger -44356 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 297.5-11 chr6 155393240 155393618 + 1.25 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 62410 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 173.75-50 chr8 48370937 48371193 + 1.25 NA Intergenic Cheshire|DNA|hAT-Charlie -180502 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 187-51 chr5 174667298 174667509 + 1.25 NA Intergenic L2a|LINE|L2 -57179 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 306-12 chr17 61129648 61130130 + 1.25 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 237815 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 339.5-7 chr2 151752582 151753152 + 1.25 NA Intergenic Intergenic -18380 NM_001164507 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 243.25-13 chr4 55835970 55836319 + 1.25 NA intron (NM_001351574, intron 2 of 2) intron (NM_001351574, intron 2 of 2) 16141 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 113.5-6 chr1 116476973 116477154 + 1.25 NA intron (NR_125973, intron 1 of 3) L2b|LINE|L2 1763 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 146.25-41 chr2 187195481 187195693 + 1.25 NA Intergenic Intergenic 252665 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 155.5-26 chr12 959137 959316 + 1.25 NA intron (NM_001297419, intron 1 of 11) MIRb|SINE|MIR -9504 NM_001297421 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 146.5-31 chr15 83696553 83696758 + 1.25 NA intron (NM_207517, intron 2 of 29) intron (NM_207517, intron 2 of 29) 42532 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 222-22 chr2 168405313 168405572 + 1.25 NA Intergenic HSMAR2|DNA|TcMar-Mariner -50830 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 157.75-65 chr5 168576670 168576870 + 1.25 NA intron (NM_024594, intron 1 of 6) intron (NM_024594, intron 1 of 6) 2598 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 219.75-16 chr2 50400322 50400560 + 1.25 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -52685 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 240.25-19 chr3 110796632 110796871 + 1.25 NA Intergenic MER41B|LTR|ERV1 273208 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 203.5-46 chr8 65647791 65648147 + 1.25 NA intron (NM_001145839, intron 1 of 6) L1M5|LINE|L1 3235 NM_014637 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 238-27 chr5 22326710 22327012 + 1.25 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -113011 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 135-60 chr5 131802522 131802753 + 1.25 NA Intergenic Intergenic -5620 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 182.75-62 chr9 32613451 32613607 + 1.25 NA Intergenic Intergenic 22140 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 309.75-2 chr1 187340590 187340967 + 1.25 NA intron (NR_126347, intron 3 of 3) intron (NR_126347, intron 3 of 3) -102850 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 205.25-8 chr11 81086081 81086355 + 1.25 NA Intergenic L1PA16|LINE|L1 -323415 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 162.5-72 chr5 108196585 108196730 + 1.25 NA intron (NM_001163315, intron 5 of 8) intron (NM_001163315, intron 5 of 8) 185441 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 319.25 chr1 208757449 208757833 + 1.25 NA Intergenic Intergenic 28953 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 145.5-21 chr12 23340107 23340241 + 1.25 NA Intergenic Intergenic 164538 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 169.75-45 chr4 67781172 67781334 + 1.25 NA Intergenic MER4B|LTR|ERV1 -25167 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 214.75-23 chr22 43515160 43515503 + 1.25 NA promoter-TSS (NR_046563) promoter-TSS (NR_046563) -923 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 144.5-83 chr4 183095421 183095566 + 1.25 NA Intergenic L1ME3G|LINE|L1 3706 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 140-69 chr9 117824748 117824981 + 1.25 NA Intergenic Intergenic 120461 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 178.25-16 chr11 43824106 43824376 + 1.25 NA intron (NM_016142, intron 6 of 10) MER102c|DNA|hAT-Charlie -56590 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 236.25-12 chr18 35984613 35984812 + 1.25 NA Intergenic L1MC4|LINE|L1 12033 NM_031446 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 205-3 chr1 78449236 78449512 + 1.25 NA Intergenic L2|LINE|L2 -41600 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 316-13 chr3 59061156 59061550 + 1.25 NA Intergenic L1PB1|LINE|L1 -11321 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 281.75-14 chr5 25995025 25995445 + 1.25 NA Intergenic LTR101_Mam|LTR|ERVL 804282 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 196.5-60 chr6 34878266 34878607 + 1.25 NA TTS (NM_017754) TTS (NM_017754) 9606 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 163.25-68 chr8 20492531 20492661 + 1.25 NA Intergenic MIRb|SINE|MIR 122330 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 157.25-45 chr21 28321022 28321272 + 1.25 NA Intergenic L1M3d|LINE|L1 -92480 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 179-30 chr2 53452218 53452418 + 1.25 NA Intergenic MamTip2|DNA|hAT-Tip100 -315465 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 159-46 chr3 139486359 139486498 + 1.25 NA intron (NR_121609, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat -9912 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 184.75-26 chr15 99116866 99117122 + 1.25 NA intron (NM_145728, intron 2 of 3) MSTB|LTR|ERVL-MaLR 11914 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 278.5-19 chr20 41007764 41008137 + 1.25 NA intron (NR_145525, intron 2 of 2) intron (NR_145525, intron 2 of 2) -20872 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 228.75-13 chr14 51124321 51124548 + 1.25 NA Intergenic L1ME4b|LINE|L1 -28730 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 125.75-22 chr14 49038219 49038337 + 1.25 NA Intergenic Intergenic 548102 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 199.75-36 chr5 146733336 146733514 + 1.25 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 145360 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 230.25-14 chr2 61787871 61788072 + 1.25 NA Intergenic Intergenic 66089 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 213.75-51 chr8 130136793 130137136 + 1.25 NA exon (NM_001362926, exon 14 of 29) exon (NM_001362926, exon 14 of 29) -52196 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 166.5-52 chr2 18064661 18064823 + 1.25 NA Intergenic Intergenic 186075 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 229.75-12 chr18 15215910 15216128 + 1.25 NA Intergenic Intergenic 109900 NR_027417 644669 Hs.579474 NR_027417 ENSG00000215512 LOC644669 - ankyrin repeat domain 30B pseudogene pseudo 125.75-74 chr8 101702671 101702867 + 1.25 NA intron (NM_001040624, intron 6 of 7) intron (NM_001040624, intron 6 of 7) 88200 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 168.25-6 chr1 248888863 248889038 + 1.25 NA Intergenic L1PA17|LINE|L1 -17285 NM_170725 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 132.5-84 chr4 107757846 107758040 + 1.25 NA Intergenic Intergenic -37709 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 208.25-46 chr9 5618345 5618685 + 1.25 NA Intergenic Intergenic -10592 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 161.25-82 chr9 133502428 133502610 + 1.25 NA Intergenic L1MEd|LINE|L1 22440 NM_001080483 389827 NM_001080483 ENSG00000187616 MYMK MYOMAKER|TMEM226|TMEM8C myomaker, myoblast fusion factor protein-coding 298.75-2 chr11 114863957 114864402 + 1.25 NA Intergenic Intergenic 185652 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 225-37 chr7 116790377 116790686 + 1.25 NA intron (NM_000245, intron 19 of 20) L1MB2|LINE|L1 -72056 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 137.5-86 chr4 97042222 97042421 + 1.25 NA Intergenic Intergenic -324605 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 195.5-84 chr7 117560579 117560863 + 1.25 NA intron (NM_000492, intron 11 of 26) intron (NM_000492, intron 11 of 26) 3955 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 283-4 chr13 33067693 33068027 + 1.25 NA Intergenic Intergenic 51437 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 264.75-23 chr8 69088447 69088680 + 1.25 NA intron (NR_039986, intron 1 of 4) L1M2|LINE|L1 15627 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 180.25-52 chr5 28063521 28063760 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 224025 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 228.25-31 chr5 151336656 151337048 + 1.25 NA intron (NM_181776, intron 5 of 9) intron (NM_181776, intron 5 of 9) 10707 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 237.5-6 chr10 26449066 26449470 + 1.25 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 10927 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 144-55 chr4 154964332 154964546 + 1.25 NA Intergenic L2a|LINE|L2 182934 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 146-32 chr2 173853252 173853431 + 1.25 NA Intergenic L2|LINE|L2 110539 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 210.5-55 chr7 43292428 43292713 + 1.25 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 141675 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 171.5-50 chr20 39935507 39935722 + 1.25 NA Intergenic L1M5|LINE|L1 -68847 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 227.5-17 chr14 58565669 58566219 + 1.25 NA Intergenic Intergenic -68124 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 142.5-24 chr14 63049555 63049795 + 1.25 NA Intergenic MIR|SINE|MIR -4217 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 135-4 chr1 77104128 77104347 + 1.25 NA intron (NM_005482, intron 10 of 10) L1MEc|LINE|L1 44094 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 151.75-40 chr19 57046613 57046822 + 1.25 NA Intergenic L2b|LINE|L2 -73424 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 195.5-39 chr19 41037016 41037471 + 1.25 NA Intergenic L1P1|LINE|L1 45961 NM_000767 1555 Hs.1360 NM_000767 ENSG00000197408 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450 family 2 subfamily B member 6 protein-coding 199.75-4 chr11 98218620 98218779 + 1.25 NA Intergenic AluY|SINE|Alu -802250 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 279.5-10 chr4 59528428 59528872 + 1.25 NA Intergenic Intergenic 515077 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 126.75-12 chr10 76260241 76260419 + 1.25 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 477569 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 301.75-14 chr8 86473935 86474429 + 1.25 NA 3' UTR (NM_016033, exon 10 of 10) 3' UTR (NM_016033, exon 10 of 10) 34504 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 114.25-31 chr14 55724793 55724884 + 1.25 NA Intergenic Charlie1b|DNA|hAT-Charlie -41407 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 213-26 chr20 4617295 4617595 + 1.25 NA Intergenic L1MDa|LINE|L1 -69011 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 238-8 chr11 98841164 98841440 + 1.25 NA Intergenic AluSz6|SINE|Alu -179647 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 292.75-3 chr14 50242131 50242435 + 1.25 NA TTS (NM_024884) TTS (NM_024884) -10705 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 242-33 chr7 47003991 47004224 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie -306985 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 264-23 chr4 104386589 104386884 + 1.25 NA Intergenic L1ME3A|LINE|L1 -104229 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 156-42 chr20 25072984 25073163 + 1.25 NA intron (NR_045951, intron 3 of 4) intron (NR_045951, intron 3 of 4) 9306 NM_199425 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 172-47 chr8 118916423 118916707 + 1.25 NA Intergenic L1MCc|LINE|L1 35320 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 130.5-76 chr6 39024645 39024856 + 1.25 NA intron (NM_001371, intron 90 of 91) intron (NM_001371, intron 90 of 91) -24031 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 162.75-18 chr14 29152481 29152657 + 1.25 NA Intergenic Intergenic -366782 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 175.25-9 chr10 109051215 109051409 + 1.25 NA Intergenic L2c|LINE|L2 871934 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 242.5-25 chr3 106559020 106559252 + 1.25 NA Intergenic L1MEc|LINE|L1 681502 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 152.25-23 chr15 51239490 51239712 + 1.25 NA intron (NM_001347252, intron 2 of 9) L1ME3B|LINE|L1 -2589 NR_039863 100616369 NR_039863 ENSG00000266593 MIR4713 - microRNA 4713 ncRNA 241-27 chr4 87200892 87201117 + 1.25 NA intron (NM_001292006, intron 1 of 9) L1MB2|LINE|L1 19264 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 280.5-24 chr6 132820812 132821447 + 1.25 NA Intergenic Intergenic 3910 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 131.75-42 chr2 25331277 25331535 + 1.25 NA intron (NR_135490, intron 1 of 23) intron (NR_135490, intron 1 of 23) -2685 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 160.5-3 chr1 219029994 219030218 + 1.25 NA intron (NR_031644, intron 6 of 6) L1MB7|LINE|L1 -111595 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 144.75-38 chr2 22401152 22401282 + 1.25 NA Intergenic Intergenic -135262 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 157.25-52 chr4 52145543 52145811 + 1.25 NA Intergenic L1MB5|LINE|L1 94373 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 161-64 chr8 79087076 79087338 + 1.25 NA Intergenic Intergenic -244981 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 211.75-16 chr17 67604214 67604461 + 1.25 NA intron (NM_181671, intron 5 of 9) intron (NM_181671, intron 5 of 9) -113496 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 198.75-32 chr4 69837629 69837965 + 1.25 NA Intergenic AluJo|SINE|Alu 22348 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 130.25-44 chr2 39654456 39654633 + 1.25 NA Intergenic Intergenic -10954 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 584.25 chr6 127289803 127290643 + 1.25 NA exon (NM_001139510, exon 6 of 6) exon (NM_001139510, exon 6 of 6) 23385 NM_001242846 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 266.75-10 chr7 113650413 113650789 + 1.25 NA Intergenic Intergenic 268408 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 120.75-45 chr2 44245650 44245814 + 1.25 NA Intergenic LTR24B|LTR|ERV1 -29748 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 136-17 chr14 49745732 49745855 + 1.25 NA intron (NM_172193, intron 12 of 12) L2c|LINE|L2 -22360 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 156-27 chr13 40643480 40643696 + 1.25 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 23053 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 189.75-41 chr5 79106675 79106841 + 1.25 NA Intergenic Intergenic -5051 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 191.5-47 chr4 80255235 80255424 + 1.25 NA Intergenic Intergenic -11259 NM_033143 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 131.75-75 chr7 15463292 15463470 + 1.25 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 98634 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 272.75-13 chr3 133283181 133283580 + 1.25 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -26259 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 230.25-24 chr4 88044500 88044873 + 1.25 NA intron (NR_156488, intron 5 of 13) Tigger4b|DNA|TcMar-Tigger 37051 NM_000297 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 161.5-12 chr10 66174855 66175094 + 1.25 NA intron (NM_001127384, intron 13 of 17) MIRc|SINE|MIR 603549 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 235-35 chr5 74093063 74093293 + 1.25 NA Intergenic Intergenic 215147 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 199-53 chr9 35108299 35108542 + 1.25 NA intron (NM_025182, intron 2 of 8) intron (NM_025182, intron 2 of 8) 3032 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 252.75-21 chr4 15077045 15077295 + 1.25 NA intron (NR_125911, intron 2 of 5) L1MB1|LINE|L1 74689 NM_182646 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 174-6 chr1 240540364 240540763 + 1.25 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 71592 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 156.75-45 chr2 56211087 56211366 + 1.25 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -25456 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 146-31 chr2 161469705 161469858 + 1.25 NA Intergenic L1MEj|LINE|L1 38121 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 182.75-34 chr4 33328130 33328475 + 1.25 NA Intergenic L2b|LINE|L2 711591 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 114.25-82 chr5 8322147 8322284 + 1.25 NA Intergenic LTR82A|LTR|ERVL 135349 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 268.25-7 chr2 84455139 84455507 + 1.25 NA intron (NM_003849, intron 1 of 8) AluSp|SINE|Alu 3957 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 133-9 chr11 9205550 9205668 + 1.25 NA intron (NR_145966, intron 3 of 21) intron (NR_145966, intron 3 of 21) 59717 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 193.25-17 chr2 115503976 115504171 + 1.25 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 160258 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 263.5-29 chr7 4155519 4155895 + 1.25 NA intron (NM_001079653, intron 4 of 19) intron (NM_001079653, intron 4 of 19) -20870 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 211.5-29 chr2 182315083 182315353 + 1.25 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -73155 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 154.75-32 chr2 126411278 126411451 + 1.25 NA Intergenic L1ME1|LINE|L1 -244571 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 185.75-39 chr22 38256375 38256535 + 1.25 NA intron (NM_001195072, intron 1 of 9) AluSg|SINE|Alu 16209 NM_001195071 25829 Hs.182626 NM_012264 ENSG00000198792 TMEM184B C22orf5|FM08|HS5O6A|HSPC256 transmembrane protein 184B protein-coding 197.5-59 chr8 93472008 93472274 + 1.25 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) 228292 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 139-2 chr10 20206469 20206641 + 1.25 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -345415 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 172-34 chr4 148484576 148484784 + 1.25 NA Intergenic Intergenic -39982 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 141.25-55 chr4 55877525 55877706 + 1.25 NA intron (NM_001024924, intron 8 of 18) intron (NM_001024924, intron 8 of 18) 23965 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 248-18 chr4 108847741 108848004 + 1.25 NA intron (NM_198721, intron 26 of 36) intron (NM_198721, intron 26 of 36) -84819 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 203.75-8 chr14 50216730 50217033 + 1.25 NA intron (NM_006939, intron 1 of 22) L1ME1|LINE|L1 14697 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 214.5-57 chr8 6578291 6578544 + 1.25 NA intron (NM_024596, intron 12 of 13) intron (NM_024596, intron 12 of 13) -15172 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 176.75-22 chr2 18423877 18424122 + 1.25 NA Intergenic Intergenic 136654 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 227.25-29 chr4 71846903 71847179 + 1.25 NA Intergenic L1M2|LINE|L1 -41521 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 163.75-71 chr8 107210411 107210565 + 1.25 NA Intergenic HSMAR2|DNA|TcMar-Mariner 126027 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 135-67 chr6 161300823 161300988 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -26844 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 262.5-16 chr19 44965385 44965753 + 1.25 NA intron (NM_001282175, intron 2 of 13) AluY|SINE|Alu 10189 NM_001294 1209 Hs.444441 NM_001294 ENSG00000104853 CLPTM1 - CLPTM1 regulator of GABA type A receptor forward trafficking protein-coding 284-20 chr5 171416121 171416415 + 1.25 NA Intergenic Intergenic -3379 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 122.25-69 chr4 36289762 36290074 + 1.25 NA intron (NM_001170700, intron 2 of 9) intron (NM_001170700, intron 2 of 9) 8302 NR_160267 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 373.75-7 chr9 118390835 118391198 + 1.25 NA Intergenic L1ME3A|LINE|L1 -288655 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 166.25-32 chr2 111247900 111248067 + 1.25 NA intron (NR_015395, intron 3 of 6) intron (NR_015395, intron 3 of 6) 73103 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 211.75-30 chr5 40175013 40175246 + 1.25 NA Intergenic Intergenic 122838 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 151.5-77 chr7 2155606 2155763 + 1.25 NA intron (NM_001013837, intron 10 of 18) L1MB3|LINE|L1 -66632 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 225.5-51 chr8 123025365 123025701 + 1.25 NA intron (NM_001330601, intron 1 of 6) L2b|LINE|L2 239 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 149.5-50 chr2 9950920 9951089 + 1.25 NA promoter-TSS (NM_198182) promoter-TSS (NM_198182) -689 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 164.25-38 chr20 16229573 16229817 + 1.25 NA Intergenic LTR80B|LTR|ERVL -243813 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 156.5-27 chr18 3277053 3277260 + 1.25 NA intron (NM_001144944, intron 2 of 3) intron (NM_001144944, intron 2 of 3) 14437 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 182.75-19 chr2 138234328 138234534 + 1.25 NA Intergenic Intergenic 132547 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 145.75-38 chr2 129061698 129061827 + 1.25 NA Intergenic Intergenic 197162 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 153.5 chr1 22200302 22200647 + 1.25 NA Intergenic L1MC2|LINE|L1 -57377 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 238.25-15 chr2 197661627 197661914 + 1.25 NA intron (NM_144629, intron 1 of 8) L1MA4A|LINE|L1 13817 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 130.5-13 chr1 227437915 227438049 + 1.25 NA Intergenic Intergenic -119490 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 287.75-3 chr2 126788578 126788968 + 1.25 NA Intergenic Intergenic -110117 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 150.25-53 chr3 81018816 81019016 + 1.25 NA intron (NR_132411, intron 1 of 1) MARNA|DNA|TcMar-Mariner 25048 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 154.25-12 chr10_GL383545v1_alt 41891 42067 + 1.25 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 38961 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 244-12 chr2 201266657 201267015 + 1.25 NA intron (NR_111983, intron 2 of 8) intron (NR_111983, intron 2 of 8) 6300 NM_033356 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 158-58 chr6 86711958 86712152 + 1.25 NA Intergenic L2c|LINE|L2 -225473 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 286.25-4 chr12 17263563 17263873 + 1.25 NA Intergenic L1ME3D|LINE|L1 274971 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 196.5-45 chr2 107039366 107039700 + 1.25 NA Intergenic L1PA14|LINE|L1 -152424 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 220-10 chr14 62787771 62788048 + 1.25 NA intron (NM_139318, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 257549 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 175-30 chr2 154891358 154891631 + 1.25 NA Intergenic (A)n|Simple_repeat|Simple_repeat 192799 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 211-7 chr10 68305935 68306339 + 1.25 NA intron (NM_001033083, intron 2 of 8) intron (NM_001033083, intron 2 of 8) -25556 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 195.5-12 chr11 24241445 24241715 + 1.25 NA Intergenic Intergenic -255473 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 159.25-66 chr7 55118174 55118312 + 1.25 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 8404 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 215.5-48 chr8 18952540 18952766 + 1.25 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 61050 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 265.25-6 chr11 69733055 69733365 + 1.25 NA Intergenic Intergenic -29188 NM_005117 9965 Hs.249200 NM_005117 ENSG00000162344 FGF19 - fibroblast growth factor 19 protein-coding 167.5-52 chr3 57310859 57311027 + 1.25 NA exon (NM_001366028, exon 67 of 74) exon (NM_001366028, exon 67 of 74) -18258 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 263.5-12 chr19 29504963 29505308 + 1.25 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 20617 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 143.25-74 chr8 126177423 126177578 + 1.25 NA Intergenic Intergenic -147995 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 320.75-3 chr3 55810776 55811227 + 1.25 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 41593 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 135.75-8 chr1 183725503 183725629 + 1.25 NA intron (NM_001297669, intron 2 of 18) L1ME1|LINE|L1 -72250 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 220.25-36 chr5 109502062 109502282 + 1.25 NA Intergenic Intergenic -92198 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 242.5-23 chr21 34989590 34989926 + 1.25 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 49668 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 226.75-29 chr6 64280187 64280550 + 1.25 NA intron (NM_001292009, intron 30 of 43) MIR3|SINE|MIR 473532 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 301.25-10 chr7 92208494 92208848 + 1.25 NA intron (NM_001013406, intron 15 of 16) L1MA4|LINE|L1 -4573 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 133.5-114 chr8 75828967 75829150 + 1.25 NA Intergenic Intergenic 289090 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 168.25-4 chr1 229082157 229082297 + 1.25 NA Intergenic AluJr|SINE|Alu 92574 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 165.5-14 chr11 95077035 95077242 + 1.25 NA Intergenic Intergenic 10261 NR_103726 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 286-11 chr12 20301550 20301926 + 1.25 NA Intergenic Intergenic -67507 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 157-42 chr3 168259706 168259908 + 1.25 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 10285 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 187.25-57 chr5 166699258 166699532 + 1.25 NA Intergenic Intergenic 226975 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 210.25-12 chr12 26950495 26950791 + 1.25 NA intron (NM_015633, intron 1 of 6) intron (NM_015633, intron 1 of 6) 12173 NM_001171887 26127 Hs.591162 NM_015633 ENSG00000111790 FGFR1OP2 HSPC123-like|WIT3.0 FGFR1 oncogene partner 2 protein-coding 146-25 chr2 14143223 14143360 + 1.25 NA Intergenic Intergenic 257667 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 199-6 chr1 247059872 247060097 + 1.25 NA intron (NM_033213, intron 1 of 3) L1MC|LINE|L1 18827 NM_001204220 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 201.25-40 chr8 76878754 76879067 + 1.25 NA Intergenic MLT2C1|LTR|ERVL 87940 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 194.75-13 chr14 87655736 87655968 + 1.25 NA promoter-TSS (NR_146551) promoter-TSS (NR_146551) -558 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 213.75-12 chr10 78358289 78358518 + 1.25 NA Intergenic Intergenic 91061 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 195.5-38 chr19 29784419 29784735 + 1.25 NA Intergenic Intergenic -27414 NM_001322261 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 150-85 chr8 144103878 144104117 + 1.25 NA promoter-TSS (NM_030974) promoter-TSS (NM_030974) -224 NM_030974 81858 Hs.529755 NM_030974 ENSG00000179526 SHARPIN SIPL1 SHANK associated RH domain interactor protein-coding 160.75-65 chr7 114561339 114561568 + 1.25 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) -91892 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 116-7 chr1 214993704 214993831 + 1.25 NA Intergenic Intergenic -11775 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 252.75-35 chr8 135956134 135956474 + 1.25 NA Intergenic Intergenic 498848 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 173.5-91 chr6 149261561 149261780 + 1.25 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) -4119 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 179.5-4 chr1 33623650 33623894 + 1.25 NA intron (NM_052896, intron 35 of 69) intron (NM_052896, intron 35 of 69) 151127 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 172 chr1 84809970 84810217 + 1.25 NA Intergenic Intergenic 83113 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 213-8 chr1 216079057 216079314 + 1.25 NA non-coding (NR_125992, exon 2 of 3) non-coding (NR_125992, exon 2 of 3) 6720 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 186.25-4 chr1 202913045 202913270 + 1.25 NA intron (NM_001303109, intron 4 of 9) intron (NM_001303109, intron 4 of 9) 14077 NM_001303109 59349 Hs.706793 NM_021633 ENSG00000117153 KLHL12 C3IP1|DKIR kelch like family member 12 protein-coding 243.5-18 chr4 53777211 53777467 + 1.25 NA Intergenic Intergenic 81438 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 221.75-4 chr11 34754437 34754674 + 1.25 NA Intergenic Intergenic 121989 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 151.25-11 chr12 10696616 10696838 + 1.25 NA Intergenic Intergenic -22675 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 320.75-4 chr5 19745823 19746108 + 1.25 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 140307 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 230-30 chr8 53083414 53083627 + 1.25 NA Intergenic Intergenic 143612 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 196.25-54 chr5 20231825 20232033 + 1.25 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -73622 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 305.25-13 chr4 86561365 86561874 + 1.25 NA Intergenic Intergenic -19067 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 294-7 chr2 43895823 43896077 + 1.25 NA intron (NM_133259, intron 35 of 37) intron (NM_133259, intron 35 of 37) 56979 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 192.75-47 chr8 85019184 85019370 + 1.25 NA Intergenic MIRc|SINE|MIR -87961 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 159.75-66 chr8 118870783 118871003 + 1.25 NA Intergenic Intergenic 80992 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 125.5-67 chr2 78704621 78704804 + 1.25 NA Intergenic Intergenic 159181 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 256.25-9 chr2 224852231 224852548 + 1.25 NA exon (NM_001363762, exon 18 of 56) exon (NM_001363762, exon 18 of 56) 94660 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 288-15 chr4 71371638 71372034 + 1.25 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 32783 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 255.25-15 chr21 28494653 28494957 + 1.25 NA Intergenic Intergenic -44513 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 113.25-87 chr3 146391779 146391916 + 1.25 NA Intergenic Intergenic 77454 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 149-58 chr8 130363788 130363924 + 1.25 NA intron (NM_001247996, intron 2 of 30) intron (NM_001247996, intron 2 of 30) -67323 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 210.25-4 chr1 156968267 156968586 + 1.25 NA intron (NM_014784, intron 9 of 39) MIRb|SINE|MIR -32182 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 121.5-109 chr8 115669984 115670153 + 1.25 NA Intergenic Intergenic -1093 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 202-19 chr4 97039148 97039394 + 1.25 NA Intergenic L1MEf|LINE|L1 -327655 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 257.75-16 chr20 58407909 58408140 + 1.25 NA intron (NR_036633, intron 1 of 3) intron (NR_036633, intron 1 of 3) 18795 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 141.5-108 chr7 80638829 80638946 + 1.25 NA intron (NM_001371079, intron 1 of 13) intron (NM_001371079, intron 1 of 13) 245 NM_001371079 267.25-12 chr6 137190195 137190441 + 1.25 NA Intergenic MER4B-int|LTR|ERV1 -16674 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 178.25-64 chr8 119345212 119345500 + 1.25 NA Intergenic MIRc|SINE|MIR 20185 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 117-51 chr22 21953495 21953681 + 1.25 NA promoter-TSS (NM_014634) promoter-TSS (NM_014634) -740 NM_014634 9647 Hs.112728 NM_014634 ENSG00000100034 PPM1F CAMKP|CaMKPase|FEM-2|POPX2|hFEM-2 protein phosphatase, Mg2+/Mn2+ dependent 1F protein-coding 139.25-90 chr9 125051643 125051797 + 1.25 NA intron (NM_173690, intron 4 of 18) intron (NM_173690, intron 4 of 18) 91808 NM_001144877 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 172.25-4 chr1 216085964 216086130 + 1.25 NA intron (NM_206933, intron 24 of 71) intron (NM_206933, intron 24 of 71) 13582 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 238-25 chr3 123291337 123291528 + 1.25 NA intron (NM_183357, intron 17 of 20) intron (NM_183357, intron 17 of 20) 89489 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 126.75-75 chr5 91105005 91105144 + 1.25 NA intron (NR_003149, intron 87 of 89) AluJb|SINE|Alu 209328 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 185.5-58 chr5 13258421 13258620 + 1.25 NA Intergenic L2|LINE|L2 -225634 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 182.25-40 chr4 59954308 59954665 + 1.25 NA Intergenic L1MA3|LINE|L1 940913 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 137.75-15 chr11 96785667 96785800 + 1.25 NA Intergenic Intergenic 277308 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 113.5-92 chr4 132360756 132360905 + 1.25 NA Intergenic L1MEd|LINE|L1 -230259 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 161.75-16 chr14 64988744 64988938 + 1.25 NA intron (NM_002028, intron 1 of 11) intron (NM_002028, intron 1 of 11) 1946 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 173.75-14 chr12 52725532 52725835 + 1.25 NA Intergenic MIRc|SINE|MIR -22159 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 189.25-26 chr2 104487321 104487626 + 1.25 NA TTS (NR_110113) TTS (NR_110113) 23036 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 247.25 chr10 102718102 102718400 + 1.25 NA intron (NM_001350989, intron 2 of 12) intron (NM_001350989, intron 2 of 12) 3615 NM_178858 118980 Hs.44070 NM_178858 ENSG00000156398 SFXN2 SLC56A2 sideroflexin 2 protein-coding 179.75-13 chr13 57004958 57005123 + 1.25 NA Intergenic Intergenic -135878 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 208-6 chr10 105044512 105044749 + 1.25 NA intron (NM_014978, intron 5 of 26) intron (NM_014978, intron 5 of 26) -378414 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 174-37 chr3 3840524 3840832 + 1.25 NA intron (NM_001324188, intron 2 of 2) intron (NM_001324188, intron 2 of 2) -39803 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 301.75-7 chr16 53203176 53203578 + 1.25 NA intron (NM_001352127, intron 2 of 38) L2|LINE|L2 -4588 NM_001352156 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 213.75-9 chr1 221292336 221292683 + 1.25 NA Intergenic LTR9A1|LTR|ERV1 43787 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 158.5-68 chr3 42774402 42774574 + 1.25 NA TTS (NR_122070) TTS (NR_122070) -1235 NM_144719 152206 Hs.604182 NM_144719 ENSG00000244607 CCDC13 - coiled-coil domain containing 13 protein-coding 357.25-3 chr2 10393284 10393681 + 1.25 NA intron (NM_001258359, intron 1 of 4) MIR3|SINE|MIR 24718 NM_001258359 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 165.75-72 chr8 98101558 98101706 + 1.25 NA TTS (NM_005836) TTS (NM_005836) 15539 NM_005836 10247 Hs.18426 NM_005836 ENSG00000132541 RIDA HRSP12|P14.5|PSP|UK114|hp14.5 reactive intermediate imine deaminase A homolog protein-coding 142.5-34 chr16 66301541 66301761 + 1.25 NA Intergenic Intergenic -65040 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 248.75-14 chr4 48249604 48249913 + 1.25 NA intron (NM_003215, intron 1 of 17) intron (NM_003215, intron 1 of 17) 20080 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 214.75 chr1 61532004 61532238 + 1.25 NA Intergenic MLT1O|LTR|ERVL-MaLR -122121 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 280.75-2 chr10 70995474 70995847 + 1.25 NA Intergenic Intergenic 56607 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 148.5-8 chr10 57110272 57110472 + 1.25 NA Intergenic L1MA2|LINE|L1 194187 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 142.75-47 chr2 171143717 171144044 + 1.25 NA intron (NM_001136554, intron 1 of 20) L1ME3A|LINE|L1 17013 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 141.5-45 chr17 64245636 64245756 + 1.25 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) -14962 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 190-15 chr16 46690953 46691121 + 1.25 NA exon (NM_014321, exon 2 of 7) exon (NM_014321, exon 2 of 7) 1378 NR_037620 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 232-31 chrX 30899652 30899964 + 1.25 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -10554 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 200.75-47 chr9 36364303 36364530 + 1.25 NA intron (NM_194328, intron 4 of 11) Tigger2a|DNA|TcMar-Tigger 35853 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 181.25-56 chr8 118993555 118993855 + 1.25 NA intron (NM_001324095, intron 1 of 7) MLT1B|LTR|ERVL-MaLR 41442 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 191.5-21 chr13 48051017 48051265 + 1.25 NA non-coding (NR_136688, exon 5 of 5) non-coding (NR_136688, exon 5 of 5) 13415 NM_018283 55270 Hs.144407 NM_018283 ENSG00000136159 NUDT15 MTH2|NUDT15D nudix hydrolase 15 protein-coding 244.25-6 chr14 96816688 96817021 + 1.25 NA intron (NM_003384, intron 1 of 12) L1MC5a|LINE|L1 19472 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 114.75-2 chr1 70523205 70523308 + 1.25 NA Intergenic Intergenic 111988 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 233-25 chr5 91364999 91365339 + 1.25 NA Intergenic Intergenic 14928 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 115.75-71 chr4 91125245 91125354 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 890268 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 202-15 chr22 36905337 36905732 + 1.25 NA Intergenic Intergenic -8094 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 251.25-10 chr14 77619482 77619865 + 1.25 NA Intergenic AluSz6|SINE|Alu -2906 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 161.5-59 chr3 111786862 111787104 + 1.25 NA intron (NM_001185106, intron 4 of 4) L2b|LINE|L2 54487 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 211.5-15 chr13 99986012 99986282 + 1.25 NA 3' UTR (NM_007129, exon 3 of 3) 3' UTR (NM_007129, exon 3 of 3) 4363 NM_007129 7546 Hs.653700 NM_007129 ENSG00000043355 ZIC2 HPE5 Zic family member 2 protein-coding 183.5-66 chr5 84422575 84422782 + 1.25 NA Intergenic Intergenic -37798 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 253.5-15 chr14 59452630 59452991 + 1.25 NA Intergenic L1MC1|LINE|L1 12570 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 240.75-15 chr2 15496887 15497112 + 1.25 NA intron (NR_052013, intron 11 of 50) L2c|LINE|L2 64335 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 217.25-25 chr5 33711643 33711922 + 1.25 NA intron (NM_001324512, intron 3 of 21) intron (NM_001324512, intron 3 of 21) 180208 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 357.25-5 chr6 121421886 121422430 + 1.25 NA Intergenic L1ME3A|LINE|L1 -13488 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 233.75-11 chr14 56394028 56394295 + 1.25 NA Intergenic L1MC1|LINE|L1 -120170 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 238.75-8 chr2 16546640 16546851 + 1.25 NA Intergenic Intergenic 119089 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 229.5-8 chr10 8144945 8145304 + 1.25 NA Intergenic Intergenic 90436 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 202.25-21 chr2 81766357 81766585 + 1.25 NA Intergenic Intergenic -299525 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 318.5-14 chr22 24881860 24882281 + 1.25 NA intron (NM_001098498, intron 14 of 23) AluJb|SINE|Alu 64625 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 207.75-10 chr12 29439771 29439988 + 1.25 NA 3' UTR (NM_001353179, exon 26 of 26) 3' UTR (NM_001353179, exon 26 of 26) 50585 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 247-7 chr12 9055644 9056013 + 1.25 NA intron (NR_034140, intron 2 of 2) intron (NR_034140, intron 2 of 2) 9242 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 161.75-45 chr5 151910972 151911179 + 1.25 NA intron (NM_000171, intron 1 of 8) intron (NM_000171, intron 1 of 8) 13776 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 245.25-18 chr2 225760903 225761315 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 360223 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 168-14 chr10 61418195 61418429 + 1.25 NA intron (NR_134508, intron 4 of 6) MER67D|LTR|ERV1 -34327 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 205-29 chr3 122343523 122343800 + 1.25 NA Intergenic L1MB8|LINE|L1 18413 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 222-24 chr22 27648428 27648797 + 1.25 NA Intergenic Intergenic 153144 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 234.75-47 chr9 97696366 97696724 + 1.25 NA 5' UTR (NM_001354975, exon 1 of 6) 5' UTR (NM_001354975, exon 1 of 6) 864 NR_027302 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 163-42 chr5 78757183 78757330 + 1.25 NA Intergenic Intergenic -108484 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 157-6 chr10 53266348 53266709 + 1.25 NA Intergenic Intergenic -494828 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 383.5-8 chr8 78019979 78020380 + 1.25 NA Intergenic L1PREC2|LINE|L1 -496161 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 201.75-39 chr8 117898582 117898798 + 1.25 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 22223 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 220.75-27 chr6 14707248 14707531 + 1.25 NA Intergenic Intergenic -421935 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 134.25-30 chr17 28556517 28556635 + 1.25 NA intron (NM_033198, intron 9 of 11) intron (NM_033198, intron 9 of 11) -3948 NM_005148 9094 Hs.410455 NM_005148 ENSG00000109103 UNC119 HRG4|IMD13|POC7|POC7A unc-119 lipid binding chaperone protein-coding 188.25-6 chr11 23106235 23106529 + 1.25 NA Intergenic Intergenic -245908 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 202.25-34 chr5 109057448 109057666 + 1.25 NA intron (NR_146155, intron 16 of 19) AluJo|SINE|Alu 132951 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 318-12 chr2 227137785 227138102 + 1.25 NA intron (NM_000092, intron 4 of 47) intron (NM_000092, intron 4 of 47) 26616 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 133.75-15 chr11 101202086 101202270 + 1.25 NA Intergenic Intergenic -72365 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 291.25-3 chr1 147509496 147509897 + 1.25 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 8179 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 142.5-90 chr7 113692738 113692920 + 1.25 NA Intergenic Intergenic 226180 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 240.75-27 chr4 31143351 31143597 + 1.25 NA 3' UTR (NM_001173523, exon 3 of 3) 3' UTR (NM_001173523, exon 3 of 3) -27670 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 152-11 chr10 51378830 51379027 + 1.25 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 79355 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 219.25-17 chr2 201529319 201529691 + 1.25 NA intron (NM_001168216, intron 11 of 12) L1MA7|LINE|L1 77765 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 163.5-65 chr5 20234279 20234482 + 1.25 NA intron (NM_001291956, intron 2 of 14) L1MEd|LINE|L1 -71171 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 165.25-35 chr3 9011872 9012037 + 1.25 NA intron (NM_014850, intron 17 of 21) LTR84b|LTR|ERVL -48482 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 159.5-76 chr7 82258884 82259054 + 1.25 NA intron (NM_000722, intron 3 of 38) AluSz|SINE|Alu 184808 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 162.25-46 chr8 17214549 17214765 + 1.25 NA intron (NM_016353, intron 10 of 12) AluJo|SINE|Alu 31801 NM_001322089 29883 Hs.587465 NM_013354 ENSG00000198791 CNOT7 CAF-1|CAF1|Caf1a|hCAF-1 CCR4-NOT transcription complex subunit 7 protein-coding 226.75-21 chr5 30906102 30906391 + 1.25 NA Intergenic MIR|SINE|MIR -287440 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 137.5-113 chr8 65953076 65953317 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie -61782 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 164.5-22 chr15 64810455 64810612 + 1.25 NA Intergenic Intergenic 15114 NM_001286496 80119 Hs.112160 NM_025049 ENSG00000140451 PIF1 C15orf20|PIF PIF1 5'-to-3' DNA helicase protein-coding 210-12 chr16 86644589 86644947 + 1.25 NA Intergenic Intergenic 66259 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 153.75-2 chr1 25353145 25353271 + 1.25 NA intron (NM_014313, intron 5 of 6) intron (NM_014313, intron 5 of 6) 14874 NM_014313 23585 Hs.705699 NM_014313 ENSG00000183726 TMEM50A IFNRC|SMP1 transmembrane protein 50A protein-coding 115.25-36 chr16 49552563 49552687 + 1.25 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -34040 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 281.75-4 chr15 57568320 57568621 + 1.25 NA Intergenic Intergenic -23434 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 254.5-31 chr7 26776765 26777079 + 1.25 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 80801 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 200-18 chr15 85423453 85423691 + 1.25 NA intron (NM_007200, intron 1 of 36) Tigger1|DNA|TcMar-Tigger 42969 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 159-53 chr5 170920137 170920333 + 1.25 NA intron (NM_022897, intron 11 of 27) L1ME1|LINE|L1 58217 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 203.25-41 chr5 93085590 93085918 + 1.25 NA Intergenic Intergenic 485589 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 219.5-33 chr3 156721665 156722098 + 1.25 NA Intergenic Intergenic 45217 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 239.75-24 chr3 159944960 159945234 + 1.25 NA intron (NR_108088, intron 9 of 9) intron (NR_108088, intron 9 of 9) -43738 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 257-22 chr8 117342645 117342927 + 1.25 NA Intergenic Intergenic -177927 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 171.25-45 chr5 91902518 91902726 + 1.25 NA Intergenic Intergenic -519305 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 283-10 chr3 34010961 34011405 + 1.25 NA Intergenic Intergenic 212553 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 138-28 chr17 43201140 43201266 + 1.25 NA intron (NM_005899, intron 17 of 20) intron (NM_005899, intron 17 of 20) -10672 NM_145041 113277 Hs.536474 NM_145041 ENSG00000184988 TMEM106A - transmembrane protein 106A protein-coding 267.5-12 chr2 6953370 6953667 + 1.25 NA non-coding (NR_146069, exon 4 of 4) non-coding (NR_146069, exon 4 of 4) 20434 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 221.5-9 chr12 123625622 123625872 + 1.25 NA intron (NM_001414, intron 6 of 8) intron (NM_001414, intron 6 of 8) 7939 NM_001414 1967 Hs.741273 NM_001414 ENSG00000111361 EIF2B1 EIF2B|EIF2BA eukaryotic translation initiation factor 2B subunit alpha protein-coding 146.75-45 chr5 34487592 34487850 + 1.25 NA Intergenic Intergenic -168607 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 147.75-63 chr5 59274912 59275088 + 1.25 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 1115 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 188.25-37 chr3 106557027 106557287 + 1.25 NA Intergenic Intergenic 683481 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 132.5-107 chr7 99398680 99398829 + 1.25 NA intron (NM_014891, intron 4 of 5) L3|LINE|CR1 9843 NM_014891 11333 Hs.632296 NM_014891 ENSG00000106244 PDAP1 HASPP28|PAP|PAP1 PDGFA associated protein 1 protein-coding 143.75-28 chr12 95228042 95228262 + 1.25 NA intron (NM_001352088, intron 2 of 12) intron (NM_001352088, intron 2 of 12) 10345 NM_001352109 55591 Hs.24135 NM_017599 ENSG00000028203 VEZT VEZATIN vezatin, adherens junctions transmembrane protein protein-coding 149.5-31 chr14 48247600 48247769 + 1.25 NA Intergenic LTR37-int|LTR|ERV1 -452670 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 260.75-5 chr14 39802252 39802653 + 1.25 NA Intergenic Intergenic -369952 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 186-21 chr18 1075827 1076195 + 1.25 NA Intergenic Intergenic -148018 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 161.5-7 chr1 159076818 159077082 + 1.25 NA promoter-TSS (NM_004833) promoter-TSS (NM_004833) -49 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 155.5-17 chr10 102285349 102285503 + 1.25 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 39894 NM_001199378 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 231-30 chr5 104772432 104772796 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -326860 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 134.25-50 chr22 28057234 28057510 + 1.25 NA intron (NM_001145418, intron 12 of 22) L1ME2z|LINE|L1 -136760 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 224.25-19 chr2 30083763 30084014 + 1.25 NA Intergenic L2|LINE|L2 -63119 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 175.25-49 chr6 104880757 104881058 + 1.25 NA Intergenic L1MEb|LINE|L1 -20988 NR_104424 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 192-14 chr12 78135855 78136037 + 1.25 NA intron (NM_001024383, intron 18 of 39) intron (NM_001024383, intron 18 of 39) 223800 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 127.25-50 chr2 80793149 80793295 + 1.25 NA Intergenic Intergenic 479843 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 194.75-27 chr3 80800770 80800948 + 1.25 NA Intergenic L1MA4A|LINE|L1 30155 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 168.25-2 chr1 101610443 101610585 + 1.25 NA Intergenic L1M2|LINE|L1 236566 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 268.5-25 chr5 24800692 24800979 + 1.25 NA Intergenic L1ME2z|LINE|L1 39748 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 145.5-58 chr21 27366058 27366230 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -356235 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 143.5-57 chr2 196806913 196807062 + 1.25 NA intron (NM_213608, intron 2 of 2) intron (NM_213608, intron 2 of 2) 3289 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 147.25-26 chr2 55350102 55350332 + 1.25 NA intron (NM_001254943, intron 8 of 33) intron (NM_001254943, intron 8 of 33) 67898 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 209.25-16 chr2 36605840 36606176 + 1.25 NA Intergenic Intergenic -7840 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 192.5-26 chr19 15525437 15525685 + 1.25 NA intron (NM_173483, intron 3 of 13) intron (NM_173483, intron 3 of 13) 17036 NM_173483 126410 Hs.156452 NM_173483 ENSG00000171954 CYP4F22 ARCI5|INLNE|LI3 cytochrome P450 family 4 subfamily F member 22 protein-coding 131.25-81 chr7 42982974 42983170 + 1.25 NA Intergenic MIR3|SINE|MIR 50696 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 221.25-11 chr17 70034463 70034688 + 1.25 NA Intergenic Intergenic -16696 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 147.25-15 chr14 63621864 63622011 + 1.25 NA intron (NM_080666, intron 2 of 2) L1ME1|LINE|L1 19934 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 165.75-41 chr3 31858839 31859111 + 1.25 NA intron (NM_017784, intron 3 of 11) intron (NM_017784, intron 3 of 11) -122775 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 327.25-8 chr7 31605547 31605997 + 1.25 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) 52770 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 113.75-67 chr21 34735299 34735464 + 1.25 NA intron (NR_024351, intron 1 of 5) intron (NR_024351, intron 1 of 5) 1801 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 211.75-21 chr2 124841719 124842043 + 1.25 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 816594 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 143.5-100 chr8 87517214 87517500 + 1.25 NA Intergenic Intergenic 356658 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 127.25-75 chr4 145686030 145686170 + 1.25 NA intron (NM_001080531, intron 1 of 5) L1MB4|LINE|L1 5896 NM_001080531 646603 NM_001080531 ENSG00000237136 C4orf51 - chromosome 4 open reading frame 51 protein-coding 161.5-24 chr11 131710870 131711093 + 1.25 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -47425 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 270.5-11 chr17 59318343 59318683 + 1.25 NA Intergenic Intergenic -13142 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 265.5-16 chr2 73336965 73337278 + 1.25 NA Intergenic L1M4|LINE|L1 -43573 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 289.75-7 chr16 34589428 34590053 + 1.25 NA Intergenic Intergenic -208260 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 420.5 chr1 225340051 225340464 + 1.25 NA intron (NM_001367479, intron 68 of 85) intron (NM_001367479, intron 68 of 85) 87781 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 175-27 chr2 148371030 148371208 + 1.25 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -273632 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 118-36 chr18 11170541 11170691 + 1.25 NA Intergenic L1MB7|LINE|L1 -21854 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 115-46 chr20 54093588 54093825 + 1.25 NA Intergenic Intergenic -22941 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 180.5-57 chr3 37153649 37153879 + 1.25 NA intron (NM_006309, intron 1 of 27) intron (NM_006309, intron 1 of 27) 20818 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 176.25-8 chr11 72287286 72287495 + 1.25 NA 3' UTR (NM_001258392, exon 16 of 16) 3' UTR (NM_001258392, exon 16 of 16) -43214 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 122.75-17 chr12 30009307 30009423 + 1.25 NA Intergenic Charlie18a|DNA|hAT-Charlie -224606 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 370.25-3 chr10 43152474 43152844 + 1.25 NA intron (NM_018590, intron 1 of 7) intron (NM_018590, intron 1 of 7) -2238 NM_001319656 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 193-15 chr13 69330800 69330981 + 1.25 NA Intergenic Tigger13a|DNA|TcMar-Tigger 108544 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 241.75-9 chr14 60494285 60494714 + 1.25 NA Intergenic Intergenic -8436 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 211.75-8 chr10 112029908 112030212 + 1.25 NA Intergenic Intergenic 153705 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 212.25-2 chr1 178828108 178828433 + 1.25 NA intron (NM_152663, intron 7 of 19) Tigger3a|DNA|TcMar-Tigger 42807 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 233.5-47 chr6 152219518 152219792 + 1.25 NA intron (NM_182961, intron 119 of 145) intron (NM_182961, intron 119 of 145) -34277 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 240.75-25 chr3 63935699 63936013 + 1.25 NA intron (NM_001177387, intron 3 of 12) Tigger8|DNA|TcMar-Tigger -24084 NR_148359 100861563 NR_148359 ENSG00000280620 SCAANT1 ATXN7-AS1 SCA7/ATXN7 antisense RNA 1 ncRNA 208.25-6 chr10 58530298 58530734 + 1.25 NA intron (NM_001080512, intron 1 of 20) LTR16E2|LTR|ERVL 17644 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 163.5-4 chr1 70577681 70577850 + 1.25 NA Intergenic MER31-int|LTR|ERV1 -128688 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 234.25-24 chr3 146974354 146974669 + 1.25 NA Intergenic Intergenic 52588 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 245.5-7 chr14 51257165 51257652 + 1.25 NA 3' UTR (NM_030755, exon 8 of 8) 3' UTR (NM_030755, exon 8 of 8) 17161 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 272.25-4 chr10 108927085 108927589 + 1.25 NA Intergenic Cheshire|DNA|hAT-Charlie -858044 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 243.75-30 chr9 104247871 104248141 + 1.25 NA Intergenic Intergenic -22223 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 279.25-22 chr9 22114377 22114636 + 1.25 NA intron (NR_003529, intron 16 of 18) LTR16B2|LTR|ERVL -105193 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 163-20 chr18 61600568 61600731 + 1.25 NA Intergenic L2a|LINE|L2 -147527 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 205.75-14 chr15 61891278 61891607 + 1.25 NA intron (NM_001018088, intron 66 of 81) intron (NM_001018088, intron 66 of 81) 161524 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 357.75-4 chr10 45529750 45530168 + 1.25 NA intron (NM_001282866, intron 2 of 7) L1PB4|LINE|L1 5412 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 220.75-9 chr15 70702519 70702765 + 1.25 NA promoter-TSS (NM_001008224) promoter-TSS (NM_001008224) -360 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 205-9 chr12 75114802 75115283 + 1.25 NA intron (NM_001260499, intron 2 of 3) AluYe5|SINE|Alu 94706 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 211.25-12 chr14 69237248 69237617 + 1.25 NA intron (NM_001193360, intron 8 of 9) intron (NM_001193360, intron 8 of 9) -22726 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 175.25-40 chr3 122427295 122427454 + 1.25 NA intron (NR_026698, intron 14 of 14) intron (NR_026698, intron 14 of 14) 11168 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 131-11 chr10 13931065 13931200 + 1.25 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 40764 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 147.5-73 chr6 108492451 108492581 + 1.25 NA intron (NM_001323005, intron 10 of 11) intron (NM_001323005, intron 10 of 11) -67309 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 160.5-10 chr11 81590866 81591075 + 1.25 NA Intergenic MSTB1|LTR|ERVL-MaLR 299866 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 235-29 chr20 52894412 52894772 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -77766 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 258.75-9 chr13 45026496 45026811 + 1.25 NA intron (NM_001316952, intron 7 of 8) Charlie2b|DNA|hAT-Charlie 37115 NM_001316952 55425 Hs.731811 NM_018559 ENSG00000133114 GPALPP1 AD029|KIAA1704|LSR7|bA245H20.2 GPALPP motifs containing 1 protein-coding 204.75-10 chr12 130707235 130707450 + 1.25 NA intron (NM_001351226, intron 1 of 21) L2a|LINE|L2 8957 NM_001351230 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 191-2 chr1 101918042 101918254 + 1.25 NA intron (NM_058170, intron 1 of 5) L2c|LINE|L2 46136 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 129-5 chr1 199873237 199873438 + 1.25 NA Intergenic Intergenic -154373 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 122.75-71 chr6 47506983 47507130 + 1.25 NA intron (NM_012120, intron 2 of 17) Tigger1|DNA|TcMar-Tigger 29267 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 189.25-48 chr8 122779738 122779917 + 1.25 NA Intergenic Intergenic -1828 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 223.75 chr1 21227325 21227568 + 1.25 NA intron (NM_001113347, intron 13 of 16) MIRb|SINE|MIR -50549 NM_001198801 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 179-6 chr10 20415941 20416114 + 1.25 NA Intergenic Intergenic -135943 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 218.5-9 chr11 57072072 57072284 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 34644 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 183-74 chrX 28587670 28587878 + 1.25 NA 5' UTR (NM_014271, exon 1 of 11) 5' UTR (NM_014271, exon 1 of 11) 328 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 180-34 chr19 30262253 30262416 + 1.25 NA Intergenic Intergenic -110050 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 171.75-10 chr11 58124338 58124577 + 1.25 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) -5013 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 195-19 chr15 26494223 26494513 + 1.25 NA Intergenic Intergenic 134722 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 144.25-74 chr7 148738428 148738553 + 1.25 NA intron (NM_001370660, intron 2 of 21) intron (NM_001370660, intron 2 of 21) 38780 NM_001370664 8454 Hs.146806 NM_003592 ENSG00000055130 CUL1 - cullin 1 protein-coding 226-28 chr7 26796698 26796909 + 1.25 NA intron (NM_003930, intron 4 of 12) Tigger2b_Pri|DNA|TcMar-Tigger 60920 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 342.25-3 chr22 48707369 48707832 + 1.25 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) -72695 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 254-15 chr5 117254974 117255235 + 1.25 NA Intergenic Intergenic -160408 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 219.75-43 chr8 10992979 10993257 + 1.25 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 42184 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 191.75-33 chr5 76987630 76987848 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 34694 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 282-12 chr15 68477558 68477903 + 1.25 NA Intergenic L1MD1|LINE|L1 -40643 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 186.5-22 chr14 90967084 90967316 + 1.25 NA intron (NM_001322238, intron 1 of 14) intron (NM_001322238, intron 1 of 14) 92924 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 189.25-31 chr3 194927276 194927608 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -158733 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 165.5-5 chr1 226189495 226189633 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 -2823 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 160.25 chr1 114477104 114477304 + 1.25 NA intron (NM_015906, intron 1 of 19) L1M4a2|LINE|L1 33999 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 221.5-46 chr7 52570478 52570693 + 1.25 NA Intergenic Intergenic -465048 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 233.75-23 chr3 123546913 123547252 + 1.25 NA intron (NM_001329786, intron 2 of 5) intron (NM_001329786, intron 2 of 5) 37535 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 192-9 chr11 110914150 110914405 + 1.25 NA Intergenic L1M5|LINE|L1 183041 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 191-27 chr2 124992361 124992661 + 1.25 NA Intergenic MER41-int|LTR|ERV1 967224 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 118.5-48 chr18 8250088 8250194 + 1.25 NA intron (NM_001105244, intron 17 of 32) intron (NM_001105244, intron 17 of 32) 116893 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 215.5-18 chr15 39569442 39569643 + 1.25 NA Intergenic MLT1N2|LTR|ERVL-MaLR -11537 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 283.5-9 chr2 138837540 138837791 + 1.25 NA Intergenic Intergenic -57275 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 145-7 chr10 115085034 115085167 + 1.25 NA Intergenic Intergenic -8265 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 207-15 chr14 64865825 64866034 + 1.25 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 13978 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 293.5-7 chr17 13991410 13991699 + 1.25 NA Intergenic Intergenic -32944 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 191.5-35 chr2 173416256 173416542 + 1.25 NA Intergenic Intergenic 61527 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 268.75-10 chr14 48506623 48507184 + 1.25 NA Intergenic L1M5|LINE|L1 -711889 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 174.5-89 chrX 95975589 95975974 + 1.25 NA Intergenic Intergenic 362121 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 125-11 chr1 219807261 219807511 + 1.25 NA Intergenic Intergenic 121265 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 125.25-20 chr13 65227753 65227897 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie -638222 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 194.25-26 chr2 65217008 65217312 + 1.25 NA Intergenic AluJb|SINE|Alu -10535 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 194-39 chr8 51193646 51193925 + 1.25 NA Intergenic L1ME3|LINE|L1 615660 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 197.75-54 chr9 81037897 81038083 + 1.25 NA Intergenic L2c|LINE|L2 651545 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 125.25-6 chr10 62235093 62235316 + 1.25 NA intron (NM_145307, intron 6 of 11) L1MC5a|LINE|L1 33640 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 238.5-24 chr4 2931538 2931754 + 1.25 NA exon (NM_001120, exon 8 of 12) exon (NM_001120, exon 8 of 12) 2591 NM_001120 10227 Hs.632581 NM_001120 ENSG00000109736 MFSD10 TETRAN|TETTRAN major facilitator superfamily domain containing 10 protein-coding 281.75-10 chr2 151214966 151215227 + 1.25 NA Intergenic Intergenic 46767 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 141.75-9 chr10 69540354 69540510 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR 32990 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 193.5-9 chr10 75524175 75524428 + 1.25 NA intron (NM_001305581, intron 2 of 6) MIR|SINE|MIR -28157 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 156.5-76 chr7 80803293 80803678 + 1.25 NA intron (NM_006379, intron 8 of 17) intron (NM_006379, intron 8 of 17) 115566 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 194.75-30 chr3 152320530 152320822 + 1.25 NA intron (NM_207296, intron 1 of 7) (T)n|Simple_repeat|Simple_repeat 20314 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 187.25-45 chr4 101148072 101148357 + 1.25 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 92658 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 117.5-94 chr8 138577530 138577671 + 1.25 NA Intergenic Intergenic -79870 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 146-4 chr10 27033598 27033714 + 1.25 NA intron (NM_014915, intron 24 of 33) intron (NM_014915, intron 24 of 33) 66842 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 174.75-53 chr7 156375538 156375756 + 1.25 NA Intergenic L1M7|LINE|L1 69941 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 153.5-63 chr3 46069773 46069954 + 1.25 NA Intergenic L1M2|LINE|L1 -42380 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 337-3 chr12 37948804 37949143 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -367801 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 218-46 chr8 102143338 102143634 + 1.25 NA Intergenic L1MEc|LINE|L1 18054 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 237-40 chrX 40672326 40672653 + 1.25 NA intron (NM_004229, intron 22 of 30) intron (NM_004229, intron 22 of 30) -24928 NM_001330455 159013 Hs.495961 NM_144970 ENSG00000185753 CXorf38 - chromosome X open reading frame 38 protein-coding 114.75-29 chr14 52681586 52681738 + 1.25 NA intron (NM_014584, intron 3 of 15) intron (NM_014584, intron 3 of 15) 13896 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 167-54 chr5 144811269 144811428 + 1.25 NA Intergenic Intergenic 605957 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 243.5 chr1 65986179 65986605 + 1.25 NA intron (NM_002600, intron 3 of 16) L2c|LINE|L2 -6224 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 244.25-5 chr13 97277828 97278108 + 1.25 NA intron (NM_144778, intron 2 of 8) intron (NM_144778, intron 2 of 8) 55635 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 267.25 chr1 52909103 52909352 + 1.25 NA intron (NM_001319958, intron 4 of 9) L1MB4|LINE|L1 12513 NM_001319958 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 178.5-69 chr6 106275426 106275631 + 1.25 NA intron (NM_001286111, intron 2 of 4) intron (NM_001286111, intron 2 of 4) 40738 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 169-14 chr13 69300044 69300237 + 1.25 NA intron (NR_125752, intron 2 of 3) intron (NR_125752, intron 2 of 3) 77794 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 180.25-32 chr20 1090324 1090514 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -22810 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 170.25-28 chr16 80783564 80783712 + 1.25 NA intron (NM_152342, intron 1 of 6) L1MB5|LINE|L1 20960 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 151.75-12 chr11 35104613 35104769 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 33341 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 186.25-19 chr15 86300951 86301104 + 1.25 NA intron (NR_046012, intron 3 of 3) intron (NR_046012, intron 3 of 3) 15941 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 208.25-22 chr3 21582945 21583141 + 1.25 NA intron (NM_024697, intron 2 of 7) AluSg|SINE|Alu 40254 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 307.5-13 chr6 56334033 56334448 + 1.25 NA intron (NM_001318752, intron 1 of 28) MER5A|DNA|hAT-Charlie 59888 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 148.5-82 chr5 98629483 98629709 + 1.25 NA Intergenic L1MA5|LINE|L1 -139036 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 239-6 chr1 235714792 235715021 + 1.25 NA intron (NM_000081, intron 42 of 52) L1MB7|LINE|L1 -64152 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 122-58 chr5 7981891 7982058 + 1.25 NA Intergenic Intergenic 112826 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 183.5-22 chr15 58351135 58351333 + 1.25 NA Intergenic Intergenic -80757 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 128.75-54 chr22 45239265 45239431 + 1.25 NA intron (NM_001009880, intron 1 of 9) intron (NM_001009880, intron 1 of 9) 1421 NM_001009880 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 158-57 chr6 63278766 63278941 + 1.25 NA 3' UTR (NM_016571, exon 4 of 4) 3' UTR (NM_016571, exon 4 of 4) 41124 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 235.5-2 chr1 60273489 60273838 + 1.25 NA Intergenic Intergenic -199893 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 147-13 chr11 7030230 7030470 + 1.25 NA intron (NM_176822, intron 1 of 11) L2a|LINE|L2 9881 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 135.75-79 chr5 122668695 122668803 + 1.25 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) 61811 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 200.75-35 chr6 62175603 62175854 + 1.25 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 110497 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 166.5-57 chr2 75984183 75984407 + 1.25 NA Intergenic Intergenic -273380 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 176.75-53 chr8 108802466 108802808 + 1.25 NA Intergenic L1MB1|LINE|L1 -15043 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 153.25-60 chr9 86493868 86494081 + 1.25 NA Intergenic Intergenic -139564 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 222.25-30 chr8 110957814 110958090 + 1.25 NA intron (NR_125417, intron 5 of 5) intron (NR_125417, intron 5 of 5) 69481 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 237.5-24 chr22 25489702 25490233 + 1.25 NA Intergenic Intergenic 34321 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 345.25-7 chr9 114046617 114047314 + 1.25 NA intron (NM_001318042, intron 13 of 14) intron (NM_001318042, intron 13 of 14) 31335 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 263-11 chr17 78878984 78879307 + 1.25 NA intron (NM_003255, intron 1 of 4) intron (NM_003255, intron 1 of 4) 24056 NM_001243541 100653515 Hs.734636 NM_001243540 ENSG00000178404 CEP295NL DDC8|KIAA1731NL CEP295 N-terminal like protein-coding 277.25-10 chr12 122878783 122879059 + 1.25 NA intron (NM_024667, intron 1 of 3) AluSz|SINE|Alu 17203 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 213.75-20 chr15 80473056 80473241 + 1.25 NA intron (NM_014862, intron 4 of 18) MIRb|SINE|MIR 68766 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 127.25-13 chr10 52860864 52861061 + 1.25 NA Intergenic Intergenic -89262 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 225.75-9 chr12 13990403 13990737 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -10214 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 154.25-36 chr2 211415 211707 + 1.25 NA Intergenic MIRb|SINE|MIR 44779 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 223-31 chr4 40942022 40942284 + 1.25 NA intron (NM_001166050, intron 7 of 17) intron (NM_001166050, intron 7 of 17) -84961 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 292-4 chr14 20059642 20059928 + 1.25 NA promoter-TSS (NM_001004717) promoter-TSS (NM_001004717) -260 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 215.25-42 chr9 111248313 111248561 + 1.25 NA Intergenic Intergenic 22777 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 187-52 chr6 46911052 46911290 + 1.25 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 7700 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 258.25-25 chr8 113786080 113786483 + 1.25 NA Intergenic Intergenic -349342 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 325.25-14 chr6 121989304 121989786 + 1.25 NA Intergenic L1MA3|LINE|L1 -410006 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 317.75-2 chr2 165112495 165113062 + 1.25 NA intron (NM_006922, intron 21 of 27) intron (NM_006922, intron 21 of 27) 91272 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 153.5-34 chr16 6062390 6062586 + 1.25 NA intron (NM_018723, intron 1 of 15) MER21B|LTR|ERVL 42785 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 175-49 chr5 106650635 106650871 + 1.25 NA Intergenic Intergenic 360261 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 143.75-16 chr10 99706205 99706361 + 1.25 NA 3' UTR (NM_001349963, exon 13 of 13) 3' UTR (NM_001349963, exon 13 of 13) -25951 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 230.5-62 chr9 136757684 136757990 + 1.25 NA intron (NM_001345934, intron 1 of 6) intron (NM_001345934, intron 1 of 6) 442 NM_178469 138307 Hs.323991 NM_178469 ENSG00000204001 LCN8 EP17|LCN5 lipocalin 8 protein-coding 161.75-57 chr7 100796548 100796752 + 1.25 NA intron (NR_111919, intron 44 of 46) AluSx1|SINE|Alu -30219 NM_001363494 56996 Hs.521087 NM_020246 ENSG00000146828 SLC12A9 CCC6|CIP1|WO3.3|hCCC6 solute carrier family 12 member 9 protein-coding 114-32 chr14 41155885 41156037 + 1.25 NA Intergenic Intergenic 201250 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 188.5-38 chr3 179618423 179618614 + 1.25 NA exon (NM_002492, exon 5 of 6) exon (NM_002492, exon 5 of 6) 13724 NM_002492 4711 Hs.730674 NM_002492 ENSG00000136521 NDUFB5 CISGDH|SGDH NADH:ubiquinone oxidoreductase subunit B5 protein-coding 153-22 chr2 166136480 166136689 + 1.25 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) -8564 NM_001353955 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 194.25-25 chr2 52219378 52219605 + 1.25 NA intron (NR_135237, intron 7 of 10) L1M5|LINE|L1 -151157 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 212-37 chr5 63829937 63830242 + 1.25 NA Intergenic LTR101_Mam|LTR|ERVL 132203 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 380.75-4 chr3 116959352 116959693 + 1.25 NA Intergenic Intergenic 38091 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 247-14 chr19 13515450 13515693 + 1.25 NA Intergenic L1MC4|LINE|L1 -9092 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 198.25-31 chr4 30793485 30793726 + 1.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 73236 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 180.75-11 chr10 23185503 23185694 + 1.25 NA Intergenic Intergenic -6714 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 118-80 chr9 114821790 114821940 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15826 NM_005118 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 209.25-41 chr6 102866127 102866392 + 1.25 NA Intergenic L1PB3|LINE|L1 1467274 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 300-3 chr10 25318939 25319315 + 1.25 NA intron (NM_020752, intron 2 of 10) L2c|LINE|L2 -142851 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 231.5-41 chr6 76177765 76178101 + 1.25 NA Intergenic L1PA16|LINE|L1 -105255 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 207.5-11 chr11 117347015 117347331 + 1.25 NA intron (NM_001271933, intron 3 of 31) L1ME4b|LINE|L1 19319 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 122.25-88 chr8 4949879 4950074 + 1.25 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 44938 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 194.75-22 chr2 171869174 171869377 + 1.25 NA intron (NR_047549, intron 2 of 16) L1MB7|LINE|L1 24969 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 149.75-44 chr3 186049671 186049852 + 1.25 NA intron (NM_004454, intron 12 of 12) intron (NM_004454, intron 12 of 12) 59328 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 176.5-61 chr3 90007646 90007859 + 1.25 NA Intergenic Intergenic 900131 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 221.5-13 chr14 69987620 69987931 + 1.25 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 9642 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 176 chr1 9203901 9204122 + 1.25 NA Intergenic MIR3|SINE|MIR -21673 NR_132742 106614088 Hs.551837 NR_132742 ENSG00000228526 MIR34AHG - MIR34A host gene ncRNA 295-9 chr3 160408324 160408587 + 1.25 NA intron (NM_001002800, intron 5 of 23) intron (NM_001002800, intron 5 of 23) 3710 NR_029525 406951 NR_029525 ENSG00000198987 MIR16-2 MIRN16-2|mir-16-2|mir-16-3 microRNA 16-2 ncRNA 171.25-61 chr9 38664379 38664625 + 1.25 NA Intergenic L1MC|LINE|L1 43414 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 157.5-16 chr12 24357054 24357201 + 1.25 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 133856 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 228.5-24 chr2 226684269 226684635 + 1.25 NA Intergenic Intergenic -25659 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 360-10 chr9 38662446 38662796 + 1.25 NA Intergenic Intergenic 41533 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 231.25-10 chr12 52953562 52953825 + 1.25 NA TTS (NM_199187) TTS (NM_199187) -3833 NR_045962 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 241.75-28 chr8 111337378 111337662 + 1.25 NA Intergenic Intergenic -39119 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 248.75-10 chr2 46501575 46501932 + 1.25 NA Intergenic Intergenic 22188 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 157.75-13 chr10 85143186 85143316 + 1.25 NA Intergenic Intergenic 55654 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 259.75-2 chr11 23504120 23504508 + 1.25 NA Intergenic Intergenic -85124 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 253-6 chr11 102464870 102465219 + 1.25 NA Intergenic Intergenic -2211 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 183.75-50 chr7 55636610 55636984 + 1.25 NA Intergenic L1M3f|LINE|L1 51235 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 271-7 chr12 64916089 64916314 + 1.25 NA intron (NR_033988, intron 2 of 2) intron (NR_033988, intron 2 of 2) 32427 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 163.5-44 chr20 8548413 8548602 + 1.25 NA intron (NM_182734, intron 3 of 32) (CCTT)n|Simple_repeat|Simple_repeat -282678 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 120.25-37 chr2 100569337 100569488 + 1.25 NA intron (NM_024065, intron 3 of 5) intron (NM_024065, intron 3 of 5) 6419 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 301.5-8 chr18 48535938 48536345 + 1.25 NA Intergenic Intergenic -2890 NM_014772 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 172.25-53 chr4 36089718 36089873 + 1.25 NA intron (NR_146894, intron 28 of 32) L1ME2|LINE|L1 154144 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 274.25-8 chr2 150325412 150325676 + 1.25 NA Intergenic Intergenic -68537 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 292-13 chr5 75936823 75937213 + 1.25 NA Intergenic Tigger6a|DNA|TcMar-Tigger -146365 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 134.25-90 chr7 111522419 111522659 + 1.25 NA intron (NM_032549, intron 1 of 5) L1MA8|LINE|L1 39752 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 179.5-64 chr3 55000956 55001151 + 1.25 NA intron (NM_018398, intron 31 of 37) MIR|SINE|MIR -33951 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 235.75-6 chr10 114111891 114112324 + 1.25 NA Intergenic AluSx1|SINE|Alu 62072 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 189.75-40 chr5 56775588 56775898 + 1.25 NA Intergenic Intergenic -2872 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 223.25-32 chr8 125891611 125891897 + 1.25 NA Intergenic L1PB4|LINE|L1 59443 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 224.75-18 chr5 42505955 42506222 + 1.25 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -41955 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 240-15 chr18 1923963 1924201 + 1.25 NA Intergenic MER4B-int|LTR|ERV1 -564453 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 242.25-2 chr10 55501402 55501769 + 1.25 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -97457 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 139.25-87 chr9 92741736 92742008 + 1.25 NA intron (NM_001003800, intron 1 of 6) L1M4|LINE|L1 22961 NM_015250 23299 Hs.436939 NM_015250 ENSG00000185963 BICD2 SMALED2|SMALED2A|SMALED2B|bA526D8.1 BICD cargo adaptor 2 protein-coding 253-25 chr8 128963213 128963646 + 1.25 NA intron (NR_145483, intron 2 of 3) intron (NR_145483, intron 2 of 3) 2572 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 127.25-55 chr20 32883521 32883764 + 1.25 NA intron (NM_001143967, intron 5 of 26) MER21-int|LTR|ERVL 24719 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 293-9 chr15 93766264 93766595 + 1.25 NA Intergenic MIRb|SINE|MIR -90131 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 317.75 chr1 184988456 184988827 + 1.25 NA Intergenic MLT2C1|LTR|ERVL -12886 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 127-53 chr20 8201500 8201645 + 1.25 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) -47132 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 133.5-110 chr8 23581873 23582029 + 1.25 NA Intergenic Intergenic 52995 NM_001317812 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 218-44 chr7 94242768 94243077 + 1.25 NA Intergenic L1MC5|LINE|L1 149270 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 179.5-33 chr14 55503720 55503949 + 1.25 NA Intergenic Intergenic -63289 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 253.25-11 chr17 48880918 48881276 + 1.25 NA intron (NR_135674, intron 2 of 3) intron (NR_135674, intron 2 of 3) -11690 NM_001002027 516 Hs.80986 NM_005175 ENSG00000159199 ATP5MC1 ATP5A|ATP5G|ATP5G1 ATP synthase membrane subunit c locus 1 protein-coding 185.5-61 chr5 60910757 60910938 + 1.25 NA intron (NM_001007234, intron 4 of 5) L1MEg1|LINE|L1 34223 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 114.25-98 chr7 73476336 73476500 + 1.25 NA intron (NM_001370402, intron 7 of 18) intron (NM_001370402, intron 7 of 18) 42640 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 282-3 chr1 119899124 119899411 + 1.25 NA Intergenic Intergenic -2752 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 135.75-99 chr7 123845725 123845857 + 1.25 NA intron (NM_012269, intron 1 of 4) L1PBa1|LINE|L1 622 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 175.75-4 chr12 498324 498529 + 1.25 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 38487 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 170.25-39 chr20 33962320 33962474 + 1.25 NA Intergenic Intergenic -31514 NM_007367 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 362.75-6 chrX 56979793 56980302 + 1.25 NA intron (NR_027139, intron 3 of 4) intron (NR_027139, intron 3 of 4) 15494 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 326.25-11 chr20 25411501 25412007 + 1.25 NA intron (NM_021067, intron 1 of 6) AluSq2|SINE|Alu 4071 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 159.75-65 chr8 115288477 115288626 + 1.25 NA Intergenic Intergenic 379462 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 208.25-23 chr3 139762050 139762407 + 1.25 NA Intergenic Intergenic -84178 NM_001200047 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 226.5-21 chr18 13232626 13232900 + 1.25 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -6780 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 212.5-11 chr14 23379742 23379975 + 1.25 NA TTS (NM_001037288) TTS (NM_001037288) 2812 NM_001288745 116173 Hs.99272 NM_138460 ENSG00000166091 CMTM5 CKLFSF5 CKLF like MARVEL transmembrane domain containing 5 protein-coding 156.75-67 chr4 118952556 118952702 + 1.25 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 63775 NM_133477 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 148.25-29 chr18 10452564 10452737 + 1.25 NA Intergenic Intergenic -1985 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 224.5-22 chr2 137132555 137132834 + 1.25 NA intron (NM_001316349, intron 5 of 27) L3|LINE|CR1 367149 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 142.5-87 chr7 48981695 48981822 + 1.25 NA Intergenic L1MEc|LINE|L1 57211 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 330.75-6 chr2 225356377 225356829 + 1.25 NA Intergenic Intergenic -43107 NM_001371273 138.75-54 chr4 64265232 64265415 + 1.25 NA Intergenic MER41-int|LTR|ERV1 144127 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 210.25-20 chr2 5849234 5849450 + 1.25 NA Intergenic Intergenic -36746 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 216.25-29 chr5 27782302 27782660 + 1.25 NA Intergenic Intergenic 310189 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 274.75-19 chr8 48731862 48732305 + 1.25 NA intron (NM_024593, intron 1 of 5) intron (NM_024593, intron 1 of 5) 3185 NR_024605 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 271.5-7 chr14 70718203 70718641 + 1.25 NA Intergenic Intergenic 19724 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 194-14 chr13 31748090 31748390 + 1.25 NA intron (NM_130806, intron 1 of 17) L1ME3B|LINE|L1 8698 NM_001166058 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 181.25-36 chr22 38200138 38200389 + 1.25 NA Intergenic L2a|LINE|L2 -1669 NM_001161572 23764 Hs.517617 NM_012323 ENSG00000185022 MAFF U-MAF|hMafF MAF bZIP transcription factor F protein-coding 155.25-27 chr17 75647564 75647806 + 1.25 NA 3' UTR (NM_001162997, exon 2 of 2) 3' UTR (NM_001162997, exon 2 of 2) 1434 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110|ELN small integral membrane protein 6 protein-coding 150.25-67 chr6 126960422 126960706 + 1.25 NA Intergenic Intergenic -158107 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 232.5-41 chr5 78493261 78493708 + 1.25 NA intron (NM_005779, intron 4 of 4) L2a|LINE|L2 132867 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 288.25-12 chr20 23003809 23004258 + 1.25 NA Intergenic Intergenic -31387 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 136-24 chr16 85759720 85759925 + 1.25 NA Intergenic G-rich|Low_complexity|Low_complexity -8726 NR_161453 404550 Hs.461655 NM_206967 ENSG00000154102 C16orf74 - chromosome 16 open reading frame 74 protein-coding 125-55 chr2 156021385 156021587 + 1.25 NA non-coding (NR_110249, exon 4 of 4) non-coding (NR_110249, exon 4 of 4) 233445 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 242-24 chr2 145577680 145577945 + 1.25 NA Intergenic AluJb|SINE|Alu 909845 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 317.75-3 chr6 144026347 144026639 + 1.25 NA intron (NM_001289040, intron 1 of 5) intron (NM_001289040, intron 1 of 5) -17763 NR_002768 57061 Hs.657760 NR_002768 ENSG00000283122 HYMAI NCRNA00020 hydatidiform mole associated and imprinted ncRNA 212.25-15 chr15 65688904 65689264 + 1.25 NA intron (NM_005848, intron 22 of 31) L1MEg1|LINE|L1 7852 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 257.5-26 chr8 46218281 46218668 + 1.25 NA Intergenic GSAT|Satellite|centr 399169 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 186.25-49 chr7 44387973 44388151 + 1.25 NA intron (NM_015332, intron 5 of 5) intron (NM_015332, intron 5 of 5) -62431 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 191.25-10 chr10 90856635 90856824 + 1.25 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 1310 NM_000872 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 128.25-44 chr3 940780 940908 + 1.25 NA Intergenic L1PA15|LINE|L1 -152180 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 200.5-10 chr10 105859134 105859463 + 1.25 NA Intergenic Intergenic -38965 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 153.25-54 chr8 87355164 87355418 + 1.25 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 488876 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192.75-15 chr18 2386624 2386884 + 1.25 NA Intergenic L1ME1|LINE|L1 184751 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 288-12 chr2 217692828 217693102 + 1.25 NA intron (NR_026597, intron 1 of 12) L2c|LINE|L2 63628 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 175.25-13 chr11 40873872 40874092 + 1.25 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -580852 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 226.5-49 chr8 81387974 81388233 + 1.25 NA Intergenic L1ME3D|LINE|L1 59336 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 123-40 chr4 37051813 37051928 + 1.25 NA Intergenic Intergenic 50091 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 247-18 chr20 57445583 57445948 + 1.25 NA Intergenic Intergenic -52709 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 273-21 chr5 44803949 44804215 + 1.25 NA intron (NR_109863, intron 1 of 3) L1MD1|LINE|L1 4711 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 173.75-11 chr11 10115655 10116085 + 1.25 NA intron (NM_030962, intron 2 of 39) Kanga11a|DNA|TcMar-Tc2 178337 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 156.5-53 chr4 80095561 80095825 + 1.25 NA Intergenic Intergenic -22221 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 249-9 chr15 57110080 57110553 + 1.25 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -109114 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 245-17 chr3 48585666 48585941 + 1.25 NA intron (NM_000094, intron 29 of 117) intron (NM_000094, intron 29 of 117) -6826 NR_031756 100313843 NR_031756 ENSG00000284251 MIR711 hsa-mir-711 microRNA 711 ncRNA 190.75-55 chr9 136411539 136411857 + 1.25 NA intron (NM_015160, intron 1 of 12) intron (NM_015160, intron 1 of 12) 1040 NM_015160 23203 Hs.495471 NM_015160 ENSG00000165688 PMPCA Alpha-MPP|CLA1|CPD3|INPP5E|P-55|SCAR2 peptidase, mitochondrial processing alpha subunit protein-coding 155.5-46 chr18 24738745 24738908 + 1.25 NA intron (NR_134604, intron 2 of 2) intron (NR_134604, intron 2 of 2) 13045 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 157-38 chr3 19879882 19880020 + 1.25 NA intron (NM_001330688, intron 14 of 14) (GT)n|Simple_repeat|Simple_repeat 54266 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 204.25-32 chr21 33992848 33993011 + 1.25 NA Intergenic AluJb|SINE|Alu 16547 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 173.75-31 chr3 119312893 119313123 + 1.25 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) 9752 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 268.75-25 chr5 45299231 45299550 + 1.25 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 396990 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 193.25-4 chr1 214838124 214838367 + 1.25 NA Intergenic L1ME1|LINE|L1 -167297 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 165.75-45 chr4 42918983 42919174 + 1.25 NA intron (NM_001080476, intron 1 of 3) MER102b|DNA|hAT-Charlie 25812 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 212.5-9 chr12 90797983 90798222 + 1.25 NA Intergenic HAL1|LINE|L1 -119921 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 164.5-45 chr20 8225093 8225230 + 1.25 NA intron (NM_182734, intron 2 of 32) L1MC5|LINE|L1 -23543 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 209-12 chr18 27728307 27728490 + 1.25 NA Intergenic Intergenic 308243 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 258.75-12 chr14 62989906 62990290 + 1.25 NA intron (NM_139318, intron 4 of 10) intron (NM_139318, intron 4 of 10) 55360 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 173.5-19 chr14 28153841 28154038 + 1.25 NA Intergenic L1M4|LINE|L1 -480718 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 252-8 chr14 71826909 71827213 + 1.25 NA Intergenic MER63C|DNA|hAT-Blackjack -105110 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 290.25-6 chr14 66982004 66982425 + 1.25 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -207226 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 217.75-13 chr15 67318489 67318699 + 1.25 NA intron (NM_001322475, intron 3 of 17) L1M5|LINE|L1 -63396 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 150-44 chr20 56244405 56244605 + 1.25 NA Intergenic LTR16E1|LTR|ERVL -4227 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 196.25-37 chr2 192799056 192799304 + 1.25 NA Intergenic Intergenic 49335 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 176.5-10 chr11 16471665 16472002 + 1.25 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 4555 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 264-2 chr10 61415901 61416150 + 1.25 NA intron (NR_134508, intron 5 of 6) L3|LINE|CR1 -36614 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 159-10 chr11 98796434 98796677 + 1.25 NA Intergenic MER45A|DNA|hAT-Tip100 -224394 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 174-46 chr5 149079519 149079700 + 1.25 NA intron (NR_122044, intron 2 of 2) L1MA9|LINE|L1 16292 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 124-10 chr10 92900507 92900700 + 1.25 NA intron (NM_001319195, intron 5 of 21) HAL1|LINE|L1 52083 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 124.5-98 chr7 14635489 14635662 + 1.25 NA intron (NM_001350722, intron 13 of 25) intron (NM_001350722, intron 13 of 25) 205875 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 158.25-36 chr3 173018593 173018789 + 1.25 NA intron (NM_031955, intron 4 of 10) intron (NM_031955, intron 4 of 10) 122544 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 193.75-41 chr6 159172707 159172882 + 1.25 NA intron (NM_032532, intron 1 of 22) Charlie1a|DNA|hAT-Charlie -2787 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 283-2 chr1 180091264 180091646 + 1.25 NA intron (NM_014810, intron 33 of 37) intron (NM_014810, intron 33 of 37) -63378 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 183-33 chr2 156961655 156961844 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -295956 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 224.25-14 chr14 89226135 89226381 + 1.25 NA intron (NM_001085471, intron 4 of 6) AluJb|SINE|Alu 190975 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 232.5-25 chr3 42761464 42761824 + 1.25 NA intron (NM_144719, intron 1 of 15) intron (NM_144719, intron 1 of 15) -8968 NR_122070 729083 Hs.713395 NR_122070 ENSG00000225611 LINC02158 - long intergenic non-protein coding RNA 2158 ncRNA 219.25-20 chr22 36714850 36715084 + 1.25 NA intron (NR_134623, intron 1 of 3) intron (NR_134623, intron 1 of 3) 11091 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 137.75-63 chr4 139595461 139595679 + 1.25 NA Intergenic Intergenic -38801 NM_001306199 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 355.25-4 chr15 94485049 94485407 + 1.25 NA Intergenic L1MA4A|LINE|L1 129298 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 143-21 chr12 98239375 98239550 + 1.25 NA Intergenic Intergenic 217683 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 215-31 chr3 30890594 30890897 + 1.25 NA intron (NM_207359, intron 1 of 14) intron (NM_207359, intron 1 of 14) 3916 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 294-6 chr2 10417931 10418219 + 1.25 NA intron (NM_134421, intron 3 of 5) (TAGA)n|Simple_repeat|Simple_repeat 28774 NR_028374 100302743 Hs.730525 NR_028374 ENSG00000206633 SNORA80B ACA67B small nucleolar RNA, H/ACA box 80B snoRNA 346.5-8 chr9 1796314 1796674 + 1.25 NA Intergenic Intergenic -218853 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 350.5-4 chr12 88332433 88332748 + 1.25 NA Intergenic Intergenic 190283 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 178.75-17 chr16 10348364 10348542 + 1.25 NA Intergenic AluSx|SINE|Alu -37608 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 140.25-37 chr2 99807697 99807842 + 1.25 NA intron (NM_001025108, intron 7 of 23) LTR53|LTR|ERVL 297814 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 192.25-21 chr2 77981332 77981594 + 1.25 NA intron (NR_110288, intron 1 of 3) L1PA15|LINE|L1 -26437 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 167.25-50 chr3 111055882 111056092 + 1.25 NA intron (NR_045114, intron 2 of 3) intron (NR_045114, intron 2 of 3) 13972 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 405.5-7 chr8 127002683 127003117 + 1.25 NA Intergenic Intergenic -10254 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 193.75-11 chr12 13772809 13773018 + 1.25 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 207443 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 163.25-32 chr15 61481928 61482177 + 1.25 NA Intergenic Intergenic -247866 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 116-37 chr2 57498025 57498212 + 1.25 NA Intergenic Intergenic -409533 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 199-27 chr21 31898800 31899014 + 1.25 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 25887 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 297.75-19 chr7 33345360 33345688 + 1.25 NA intron (NM_198428, intron 12 of 22) intron (NM_198428, intron 12 of 22) 215960 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 237.75-33 chr3 114905235 114905501 + 1.25 NA intron (NM_001348805, intron 3 of 10) L2c|LINE|L2 -4743 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 127.75-86 chr7 8296488 8296638 + 1.25 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -33951 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 176.5-60 chr3 70739675 70739896 + 1.25 NA Intergenic Intergenic 325139 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 204.5-68 chr9 24953193 24953479 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -407439 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 163.5-11 chr1 235321252 235321526 + 1.25 NA intron (NR_135074, intron 2 of 24) intron (NR_135074, intron 2 of 24) 6098 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 212.25-17 chr17 42293859 42294100 + 1.25 NA intron (NM_001288718, intron 4 of 18) AluSx1|SINE|Alu 5923 NM_001288719 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 245.75-5 chr11 15791927 15792359 + 1.25 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 148258 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 189.75-49 chr8 138828780 138829126 + 1.25 NA intron (NM_152888, intron 5 of 64) intron (NM_152888, intron 5 of 64) 85088 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 121-35 chr2 62108685 62108863 + 1.25 NA intron (NM_001321781, intron 2 of 2) MER34A|LTR|ERV1 -87341 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 152.25-67 chr8 107738092 107738308 + 1.25 NA Intergenic Intergenic -240282 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 136.5-110 chr8 124117352 124117507 + 1.25 NA intron (NM_001039112, intron 39 of 40) L2b|LINE|L2 54093 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 192.25-24 chr20 34467041 34467205 + 1.25 NA TTS (NR_030374) TTS (NR_030374) 798 NR_030374 693229 NR_030374 ENSG00000207997 MIR644A MIR644|MIRN644|hsa-mir-644|hsa-mir-644a microRNA 644a ncRNA 157.5-92 chr7 120956793 120957016 + 1.25 NA TTS (NM_198267) TTS (NM_198267) 6127 NM_198267 54556 Hs.489811 NM_019071 ENSG00000071243 ING3 Eaf4|ING2|MEAF4|p47ING3 inhibitor of growth family member 3 protein-coding 173.5-107 chr9 36252998 36253208 + 1.25 NA intron (NM_001128227, intron 1 of 11) AluSx3|SINE|Alu 5345 NM_001190384 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 225.5-53 chr9 100417740 100417947 + 1.25 NA Intergenic Intergenic -9370 NM_080655 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 143.5-18 chr11 79652927 79653158 + 1.25 NA Intergenic Intergenic -212012 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 150.5-86 chr7 88738558 88738847 + 1.25 NA Intergenic L1M3|LINE|L1 -20998 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 283-14 chr7 4267698 4268098 + 1.25 NA 3' UTR (NM_152744, exon 45 of 45) 3' UTR (NM_152744, exon 45 of 45) -133061 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 133-30 chr18 1093302 1093497 + 1.25 NA Intergenic Intergenic -165406 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 195-23 chr16 84577427 84577670 + 1.25 NA intron (NM_021149, intron 3 of 3) intron (NM_021149, intron 3 of 3) 40530 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 129.5-29 chr14 68308035 68308140 + 1.25 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 320700 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 224.75-24 chrX 148833036 148833285 + 1.25 NA intron (NM_001170628, intron 2 of 17) intron (NM_001170628, intron 2 of 17) 114069 NM_001170628 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 196.5-65 chr6 131742411 131742649 + 1.25 NA intron (NR_133007, intron 23 of 23) intron (NR_133007, intron 23 of 23) -31513 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 119.25-51 chr2 78778589 78778732 + 1.25 NA Intergenic Intergenic 233129 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 264.75-2 chr1 184500900 184501225 + 1.25 NA intron (NM_030806, intron 2 of 5) intron (NM_030806, intron 2 of 5) 114033 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 282.25-10 chr2 172210835 172211263 + 1.25 NA Intergenic Intergenic 108043 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 124.75-44 chr2 53727668 53727880 + 1.25 NA intron (NM_001201965, intron 4 of 8) AluSz6|SINE|Alu -40009 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 143.25-41 chr20 51147304 51147497 + 1.25 NA Intergenic Tigger2a|DNA|TcMar-Tigger -124293 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 205.25-40 chr7 4386198 4386504 + 1.25 NA Intergenic Intergenic -251514 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 139.75-5 chr1 86699370 86699585 + 1.25 NA intron (NR_135837, intron 1 of 4) MLT1L|LTR|ERVL-MaLR 5016 NR_135837 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 125.5-121 chr8 52629215 52629324 + 1.25 NA intron (NM_001083617, intron 21 of 23) intron (NM_001083617, intron 21 of 23) -63839 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 125.5-130 chr9 69181528 69181661 + 1.25 NA intron (NM_001369872, intron 1 of 21) intron (NM_001369872, intron 1 of 21) 7317 NM_004817 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 199-19 chr19 29489589 29489925 + 1.25 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 35995 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 157-2 chr1 41156339 41156551 + 1.25 NA intron (NM_001031694, intron 3 of 15) AluJb|SINE|Alu 4987 NM_001031694 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 217.25-33 chr8 58601977 58602300 + 1.25 NA intron (NM_001144772, intron 13 of 30) intron (NM_001144772, intron 13 of 30) 48877 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 169-41 chr3 188402266 188402498 + 1.25 NA intron (NM_001167671, intron 2 of 10) L1MC|LINE|L1 166284 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 144-42 chr22 30834185 30834340 + 1.25 NA intron (NM_001282741, intron 1 of 12) L1MB8|LINE|L1 11746 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 120.75-44 chr2 32573385 32573594 + 1.25 NA intron (NR_125793, intron 1 of 1) AluSx|SINE|Alu 1329 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 195.75-17 chr16 5045297 5045608 + 1.25 NA intron (NM_152459, intron 7 of 7) intron (NM_152459, intron 7 of 7) -11517 NM_016256 51172 Hs.21334 NM_016256 ENSG00000103174 NAGPA APAA|UCE N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 151.75-42 chr2 70080578 70080741 + 1.25 NA intron (NR_033872, intron 4 of 10) intron (NR_033872, intron 4 of 10) 6356 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 178.25-13 chr10 74001748 74002028 + 1.25 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 3772 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 192.75-23 chr3 35966152 35966318 + 1.25 NA Intergenic Intergenic 221759 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 264.5-3 chr10 73870786 73871184 + 1.25 NA intron (NR_160045, intron 1 of 17) intron (NR_160045, intron 1 of 17) 3570 NM_001367529 818 Hs.523045 NM_001222 ENSG00000148660 CAMK2G CAMK|CAMK-II|CAMKG calcium/calmodulin dependent protein kinase II gamma protein-coding 150.25-47 chr3 30316381 30316543 + 1.25 NA Intergenic Intergenic -202406 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 219.75-8 chr12 42381232 42381524 + 1.25 NA intron (NM_001364830, intron 4 of 6) intron (NM_001364830, intron 4 of 6) 49580 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 152-49 chr4 137855875 137856068 + 1.25 NA Intergenic Intergenic -233043 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 120.25-55 chr4 105613273 105613415 + 1.25 NA intron (NM_001242729, intron 2 of 13) intron (NM_001242729, intron 2 of 13) 51753 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 293.25-3 chr11 40722812 40723304 + 1.25 NA intron (NM_020929, intron 1 of 4) L1PA17|LINE|L1 -429928 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 235.25-21 chr5 23817789 23817984 + 1.25 NA Intergenic Intergenic -133462 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 114.5-4 chr1 187676503 187676650 + 1.25 NA Intergenic L1MEc|LINE|L1 232948 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 215.5-52 chrX 70156953 70157181 + 1.25 NA intron (NM_001370194, intron 3 of 3) L1MA8|LINE|L1 -20416 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 276-5 chr14 95606527 95606949 + 1.25 NA Intergenic MIRb|SINE|MIR 33176 NR_146449 100506999 Hs.112858 NR_146449 ENSG00000258390 LINC02318 - long intergenic non-protein coding RNA 2318 ncRNA 178.5-20 chr15 97796958 97797146 + 1.25 NA intron (NR_024172, intron 1 of 2) MIRb|SINE|MIR 77377 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 241.75-11 chr17 82117367 82117621 + 1.25 NA intron (NM_001367828, intron 16 of 16) AluJb|SINE|Alu -19258 NM_004104 2194 Hs.83190 NM_004104 ENSG00000169710 FASN FAS|OA-519|SDR27X1 fatty acid synthase protein-coding 139.25-54 chr21 29164495 29164685 + 1.25 NA intron (NM_001286620, intron 4 of 4) LFSINE_Vert|SINE|tRNA 19013 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 320.5-14 chr4 82110409 82111013 + 1.25 NA Intergenic Intergenic 263280 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 167.5-74 chr6 108784606 108784781 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 33039 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 173-3 chr1 164786500 164786659 + 1.25 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) -11938 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 286-5 chr10 43927702 43928066 + 1.25 NA intron (NR_033846, intron 2 of 7) MER34A|LTR|ERV1 15482 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 142.25-47 chr3 195241245 195241412 + 1.25 NA intron (NM_152531, intron 1 of 3) intron (NM_152531, intron 1 of 3) 6592 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 218.5-26 chr2 213763978 213764237 + 1.25 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 6040 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 171.5-34 chr17 76843822 76844059 + 1.25 NA Intergenic Intergenic -12226 NR_135283 283994 Hs.645372 NR_135283 ENSG00000267535 LINC00868 C17orf52 long intergenic non-protein coding RNA 868 ncRNA 185-11 chr13 44945821 44946072 + 1.25 NA intron (NM_012345, intron 8 of 9) MIR|SINE|MIR 43525 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 196.25-17 chr14 70418031 70418209 + 1.25 NA Intergenic MER102c|DNA|hAT-Charlie -1030 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 227.25-27 chr4 44252672 44252882 + 1.25 NA intron (NM_198353, intron 1 of 1) L1MEd|LINE|L1 196032 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 225.25-22 chr3 57404918 57405130 + 1.25 NA exon (NM_001366028, exon 42 of 74) exon (NM_001366028, exon 42 of 74) -112339 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 156.75-59 chr21 14670608 14670886 + 1.25 NA Intergenic Intergenic -27640 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 180.5-82 chr7 26794924 26795132 + 1.25 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 62695 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 141.25-23 chr12 65674865 65674998 + 1.25 NA Intergenic Intergenic -32559 NR_120432 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 199.75-34 chr5 38033354 38033541 + 1.25 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 7750 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 142-28 chr2 46934400 46934612 + 1.25 NA intron (NM_001288953, intron 2 of 20) AluSz6|SINE|Alu -6718 NM_001288951 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 220.25-3 chr1 112269357 112269870 + 1.25 NA Intergenic Intergenic -126601 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 204.25-16 chr14 75196592 75196818 + 1.25 NA Intergenic Intergenic -20093 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 176.75-14 chr14 89982992 89983150 + 1.25 NA intron (NM_001008744, intron 7 of 15) intron (NM_001008744, intron 7 of 15) 27144 NM_001008744 55775 Hs.209945 NM_018319 ENSG00000042088 TDP1 - tyrosyl-DNA phosphodiesterase 1 protein-coding 278.25-17 chr4 34106128 34106380 + 1.25 NA Intergenic L2|LINE|L2 -66361 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 119-75 chr8 126952339 126952441 + 1.25 NA Intergenic Intergenic -60764 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 291.5-17 chr8 11373713 11374185 + 1.25 NA intron (NR_026814, intron 1 of 6) L1PA13|LINE|L1 5547 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 296.25-8 chr3 186461062 186461487 + 1.25 NA intron (NR_033844, intron 3 of 7) Arthur1|DNA|hAT-Tip100 20929 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 278.25-4 chr1 217169564 217169882 + 1.25 NA Intergenic AluY|SINE|Alu -32021 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 233.25-32 chr6 162142764 162143138 + 1.25 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -584181 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 460.25 chr22 19308191 19308878 + 1.25 NA Intergenic AluY|SINE|Alu -16815 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 203.25-13 chr11 104585740 104585988 + 1.25 NA intron (NR_120585, intron 1 of 3) intron (NR_120585, intron 1 of 3) 23438 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 172.25-57 chr4 77381961 77382223 + 1.25 NA Intergenic Intergenic -129661 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 329.75-6 chr22 33797032 33797295 + 1.25 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 72177 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 132.5-69 chr22 25185982 25186098 + 1.25 NA intron (NM_001145206, intron 9 of 10) MER58A|DNA|hAT-Charlie -13818 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 270.5-4 chr10 63099392 63099784 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 -33659 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 163-46 chr6 56265063 56265262 + 1.25 NA intron (NM_001318752, intron 1 of 28) LTR78B|LTR|ERV1 -17582 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 239.75 chr1 9822180 9822513 + 1.25 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 2180 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 185.5-65 chr6 124183667 124183956 + 1.25 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -99194 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 261.75-17 chr2 219921596 219921854 + 1.25 NA Intergenic Intergenic -15160 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 208.25-26 chr4 58983496 58983757 + 1.25 NA promoter-TSS (NR_133941) promoter-TSS (NR_133941) -656 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 201.75-9 chr14 20051062 20051332 + 1.25 NA Intergenic Charlie7|DNA|hAT-Charlie -8848 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 265.25-5 chr10 69845769 69846016 + 1.25 NA intron (NM_001368898, intron 3 of 33) MER5A|DNA|hAT-Charlie 43986 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 258.75-20 chr3 172647410 172647631 + 1.25 NA intron (NM_001146278, intron 1 of 3) intron (NM_001146278, intron 1 of 3) -51913 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 151-55 chr5 51145902 51146052 + 1.25 NA Intergenic Intergenic -175790 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 243.5-22 chr5 83074361 83074656 + 1.25 NA intron (NM_174909, intron 1 of 3) MIRb|SINE|MIR 2886 NM_174909 153339 Hs.355606 NM_174909 ENSG00000174695 TMEM167A TMEM167 transmembrane protein 167A protein-coding 150.5-63 chr3 191017356 191017587 + 1.25 NA Intergenic L1MA7|LINE|L1 139541 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 137-19 chr12 126787757 126787879 + 1.25 NA Intergenic Intergenic -15556 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 136.75-97 chr7 87189247 87189545 + 1.25 NA intron (NR_024550, intron 13 of 17) intron (NR_024550, intron 13 of 17) 30336 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 164-46 chr5 66069387 66069633 + 1.25 NA intron (NM_001253699, intron 22 of 25) intron (NM_001253699, intron 22 of 25) -74790 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 241-28 chr4 134054762 134055039 + 1.25 NA Intergenic L1MD1|LINE|L1 146889 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 130.5-63 chr3 132084502 132084727 + 1.25 NA Intergenic L1ME3B|LINE|L1 -45008 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 232-30 chr9 129268596 129268828 + 1.25 NA Intergenic L1ME4a|LINE|L1 -13704 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 198.5-25 chr2 81880230 81880452 + 1.25 NA Intergenic Intergenic -413395 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 140.75-35 chr2 181424190 181424355 + 1.25 NA Intergenic Intergenic -32620 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 142.25-53 chr5 61604041 61604273 + 1.25 NA Intergenic Intergenic -33603 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 216.25 chr1 55471986 55472246 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 246475 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 214.5-12 chr12 90592964 90593179 + 1.25 NA Intergenic Intergenic 299753 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 112.75-73 chr6 12235462 12235736 + 1.25 NA Intergenic Intergenic -54762 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 194-41 chr8 111054664 111054846 + 1.25 NA Intergenic L1MB5|LINE|L1 -27322 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 235.75-14 chr2 164516758 164517010 + 1.25 NA intron (NM_004490, intron 6 of 13) AluSz|SINE|Alu 51611 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 180.25-37 chr22 32909825 32909997 + 1.25 NA intron (NM_003490, intron 4 of 13) intron (NM_003490, intron 4 of 13) 96910 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 310.25-7 chr7 30717622 30718072 + 1.25 NA Intergenic MIR|SINE|MIR -17744 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 115-31 chr16 61950157 61950380 + 1.25 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 86170 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 180.5-97 chrX 34824603 34825037 + 1.25 NA Intergenic L1PB|LINE|L1 -117976 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 178-28 chr2 229075138 229075331 + 1.25 NA intron (NM_001330157, intron 1 of 1) MER47A|DNA|TcMar-Tigger 156858 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 151-47 chr4 70664679 70664822 + 1.25 NA intron (NM_144646, intron 1 of 3) intron (NM_144646, intron 1 of 3) 1758 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 115-79 chr9 111574917 111575097 + 1.25 NA intron (NM_001146109, intron 7 of 9) intron (NM_001146109, intron 7 of 9) 24424 NM_012212 22949 Hs.584864 NM_012212 ENSG00000106853 PTGR1 LTB4DH|PGR1|ZADH3 prostaglandin reductase 1 protein-coding 143.75-49 chr2 142371261 142371467 + 1.25 NA Intergenic Intergenic -239663 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 158.5-46 chr18 7849993 7850362 + 1.25 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 282861 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 128.5-73 chr5 34541337 34541441 + 1.25 NA Intergenic Intergenic -114939 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 156.25-64 chr6 16925742 16926090 + 1.25 NA Intergenic Intergenic -164426 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 143.5-85 chr5 143920781 143920979 + 1.25 NA Intergenic Intergenic 108719 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 177-23 chr19 40058746 40058913 + 1.25 NA Intergenic L1MEc|LINE|L1 -2598 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 161.5-40 chr17 57822985 57823156 + 1.25 NA Intergenic Intergenic 26974 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 274.5-25 chr5 3858797 3859031 + 1.25 NA Intergenic Intergenic 263082 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 241-3 chr1 154587829 154588096 + 1.25 NA intron (NM_001111, intron 11 of 14) L2c|LINE|L2 18291 NM_001193495 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 230.5-34 chr3 115708081 115708280 + 1.25 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 84670 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 176-12 chr11 94890301 94890568 + 1.25 NA Intergenic L1MA5|LINE|L1 83122 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 201.25-35 chr5 106022559 106022933 + 1.25 NA Intergenic Intergenic 923272 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 233.5-8 chr11 44846886 44847181 + 1.25 NA intron (NM_130783, intron 2 of 9) intron (NM_130783, intron 2 of 9) 103127 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 199.5-30 chr2 190857144 190857339 + 1.25 NA Intergenic L2a|LINE|L2 -23580 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 192.75-11 chr15 41169502 41169832 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -53387 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 236.75-17 chr3 119730725 119731026 + 1.25 NA intron (NM_033364, intron 8 of 17) MER106B|DNA|hAT-Charlie 27853 NM_001320318 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 119.5-4 chr1 58425602 58425823 + 1.25 NA Intergenic Intergenic 121014 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 207.25-17 chr3 47140731 47140966 + 1.25 NA intron (NR_146158, intron 1 of 21) AluSx1|SINE|Alu 23129 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 201.25-10 chr14 64507748 64508146 + 1.25 NA intron (NM_001123329, intron 1 of 1) intron (NM_001123329, intron 1 of 1) -2734 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 222.5-15 chr14 69768602 69769079 + 1.25 NA exon (NM_006925, exon 4 of 8) exon (NM_006925, exon 4 of 8) -1127 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 133.5-96 chr5 178611432 178611572 + 1.25 NA intron (NM_020666, intron 9 of 12) MER3|DNA|hAT-Charlie 15548 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 153.75-15 chr11 84357848 84358031 + 1.25 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -40600 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 166.75-31 chr2 96371182 96371335 + 1.25 NA intron (NM_001281712, intron 16 of 16) intron (NM_001281712, intron 16 of 16) 35492 NM_001281712 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 209.75-33 chr5 114624496 114624710 + 1.25 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 48562 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 214.25-41 chr6 159228619 159229068 + 1.25 NA intron (NM_032532, intron 9 of 22) AluSz|SINE|Alu -58836 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 374-6 chr4 55611337 55611684 + 1.25 NA intron (NM_001292045, intron 2 of 8) Tigger3|DNA|TcMar-Tigger -19265 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 113-36 chr17 71234179 71234286 + 1.25 NA Intergenic Intergenic -32053 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 154.25-57 chr6 74272023 74272157 + 1.25 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 202639 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 262.25-21 chr8 9699346 9699764 + 1.25 NA intron (NM_003747, intron 5 of 26) intron (NM_003747, intron 5 of 26) -42117 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 369.25 chr14 83672011 83672486 + 1.25 NA Intergenic Intergenic 1029616 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 256.25-4 chr13 41899595 41900012 + 1.25 NA intron (NM_001009814, intron 4 of 25) intron (NM_001009814, intron 4 of 25) 61282 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 115.75-69 chr4 39202314 39202524 + 1.25 NA intron (NM_025132, intron 6 of 36) L1MC|LINE|L1 19890 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 153-36 chr4 41976302 41976463 + 1.25 NA Intergenic Intergenic -5374 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 161.25-2 chr1 54075698 54075847 + 1.25 NA intron (NM_153035, intron 3 of 4) AluSz|SINE|Alu 21693 NR_039942 100616315 NR_039942 ENSG00000283749 MIR4781 mir-4781 microRNA 4781 ncRNA 154.25-64 chr8 102746673 102746941 + 1.25 NA Intergenic Intergenic -60015 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 247.5-35 chr7 30869116 30869416 + 1.25 NA intron (NR_037598, intron 15 of 19) intron (NR_037598, intron 15 of 19) -42428 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 237.75-34 chr3 118711432 118711642 + 1.25 NA intron (NR_135547, intron 1 of 3) L1MC4a|LINE|L1 69769 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 148-41 chr22 26250174 26250404 + 1.25 NA intron (NM_001184776, intron 1 of 14) L1MA5|LINE|L1 80815 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 166.5-74 chr4 105335047 105335195 + 1.25 NA intron (NR_126420, intron 1 of 5) intron (NR_126420, intron 1 of 5) 17760 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 151.25-13 chr12 21309647 21309806 + 1.25 NA intron (NM_021094, intron 3 of 13) HAL1|LINE|L1 25191 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 185.5-46 chr22 27788885 27789041 + 1.25 NA intron (NM_002430, intron 1 of 1) intron (NM_002430, intron 1 of 1) 12793 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 141-30 chr17 71237454 71237697 + 1.25 NA Intergenic Intergenic -35396 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 123-26 chr17 9123893 9124053 + 1.25 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 55145 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 338.5-8 chr4 163766305 163766771 + 1.25 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -153004 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 166.75-4 chr10 10189733 10189995 + 1.25 NA Intergenic AluJr|SINE|Alu 131142 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 235.75-2 chr1 63451234 63451642 + 1.25 NA intron (NM_001347147, intron 7 of 7) intron (NM_001347147, intron 7 of 7) 71835 NM_001347147 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 171.5-27 chr14 70070721 70070893 + 1.25 NA intron (NM_033262, intron 2 of 7) MER63A|DNA|hAT-Blackjack 9410 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 188-49 chr9 32283726 32283894 + 1.25 NA Intergenic Intergenic -100793 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 176.25-60 chr6 47736598 47736763 + 1.25 NA Intergenic Intergenic 38100 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 205.5-67 chrX 99898433 99898770 + 1.25 NA Intergenic Intergenic 511672 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 123.25-78 chr9 11581387 11581623 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 968299 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 119.75-34 chr16 54659398 54659524 + 1.25 NA Intergenic Intergenic 188772 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 140.75-6 chr1 228276993 228277181 + 1.25 NA intron (NM_052843, intron 23 of 80) intron (NM_052843, intron 23 of 80) -63423 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 132.25-84 chr7 50629355 50629475 + 1.25 NA intron (NM_001350816, intron 6 of 17) intron (NM_001350816, intron 6 of 17) -64010 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 176.25-73 chr9 95234196 95234439 + 1.25 NA intron (NM_001243744, intron 4 of 13) L2a|LINE|L2 82937 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 153.5-65 chr3 79870618 79870827 + 1.25 NA Intergenic Intergenic -102724 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 208.5-76 chr9 91291966 91292159 + 1.25 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 69862 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 203.75-31 chr4 113592574 113592877 + 1.25 NA intron (NM_001221, intron 4 of 18) intron (NM_001221, intron 4 of 18) 169013 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 183.5-72 chr6 85251548 85251811 + 1.25 NA Intergenic Intergenic 138507 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 309.5-8 chr19 32323822 32324188 + 1.25 NA Intergenic Intergenic -21605 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 135-84 chrX 111366565 111366683 + 1.25 NA intron (NM_178152, intron 3 of 6) intron (NM_178152, intron 3 of 6) 44522 NM_000555 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 345.25-5 chr4 124758607 124759131 + 1.25 NA Intergenic Intergenic -46137 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 227.5-15 chr12 89717703 89717946 + 1.25 NA Intergenic Intergenic -8458 NM_001366524 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 167-8 chr12 8074259 8074490 + 1.25 NA Intergenic Intergenic -7837 NR_024260 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 271.25-14 chr8 133393643 133393878 + 1.25 NA Intergenic Intergenic -96456 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 155.5 chr1 22433786 22433993 + 1.25 NA Intergenic L1ME4b|LINE|L1 -17962 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 142-39 chr21 31433373 31433632 + 1.25 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -89148 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 121.5-2 chr1 20014143 20014333 + 1.25 NA Intergenic MLT1A1|LTR|ERVL-MaLR -33804 NM_000300 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 203.5-4 chr1 102472336 102472753 + 1.25 NA Intergenic Intergenic -475310 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 307.75 chr1 77459836 77460179 + 1.25 NA intron (NM_012093, intron 8 of 13) intron (NM_012093, intron 8 of 13) 176920 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 300-20 chr7 16058320 16058703 + 1.25 NA Intergenic HAL1ME|LINE|L1 -151975 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 180-40 chr2 167146580 167146964 + 1.25 NA intron (NM_152381, intron 3 of 10) L1MEd|LINE|L1 -5817 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 206-8 chr12 25040546 25040845 + 1.25 NA intron (NM_001321724, intron 17 of 17) intron (NM_001321724, intron 17 of 17) -11533 NR_159366 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 187-5 chr12 22569912 22570089 + 1.25 NA Intergenic L1M6|LINE|L1 -25454 NM_001286173 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 138-82 chr8 131691955 131692094 + 1.25 NA Intergenic Intergenic -212069 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 182.25-5 chr10 65946115 65946328 + 1.25 NA intron (NM_001127384, intron 17 of 17) MIRb|SINE|MIR 374796 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 206.5-38 chr3 120001558 120001835 + 1.25 NA intron (NM_002093, intron 2 of 11) intron (NM_002093, intron 2 of 11) 82952 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 170.5-41 chr2 168238957 168239195 + 1.25 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 8519 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 196.75-28 chr4 46340986 46341276 + 1.25 NA intron (NM_001114175, intron 2 of 8) L1M4|LINE|L1 48248 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 258-13 chr14 51672462 51672913 + 1.25 NA intron (NM_001267046, intron 1 of 13) HSMAR2|DNA|TcMar-Mariner 20777 NM_152330 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 130.25-94 chrX 47825299 47825428 + 1.25 NA Intergenic L1MCa|LINE|L1 -11539 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 193.25-26 chr3 64724184 64724389 + 1.25 NA intron (NR_038264, intron 1 of 5) L2a|LINE|L2 -36286 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 250.5-19 chr20 1768087 1768477 + 1.25 NA Intergenic Intergenic 11464 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 187.25-39 chr3 78637343 78637523 + 1.25 NA intron (NM_002941, intron 22 of 30) MER3|DNA|hAT-Charlie 382026 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 210-21 chr22 50095229 50095569 + 1.25 NA intron (NM_018995, intron 2 of 26) intron (NM_018995, intron 2 of 26) 5143 NM_001164105 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 225-42 chr8 121793303 121793543 + 1.25 NA Intergenic L1MD2|LINE|L1 -151983 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 224-5 chr11 81140214 81140402 + 1.25 NA Intergenic Intergenic -377505 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 294.25-4 chr14 69063400 69063818 + 1.25 NA intron (NM_003861, intron 7 of 8) intron (NM_003861, intron 7 of 8) 83927 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 310-23 chr7 135963907 135964228 + 1.25 NA intron (NM_001128619, intron 1 of 3) intron (NM_001128619, intron 1 of 3) 13292 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 293.5-12 chr2 65371064 65371485 + 1.25 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -4496 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 142-7 chr10 67934702 67934857 + 1.25 NA intron (NM_001278185, intron 21 of 23) HAL1|LINE|L1 43377 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 150.75-22 chr17 63149733 63149939 + 1.25 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 183601 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 158.5-43 chr17 27515138 27515425 + 1.25 NA intron (NM_014238, intron 2 of 20) Tigger3a|DNA|TcMar-Tigger 43317 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 190.5-27 chr15 57908018 57908175 + 1.25 NA Intergenic Intergenic 105927 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 140-26 chr17 60074027 60074286 + 1.25 NA intron (NM_022070, intron 2 of 19) intron (NM_022070, intron 2 of 19) 4775 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 308-6 chr21 32102901 32103188 + 1.25 NA Intergenic L1M5|LINE|L1 -16749 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 225.5-32 chr3 24537956 24538294 + 1.25 NA Intergenic Intergenic -42417 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 117.25-14 chr10 63971931 63972115 + 1.25 NA Intergenic L1MDa|LINE|L1 -450133 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 240.5-6 chr1 194832493 194832790 + 1.25 NA Intergenic Intergenic 1256074 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 181.5-56 chr5 149191034 149191400 + 1.25 NA intron (NM_001370418, intron 2 of 18) L1MC5|LINE|L1 49486 NM_001301028 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 190.5-36 chr2 125012579 125012773 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL 987389 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 163.75-24 chr16 4200298 4200686 + 1.25 NA intron (NM_001098814, intron 3 of 5) intron (NM_001098814, intron 3 of 5) 41588 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 127-67 chr4 8093725 8093877 + 1.25 NA intron (NM_001130084, intron 3 of 19) L1MEf|LINE|L1 -21813 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 167.5-57 chr3 183706706 183707079 + 1.25 NA intron (NM_001351371, intron 1 of 21) Tigger4b|DNA|TcMar-Tigger -3347 NM_001351369 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 116.25-35 chr17 58844569 58844707 + 1.25 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 88769 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 239.5-34 chr9 72804773 72805049 + 1.25 NA intron (NM_138691, intron 17 of 23) L1ME4b|LINE|L1 69198 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 218.75-34 chr6 42423976 42424319 + 1.25 NA intron (NM_001297573, intron 2 of 17) L1ME3F|LINE|L1 27904 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 134-50 chr3 60894860 60895005 + 1.25 NA intron (NR_148922, intron 3 of 3) L1MC4|LINE|L1 -277062 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 134.5-19 chr11 106506643 106506813 + 1.25 NA Intergenic Intergenic 255321 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 142.25-19 chr13 82874167 82874280 + 1.25 NA Intergenic L1PA15|LINE|L1 1008170 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 215.25-2 chr1 97784853 97785115 + 1.25 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) -11937 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 163.25-27 chr14 68498527 68498794 + 1.25 NA TTS (NM_002877) TTS (NM_002877) 130127 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 284.25-15 chr3 50368695 50369063 + 1.25 NA TTS (NR_111914) TTS (NR_111914) 3516 NR_111914 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 198.25-35 chr5 14909713 14909984 + 1.25 NA Intergenic Intergenic -38070 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 269.5-29 chr8 91420295 91420633 + 1.25 NA Intergenic L2a|LINE|L2 171145 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 138-34 chr2 61138224 61138403 + 1.25 NA TTS (NM_001330433) TTS (NM_001330433) 6662 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 192.25-32 chr5 125749900 125750144 + 1.25 NA Intergenic Intergenic 256761 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 176.5-16 chr11 102726243 102726631 + 1.25 NA Intergenic Intergenic -1483 NM_002424 4317 Hs.161839 NM_002424 ENSG00000118113 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 protein-coding 121.5-26 chr12 105929153 105929255 + 1.25 NA Intergenic Intergenic 210829 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 268.5-3 chr1 117097283 117097592 + 1.25 NA intron (NM_003594, intron 21 of 22) intron (NM_003594, intron 21 of 22) 2794 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 201.75-29 chr4 86612175 86612456 + 1.25 NA intron (NM_080685, intron 1 of 47) L1MEc|LINE|L1 18000 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 173.5-86 chr5 91454566 91454782 + 1.25 NA Intergenic Intergenic -71357 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 143.5-99 chr8 80161988 80162189 + 1.25 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 9033 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 155-30 chr2 220165414 220165669 + 1.25 NA Intergenic Intergenic -258976 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 124-22 chr16 83714405 83714526 + 1.25 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 89511 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 117.75-61 chr4 60129789 60129984 + 1.25 NA Intergenic Intergenic -792733 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 169.75-48 chr5 14304778 14304962 + 1.25 NA intron (NM_007118, intron 8 of 56) intron (NM_007118, intron 8 of 56) -159113 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 288.75-7 chr18 29365981 29366267 + 1.25 NA Intergenic MamRTE1|LINE|RTE-BovB -932786 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 236.75-8 chr15 60184354 60184694 + 1.25 NA Intergenic LTR16C|LTR|ERVL 180213 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 348.25-7 chr3 140818775 140819151 + 1.25 NA Intergenic L1ME1|LINE|L1 -122873 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 143.25-59 chr5 61782592 61782759 + 1.25 NA Intergenic Intergenic -46977 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 217.25-15 chr17 64418206 64418459 + 1.25 NA Intergenic Intergenic -27472 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 286-24 chr8 67684038 67684480 + 1.25 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 62101 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 162.5-92 chr8 86849105 86849302 + 1.25 NA Intergenic AluJo|SINE|Alu -17212 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 176.25-45 chr3 80756518 80756688 + 1.25 NA Intergenic Intergenic -8294 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 194.75-38 chr5 128727417 128727627 + 1.25 NA Intergenic Intergenic -189277 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 148.25-26 chr16 70349086 70349252 + 1.25 NA intron (NM_018332, intron 1 of 11) MER68|LTR|ERVL 2266 NM_018332 55308 Hs.656037 NM_018332 ENSG00000168872 DDX19A DDX19-DDX19L|DDX19L DEAD-box helicase 19A protein-coding 154.5-49 chr21 30553906 30554072 + 1.25 NA Intergenic L1MC3|LINE|L1 7324 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 173.75-27 chr3 53015070 53015241 + 1.25 NA intron (NM_016329, intron 1 of 20) AluJb|SINE|Alu 30918 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 155.5-83 chr6 7507632 7507789 + 1.25 NA Intergenic L1MB3|LINE|L1 -33961 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 192.25-11 chr10 95946109 95946400 + 1.25 NA intron (NM_001349008, intron 9 of 34) L3|LINE|CR1 38289 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 261.75-16 chr2 173891624 173891929 + 1.25 NA Intergenic L2b|LINE|L2 72104 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 210.75-17 chr2 101518404 101518796 + 1.25 NA Intergenic Intergenic -43488 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 160.25-63 chrX 41991327 41991479 + 1.25 NA Intergenic L1MA4|LINE|L1 -67849 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 144-24 chr14 43050877 43051077 + 1.25 NA Intergenic L2a|LINE|L2 1444121 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 131.25-34 chr14 84110222 84110364 + 1.25 NA Intergenic Intergenic -1161639 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 170.25-7 chr10 94219015 94219295 + 1.25 NA intron (NM_001165979, intron 3 of 31) L2a|LINE|L2 67915 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 114.25-20 chr11 68697034 68697169 + 1.25 NA Intergenic L1MD2|LINE|L1 12557 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 114.25-81 chr5 7913972 7914180 + 1.25 NA Intergenic Intergenic 44928 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 159.25-8 chr10 101762451 101762727 + 1.25 NA Intergenic Intergenic 13525 NM_006119 2253 Hs.57710 NM_006119 ENSG00000107831 FGF8 AIGF|FGF-8|HBGF-8|HH6|KAL6 fibroblast growth factor 8 protein-coding 191.25-47 chr4 31863745 31863912 + 1.25 NA Intergenic L1PA15-16|LINE|L1 -133551 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 211.5-14 chr13 64602683 64603047 + 1.25 NA Intergenic Intergenic -526854 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 148-55 chr5 156964478 156964661 + 1.25 NA Intergenic Intergenic -1343 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 198-16 chr14 81639432 81639634 + 1.25 NA Intergenic LTR16E1|LTR|ERVL -16472 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 191.5-4 chr1 72301404 72301645 + 1.25 NA Intergenic Intergenic -18985 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 122-43 chr21 26332010 26332226 + 1.25 NA Intergenic Intergenic -61517 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 187.5-70 chr6 152639189 152639416 + 1.25 NA Intergenic L2b|LINE|L2 -1940 NM_182961 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 180-26 chr16 76380382 76380586 + 1.25 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 70632 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 173.25-42 chr3 44151703 44151942 + 1.25 NA Intergenic L1ME1|LINE|L1 37610 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 177.75-43 chr5 55788976 55789362 + 1.25 NA intron (NM_024415, intron 15 of 21) intron (NM_024415, intron 15 of 21) 22284 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 178.75-27 chr2 83761900 83762190 + 1.25 NA Intergenic Intergenic 239231 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 126.75-72 chr5 4846200 4846344 + 1.25 NA Intergenic Charlie7|DNA|hAT-Charlie 72791 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 454.75-2 chr17 10827716 10828298 + 1.25 NA intron (NM_001101387, intron 1 of 1) intron (NM_001101387, intron 1 of 1) 10080 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 182.75-60 chr8 135131303 135131569 + 1.25 NA Intergenic Intergenic -102695 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 200.75-36 chr6 93009372 93009699 + 1.25 NA Intergenic Intergenic 410024 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 221-38 chr5 72569709 72570058 + 1.25 NA non-coding (NR_105008, exon 2 of 4) non-coding (NR_105008, exon 2 of 4) 12806 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 270-32 chr9 28122674 28123001 + 1.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -548971 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 227.75-8 chr2 31882212 31882580 + 1.25 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -78416 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 183.5-77 chr8 127128148 127128399 + 1.25 NA Intergenic Intergenic -46052 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 274.5-11 chr17 47787600 47787962 + 1.25 NA Intergenic AluJb|SINE|Alu 34013 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 143.25-65 chr5 164350688 164350898 + 1.25 NA Intergenic Intergenic 116609 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 154.25-19 chr11 110095961 110096239 + 1.25 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 2708 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 165.25-56 chr8 114783622 114783856 + 1.25 NA Intergenic MLT1E3|LTR|ERVL-MaLR 884274 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 207.75-46 chrX 49215616 49215903 + 1.25 NA intron (NM_001256790, intron 27 of 47) intron (NM_001256790, intron 27 of 47) -15557 NM_003179 6855 Hs.632804 NM_003179 ENSG00000102003 SYP MRX96|MRXSYP synaptophysin protein-coding 242-4 chr1 197380232 197380613 + 1.25 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 112170 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 346.5-4 chr14 71634608 71635021 + 1.25 NA intron (NM_001354286, intron 8 of 24) AluY|SINE|Alu 48516 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 178-53 chr8 127943824 127944012 + 1.25 NA intron (NR_003367, intron 3 of 8) intron (NR_003367, intron 3 of 8) 4805 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 135-34 chr18 40754822 40754976 + 1.25 NA Intergenic Intergenic 688613 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 156.25-54 chr4 4935148 4935524 + 1.25 NA intron (NR_125893, intron 2 of 2) L2b|LINE|L2 14528 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 199.5-19 chr16 19506525 19506698 + 1.25 NA intron (NM_001324067, intron 3 of 4) AluSx|SINE|Alu 15487 NM_001324067 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 179.25-44 chr7 11248164 11248370 + 1.25 NA Intergenic Intergenic 274395 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 177.75-67 chr9 78526710 78527146 + 1.25 NA Intergenic AluSx1|SINE|Alu 229803 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 195.5 chr1 25443571 25443907 + 1.25 NA intron (NM_018202, intron 1 of 10) intron (NM_018202, intron 1 of 10) 12842 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 141-28 chr17 31172477 31172589 + 1.25 NA intron (NM_001042492, intron 5 of 57) MIRb|SINE|MIR 77556 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 124-70 chr7 21090039 21090185 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 254681 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 156.5-89 chr8 125035557 125035770 + 1.25 NA intron (NM_014846, intron 26 of 28) intron (NM_014846, intron 26 of 28) 37158 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 292.75-7 chr2 205580565 205580978 + 1.25 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -101729 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 239.5-7 chr13 98083005 98083268 + 1.25 NA Intergenic Intergenic -59453 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 201.75-8 chr12 45325423 45325650 + 1.25 NA intron (NM_001025356, intron 2 of 19) intron (NM_001025356, intron 2 of 19) 32846 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 175.5-24 chr14 38377516 38377762 + 1.25 NA Intergenic MER77B|LTR|ERVL -121546 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 151.25-3 chr1 198766375 198766545 + 1.25 NA Intergenic L1ME4b|LINE|L1 92522 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 180.25-72 chr9 110754075 110754245 + 1.25 NA intron (NM_001166281, intron 7 of 11) intron (NM_001166281, intron 7 of 11) 25898 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 201.25-27 chr3 186603287 186603741 + 1.25 NA Intergenic MIR|SINE|MIR -9546 NM_001354571 197 Hs.324746 NM_001622 ENSG00000145192 AHSG A2HS|AHS|APMR1|FETUA|HSGA alpha 2-HS glycoprotein protein-coding 246.5-22 chr7 79277104 79277545 + 1.25 NA intron (NM_001301128, intron 1 of 20) Tigger1|DNA|TcMar-Tigger -175633 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 119.75-38 chr17 58858252 58858413 + 1.25 NA intron (NM_014906, intron 1 of 6) L1MA5A|LINE|L1 102463 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 134-10 chr1 205540185 205540305 + 1.25 NA Intergenic Intergenic -28769 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 226-15 chr2 104235771 104236205 + 1.25 NA Intergenic CR1_Mam|LINE|CR1 172344 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 278.5-21 chr3 9186197 9186515 + 1.25 NA intron (NM_014850, intron 1 of 21) L2c|LINE|L2 -6137 NR_121663 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 245.25-20 chr3 10473709 10473989 + 1.25 NA intron (NM_001353564, intron 2 of 20) L2b|LINE|L2 31735 NM_001363862 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 196.5-67 chr6 143061799 143061986 + 1.25 NA TTS (NM_001366363) TTS (NM_001366363) 1003 NM_016108 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 117.25-8 chr1 188886065 188886168 + 1.25 NA Intergenic Intergenic 1442488 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 227.25-30 chr5 30824841 30825158 + 1.25 NA Intergenic L1PA16|LINE|L1 -368687 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 322.5-19 chr4 109246074 109246385 + 1.25 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 56429 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 119.25-55 chr2 164405078 164405334 + 1.25 NA Intergenic L1MC3|LINE|L1 163289 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 256.75-11 chr7 21841852 21842146 + 1.25 NA intron (NM_001277115, intron 65 of 81) MER6|DNA|TcMar-Tigger 103900 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 170.25-50 chr4 89588977 89589159 + 1.25 NA Intergenic Intergenic -247333 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 198.75-23 chr2 89831879 89832086 + 1.25 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -194075 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 163.25-53 chr5 24821285 24821500 + 1.25 NA Intergenic L1PA16|LINE|L1 19191 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 241.5-30 chr5 14986619 14986862 + 1.25 NA Intergenic Intergenic -114962 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 178.25-34 chr3 61360871 61361185 + 1.25 NA Intergenic Intergenic -109567 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 147.75-49 chr3 102297722 102297856 + 1.25 NA Intergenic Intergenic 134084 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 145-20 chr15 40576042 40576245 + 1.25 NA Intergenic L1M4|LINE|L1 6844 NM_152260 27079 Hs.173311 NM_152260 ENSG00000166133 RPUSD2 C15orf19|C18B11|PUS9 RNA pseudouridine synthase domain containing 2 protein-coding 224.25-32 chr9 108179457 108179690 + 1.25 NA Intergenic MamRep1879|DNA|hAT-Tip100? 676413 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 141.25-36 chr16 5490822 5490994 + 1.25 NA Intergenic Tigger3d|DNA|TcMar-Tigger 125342 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 150.25-34 chr2 11627563 11627790 + 1.25 NA intron (NM_014668, intron 25 of 32) intron (NM_014668, intron 25 of 32) 42519 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 173.5-64 chr3 77132095 77132288 + 1.25 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 34179 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 260.25-18 chr4 47001644 47001930 + 1.25 NA Intergenic MLT2D|LTR|ERVL -8206 NM_001204267 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 253.75-13 chr5 52393368 52393600 + 1.25 NA Intergenic Intergenic 385453 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 188.25-10 chr14 71922808 71923022 + 1.25 NA Intergenic Intergenic -9256 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 113.75-94 chr7 8263479 8263617 + 1.25 NA promoter-TSS (NM_001350835) promoter-TSS (NM_001350835) -936 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 149.5-107 chr8 91842187 91842325 + 1.25 NA Intergenic (TCA)n|Simple_repeat|Simple_repeat 175424 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 232-19 chr4 106692879 106693163 + 1.25 NA Intergenic Intergenic 259397 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 155-10 chr10 50240134 50240308 + 1.25 NA intron (NM_001143974, intron 3 of 18) intron (NM_001143974, intron 3 of 18) 8389 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 126-70 chr5 116911448 116911579 + 1.25 NA Intergenic Intergenic -149304 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 126.25-99 chr9 107994975 107995131 + 1.25 NA Intergenic Intergenic -505284 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 185.5-25 chr14 23324583 23324799 + 1.25 NA 3' UTR (NM_001360551, exon 6 of 6) 3' UTR (NM_001360551, exon 6 of 6) 2685 NM_001360552 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 267.5-11 chr17 67116167 67116515 + 1.25 NA intron (NM_001330447, intron 27 of 32) L1MEf|LINE|L1 71787 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 151.5-66 chr5 74725988 74726171 + 1.25 NA exon (NM_170691, exon 17 of 20) exon (NM_170691, exon 17 of 20) 40846 NM_000521 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 303-6 chr2 37443440 37443892 + 1.25 NA Intergenic Intergenic 99036 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 143.5-51 chr2 64033822 64034037 + 1.25 NA Intergenic Intergenic -14501 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 126.25-19 chr11 57405149 57405294 + 1.25 NA Intergenic L1MB8|LINE|L1 -14571 NM_002728 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 124.5-28 chr13 93588980 93589144 + 1.25 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 269411 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 220-3 chr1 111922391 111922588 + 1.25 NA intron (NM_172198, intron 2 of 6) MIR|SINE|MIR 12832 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 249-28 chr3 78641422 78641641 + 1.25 NA intron (NM_002941, intron 21 of 30) intron (NM_002941, intron 21 of 30) 377928 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 234.75-3 chr1 174603833 174604037 + 1.25 NA intron (NM_001366446, intron 13 of 25) L1M1|LINE|L1 -96604 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 115.25-63 chr3 532608 532776 + 1.25 NA Intergenic L1M4c|LINE|L1 -59413 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 154.5-54 chr3 110432437 110432619 + 1.25 NA Intergenic L1PA16|LINE|L1 637431 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 119.25-101 chr8 129506274 129506558 + 1.25 NA intron (NR_130917, intron 1 of 3) L1MD|LINE|L1 -22274 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 274.25-9 chr20 44349997 44350372 + 1.25 NA intron (NM_178491, intron 4 of 4) intron (NM_178491, intron 4 of 4) -5515 NM_001030003 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 189.25-18 chr17 40316962 40317290 + 1.25 NA intron (NM_000964, intron 1 of 8) MIR3|SINE|MIR -1119 NM_001145301 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 213.25-34 chr6 133187349 133187548 + 1.25 NA Intergenic Intergenic -53909 NM_001370458 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 153.75-32 chr16 5614307 5614535 + 1.25 NA intron (NR_110902, intron 1 of 2) intron (NR_110902, intron 1 of 2) 1829 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 152-58 chr7 79516482 79516634 + 1.25 NA Intergenic L2b|LINE|L2 62598 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 187.25-30 chr2 173217513 173217772 + 1.25 NA intron (NM_016653, intron 11 of 19) intron (NM_016653, intron 11 of 19) 64394 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 153.25-2 chr1 62908642 62909018 + 1.25 NA Intergenic Intergenic 102095 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 258-32 chr8 125446985 125447246 + 1.25 NA Intergenic Intergenic 14906 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 201-18 chr14 48218847 48219074 + 1.25 NA Intergenic Intergenic -423946 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 278.5-4 chr10 103501864 103502159 + 1.25 NA intron (NR_120675, intron 2 of 3) FLAM_A|SINE|Alu 8306 NM_004210 9148 Hs.594708 NM_004210 ENSG00000107954 NEURL1 NEUR1|NEURL|RNF67|bA416N2.1|neu|neu-1 neuralized E3 ubiquitin protein ligase 1 protein-coding 376.5-3 chr22 25655183 25655779 + 1.25 NA intron (NM_005160, intron 3 of 20) intron (NM_005160, intron 3 of 20) -86707 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 138.5-69 chr3 40412753 40412940 + 1.25 NA intron (NM_001248, intron 5 of 10) intron (NM_001248, intron 5 of 10) 25662 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 318.25-4 chr4 32368380 32368869 + 1.25 NA Intergenic Intergenic 17586 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 163.25-62 chr6 11500536 11500800 + 1.25 NA Intergenic MIR|SINE|MIR -37081 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 176.75-29 chr21 30047798 30048001 + 1.25 NA Intergenic Intergenic -107847 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 144.5-3 chr1 90053888 90054136 + 1.25 NA Intergenic L1MEh|LINE|L1 58902 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 192.5-49 chr5 164826650 164826822 + 1.25 NA Intergenic Intergenic 356457 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 166.5-44 chr17 57492138 57492361 + 1.25 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 31348 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 333.25-3 chr20 34203148 34203585 + 1.25 NA Intergenic L1ME3A|LINE|L1 -56999 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 148.75-11 chr11 97419551 97419696 + 1.25 NA Intergenic L1MC5a|LINE|L1 911198 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 149.25-17 chr12 11585943 11586074 + 1.25 NA Intergenic Intergenic 37978 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 215-21 chr2 30525565 30525852 + 1.25 NA exon (NM_001002257, exon 2 of 6) exon (NM_001002257, exon 2 of 6) 78462 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 208-15 chr2 68469726 68469969 + 1.25 NA intron (NM_173545, intron 1 of 9) intron (NM_173545, intron 1 of 9) 2262 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 181.5-59 chr6 91770299 91770591 + 1.25 NA Intergenic HAL1ME|LINE|L1 -80017 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 218.75-15 chr14 64836006 64836379 + 1.25 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -12812 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 148.75-46 chr3 115457199 115457328 + 1.25 NA Intergenic L1MC3|LINE|L1 -166247 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 222.75-20 chr17 29372016 29372212 + 1.25 NA Intergenic MIRb|SINE|MIR -18548 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 313.75 chr1 91060132 91060481 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -38051 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 226-19 chr22 28403206 28403447 + 1.25 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -56543 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 197.25-21 chr13 88288110 88288451 + 1.25 NA Intergenic Intergenic 145413 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 222.25-32 chr8 132907813 132908059 + 1.25 NA intron (NM_003235, intron 17 of 47) intron (NM_003235, intron 17 of 47) 40978 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 162-9 chr14 52055056 52055317 + 1.25 NA intron (NM_007361, intron 3 of 21) MIRb|SINE|MIR 13873 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 159.5-8 chr1 208249348 208249503 + 1.25 NA Intergenic Intergenic -5041 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 303.25-11 chr22 19397076 19397418 + 1.25 NA intron (NM_003325, intron 6 of 24) intron (NM_003325, intron 6 of 24) 34486 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 385-7 chr4 100070057 100070475 + 1.25 NA Intergenic L1ME3E|LINE|L1 -119767 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 205.75-28 chr3 61120025 61120203 + 1.25 NA intron (NR_148922, intron 2 of 3) MIR|SINE|MIR 131338 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 352.25-3 chr8 85742202 85742662 + 1.25 NA Intergenic L1P1|LINE|L1 3100 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 259-13 chr14 96166406 96166712 + 1.25 NA Intergenic Intergenic -38239 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 153.75-23 chr13 71861868 71862065 + 1.25 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 5226 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 151-68 chr7 76043110 76043253 + 1.25 NA intron (NM_001317786, intron 1 of 8) AluSx1|SINE|Alu 4819 NM_001317787 51657 Hs.11615 NM_016086 ENSG00000127952 STYXL1 DUSP24|MK-STYX|MKSTYX serine/threonine/tyrosine interacting like 1 protein-coding 178-15 chr12 13008262 13008419 + 1.25 NA intron (NR_149067, intron 2 of 2) intron (NR_149067, intron 2 of 2) 7898 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 145.25-44 chr2 151441945 151442079 + 1.25 NA intron (NM_001177665, intron 15 of 33) intron (NM_001177665, intron 15 of 33) 32110 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 173-33 chr21 28540886 28541046 + 1.25 NA TTS (NR_026553) TTS (NR_026553) 1648 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 155-7 chr1 191648330 191648524 + 1.25 NA Intergenic Intergenic -419929 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 150.75-69 chr8 61536271 61536508 + 1.25 NA intron (NM_004318, intron 21 of 24) MER89|LTR|ERV1 153422 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 213.25-8 chr11 5244528 5244718 + 1.25 NA TTS (NR_121648) TTS (NR_121648) 923 NR_121648 103344929 Hs.295459 NR_121648 ENSG00000260629 BGLT3 BGL3|LINC01083|lncRNA-BGL3 beta globin locus transcript 3 ncRNA 175.5-43 chr2 151971065 151971250 + 1.25 NA intron (NM_001330117, intron 2 of 14) intron (NM_001330117, intron 2 of 14) 895 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 179.25-12 chr12 88266312 88266566 + 1.25 NA Intergenic L1M5|LINE|L1 124132 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 196.5-14 chr10 50403854 50404318 + 1.25 NA intron (NM_147156, intron 6 of 10) L1MC4a|LINE|L1 -155476 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 121.25-49 chr4 45600159 45600283 + 1.25 NA Intergenic L1MB5|LINE|L1 523833 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 232.25-21 chr3 187905120 187905376 + 1.25 NA Intergenic L2c|LINE|L2 71159 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 152.5-34 chr14 71629357 71629514 + 1.25 NA intron (NM_001354286, intron 8 of 24) MIR|SINE|MIR 43137 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 173.25-6 chr1 210446858 210447048 + 1.25 NA intron (NM_001122834, intron 7 of 11) L2a|LINE|L2 117587 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 137-61 chr6 43639658 43639803 + 1.25 NA intron (NM_014628, intron 2 of 2) intron (NM_014628, intron 2 of 2) 3890 NM_014628 9587 Hs.122346 NM_014628 ENSG00000124688 MAD2L1BP CMT2 MAD2L1 binding protein protein-coding 216.25-26 chr4 34416064 34416430 + 1.25 NA Intergenic AluSc8|SINE|Alu -146500 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 159-7 chr11 39147872 39148111 + 1.25 NA Intergenic Intergenic 499133 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 222-37 chr5 25239258 25239512 + 1.25 NA intron (NR_136209, intron 1 of 3) AluJr4|SINE|Alu 48432 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 150-58 chr4 117380048 117380251 + 1.25 NA Intergenic L1ME3A|LINE|L1 19497 NR_147152 105377390 Hs.368206 NR_147152 ENSG00000228358 LINC02263 - long intergenic non-protein coding RNA 2263 ncRNA 245.75-8 chr17 11616911 11617117 + 1.25 NA intron (NM_001372, intron 4 of 68) MIRb|SINE|MIR 18544 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 300.25-2 chr1 165181388 165181867 + 1.25 NA Intergenic L1MEd|LINE|L1 174614 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 200.25-2 chr1 90762692 90762910 + 1.25 NA Intergenic AluSx1|SINE|Alu -45499 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 177.75-72 chrX 96127294 96127585 + 1.25 NA Intergenic Intergenic 210463 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 131-65 chr7 11703105 11703262 + 1.25 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 129015 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 152.5-92 chr7 3463778 3463999 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 162636 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 204.25-29 chr2 136618546 136618813 + 1.25 NA Intergenic Intergenic -146866 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 135.25-45 chr2 63682299 63682455 + 1.25 NA Intergenic L1MA2|LINE|L1 93226 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 202-16 chr3 50806823 50807145 + 1.25 NA intron (NM_004947, intron 2 of 52) L1M2c|LINE|L1 131904 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 148-57 chr6 50670333 50670497 + 1.25 NA Intergenic L1ME1|LINE|L1 -43129 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 167-13 chr15 80170601 80170816 + 1.25 NA intron (NM_000137, intron 7 of 13) intron (NM_000137, intron 7 of 13) 17709 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 138-47 chr22 26241556 26241745 + 1.25 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 72176 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 191.75-38 chr6 74361551 74361741 + 1.25 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 292195 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 197.75-15 chr14 98958905 98959135 + 1.25 NA Intergenic MIRb|SINE|MIR 247407 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 209.25-26 chr3 119833045 119833359 + 1.25 NA intron (NM_001354596, intron 9 of 9) intron (NM_001354596, intron 9 of 9) 50492 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 144-79 chr9 107378001 107378154 + 1.25 NA Intergenic Intergenic 88508 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 135-52 chr4 47278251 47278550 + 1.25 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 185302 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 274.5 chr1 203765166 203765443 + 1.25 NA 5' UTR (NM_017773, exon 1 of 5) 5' UTR (NM_017773, exon 1 of 5) 121 NM_001136190 54900 Hs.272794 NM_017773 ENSG00000122188 LAX1 LAX lymphocyte transmembrane adaptor 1 protein-coding 124.75-17 chr11 58197309 58197524 + 1.25 NA Intergenic L1MA8|LINE|L1 6765 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 207-33 chr20 59749079 59749336 + 1.25 NA intron (NM_080672, intron 3 of 12) intron (NM_080672, intron 3 of 12) 27997 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 147.5-45 chr2 38914841 38915110 + 1.25 NA Intergenic Intergenic -4388 NM_001145451 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 169.75-61 chr7 63980600 63980764 + 1.25 NA Intergenic AluSz|SINE|Alu -18124 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 148.5-117 chr9 121089560 121089760 + 1.25 NA intron (NM_007018, intron 1 of 41) intron (NM_007018, intron 1 of 41) 1364 NM_007018 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 176.25-62 chr6 142816805 142816956 + 1.25 NA intron (NM_006734, intron 2 of 9) (GT)n|Simple_repeat|Simple_repeat 128296 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 248.75-12 chr3 112076567 112076865 + 1.25 NA intron (NR_026734, intron 14 of 16) intron (NR_026734, intron 14 of 16) -9619 NM_001171747 79669 Hs.434247 NM_024616 ENSG00000114529 C3orf52 TTMP chromosome 3 open reading frame 52 protein-coding 218.25-22 chr16 17988760 17989031 + 1.25 NA Intergenic Intergenic 343767 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 139.5-111 chr9 31897693 31897963 + 1.25 NA Intergenic Intergenic -486775 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 210.5-21 chr15 99282945 99283316 + 1.25 NA intron (NR_135754, intron 3 of 9) AluSp|SINE|Alu 25605 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 167.25-17 chr10 68880874 68881050 + 1.25 NA intron (NM_152709, intron 1 of 3) AluSx1|SINE|Alu -20353 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 266-17 chr4 182530238 182530626 + 1.25 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 287030 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 188.75-13 chr15 83765401 83765613 + 1.25 NA intron (NM_207517, intron 3 of 29) intron (NM_207517, intron 3 of 29) 111384 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 198.25-23 chr2 79669121 79669372 + 1.25 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -19887 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 218.25-32 chr3 196491788 196492027 + 1.25 NA intron (NM_152617, intron 1 of 5) L1MB3|LINE|L1 11861 NM_152617 165918 Hs.250648 NM_152617 ENSG00000163961 RNF168 hRNF168 ring finger protein 168 protein-coding 186.75-47 chr5 27864595 27864905 + 1.25 NA Intergenic L1PA16|LINE|L1 392458 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 234.25 chr1 14344054 14344643 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie 75625 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 174.25 chr1 29849438 29849702 + 1.25 NA Intergenic LTR16C|LTR|ERVL 188042 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 181-42 chr6 141862824 141863085 + 1.25 NA Intergenic L1MA7|LINE|L1 225845 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 136.25-50 chr22 28449154 28449471 + 1.25 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -10557 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 126-61 chr3 97021030 97021189 + 1.25 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 206515 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 186.25-7 chr10 64803002 64803222 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL -22416 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 131.75-79 chr8 91375820 91375948 + 1.25 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 126565 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 225.5-28 chr22 22850921 22851188 + 1.25 NA Intergenic Intergenic 28278 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 136.75-35 chr15 53624963 53625268 + 1.25 NA intron (NM_182758, intron 14 of 19) intron (NM_182758, intron 14 of 19) -84012 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 135.75-39 chr17 61190131 61190413 + 1.25 NA intron (NM_001330413, intron 23 of 25) AluSx|SINE|Alu 177432 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 268 chr1 113945449 113945863 + 1.25 NA intron (NM_198268, intron 2 of 15) L1MB4|LINE|L1 -5489 NM_198269 204851 Hs.532363 NM_152696 ENSG00000163349 HIPK1 Myak|Nbak2 homeodomain interacting protein kinase 1 protein-coding 232.5-49 chr8 130706961 130707157 + 1.25 NA Intergenic MSTA-int|LTR|ERVL-MaLR -263385 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 234.5-9 chr11 86344269 86344559 + 1.25 NA intron (NM_001322404, intron 3 of 4) AluJr|SINE|Alu -30322 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 133-45 chr3 112345863 112345975 + 1.25 NA intron (NR_158642, intron 4 of 6) intron (NR_158642, intron 4 of 6) 12763 NR_158642 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 283.5-4 chr11 34811102 34811434 + 1.25 NA Intergenic Intergenic -104862 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 248-5 chr15 101347668 101348186 + 1.25 NA intron (NM_138323, intron 13 of 13) LTR16D|LTR|ERVL 13490 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 148.5-40 chr17 72018907 72019140 + 1.25 NA Intergenic Intergenic 6956 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 198.75-51 chr8 140015002 140015203 + 1.25 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 85433 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 145-5 chr10 32348457 32348628 + 1.25 NA intron (NR_104163, intron 1 of 1) intron (NR_104163, intron 1 of 1) 1178 NR_104163 102031319 Hs.128132 NR_104163 ENSG00000229327 LOC102031319 - uncharacterized LOC102031319 ncRNA 219.5-14 chr14 62492164 62492535 + 1.25 NA Intergenic L1MB3|LINE|L1 -352376 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 239.5-8 chr14 49167156 49167405 + 1.25 NA Intergenic L2a|LINE|L2 419100 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 170.5-35 chr17 32650446 32650723 + 1.25 NA intron (NM_015194, intron 19 of 21) L1MEc|LINE|L1 163591 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 226.75-7 chr11 23672789 23673041 + 1.25 NA Intergenic Tigger4b|DNA|TcMar-Tigger -253725 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 113.5-105 chr6 54777792 54777919 + 1.25 NA Intergenic Intergenic -68916 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 223.5-47 chr21 28518902 28519323 + 1.25 NA Intergenic L1MB4|LINE|L1 -20206 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 220.5-31 chr3 5952883 5953110 + 1.25 NA Intergenic Intergenic -702741 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 168.5-30 chr15 61903445 61903602 + 1.25 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 156924 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 235.75-24 chr5 134959515 134959747 + 1.25 NA intron (NM_032151, intron 3 of 3) intron (NM_032151, intron 3 of 3) -8276 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 179-39 chr22 20170917 20171139 + 1.25 NA Intergenic AluJo|SINE|Alu -19973 NM_001365892 388849 Hs.454905 NM_001243537 ENSG00000234409 CCDC188 - coiled-coil domain containing 188 protein-coding 223.5-55 chr4 53093908 53094226 + 1.25 NA intron (NM_152540, intron 5 of 8) MIRc|SINE|MIR 231750 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 235-17 chr17 80553542 80553936 + 1.25 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 8901 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 168.5-15 chr12 39683375 39683557 + 1.25 NA exon (NM_001319247, exon 9 of 11) exon (NM_001319247, exon 9 of 11) 57283 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 212-4 chr10 34384755 34385110 + 1.25 NA intron (NM_001184789, intron 7 of 22) intron (NM_001184789, intron 7 of 22) 430364 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 162.75-71 chr8 63713145 63713443 + 1.25 NA Intergenic Intergenic -56136 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 138.25-7 chr1 163867233 163867487 + 1.25 NA Intergenic HAL1|LINE|L1 -444169 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 207-13 chr12 73203202 73203490 + 1.25 NA intron (NR_110130, intron 2 of 3) L2|LINE|L2 44156 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 162.5-51 chr20 63037205 63037421 + 1.25 NA promoter-TSS (NR_028295) promoter-TSS (NR_028295) -285 NR_028295 100144596 Hs.187773 NM_022099 LINC00029 C20orf51|NCRNA00029 long intergenic non-protein coding RNA 29 ncRNA 184.75-15 chr12 45026599 45026834 + 1.25 NA intron (NM_001004329, intron 2 of 3) intron (NM_001004329, intron 2 of 3) 24383 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 129-37 chr2 108855545 108855712 + 1.25 NA intron (NM_001351549, intron 12 of 13) intron (NM_001351549, intron 12 of 13) 68857 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 233.75-17 chr2 38843492 38843845 + 1.25 NA intron (NM_001329963, intron 11 of 23) intron (NM_001329963, intron 11 of 23) 32266 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 196.75-9 chr14 57320574 57320860 + 1.25 NA Intergenic Intergenic 51746 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 152-43 chr3 95995555 95995720 + 1.25 NA Intergenic Intergenic -312444 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 115-63 chr5 125218380 125218517 + 1.25 NA intron (NR_109882, intron 4 of 5) L1MB2|LINE|L1 181617 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 146.5-54 chr20 38456002 38456376 + 1.25 NA Intergenic Intergenic 6820 NR_002986 677837 Hs.16936 NR_002986 ENSG00000199266 SNORA60 ACA60 small nucleolar RNA, H/ACA box 60 snoRNA 127.5-131 chr9 123176409 123176568 + 1.25 NA intron (NM_001171137, intron 4 of 18) intron (NM_001171137, intron 4 of 18) -61011 NR_026677 81571 Hs.708072 NM_030814 ENSG00000236901 MIR600HG C9orf45|GL012|NCRNA00287 MIR600 host gene ncRNA 164.75-53 chr4 152430021 152430222 + 1.25 NA intron (NM_001349798, intron 2 of 13) intron (NM_001349798, intron 2 of 13) -47592 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 156-25 chr12 125720602 125720726 + 1.25 NA Intergenic Intergenic 98212 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 218-40 chr5 134901447 134901758 + 1.25 NA TTS (NM_001350735) TTS (NM_001350735) -3518 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 113.75-21 chr10 76570444 76570612 + 1.25 NA Intergenic L1MEf|LINE|L1 -317516 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 130-13 chr11 84749532 84749722 + 1.25 NA intron (NM_001351274, intron 5 of 26) Tigger3a|DNA|TcMar-Tigger -28685 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 203.25-37 chr4 40162030 40162292 + 1.25 NA Intergenic LTR67B|LTR|ERVL -28919 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 126.25-21 chr11 63537655 63537813 + 1.25 NA intron (NM_004585, intron 1 of 3) Tigger19b|DNA|TcMar-Tigger 926 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 PLAAT4 HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3 phospholipase A and acyltransferase 4 protein-coding 187.5-42 chr2 148032802 148032968 + 1.25 NA intron (NM_018328, intron 2 of 14) Tigger16a|DNA|TcMar-Tigger -11281 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 211.5-25 chr2 79413242 79413814 + 1.25 NA Intergenic L1MA8|LINE|L1 87316 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 265.75-2 chr10 11506754 11507185 + 1.25 NA intron (NM_014688, intron 6 of 14) intron (NM_014688, intron 6 of 14) 25311 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 194-27 chr4 63874940 63875120 + 1.25 NA Intergenic Intergenic 534420 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 224.5-11 chr12 12720710 12720974 + 1.25 NA intron (NM_004064, intron 2 of 2) intron (NM_004064, intron 2 of 2) 3572 NM_004064 1027 Hs.238990 NM_004064 ENSG00000111276 CDKN1B CDKN4|KIP1|MEN1B|MEN4|P27KIP1 cyclin dependent kinase inhibitor 1B protein-coding 246-35 chr8 84073547 84073916 + 1.25 NA Intergenic L1PA16|LINE|L1 -109056 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 268.5-23 chr5 8612201 8612571 + 1.25 NA Intergenic Intergenic 151461 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 295-11 chr5 12680826 12681202 + 1.25 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 13155 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 267-17 chr3 103093252 103093505 + 1.25 NA Intergenic L1MB8|LINE|L1 430738 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 379.75-3 chr8 131738653 131739102 + 1.25 NA Intergenic Intergenic -165216 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 274.25-12 chr5 69163098 69163559 + 1.25 NA Intergenic L1MA4|LINE|L1 2520 NR_145732 109616958 NR_145732 ENSG00000280894 SNORA50D - small nucleolar RNA, H/ACA box 50D snoRNA 196.5-28 chr14 64751595 64751853 + 1.25 NA intron (NM_001024858, intron 32 of 34) intron (NM_001024858, intron 32 of 34) 33962 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 228.25-43 chrX 131150484 131150730 + 1.25 NA Intergenic L1ME3A|LINE|L1 68172 NM_001330651 158763 Hs.22905 NM_144967 ENSG00000147256 ARHGAP36 - Rho GTPase activating protein 36 protein-coding 125.75-2 chr1 7755720 7755832 + 1.25 NA intron (NM_001349619, intron 13 of 13) intron (NM_001349619, intron 13 of 13) -15520 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 128.5-14 chr12 2157663 2157804 + 1.25 NA intron (NM_199460, intron 3 of 49).2 HAL1|LINE|L1 65748 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 190-31 chr20 61022949 61023113 + 1.25 NA Intergenic Intergenic -56033 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 196.75-44 chr8 76525802 76526022 + 1.25 NA Intergenic Intergenic 119258 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 218.75-26 chr4 36087962 36088208 + 1.25 NA intron (NR_146894, intron 28 of 32) intron (NR_146894, intron 28 of 32) 155854 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 212-7 chr10 122710466 122710839 + 1.25 NA Intergenic Intergenic -10806 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 176.75-54 chr9 37194324 37194535 + 1.25 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 73831 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 207.25-27 chr5 85444325 85444644 + 1.25 NA Intergenic Intergenic -837960 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 349.5-6 chr6 142354502 142354845 + 1.25 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 52666 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 127.25-84 chr6 68765888 68766016 + 1.25 NA intron (NM_001704, intron 3 of 31) L1M5|LINE|L1 130670 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 161-55 chr5 100552588 100552773 + 1.25 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 17306 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 188.75-47 chr7 48006775 48006995 + 1.25 NA intron (NM_001030019, intron 5 of 9) intron (NM_001030019, intron 5 of 9) 22222 NM_001030019 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 229.75-25 chr5 105126983 105127383 + 1.25 NA Intergenic Intergenic 27709 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 207-20 chr17 78772222 78772424 + 1.25 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 9885 NM_001365039 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 236.5-40 chr5 32497640 32497972 + 1.25 NA Intergenic Intergenic -53066 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 167-45 chr3 106055412 106055742 + 1.25 NA Intergenic L1MC3|LINE|L1 -186176 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 166.25-58 chr8 136090556 136090706 + 1.25 NA Intergenic Intergenic -440167 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 215.25-23 chr4 71460787 71461118 + 1.25 NA intron (NM_003759, intron 9 of 22) intron (NM_003759, intron 9 of 22) 121899 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 194.25-28 chr2 146396608 146396810 + 1.25 NA Intergenic Intergenic -190348 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 136.5-70 chr3 100716608 100716834 + 1.25 NA intron (NM_001007565, intron 2 of 7) L1MA5A|LINE|L1 7179 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 205-43 chr9 11730318 11730526 + 1.25 NA Intergenic Charlie5|DNA|hAT-Charlie -962963 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 193.75-29 chr20 5296492 5296688 + 1.25 NA Intergenic Intergenic 20142 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 175-45 chr4 79785637 79785896 + 1.25 NA Intergenic Intergenic -41705 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 166-57 chr8 82803623 82803784 + 1.25 NA Intergenic Intergenic -108401 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 142-70 chr8 79933931 79934108 + 1.25 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) -62282 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 161.25-39 chr2 58638412 58638664 + 1.25 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 117785 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 277.5-12 chr3 134994486 134994901 + 1.25 NA intron (NM_004441, intron 3 of 15) FLAM_A|SINE|Alu 199433 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 159.75-31 chr20 52586482 52586684 + 1.25 NA Intergenic Intergenic -34255 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 182.5-2 chr1 34027635 34027931 + 1.25 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 137491 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 237.5-18 chr18 36819999 36820261 + 1.25 NA intron (NM_001330572, intron 1 of 6) MIR|SINE|MIR 8872 NM_001271953 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 138.25-25 chr14 50701560 50701702 + 1.25 NA Intergenic AluJb|SINE|Alu -33325 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 166.25-22 chr16 87213206 87213486 + 1.25 NA intron (NR_110939, intron 2 of 2) intron (NR_110939, intron 2 of 2) 1231 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 165.75-25 chr16 60925475 60925661 + 1.25 NA Intergenic Intergenic 130198 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 315.5-2 chr14 87402714 87403182 + 1.25 NA Intergenic Intergenic 252346 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 132.25-86 chr8 69724966 69725104 + 1.25 NA intron (NM_001146009, intron 3 of 7) intron (NM_001146009, intron 3 of 7) 108134 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 185-32 chr4 31642678 31642983 + 1.25 NA Intergenic Intergenic 136286 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 122-11 chr10 101667801 101668009 + 1.25 NA exon (NM_001323541, exon 5 of 9) exon (NM_001323541, exon 5 of 9) 27265 NM_022039 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 161.25-58 chr4 99448090 99448230 + 1.25 NA Intergenic MER65A|LTR|ERV1 -12650 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 279.5-5 chr15 62554787 62555179 + 1.25 NA Intergenic Intergenic 90198 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 260.75-16 chr4 15665763 15666065 + 1.25 NA Intergenic Intergenic -10502 NR_036464 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 114.5-84 chr5 90065809 90065907 + 1.25 NA Intergenic Intergenic -49138 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 132.5-104 chr7 46488803 46489045 + 1.25 NA Intergenic Intergenic 208198 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 168.5-70 chr7 122244672 122244908 + 1.25 NA Intergenic Intergenic -58868 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 222.75-40 chr6 42524606 42524991 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR -39224 NM_015255 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 194-11 chr12 80646225 80646415 + 1.25 NA intron (NM_001145026, intron 35 of 44) MIR|SINE|MIR -61314 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 119.75-89 chr8 130701214 130701357 + 1.25 NA Intergenic MER44A|DNA|TcMar-Tigger -257611 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 188-11 chr13 95794493 95794882 + 1.25 NA 3' UTR (NM_006260, exon 12 of 12) 3' UTR (NM_006260, exon 12 of 12) 117548 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 204.5-62 chr7 81821777 81821963 + 1.25 NA Intergenic Intergenic -51823 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 166.25-35 chr2 209990197 209990380 + 1.25 NA intron (NM_032504, intron 60 of 63) intron (NM_032504, intron 60 of 63) -12277 NM_001278288 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 142-35 chr2 240712664 240712917 + 1.25 NA TTS (NM_001244008) TTS (NM_001244008) 20924 NM_198998 375318 Hs.534650 NM_198998 ENSG00000184945 AQP12A AQP-12|AQP12|AQPX2 aquaporin 12A protein-coding 164.5-98 chr8 132114304 132114482 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -9128 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 147.5-86 chr9 90050305 90050481 + 1.25 NA Intergenic AluSq2|SINE|Alu -8894 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 257-6 chr16 4599615 4600123 + 1.25 NA intron (NM_001145011, intron 15 of 15) intron (NM_001145011, intron 15 of 15) 15019 NM_001330467 124402 Hs.513313 NM_145253 ENSG00000153443 UBALD1 FAM100A|PP11303 UBA like domain containing 1 protein-coding 263-16 chr3 11550586 11550832 + 1.25 NA intron (NM_001349238, intron 17 of 17) L1ME4b|LINE|L1 18089 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 165.5-63 chr3 100144906 100145231 + 1.25 NA intron (NM_001167924, intron 1 of 9) intron (NM_001167924, intron 1 of 9) 30138 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 237.25-4 chr10 33317585 33317930 + 1.25 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 16910 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 121.5-29 chr13 68146368 68146518 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 738882 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 132.75-72 chr4 58785432 58785588 + 1.25 NA Intergenic MER31-int|LTR|ERV1 -198772 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 226.25-25 chr4 88544786 88544968 + 1.25 NA Intergenic L1PA6|LINE|L1 21067 NR_134662 101929134 Hs.734064 NR_134662 ENSG00000285122 PIGY-DT - PIGY divergent transcript ncRNA 164.75-68 chrX 43161494 43161747 + 1.25 NA Intergenic L1MD2|LINE|L1 -15374 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 137-28 chr15 54489836 54489979 + 1.25 NA intron (NM_001329919, intron 18 of 31) intron (NM_001329919, intron 18 of 31) 477259 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 296-6 chr13 92286982 92287373 + 1.25 NA intron (NM_004466, intron 7 of 7) L1M4|LINE|L1 65030 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 147-24 chr14 34940804 34941007 + 1.25 NA TTS (NR_002937) TTS (NR_002937) 983 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 119.75-6 chr10 20430140 20430297 + 1.25 NA Intergenic L1MD3|LINE|L1 -121752 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 161.75-7 chr11 81890327 81890536 + 1.25 NA TTS (NR_036186) TTS (NR_036186) 405 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 349.75-5 chr3 147198852 147199332 + 1.25 NA Intergenic Intergenic 193338 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 140.25-66 chr5 31940315 31940477 + 1.25 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -4237 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 159.75-19 chr14 73998321 73998556 + 1.25 NA intron (NM_001330189, intron 3 of 16) LTR3B|LTR|ERVK 20850 NM_001321987 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 126.75-44 chr2 158959627 158959819 + 1.25 NA Intergenic AluY|SINE|Alu -8911 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 194.25-49 chr8 138567231 138567439 + 1.25 NA Intergenic L3|LINE|CR1 -69605 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 161.75-61 chr8 71297891 71298091 + 1.25 NA intron (NM_001370336, intron 10 of 17) intron (NM_001370336, intron 10 of 17) 58715 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 206.75-15 chr18 39766076 39766372 + 1.25 NA Intergenic L1ME1|LINE|L1 -14229 NR_024391 647946 Hs.649350 NR_024391 ENSG00000267374 MIR924HG LINC00669 MIR924 host gene ncRNA 205.5-27 chr2 125227532 125227801 + 1.25 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 890319 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 153.5-8 chr10 16678308 16678530 + 1.25 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) 139005 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 174.75-10 chr11 93067530 93067724 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie 98004 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 256.5-27 chr21 29445696 29446010 + 1.25 NA Intergenic L1M5|LINE|L1 -50194 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 127.5-86 chr3 142723574 142723880 + 1.25 NA promoter-TSS (NM_003304) promoter-TSS (NM_003304) -307 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 184.5-60 chr5 40094374 40094663 + 1.25 NA Intergenic Intergenic 42227 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 167.5-4 chr10 11230432 11230691 + 1.25 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 65531 NM_001025076 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 361.75-6 chr6 41112876 41113391 + 1.25 NA intron (NR_026938, intron 6 of 22) MLT2A1|LTR|ERVL 12099 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - ADCY10 pseudogene 1 pseudo 196.75-26 chr3 114703126 114703448 + 1.25 NA intron (NM_001348805, intron 5 of 10) intron (NM_001348805, intron 5 of 10) 40238 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 183.75-16 chr14 58515544 58515837 + 1.25 NA 3' UTR (NM_001364700, exon 30 of 30) 3' UTR (NM_001364700, exon 30 of 30) 76009 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 240.5-8 chr10 29940594 29940852 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR 118863 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 144.25-40 chr2 123256059 123256238 + 1.25 NA Intergenic L1MCb|LINE|L1 -182667 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 268-22 chr5 16393799 16394078 + 1.25 NA intron (NR_104625, intron 7 of 8) AluSz|SINE|Alu 47164 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 131.25 chr1 41986112 41986408 + 1.25 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 49674 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 404-2 chr14 30911452 30911914 + 1.25 NA intron (NM_001083893, intron 12 of 17) intron (NM_001083893, intron 12 of 17) -21875 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 190.5-69 chr7 8466252 8466601 + 1.25 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 32817 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 236.75-21 chr8 93596717 93597054 + 1.25 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 103548 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 170.5-51 chr3 69271606 69271830 + 1.25 NA intron (NM_015123, intron 5 of 22) AluSx1|SINE|Alu 114370 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 124.75-57 chr22 23701257 23701420 + 1.25 NA intron (NR_024448, intron 6 of 11) L1PA16|LINE|L1 4922 NM_001329425 266747 Hs.658997 NM_153615 ENSG00000159496 RGL4 Rgr ral guanine nucleotide dissociation stimulator like 4 protein-coding 233-5 chr1 98338320 98338518 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 127708 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 303.25-12 chr22 36234210 36234493 + 1.25 NA intron (NM_030882, intron 1 of 4) intron (NM_030882, intron 1 of 4) 5176 NM_030882 23780 Hs.474740 NM_030882 ENSG00000128335 APOL2 APOL-II|APOL3 apolipoprotein L2 protein-coding 126.75-5 chr1 116037133 116037278 + 1.25 NA intron (NM_018420, intron 7 of 11) intron (NM_018420, intron 7 of 11) -59929 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 171.5-58 chr4 115046251 115046502 + 1.25 NA intron (NM_022569, intron 2 of 13) Charlie2a|DNA|hAT-Charlie 67244 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 179.25-35 chr5 110771676 110771938 + 1.25 NA Intergenic L1MC4a|LINE|L1 32800 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 201.75-5 chr10 103287810 103287998 + 1.25 NA intron (NM_032727, intron 2 of 2) intron (NM_032727, intron 2 of 2) 10766 NM_032727 9118 Hs.500916 NM_032727 ENSG00000148798 INA NEF5|NF-66|TXBP-1 internexin neuronal intermediate filament protein alpha protein-coding 195-10 chr10 123025400 123025653 + 1.25 NA intron (NM_001609, intron 1 of 10) L1ME4b|LINE|L1 16520 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 156.5-55 chr4 142446078 142446342 + 1.25 NA intron (NM_001331040, intron 3 of 25) L1ME3C|LINE|L1 400325 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 131-40 chr3 123265114 123265234 + 1.25 NA intron (NM_012430, intron 6 of 6) MER2|DNA|TcMar-Tigger 63231 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 252.25-6 chr14 81652225 81652598 + 1.25 NA Intergenic Intergenic -29350 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 208-21 chr20 44743893 44744182 + 1.25 NA intron (NR_132377, intron 1 of 4) intron (NR_132377, intron 1 of 4) -1828 NM_022358 60598 Hs.528664 NM_022358 ENSG00000124249 KCNK15 K2p15.1|KCNK11|KCNK14|KT3.3|TASK-5|TASK5|dJ781B1.1 potassium two pore domain channel subfamily K member 15 protein-coding 154.75-61 chr7 38194814 38194988 + 1.25 NA intron (NM_001363344, intron 2 of 8) intron (NM_001363344, intron 2 of 8) 16656 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 250.75-25 chr8 73916917 73917197 + 1.25 NA Intergenic MER101-int|LTR|ERV1 38075 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 136.5-99 chr6 146460109 146460306 + 1.25 NA Intergenic L1MA4|LINE|L1 -83626 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 125.75-58 chr5 30647607 30647813 + 1.25 NA Intergenic L1ME2z|LINE|L1 -545976 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 179.25-48 chr7 88761154 88761468 + 1.25 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) 1611 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 226.75-25 chr5 111484508 111484721 + 1.25 NA 3' UTR (NM_001323377, exon 10 of 10) 3' UTR (NM_001323377, exon 10 of 10) -27612 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 135.75-59 chr20 53291978 53292142 + 1.25 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 106777 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 149-39 chr3 170888235 170888427 + 1.25 NA TTS (NM_020390) TTS (NM_020390) -18136 NM_001099645 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 170.5-13 chr10 56827168 56827327 + 1.25 NA Intergenic L1PB4|LINE|L1 -465974 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 204.25-30 chr2 178873718 178873946 + 1.25 NA 3' UTR (NM_001316745, exon 12 of 12) 3' UTR (NM_001316745, exon 12 of 12) -66409 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 126-18 chr11 90130689 90130852 + 1.25 NA Intergenic Intergenic -3893 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 128-22 chr18 80240317 80240471 + 1.25 NA intron (NM_032510, intron 1 of 2) intron (NM_032510, intron 1 of 2) 7120 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 203.75-21 chr2 18249220 18249418 + 1.25 NA Intergenic Intergenic 311334 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 258.25-2 chr1 111572386 111572670 + 1.25 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -8525 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 205.75-29 chr3 108641771 108641994 + 1.25 NA intron (NM_014648, intron 12 of 32) intron (NM_014648, intron 12 of 32) 52160 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 286.5-14 chr6 126338465 126338707 + 1.25 NA Intergenic L2a|LINE|L2 -1203 NM_001286524 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 341 chr10 112678441 112678812 + 1.25 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 44456 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 172.75-8 chr11 99594750 99594992 + 1.25 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 38726 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 181.75-12 chr14 70030709 70030902 + 1.25 NA 3' UTR (NM_022137, exon 12 of 12) 3' UTR (NM_022137, exon 12 of 12) 49412 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 184-23 chr2 81671936 81672085 + 1.25 NA Intergenic Intergenic -205064 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 119.25-43 chr2 15090610 15090710 + 1.25 NA Intergenic Intergenic 457943 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 209.75-45 chr9 36582591 36582809 + 1.25 NA intron (NM_001256690, intron 2 of 15) intron (NM_001256690, intron 2 of 15) 9805 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 169.75-63 chr8 112205710 112205965 + 1.25 NA Intergenic L1MA7|LINE|L1 -437656 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 344-6 chr2 198400481 198400864 + 1.25 NA Intergenic Intergenic -25575 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 177.5-28 chr19 34817695 34817950 + 1.25 NA intron (NR_033982, intron 5 of 5) intron (NR_033982, intron 5 of 5) 15047 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 161.25-81 chr9 79458715 79458966 + 1.25 NA Intergenic Charlie7|DNA|hAT-Charlie -112933 NM_001351564 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 167-6 chr11 13772374 13772690 + 1.25 NA Intergenic Intergenic -11854 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 163.25-74 chr9 30131171 30131405 + 1.25 NA Intergenic Intergenic 277166 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 254.75-2 chr1 104725941 104726275 + 1.25 NA Intergenic L1MA8|LINE|L1 653085 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 163.25-36 chr2 8876939 8877098 + 1.25 NA intron (NR_135606, intron 7 of 12) intron (NR_135606, intron 7 of 12) -39405 NM_001348742 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 137-3 chr1 90047118 90047328 + 1.25 NA Intergenic Intergenic 52113 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 180-31 chr17 78956926 78957200 + 1.25 NA Intergenic L3|LINE|CR1 22860 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 138.5-62 chr2 193630560 193630731 + 1.25 NA Intergenic L1M1|LINE|L1 -713624 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 390.25-5 chr9 101881352 101881729 + 1.25 NA Intergenic Intergenic -142960 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 327.5-6 chr2 189346546 189346882 + 1.25 NA Intergenic LTR33A|LTR|ERVL -94719 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 131.25-59 chr3 75037350 75037633 + 1.25 NA Intergenic L1PA17|LINE|L1 -176985 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 187.75-44 chr5 123270289 123270499 + 1.25 NA Intergenic Intergenic 153198 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 167-19 chr17 29405757 29405973 + 1.25 NA intron (NM_025142, intron 1 of 17) intron (NM_025142, intron 1 of 17) 14940 NM_020791 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 244.5-6 chr11 79057956 79058493 + 1.25 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 343885 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 168.25-59 chr7 73343638 73343853 + 1.25 NA intron (NM_001362789, intron 7 of 7) intron (NM_001362789, intron 7 of 7) 15584 NM_001281304 8468 Hs.661266 NM_003602 ENSG00000077800 FKBP6 FKBP36 FKBP prolyl isomerase 6 protein-coding 278-22 chr6 106025053 106025465 + 1.25 NA Intergenic Intergenic -61077 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 239.25-24 chr5 77442186 77442393 + 1.25 NA intron (NM_018268, intron 8 of 12) L1ME4a|LINE|L1 50027 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 173.25-13 chr13 22329627 22329785 + 1.25 NA Intergenic Tigger4|DNA|TcMar-Tigger 119421 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 271.75-15 chrX 72203781 72204070 + 1.25 NA TTS (NM_017669) TTS (NM_017669) 22168 NM_006223 5303 Hs.655623 NM_006223 ENSG00000102309 PIN4 EPVH|PAR14|PAR17 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 protein-coding 157.5-79 chr4 125152427 125152576 + 1.25 NA Intergenic Intergenic -163911 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 144.5-100 chr6 134374604 134374739 + 1.25 NA Intergenic L2a|LINE|L2 -56613 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 295.75-5 chr15 66319339 66319708 + 1.25 NA intron (NM_001323944, intron 8 of 16) intron (NM_001323944, intron 8 of 16) 25708 NM_001323944 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 150.25-65 chr6 34828491 34828709 + 1.25 NA intron (NM_017754, intron 4 of 20) L1MC5|LINE|L1 36517 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 165.75-36 chr2 214402402 214402626 + 1.25 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -8540 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 212.25-24 chr20 60835483 60836013 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -243316 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 184.25-42 chr6 40602265 40602521 + 1.25 NA Intergenic Intergenic -15029 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 164-35 chr20 48937786 48938014 + 1.25 NA intron (NM_006420, intron 1 of 38) intron (NM_006420, intron 1 of 38) 16189 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 113.75-15 chr10 20029115 20029233 + 1.25 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 212742 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 251-27 chr6 140513785 140514076 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -169884 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 500-2 chr13 112164610 112165329 + 1.25 NA Intergenic LTR8B|LTR|ERV1 -4259 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 149-2 chr1 75776071 75776294 + 1.25 NA Intergenic L1MEd|LINE|L1 -10012 NR_073562 5876 Hs.78948 NM_004582 ENSG00000137955 RABGGTB GGTB Rab geranylgeranyltransferase subunit beta protein-coding 242.75-9 chr2 20945943 20946255 + 1.25 NA Intergenic Intergenic 97974 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 116.25-49 chr2 108412480 108412752 + 1.25 NA Intergenic AluSx3|SINE|Alu 34662 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 249.75-11 chr17 21217315 21217789 + 1.25 NA Intergenic AluJr|SINE|Alu -2957 NM_003876 8834 Hs.592945 NM_003876 ENSG00000178307 TMEM11 C17orf35|PM1|PMI transmembrane protein 11 protein-coding 136.25-27 chr14 75732244 75732385 + 1.25 NA intron (NM_015072, intron 12 of 31) intron (NM_015072, intron 12 of 31) 71068 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 177.5-8 chr10 38527789 38528070 + 1.25 NA Intergenic Intergenic 99783 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 144.25-55 chr4 37013345 37013505 + 1.25 NA intron (NR_134669, intron 1 of 1) L1ME1|LINE|L1 11646 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 177.25-51 chr7 35619214 35619434 + 1.25 NA Intergenic Intergenic 75811 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 258-5 chr1 197061503 197061796 + 1.25 NA intron (NM_001994, intron 3 of 11) intron (NM_001994, intron 3 of 11) 5618 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 223.5-17 chr11 100246921 100247175 + 1.25 NA intron (NM_001243270, intron 15 of 23) L2a|LINE|L2 -440240 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 223.5-62 chr5 38548004 38548194 + 1.25 NA intron (NM_002310, intron 1 of 19) MER124|DNA?|DNA? 8547 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 180.75-29 chr16 59758595 59758857 + 1.25 NA Intergenic Intergenic -3535 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 181.5-26 chr18 1360252 1360453 + 1.25 NA promoter-TSS (NR_023925) promoter-TSS (NR_023925) -723 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 250.25-19 chr7 8749935 8750205 + 1.25 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 316461 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 140.25-22 chr14 52602787 52602927 + 1.25 NA intron (NM_001099652, intron 3 of 6) L1MA4|LINE|L1 50021 NM_001099652 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 185.5-18 chr11 62853766 62853939 + 1.25 NA promoter-TSS (NR_000008) promoter-TSS (NR_000008) 116 NR_002559 9297 NR_002559 SNORD29 RNU29|U29 small nucleolar RNA, C/D box 29 snoRNA 135.75-19 chr11 11862218 11862461 + 1.25 NA intron (NM_017944, intron 1 of 26) intron (NM_017944, intron 1 of 26) 20916 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 239-29 chr6 123371997 123372333 + 1.25 NA intron (NM_001251987, intron 19 of 20) intron (NM_001251987, intron 19 of 20) -67439 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 265-15 chr18 12679608 12680095 + 1.25 NA intron (NM_001271989, intron 8 of 10) AluJo|SINE|Alu 21112 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 313-15 chr8 115958845 115959334 + 1.25 NA intron (NR_046215, intron 11 of 13) intron (NR_046215, intron 11 of 13) -290114 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 245-40 chrX 9843764 9844136 + 1.25 NA intron (NM_001649, intron 1 of 9) intron (NM_001649, intron 1 of 9) 57521 NM_001649 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 180.5-18 chr11 80528729 80528960 + 1.25 NA Intergenic Intergenic 233959 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 147.5-13 chr11 17835914 17836148 + 1.25 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 100083 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 234-2 chr1 87076748 87077014 + 1.25 NA intron (NM_012262, intron 2 of 6) intron (NM_012262, intron 2 of 6) -52884 NR_026988 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 262-14 chr15 99295716 99295998 + 1.25 NA intron (NM_001321677, intron 5 of 8) intron (NM_001321677, intron 5 of 8) 38332 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 223.5 chr1 10620811 10621095 + 1.25 NA intron (NM_004565, intron 5 of 8) intron (NM_004565, intron 5 of 8) 146003 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 121.25-47 chr4 6652679 6652872 + 1.25 NA Intergenic L1MB5|LINE|L1 12684 NM_001272054 93621 Hs.406590 NM_033296 ENSG00000179010 MRFAP1 PAM14|PGR1 Morf4 family associated protein 1 protein-coding 133.5-72 chr3 196744402 196744527 + 1.25 NA intron (NM_002577, intron 1 of 14) AluJb|SINE|Alu 4607 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 133.5-59 chr3 5952308 5952511 + 1.25 NA Intergenic Intergenic -702154 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 308.5-7 chr18 7760919 7761335 + 1.25 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 193811 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 227.5-21 chr16 66246099 66246392 + 1.25 NA Intergenic Intergenic -120446 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 216-39 chr7 55476101 55476379 + 1.25 NA intron (NM_001321242, intron 4 of 4) intron (NM_001321242, intron 4 of 4) 50640 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 151.75-46 chr2 167945997 167946157 + 1.25 NA Intergenic MER72|LTR|ERV1 -4933 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 155-65 chr9 134921316 134921454 + 1.25 NA Intergenic L1ME3B|LINE|L1 -3473 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 167.25-39 chr20 15391427 15391573 + 1.25 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 194660 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 212.5-5 chr10 60729846 60730059 + 1.25 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 3576 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 288-20 chrX 94077150 94077466 + 1.25 NA Intergenic MSTA-int|LTR|ERVL-MaLR 403102 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 235-10 chr13 56143049 56143377 + 1.25 NA Intergenic SVA_C|Retroposon|SVA 968759 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 149.5-109 chr8 124362266 124362496 + 1.25 NA intron (NM_194291, intron 1 of 6) AluSz6|SINE|Alu 10318 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 208.5-59 chr5 23280059 23280298 + 1.25 NA Intergenic Intergenic -227431 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 266.25-3 chr1 184168900 184169380 + 1.25 NA Intergenic L1MA3|LINE|L1 117410 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 178.75-9 chr13 48442425 48442685 + 1.25 NA intron (NM_005767, intron 1 of 6) intron (NM_005767, intron 1 of 6) 2114 NM_005767 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 122.5-62 chr3 130320100 130320270 + 1.25 NA Intergenic HAL1|LINE|L1 -25331 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 127.25-64 chr3 181887929 181888067 + 1.25 NA Intergenic Intergenic -64366 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 170-8 chr12 33885230 33885384 + 1.25 NA Intergenic L1MD3|LINE|L1 -137189 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 174.25-21 chr12 43757601 43757762 + 1.25 NA intron (NM_031292, intron 1 of 8) L2a|LINE|L2 1109 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 166-17 chr12 8499355 8499522 + 1.25 NA Intergenic Intergenic -14065 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 141.25-32 chr14 48395831 48396039 + 1.25 NA Intergenic Intergenic -600921 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 191.75-37 chr6 57033088 57033370 + 1.25 NA Intergenic Intergenic -13303 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 135.75-50 chr2 114049744 114049864 + 1.25 NA Intergenic L4_C_Mam|LINE|RTE-X -69820 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 258.5-24 chr8 139933456 139933801 + 1.25 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 166907 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 309.25-7 chr2 14521074 14521420 + 1.25 NA Intergenic Intergenic -111470 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 229-17 chr2 56499377 56499628 + 1.25 NA Intergenic Intergenic -313732 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 267-6 chr13 100057260 100057653 + 1.25 NA Intergenic L1MC5|LINE|L1 31487 NR_132422 105370333 Hs.186291 NR_132422 ENSG00000274605 LOC105370333 - uncharacterized LOC105370333 ncRNA 284.25-7 chr16 8145240 8145637 + 1.25 NA Intergenic L1MA9|LINE|L1 444400 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 148.5-61 chr3 106617367 106617530 + 1.25 NA Intergenic Intergenic 623190 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 164 chr1 96190508 96190663 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 183540 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 218.75-13 chr13 78871783 78871969 + 1.25 NA Intergenic Intergenic -31826 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 170.75-30 chr17 74770977 74771150 + 1.25 NA non-coding (NR_130954, exon 6 of 6) non-coding (NR_130954, exon 6 of 6) 5282 NR_130954 26151 Hs.144058 NM_015654 ENSG00000109065 NAT9 EBSP, hNATL N-acetyltransferase 9 (putative) protein-coding 181-43 chr7 3155572 3155735 + 1.25 NA intron (NR_126024, intron 2 of 3) L1MC5|LINE|L1 2920 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 160.25-42 chr4 46988512 46988648 + 1.25 NA intron (NM_001204267, intron 2 of 7) intron (NM_001204267, intron 2 of 7) 5001 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 177.75-59 chr8 80481587 80481831 + 1.25 NA Intergenic MIRc|SINE|MIR -3884 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 200.25-51 chr9 80257738 80257969 + 1.25 NA Intergenic L1ME3A|LINE|L1 282830 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 158.5-102 chr8 112485580 112485811 + 1.25 NA intron (NM_001363185, intron 29 of 66) intron (NM_001363185, intron 29 of 66) -157798 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 122.5-95 chr8 118245650 118245762 + 1.25 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -133887 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 292.75-8 chr20 59838289 59838710 + 1.25 NA intron (NM_080672, intron 9 of 12) intron (NM_080672, intron 9 of 12) 95138 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 183.25-23 chr2 100310874 100311037 + 1.25 NA intron (NM_198461, intron 1 of 11) Cheshire|DNA|hAT-Charlie 11778 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 216-17 chr16 67449245 67449653 + 1.25 NA intron (NM_004691, intron 2 of 7) intron (NM_004691, intron 2 of 7) 18328 NM_000196 3291 Hs.1376 NM_000196 ENSG00000176387 HSD11B2 AME|AME1|HSD11K|HSD2|SDR9C3 hydroxysteroid 11-beta dehydrogenase 2 protein-coding 183-2 chr1 95321854 95322104 + 1.25 NA Intergenic Intergenic -3716 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 225.25-4 chr13 103104898 103105211 + 1.25 NA Intergenic Charlie1|DNA|hAT-Charlie -38637 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 151.5-64 chr5 53036500 53036657 + 1.25 NA intron (NR_073106, intron 2 of 29) L2a|LINE|L2 47226 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 172.25-69 chr7 19662479 19662677 + 1.25 NA Intergenic L1MB5|LINE|L1 42858 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 162.25-11 chr14 58861361 58861546 + 1.25 NA intron (NR_110547, intron 1 of 5) MLT1G1-int|LTR|ERVL-MaLR 33165 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 205.25-42 chr7 96439764 96440173 + 1.25 NA Intergenic L2a|LINE|L2 63555 NR_163948 134.5-74 chr5 34821306 34821445 + 1.25 NA intron (NM_015577, intron 13 of 17) L2|LINE|L2 -17789 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 186.75-21 chr17 64116179 64116405 + 1.25 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 13852 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 154.25-48 chr3 189745173 189745371 + 1.25 NA intron (NM_003722, intron 3 of 13) L1MA4A|LINE|L1 -44387 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 193.75-26 chr2 159554662 159554975 + 1.25 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -60476 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 269-17 chr7 115068310 115068640 + 1.25 NA Intergenic L1MA9|LINE|L1 -10483 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 169.75-57 chr6 65741840 65742043 + 1.25 NA Intergenic Intergenic -34715 NM_001142800 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 235 chr1 166535859 166536163 + 1.25 NA Intergenic MER4-int|LTR|ERV1 -45972 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 235.75-19 chr4 34069263 34069571 + 1.25 NA Intergenic LTR108b_Mam|LTR|ERVL -29524 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 266.75-5 chr3 110406422 110406664 + 1.25 NA Intergenic MIRb|SINE|MIR 663416 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 292.25-6 chr2 115565172 115565609 + 1.25 NA intron (NM_001321912, intron 6 of 25) L1MC4|LINE|L1 221575 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 234.75-26 chr21 33066240 33066459 + 1.25 NA Intergenic Intergenic -3792 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 179-38 chr21 20594867 20595113 + 1.25 NA Intergenic MER34|LTR|ERV1 208118 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 169.25-7 chr10 88178901 88179102 + 1.25 NA Intergenic L2a|LINE|L2 315376 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 139.25-21 chr12 74320478 74320589 + 1.25 NA Intergenic Intergenic -27902 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 161.5-9 chr1 237086453 237086621 + 1.25 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 44353 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 120-14 chr1 202815234 202815340 + 1.25 NA Intergenic AluSz6|SINE|Alu 4341 NR_046326 100506696 Hs.23459 NR_046325 ENSG00000228288 PCAT6 KDM5B-AS1|KDM5BAS1|PCAN-R1|ncRNA-a2|onco-lncRNA-96 prostate cancer associated transcript 6 ncRNA 360-3 chr11 134752684 134753021 + 1.25 NA intron (NR_147836, intron 1 of 1) intron (NR_147836, intron 1 of 1) 16907 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 191-31 chr22 27456948 27457242 + 1.25 NA Intergenic L2c|LINE|L2 146444 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 228.5-10 chr13 70524508 70524799 + 1.25 NA Intergenic Intergenic -416160 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 183.5-81 chr9 95502666 95502898 + 1.25 NA intron (NM_000264, intron 2 of 23) intron (NM_000264, intron 2 of 23) 4417 NM_001083607 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 113.75-116 chr9 95422594 95422698 + 1.25 NA Intergenic L1MC4|LINE|L1 -40963 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 119-43 chr2 191108750 191108906 + 1.25 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 42166 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 330.75-3 chr12 85028898 85029394 + 1.25 NA intron (NM_001100917, intron 3 of 8) L2a|LINE|L2 7131 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 162-57 chr7 6556417 6556648 + 1.25 NA Intergenic Intergenic -5096 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 161-30 chr17 67786528 67786790 + 1.25 NA Intergenic AluSq4|SINE|Alu -38844 NM_182641 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 176.75-11 chr13 28592687 28592855 + 1.25 NA Intergenic L2-3_Crp|LINE|L2 -66359 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 184.75-25 chr15 58213560 58213970 + 1.25 NA Intergenic MER102c|DNA|hAT-Charlie 75384 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 219.75-40 chr7 44605338 44605690 + 1.25 NA Intergenic AluJo|SINE|Alu -1113 NM_001003941 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 167.75-6 chr1 113908601 113908906 + 1.25 NA intron (NM_001319946, intron 2 of 2) intron (NM_001319946, intron 2 of 2) 3427 NM_001363691 64858 Hs.591412 NM_022836 ENSG00000118655 DCLRE1B APOLLO|SNM1B|SNMIB DNA cross-link repair 1B protein-coding 212-42 chr8 22955709 22956132 + 1.25 NA Intergenic L2c|LINE|L2 -14843 NM_001363233 157310 Hs.491242 NM_144962 ENSG00000134020 PEBP4 CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4 phosphatidylethanolamine binding protein 4 protein-coding 169.75-68 chrX 96085194 96085335 + 1.25 NA Intergenic L1PA12|LINE|L1 252638 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 144.5 chr1 27895413 27895548 + 1.25 NA intron (NM_002946, intron 6 of 8) AluY|SINE|Alu 19095 NM_002946 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 248.25-22 chr3 22102633 22102983 + 1.25 NA Intergenic Intergenic 145669 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 132.5-109 chr8 19207704 19207860 + 1.25 NA intron (NR_038919, intron 3 of 4) intron (NR_038919, intron 3 of 4) 37740 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 126.75-18 chr12 77922462 77922617 + 1.25 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 91645 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 170.5-49 chr3 27424434 27424639 + 1.25 NA intron (NM_001258380, intron 6 of 23) intron (NM_001258380, intron 6 of 23) 32242 NM_001258380 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 188.25-17 chr18 2561077 2561261 + 1.25 NA intron (NM_022840, intron 3 of 8) intron (NM_022840, intron 3 of 8) 10336 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 191-11 chr12 41752748 41752917 + 1.25 NA Intergenic L1MA6|LINE|L1 -11357 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 269-2 chr1 191789985 191790383 + 1.25 NA Intergenic Intergenic -368278 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 256.25-10 chr3 19008392 19008823 + 1.25 NA Intergenic Intergenic -139903 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 143.25-55 chr4 78027434 78027628 + 1.25 NA Intergenic Intergenic -29792 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 211.25-22 chr20 31634850 31635100 + 1.25 NA Intergenic Intergenic -2937 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 261.25 chr11 4872568 4872862 + 1.25 NA Intergenic Intergenic -8985 NM_001004759 401665 NM_001004759 ENSG00000176900 OR51T1 OR11-26 olfactory receptor family 51 subfamily T member 1 protein-coding 247.25-12 chr2 57946927 57947490 + 1.25 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 39557 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 199.75-46 chrX 78418972 78419291 + 1.25 NA Intergenic L1MB2|LINE|L1 -91440 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 191.25-49 chr4 85859369 85859598 + 1.25 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 31546 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 116-13 chr11 34014223 34014335 + 1.25 NA Intergenic Intergenic -37452 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 150-49 chr3 34621630 34621859 + 1.25 NA Intergenic L1MB4|LINE|L1 772279 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 332.5-3 chr10 114421367 114421744 + 1.25 NA Intergenic L1ME1|LINE|L1 -16777 NM_001351073 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 237.75-32 chr3 25635518 25635887 + 1.25 NA intron (NM_001330700, intron 7 of 35) L1MCb|LINE|L1 28670 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 199.25-10 chr12 106450839 106451055 + 1.25 NA intron (NM_001160708, intron 19 of 27) L1ME1|LINE|L1 92865 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 209.75-35 chr5 128885380 128885684 + 1.25 NA Intergenic Intergenic -79595 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 316.25-4 chr3 7377047 7377375 + 1.25 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 158073 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 203.75-26 chr2 225981219 225981518 + 1.25 NA Intergenic L1MB7|LINE|L1 -161426 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 152-64 chr8 108652275 108652495 + 1.25 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 135209 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 153.5-76 chr5 26381691 26381845 + 1.25 NA Intergenic MER65A|LTR|ERV1 656818 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 183.25-4 chr10 54060032 54060283 + 1.25 NA intron (NM_001354411, intron 19 of 34) intron (NM_001354411, intron 19 of 34) -426073 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 169-47 chr7 52484823 52485196 + 1.25 NA Intergenic L1M3|LINE|L1 -550624 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 143-17 chr12 54547215 54547430 + 1.25 NA 3' UTR (NM_005337, exon 31 of 31) 3' UTR (NM_005337, exon 31 of 31) -2071 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 169.5-12 chr11 33669884 33670128 + 1.25 NA 3' UTR (NM_012194, exon 21 of 21) 3' UTR (NM_012194, exon 21 of 21) 30734 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 140.5-11 chr11 65257179 65257360 + 1.25 NA Intergenic L1M5|LINE|L1 -4693 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 352-2 chr14 73900074 73900681 + 1.25 NA intron (NR_040251, intron 5 of 11) AluSx|SINE|Alu 13518 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 244.25-15 chr2 120000408 120000622 + 1.25 NA Intergenic L1M4|LINE|L1 -12562 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 119.5-49 chr17 7384815 7384924 + 1.25 NA intron (NM_003985, intron 7 of 12).2 L2b|LINE|L2 3780 NM_001251902 8711 Hs.203420 NM_003985 ENSG00000174292 TNK1 - tyrosine kinase non receptor 1 protein-coding 238.5-32 chr6 50744445 50744728 + 1.25 NA intron (NM_172238, intron 5 of 7) intron (NM_172238, intron 5 of 7) 31042 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 208.75-13 chr15 62669206 62669485 + 1.25 NA intron (NM_015059, intron 6 of 55) intron (NM_015059, intron 6 of 55) 22034 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 133.25-57 chr3 150668856 150669064 + 1.25 NA intron (NM_001308234, intron 12 of 13) intron (NM_001308234, intron 12 of 13) -34604 NR_121675 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 163.5-85 chr7 96443826 96444043 + 1.25 NA Intergenic MER45B|DNA|hAT-Tip100 59589 NR_163948 260.75-7 chr18 2002711 2003110 + 1.25 NA Intergenic LTR9D|LTR|ERV1 568595 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 164.5-38 chr2 102749663 102749810 + 1.25 NA intron (NM_001321346, intron 1 of 3) intron (NM_001321346, intron 1 of 3) -12295 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 176-7 chr10 71769105 71769302 + 1.25 NA intron (NM_022153, intron 1 of 6) MER113|DNA|hAT-Charlie 4317 NM_022153 64115 Hs.47382 NM_022153 ENSG00000107738 VSIR B7-H5|B7H5|C10orf54|DD1alpha|Dies1|GI24|PD-1H|PP2135|SISP1|VISTA V-set immunoregulatory receptor protein-coding 196.75-45 chr8 127813221 127813418 + 1.25 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 17357 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 220.25-19 chr2 38231219 38231475 + 1.25 NA Intergenic Intergenic 100242 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 182-10 chr11 33863198 33863443 + 1.25 NA intron (NM_001142315, intron 3 of 3) intron (NM_001142315, intron 3 of 3) 6558 NM_001142315 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 166.25-2 chr1 39796991 39797357 + 1.25 NA Intergenic L1MB3|LINE|L1 8198 NR_135805 101929536 Hs.552820 NR_135805 ENSG00000261798 LOC101929536 - uncharacterized LOC101929536 ncRNA 199.75-44 chr9 104281816 104281987 + 1.25 NA intron (NR_135141, intron 2 of 3) intron (NR_135141, intron 2 of 3) 11672 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 275.5-34 chr9 36894608 36894969 + 1.25 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -1257 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 178.5-55 chr4 60480100 60480323 + 1.25 NA Intergenic Intergenic -442408 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 170-25 chr2 227828316 227828530 + 1.25 NA Intergenic Intergenic 14581 NM_001130046 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 204.5-73 chr9 102042084 102042393 + 1.25 NA Intergenic Intergenic -303658 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 168.25-41 chr3 157842564 157842839 + 1.25 NA Intergenic Intergenic 263462 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 229.25-11 chr2 137423420 137423694 + 1.25 NA intron (NM_001316349, intron 14 of 27) L1MB8|LINE|L1 504375 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 291.75-12 chr2 232775035 232775461 + 1.25 NA intron (NM_002242, intron 1 of 2) MIRc|SINE|MIR 1317 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 245.25-11 chr15 81183151 81183413 + 1.25 NA Intergenic Intergenic -13597 NM_172217 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 229.25-27 chr8 72487482 72487725 + 1.25 NA Intergenic L1PA17|LINE|L1 -49622 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 228.75-28 chr22 38881658 38881965 + 1.25 NA Intergenic Intergenic -9595 NM_014292 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 141.5-31 chr14 56284904 56285039 + 1.25 NA intron (NM_021255, intron 3 of 5) L2a|LINE|L2 166560 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 453 chr17 59780950 59781481 + 1.25 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -60051 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 257.75-7 chr12 46592668 46592901 + 1.25 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 208677 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 321.25-4 chr18 13829152 13829681 + 1.25 NA Intergenic Intergenic 5267 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 194.75-35 chr4 161169442 161169668 + 1.25 NA Intergenic L1M4a2|LINE|L1 -853178 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 127.75-71 chr4 174999680 174999796 + 1.25 NA Intergenic L1PA13|LINE|L1 81380 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 163.5-93 chr8 114489776 114489968 + 1.25 NA Intergenic Intergenic -1052933 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 199.5-5 chr10 66178974 66179201 + 1.25 NA intron (NM_001127384, intron 13 of 17) L1MD1|LINE|L1 607662 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 289-8 chr2 24706409 24706772 + 1.25 NA exon (NM_001362954, exon 13 of 24) exon (NM_001362954, exon 13 of 24) -86525 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 190-10 chr12 20610474 20610660 + 1.25 NA intron (NM_001244683, intron 1 of 14) L1MA9|LINE|L1 38703 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 144.25-12 chr10 97423051 97423175 + 1.25 NA intron (NR_157582, intron 1 of 1) intron (NR_157582, intron 1 of 1) 2944 NR_157582 644215 NR_157582 LOC644215 - uncharacterized LOC644215 ncRNA 205-21 chr2 51059395 51059802 + 1.25 NA intron (NR_135237, intron 2 of 10) L1MB5|LINE|L1 26997 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 143.5-40 chr18 11356647 11356840 + 1.25 NA Intergenic L1MA9|LINE|L1 -97735 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 252-18 chr21 16762796 16763153 + 1.25 NA Intergenic L1MA3|LINE|L1 172737 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 267.25-8 chr21 28550290 28550728 + 1.25 NA Intergenic Intergenic 11191 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 220-35 chr8 84870028 84870307 + 1.25 NA intron (NM_001287244, intron 5 of 7) (TTTTTAA)n|Simple_repeat|Simple_repeat 164240 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 198-45 chr6 125056609 125056848 + 1.25 NA intron (NR_136734, intron 3 of 6) intron (NR_136734, intron 3 of 6) 73360 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 150.25-21 chr14 24477081 24477257 + 1.25 NA intron (NR_110032, intron 2 of 2) intron (NR_110032, intron 2 of 2) 31096 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 260.25-23 chr7 78692395 78692704 + 1.25 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -316439 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 167-2 chr1 218293982 218294265 + 1.25 NA intron (NM_016052, intron 1 of 4) MER21B|LTR|ERVL 8830 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 144.5-9 chr1 236430027 236430224 + 1.25 NA intron (NM_080738, intron 4 of 5) intron (NM_080738, intron 4 of 5) 34712 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 266.5-19 chr5 5875244 5875606 + 1.25 NA Intergenic Intergenic 452748 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 213.25-38 chrX 54206747 54207044 + 1.25 NA intron (NM_001002838, intron 21 of 22) AluSx|SINE|Alu -23641 NM_198456 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 201-24 chr2 85358979 85359194 + 1.25 NA intron (NR_138132, intron 4 of 12) L1ME4b|LINE|L1 4317 NM_001135021 84173 Hs.269990 NM_032213 ENSG00000115459 ELMOD3 DFNB88|LST3|RBED1|RBM29 ELMO domain containing 3 protein-coding 145.25-16 chr11 20376810 20377030 + 1.25 NA intron (NM_001098521, intron 4 of 5) intron (NM_001098521, intron 4 of 5) -10610 NM_001145166 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 187.25-23 chr16 68931547 68931743 + 1.25 NA intron (NM_024562, intron 14 of 17) L1MB8|LINE|L1 88114 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 116.5-73 chr20 46090304 46090464 + 1.25 NA promoter-TSS (NM_001348151) promoter-TSS (NM_001348151) -422 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 313.5-5 chr17 29805957 29806233 + 1.25 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -44663 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 301-17 chr22 27364688 27365131 + 1.25 NA Intergenic L1MC1|LINE|L1 54258 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 177.5-61 chr7 37402137 37402333 + 1.25 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 46717 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 200.25-36 chr4 70395408 70395726 + 1.25 NA Intergenic Intergenic -2315 NR_126503 58503 Hs.661425 NM_021225 ENSG00000171199 OPRPN BPLP|PRL1|PROL1|opiorphin opiorphin prepropeptide protein-coding 127-56 chr22 28503519 28503697 + 1.25 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR 43739 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 180.75-22 chr14 39174248 39174614 + 1.25 NA promoter-TSS (NM_002687) promoter-TSS (NM_002687) -823 NM_002687 5411 Hs.409965 NM_002687 ENSG00000100941 PNN DRS|DRSP|SDK3|memA pinin, desmosome associated protein protein-coding 249.25-18 chr4 37715448 37715689 + 1.25 NA Intergenic MIR|SINE|MIR -29192 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 300.5 chr1 230398167 230398682 + 1.25 NA intron (NM_001258311, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 27908 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 182.75-18 chr2 135190925 135191150 + 1.25 NA Intergenic L1MB3|LINE|L1 54409 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 184.25-2 chr1 151680776 151681057 + 1.25 NA intron (NM_030918, intron 7 of 11) intron (NM_030918, intron 7 of 11) 35887 NM_001172648 11189 Hs.26047 NM_007185 ENSG00000159409 CELF3 BRUNOL1|CAGH4|ERDA4|ETR-1|TNRC4 CUGBP Elav-like family member 3 protein-coding 134-64 chr6 42997853 42998008 + 1.25 NA intron (NM_006245, intron 2 of 15) AluSz6|SINE|Alu 13360 NM_180977 5528 Hs.533308 NM_006245 ENSG00000112640 PPP2R5D B56D|B56delta|MRD35 protein phosphatase 2 regulatory subunit B'delta protein-coding 156.75-62 chr3 106910698 106910876 + 1.25 NA Intergenic LTR16E1|LTR|ERVL 329851 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 163.75-10 chr10 61708341 61708558 + 1.25 NA intron (NM_173554, intron 4 of 6) MLT1A0|LTR|ERVL-MaLR 45488 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 171.25-27 chr2 143063693 143063953 + 1.25 NA Intergenic Intergenic -65596 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 208.5-22 chr14 64056192 64056416 + 1.25 NA intron (NM_015180, intron 49 of 114) intron (NM_015180, intron 49 of 114) 38821 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 334.25-11 chr7 47416769 47417157 + 1.25 NA intron (NM_022748, intron 10 of 30) intron (NM_022748, intron 10 of 30) 47840 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 298.5-10 chr16 19053717 19054196 + 1.25 NA intron (NR_136733, intron 13 of 14) FLAM_C|SINE|Alu 13527 NR_119382 102723385 Hs.569608 NR_119379 ENSG00000261465 LOC102723385 - uncharacterized LOC102723385 ncRNA 140.25-14 chr12 15042542 15042789 + 1.25 NA Intergenic L1M5|LINE|L1 40832 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 260-12 chr17 5183546 5183955 + 1.25 NA exon (NM_032530, exon 2 of 2) exon (NM_032530, exon 2 of 2) 8118 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 211.75-27 chr4 20659254 20659460 + 1.25 NA Intergenic Intergenic -36925 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 158.25-42 chr4 113499404 113499661 + 1.25 NA intron (NM_001221, intron 14 of 18) intron (NM_001221, intron 14 of 18) 206693 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 135.25 chr1 56724827 56724985 + 1.25 NA intron (NM_001004303, intron 16 of 19) MSTB1|LTR|ERVL-MaLR -79588 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 424.5-2 chr3 187375893 187376550 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 7836 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 219.5-31 chr3 121319466 121319693 + 1.25 NA intron (NM_001348343, intron 21 of 27) intron (NM_001348343, intron 21 of 27) 226409 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 178.25-23 chr2 17070312 17070569 + 1.25 NA Intergenic THE1B-int|LTR|ERVL-MaLR -404606 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 195.75-54 chr8 124755190 124755459 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR -26817 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 133-21 chr14 64784982 64785148 + 1.25 NA TTS (NR_107009) TTS (NR_107009) 621 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 179-49 chr5 123340261 123340515 + 1.25 NA Intergenic Intergenic 83204 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 152.75 chr1 93799422 93799684 + 1.25 NA intron (NM_001261408, intron 2 of 13) ERV24B_Prim-int|LTR|ERV1 -24170 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 221.25-15 chr2 112117006 112117218 + 1.25 NA 3' UTR (NM_032824, exon 19 of 19) 3' UTR (NM_032824, exon 19 of 19) -21273 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 159.5-10 chr1 235471706 235471845 + 1.25 NA intron (NM_152490, intron 5 of 11) AluSz|SINE|Alu 32677 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 184-28 chr3 6224724 6224903 + 1.25 NA Intergenic Intergenic 580636 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 251.5-30 chr7 30467936 30468282 + 1.25 NA intron (NM_006092, intron 1 of 13) intron (NM_006092, intron 1 of 13) 10675 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 248.25-2 chr10 41888732 41889124 + 1.25 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 479117 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 174.75-5 chr10 5039173 5039454 + 1.25 NA Intergenic HERVK13-int|LTR|ERVK -9453 NM_001253908 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 132-15 chr11 16997036 16997147 + 1.25 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 17323 NM_175058 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 205-4 chr1 97212696 97212971 + 1.25 NA intron (NM_000110, intron 19 of 22) MIR|SINE|MIR 116910 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 252.75-12 chr2 67548301 67548567 + 1.25 NA Intergenic Intergenic 151101 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 247.25-24 chr4 74203178 74203655 + 1.25 NA intron (NM_001144978, intron 5 of 7) MSTA|LTR|ERVL-MaLR 45298 NM_001351331 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 328.75 chr18 4167520 4167926 + 1.25 NA intron (NM_001242761, intron 1 of 11) L1MDb|LINE|L1 -96879 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 217.25 chr1 104096299 104096525 + 1.25 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 23389 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 226.25-2 chr1 187129890 187130175 + 1.25 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 37190 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 130-52 chr3 99895713 99895863 + 1.25 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -19585 NM_001282794 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 209.25-42 chr6 144254699 144254926 + 1.25 NA Intergenic L1MB2|LINE|L1 -36925 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 192-31 chr20 44043277 44043554 + 1.25 NA intron (NM_001098797, intron 3 of 8) L1ME3Cz|LINE|L1 97519 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 278-25 chr7 100078881 100079248 + 1.25 NA intron (NM_001371212, intron 1 of 4) intron (NM_001371212, intron 1 of 4) 2659 NM_001278291 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 206.5-23 chr19 36516895 36517168 + 1.25 NA intron (NM_001166038, intron 2 of 2) HAL1|LINE|L1 11240 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 141.5-96 chr5 165825177 165825383 + 1.25 NA Intergenic L1MB3|LINE|L1 1101090 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 342.75-3 chr15 79582274 79582705 + 1.25 NA Intergenic L1MB2|LINE|L1 149973 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 115-70 chr6 165838470 165838725 + 1.25 NA Intergenic L1MB7|LINE|L1 -148954 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 315.75-8 chr5 136095856 136096197 + 1.25 NA Intergenic Intergenic -15428 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 253-7 chr15 57890890 57891236 + 1.25 NA Intergenic L2a|LINE|L2 122960 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 234.5-26 chr20 8448003 8448244 + 1.25 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 199419 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 259-30 chr8 100447323 100447652 + 1.25 NA Intergenic L1MB4|LINE|L1 64724 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 137-68 chr8 126616074 126616196 + 1.25 NA Intergenic MIRb|SINE|MIR -57657 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 191.5-12 chr11 83258424 83258615 + 1.25 NA TTS (NM_021825) TTS (NM_021825) 27888 NM_001286120 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 194-26 chr4 30631416 30631693 + 1.25 NA Intergenic LTR28B|LTR|ERV1 -88815 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 165.75-77 chr9 33986008 33986321 + 1.25 NA intron (NM_001370059, intron 6 of 28) AluSc8|SINE|Alu -33310 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 220.75-12 chr16 79652201 79652457 + 1.25 NA Intergenic Intergenic -51592 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 239-17 chr17 57799275 57799630 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger 50592 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 160-12 chr14 34014077 34014300 + 1.25 NA Intergenic Intergenic -63114 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 128.5-40 chr2 45846139 45846292 + 1.25 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 194540 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 281-17 chr3 60885115 60885520 + 1.25 NA intron (NM_001320900, intron 4 of 9) L1MA4|LINE|L1 -267447 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 185-21 chr2 130352678 130352878 + 1.25 NA Intergenic MIR|SINE|MIR -3278 NM_014369 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 154.75-2 chr1 188600800 188601023 + 1.25 NA Intergenic Intergenic 1157283 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 219.25-6 chr10 69103961 69104200 + 1.25 NA exon (NM_001321053, exon 4 of 4) exon (NM_001321053, exon 4 of 4) 15977 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 142.75-68 chr5 96499154 96499517 + 1.25 NA intron (NR_130776, intron 4 of 4) Tigger1|DNA|TcMar-Tigger -66087 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 223.5-15 chr11 18001745 18002086 + 1.25 NA intron (NR_104040, intron 4 of 11) L2c|LINE|L2 11132 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 133-64 chr8 15191676 15191835 + 1.25 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 46676 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 133.5-83 chr4 113720155 113720343 + 1.25 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 41489 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 229-6 chr10 21637376 21637589 + 1.25 NA intron (NM_001195626, intron 8 of 22) HERVL40-int|LTR|ERVL 103310 NM_004641 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 191-14 chr14 83235254 83235524 + 1.25 NA Intergenic MIRb|SINE|MIR 592757 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 182.25-13 chr14 92591216 92591384 + 1.25 NA intron (NM_024832, intron 3 of 9) L1MCa|LINE|L1 15066 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 288.5-9 chr2 89774700 89775070 + 1.25 NA Intergenic Intergenic -136978 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 124.5-104 chr7 152407149 152407437 + 1.25 NA intron (NM_170606, intron 1 of 58) intron (NM_170606, intron 1 of 58) 28710 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 135.75-35 chr15 62771201 62771383 + 1.25 NA intron (NM_015059, intron 39 of 55) intron (NM_015059, intron 39 of 55) -52665 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 267.75-2 chr10 76425086 76425575 + 1.25 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -462714 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 178-14 chr11 130052985 130053248 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR -16778 NM_001142276 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 141.5-94 chr5 105294235 105294367 + 1.25 NA Intergenic MER4D1|LTR|ERV1 194827 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 198.25-48 chr9 20066322 20066480 + 1.25 NA Intergenic Intergenic -279382 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 398.5-4 chr6 140593889 140594399 + 1.25 NA Intergenic THE1B-int|LTR|ERVL-MaLR -89670 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 228.5-37 chr8 139136793 139137098 + 1.25 NA Intergenic Intergenic -222904 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 135.5-50 chr2 72223415 72223562 + 1.25 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -75626 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 224.75-10 chr16 75768573 75768779 + 1.25 NA Intergenic L1M4|LINE|L1 -42186 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 127.25-45 chr2 23510733 23510875 + 1.25 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 125625 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 154-32 chr19 51546955 51547130 + 1.25 NA Intergenic AluJo|SINE|Alu -15372 NM_198846 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 313.5-16 chr6 39020849 39021255 + 1.25 NA intron (NM_001371, intron 90 of 91) L1PA8|LINE|L1 -27729 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 130.75-70 chr7 26916641 26916867 + 1.25 NA Intergenic Intergenic -52164 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 188.5-32 chr2 225754388 225754612 + 1.25 NA Intergenic L1M5|LINE|L1 353614 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 121.5-85 chr4 19869725 19869822 + 1.25 NA Intergenic L1MDa|LINE|L1 -382132 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 267.75-14 chr5 132062417 132062807 + 1.25 NA intron (NM_000588, intron 4 of 4) L2a|LINE|L2 1957 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 212-22 chr19 38666947 38667213 + 1.25 NA intron (NM_001322033, intron 1 of 20).2 intron (NM_001322033, intron 1 of 20).2 19431 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 141-80 chr9 98069310 98069644 + 1.25 NA intron (NM_018946, intron 2 of 5) AluSg4|SINE|Alu 12745 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 180-33 chr18 60451373 60451624 + 1.25 NA Intergenic Intergenic -78723 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 157.75-16 chr11 36233181 36233372 + 1.25 NA Intergenic Intergenic 56148 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 234.75-43 chr8 106060536 106060881 + 1.25 NA promoter-TSS (NR_125797) promoter-TSS (NR_125797) -205 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 186.75-33 chr3 1320158 1320383 + 1.25 NA intron (NM_001349359, intron 6 of 20) Tigger18a|DNA|TcMar-Tigger 227246 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 161.25-17 chr12 63142581 63142738 + 1.25 NA TTS (NM_000706) TTS (NM_000706) 10151 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 173.25-15 chr14 46143277 46143474 + 1.25 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 79216 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 114-76 chr6 99782543 99782689 + 1.25 NA Intergenic Intergenic 175842 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 166.75-19 chr14 61993546 61993736 + 1.25 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 65946 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 281.5-12 chr3 100373505 100373975 + 1.25 NA intron (NM_014820, intron 7 of 11) intron (NM_014820, intron 7 of 11) 27349 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 308.75 chr1 224557746 224558201 + 1.25 NA intron (NR_136295, intron 2 of 7) MIRb|SINE|MIR -58344 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 174.75-38 chr4 48999481 48999737 + 1.25 NA intron (NM_001286791, intron 6 of 15) L1PB4|LINE|L1 12967 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 173.75-5 chr1 189613917 189614101 + 1.25 NA Intergenic Intergenic 862001 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 165.75-66 chr7 70744018 70744204 + 1.25 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -388033 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 227.5-33 chr3 31430839 31431156 + 1.25 NA Intergenic Intergenic -101928 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 170.75-59 chr5 103398200 103398401 + 1.25 NA Intergenic Intergenic 138876 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 129.5-64 chr3 104504142 104504257 + 1.25 NA Intergenic L1M1|LINE|L1 -862514 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 293.25-15 chr7 34388273 34388549 + 1.25 NA intron (NR_033665, intron 3 of 3) MER4D1|LTR|ERV1 -269807 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 213.5-49 chr8 25811910 25812203 + 1.25 NA Intergenic L1ME4b|LINE|L1 233357 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 164-33 chr20 9161018 9161263 + 1.25 NA intron (NM_001172646, intron 1 of 37) MIRb|SINE|MIR -56250 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 204.75-31 chr20 38762535 38762765 + 1.25 NA intron (NM_024855, intron 5 of 8) intron (NM_024855, intron 5 of 8) 14190 NM_024855 79913 Hs.371585 NM_024855 ENSG00000101442 ACTR5 Arp5|INO80M actin related protein 5 protein-coding 339.75-9 chr18 5024086 5024437 + 1.25 NA Intergenic Intergenic -56921 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 171.25-57 chr8 84311184 84311548 + 1.25 NA intron (NM_001354320, intron 2 of 9) L1MC|LINE|L1 -104118 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 124.75-88 chrX 36912660 36912850 + 1.25 NA Intergenic L1MA8|LINE|L1 -95604 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 145.25-18 chr11 41325035 41325239 + 1.25 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 134499 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 347.5-6 chr14 53103658 53104032 + 1.25 NA exon (NM_001160147, exon 2 of 13) exon (NM_001160147, exon 2 of 13) 49478 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 247.75-2 chr11 106822648 106823065 + 1.25 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 195620 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 121.75-36 chr2 50858183 50858393 + 1.25 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -162026 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 338.25-4 chr2 24649296 24649761 + 1.25 NA intron (NM_001362950, intron 4 of 23) intron (NM_001362950, intron 4 of 23) 65051 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 187.5-41 chr2 139727709 139727909 + 1.25 NA Intergenic MER4-int|LTR|ERV1 830485 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 219.5-43 chr5 151119732 151119985 + 1.25 NA intron (NM_001193544, intron 16 of 24) intron (NM_001193544, intron 16 of 24) 21826 NM_001193544 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 154-59 chr6 73156644 73156884 + 1.25 NA intron (NM_001160132, intron 10 of 13) intron (NM_001160132, intron 10 of 13) -13250 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 132.25-33 chr15 88027609 88027750 + 1.25 NA intron (NM_001007156, intron 14 of 15) AluY|SINE|Alu -81411 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 146.5-55 chr20 46001228 46001383 + 1.25 NA Intergenic Intergenic -7603 NM_004994 4318 Hs.297413 NM_004994 ENSG00000100985 MMP9 CLG4B|GELB|MANDP2|MMP-9 matrix metallopeptidase 9 protein-coding 177.75-70 chrX 53387498 53387748 + 1.25 NA intron (NM_001281463, intron 20 of 25) L1MC5|LINE|L1 18142 NR_106916 102465516 NR_106916 ENSG00000278204 MIR6857 hsa-mir-6857 microRNA 6857 ncRNA 161.75-3 chr10 65719409 65719630 + 1.25 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 148094 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 172.25-2 chr1 197467654 197467938 + 1.25 NA intron (NR_047564, intron 11 of 11) intron (NR_047564, intron 11 of 11) 199544 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 143.5-96 chr8 18832767 18832994 + 1.25 NA intron (NM_015310, intron 4 of 15) THE1B|LTR|ERVL-MaLR -24013 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 119.25-5 chr1 204393555 204393839 + 1.25 NA Intergenic L1ME1|LINE|L1 18120 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 287.5-5 chr11 120755750 120756224 + 1.25 NA intron (NM_001282470, intron 2 of 19) MIR|SINE|MIR 63128 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 268.75-31 chr9 122512953 122513264 + 1.25 NA Intergenic Intergenic 2306 NM_054107 26740 Hs.460145 NM_054107 ENSG00000197233 OR1J2 HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044 olfactory receptor family 1 subfamily J member 2 protein-coding 212.75-16 chr2 182369238 182369416 + 1.25 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 57721 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 313.5-14 chr5 45463155 45463517 + 1.25 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 233044 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 120-31 chr14 63226673 63226884 + 1.25 NA intron (NM_020663, intron 1 of 4) L1M7|LINE|L1 22335 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 156.5-10 chr11 115694315 115694478 + 1.25 NA Intergenic L1MB2|LINE|L1 40366 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 127.5-21 chr11 18092024 18092170 + 1.25 NA intron (NM_138421, intron 4 of 11) intron (NM_138421, intron 4 of 11) 13985 NM_138421 113174 Hs.591998 NM_138421 ENSG00000166788 SAAL1 SPACIA1 serum amyloid A like 1 protein-coding 357.75-9 chr4 55559448 55560024 + 1.25 NA intron (NM_152401, intron 5 of 5) L1MB3|LINE|L1 -12827 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 127.75-36 chr16 20913131 20913261 + 1.25 NA intron (NR_161427, intron 2 of 2) L1ME3C|LINE|L1 11934 NM_001369645 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 233.5-54 chr8 82011670 82011947 + 1.25 NA Intergenic Intergenic -169522 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 145.75-15 chr14 76645183 76645347 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -116203 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 216-26 chr21 44716174 44716471 + 1.25 NA Intergenic Intergenic -4750 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 249.5-7 chr16 76379306 76379615 + 1.25 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 69608 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 141.75-66 chr5 38533160 38533365 + 1.25 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 23384 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 171.25-55 chr8 54147685 54147925 + 1.25 NA 3' UTR (NM_014175, exon 5 of 5) 3' UTR (NM_014175, exon 5 of 5) 12564 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 187.5-49 chr3 23264822 23264995 + 1.25 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 61581 NM_001370228 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 200-46 chr7 98363532 98363778 + 1.25 NA intron (NM_018842, intron 1 of 13) intron (NM_018842, intron 1 of 13) 37435 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 282-20 chr4 44132118 44132506 + 1.25 NA Intergenic L2c|LINE|L2 115250 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 117.75-65 chr5 53333914 53334039 + 1.25 NA Intergenic Intergenic -146653 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 174-35 chr20 33998123 33998392 + 1.25 NA intron (NM_007367, intron 1 of 8) L2b|LINE|L2 -3890 NR_109885 101926888 Hs.405849 NR_109885 ENSG00000285230 RALY-AS1 - RALY antisense RNA 1 ncRNA 293.5-21 chr7 115098544 115098904 + 1.25 NA intron (NR_120521, intron 1 of 3) (ATATTAG)n|Simple_repeat|Simple_repeat 19766 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 155.75-23 chr19 51445877 51446037 + 1.25 NA Intergenic L1P1|LINE|L1 12497 NM_014442 27181 Hs.447899 NM_014442 ENSG00000105366 SIGLEC8 SAF2|SIGLEC-8|SIGLEC8L sialic acid binding Ig like lectin 8 protein-coding 184.5-68 chr6 39401665 39401928 + 1.25 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 29594 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 314.25-12 chr9 83005440 83005724 + 1.25 NA intron (NM_152573, intron 7 of 16) intron (NM_152573, intron 7 of 16) 57560 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 250-6 chr12 8060064 8060440 + 1.25 NA intron (NM_004054, intron 1 of 1) intron (NM_004054, intron 1 of 1) 6107 NM_001326477 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 230.75-23 chr6 121467557 121467966 + 1.25 NA Intergenic Intergenic 32115 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 180.25-3 chr1 165849453 165849643 + 1.25 NA intron (NM_012474, intron 1 of 6) intron (NM_012474, intron 1 of 6) 21934 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 178.75-7 chr12 125413598 125413856 + 1.25 NA intron (NM_052907, intron 2 of 8) L1MB5|LINE|L1 87111 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 218.5-38 chr4 103730695 103731116 + 1.25 NA Intergenic L1M4|LINE|L1 -10920 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 117.25-22 chr11 96165002 96165100 + 1.25 NA intron (NM_032427, intron 1 of 4) L1ME4a|LINE|L1 -176387 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 133-67 chr8 115477324 115477635 + 1.25 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 190534 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 144-47 chr3 136908053 136908197 + 1.25 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) -22377 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 124-48 chr4 152762471 152762671 + 1.25 NA Intergenic Intergenic 17159 NM_145720 201798 Hs.301243 NM_145720 ENSG00000169989 TIGD4 - tigger transposable element derived 4 protein-coding 250.25-16 chr4 118124870 118125125 + 1.25 NA intron (NM_004784, intron 4 of 13) MER77B|LTR|ERVL 90511 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 282.25-2 chr10 10360534 10360830 + 1.25 NA Intergenic MIRb|SINE|MIR 101667 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 115.75-85 chr6 153778436 153778579 + 1.25 NA Intergenic Intergenic -231989 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 219.75-46 chr8 130730157 130730384 + 1.25 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -286596 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 298.25-12 chr4 112283810 112284241 + 1.25 NA intron (NM_052864, intron 1 of 1) intron (NM_052864, intron 1 of 1) 1879 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 236.5-21 chr17 61976971 61977353 + 1.25 NA intron (NM_005121, intron 16 of 29) L2a|LINE|L2 -49180 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 213.75-6 chr1 115737076 115737277 + 1.25 NA intron (NM_001232, intron 4 of 10) intron (NM_001232, intron 4 of 10) 31629 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 331-2 chr1 215488903 215489292 + 1.25 NA Intergenic Intergenic -78207 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 226.25-19 chr2 105321971 105322205 + 1.25 NA intron (NR_137328, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 7568 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 171.5-71 chr5 84154149 84154417 + 1.25 NA intron (NM_001278642, intron 3 of 9) MLT1H|LTR|ERVL-MaLR 230584 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 240.75-30 chr7 27498208 27498489 + 1.25 NA Intergenic Intergenic -117626 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 211.75-18 chr17 82373297 82373575 + 1.25 NA promoter-TSS (NM_018949) promoter-TSS (NM_018949) -841 NM_018949 2837 Hs.192720 NM_018949 ENSG00000181408 UTS2R GPR14|UR-2-R|UTR|UTR2 urotensin 2 receptor protein-coding 151.25-35 chr20 46436278 46436509 + 1.25 NA intron (NR_146919, intron 3 of 3) MER34|LTR|ERV1 21250 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 234.25-13 chr18 36394843 36395115 + 1.25 NA intron (NM_001281740, intron 3 of 28) HAL1M8|LINE|L1 97266 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 200.25-12 chr10 118667328 118667525 + 1.25 NA Intergenic MER65A|LTR|ERV1 -71778 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 229.75-19 chr3 55575802 55576087 + 1.25 NA intron (NM_015576, intron 16 of 16) MIRb|SINE|MIR 83525 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 370.25-4 chr12 38670629 38671014 + 1.25 NA intron (NM_153634, intron 18 of 19) intron (NM_153634, intron 18 of 19) 234770 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 169.75-8 chr10 106651312 106651470 + 1.25 NA intron (NM_001206569, intron 18 of 25) MER5A|DNA|hAT-Charlie 511226 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 279.25-2 chr1 238731413 238731636 + 1.25 NA Intergenic Intergenic -245507 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 164.75-13 chr11 67348604 67348962 + 1.25 NA intron (NR_024469, intron 2 of 3) intron (NR_024469, intron 2 of 3) 4763 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 276-10 chr2 75800858 75801294 + 1.25 NA Intergenic LTR78|LTR|ERV1 -90161 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 149.5-48 chr18 67971538 67971748 + 1.25 NA Intergenic L1PA15|LINE|L1 -156821 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 222.25-27 chr7 27990961 27991262 + 1.25 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -189346 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 315-3 chr14 38135380 38135892 + 1.25 NA Intergenic Intergenic -72268 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 175-53 chr6 121790620 121790799 + 1.25 NA Intergenic Intergenic 355063 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 147.75-18 chr13 93570178 93570497 + 1.25 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 288136 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 253.5-39 chr6 61977288 61977542 + 1.25 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 308810 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 276-15 chr3 118126912 118127230 + 1.25 NA Intergenic Intergenic -436146 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 130.75-51 chr3 68329560 68329919 + 1.25 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -170898 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 175.5-21 chr13 38850639 38850796 + 1.25 NA intron (NM_207361, intron 9 of 23) intron (NM_207361, intron 9 of 23) -23126 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 137.25-55 chr3 193760799 193760915 + 1.25 NA Intergenic Intergenic 83152 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 184.75-24 chr14 46348910 46349099 + 1.25 NA intron (NR_102702, intron 3 of 3) L3|LINE|CR1 -122355 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 163.5-58 chr3 138608153 138608399 + 1.25 NA promoter-TSS (NM_001033030) promoter-TSS (NM_001033030) -495 NM_001033031 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 139-41 chr21 19499213 19499380 + 1.25 NA Intergenic Intergenic 400459 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 156.75-22 chr13 25860860 25860985 + 1.25 NA intron (NM_016529, intron 32 of 36) intron (NM_016529, intron 32 of 36) 190138 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 132.5-119 chr9 104697936 104698084 + 1.25 NA Intergenic Intergenic 3588 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 118.25-103 chr7 101230434 101230604 + 1.25 NA Intergenic Intergenic 7283 NM_014343 24146 Hs.38738 NM_014343 ENSG00000106404 CLDN15 - claudin 15 protein-coding 191.75-46 chr9 84742051 84742365 + 1.25 NA intron (NM_001018064, intron 10 of 17) intron (NM_001018064, intron 10 of 17) 36307 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 217.5-20 chr2 160689521 160689732 + 1.25 NA Intergenic Intergenic -195819 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 133.75-65 chr5 37587947 37588098 + 1.25 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 208704 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 187.25-64 chr8 120481231 120481467 + 1.25 NA intron (NM_022045, intron 11 of 21) L1ME1|LINE|L1 35930 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 139.25-37 chr16 5199330 5199488 + 1.25 NA Intergenic Intergenic -101589 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 132.75-104 chr9 27668341 27668479 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -94544 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 180.5-75 chr6 41772149 41772395 + 1.25 NA intron (NM_006653, intron 5 of 6) intron (NM_006653, intron 5 of 6) 7628 NM_006653 10817 Hs.194208 NM_006653 ENSG00000137218 FRS3 FRS2-beta|FRS2B|FRS2beta|SNT-2|SNT2 fibroblast growth factor receptor substrate 3 protein-coding 132-23 chr15 34462935 34463258 + 1.25 NA Intergenic L1MC3|LINE|L1 -25288 NR_027409 23015 Hs.182982 NM_181077 ENSG00000175265 GOLGA8A GM88|GOLGA8B golgin A8 family member A protein-coding 202.25-11 chr14 58836319 58836531 + 1.25 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 8137 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 275.25-4 chr12 68112310 68112706 + 1.25 NA Intergenic Intergenic 47232 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 284-19 chr5 146080899 146081244 + 1.25 NA Intergenic AluSc8|SINE|Alu 24506 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 360-5 chr3 6412857 6413511 + 1.25 NA Intergenic Intergenic 392265 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 188-22 chr2 58902053 58902336 + 1.25 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -315514 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 186-15 chr14 45819289 45819587 + 1.25 NA Intergenic SATR1|Satellite|Satellite -103836 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 178.75-26 chr19 52241663 52241924 + 1.25 NA Intergenic Intergenic 19773 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 124-34 chr20 7043931 7044061 + 1.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR 210206 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 295.25-8 chr17 73909339 73909712 + 1.25 NA Intergenic Intergenic -80988 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 154-63 chr7 84202993 84203228 + 1.25 NA Intergenic Intergenic -8321 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 171-17 chr12 32741702 32741866 + 1.25 NA intron (NM_001330380, intron 17 of 18) Tigger3a|DNA|TcMar-Tigger 14113 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 158.5-36 chr15 37955079 37955248 + 1.25 NA intron (NR_163585, intron 12 of 13) L1MA2|LINE|L1 20521 NM_001370736 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 303 chr10 44638302 44638834 + 1.25 NA Intergenic L1MEg|LINE|L1 -253471 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 191.5-56 chr5 108887480 108887674 + 1.25 NA intron (NR_146155, intron 8 of 19) intron (NR_146155, intron 8 of 19) -37029 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 321.75-7 chr18 5793973 5794443 + 1.25 NA intron (NR_038839, intron 4 of 4) intron (NR_038839, intron 4 of 4) 45389 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 177.25-2 chr1 160054657 160054923 + 1.25 NA intron (NM_002241, intron 1 of 1) intron (NM_002241, intron 1 of 1) 15370 NM_002241 3766 Hs.408960 NM_002241 ENSG00000177807 KCNJ10 BIRK-10|KCNJ13-PEN|KIR1.2|KIR4.1|SESAME potassium voltage-gated channel subfamily J member 10 protein-coding 134.5-102 chr9 104341110 104341253 + 1.25 NA Intergenic Intergenic 70952 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 249.75-21 chr4 126384549 126384914 + 1.25 NA Intergenic Intergenic 877472 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 142.75-44 chr2 97842619 97842755 + 1.25 NA intron (NM_015348, intron 6 of 40) L2a|LINE|L2 108281 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 224.5-19 chr19 28154352 28154603 + 1.25 NA Intergenic L1PA16|LINE|L1 -360537 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 139-14 chr12 56580559 56580704 + 1.25 NA intron (NM_002898, intron 5 of 13) MIRc|SINE|MIR 49695 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 214.25-21 chr20 42502019 42502372 + 1.25 NA intron (NM_133170, intron 7 of 31) L1ME3E|LINE|L1 -183288 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 182.75-9 chr14 62359823 62360175 + 1.25 NA Intergenic MER89-int|LTR|ERV1 -220026 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 159.25-51 chr4 67049962 67050189 + 1.25 NA Intergenic Intergenic 371925 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 377.75-4 chr4 185191006 185191353 + 1.25 NA exon (NM_020827, exon 2 of 5) exon (NM_020827, exon 2 of 5) 12821 NM_020827 57587 Hs.535734 NM_020827 ENSG00000164323 CFAP97 KIAA1430|hmw cilia and flagella associated protein 97 protein-coding 216.75-27 chr3 16949732 16949982 + 1.25 NA intron (NM_015184, intron 1 of 5) L1ME3G|LINE|L1 16661 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 178.25-9 chr10 22205922 22206115 + 1.25 NA Intergenic Intergenic 3965 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 157.5-49 chr2 100037014 100037177 + 1.25 NA intron (NM_001025108, intron 2 of 23) L1ME4a|LINE|L1 68488 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 195.5-80 chr7 11527534 11527746 + 1.25 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 304558 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 193.75-31 chr21 21970112 21970340 + 1.25 NA Intergenic Intergenic 128233 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 199.5-28 chr2 126552157 126552380 + 1.25 NA Intergenic MLT2A1|LTR|ERVL -103667 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 254.25-16 chr4 47590538 47590855 + 1.25 NA intron (NM_020453, intron 22 of 22) MIRb|SINE|MIR -61973 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 169.75-58 chr6 113939765 113939984 + 1.25 NA non-coding (NR_073443, exon 14 of 14) non-coding (NR_073443, exon 14 of 14) -29827 NR_125845 101927768 Hs.129280 NR_125845 ENSG00000228624 HDAC2-AS2 - HDAC2 and HS3ST5 antisense RNA 2 ncRNA 135-63 chr6 36268636 36268780 + 1.25 NA intron (NM_173676, intron 1 of 7) intron (NM_173676, intron 1 of 7) -1752 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 134-62 chr5 137594454 137594620 + 1.25 NA Intergenic Intergenic 53112 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 221.5-5 chr1 234565475 234565856 + 1.25 NA Intergenic Intergenic -33886 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 181.75-47 chr9 102033677 102033923 + 1.25 NA Intergenic Intergenic -295220 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 254.5-18 chr3 186051503 186051724 + 1.25 NA intron (NM_004454, intron 12 of 12) intron (NM_004454, intron 12 of 12) 57476 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 128.75-36 chr18 69120844 69120954 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -279989 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 211.5-9 chr12 9880014 9880281 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL -1342 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 217.75-15 chr16 24553125 24553428 + 1.25 NA intron (NM_018703, intron 3 of 16) intron (NM_018703, intron 3 of 16) 13689 NM_032626 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 249.5-32 chr7 138616841 138617308 + 1.25 NA intron (NM_174959, intron 10 of 11) AluSx1|SINE|Alu 47150 NM_001331192 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 130.75-69 chr7 25671621 25671788 + 1.25 NA promoter-TSS (NR_157816) promoter-TSS (NR_157816) -973 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 194.5-69 chr7 95469153 95469442 + 1.25 NA Intergenic Intergenic -16604 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 120-75 chr5 136399246 136399381 + 1.25 NA Intergenic MIR|SINE|MIR -33837 NM_020389 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 178.25-49 chr5 63827060 63827222 + 1.25 NA Intergenic Intergenic 135151 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 179.25-49 chr7 89248263 89248457 + 1.25 NA intron (NM_181646, intron 2 of 3) L1PA16|LINE|L1 -452623 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 279.25-7 chr14 65662584 65662993 + 1.25 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 191686 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 144-80 chr9 119253849 119254049 + 1.25 NA intron (NM_014618, intron 2 of 7) intron (NM_014618, intron 2 of 7) 115486 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 153.5-88 chr7 73552896 73553060 + 1.25 NA intron (NM_001707, intron 1 of 5) AluJr|SINE|Alu 4258 NR_036682 9275 Hs.647051 NM_001707 ENSG00000106635 BCL7B - BAF chromatin remodeling complex subunit BCL7B protein-coding 144-5 chr1 240856334 240856525 + 1.25 NA intron (NM_001350116, intron 9 of 16) L2c|LINE|L2 -244274 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 203.25-5 chr10 51060604 51060810 + 1.25 NA intron (NM_001098512, intron 1 of 17) L1ME3|LINE|L1 7845 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 176.5-11 chr11 21639534 21639720 + 1.25 NA Intergenic L1MB8|LINE|L1 -553458 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 409.75-3 chr5 60669361 60670053 + 1.25 NA intron (NM_001145208, intron 2 of 9) intron (NM_001145208, intron 2 of 9) 30459 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 207-48 chr7 8006489 8006698 + 1.25 NA intron (NM_138426, intron 2 of 7) MER115|DNA|hAT-Tip100 37797 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 118.75-2 chr1 36848251 36848376 + 1.25 NA intron (NM_000831, intron 9 of 15) intron (NM_000831, intron 9 of 15) 186202 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 146.75-63 chr8 98911759 98911890 + 1.25 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 30786 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 174.5-47 chr20 34526011 34526261 + 1.25 NA intron (NM_001281728, intron 2 of 4) intron (NM_001281728, intron 2 of 4) 9752 NM_014183 83658 Hs.593920 NM_014183 ENSG00000125971 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein light chain roadblock-type 1 protein-coding 227.5-49 chr7 46622495 46622713 + 1.25 NA Intergenic Intergenic 74518 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 170.25-43 chr21 30223313 30223596 + 1.25 NA Intergenic Intergenic -7357 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 226.25-34 chr9 92588466 92588807 + 1.25 NA intron (NM_001286969, intron 4 of 6) intron (NM_001286969, intron 4 of 6) -11621 NM_001286971 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 178.25-68 chr9 27962833 27962990 + 1.25 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -389045 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 144.75-94 chr9 104141036 104141354 + 1.25 NA 3' UTR (NM_001042551, exon 25 of 25) 3' UTR (NM_001042551, exon 25 of 25) 46568 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 302.75-2 chr15 93669609 93669968 + 1.25 NA Intergenic L1ME3B|LINE|L1 -186772 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 161.25-60 chr4 173354311 173354556 + 1.25 NA Intergenic Intergenic -16521 NM_003864 8819 Hs.591715 NM_003864 ENSG00000164105 SAP30 - Sin3A associated protein 30 protein-coding 145-29 chr18 11357269 11357390 + 1.25 NA Intergenic L1MA9|LINE|L1 -97149 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 192.25-10 chr10 64533604 64533876 + 1.25 NA Intergenic L1ME4a|LINE|L1 -291788 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 198.75-52 chr9 32044532 32044754 + 1.25 NA Intergenic Intergenic -339960 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 159.25-3 chr1 246132519 246132733 + 1.25 NA intron (NM_022743, intron 5 of 11) L1M4|LINE|L1 284786 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 169.5-88 chr9 27895436 27895580 + 1.25 NA Intergenic Intergenic -321642 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 184.75-8 chr1 206634065 206634246 + 1.25 NA Intergenic Intergenic -1381 NM_003582 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 139-60 chr6 168733633 168733892 + 1.25 NA Intergenic Intergenic 230620 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 192-21 chr16 49778657 49778977 + 1.25 NA intron (NM_001271620, intron 2 of 7) intron (NM_001271620, intron 2 of 7) 43921 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 311-16 chr6 92900593 92901106 + 1.25 NA Intergenic Intergenic 518710 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 263.5-2 chr1 117023167 117023504 + 1.25 NA intron (NM_001256109, intron 7 of 9) MER102b|DNA|hAT-Charlie 21585 NM_004258 9398 Hs.654598 NM_004258 ENSG00000134256 CD101 EWI-101|IGSF2|V7 CD101 molecule protein-coding 244.25-10 chr15 66941238 66941596 + 1.25 NA intron (NR_135687, intron 2 of 2) intron (NR_135687, intron 2 of 2) 15098 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 187.5-26 chr16 8725499 8725672 + 1.25 NA intron (NM_001127448, intron 1 of 15) L1MB5|LINE|L1 4872 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 149.75-58 chr6 66868883 66869081 + 1.25 NA Intergenic L1M3|LINE|L1 1081103 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 239.5-28 chr7 84577305 84577667 + 1.25 NA intron (NR_110080, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 45010 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 163.25-49 chr4 82230028 82230196 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR 143879 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 314.5-3 chr15 86983547 86984034 + 1.25 NA intron (NR_135683, intron 1 of 2) L1ME1|LINE|L1 4636 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 163.5-45 chr20 45296302 45296501 + 1.25 NA intron (NM_003833, intron 9 of 10) intron (NM_003833, intron 9 of 10) -10439 NM_001281448 11317 Hs.248217 NM_014276 ENSG00000124232 RBPJL RBPL|RBPSUHL|SUHL recombination signal binding protein for immunoglobulin kappa J region like protein-coding 271.75-6 chr20 49168027 49168430 + 1.25 NA intron (NM_001322930, intron 1 of 12) AluSx|SINE|Alu 20142 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 188.75-31 chr4 72097120 72097290 + 1.25 NA intron (NM_001144756, intron 2 of 4) Tigger15a|DNA|TcMar-Tigger 58073 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 152.5-64 chr22 37649735 37649896 + 1.25 NA intron (NM_018957, intron 14 of 17) MIRc|SINE|MIR 8562 NR_109952 101927051 NR_109952 ENSG00000233360 LOC101927051 - uncharacterized LOC101927051 ncRNA 160.25-5 chr10 58492619 58492851 + 1.25 NA Intergenic Intergenic -20137 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 232.75-16 chr4 188596405 188596641 + 1.25 NA intron (NR_033869, intron 4 of 4) intron (NR_033869, intron 4 of 4) 140945 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 215.25-6 chr10 87746822 87747037 + 1.25 NA 3' UTR (NM_004670, exon 12 of 12) 3' UTR (NM_004670, exon 12 of 12) 71302 NR_135914 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 347.75-5 chr2 121841220 121841827 + 1.25 NA Intergenic Intergenic 85872 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 137.75-29 chr15 95244076 95244202 + 1.25 NA Intergenic AluJr4|SINE|Alu 82961 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 193-34 chr2 203421415 203421650 + 1.25 NA intron (NM_005759, intron 9 of 9) Charlie2b|DNA|hAT-Charlie 54648 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 189-43 chr6 97362165 97362341 + 1.25 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 56667 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 172-16 chr15 92801548 92801706 + 1.25 NA Intergenic Intergenic 6143 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 159.25-20 chr15 42124549 42124767 + 1.25 NA Intergenic L1MC1|LINE|L1 -30096 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 215.75-18 chr4 114074654 114074860 + 1.25 NA Intergenic L1PA17|LINE|L1 -95110 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 231.25-38 chrX 75639781 75639979 + 1.25 NA Intergenic Intergenic 103199 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 146.75-4 chr1 223833011 223833233 + 1.25 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 12825 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 147.25-16 chr14 87077472 87077598 + 1.25 NA Intergenic Intergenic 171757 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 175-29 chr2 151367337 151367556 + 1.25 NA promoter-TSS (NR_039931) promoter-TSS (NR_039931) -888 NR_039931 100616392 NR_039931 ENSG00000264684 MIR4773-1 - microRNA 4773-1 ncRNA 242-3 chr1 189677263 189677582 + 1.25 NA Intergenic LTR48B|LTR|ERV1 798588 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 215.75-29 chr8 137984835 137985035 + 1.25 NA intron (NR_161374, intron 2 of 7) MIRc|SINE|MIR 98610 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 154.5-43 chr2 144193064 144193310 + 1.25 NA intron (NM_001284238, intron 4 of 13) intron (NM_001284238, intron 4 of 13) 18392 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 181.75-43 chr8 105435154 105435408 + 1.25 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 115738 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 134.25-26 chr15 75387200 75387333 + 1.25 NA intron (NM_015477, intron 16 of 20) AluJo|SINE|Alu -18639 NM_001256495 4123 Hs.26232 NM_006715 ENSG00000140400 MAN2C1 MAN6A8|MANA|MANA1 mannosidase alpha class 2C member 1 protein-coding 247.75-16 chr2 197556281 197556637 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR 40161 NM_001204094 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 147-46 chr20 9188011 9188252 + 1.25 NA intron (NM_001172646, intron 1 of 37) L2a|LINE|L2 -29259 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 129.75-62 chr5 8699609 8699751 + 1.25 NA Intergenic Intergenic -140052 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 169.25-31 chr2 186223665 186223862 + 1.25 NA Intergenic L1M1|LINE|L1 -137446 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 118.75-62 chr20 54768730 54768845 + 1.25 NA Intergenic Intergenic 293194 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 166.75-37 chr2 150469584 150469806 + 1.25 NA 3' UTR (NM_001254738, exon 5 of 5) 3' UTR (NM_001254738, exon 5 of 5) 18000 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 136.25-64 chr5 27265352 27265490 + 1.25 NA Intergenic THE1C|LTR|ERVL-MaLR -206871 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 300.25-4 chr10 81815569 81816056 + 1.25 NA Intergenic L1MEd|LINE|L1 -59382 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 185-19 chr2 53713240 53713589 + 1.25 NA intron (NM_001201965, intron 6 of 8) intron (NM_001201965, intron 6 of 8) -54369 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 222-30 chr4 45569644 45569879 + 1.25 NA Intergenic Intergenic 554293 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 159.5-81 chr8 139810968 139811112 + 1.25 NA intron (NM_001160372, intron 21 of 22) HAL1|LINE|L1 -107917 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 156-3 chr1 43079013 43079187 + 1.25 NA Intergenic Intergenic -68804 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 170.75-73 chr8 118693512 118693771 + 1.25 NA intron (NR_038210, intron 3 of 4) L1PB3|LINE|L1 -71678 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 123-22 chr14 67891597 67891754 + 1.25 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 68083 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 220.5-4 chr1 197481180 197481451 + 1.25 NA Intergenic Intergenic 213063 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 280.75-13 chr6 79291619 79292003 + 1.25 NA Intergenic L1ME1|LINE|L1 21573 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 326.25-13 chr3 111782847 111783371 + 1.25 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 50613 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 254.5-23 chr4 160164125 160164430 + 1.25 NA Intergenic L1M3|LINE|L1 -386493 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 264.5-17 chr2 141110476 141110805 + 1.25 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -523955 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 169.5-68 chr5 141751966 141752180 + 1.25 NA Intergenic Intergenic -69843 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 134-41 chr2 176374472 176374641 + 1.25 NA Intergenic Intergenic 105114 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 171.75-32 chr20 7829451 7829687 + 1.25 NA Intergenic Intergenic 110889 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 214-43 chr8 133215748 133216065 + 1.25 NA intron (NM_001204869, intron 2 of 2) MER103C|DNA|hAT-Charlie 24867 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 132-71 chr7 8495733 8495886 + 1.25 NA intron (NM_152745, intron 2 of 2) LTR78|LTR|ERV1 62200 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 253.25-7 chr11 104806482 104806787 + 1.25 NA Intergenic Intergenic 92036 NR_034061 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 191.25-43 chr3 144425769 144426072 + 1.25 NA Intergenic Intergenic 452839 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 193.75-13 chr14 61857417 61857695 + 1.25 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 44853 NM_001367661 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 190.25-7 chr1 242699754 242699993 + 1.25 NA Intergenic MIR|SINE|MIR -175176 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 166.75-6 chr10 15682216 15682359 + 1.25 NA intron (NM_001291494, intron 4 of 28) L2a|LINE|L2 37635 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 154.75-53 chr5 67176678 67176853 + 1.25 NA Intergenic Intergenic 20034 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 195.5-46 chr2 179099468 179099697 + 1.25 NA Intergenic L1ME4a|LINE|L1 -49445 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 175.5-87 chr9 27786093 27786339 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL -212350 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 118.25-95 chr6 155802282 155802455 + 1.25 NA Intergenic L1ME2|LINE|L1 -144429 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 194.5-29 chr19 33652614 33652857 + 1.25 NA intron (NM_001127896, intron 1 of 3) L1MB8|LINE|L1 30782 NM_001127896 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 136.25-16 chr12 1416600 1416743 + 1.25 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -83820 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 289.5-7 chr16 8741635 8742042 + 1.25 NA intron (NM_020686, intron 2 of 15) MIRb|SINE|MIR 21125 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 143.5-33 chr14 28992957 28993118 + 1.25 NA Intergenic Tigger18a|DNA|TcMar-Tigger -207250 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 153.75-57 chr4 116571135 116571311 + 1.25 NA Intergenic L3|LINE|CR1 271498 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 293-4 chr12 15008873 15009194 + 1.25 NA Intergenic Intergenic 7200 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 216.25-20 chr2 145236767 145237036 + 1.25 NA Intergenic Intergenic 568934 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 229.75-3 chr1 173554836 173555056 + 1.25 NA intron (NM_178527, intron 10 of 27) intron (NM_178527, intron 10 of 27) 48126 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 149.5-26 chr12 69217828 69218057 + 1.25 NA Intergenic Intergenic -21627 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 320.75-8 chr7 110278403 110278942 + 1.25 NA Intergenic Intergenic -318459 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 278.25-2 chr1 106057951 106058222 + 1.25 NA Intergenic Intergenic -29833 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 186.5-32 chr2 117667253 117667555 + 1.25 NA Intergenic L1ME3G|LINE|L1 -147287 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 224.75-22 chr9 93847729 93847997 + 1.25 NA Intergenic L1M4b|LINE|L1 28506 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 201.25-26 chr3 151974408 151974610 + 1.25 NA Intergenic Intergenic -46334 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 132.25-89 chr8 107733621 107733764 + 1.25 NA Intergenic Intergenic -235774 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 146-3 chr1 156894954 156895132 + 1.25 NA intron (NM_001080471, intron 1 of 22) intron (NM_001080471, intron 1 of 22) 1312 NM_001080471 375033 Hs.142003 NM_207369 ENSG00000187800 PEAR1 JEDI|MEGF12 platelet endothelial aggregation receptor 1 protein-coding 176.25-58 chr5 174697406 174697654 + 1.25 NA Intergenic MIR|SINE|MIR -27052 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 202.5-57 chr8 76489694 76489987 + 1.25 NA intron (NR_105006, intron 3 of 5) L1MA8|LINE|L1 83186 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 238.25-23 chr6 22932081 22932312 + 1.25 NA Intergenic L1MB7|LINE|L1 -214272 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 191.5-33 chr2 151045938 151046140 + 1.25 NA Intergenic Intergenic 215824 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 180.25-20 chr15 90199261 90199524 + 1.25 NA intron (NM_001324031, intron 1 of 14) L2a|LINE|L2 -1938 NM_198925 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 114.75-4 chr1 195984284 195984451 + 1.25 NA Intergenic L1MC|LINE|L1 104348 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 144.75-18 chr11 69990326 69990469 + 1.25 NA Intergenic L1MB4|LINE|L1 73527 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 265-13 chr17 80768230 80768499 + 1.25 NA intron (NM_020761, intron 6 of 33) intron (NM_020761, intron 6 of 33) 37268 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 135.75-63 chr3 26680122 26680348 + 1.25 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -14322 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 214.75-36 chr7 52123491 52123816 + 1.25 NA Intergenic Intergenic -730397 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 190.25-9 chr10 32155423 32155696 + 1.25 NA Intergenic L1MDa|LINE|L1 -99134 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 187-59 chr7 30011850 30012024 + 1.25 NA non-coding (NR_046479, exon 3 of 3) non-coding (NR_046479, exon 3 of 3) 14765 NR_046478 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 127.75-33 chr14 94950352 94950466 + 1.25 NA Intergenic Intergenic 179767 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 252-32 chr9 135895854 135896177 + 1.25 NA intron (NM_015447, intron 1 of 16) L1MDb|LINE|L1 11531 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 176.25-47 chr3 121099913 121100108 + 1.25 NA intron (NR_145517, intron 5 of 8) L1PA16|LINE|L1 50370 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 230.5-9 chr11 95678980 95679245 + 1.25 NA Intergenic Intergenic 110670 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 228-32 chr5 117234653 117234877 + 1.25 NA Intergenic Intergenic -180747 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 167.25-75 chr7 14384243 14384435 + 1.25 NA intron (NM_001350717, intron 20 of 24) MER58A|DNA|hAT-Charlie -392914 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 188-41 chr7 95244254 95244519 + 1.25 NA intron (NM_017650, intron 7 of 15) intron (NM_017650, intron 7 of 15) 80146 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 153-37 chr4 63766635 63766776 + 1.25 NA Intergenic Intergenic 642745 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 253.25-13 chr19 12105718 12105969 + 1.25 NA intron (NM_001348163, intron 2 of 3) L1MCa|LINE|L1 13546 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 120-40 chr18 6217907 6218056 + 1.25 NA intron (NM_001365769, intron 10 of 16) intron (NM_001365769, intron 10 of 16) -38763 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 161.75-8 chr12 3711095 3711320 + 1.25 NA intron (NM_001144958, intron 3 of 19) MLT1A0-int|LTR|ERVL-MaLR 41902 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 159.75-48 chr4 150378658 150378809 + 1.25 NA intron (NM_001367550, intron 47 of 56) intron (NM_001367550, intron 47 of 56) -200356 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 123.25-20 chr12 132763156 132763315 + 1.25 NA Intergenic L1PREC2|LINE|L1 -1403 NM_015114 23141 Hs.654628 NM_015114 ENSG00000176915 ANKLE2 KIAA0692|LEMD7|Lem4|MCPH16 ankyrin repeat and LEM domain containing 2 protein-coding 257-16 chr6 36414505 36414858 + 1.25 NA intron (NM_152990, intron 3 of 4) intron (NM_152990, intron 3 of 4) -26881 NM_001207037 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 177.25-12 chr15 85696649 85696866 + 1.25 NA intron (NM_007200, intron 17 of 36) L1MEd|LINE|L1 61968 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 209.25-24 chr22 27268895 27269151 + 1.25 NA Intergenic MIRb|SINE|MIR -41628 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 205-35 chr5 135227017 135227200 + 1.25 NA intron (NR_161235, intron 3 of 5) MIR|SINE|MIR 21069 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 266.25-9 chr16 69900138 69900404 + 1.25 NA intron (NM_001270453, intron 5 of 20) L1ME4a|LINE|L1 -24768 NM_199424 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 127.25-59 chr22 41183172 41183296 + 1.25 NA Intergenic Intergenic 14267 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 316.25-7 chr8 42977418 42977910 + 1.25 NA intron (NM_032410, intron 13 of 21) AluSz6|SINE|Alu -78635 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 123.75-26 chr12 11887848 11887978 + 1.25 NA intron (NM_001987, intron 7 of 7) LTR33B|LTR|ERVL -161948 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 136.5-34 chr14 61550908 61551086 + 1.25 NA TTS (NM_006255) TTS (NM_006255) 19197 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 153.75-33 chr16 71839361 71839518 + 1.25 NA Intergenic L1MD1|LINE|L1 -6537 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 363.5-3 chr15 88152922 88153479 + 1.25 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 52774 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 160.5-65 chr6 72926539 72926745 + 1.25 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 41111 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 179.25-22 chr2 194168211 194168431 + 1.25 NA Intergenic Intergenic -175948 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 120-71 chr4 133650091 133650204 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 500853 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 237.25-9 chr12 15649282 15649637 + 1.25 NA intron (NM_004447, intron 14 of 20) intron (NM_004447, intron 14 of 20) 102848 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 269.25-9 chr18 5040862 5041257 + 1.25 NA Intergenic Intergenic -40123 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 274.5-21 chr4 59496492 59496741 + 1.25 NA Intergenic AluSp|SINE|Alu 483043 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 324.5-16 chr6 94246058 94246362 + 1.25 NA Intergenic Intergenic 527907 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 152.75-8 chr11 95719669 95719843 + 1.25 NA Intergenic Intergenic 70026 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 176.5-12 chr11 28764269 28764496 + 1.25 NA Intergenic Intergenic -286834 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 279.25-14 chr2 74546361 74546651 + 1.25 NA intron (NM_032603, intron 4 of 13) L2a|LINE|L2 -2514 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 172.5-49 chr3 120072908 120073137 + 1.25 NA intron (NM_002093, intron 1 of 11) MIR|SINE|MIR 11626 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 184-45 chr5 104421053 104421288 + 1.25 NA Intergenic LTR16E1|LTR|ERVL -678304 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 175.25-4 chr1 213341309 213341492 + 1.25 NA Intergenic Intergenic 290159 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 127-102 chrX 29335810 29335957 + 1.25 NA intron (NM_014271, intron 3 of 10) intron (NM_014271, intron 3 of 10) -238395 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 284.25-24 chr7 122470082 122470503 + 1.25 NA intron (NM_001167940, intron 14 of 29) intron (NM_001167940, intron 14 of 29) -165542 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 178.25-30 chr2 165278890 165279166 + 1.25 NA intron (NM_001040143, intron 2 of 27) intron (NM_001040143, intron 2 of 27) -15027 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 150-31 chr18 8811798 8811927 + 1.25 NA intron (NM_015210, intron 11 of 16) intron (NM_015210, intron 11 of 16) 94481 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 207-29 chr2 217401850 217402207 + 1.25 NA intron (NR_026597, intron 8 of 12) L1ME5|LINE|L1 119295 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 210.75-11 chr14 62233417 62233672 + 1.25 NA Intergenic L1M4|LINE|L1 -93571 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 167.25-77 chr7 80341301 80341459 + 1.25 NA Intergenic Intergenic 33059 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 190.75-51 chr7 45965256 45965533 + 1.25 NA Intergenic Intergenic -44122 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 185.75-11 chr10 111773395 111773570 + 1.25 NA Intergenic Intergenic 410283 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 160.25-49 chr6 36654651 36654914 + 1.25 NA Intergenic AluSq2|SINE|Alu 20344 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 217-17 chr3 57671698 57671947 + 1.25 NA intron (NM_152678, intron 3 of 19) intron (NM_152678, intron 3 of 19) 21255 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 226.25-22 chr20 49477132 49477415 + 1.25 NA intron (NM_004975, intron 1 of 1) MIRb|SINE|MIR 5395 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 126-81 chr7 44920539 44920721 + 1.25 NA Intergenic Intergenic -35100 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 130-11 chr11 78846113 78846260 + 1.25 NA intron (NM_001098816, intron 12 of 33) MIRc|SINE|MIR -271322 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 243-20 chr4 86621660 86622012 + 1.25 NA intron (NM_080685, intron 1 of 47) (TATTCT)n|Simple_repeat|Simple_repeat 27521 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 130.5-34 chr14 39001134 39001411 + 1.25 NA Intergenic MIRb|SINE|MIR -84390 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 167-20 chr17 35241920 35242119 + 1.25 NA Intergenic Intergenic -1053 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 209.25-61 chrX 152486633 152486816 + 1.25 NA Intergenic L1MEg1|LINE|L1 -35409 NM_000808 2556 Hs.123024 NM_000808 ENSG00000011677 GABRA3 - gamma-aminobutyric acid type A receptor alpha3 subunit protein-coding 174.5-72 chr7 4094555 4094753 + 1.25 NA intron (NM_152744, intron 22 of 44) intron (NM_152744, intron 22 of 44) -35031 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 337-7 chr2 186704106 186704420 + 1.25 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 10203 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 177.75-7 chr12 65066064 65066278 + 1.25 NA intron (NM_007191, intron 6 of 9) MLT1J2|LTR|ERVL-MaLR 55134 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 283.75-10 chr3 88933600 88934047 + 1.25 NA Intergenic LTR52|LTR|ERVL -173798 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 266.5-8 chr12 125711642 125711903 + 1.25 NA Intergenic L2b|LINE|L2 89320 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 188-47 chr9 8187039 8187208 + 1.25 NA Intergenic Intergenic -387345 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 207.25-19 chr3 187473962 187474131 + 1.25 NA Intergenic MER4-int|LTR|ERV1 27000 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 138.25-60 chr3 95791429 95791618 + 1.25 NA Intergenic Intergenic -108330 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 158.75-31 chr2 143172838 143173108 + 1.25 NA intron (NM_018460, intron 2 of 13) L2|LINE|L2 43554 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 401.25-2 chr11 76669851 76670353 + 1.25 NA promoter-TSS (NM_005512) promoter-TSS (NM_005512) -102 NM_005512 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 295.25-4 chr11 114641419 114641760 + 1.25 NA Intergenic L1M5|LINE|L1 -36938 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 143.25-60 chr5 64741863 64742060 + 1.25 NA intron (NM_173829, intron 2 of 4) intron (NM_173829, intron 2 of 4) 26730 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 159-63 chr8 101222915 101223065 + 1.25 NA Intergenic Intergenic -16926 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 194.75-20 chr2 65096518 65096772 + 1.25 NA intron (NM_004161, intron 3 of 5) intron (NM_004161, intron 3 of 5) 33461 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 147.5-11 chr10 106979902 106980160 + 1.25 NA intron (NM_001206569, intron 1 of 25) MIRb|SINE|MIR 184675 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 133-56 chr6 115046247 115046425 + 1.25 NA Intergenic Intergenic 597499 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 396-4 chr8 131959002 131959542 + 1.25 NA intron (NR_136616, intron 7 of 23) intron (NR_136616, intron 7 of 23) 42499 NM_001323557 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 205.5-3 chr1 232432677 232432942 + 1.25 NA intron (NM_020808, intron 13 of 20) L1ME3B|LINE|L1 82799 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 215.5-46 chr7 14321222 14321576 + 1.25 NA intron (NM_001350717, intron 22 of 24) L1ME3A|LINE|L1 -329974 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 200-25 chr2 158642930 158643133 + 1.25 NA intron (NM_001005476, intron 11 of 20) intron (NM_001005476, intron 11 of 20) 91971 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 178-16 chr13 101067440 101067727 + 1.25 NA intron (NM_001350749, intron 39 of 43) intron (NM_001350749, intron 39 of 43) -123219 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 243-29 chr7 126504840 126505135 + 1.25 NA intron (NM_001371085, intron 9 of 10) intron (NM_001371085, intron 9 of 10) 553197 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 217.25-37 chr9 26768210 26768466 + 1.25 NA Intergenic Intergenic 124464 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 204.25-53 chr8 10178380 10178704 + 1.25 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 82891 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 271-23 chr8 107142024 107142294 + 1.25 NA Intergenic Intergenic 194356 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 245.25-23 chr5 108509551 108509884 + 1.25 NA Intergenic Intergenic -127619 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 193.5-71 chr7 9963485 9963801 + 1.25 NA Intergenic AluJr|SINE|Alu 329373 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 157-8 chr10 88577558 88577693 + 1.25 NA intron (NM_018363, intron 3 of 6) intron (NM_018363, intron 3 of 6) 5693 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 209-44 chr9 137180183 137180428 + 1.25 NA exon (NM_013366, exon 10 of 13) exon (NM_013366, exon 10 of 13) -8249 NM_001282477 100505993 Hs.512463 NM_001282477 ENSG00000185863 TMEM210 - transmembrane protein 210 protein-coding 199.75-42 chr8 117703191 117703492 + 1.25 NA Intergenic Intergenic 182628 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 136.75-3 chr1 162897227 162897465 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -28531 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 140.5-3 chr1 68341128 68341365 + 1.25 NA Intergenic L1MB3|LINE|L1 -108700 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 285.75-15 chr20 12066361 12066755 + 1.25 NA Intergenic Intergenic 148665 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 143.5-11 chr10 69836580 69836819 + 1.25 NA intron (NM_001368898, intron 3 of 33) intron (NM_001368898, intron 3 of 33) 34793 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 181.25-39 chr22 46376228 46376456 + 1.25 NA intron (NM_014246, intron 24 of 34) L1M5|LINE|L1 40628 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 308.75-10 chr7 139469705 139469997 + 1.25 NA intron (NM_198508, intron 3 of 4) intron (NM_198508, intron 3 of 4) 13822 NM_198508 346689 Hs.17572 NM_198508 ENSG00000188883 KLRG2 CLEC15B killer cell lectin like receptor G2 protein-coding 162.5-65 chr5 14578642 14578829 + 1.25 NA Intergenic Intergenic -3057 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 219-17 chr2 147249349 147249698 + 1.25 NA Intergenic Intergenic -594994 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 186.75-13 chr14 27021634 27021829 + 1.25 NA Intergenic AluJr|SINE|Alu 113089 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 204.25-13 chr12 69263376 69263578 + 1.25 NA intron (NM_007007, intron 9 of 9) intron (NM_007007, intron 9 of 9) 9741 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 172.5-66 chr5 173130349 173130697 + 1.25 NA intron (NM_153607, intron 8 of 8) intron (NM_153607, intron 8 of 8) -14008 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 208-17 chr2 132749979 132750167 + 1.25 NA intron (NM_207481, intron 14 of 17) MIRc|SINE|MIR -78547 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 215-11 chr12 8054183 8054481 + 1.25 NA 3' UTR (NM_018416, exon 11 of 11) 3' UTR (NM_018416, exon 11 of 11) 12027 NM_001326477 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 199.25 chr1 34503554 34503779 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 166028 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 130-16 chr11 111283870 111284184 + 1.25 NA intron (NM_198498, intron 3 of 4) intron (NM_198498, intron 3 of 4) -14519 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 271.75-2 chr17 32862612 32862874 + 1.25 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 14381 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 120.5-97 chr7 17033373 17033500 + 1.25 NA Intergenic Intergenic -151453 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 161.75-12 chr12 78798408 78798701 + 1.25 NA Intergenic Eulor10|DNA?|DNA? -65428 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 194.25-13 chr13 87966839 87967018 + 1.25 NA Intergenic Intergenic -156408 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 141.5-23 chr12 39031224 39031357 + 1.25 NA Intergenic Intergenic -125699 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 172-12 chr14 61032998 61033211 + 1.25 NA intron (NR_033344, intron 6 of 16) intron (NR_033344, intron 6 of 16) -51414 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 207-14 chr13 43811111 43811314 + 1.25 NA Intergenic MamGypLTR1d|LTR|Gypsy -24240 NM_001347967 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 156.75-52 chr2 181159299 181159498 + 1.25 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 35561 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 166.5-75 chr4 137911421 137911657 + 1.25 NA Intergenic Intergenic -177475 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 251-14 chr17 57624136 57624358 + 1.25 NA intron (NM_001322250, intron 9 of 13) intron (NM_001322250, intron 9 of 13) -15835 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 166.5-23 chr12 31834533 31834733 + 1.25 NA Intergenic AluSc|SINE|Alu -42335 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 239.25-16 chr2 28127046 28127274 + 1.25 NA intron (NM_199193, intron 7 of 13) L1PA3|LINE|L1 79801 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 164.5-49 chr20 55113051 55113277 + 1.25 NA Intergenic Intergenic -309879 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 337.25-7 chr4 135541144 135541437 + 1.25 NA Intergenic L1PA7|LINE|L1 346803 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 215.25-3 chr1 112166957 112167279 + 1.25 NA Intergenic Intergenic 176582 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 206 chr1 119439671 119439880 + 1.25 NA Intergenic Intergenic 24625 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 343.5-4 chr3 109895648 109896226 + 1.25 NA Intergenic Intergenic 293109 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 130.5-21 chr11 50575373 50575490 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 166284 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 201-23 chr18 13054666 13054914 + 1.25 NA intron (NM_032142, intron 18 of 44) intron (NM_032142, intron 18 of 44) 63428 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 117-15 chr11 17327591 17327759 + 1.25 NA intron (NM_001352669, intron 12 of 14) L1MA2|LINE|L1 -24125 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 234.25-10 chr16 68034250 68034493 + 1.25 NA intron (NM_017803, intron 2 of 16) AluSz6|SINE|Alu -10504 NM_018380 55794 Hs.458313 NM_018380 ENSG00000182810 DDX28 MDDX28 DEAD-box helicase 28 protein-coding 172-17 chr16 13535030 13535217 + 1.25 NA Intergenic AluSz|SINE|Alu -385034 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 179.25-18 chr2 53931907 53932257 + 1.25 NA exon (NM_014614, exon 10 of 47) exon (NM_014614, exon 10 of 47) 38911 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 304.25-6 chr12 118374742 118375028 + 1.25 NA Intergenic Intergenic -1670 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 244-24 chr7 21703742 21704120 + 1.25 NA intron (NM_001277115, intron 37 of 81) intron (NM_001277115, intron 37 of 81) 160892 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 155.5-64 chr20 47317980 47318252 + 1.25 NA promoter-TSS (NR_024594) promoter-TSS (NR_024594) -386 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 211.25-31 chr5 58444619 58444898 + 1.25 NA Intergenic Intergenic 15328 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 185.25-17 chr14 60296219 60296497 + 1.25 NA 3' UTR (NM_177952, exon 6 of 6) 3' UTR (NM_177952, exon 6 of 6) -26838 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 200-20 chr17 55108886 55109177 + 1.25 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -140246 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 120-35 chr15 71585772 71585960 + 1.25 NA intron (NM_001286429, intron 1 of 11) L1MA9|LINE|L1 38630 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 173-27 chr18 69048033 69048351 + 1.25 NA intron (NM_001093729, intron 9 of 9) intron (NM_001093729, intron 9 of 9) 250112 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 130.25-4 chr1 55132460 55132644 + 1.25 NA exon (NM_015306, exon 31 of 68) exon (NM_015306, exon 31 of 68) 82812 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 175-50 chr5 126368765 126368917 + 1.25 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 8721 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 115.25-58 chr20 47733767 47733938 + 1.25 NA intron (NM_198596, intron 3 of 20) Tigger18a|DNA|TcMar-Tigger 52212 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 252.25-14 chr2 60393382 60393770 + 1.25 NA Intergenic L1ME3C|LINE|L1 -2201 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 155.75-2 chr1 30866995 30867167 + 1.25 NA Intergenic Intergenic 41677 NM_014654 9672 Hs.158287 NM_014654 ENSG00000162512 SDC3 SDCN|SYND3 syndecan 3 protein-coding 126.5-114 chr8 77401737 77401940 + 1.25 NA Intergenic Intergenic -48859 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 159.75-57 chr6 51431277 51431411 + 1.25 NA Intergenic Intergenic -190526 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 166.5-21 chr12 9368652 9368812 + 1.25 NA non-coding (NR_120479, exon 1 of 4) non-coding (NR_120479, exon 1 of 4) 1268 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 142.5-66 chr4 108450640 108450760 + 1.25 NA Intergenic Intergenic -106533 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 159.25-65 chr7 40727796 40727956 + 1.25 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 252063 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 117.5-8 chr10 34840046 34840222 + 1.25 NA Intergenic L1ME3D|LINE|L1 24366 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 217 chr1 26711226 26711465 + 1.25 NA intron (NM_139135, intron 1 of 19) AluSz|SINE|Alu 15330 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 181.25-37 chr22 40544911 40545080 + 1.25 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -11168 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 274.25-11 chr3 80532903 80533172 + 1.25 NA Intergenic L1MD1|LINE|L1 -231860 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 208-25 chr21 44785642 44785941 + 1.25 NA intron (NM_001202489, intron 1 of 3) intron (NM_001202489, intron 1 of 3) 16029 NM_001202489 7327 Hs.529420 NM_003343 ENSG00000184787 UBE2G2 UBC7 ubiquitin conjugating enzyme E2 G2 protein-coding 133.5-52 chr2 194082994 194083103 + 1.25 NA Intergenic Intergenic -261221 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 136.25-14 chr11 117605603 117605787 + 1.25 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 191521 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 267.75-8 chr21 28737616 28737870 + 1.25 NA Intergenic Intergenic 147624 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 171.75-29 chr2 157299723 157299920 + 1.25 NA intron (NM_001329868, intron 7 of 10) intron (NM_001329868, intron 7 of 10) 26003 NM_001304346 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 149.5-90 chr6 22652982 22653174 + 1.25 NA intron (NR_134614, intron 2 of 2) intron (NR_134614, intron 2 of 2) 64846 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 130.25-87 chr8 110133884 110134068 + 1.25 NA Intergenic Intergenic -158205 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 156.25-3 chr1 220837090 220837419 + 1.25 NA intron (NR_046901, intron 1 of 2) L1MC4a|LINE|L1 7999 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 197.25-28 chr15 85580154 85580322 + 1.25 NA exon (NM_006738, exon 7 of 37) exon (NM_006738, exon 7 of 37) -39712 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 140-20 chr14 72030109 72030240 + 1.25 NA intron (NM_001370288, intron 2 of 16) L1MEd|LINE|L1 96647 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 239.5-32 chr8 122568624 122568850 + 1.25 NA promoter-TSS (NR_131202) promoter-TSS (NR_131202) -93 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 328.5-11 chr21 27486025 27486521 + 1.25 NA Intergenic Intergenic -236106 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 321.75-17 chr5 159939885 159940182 + 1.25 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 23551 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 129-69 chr6 124148471 124148663 + 1.25 NA intron (NM_001300737, intron 2 of 7) L1MB7|LINE|L1 -134438 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 291.25-22 chr9 73889255 73889634 + 1.25 NA Intergenic Intergenic -482087 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 131.75-9 chr10 31220560 31220710 + 1.25 NA intron (NR_134478, intron 1 of 2) L1MEd|LINE|L1 32752 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 375-7 chr8 119039190 119039791 + 1.25 NA intron (NM_001324095, intron 3 of 7) L2b|LINE|L2 -27757 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 167.25-53 chr3 168172878 168173118 + 1.25 NA Intergenic L1MD2|LINE|L1 -76524 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 135-30 chr17 64227774 64227892 + 1.25 NA intron (NM_018469, intron 1 of 11) MIRb|SINE|MIR 2901 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 250.5-13 chr15 69210269 69210664 + 1.25 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) 49831 NM_015554 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 175.5-8 chr1 209441137 209441341 + 1.25 NA Intergenic Intergenic 9106 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 200-24 chr2 20856390 20856589 + 1.25 NA Intergenic Intergenic -33359 NM_001282723 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 208.5-7 chr10 51085290 51085456 + 1.25 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 10886 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 191.25-18 chr12 41410774 41411007 + 1.25 NA intron (NM_001164595, intron 3 of 9) AluJb|SINE|Alu -26849 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 126.25-34 chr16 74508682 74508879 + 1.25 NA intron (NR_027264, intron 3 of 26) intron (NR_027264, intron 3 of 26) -87310 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 212.75-13 chr18 60258024 60258234 + 1.25 NA Intergenic Intergenic 114646 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 221.5-25 chr20 51026303 51026508 + 1.25 NA Intergenic Intergenic -3298 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 207-52 chr8 102802964 102803209 + 1.25 NA Intergenic L1MA3|LINE|L1 -3736 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 212.75-18 chr20 10018425 10018710 + 1.25 NA Intergenic L1MB8|LINE|L1 -16420 NM_001303472 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 118.75-45 chr18 63902126 63902314 + 1.25 NA intron (NM_002575, intron 6 of 7) intron (NM_002575, intron 6 of 7) -5738 NM_005024 5273 Hs.158339 NM_005024 ENSG00000242550 SERPINB10 PI-10|PI10 serpin family B member 10 protein-coding 124.25-54 chr20 15344036 15344296 + 1.25 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 147326 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 177-51 chr7 19096592 19096824 + 1.25 NA Intergenic Intergenic 20928 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 273.75-17 chr7 159146171 159146502 + 1.25 NA Intergenic Intergenic -1379 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 155.75-11 chr11 5717818 5718176 + 1.25 NA Intergenic L1MA9|LINE|L1 -18451 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 146.5-12 chr10 120553500 120553640 + 1.25 NA intron (NM_001030059, intron 5 of 6) MLT1A0|LTR|ERVL-MaLR -44379 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 269.75-9 chr2 45142777 45143083 + 1.25 NA Intergenic AluJr|SINE|Alu 112011 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 129.5-21 chr12 10055341 10055492 + 1.25 NA intron (NM_207345, intron 5 of 8) intron (NM_207345, intron 5 of 8) 24734 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 158-56 chr6 24806503 24806703 + 1.25 NA intron (NM_001286445, intron 21 of 21) intron (NM_001286445, intron 21 of 21) -7686 NM_001282492 101928603 Hs.635133 NM_001282492 ENSG00000260286 ARMH2 C6orf229 armadillo like helical domain containing 2 protein-coding 178.5-87 chr8 115681675 115681820 + 1.25 NA Intergenic L2a|LINE|L2 -12772 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 148-63 chr8 64934755 64934898 + 1.25 NA Intergenic L1MB8|LINE|L1 -136089 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 189.25-20 chr18 70475312 70475537 + 1.25 NA Intergenic Charlie25|DNA|hAT-Charlie -90833 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 114.75-39 chr17 62685223 62685469 + 1.25 NA intron (NM_006039, intron 20 of 29) intron (NM_006039, intron 20 of 29) -20860 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 132.25-82 chr6 63556742 63556918 + 1.25 NA Intergenic Intergenic -15182 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 185.5-3 chr1 106978117 106978367 + 1.25 NA Intergenic Intergenic -78432 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 191.5-70 chr8 140265677 140265895 + 1.25 NA intron (NM_001160372, intron 15 of 22) intron (NM_001160372, intron 15 of 22) -165251 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 113.5-38 chr14 81204114 81204213 + 1.25 NA intron (NM_015859, intron 2 of 8) intron (NM_015859, intron 2 of 8) -1329 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 197-41 chr4 121818603 121818822 + 1.25 NA intron (NM_001237, intron 6 of 7) intron (NM_001237, intron 6 of 7) 5171 NM_001237 890 Hs.58974 NM_001237 ENSG00000145386 CCNA2 CCN1|CCNA cyclin A2 protein-coding 203.75-15 chr17 31292419 31292584 + 1.25 NA intron (NM_001042492, intron 36 of 57) MER8|DNA|TcMar-Tigger 4738 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 244.5-11 chr16 89777338 89777642 + 1.25 NA intron (NM_000135, intron 20 of 42) AluSx|SINE|Alu 39157 NM_001286167 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH FA complementation group A protein-coding 165.5-40 chr18 3202550 3202939 + 1.25 NA intron (NM_019856, intron 2 of 36) L1M4a2|LINE|L1 17224 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 220.5-13 chr12 89094951 89095434 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -75500 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 262-13 chr14 60427916 60428143 + 1.25 NA Intergenic L1MA8|LINE|L1 58034 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 394.75-2 chr16 1999141 1999571 + 1.25 NA intron (NM_178167, intron 11 of 13) intron (NM_178167, intron 11 of 13) 9386 NM_004209 9143 Hs.435277 NM_004209 ENSG00000127561 SYNGR3 - synaptogyrin 3 protein-coding 125.75-5 chr1 163889933 163890061 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -466806 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 155.5-13 chr1 181315536 181315697 + 1.25 NA Intergenic Intergenic 79228 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 159-6 chr10 33455723 33455877 + 1.25 NA Intergenic L2c|LINE|L2 -120895 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 170.25-37 chr2 216898653 216899053 + 1.25 NA Intergenic Intergenic 28081 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 186-16 chr14 68765008 68765164 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 28828 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 286.5-5 chr11 83385592 83386050 + 1.25 NA Intergenic L1P3|LINE|L1 -99414 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 167.25-60 chr5 39122632 39122963 + 1.25 NA intron (NM_001243093, intron 13 of 18) intron (NM_001243093, intron 13 of 18) -48398 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 274.5-23 chr4 99210212 99210709 + 1.25 NA exon (NM_000672, exon 4 of 8) exon (NM_000672, exon 4 of 8) 8786 NR_132990 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 185.5-4 chr1 111432055 111432275 + 1.25 NA Intergenic Intergenic -4430 NM_002557 5016 Hs.1154 NM_002557 ENSG00000085465 OVGP1 CHIT5|EGP|MUC9|OGP oviductal glycoprotein 1 protein-coding 131.75-3 chr1 43504749 43504945 + 1.25 NA Intergenic AluSz|SINE|Alu -21190 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 308.25-11 chr8 79956349 79956813 + 1.25 NA intron (NM_014018, intron 2 of 2) L1PA14|LINE|L1 73678 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 147.25-58 chr6 87537293 87537537 + 1.25 NA intron (NR_146738, intron 7 of 20) intron (NR_146738, intron 7 of 20) 52572 NM_020320 57038 Hs.485910 NM_020320 ENSG00000146282 RARS2 ArgRS|DALRD2|PCH6|PRO1992|RARSL arginyl-tRNA synthetase 2, mitochondrial protein-coding 128.25-59 chr5 29989896 29990069 + 1.25 NA Intergenic Intergenic 109422 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 182.25-36 chr3 122208795 122209069 + 1.25 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 24605 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 196.25-51 chr4 73828103 73828277 + 1.25 NA Intergenic L1M5|LINE|L1 -8488 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 195.75-10 chr12 40271252 40271511 + 1.25 NA intron (NM_198578, intron 14 of 50) intron (NM_198578, intron 14 of 50) 46384 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 148.25-13 chr11 105303933 105304128 + 1.25 NA Intergenic Intergenic -164261 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 149.75-7 chr10 118406813 118407045 + 1.25 NA Intergenic Intergenic 49821 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 147.75-66 chr6 44111589 44111748 + 1.25 NA Intergenic L2b|LINE|L2 14599 NM_001318770 64928 Hs.311190 NM_032111 ENSG00000180992 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 167.5-17 chr12 40238254 40238475 + 1.25 NA intron (NM_198578, intron 5 of 50) intron (NM_198578, intron 5 of 50) 13367 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 125.75-19 chr13 28628208 28628376 + 1.25 NA Intergenic Intergenic -30838 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 190-51 chr8 71543996 71544422 + 1.25 NA intron (NM_001370336, intron 1 of 17) intron (NM_001370336, intron 1 of 17) 3495 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 143.25-26 chr14 61766895 61767071 + 1.25 NA exon (NM_003082, exon 2 of 10) exon (NM_003082, exon 2 of 10) 4563 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 241-16 chr17 17376353 17376702 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 73154 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 186.5-62 chr9 99932231 99932449 + 1.25 NA intron (NM_017919, intron 3 of 7) L2|LINE|L2 25686 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 203-9 chr13 75492690 75492977 + 1.25 NA Intergenic L2c|LINE|L2 -10664 NM_014832 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 248.75-13 chr3 197172593 197172849 + 1.25 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) 11151 NR_158766 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 125-22 chr13 24719298 24719487 + 1.25 NA Intergenic AluJo|SINE|Alu 38981 NM_001185085 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 262.5-22 chr2 184881869 184882138 + 1.25 NA intron (NM_194250, intron 2 of 3) L1PA15|LINE|L1 283474 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 215.75-8 chr19 32022307 32022499 + 1.25 NA Intergenic Intergenic -3459 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 183.25-47 chr6 142587560 142587764 + 1.25 NA intron (NR_027312, intron 1 of 2) LTR59|LTR|ERV1 50174 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 202.25-23 chr21 28500650 28500871 + 1.25 NA Intergenic MER65-int|LTR|ERV1 -38558 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 207.25-22 chr4 156211924 156212189 + 1.25 NA Intergenic L1PA15|LINE|L1 -258190 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 249.5-6 chr16 74889386 74889631 + 1.25 NA intron (NM_030581, intron 21 of 25) intron (NM_030581, intron 21 of 25) 95615 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 352.5 chr1 191304565 191304908 + 1.25 NA Intergenic Intergenic -76238 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 175.25-23 chr17 28855045 28855257 + 1.25 NA exon (NM_005702, exon 1 of 10) exon (NM_005702, exon 1 of 10) 135 NR_134328 26284 Hs.3426 NM_005702 ENSG00000132591 ERAL1 CEGA|ERA|ERA-W|ERAL1A|ERAL1B|H-ERA|HERA-A|HERA-B|PRLTS6 Era like 12S mitochondrial rRNA chaperone 1 protein-coding 194-5 chr10 92630312 92630494 + 1.25 NA intron (NM_004523, intron 12 of 21) intron (NM_004523, intron 12 of 21) 37273 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 130.75-19 chr14 36667315 36667436 + 1.25 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 9807 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 129.75-72 chr6 133732465 133732594 + 1.25 NA intron (NR_109982, intron 4 of 8) L1MB2|LINE|L1 -88618 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 148-37 chr2 151023863 151024080 + 1.25 NA Intergenic L1MA5|LINE|L1 237892 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 257.25-25 chrX 83801655 83802013 + 1.25 NA Intergenic L1MA9|LINE|L1 -59292 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 196.75-7 chr12 63515082 63515249 + 1.25 NA Intergenic LTR107_Mam|LTR|LTR 153328 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 116.5-68 chr2 190855864 190856020 + 1.25 NA Intergenic Intergenic -24879 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 172.5-25 chr18 10819318 10819537 + 1.25 NA intron (NM_022068, intron 7 of 51) A-rich|Low_complexity|Low_complexity -59778 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 285 chr1 40726486 40726794 + 1.25 NA intron (NM_001142590, intron 6 of 14) AluJb|SINE|Alu -12196 NM_001308114 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 241.75-8 chr12 99913335 99913584 + 1.25 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 71195 NM_152788 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 212.5-49 chr5 168054813 168055171 + 1.25 NA intron (NM_001368145, intron 5 of 26) intron (NM_001368145, intron 5 of 26) -110853 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 141.25-37 chr16 46485483 46485688 + 1.25 NA intron (NR_026556, intron 12 of 16) L1MA5|LINE|L1 83512 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 208.25-5 chr10 29445102 29445314 + 1.25 NA intron (NR_110927, intron 2 of 2) MSTA|LTR|ERVL-MaLR 34965 NR_110928 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 161.5-26 chr12 67047392 67047642 + 1.25 NA Intergenic L1ME4a|LINE|L1 48767 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 227-12 chr14 88575929 88576160 + 1.25 NA intron (NM_001326306, intron 8 of 12) intron (NM_001326306, intron 8 of 12) 12697 NM_207661 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 193.25-46 chr8 98716530 98716727 + 1.25 NA intron (NM_006281, intron 4 of 10) L1MB3|LINE|L1 109043 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 165-47 chr6 64729299 64729494 + 1.25 NA intron (NM_001292009, intron 22 of 43) MLT1I|LTR|ERVL-MaLR -572022 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 158.75-23 chr16 50617678 50617864 + 1.25 NA intron (NM_033119, intron 4 of 9) MER91A|DNA|hAT-Tip100 -51084 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 212.5-32 chr20 58704163 58704468 + 1.25 NA intron (NM_024663, intron 6 of 11) intron (NM_024663, intron 6 of 11) 11515 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 203-33 chr7 7807021 7807336 + 1.25 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -88571 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 232.75 chr1 10342349 10342618 + 1.25 NA intron (NM_001365951, intron 33 of 48) intron (NM_001365951, intron 33 of 48) 43517 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 172-40 chr6 56857139 56857374 + 1.25 NA intron (NM_001144769, intron 3 of 96) AluJr|SINE|Alu -5340 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 133.5-8 chr1 246318964 246319142 + 1.25 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 98359 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 233.75-8 chr12 25858773 25859087 + 1.25 NA Intergenic Intergenic 15149 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 213.75-22 chr16 73982368 73982543 + 1.25 NA Intergenic Intergenic 233066 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 238.25-11 chr18 73062976 73063282 + 1.25 NA Intergenic Intergenic 194089 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 153.75-5 chr1 74078577 74078749 + 1.25 NA intron (NM_001105659, intron 5 of 7) L3|LINE|CR1 119513 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 256.25-13 chr7 8892890 8893180 + 1.25 NA Intergenic Intergenic 459426 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 180.5-87 chr8 76474683 76474989 + 1.25 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 68182 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 242.25-26 chr6 112105071 112105264 + 1.25 NA Intergenic L1MEc|LINE|L1 17576 NM_001033564 619208 Hs.591340 NM_001033564 ENSG00000203778 FAM229B C6orf225 family with sequence similarity 229 member B protein-coding 292.75-15 chr8 114603423 114603769 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 1064417 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 255-18 chr4 63850490 63850742 + 1.25 NA Intergenic Intergenic 558834 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 251.5-29 chr6 150839965 150840320 + 1.25 NA exon (NM_001329799, exon 16 of 16) exon (NM_001329799, exon 16 of 16) -25537 NM_001242767 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 248.75-15 chr5 158749418 158749779 + 1.25 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) -339825 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 271.75-4 chr2 184876225 184876485 + 1.25 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 277826 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 197.75-11 chr13 63157351 63157625 + 1.25 NA Intergenic Intergenic 170606 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 226.25-7 chr13 38589505 38589759 + 1.25 NA intron (NR_126377, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 21908 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 148.25-19 chr12 71970387 71970553 + 1.25 NA intron (NM_173353, intron 5 of 10) intron (NM_173353, intron 5 of 10) 31625 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 147.5-46 chr2 71290951 71291135 + 1.25 NA Intergenic Charlie8|DNA|hAT-Charlie -40712 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 284.75-7 chr2 21203936 21204286 + 1.25 NA Intergenic Intergenic 80125 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 183.25-24 chr2 114089854 114090054 + 1.25 NA Intergenic Intergenic -109970 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 203.75-35 chr5 160844398 160844730 + 1.25 NA intron (NM_001366652, intron 1 of 24) AluSz6|SINE|Alu 7647 NM_001366654 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 158-21 chr16 26536358 26536568 + 1.25 NA Intergenic L1MEc|LINE|L1 511226 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 214.5-21 chr19 24335810 24336091 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -172503 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 156-6 chr1 151591843 151591998 + 1.25 NA Intergenic MIR|SINE|MIR -20130 NM_001330723 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 170-29 chr3 38189348 38189600 + 1.25 NA intron (NM_005109, intron 2 of 17) intron (NM_005109, intron 2 of 17) 23937 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 155.25-22 chr15 26411126 26411378 + 1.25 NA Intergenic Intergenic 217838 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 154.25-61 chr7 132213097 132213340 + 1.25 NA intron (NM_020911, intron 9 of 31) L1MB3|LINE|L1 -47643 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 190.25-27 chr21 19523875 19524173 + 1.25 NA Intergenic Intergenic 375731 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 184.75-9 chr10 37994102 37994349 + 1.25 NA Intergenic Intergenic -16425 NM_001278178 7581 Hs.435774 NM_006954 ENSG00000189180 ZNF33A KOX2|KOX31|KOX5|NF11A|ZNF11|ZNF11A|ZNF33|ZZAPK zinc finger protein 33A protein-coding 305.5-7 chr16 80913688 80914141 + 1.25 NA Intergenic Intergenic -21318 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 209.5-41 chr5 138461213 138461501 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -4122 NM_001964 1958 Hs.326035 NM_001964 ENSG00000120738 EGR1 AT225|G0S30|KROX-24|NGFI-A|TIS8|ZIF-268|ZNF225 early growth response 1 protein-coding 140.25-62 chr4 45274754 45274921 + 1.25 NA Intergenic GA-rich|Low_complexity|Low_complexity -548203 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 345-13 chr8 122097947 122098420 + 1.25 NA Intergenic Intergenic -456743 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 272-7 chr12 112118659 112118939 + 1.25 NA Intergenic AluY|SINE|Alu -6746 NM_001143906 10906 Hs.5148 NM_006700 ENSG00000135148 TRAFD1 FLN29 TRAF-type zinc finger domain containing 1 protein-coding 216.25-27 chr4 70130795 70131179 + 1.25 NA Intergenic L2a|LINE|L2 -2617 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 165.75-13 chr11 29781962 29782217 + 1.25 NA Intergenic MIRc|SINE|MIR 163287 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 158-38 chr22 33967057 33967236 + 1.25 NA Intergenic Intergenic -44258 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 195.25-10 chr11 38276195 38276397 + 1.25 NA Intergenic L1MEg|LINE|L1 337695 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 194.75-56 chr9 121030200 121030417 + 1.25 NA intron (NM_001735, intron 7 of 40) intron (NM_001735, intron 7 of 40) 19967 NM_001317164 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 279.5 chr10 109079649 109079973 + 1.25 NA Intergenic L1M4|LINE|L1 843435 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 205.75-30 chr3 144027964 144028226 + 1.25 NA Intergenic L2a|LINE|L2 55014 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 117.25-98 chr9 20811102 20811306 + 1.25 NA intron (NM_017794, intron 13 of 45) L2c|LINE|L2 24277 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 215-47 chr9 106985861 106986277 + 1.25 NA intron (NM_001347997, intron 10 of 12) intron (NM_001347997, intron 10 of 12) 116919 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 187.5-62 chr5 163773726 163774130 + 1.25 NA Intergenic Intergenic 268309 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 117-19 chr12 54239193 54239336 + 1.25 NA 3' UTR (NM_001127321, exon 5 of 5) 3' UTR (NM_001127321, exon 5 of 5) -7788 NR_039851 100616400 NR_039851 ENSG00000283803 MIR3198-2 mir-3198-2 microRNA 3198-2 ncRNA 294-8 chr2 75701684 75701965 + 1.25 NA TTS (NM_001201335) TTS (NM_001201335) 9091 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 204.25-55 chr9 13372144 13372356 + 1.25 NA Intergenic Intergenic 59079 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 160-21 chr2 145749230 145749414 + 1.25 NA Intergenic Intergenic -837735 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 215.75-26 chr8 65451304 65451722 + 1.25 NA Intergenic Intergenic 111153 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 150-62 chr5 11131968 11132168 + 1.25 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -370834 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 153.75-58 chr4 118275332 118275457 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -3368 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 260-8 chr15 53538979 53539249 + 1.25 NA intron (NM_182758, intron 18 of 19) L1M8|LINE|L1 1738 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 142-51 chr5 6375402 6375595 + 1.25 NA intron (NM_032286, intron 2 of 3) intron (NM_032286, intron 2 of 3) 3049 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 223.75-28 chrX 154906675 154906861 + 1.25 NA intron (NM_000132, intron 14 of 25) L2a|LINE|L2 -19310 NR_036260 100422977 NR_036260 ENSG00000221603 MIR1184-3 - microRNA 1184-3 ncRNA 180.75-24 chr14 57210927 57211105 + 1.25 NA intron (NM_006544, intron 15 of 17) Tigger4|DNA|TcMar-Tigger 57889 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 224.75-13 chr2 166128367 166128671 + 1.25 NA promoter-TSS (NM_001353954) promoter-TSS (NM_001353954) -499 NM_001353955 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 157-5 chr1 218167875 218168033 + 1.25 NA Intergenic Intergenic -117339 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 288-14 chr4 56663363 56663650 + 1.25 NA intron (NM_032495, intron 1 of 3) AluSx3|SINE|Alu -6984 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 229-9 chr11 72979716 72980088 + 1.25 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 162416 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 172.25-31 chr2 16211675 16211967 + 1.25 NA Intergenic MER39|LTR|ERV1 161394 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 236.5-45 chr8 11207286 11207649 + 1.25 NA Intergenic Intergenic -5634 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 177-12 chr13 62262955 62263160 + 1.25 NA Intergenic L1MA4|LINE|L1 50775 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 250.5-27 chr5 31401377 31401768 + 1.25 NA intron (NM_013235, intron 34 of 34) intron (NM_013235, intron 34 of 34) 130521 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 255.75-13 chr2 52992183 52992587 + 1.25 NA Intergenic Intergenic -289770 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 122.5-89 chr7 8810976 8811132 + 1.25 NA Intergenic Intergenic 377445 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 142-18 chr13 107140542 107140769 + 1.25 NA Intergenic Intergenic 180308 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 187.5-40 chr2 138419834 138420072 + 1.25 NA Intergenic Intergenic -81817 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 318.75-11 chr3 59408035 59408520 + 1.25 NA Intergenic L3b|LINE|CR1 250220 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 203-12 chr14 50675960 50676418 + 1.25 NA Intergenic HAL1|LINE|L1 -7883 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 119.75-25 chr14 51985167 51985311 + 1.25 NA Intergenic Intergenic -4307 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 132.25-2 chr1 160640398 160640554 + 1.25 NA intron (NM_001330754, intron 1 of 7) intron (NM_001330754, intron 1 of 7) 6568 NR_104401 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 189.5-8 chr11 59874689 59874884 + 1.25 NA Intergenic L2b|LINE|L2 -8299 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 114.75-73 chr4 104409901 104410025 + 1.25 NA Intergenic Intergenic -81002 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 202.25-13 chr16 57240924 57241161 + 1.25 NA TTS (NM_001305163) TTS (NM_001305163) -4217 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 177.25-38 chr4 179949857 179950037 + 1.25 NA Intergenic Intergenic 1209202 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 226-24 chr4 188926949 188927224 + 1.25 NA Intergenic LTR62|LTR|ERVL 150429 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 158.5-9 chr1 215229565 215229833 + 1.25 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 146962 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 214.75-4 chr10 44839357 44839694 + 1.25 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -71791 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 138.5-28 chr13 80371740 80371862 + 1.25 NA Intergenic Tigger9b|DNA|TcMar-Tigger -30675 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 365-3 chr17 71382213 71382709 + 1.25 NA Intergenic Intergenic -180282 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 225.75-24 chr7 21101019 21101347 + 1.25 NA Intergenic Intergenic 265752 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 228 chr1 163163228 163163545 + 1.25 NA intron (NR_110699, intron 2 of 3) intron (NR_110699, intron 2 of 3) 1711 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 213.25-35 chr7 90722542 90722783 + 1.25 NA intron (NM_001287136, intron 1 of 13) Charlie22a|DNA|hAT-Charlie 12846 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 125.5-101 chr5 2274594 2274740 + 1.25 NA Intergenic Intergenic 37534 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 331-8 chr17 44776911 44777223 + 1.25 NA intron (NM_001318933, intron 20 of 26) intron (NM_001318933, intron 20 of 26) 18079 NM_002390 4185 Hs.6088 NM_002390 ENSG00000073670 ADAM11 MDC ADAM metallopeptidase domain 11 protein-coding 209.25-17 chr2 41671147 41671410 + 1.25 NA Intergenic MIR|SINE|MIR -206277 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 118.5-28 chr12 11695408 11695566 + 1.25 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 45633 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 144.5-5 chr1 112880175 112880361 + 1.25 NA Intergenic LTR54|LTR|ERV1 -1782 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 286.75-14 chr9 28282814 28283229 + 1.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 436284 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 214.75-31 chr5 32381697 32381943 + 1.25 NA intron (NM_016107, intron 15 of 19) intron (NM_016107, intron 15 of 19) 12655 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 193.5-33 chr2 236122150 236122407 + 1.25 NA intron (NM_001037131, intron 17 of 17) MLT1B|LTR|ERVL-MaLR 46108 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 131.25-78 chr6 144026035 144026228 + 1.25 NA intron (NM_001289040, intron 1 of 5) intron (NM_001289040, intron 1 of 5) -17401 NR_002768 57061 Hs.657760 NR_002768 ENSG00000283122 HYMAI NCRNA00020 hydatidiform mole associated and imprinted ncRNA 168 chr1 26474073 26474237 + 1.25 NA intron (NM_005517, intron 4 of 5) intron (NM_005517, intron 4 of 5) 1715 NM_005517 3151 Hs.181163 NM_005517 ENSG00000198830 HMGN2 HMG17 high mobility group nucleosomal binding domain 2 protein-coding 136-74 chrX 99844112 99844395 + 1.25 NA Intergenic MIRb|SINE|MIR 566020 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 253.25-18 chr3 56547157 56547522 + 1.25 NA Intergenic Intergenic -9817 NM_001353153 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 276-17 chr5 56960148 56960391 + 1.25 NA Intergenic Intergenic -8139 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 176.5-56 chr20 23323490 23323665 + 1.25 NA Intergenic LTR56|LTR|ERV1 -27214 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 118.75-83 chr5 44982182 44982361 + 1.25 NA Intergenic Intergenic 173324 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 170.75-70 chr8 79960171 79960333 + 1.25 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 70007 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 200.75-42 chr8 38315866 38316046 + 1.25 NA TTS (NM_017778) TTS (NM_017778) -46724 NM_001354454 84513 Hs.567619 NM_032483 ENSG00000147535 PLPP5 DPPL1|HTPAP|PPAPDC1B phospholipid phosphatase 5 protein-coding 237-26 chr4 82046565 82046852 + 1.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR 327283 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 124.5-79 chr4 65904972 65905159 + 1.25 NA Intergenic L1MC5a|LINE|L1 -234570 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 227.25-24 chr2 205712487 205712718 + 1.25 NA intron (NM_018534, intron 2 of 15) intron (NM_018534, intron 2 of 15) 30101 NM_201279 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 321.5-4 chr12 19785292 19785647 + 1.25 NA Intergenic L1PA16|LINE|L1 -229216 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 234-9 chr10 115723125 115723429 + 1.25 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 471512 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 328.75-3 chr3 6280315 6280802 + 1.25 NA Intergenic L2a|LINE|L2 524891 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 271-6 chr12 41477689 41478028 + 1.25 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 40119 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 277-19 chr4 169034038 169034419 + 1.25 NA Intergenic L1MC|LINE|L1 -23973 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 214.25-23 chr21 15670964 15671302 + 1.25 NA Intergenic Helitron1Na_Mam|RC|Helitron -58801 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 195.25-49 chr8 117821951 117822240 + 1.25 NA intron (NM_000127, intron 5 of 10) intron (NM_000127, intron 5 of 10) 98818 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 381.25-3 chr7 48589033 48589543 + 1.25 NA intron (NM_152701, intron 57 of 61) intron (NM_152701, intron 57 of 61) -335259 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 304.75 chr13 40212675 40213093 + 1.25 NA intron (NR_033877, intron 1 of 5) MLT1J1|LTR|ERVL-MaLR 7618 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 232.25-19 chr21 28917417 28917638 + 1.25 NA Intergenic AluSz|SINE|Alu -32154 NM_182749 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 219.25-7 chr10 84146518 84146877 + 1.25 NA intron (NM_014394, intron 5 of 8) intron (NM_014394, intron 5 of 8) 7188 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 213.5-30 chr2 228883214 228883402 + 1.25 NA Intergenic Intergenic -271913 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 234.5-39 chr7 88493145 88493526 + 1.25 NA Intergenic Intergenic -186441 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 136-48 chr3 45356036 45356162 + 1.25 NA Intergenic Intergenic -32477 NM_001368263 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 172.5-32 chr2 105717050 105717313 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -27731 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 200-44 chr7 47334468 47334780 + 1.25 NA intron (NM_022748, intron 20 of 30) AluSc|SINE|Alu 130179 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 204.75-45 chr7 113003749 113004101 + 1.25 NA Intergenic L2a|LINE|L2 -8282 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 138.25-66 chr4 70159085 70159253 + 1.25 NA intron (NM_214711, intron 3 of 4) L1ME1|LINE|L1 4932 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 221-37 chr5 45193317 45193775 + 1.25 NA Intergenic Intergenic 384599 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 140.75-34 chr2 181398381 181398543 + 1.25 NA non-coding (NR_130784, exon 5 of 5) non-coding (NR_130784, exon 5 of 5) -58430 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 214.25-17 chr2 36174685 36174992 + 1.25 NA Intergenic Intergenic 180732 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 143.5-52 chr2 65299337 65299507 + 1.25 NA Intergenic MLT1J2|LTR|ERVL-MaLR 67356 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 149.75-61 chr7 43372056 43372200 + 1.25 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 150414 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 238.25-20 chr4 26985877 26986177 + 1.25 NA intron (NM_001169118, intron 3 of 12) MIR|SINE|MIR 125186 NM_020860 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 212.5-25 chr2 23262384 23262700 + 1.25 NA Intergenic HAL1b|LINE|L1 -122637 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 158.25-53 chr5 108320997 108321242 + 1.25 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 60979 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 189.25-13 chr14 71249631 71249873 + 1.25 NA Intergenic AluSx1|SINE|Alu -70724 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 223-4 chr1 152169285 152169537 + 1.25 NA Intergenic Intergenic -10183 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 197.75-37 chr4 166040405 166040636 + 1.25 NA intron (NM_012464, intron 10 of 20) intron (NM_012464, intron 10 of 20) 167283 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 154.25-24 chr12 88245592 88245767 + 1.25 NA Intergenic Intergenic 103372 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 241.75-25 chr6 55445910 55446116 + 1.25 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 118544 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 335.5-3 chr15 51379340 51379662 + 1.25 NA intron (NM_001330297, intron 2 of 9) intron (NM_001330297, intron 2 of 9) 2255 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 202-11 chr2 125900500 125900680 + 1.25 NA Intergenic Intergenic 217395 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 167.25-61 chr5 42608195 42608383 + 1.25 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 42425 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 200-19 chr16 10550270 10550469 + 1.25 NA intron (NM_001424, intron 1 of 4) L1MC4|LINE|L1 -22171 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 135-73 chr7 93686735 93686910 + 1.25 NA Intergenic Intergenic -30106 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 218.5-14 chr13 67765208 67765485 + 1.25 NA Intergenic Intergenic 392959 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 150.25-7 chr10 19773318 19773515 + 1.25 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -43016 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 113.5-14 chr10 43163011 43163200 + 1.25 NA intron (NR_135077, intron 5 of 8) intron (NR_135077, intron 5 of 8) 8208 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 305-25 chr9 70844563 70844867 + 1.25 NA intron (NM_001366143, intron 4 of 25) intron (NM_001366143, intron 4 of 25) 24337 NM_024971 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 156.5-43 chr20 61012420 61012696 + 1.25 NA Intergenic MER47A|DNA|TcMar-Tigger -66506 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 169.25-41 chr4 60290141 60290437 + 1.25 NA Intergenic MLT1G|LTR|ERVL-MaLR -632330 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 177.25-20 chr2 16046126 16046339 + 1.25 NA Intergenic HAL1|LINE|L1 -4195 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 193.75-47 chr9 2074639 2074853 + 1.25 NA intron (NM_001289397, intron 12 of 32) AluJb|SINE|Alu 52801 NM_001289396 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 331.5-4 chr16 81053364 81053964 + 1.25 NA 3' UTR (NM_001100873, exon 4 of 4) 3' UTR (NM_001100873, exon 4 of 4) 16466 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 176.75-28 chr20 113882 114058 + 1.25 NA Intergenic L1PA16|LINE|L1 26298 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 225.75-28 chr8 123055377 123055669 + 1.25 NA Intergenic AluSq|SINE|Alu -13100 NM_001134671 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 118-46 chr4 33342187 33342414 + 1.25 NA Intergenic Intergenic 697593 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 198-28 chr22 28070110 28070419 + 1.25 NA intron (NM_001145418, intron 12 of 22) L2b|LINE|L2 -149652 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 211.25-7 chr10 41860401 41860929 + 1.25 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 507380 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 135.75-76 chr5 93518953 93519106 + 1.25 NA intron (NR_109825, intron 5 of 8) MamRep137|DNA|TcMar? 52314 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 127.5-56 chr2 30560589 30560731 + 1.25 NA intron (NM_001304446, intron 3 of 5) intron (NM_001304446, intron 3 of 5) 113414 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 195.5-81 chr7 19008686 19008925 + 1.25 NA Intergenic L1MEd|LINE|L1 108831 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 176-15 chr13 80395633 80395910 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -54645 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 178.75-14 chr15 91138844 91139128 + 1.25 NA intron (NM_001323040, intron 2 of 12) L1MC5|LINE|L1 37190 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 184.25-50 chr7 116015169 116015373 + 1.25 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 15492 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 233-2 chr1 44035354 44035549 + 1.25 NA Intergenic Intergenic -3989 NM_001024845 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 129-51 chr4 100547650 100547845 + 1.25 NA Intergenic MLT1G1|LTR|ERVL-MaLR -29725 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 199.5-44 chr5 142026894 142027118 + 1.25 NA Intergenic MLT2D|LTR|ERVL -13979 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 305.25-15 chr5 163897768 163898176 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 392353 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 136.25-22 chr12 128037567 128037681 + 1.25 NA Intergenic Intergenic -10458 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 193-49 chr8 133956213 133956451 + 1.25 NA Intergenic MIRb|SINE|MIR 69836 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 168-39 chr2 77705850 77706081 + 1.25 NA Intergenic Intergenic -183532 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 159.5-6 chr1 200589836 200589995 + 1.25 NA intron (NM_014875, intron 17 of 29) AluJb|SINE|Alu 28923 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 213-49 chr8 115652793 115653005 + 1.25 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 15114 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 228.75-7 chr11 75950607 75950896 + 1.25 NA intron (NM_003369, intron 6 of 14) L1ME2|LINE|L1 135541 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 178-8 chr11 26796381 26796636 + 1.25 NA Intergenic Intergenic -74448 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 191.75-2 chr10 37362470 37362629 + 1.25 NA Intergenic Intergenic 53363 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 301.75-16 chr8 133064728 133065017 + 1.25 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -4518 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 190.25-31 chr22 40505790 40506038 + 1.25 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -15886 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 183-36 chr2 221710577 221710760 + 1.25 NA Intergenic Intergenic -136466 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 241.5-21 chr2 196279798 196280148 + 1.25 NA intron (NM_020760, intron 14 of 28) intron (NM_020760, intron 14 of 28) 19949 NR_110226 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 139.25-58 chr3 99251903 99252038 + 1.25 NA Intergenic Intergenic -350275 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 132.5-9 chr10 52897264 52897417 + 1.25 NA Intergenic L2b|LINE|L2 -125640 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 268-13 chr2 20878710 20879053 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity -55751 NM_001282723 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 285.5-7 chr2 30549244 30549523 + 1.25 NA intron (NM_182551, intron 4 of 6) intron (NM_182551, intron 4 of 6) 102137 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 145-40 chr2 218800513 218800684 + 1.25 NA intron (NM_000784, intron 1 of 8) L1ME4a|LINE|L1 18451 NM_000784 1593 Hs.516700 NM_000784 ENSG00000135929 CYP27A1 CP27|CTX|CYP27 cytochrome P450 family 27 subfamily A member 1 protein-coding 207.75-6 chr10 84568792 84569297 + 1.25 NA Intergenic L1ME3G|LINE|L1 143875 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 208.25-40 chr7 26258423 26258617 + 1.25 NA Intergenic MER4B-int|LTR|ERV1 -33358 NM_001362754 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 205-47 chrX 30100770 30101033 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR -114662 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 170.5-25 chr13 58894639 58894897 + 1.25 NA Intergenic L1ME3E|LINE|L1 -661651 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 195-53 chr7 25382105 25382345 + 1.25 NA Intergenic Intergenic -153739 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 181-6 chr10 26541816 26541995 + 1.25 NA intron (NM_019043, intron 11 of 14) intron (NM_019043, intron 11 of 14) 37402 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 268.75-20 chr3 16111867 16112143 + 1.25 NA Intergenic MLT1M|LTR|ERVL-MaLR -62675 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 198-14 chr12 110826994 110827257 + 1.25 NA Intergenic Intergenic -19862 NM_001286243 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 225.75-6 chr1 232831062 232831404 + 1.25 NA Intergenic Intergenic 26341 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 197-5 chr10 65871217 65871418 + 1.25 NA Intergenic L1MC3|LINE|L1 299892 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 202.25-8 chr12 14930264 14930439 + 1.25 NA intron (NM_152321, intron 3 of 6) intron (NM_152321, intron 3 of 6) -1226 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 404.5-4 chr8 140421020 140421786 + 1.25 NA intron (NM_001321646, intron 4 of 21) intron (NM_001321646, intron 4 of 21) 36341 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 179.5-29 chr13 91194014 91194232 + 1.25 NA intron (NR_047004, intron 1 of 3) intron (NR_047004, intron 1 of 3) 17575 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 201.75-33 chr6 83385232 83385546 + 1.25 NA intron (NM_002395, intron 3 of 13) intron (NM_002395, intron 3 of 13) 45662 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 151.25-56 chr8 86050796 86051032 + 1.25 NA intron (NM_033126, intron 2 of 2) FLAM_C|SINE|Alu 18754 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 191.5-2 chr1 45794237 45794429 + 1.25 NA Intergenic MER1B|DNA|hAT-Charlie -9274 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 274.5-2 chr10 103182089 103182419 + 1.25 NA intron (NM_001351187, intron 1 of 21) intron (NM_001351187, intron 1 of 21) -5197 NM_001351179 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 146.75-13 chr13 79191876 79192083 + 1.25 NA Intergenic Intergenic 214242 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 150.75-63 chr6 160593842 160594012 + 1.25 NA intron (NM_005577, intron 22 of 38) intron (NM_005577, intron 22 of 38) 70332 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 273.25-17 chr8 79637346 79637673 + 1.25 NA intron (NM_007029, intron 2 of 4) MIR|SINE|MIR 26392 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 325.5-10 chr5 158704653 158705192 + 1.25 NA intron (NM_001324107, intron 15 of 15) intron (NM_001324107, intron 15 of 15) -295149 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 178.75-48 chr5 99798937 99799249 + 1.25 NA Intergenic Intergenic 265103 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 128-44 chr3 195393369 195393568 + 1.25 NA intron (NM_012287, intron 1 of 22) intron (NM_012287, intron 1 of 22) 49552 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 189-53 chr8 134045908 134046178 + 1.25 NA Intergenic AluSx4|SINE|Alu 159547 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 172.75-12 chr15 87912088 87912334 + 1.25 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 34057 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 243.5-17 chr4 33391490 33391951 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 648173 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 200.75-25 chr2 190338991 190339269 + 1.25 NA Intergenic AluJr|SINE|Alu -4459 NM_002194 3628 Hs.32309 NM_002194 ENSG00000151689 INPP1 - inositol polyphosphate-1-phosphatase protein-coding 231.25-37 chr8 49827430 49827662 + 1.25 NA Intergenic Intergenic -82250 NM_001287813 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 228.5-25 chr20 52025014 52025366 + 1.25 NA Intergenic AluSp|SINE|Alu 80294 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 195-55 chr7 39688881 39689120 + 1.25 NA intron (NM_005402, intron 2 of 4) MSTA|LTR|ERVL-MaLR -44568 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 143-48 chr3 40752693 40752924 + 1.25 NA Intergenic Intergenic 227848 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 220.25-20 chr2 39856858 39857034 + 1.25 NA Intergenic Intergenic -60688 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 167.75-37 chr2 199191218 199191472 + 1.25 NA Intergenic Intergenic 266594 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 128.25-71 chr6 89446382 89446502 + 1.25 NA intron (NM_001242809, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 13264 NM_001242813 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 225.75-15 chr3 28504280 28504480 + 1.25 NA intron (NM_001040432, intron 6 of 9) intron (NM_001040432, intron 6 of 9) -70898 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 230-9 chr17 79061593 79061853 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -13214 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 195-46 chr5 105817102 105817314 + 1.25 NA Intergenic Intergenic 717734 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 295.75-3 chr10 4488038 4488468 + 1.25 NA Intergenic ERVL-int|LTR|ERVL 81784 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 185-29 chr3 131229879 131230093 + 1.25 NA intron (NM_001353043, intron 15 of 17) intron (NM_001353043, intron 15 of 17) -131859 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 218.5-49 chr7 38491840 38492118 + 1.25 NA intron (NM_001635, intron 4 of 20) MIRc|SINE|MIR 139394 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 199.25-13 chr14 31986217 31986420 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 41465 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 130.75-49 chr20 14740884 14741002 + 1.25 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 186559 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 275.25-13 chr19 37460935 37461352 + 1.25 NA intron (NM_001330482, intron 2 of 4) L1MC5|LINE|L1 6301 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 158.5-5 chr1 106990096 106990365 + 1.25 NA Intergenic L1PB2|LINE|L1 -66444 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 121.25-55 chr5 83995471 83995669 + 1.25 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -274715 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 137-44 chr22 40870573 40870711 + 1.25 NA intron (NM_022098, intron 2 of 9) intron (NM_022098, intron 2 of 9) -8529 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 192-48 chr7 11626309 11626598 + 1.25 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 205745 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 204.5-15 chr14 57199442 57199808 + 1.25 NA TTS (NM_006544) TTS (NM_006544) 69280 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 234.75 chr1 95783776 95784090 + 1.25 NA Intergenic L1ME4a|LINE|L1 -208135 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 174.25-43 chr4 122034221 122034509 + 1.25 NA Intergenic Intergenic -82305 NM_001366479 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 216.25-3 chr1 102302134 102302385 + 1.25 NA Intergenic HAL1|LINE|L1 -305025 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 188-23 chr2 99935210 99935476 + 1.25 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 170240 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 188-17 chr18 64141834 64142125 + 1.25 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) 7047 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 148.75-18 chr15 43304580 43304726 + 1.25 NA Intergenic Intergenic -2398 NM_052955 116179 Hs.164661 NM_052955 ENSG00000159495 TGM7 TGMZ transglutaminase 7 protein-coding 271.5-2 chr12 1548109 1548539 + 1.25 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -16132 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 319.25-3 chr13 102049183 102049615 + 1.25 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -3395 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 162.75-28 chr16 83565660 83565947 + 1.25 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 57457 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 113-94 chr7 53585398 53585518 + 1.25 NA Intergenic Intergenic 226473 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 137.5-96 chr5 110455834 110455964 + 1.25 NA intron (NM_001039763, intron 12 of 13) L1ME1|LINE|L1 58016 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 199.5-53 chr7 42146719 42146878 + 1.25 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 90411 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 299.75-3 chr12 8028985 8029273 + 1.25 NA Intergenic L1MC5|LINE|L1 -3587 NM_018416 55810 Hs.120844 NM_018416 ENSG00000065970 FOXJ2 FHX forkhead box J2 protein-coding 152.5-24 chr11 107696065 107696363 + 1.25 NA Intergenic MIRb|SINE|MIR 15842 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 195-32 chr20 19218195 19218439 + 1.25 NA intron (NM_020689, intron 1 of 16) MIRb|SINE|MIR 5675 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 189-32 chr20 55746032 55746323 + 1.25 NA Intergenic L1MC5|LINE|L1 259342 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 144-35 chr20 9142064 9142231 + 1.25 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 73093 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 283.5-6 chr12 130246856 130247117 + 1.25 NA Intergenic Intergenic 84527 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 272.75-5 chr10 12862434 12862773 + 1.25 NA Intergenic MER63A|DNA|hAT-Blackjack -137250 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 131.25-86 chr8 59905683 59905806 + 1.25 NA Intergenic Intergenic 375656 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 181.25-43 chr4 48677743 48677979 + 1.25 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 102438 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 145.5-49 chr2 114752538 114752694 + 1.25 NA intron (NM_001321910, intron 2 of 26) MER5A|DNA|hAT-Charlie 80932 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 165-23 chr16 28864791 28864937 + 1.25 NA 5' UTR (NM_015503, exon 1 of 9) 5' UTR (NM_015503, exon 1 of 9) 871 NM_015503 25970 Hs.15744 NM_015503 ENSG00000178188 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 169.75-13 chr11 103732165 103732326 + 1.25 NA Intergenic Intergenic -117661 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 130.5-7 chr1 168411420 168411612 + 1.25 NA intron (NR_037851, intron 3 of 3) L2b|LINE|L2 11140 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 175.75-46 chr8 79052370 79052515 + 1.25 NA Intergenic Intergenic 214913 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 191.75-12 chr14 62071108 62071373 + 1.25 NA intron (NM_001367661, intron 5 of 8) intron (NM_001367661, intron 5 of 8) -46117 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 187.5-43 chr2 155086273 155086528 + 1.25 NA Intergenic L1PA15|LINE|L1 387705 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 144.5-90 chr5 114976238 114976423 + 1.25 NA Intergenic Intergenic 193578 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 246.25-16 chr20 2071788 2072036 + 1.25 NA Intergenic L1MCa|LINE|L1 -29915 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 210-33 chr6 117405498 117405739 + 1.25 NA intron (NM_002944, intron 4 of 42) intron (NM_002944, intron 4 of 42) 20237 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 139.25-41 chr17 43555642 43555888 + 1.25 NA Intergenic Intergenic -9425 NM_001261437 2118 Hs.434059 NM_001986 ENSG00000175832 ETV4 E1A-F|E1AF|PEA3|PEAS3 ETS variant 4 protein-coding 115.5-85 chr7 3219695 3219826 + 1.25 NA Intergenic L1MEi|LINE|L1 -61187 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 310.75-5 chr15 60543878 60544231 + 1.25 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 48472 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 225-3 chr1 62939556 62939739 + 1.25 NA Intergenic Intergenic 71278 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 235-31 chr4 47771516 47771871 + 1.25 NA intron (NM_001278585, intron 2 of 19) L1PA13|LINE|L1 -59652 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 116.75-32 chr17 72239204 72239401 + 1.25 NA Intergenic MLT1F2|LTR|ERVL-MaLR -103509 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 124-42 chr4 6505186 6505349 + 1.25 NA intron (NM_001206994, intron 2 of 9) L1ME2|LINE|L1 -32653 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 174.25-39 chr3 22022519 22022661 + 1.25 NA Intergenic Intergenic 65451 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 183.5-55 chr4 96274554 96274773 + 1.25 NA Intergenic Intergenic -36040 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 237-33 chr5 178213405 178213662 + 1.25 NA intron (NR_103508, intron 7 of 9) intron (NR_103508, intron 7 of 9) 9000 NM_004499 3182 Hs.591731 NM_004499 ENSG00000197451 HNRNPAB ABBP1|HNRPAB heterogeneous nuclear ribonucleoprotein A/B protein-coding 273-2 chr1 216133967 216134243 + 1.25 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 61640 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 245.5 chr1 199685644 199685950 + 1.25 NA Intergenic Intergenic -341913 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 159-59 chr7 96982934 96983111 + 1.25 NA intron (NR_015448, intron 1 of 2) intron (NR_015448, intron 1 of 2) -22531 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 238.75-15 chr6 36353788 36354184 + 1.25 NA TTS (NM_001207039) TTS (NM_001207039) -17098 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 167.75-56 chr5 126407917 126408232 + 1.25 NA intron (NM_001146319, intron 1 of 13) L1PA16|LINE|L1 -15072 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 149.25-40 chr3 9052080 9052315 + 1.25 NA intron (NM_014850, intron 9 of 21) L3|LINE|CR1 -88725 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 127-61 chr3 79042880 79043052 + 1.25 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -23507 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 140-11 chr11 38081736 38081875 + 1.25 NA Intergenic Intergenic 143204 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 242-15 chr14 54305804 54306205 + 1.25 NA Intergenic Intergenic -90864 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 284.75-6 chr17 34658097 34658514 + 1.25 NA Intergenic AluJb|SINE|Alu 77556 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 180-61 chr6 156737976 156738416 + 1.25 NA Intergenic Intergenic -39659 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 227.5-39 chr4 86358950 86359217 + 1.25 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 970 NM_001351625 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 190-37 chr3 148828104 148828373 + 1.25 NA intron (NM_001871, intron 2 of 10) intron (NM_001871, intron 2 of 10) 427 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 142.25-43 chr3 36967638 36967766 + 1.25 NA Intergenic HAL1ME|LINE|L1 -22648 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 133.75-39 chr2 49259197 49259355 + 1.25 NA Intergenic L1ME3B|LINE|L1 -104749 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 206-18 chr2 173213509 173213805 + 1.25 NA intron (NR_033882, intron 4 of 7) MIR|SINE|MIR 68379 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 310.75-3 chr11 44908991 44909267 + 1.25 NA intron (NM_130783, intron 4 of 9) intron (NM_130783, intron 4 of 9) 41031 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 194.75-44 chr7 129852510 129852767 + 1.25 NA intron (NM_182697, intron 3 of 4) intron (NM_182697, intron 3 of 4) -77624 NR_029615 406959 NR_029615 ENSG00000207691 MIR183 MIRN183|miR-183|miRNA183 microRNA 183 ncRNA 125.25-12 chr10 116638550 116638668 + 1.25 NA intron (NR_103727, intron 11 of 12) MIR3|SINE|MIR 17656 NM_005396 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 192.25-6 chr1 186305310 186305522 + 1.25 NA intron (NM_005807, intron 6 of 12) intron (NM_005807, intron 6 of 12) 9143 NM_001127708 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 158.5-80 chr4 65342323 65342459 + 1.25 NA intron (NM_001281767, intron 15 of 16) intron (NM_001281767, intron 15 of 16) 327097 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 261-38 chr5 144569786 144570068 + 1.25 NA Intergenic L1M1|LINE|L1 364536 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 144.5-60 chr20 20100612 20100814 + 1.25 NA intron (NM_015585, intron 8 of 26) intron (NM_015585, intron 8 of 26) 44067 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 161.75-25 chr2 32002303 32002549 + 1.25 NA intron (NR_126034, intron 1 of 6) (AT)n|Simple_repeat|Simple_repeat 8238 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 139.75-44 chr2 152787222 152787382 + 1.25 NA Intergenic MER4A1|LTR|ERV1 68665 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 140-55 chr6 17649095 17649259 + 1.25 NA exon (NM_001278209, exon 13 of 23) exon (NM_001278209, exon 13 of 23) 48875 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 173.25-37 chr21 32349737 32349911 + 1.25 NA intron (NM_014825, intron 20 of 38) AluSq2|SINE|Alu 27498 NR_002996 677846 Hs.712293 NR_002996 ENSG00000200792 SNORA80A ACA67|SNORA80 small nucleolar RNA, H/ACA box 80A snoRNA 209-6 chr12 16456914 16457244 + 1.25 NA Intergenic Intergenic 103662 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 185-38 chr6 120969031 120969301 + 1.25 NA Intergenic L1MA7|LINE|L1 365314 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 154-22 chr14 73867371 73867738 + 1.25 NA intron (NM_001371328, intron 3 of 8) intron (NM_001371328, intron 3 of 8) 15607 NM_152444 145482 Hs.632344 NM_152444 ENSG00000140043 PTGR2 HEL-S-298|PGR2|ZADH1 prostaglandin reductase 2 protein-coding 148.5-42 chr18 8265798 8265937 + 1.25 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 101167 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 158.75-41 chr21 27530031 27530254 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR -192237 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 202-9 chr17 72683537 72683863 + 1.25 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -43228 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 161-67 chr8 118078951 118079215 + 1.25 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 32736 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 128.75-24 chr14 46115734 46115925 + 1.25 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 51670 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 223.5-71 chr6 156410444 156410872 + 1.25 NA Intergenic Charlie4a|DNA|hAT-Charlie 31908 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 170-30 chr3 60891214 60891414 + 1.25 NA intron (NR_148922, intron 3 of 3) MLT1K|LTR|ERVL-MaLR -273444 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 176.75-4 chr10 6405262 6405438 + 1.25 NA intron (NM_001323267, intron 17 of 17) intron (NM_001323267, intron 17 of 17) 55034 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 258.75-13 chr16 380055 380371 + 1.25 NA intron (NM_021259, intron 1 of 12) intron (NM_021259, intron 1 of 12) 1765 NM_021259 58986 Hs.288940 NM_021259 ENSG00000129925 TMEM8A GPI-PLA2|M83|PGAP6|TMEM6|TMEM8 transmembrane protein 8A protein-coding 143.5-29 chr13 46584069 46584288 + 1.25 NA intron (NM_001164213, intron 1 of 18) intron (NM_001164213, intron 1 of 18) 31008 NM_015116 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 148-66 chr8 106245617 106245769 + 1.25 NA Intergenic Charlie3|DNA|hAT-Charlie -24485 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 197.25-15 chr11 48251139 48251452 + 1.25 NA Intergenic L1MEg|LINE|L1 6191 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 243-13 chr2 128150806 128151087 + 1.25 NA intron (NR_027671, intron 18 of 40) AluSx1|SINE|Alu 59746 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 128-23 chr19 35723930 35724169 + 1.25 NA intron (NM_014727, intron 8 of 36) intron (NM_014727, intron 8 of 36) 6030 NM_014727 9757 Hs.92236 NM_014727 ENSG00000272333 KMT2B CXXC10|DYT28|HRX2|MLL1B|MLL2|MLL4|TRX2|WBP-7|WBP7 lysine methyltransferase 2B protein-coding 187.25-24 chr16 75776628 75776891 + 1.25 NA Intergenic L1MA4|LINE|L1 -50269 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 141.75-58 chr4 73742417 73742730 + 1.25 NA TTS (NM_001354840) TTS (NM_001354840) 2004 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 292.75-9 chr3 14819760 14820118 + 1.25 NA exon (NM_001320276, exon 1 of 19) exon (NM_001320276, exon 1 of 19) 977 NM_152536 152273 Hs.412406 NM_152536 ENSG00000154783 FGD5 ZFYVE23 FYVE, RhoGEF and PH domain containing 5 protein-coding 241-17 chr2 9921192 9921395 + 1.25 NA intron (NM_001318977, intron 13 of 13) AluJo|SINE|Alu -30400 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 114-55 chr22 33780696 33780869 + 1.25 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 55796 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 159.25-58 chr5 166290022 166290322 + 1.25 NA Intergenic Tigger8|DNA|TcMar-Tigger 636198 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 169.75-43 chr3 145580456 145580742 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 488586 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 236.25-36 chr6 71133247 71133457 + 1.25 NA Intergenic L1MEf|LINE|L1 -155459 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 232.75-4 chr10 75646819 75647211 + 1.25 NA promoter-TSS (NR_131178) promoter-TSS (NR_131178) -494 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 178-31 chr22 21799322 21799510 + 1.25 NA intron (NM_002745, intron 3 of 8) intron (NM_002745, intron 3 of 8) -63622 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 141.5-58 chr2 80824788 80824964 + 1.25 NA Intergenic L1M5|LINE|L1 511497 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 286.25-6 chr18 32191515 32191820 + 1.25 NA intron (NM_005925, intron 1 of 14) intron (NM_005925, intron 1 of 14) 1628 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 257.5-10 chr14 67979789 67980191 + 1.25 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 156398 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 213-25 chr2 232731267 232731455 + 1.25 NA intron (NR_103493, intron 5 of 6) intron (NR_103493, intron 5 of 6) -3056 NR_103492 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 200.25-18 chr13 92210520 92210758 + 1.25 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 141568 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 231.25-28 chr3 178518302 178518728 + 1.25 NA Intergenic Intergenic -17921 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 148.75-34 chr2 75479167 75479410 + 1.25 NA Intergenic L2c|LINE|L2 -44780 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 161.5-57 chr3 96695020 96695223 + 1.25 NA Intergenic L1MA2|LINE|L1 -119473 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 139.5-7 chr10 14633778 14633969 + 1.25 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -29472 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 157.75-71 chr7 54375007 54375345 + 1.25 NA Intergenic L2|LINE|L2 44479 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 247-17 chr2 104208162 104208378 + 1.25 NA Intergenic Intergenic 200062 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 248.25-25 chr3 138247762 138248084 + 1.25 NA intron (NM_001282342, intron 10 of 19) L2a|LINE|L2 60392 NM_015396 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 160.25-10 chr11 82337081 82337229 + 1.25 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 66758 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 149-15 chr15 33382643 33382843 + 1.25 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 71776 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 176.25-43 chr3 68819954 68820178 + 1.25 NA intron (NM_001005527, intron 3 of 5) L1MA8|LINE|L1 112481 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 281.5-14 chr4 78876979 78877269 + 1.25 NA intron (NM_017593, intron 13 of 13) Tigger3b|DNA|TcMar-Tigger 62314 NR_146465 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 300-11 chr16 59189632 59190064 + 1.25 NA Intergenic MIRb|SINE|MIR -455532 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 135.75-66 chr3 151989654 151989781 + 1.25 NA Intergenic Tigger8|DNA|TcMar-Tigger -61542 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 178.75-62 chr9 15235734 15236023 + 1.25 NA intron (NM_001168340, intron 2 of 18) L1PB4|LINE|L1 14340 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 168.75-31 chr21 25064086 25064496 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR 223741 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 343-12 chr9 25157770 25158202 + 1.25 NA Intergenic L1MEc|LINE|L1 520872 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 168.5 chr1 40128031 40128206 + 1.25 NA Intergenic AluJr|SINE|Alu -30648 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 224-16 chr2 191495159 191495384 + 1.25 NA Intergenic L1ME1|LINE|L1 -182801 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 174-56 chr9 101995572 101995837 + 1.25 NA Intergenic MamGypLTR1d|LTR|Gypsy -257124 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 155.75-13 chr12 77633729 77633885 + 1.25 NA Intergenic Intergenic -197087 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 119-25 chr14 60024339 60024485 + 1.25 NA intron (NR_075071, intron 27 of 32) intron (NR_075071, intron 27 of 32) -67499 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 213.5-6 chr10 97211462 97211703 + 1.25 NA intron (NR_037909, intron 11 of 14) MER5A|DNA|hAT-Charlie -25623 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 250.25-13 chr3 105710028 105710540 + 1.25 NA intron (NR_135808, intron 10 of 19) intron (NR_135808, intron 10 of 19) 157307 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 131-38 chr3 82351809 82351963 + 1.25 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 365744 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 231.5-17 chr18 48613214 48613431 + 1.25 NA intron (NM_001142397, intron 2 of 12).2 intron (NM_001142397, intron 2 of 12).2 -57278 NR_039897 100616366 NR_039897 ENSG00000266276 MIR4743 - microRNA 4743 ncRNA 257.75-15 chr2 158392343 158392854 + 1.25 NA intron (NM_138803, intron 1 of 13) Tigger4a|DNA|TcMar-Tigger 64155 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 354.75-11 chr9 13369903 13370200 + 1.25 NA Intergenic Intergenic 61278 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 270-13 chr17 70626949 70627226 + 1.25 NA Intergenic Intergenic 457552 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 169.75-44 chr3 148056110 148056381 + 1.25 NA Intergenic Intergenic -21914 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 187-4 chr12 18495150 18495327 + 1.25 NA intron (NM_001288774, intron 20 of 32) intron (NM_001288774, intron 20 of 32) 233698 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 138-44 chr2 231993695 231993919 + 1.25 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 32094 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 272-5 chr11 42068970 42069288 + 1.25 NA intron (NR_135065, intron 2 of 9) MIR|SINE|MIR 16329 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 249-5 chr10 84899933 84900256 + 1.25 NA Intergenic L1PA16|LINE|L1 298811 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 138.5-85 chr5 41234195 41234479 + 1.25 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) -20805 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 290-6 chr13 64223109 64223419 + 1.25 NA Intergenic Intergenic -147253 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 201.25-14 chr16 72699206 72699491 + 1.25 NA Intergenic Intergenic -34378 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 304.5-11 chr3 159072957 159073289 + 1.25 NA intron (NM_001197113, intron 1 of 10) ERV3-16A3_LTR|LTR|ERVL 3804 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 179.5-98 chr8 124543784 124543966 + 1.25 NA intron (NM_001311168, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 4752 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 259.75-20 chr6 72915107 72915357 + 1.25 NA intron (NM_001160132, intron 1 of 13) L3b|LINE|CR1 52521 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 273.75-12 chr4 99013020 99013347 + 1.25 NA intron (NM_015143, intron 1 of 10) intron (NM_015143, intron 1 of 10) 15796 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 139.25-28 chr14 54469008 54469207 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 19873 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 257.5-6 chr12 25516118 25516413 + 1.25 NA intron (NM_152590, intron 7 of 8) intron (NM_152590, intron 7 of 8) 37018 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 119.5-44 chr15 98380779 98381065 + 1.25 NA intron (NR_146567, intron 1 of 2) MIRb|SINE|MIR 40076 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 252.75-34 chr7 131899310 131899686 + 1.25 NA Intergenic MLT1F|LTR|ERVL-MaLR -10722 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 158-50 chr4 167187128 167187338 + 1.25 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 47193 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 286.25-9 chr2 89835481 89835833 + 1.25 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -197750 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 153-35 chr4 36836498 36836680 + 1.25 NA Intergenic Intergenic -165190 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 219.25-11 chr14 37159133 37159388 + 1.25 NA intron (NM_001171170, intron 1 of 10) L1MA4A|LINE|L1 -12766 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 183.75-49 chr7 27552957 27553300 + 1.25 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -62846 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 279.25-13 chr2 12978149 12978476 + 1.25 NA intron (NR_038434, intron 5 of 5) intron (NR_038434, intron 5 of 5) 28701 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 118.75-92 chr6 97103932 97104106 + 1.25 NA intron (NR_136579, intron 4 of 7) intron (NR_136579, intron 4 of 7) 93943 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 209.5-15 chr2 48516863 48517171 + 1.25 NA Intergenic AluJb|SINE|Alu -12908 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 238-4 chr1 183251529 183251904 + 1.25 NA 3' UTR (NM_015039, exon 11 of 11) 3' UTR (NM_015039, exon 11 of 11) 53158 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 191.25-27 chr16 60389115 60389330 + 1.25 NA Intergenic Intergenic -29429 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 316.5-6 chr19 50034139 50034536 + 1.25 NA intron (NM_015428, intron 2 of 4) L2b|LINE|L2 8332 NM_015428 25888 Hs.440553 NM_015428 ENSG00000142528 ZNF473 ZFP100|ZN473 zinc finger protein 473 protein-coding 213.75-21 chr16 3871645 3871935 + 1.25 NA intron (NM_004380, intron 1 of 30) intron (NM_004380, intron 1 of 30) 8330 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 132.75-55 chr2 55479005 55479185 + 1.25 NA Intergenic MER5A|DNA|hAT-Charlie -40500 NM_080667 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 222.25-26 chr6 35540526 35540840 + 1.25 NA Intergenic AluSz|SINE|Alu -27787 NM_001289395 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 134.25-10 chr10 82273381 82273578 + 1.25 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -40559 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 254.75-12 chr17 6172160 6172420 + 1.25 NA Intergenic Intergenic 101676 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 139.5-106 chr8 100398197 100398354 + 1.25 NA Intergenic Intergenic 15512 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 159.75-42 chr3 185364996 185365430 + 1.25 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 2077 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 241-30 chr5 165750298 165750558 + 1.25 NA Intergenic Intergenic 1175942 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 161-36 chr19 31788911 31789274 + 1.25 NA Intergenic L1ME2z|LINE|L1 196811 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 283.25-5 chr12 9927769 9928141 + 1.25 NA intron (NM_207375, intron 1 of 4) intron (NM_207375, intron 1 of 4) 4415 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 270-21 chr4 121710291 121710653 + 1.25 NA Intergenic Intergenic -13492 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 154.5-10 chr10 34123769 34124019 + 1.25 NA intron (NM_001184789, intron 21 of 22) intron (NM_001184789, intron 21 of 22) -351214 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 142.75-65 chr4 167816749 167816895 + 1.25 NA Intergenic Intergenic -275715 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 175-24 chr2 112777175 112777358 + 1.25 NA intron (NM_000575, intron 6 of 6) L2b|LINE|L2 8132 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 194.5-37 chr2 190233135 190233422 + 1.25 NA intron (NM_198047, intron 11 of 12) L1ME3A|LINE|L1 52415 NM_001042519 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 244-26 chr8 63831510 63831722 + 1.25 NA Intergenic LTR27B|LTR|ERV1 62186 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 142.75-77 chr6 131998290 131998492 + 1.25 NA Intergenic Intergenic -47019 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 167.75-68 chr8 131812927 131813087 + 1.25 NA Intergenic MIR|SINE|MIR -91086 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 125.5-45 chr14 62248964 62249079 + 1.25 NA Intergenic MIR|SINE|MIR -109048 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 209.25-40 chr6 67027788 67028058 + 1.25 NA Intergenic Intergenic -1027428 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 193.25-45 chr7 145757584 145758096 + 1.25 NA Intergenic L1PREC2|LINE|L1 -921787 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 214-17 chr14 21249842 21250027 + 1.25 NA intron (NM_001077442, intron 1 of 7) intron (NM_001077442, intron 1 of 7) 19545 NM_001077442 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 184.25-56 chr9 102494432 102494606 + 1.25 NA Intergenic Intergenic -25118 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 116.5-51 chr18 4608545 4608666 + 1.25 NA Intergenic Intergenic -153298 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 199-44 chr7 4059018 4059324 + 1.25 NA intron (NM_152744, intron 19 of 44) L1MA4A|LINE|L1 -70514 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 194-25 chr3 41167496 41167783 + 1.25 NA Intergenic Intergenic -31866 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 186.5-27 chr18 68044140 68044325 + 1.25 NA Intergenic L2c|LINE|L2 -229410 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 216-5 chr10 34548292 34548520 + 1.25 NA intron (NM_001184789, intron 2 of 22) AluSz6|SINE|Alu 266890 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 192 chr1 103025903 103026070 + 1.25 NA intron (NM_080629, intron 5 of 66) intron (NM_080629, intron 5 of 66) 82510 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 143-19 chr12 62845076 62845243 + 1.25 NA intron (NM_020700, intron 1 of 9) L3|LINE|CR1 89991 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 151.25-53 chr7 26984236 26984394 + 1.25 NA Intergenic MIRc|SINE|MIR 111685 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 141.25-60 chr5 114743086 114743250 + 1.25 NA intron (NR_130785, intron 1 of 12) L2a|LINE|L2 30245 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 178.75-21 chr16 78872619 78872805 + 1.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 728025 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 191.25-3 chr1 182524441 182524786 + 1.25 NA intron (NM_001366934, intron 11 of 22) L1M4a2|LINE|L1 64643 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 382 chr10 9248087 9248531 + 1.25 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -27304 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 295.5-21 chr5 124999536 124999909 + 1.25 NA Intergenic Intergenic -37109 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 140-70 chr9 127572585 127572829 + 1.25 NA intron (NM_001035534, intron 1 of 13) MIRb|SINE|MIR -3634 NM_022833 64855 Hs.522401 NM_022833 ENSG00000136830 NIBAN2 C9orf88|FAM129B|MEG-3|MINERVA|OC58|bA356B19.6 niban apoptosis regulator 2 protein-coding 144-22 chr12 122940555 122940689 + 1.25 NA intron (NM_001243013, intron 7 of 10) L2c|LINE|L2 25841 NM_001243014 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 234.25-36 chr8 135986510 135986741 + 1.25 NA Intergenic MLT1H2|LTR|ERVL-MaLR 529169 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 278-21 chr5 173399633 173399939 + 1.25 NA Intergenic Intergenic 52331 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 197.25-22 chr13 104413864 104414141 + 1.25 NA Intergenic Intergenic 988802 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 157-26 chr2 37859416 37859615 + 1.25 NA intron (NR_110012, intron 2 of 3) LTR1F1|LTR|ERV1 16348 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 159.5-44 chr2 163656660 163656905 + 1.25 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 79226 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 205.75-13 chr14 67356544 67356780 + 1.25 NA intron (NM_015994, intron 1 of 8) MIR3|SINE|MIR 3142 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 190.75-12 chr10 107269887 107270067 + 1.25 NA Intergenic Intergenic -105271 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 174.5-6 chr10 28918754 28919036 + 1.25 NA Intergenic L1M5|LINE|L1 72487 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 309.75-5 chr14 68029074 68029412 + 1.25 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 205651 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 344-7 chr4 115281048 115281346 + 1.25 NA Intergenic L1MA10|LINE|L1 -167577 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 121.75-25 chr15 62556047 62556205 + 1.25 NA Intergenic L1M5|LINE|L1 89055 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 139.75-65 chr7 88653194 88653401 + 1.25 NA Intergenic L1MA3|LINE|L1 -106403 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 152.75-49 chr4 52228737 52229072 + 1.25 NA Intergenic Intergenic 177600 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 172.25-79 chrX 100515586 100515918 + 1.25 NA Intergenic L1MB8|LINE|L1 -69184 NM_022144 64102 Hs.132957 NM_022144 ENSG00000000005 TNMD BRICD4|CHM1L|TEM tenomodulin protein-coding 292-8 chr2 164250604 164251019 + 1.25 NA Intergenic Intergenic 317684 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 246-16 chr3 38152820 38153239 + 1.25 NA Intergenic LTR81A|LTR|Gypsy -12508 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 253-8 chr15 60048448 60048853 + 1.25 NA Intergenic Charlie5|DNA|hAT-Charlie 44339 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 152-14 chr11 9925591 9925722 + 1.25 NA intron (NR_120539, intron 2 of 2) MER33|DNA|hAT-Charlie 86514 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 188.75-38 chr5 104797761 104798111 + 1.25 NA Intergenic Intergenic -301538 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 139-4 chr10 81582691 81582850 + 1.25 NA Intergenic Intergenic -292424 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 320.25-3 chr13 93106217 93106589 + 1.25 NA Intergenic MIRc|SINE|MIR 61062 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 225.5-40 chr5 71658639 71658986 + 1.25 NA TTS (NM_001363147) TTS (NM_001363147) -60463 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 158.25-71 chr8 141914181 141914329 + 1.25 NA Intergenic Intergenic -127942 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 169.5-91 chrX 55339191 55339412 + 1.25 NA Intergenic Intergenic 59213 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 119.25-29 chr15 83536184 83536321 + 1.25 NA intron (NM_001324186, intron 2 of 9) intron (NM_001324186, intron 2 of 9) 45638 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 236.75-23 chrX 151997705 151997988 + 1.25 NA Intergenic L1ME1|LINE|L1 -23170 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 208.75-18 chr20 16649474 16649676 + 1.25 NA Intergenic Intergenic -76127 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 154-62 chr7 56075282 56075504 + 1.25 NA intron (NM_001146333, intron 4 of 7) Charlie10|DNA|hAT-Charlie 11107 NM_001042470 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 167.75-14 chr12 17091321 17091520 + 1.25 NA Intergenic MLT2B3|LTR|ERVL 102673 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 154-40 chr2 99069590 99069806 + 1.25 NA intron (NR_146001, intron 13 of 18) intron (NR_146001, intron 13 of 18) 71482 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 290-18 chr8 32927379 32927842 + 1.25 NA Intergenic Intergenic 205775 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 178.5-65 chr6 47959100 47959340 + 1.25 NA intron (NM_207499, intron 2 of 2) L1MEc|LINE|L1 109469 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 356.25-3 chr11 92473740 92474036 + 1.25 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 121792 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 310.5-5 chr20 16947225 16947686 + 1.25 NA Intergenic Intergenic 199102 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 127.5-39 chr14 85567840 85567957 + 1.25 NA intron (NM_001346143, intron 1 of 1) AluSx4|SINE|Alu 34549 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 201.75-37 chr8 8569836 8570047 + 1.25 NA Intergenic MER34|LTR|ERV1 -131996 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 158.5-50 chr19 10455535 10455687 + 1.25 NA intron (NM_001111309, intron 7 of 14) AluSx|SINE|Alu 2679 NM_006202 5141 Hs.89901 NM_006202 ENSG00000065989 PDE4A DPDE2|PDE4|PDE46 phosphodiesterase 4A protein-coding 189.75-3 chr1 173818103 173818293 + 1.25 NA intron (NM_001171182, intron 1 of 4) intron (NM_001171182, intron 1 of 4) 5934 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 151.5-61 chr5 31027008 31027201 + 1.25 NA Intergenic Intergenic -166582 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 124.25-34 chr14 76784254 76784386 + 1.25 NA intron (NR_104183, intron 1 of 2) intron (NR_104183, intron 1 of 2) 2404 NR_104183 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 221.5-11 chr14 62816428 62816641 + 1.25 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 228924 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 167.5-34 chr2 5865079 5865256 + 1.25 NA Intergenic Intergenic -52571 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 150.75-45 chr3 58216090 58216313 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie -5198 NM_001256560 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 173.5-12 chr12 7932471 7932658 + 1.25 NA intron (NM_006931, intron 3 of 9) intron (NM_006931, intron 3 of 9) 3623 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 253-24 chr8 107189808 107190154 + 1.25 NA Intergenic Intergenic 146534 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 167-18 chr17 21150990 21151141 + 1.25 NA intron (NM_015510, intron 1 of 6) L1M4a2|LINE|L1 -15122 NM_001330159 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 156.75-88 chr8 122362542 122362685 + 1.25 NA Intergenic Intergenic 206031 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 168.25-24 chr17 8400667 8400915 + 1.25 NA Intergenic MIR3|SINE|MIR -2964 NM_001146684 643904 Hs.526550 NM_001146684 ENSG00000189051 RNF222 - ring finger protein 222 protein-coding 253-11 chr17 58261229 58261627 + 1.25 NA intron (NR_027647, intron 8 of 11) L1MA1|LINE|L1 19507 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 157-46 chr4 108735006 108735193 + 1.25 NA Intergenic L1MEd|LINE|L1 27954 NM_001331033 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 233-18 chr2 61878736 61879122 + 1.25 NA exon (NM_006430, exon 5 of 14) exon (NM_006430, exon 5 of 14) 9727 NM_006430 10575 Hs.421509 NM_006430 ENSG00000115484 CCT4 CCT-DELTA|Cctd|SRB chaperonin containing TCP1 subunit 4 protein-coding 121.25-4 chr10 74373769 74373933 + 1.25 NA intron (NM_001369124, intron 4 of 9) L1MB8|LINE|L1 155473 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 170.75-24 chr14 68658661 68658813 + 1.25 NA intron (NM_001321818, intron 10 of 10) (ATC)n|Simple_repeat|Simple_repeat -29950 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 119.75-80 chr7 122420365 122420552 + 1.25 NA intron (NM_001009571, intron 16 of 27) intron (NM_001009571, intron 16 of 27) -115708 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 198.25-38 chr5 88516866 88517109 + 1.25 NA Intergenic (TTTATA)n|Simple_repeat|Simple_repeat -77897 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 168-60 chr7 26242583 26242731 + 1.25 NA Intergenic Intergenic 40912 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 210.5-41 chr3 55026961 55027212 + 1.25 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -59984 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 211.75-17 chr17 69133707 69133987 + 1.25 NA exon (NM_080284, exon 6 of 39) exon (NM_080284, exon 6 of 39) 8048 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 202.25-17 chr2 21131262 21131583 + 1.25 NA intron (NM_001306137, intron 2 of 3) Charlie1|DNA|hAT-Charlie 7436 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 181.75-45 chr9 16440971 16441227 + 1.25 NA intron (NM_001317939, intron 4 of 6) AluJo|SINE|Alu -164786 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 184.25-21 chr2 73745274 73745533 + 1.25 NA Intergenic Intergenic -7997 NM_001330389 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 141.75-41 chr2 51079930 51080112 + 1.25 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 47420 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 212.25-16 chr15 76273054 76273384 + 1.25 NA intron (NM_000126, intron 9 of 11) L1M5|LINE|L1 -13067 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 136.5-46 chr17 79033698 79033875 + 1.25 NA promoter-TSS (NM_198593) promoter-TSS (NM_198593) -513 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 226-18 chr20 48482358 48482628 + 1.25 NA Intergenic Intergenic 122582 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 210.25-27 chr20 42319036 42319257 + 1.25 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -366337 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 331-5 chr14 52976330 52976683 + 1.25 NA Intergenic Intergenic -25409 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 178.25-4 chr1 94277193 94277457 + 1.25 NA Intergenic Intergenic -29579 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 264-18 chr22 26858999 26859318 + 1.25 NA Intergenic Intergenic -1053 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 235-2 chr10 45487043 45487321 + 1.25 NA intron (NM_001282866, intron 3 of 7) intron (NM_001282866, intron 3 of 7) -34061 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 190.5-30 chr16 63937305 63937523 + 1.25 NA Intergenic Intergenic 1184649 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 117-72 chr5 123000960 123001159 + 1.25 NA intron (NM_014035, intron 4 of 6) intron (NM_014035, intron 4 of 6) 35666 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 240-6 chr11 114725186 114725554 + 1.25 NA Intergenic MER73|LTR|ERVL 46843 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 255-2 chr1 67048113 67048356 + 1.25 NA intron (NM_015139, intron 6 of 11) intron (NM_015139, intron 6 of 11) 5914 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 114.25-83 chr5 21926500 21926661 + 1.25 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -36733 NM_001364109 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 183.75-51 chr7 64055143 64055488 + 1.25 NA intron (NM_001159522, intron 1 of 3) AluSc5|SINE|Alu 9881 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 161.25-63 chr5 89829244 89829392 + 1.25 NA Intergenic Intergenic 187402 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 147-28 chr15 75309506 75309641 + 1.25 NA Intergenic L1MA9|LINE|L1 -26490 NM_001321844 54939 Hs.351327 NM_017828 ENSG00000140365 COMMD4 - COMM domain containing 4 protein-coding 240.75-10 chr14 66430216 66430518 + 1.25 NA Intergenic Intergenic -56004 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 195.5-35 chr18 64133718 64133919 + 1.25 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) 15208 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 238.5-31 chr5 161486022 161486377 + 1.25 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 61925 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 175.5-74 chr7 81348525 81348958 + 1.25 NA Intergenic Intergenic 213078 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 179.25-4 chr1 201841186 201841451 + 1.25 NA intron (NM_018085, intron 1 of 23) L1MC4a|LINE|L1 -11759 NR_046696 100873949 Hs.604842 NR_046696 ENSG00000231871 IPO9-AS1 - IPO9 antisense RNA 1 ncRNA 218.5-35 chr3 159047100 159047395 + 1.25 NA Intergenic Intergenic -22005 NM_001197114 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 170.75-74 chr8 124128877 124129044 + 1.25 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 42562 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 242-8 chr11 111490737 111491081 + 1.25 NA intron (NM_017589, intron 5 of 5) L1MD1|LINE|L1 -19693 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 257.5-35 chrX 30850954 30851181 + 1.25 NA intron (NM_152787, intron 7 of 10) intron (NM_152787, intron 7 of 10) 16444 NR_145449 727682 NR_145449 TAB3-AS1 CXorf29 TAB3 antisense RNA 1 ncRNA 208.5-65 chr7 8999223 8999603 + 1.25 NA Intergenic Intergenic 565804 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 135.5-97 chr7 26442252 26442476 + 1.25 NA intron (NR_148500, intron 2 of 5) L1MC5a|LINE|L1 -42946 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 197.25-11 chr10 97663499 97663807 + 1.25 NA intron (NM_018425, intron 5 of 8) AluSx1|SINE|Alu 22967 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 301.75-11 chr4 89905767 89906331 + 1.25 NA intron (NM_001371403, intron 2 of 8) intron (NM_001371403, intron 2 of 8) 11195 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 220.5-40 chr6 114815554 114815857 + 1.25 NA Intergenic MSTB|LTR|ERVL-MaLR -752828 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 218.25-10 chr11 103076497 103076833 + 1.25 NA intron (NM_001318740, intron 3 of 6) MIRb|SINE|MIR 15495 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 127.5-57 chr2 40635940 40636068 + 1.25 NA Intergenic Intergenic -123569 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 174-58 chrX 84728842 84729084 + 1.25 NA Intergenic L1PA15-16|LINE|L1 -205188 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 129.25-32 chr16 75707857 75708026 + 1.25 NA Intergenic Intergenic -6480 NM_001351307 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 156.5-69 chr6 141187436 141187689 + 1.25 NA Intergenic L1ME1|LINE|L1 503748 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 156.25-41 chr20 11291052 11291178 + 1.25 NA Intergenic L1MEd|LINE|L1 -17732 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 167.25-80 chr8 30759605 30759781 + 1.25 NA intron (NM_005671, intron 5 of 7) AluY|SINE|Alu 15528 NM_001282189 7993 Hs.153678 NM_005671 ENSG00000104691 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 207.5-62 chr8 140126938 140127148 + 1.25 NA intron (NM_001160372, intron 17 of 22) MIRb|SINE|MIR -26508 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 378.75-3 chr5 156001518 156001961 + 1.25 NA Intergenic Intergenic -325018 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 147.75-72 chr7 4331547 4331741 + 1.25 NA Intergenic Intergenic -196807 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 227.25-41 chr8 130490577 130490981 + 1.25 NA Intergenic MIRb|SINE|MIR -47105 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 199-3 chr1 113122323 113122629 + 1.25 NA intron (NM_014813, intron 17 of 17) intron (NM_014813, intron 17 of 17) 49278 NM_001312686 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 184.25-45 chr6 83830527 83830690 + 1.25 NA Intergenic Intergenic -22658 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 173.5-80 chr5 30474673 30474918 + 1.25 NA Intergenic Intergenic 594235 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 264.5-23 chr5 29670683 29670997 + 1.25 NA Intergenic THE1C|LTR|ERVL-MaLR -209720 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 285.25-17 chr4 15683851 15684242 + 1.25 NA intron (NM_001145191, intron 1 of 1) intron (NM_001145191, intron 1 of 1) 2219 NM_001145191 285550 Hs.399980 NM_001145191 ENSG00000237765 FAM200B C4orf53 family with sequence similarity 200 member B protein-coding 209.5-39 chr5 46086448 46086817 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -390252 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 202-5 chr12 32634933 32635165 + 1.25 NA intron (NM_001370297, intron 13 of 14) intron (NM_001370297, intron 13 of 14) -44151 NM_001278463 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 166.25-54 chr7 134472495 134472711 + 1.25 NA Intergenic L2|LINE|L2 -13364 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 301.75-3 chr10 107197367 107197881 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -32918 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 151.5-88 chr9 12969488 12969685 + 1.25 NA Intergenic Intergenic 3047 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 155.75-36 chr3 86858837 86858975 + 1.25 NA Intergenic L1M1|LINE|L1 132243 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 114.25-112 chr8 140763827 140764035 + 1.25 NA intron (NR_148037, intron 17 of 34) intron (NR_148037, intron 17 of 34) -31278 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 259.75-22 chr8 129032654 129033128 + 1.25 NA Intergenic Intergenic -66890 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 126.75-57 chr3 46758017 46758151 + 1.25 NA Intergenic L1MEi|LINE|L1 -1229 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 195.25-52 chr9 26845746 26845987 + 1.25 NA intron (NM_001167575, intron 5 of 5) L1M6B|LINE|L1 46936 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 246.25-20 chr22 49554367 49554654 + 1.25 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -11044 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 271.25-2 chr11 44195472 44195901 + 1.25 NA intron (NM_207122, intron 8 of 13) intron (NM_207122, intron 8 of 13) 99489 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 257.75-22 chr6 111711617 111711905 + 1.25 NA intron (NM_153047, intron 5 of 13) intron (NM_153047, intron 5 of 13) 47370 NM_153048 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 115.75-57 chr3 1248901 1249066 + 1.25 NA intron (NM_001289080, intron 4 of 22) MER5A1|DNA|hAT-Charlie 155959 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 167-43 chr22 25693518 25693703 + 1.25 NA intron (NM_001362778, intron 11 of 19) intron (NM_001362778, intron 11 of 19) -48578 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 201-2 chr1 213800636 213800803 + 1.25 NA Intergenic Intergenic -124030 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 327-2 chr10 122149115 122149412 + 1.25 NA intron (NM_206862, intron 7 of 22) intron (NM_206862, intron 7 of 22) -14367 NM_001291878 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 223.25-14 chr17 47154951 47155280 + 1.25 NA intron (NM_001353051, intron 5 of 16) intron (NM_001353051, intron 5 of 16) 34180 NM_001353035 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 142.25-51 chr4 115363065 115363201 + 1.25 NA Intergenic Intergenic -249513 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 128.5-46 chr20 4477026 4477219 + 1.25 NA Intergenic Intergenic -209334 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 278.75-7 chr22 33566136 33566427 + 1.25 NA intron (NM_133642, intron 5 of 14) L1ME4a|LINE|L1 -129612 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 153.75-45 chr20 48861352 48861502 + 1.25 NA Intergenic Intergenic -33428 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 127.5-81 chr3 83762282 83762450 + 1.25 NA Intergenic Intergenic 1107209 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 198.75-26 chr22 31607118 31607314 + 1.25 NA intron (NM_001007467, intron 21 of 32) intron (NM_001007467, intron 21 of 32) 14315 NR_106959 102465666 NR_106959 ENSG00000284082 MIR7109 hsa-mir-7109 microRNA 7109 ncRNA 190.5-71 chr7 126024617 126024916 + 1.25 NA Intergenic Intergenic -760475 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 223.75-2 chr1 70179657 70179948 + 1.25 NA intron (NM_017768, intron 5 of 14) intron (NM_017768, intron 5 of 14) 25777 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 217.75-42 chr9 25919785 25920053 + 1.25 NA Intergenic L1M5|LINE|L1 139863 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 215.5-29 chr22 43640025 43640391 + 1.25 NA intron (NM_198856, intron 15 of 29) L1MEf|LINE|L1 123954 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 195-61 chr8 118310298 118310537 + 1.25 NA intron (NM_001101676, intron 4 of 4) LTR67B|LTR|ERVL -198598 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 247.25-4 chr11 40720374 40720725 + 1.25 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -427419 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 186.25-52 chr8 79865759 79866039 + 1.25 NA intron (NR_110954, intron 2 of 5) L2c|LINE|L2 5838 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 236.5-6 chr10 61829508 61829786 + 1.25 NA Intergenic Intergenic -72052 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 429-7 chr3 60272970 60273465 + 1.25 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -192308 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 175.75-16 chr2 14290652 14290817 + 1.25 NA intron (NR_103814, intron 2 of 3) MER33|DNA|hAT-Charlie 110224 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 147.25-51 chr5 15432876 15433003 + 1.25 NA Intergenic L1ME1|LINE|L1 -67241 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 139.25-8 chr10 51646352 51646580 + 1.25 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 53129 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 203.75-22 chr2 65374099 65374282 + 1.25 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -7412 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 247-13 chr18 55814620 55814991 + 1.25 NA Intergenic Intergenic -33080 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 173-14 chr13 42884398 42884697 + 1.25 NA Intergenic Intergenic -11803 NR_126388 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 185.75-4 chr10 32518351 32518553 + 1.25 NA exon (NM_001026383, exon 12 of 18) exon (NM_001026383, exon 12 of 18) 72312 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 305.5-2 chr10 16988828 16989256 + 1.25 NA intron (NM_001081, intron 29 of 66) L2a|LINE|L2 140775 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 179.75 chr1 44527475 44527723 + 1.25 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) -17894 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 179.25-38 chr6 45431902 45432061 + 1.25 NA exon (NM_001024630, exon 4 of 9) exon (NM_001024630, exon 4 of 9) 9706 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 253.25-14 chr19 36136186 36136472 + 1.25 NA Intergenic AluJo|SINE|Alu -3737 NM_001749 826 Hs.515371 NM_001749 ENSG00000126247 CAPNS1 CALPAIN4|CANP|CANPS|CAPN4|CDPS|CSS1 calpain small subunit 1 protein-coding 124.5-19 chr11 84829374 84829566 + 1.25 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 93951 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 218.5-52 chr8 50325820 50326160 + 1.25 NA intron (NR_135797, intron 2 of 20) L1MCa|LINE|L1 161859 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 158-5 chr10 43771822 43772029 + 1.25 NA Intergenic L1MEc|LINE|L1 6900 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 185.25-36 chr3 48777918 48778227 + 1.25 NA intron (NM_001321982, intron 5 of 11) L2b|LINE|L2 -60794 NM_001146178 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 275.75-11 chr18 6810731 6811127 + 1.25 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -23556 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 253.5-47 chrX 51358275 51358577 + 1.25 NA Intergenic LTR24B|LTR|ERV1 25604 NM_001304963 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 335.75-3 chr14 103624692 103625048 + 1.25 NA Intergenic AluSg7|SINE|Alu -4318 NM_001130107 3831 Hs.20107 NM_005552 ENSG00000126214 KLC1 KLC|KNS2|KNS2A kinesin light chain 1 protein-coding 116.75 chr1 107528566 107528687 + 1.25 NA Intergenic Intergenic 159873 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 139.75-50 chr20 45644030 45644157 + 1.25 NA Intergenic L1MA8|LINE|L1 -12809 NM_147198 259240 Hs.249828 NM_147198 ENSG00000180205 WFDC9 WAP9|dJ688G8.2 WAP four-disulfide core domain 9 protein-coding 228-8 chr11 99071909 99072220 + 1.25 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 51115 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 172.5-27 chr2 34286862 34287168 + 1.25 NA intron (NR_126403, intron 5 of 5) intron (NR_126403, intron 5 of 5) 219789 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 174-29 chr2 54112126 54112289 + 1.25 NA intron (NM_001320587, intron 3 of 5) intron (NM_001320587, intron 3 of 5) -3408 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 120.75-47 chr2 49504879 49505007 + 1.25 NA Intergenic Intergenic -350416 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 249.25-23 chr7 87089599 87089897 + 1.25 NA Intergenic Intergenic -30094 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 122.5-43 chr18 54659063 54659199 + 1.25 NA Intergenic Intergenic 67972 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 238.25-24 chr6 27359987 27360360 + 1.25 NA non-coding (NR_002722, exon 4 of 4) non-coding (NR_002722, exon 4 of 4) 11352 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 189.75-39 chr5 31458486 31458776 + 1.25 NA intron (NM_013235, intron 19 of 34) MER3|DNA|hAT-Charlie 73462 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 141.75-59 chr4 78731069 78731199 + 1.25 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat -45216 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 220.25-5 chr10 27057246 27057527 + 1.25 NA intron (NM_014915, intron 15 of 33) intron (NM_014915, intron 15 of 33) 43112 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 126-80 chr7 43569573 43569812 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -13416 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 256.25-19 chr9 71906927 71907181 + 1.25 NA intron (NM_001025780, intron 1 of 3) intron (NM_001025780, intron 1 of 3) 4191 NM_001025780 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 259-31 chr8 126414837 126415205 + 1.25 NA Intergenic Intergenic 89526 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 184.25-51 chr8 23620601 23620922 + 1.25 NA Intergenic Intergenic 62128 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 151.25-9 chr10 108478756 108478966 + 1.25 NA Intergenic Intergenic -409568 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 239.25-30 chr9 84074488 84074720 + 1.25 NA intron (NR_110995, intron 2 of 8) L1MEf|LINE|L1 11161 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 281-12 chr20 52470915 52471355 + 1.25 NA Intergenic Intergenic -149703 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 177.75-68 chr9 120672202 120672372 + 1.25 NA intron (NM_001080497, intron 1 of 5) L1MD|LINE|L1 42183 NM_001080497 1955 Hs.744903 NM_001080497 ENSG00000106780 MEGF9 EGFL5 multiple EGF like domains 9 protein-coding 122.25-101 chr9 90156029 90156163 + 1.25 NA Intergenic (ATGTAT)n|Simple_repeat|Simple_repeat -114597 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 195.25-18 chr16 80736064 80736408 + 1.25 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 68362 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 177.75-60 chr8 89398723 89398925 + 1.25 NA Intergenic Intergenic 358887 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 237-13 chr14 78712643 78712970 + 1.25 NA intron (NR_073547, intron 7 of 20) AluSx1|SINE|Alu 309087 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 296.5 chr1 56122320 56122726 + 1.25 NA Intergenic L1PA13|LINE|L1 177436 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 144.75-58 chr3 129881552 129881761 + 1.25 NA intron (NM_001349271, intron 1 of 4) intron (NM_001349271, intron 1 of 4) 11920 NM_001128224 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 172.5-82 chr7 145308555 145308829 + 1.25 NA Intergenic L1PREC2|LINE|L1 -472639 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 116.25-44 chr19 30110918 30111071 + 1.25 NA Intergenic Intergenic 168755 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 251.5-9 chr16 49396963 49397278 + 1.25 NA intron (NM_144602, intron 4 of 4) intron (NM_144602, intron 4 of 4) 23316 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 191.75-21 chr2 51740052 51740351 + 1.25 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -630447 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 220.75-36 chr8 139647153 139647389 + 1.25 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 55852 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 317.5-2 chr1 100833466 100833932 + 1.25 NA Intergenic Intergenic 61143 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 201.5-59 chr7 94078121 94078299 + 1.25 NA Intergenic Intergenic -73855 NR_133909 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 199.75-37 chr6 53973081 53973319 + 1.25 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) -25690 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 232.5-32 chr4 105188335 105188560 + 1.25 NA intron (NR_126420, intron 2 of 5) L1MB4|LINE|L1 41762 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 126.25-23 chr12 21577085 21577248 + 1.25 NA intron (NM_021957, intron 2 of 15) intron (NM_021957, intron 2 of 15) 27681 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 178.5-26 chr2 20784968 20785282 + 1.25 NA intron (NM_001282722, intron 1 of 4) L1MCa|LINE|L1 37976 NM_001282724 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 114.5-29 chr16 74029276 74029417 + 1.25 NA Intergenic Intergenic 186175 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 213.75-34 chr3 102498522 102498731 + 1.25 NA Intergenic Intergenic 63611 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 343.25-2 chr13 106494081 106494584 + 1.25 NA intron (NM_004093, intron 4 of 4) intron (NM_004093, intron 4 of 4) 40708 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 287.25-11 chr3 14894755 14895249 + 1.25 NA intron (NM_152536, intron 4 of 19) L1MA4|LINE|L1 52503 NR_046253 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 140.25-95 chr9 27815690 27815864 + 1.25 NA Intergenic L1MA4A|LINE|L1 -241911 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 306.25-10 chr3 89252483 89252799 + 1.25 NA intron (NM_182644, intron 3 of 6) AluJo|SINE|Alu 145020 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 165.25-29 chr20 43023619 43023908 + 1.25 NA intron (NM_133170, intron 1 of 31) MamTip3|DNA|hAT-Tip100 55020 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 182.25-22 chr2 100369527 100369682 + 1.25 NA Intergenic Intergenic -46871 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 133.25-75 chr7 41146681 41146805 + 1.25 NA Intergenic L1ME1|LINE|L1 45139 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 128.75-12 chr11 10788742 10788896 + 1.25 NA Intergenic AluJb|SINE|Alu 12789 NR_004403 692223 Hs.723086 NR_004403 ENSG00000238622 SNORD97 U97 small nucleolar RNA, C/D box 97 snoRNA 194.5-26 chr18 7466456 7466764 + 1.25 NA Intergenic Intergenic -5604 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 143.5-71 chr4 40845396 40845557 + 1.25 NA intron (NM_001166051, intron 1 of 6) intron (NM_001166051, intron 1 of 6) 11679 NM_001166052 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 250.75-18 chr5 57070464 57070810 + 1.25 NA Intergenic AluJr|SINE|Alu -103311 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 116.75-29 chr16 53103526 53103744 + 1.25 NA intron (NM_025134, intron 1 of 38) MIRb|SINE|MIR -27377 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 366-13 chr7 39225056 39225479 + 1.25 NA intron (NM_001370959, intron 4 of 9) AluSz6|SINE|Alu 103867 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 251.75-12 chr3 112743798 112744211 + 1.25 NA intron (NR_110017, intron 1 of 4) intron (NR_110017, intron 1 of 4) 5315 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 240.5-21 chr15 68194120 68194562 + 1.25 NA intron (NR_104583, intron 1 of 1) intron (NR_104583, intron 1 of 1) 11769 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 179.75-9 chr11 60367961 60368447 + 1.25 NA Intergenic LTR17|LTR|ERV1 -10281 NM_206938 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 146.25-10 chr10 61244323 61244464 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -208246 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 173.5-51 chr2 198204138 198204499 + 1.25 NA Intergenic Intergenic 170779 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 162-64 chr9 81225310 81225521 + 1.25 NA Intergenic Intergenic 464120 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 237.5-14 chr15 41670155 41670484 + 1.25 NA intron (NM_001164273, intron 2 of 23) L1MA9|LINE|L1 9907 NM_001164273 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MAX dimerization protein MGA protein-coding 134.25-46 chr21 21003143 21003265 + 1.25 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 4795 NM_001352592 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 133.5-31 chr14 85410339 85410660 + 1.25 NA intron (NR_102737, intron 2 of 2) intron (NR_102737, intron 2 of 2) 16584 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 200.75-32 chr5 35783749 35783959 + 1.25 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -73037 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 209.5-44 chr6 72810393 72810646 + 1.25 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 157234 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 198.5-42 chr5 110157794 110158044 + 1.25 NA Intergenic L1ME3C|LINE|L1 274737 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 172.5-31 chr2 80768429 80768601 + 1.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR 455136 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 120-66 chr4 39263222 39263404 + 1.25 NA intron (NM_025132, intron 28 of 36) L2|LINE|L2 80784 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 275.5-17 chr2 96999582 96999946 + 1.25 NA Intergenic AluSp|SINE|Alu -13184 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 185.75-27 chr17 40004815 40005067 + 1.25 NA Intergenic Intergenic -10499 NM_172219 1440 Hs.2233 NM_000759 ENSG00000108342 CSF3 C17orf33|CSF3OS|GCSF colony stimulating factor 3 protein-coding 215.75-25 chr6 141332542 141332795 + 1.25 NA Intergenic Intergenic 648854 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 260.5-33 chr8 134592177 134592541 + 1.25 NA intron (NM_020863, intron 7 of 15) intron (NM_020863, intron 7 of 15) -5712 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 119.5-97 chr5 28727106 28727293 + 1.25 NA Intergenic MLT2A2|LTR|ERVL -199671 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 280-20 chr5 25715119 25715428 + 1.25 NA Intergenic Intergenic 524320 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 122.75-83 chr9 7257746 7257865 + 1.25 NA Intergenic Intergenic 500455 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 118.5-104 chr7 64574385 64574541 + 1.25 NA promoter-TSS (NR_077227) promoter-TSS (NR_077227) -232 NR_077227 100128885 Hs.586332 NR_077227 LOC100128885 - uncharacterized LOC100128885 ncRNA 229.75-8 chr14 45602984 45603293 + 1.25 NA Intergenic Intergenic 112464 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 204-18 chr18 2190527 2190740 + 1.25 NA Intergenic Intergenic 380872 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 204.5-36 chr20 14098536 14098743 + 1.25 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 103123 NM_001351663 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 136.25-69 chr7 10467096 10467277 + 1.25 NA intron (NR_147499, intron 2 of 2) MIRb|SINE|MIR -235490 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 180.5-51 chr20 52506552 52506879 + 1.25 NA Intergenic L1MA3|LINE|L1 -114123 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 223-12 chr12 125961711 125961973 + 1.25 NA non-coding (NR_034132, exon 5 of 6) non-coding (NR_034132, exon 5 of 6) 21532 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 174.25-57 chr8 112590571 112590780 + 1.25 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -52818 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 159.75-39 chr3 150588865 150589047 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14365 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 312.75-9 chr8 109404449 109404820 + 1.25 NA exon (NM_177531, exon 15 of 78) exon (NM_177531, exon 15 of 78) 42173 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 221.5-4 chr1 215806177 215806535 + 1.25 NA intron (NM_206933, intron 49 of 71) intron (NM_206933, intron 49 of 71) 239052 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 179-51 chr5 163726321 163726603 + 1.25 NA Intergenic Intergenic 220843 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 216-2 chr1 117694130 117694433 + 1.25 NA Intergenic Intergenic 88233 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 178.75-41 chr3 143585698 143585862 + 1.25 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 243534 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 140-58 chr6 61826550 61826753 + 1.25 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 252521 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 247.25-19 chr3 50241592 50241853 + 1.25 NA intron (NM_001282618, intron 1 of 7) intron (NM_001282618, intron 1 of 7) -5188 NM_001166425 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 250.75-7 chr15 59377955 59378321 + 1.25 NA Intergenic Intergenic -5267 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 262.25-14 chr2 154778551 154778837 + 1.25 NA intron (NM_002239, intron 2 of 2) (ATTATTT)n|Simple_repeat|Simple_repeat 79999 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 236.5 chr1 27822081 27822427 + 1.25 NA exon (NM_177424, exon 9 of 9) exon (NM_177424, exon 9 of 9) -8528 NM_014110 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 205-17 chr14 57838792 57839065 + 1.25 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 26071 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 183.5-14 chr10 125659907 125660129 + 1.25 NA intron (NM_001128202, intron 3 of 3) MER33|DNA|hAT-Charlie 23145 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 159.75-63 chr8 85945080 85945242 + 1.25 NA Intergenic L1MEd|LINE|L1 -117219 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 186-31 chr20 19342194 19342465 + 1.25 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -57733 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 179.5-32 chr14 51013430 51013676 + 1.25 NA intron (NM_015163, intron 3 of 9) intron (NM_015163, intron 3 of 9) -69070 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 182.5-36 chr21 19980017 19980270 + 1.25 NA Intergenic Intergenic -80388 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 191-18 chr17 66690464 66690644 + 1.25 NA intron (NM_002737, intron 8 of 16) AluSz6|SINE|Alu -96518 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 194.25-38 chr3 178111011 178111330 + 1.25 NA Intergenic L1MEf|LINE|L1 294305 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 232.5-16 chr14 79036928 79037315 + 1.25 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -162861 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 297.25 chr1 41694534 41695017 + 1.25 NA intron (NM_001127714, intron 1 of 7) MIRb|SINE|MIR -210092 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 114.75-22 chr12 49364068 49364231 + 1.25 NA Intergenic MamTip3|DNA|hAT-Tip100 -2756 NR_120663 65244 Hs.654826 NM_023071 ENSG00000123352 SPATS2 Nbla00526|P59SCR|SCR59|SPATA10 spermatogenesis associated serine rich 2 protein-coding 181.5-75 chr8 103925464 103925721 + 1.25 NA intron (NR_145711, intron 8 of 21) intron (NR_145711, intron 8 of 21) 106372 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 156.5-88 chr8 121699001 121699301 + 1.25 NA Intergenic MER57C1|LTR|ERV1 -57711 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 335.25-3 chr11 79441579 79442093 + 1.25 NA promoter-TSS (NM_001098816) promoter-TSS (NM_001098816) -806 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 138.25-56 chr22 29800362 29800511 + 1.25 NA intron (NM_001369943, intron 13 of 17) L2b|LINE|L2 33067 NM_013387 29796 Hs.284292 NM_013387 ENSG00000184076 UQCR10 HSPC051|HSPC119|HSPC151|QCR9|UCCR7.2|UCRC ubiquinol-cytochrome c reductase, complex III subunit X protein-coding 165.5-67 chr4 84441774 84442017 + 1.25 NA Intergenic Intergenic 56339 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 167.25-13 chr10 33682231 33682520 + 1.25 NA Intergenic AluSg|SINE|Alu 90305 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 182-29 chr20 55618974 55619219 + 1.25 NA Intergenic L1PB1|LINE|L1 -191899 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 206.25-28 chr5 29615157 29615369 + 1.25 NA Intergenic L1M3|LINE|L1 -219287 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 229-34 chr7 141997001 141997268 + 1.25 NA intron (NM_004668, intron 1 of 47) intron (NM_004668, intron 1 of 47) 1255 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 120-63 chr3 114391080 114391227 + 1.25 NA intron (NM_001348805, intron 7 of 10) L2c|LINE|L2 -7511 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 115.25-91 chr8 57501786 57501936 + 1.25 NA Intergenic Intergenic 158074 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 218.75-22 chr3 23082912 23083333 + 1.25 NA Intergenic AluJr|SINE|Alu 119456 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 179.5-93 chr8 110588868 110589100 + 1.25 NA Intergenic Intergenic 438449 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 143.5-90 chr6 136981083 136981358 + 1.25 NA TTS (NR_027994) TTS (NR_027994) 12011 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 117-32 chr19 43696596 43696733 + 1.25 NA Intergenic Intergenic -19412 NM_019612 56269 Hs.515444 NM_019612 ENSG00000124449 IRGC CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 immunity related GTPase cinema protein-coding 329-5 chr2 177287784 177288202 + 1.25 NA intron (NR_026966, intron 8 of 8) intron (NR_026966, intron 8 of 8) -22862 NM_001313903 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|IMDDHH|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 180.75-62 chr9 70341379 70341605 + 1.25 NA intron (NM_015110, intron 17 of 24) intron (NM_015110, intron 17 of 24) 73165 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 201.75-16 chr18 68685757 68685964 + 1.25 NA intron (NM_019022, intron 10 of 15) L2b|LINE|L2 29248 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 199-38 chr6 54091050 54091300 + 1.25 NA intron (NM_001281746, intron 1 of 11) MER20|DNA|hAT-Charlie -20268 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 156-45 chr3 71326892 71327105 + 1.25 NA intron (NM_001349340, intron 3 of 19) MIR|SINE|MIR -22227 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 165.5-8 chr10 93006565 93006781 + 1.25 NA intron (NM_001319195, intron 19 of 21) intron (NM_001319195, intron 19 of 21) -54125 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 202.75-17 chr3 188513459 188513783 + 1.25 NA intron (NM_001167672, intron 3 of 9) intron (NM_001167672, intron 3 of 9) 55045 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 150.25-2 chr1 84254346 84254533 + 1.25 NA Intergenic Intergenic -44099 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 266.5-15 chr2 162432562 162432887 + 1.25 NA intron (NM_033272, intron 8 of 15) L1PA16|LINE|L1 88356 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 196.5-15 chr10 54563051 54563215 + 1.25 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 44824 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 144-72 chr8 60589023 60589194 + 1.25 NA intron (NM_002865, intron 5 of 7) intron (NM_002865, intron 5 of 7) 72121 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 128-11 chr13 73081025 73081152 + 1.25 NA Intergenic Intergenic 22083 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 130.75-74 chr8 126795948 126796120 + 1.25 NA Intergenic Intergenic -217120 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 178-32 chr3 33124403 33124702 + 1.25 NA exon (NM_006371, exon 3 of 7) exon (NM_006371, exon 3 of 7) 10594 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 374.5-3 chr20 52801699 52802156 + 1.25 NA Intergenic Intergenic -170431 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 264.25-11 chr5 11489547 11489877 + 1.25 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 99205 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 230.75-7 chr12 132484534 132484822 + 1.25 NA Intergenic Intergenic -5473 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 138.5-59 chr2 119386586 119386842 + 1.25 NA Intergenic L1ME4a|LINE|L1 19039 NM_001079863 1622 Hs.78888 NM_020548 ENSG00000155368 DBI ACBD1|ACBP|CCK-RP|EP diazepam binding inhibitor, acyl-CoA binding protein protein-coding 237.5-9 chr12 121378999 121379260 + 1.25 NA Intergenic L1MB5|LINE|L1 -20954 NM_001256858 80196 Hs.292804 NM_025126 ENSG00000170633 RNF34 CARP-1|CARP1|RFI|RIF|RIFF|hRFI ring finger protein 34 protein-coding 162-13 chr16 64167438 64167649 + 1.25 NA Intergenic Intergenic 954520 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 201.5-61 chr8 73610787 73610992 + 1.25 NA intron (NM_001164384, intron 7 of 10) MIRb|SINE|MIR 135951 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 159.25-54 chr4 113895963 113896151 + 1.25 NA Intergenic Intergenic 83590 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 160.75-18 chr13 42278253 42278398 + 1.25 NA intron (NM_016248, intron 1 of 12) intron (NM_016248, intron 1 of 12) 6173 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 289.75-12 chr2 65772812 65773081 + 1.25 NA Intergenic Intergenic -340347 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 178.5-90 chr8 132222226 132222391 + 1.25 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -117043 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 191.5-6 chr1 117812534 117812807 + 1.25 NA Intergenic Intergenic 116951 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 160.75-5 chr1 189992766 189992975 + 1.25 NA Intergenic Intergenic 483140 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 142.25-45 chr3 85328082 85328366 + 1.25 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -57486 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 189.5-26 chr2 66976011 66976272 + 1.25 NA Intergenic L1MC3|LINE|L1 -53651 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 155.75-28 chr20 12798193 12798438 + 1.25 NA Intergenic Intergenic 138648 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 154-6 chr10 95983246 95983444 + 1.25 NA intron (NM_001349008, intron 18 of 34) Charlie17a|DNA|hAT-Charlie -16746 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 137.25-51 chr3 9332757 9333089 + 1.25 NA Intergenic Intergenic -30131 NM_001114092 25917 Hs.443081 NM_015453 ENSG00000134077 THUMPD3 - THUMP domain containing 3 protein-coding 174-10 chr12 69710399 69710599 + 1.25 NA Intergenic L1MC4a|LINE|L1 -11083 NM_001282613 144453 Hs.280782 NM_032735 ENSG00000127325 BEST3 VMD2L3 bestrophin 3 protein-coding 159.25-47 chr3 32599936 32600196 + 1.25 NA Intergenic MLT1G1|LTR|ERVL-MaLR -29142 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 121.5-77 chr21 25588711 25588875 + 1.25 NA intron (NM_080794, intron 9 of 10) intron (NM_080794, intron 9 of 10) -5569 NR_024092 282566 Hs.384586 NR_024092 ENSG00000260583 LINC00515 C21orf71|PRED21 long intergenic non-protein coding RNA 515 ncRNA 159-29 chr18 7104242 7104439 + 1.25 NA intron (NM_005559, intron 1 of 62) L2a|LINE|L2 13457 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 127-22 chr12 28374950 28375103 + 1.25 NA intron (NM_001330367, intron 7 of 11) intron (NM_001330367, intron 7 of 11) -184288 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 230.25-27 chr6 64538294 64538534 + 1.25 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 731578 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 217-9 chr15 49497858 49498107 + 1.25 NA intron (NM_001330293, intron 10 of 10) intron (NM_001330293, intron 10 of 10) 74740 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 168.5-16 chr12 100617512 100617697 + 1.25 NA intron (NM_001303130, intron 5 of 8) intron (NM_001303130, intron 5 of 8) 23986 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 145.75-67 chr7 82552219 82552391 + 1.25 NA Intergenic L1PA16|LINE|L1 -108349 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 193.25-9 chr12 55437137 55437410 + 1.25 NA Intergenic L1ME1|LINE|L1 11019 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 136.75-72 chr4 25373465 25373722 + 1.25 NA Intergenic Intergenic -3670 NM_013367 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 122.75-43 chr2 49409244 49409353 + 1.25 NA Intergenic MER65A|LTR|ERV1 -254771 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 190.5-16 chr11 25840221 25840473 + 1.25 NA Intergenic Intergenic -348776 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 210.5-28 chr19 31234642 31234832 + 1.25 NA intron (NR_138036, intron 1 of 4) L1ME2|LINE|L1 67227 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 185.75-56 chr7 124469716 124469998 + 1.25 NA Intergenic LTR8A|LTR|ERV1 -117761 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 156.75-80 chr5 142732801 142732988 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12706 NR_110558 101926975 Hs.638583 NR_110558 ENSG00000236714 LINC01844 - long intergenic non-protein coding RNA 1844 ncRNA 224.5-27 chr3 37677344 37677573 + 1.25 NA intron (NM_002207, intron 17 of 27) intron (NM_002207, intron 17 of 27) 184322 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 155.25-75 chr9 104958453 104958595 + 1.25 NA Intergenic Intergenic -30369 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 163.5-80 chr6 98465466 98465699 + 1.25 NA Intergenic Intergenic 366118 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 281.75-5 chr15 92553674 92554041 + 1.25 NA Intergenic L1MB5|LINE|L1 18406 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 276.5 chr1 93141482 93142031 + 1.25 NA Intergenic AluJr|SINE|Alu 38657 NM_001167830 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 213.5 chr1 33630600 33630874 + 1.25 NA intron (NM_052896, intron 32 of 69) L1MD|LINE|L1 158092 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 202-13 chr20 52100174 52100575 + 1.25 NA intron (NM_199427, intron 5 of 8) AluSz|SINE|Alu 5110 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 192.25-39 chr8 122133867 122134137 + 1.25 NA Intergenic Intergenic 434642 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 114.5-73 chr4 14873691 14873796 + 1.25 NA intron (NR_126435, intron 1 of 6) intron (NR_126435, intron 1 of 6) 14426 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 169.75-38 chr2 237536409 237536665 + 1.25 NA intron (NM_024101, intron 9 of 15) intron (NM_024101, intron 9 of 15) 25606 NR_106869 102465486 NR_106869 ENSG00000277842 MIR6811 hsa-mir-6811 microRNA 6811 ncRNA 173.5-45 chr2 98890874 98891045 + 1.25 NA intron (NM_207362, intron 1 of 9) AluSq2|SINE|Alu 45266 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 232.5-47 chr7 70879720 70879929 + 1.25 NA Intergenic MER41B|LTR|ERV1 -252320 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 126.75-90 chr7 83185595 83185723 + 1.25 NA Intergenic L1MC3|LINE|L1 -22775 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 128.5-58 chr3 56646971 56647073 + 1.25 NA exon (NM_015224, exon 7 of 17) exon (NM_015224, exon 7 of 17) 17024 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 175-23 chr2 101641961 101642376 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -55535 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 204.5-39 chr20 56183274 56183531 + 1.25 NA Intergenic Charlie18a|DNA|hAT-Charlie -65330 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 301.25-3 chr2 220022822 220023149 + 1.25 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -116420 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 134.75-5 chr1 161986889 161987115 + 1.25 NA intron (NM_001347700, intron 6 of 7) intron (NM_001347700, intron 6 of 7) 37463 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 293.5-15 chr22 26133997 26134265 + 1.25 NA Intergenic Intergenic -35331 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 236.75-19 chr6 100262922 100263224 + 1.25 NA Intergenic Intergenic 200602 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 195-62 chr8 118630977 118631228 + 1.25 NA intron (NR_038210, intron 2 of 4) MLT2B5|LTR|ERVL -9139 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 232.5-33 chr4 113422987 113423302 + 1.25 NA Intergenic Intergenic 130305 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 322.25-17 chr9 7682474 7682793 + 1.25 NA Intergenic Intergenic 117145 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 173.5-75 chr4 56576954 56577146 + 1.25 NA intron (NM_001256475, intron 5 of 8) Tigger15a|DNA|TcMar-Tigger 46444 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 119-54 chr4 36143125 36143260 + 1.25 NA intron (NR_146894, intron 19 of 32) intron (NR_146894, intron 19 of 32) 100747 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 200.5-4 chr1 186157003 186157189 + 1.25 NA intron (NM_031935, intron 97 of 106) MER5B|DNA|hAT-Charlie -139177 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 144.5-20 chr11 46882982 46883117 + 1.25 NA intron (NM_002334, intron 19 of 37) L1ME4a|LINE|L1 35501 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 182.5-17 chr13 56538637 56538808 + 1.25 NA Intergenic L1MA8|LINE|L1 -602196 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 113.75-19 chr10 68430344 68430501 + 1.25 NA intron (NM_001080449, intron 14 of 20) intron (NM_001080449, intron 14 of 20) -23128 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 310-7 chr12 98940241 98940695 + 1.25 NA intron (NM_152788, intron 17 of 25) L2c|LINE|L2 -45177 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 383.75-3 chr8 117540108 117540571 + 1.25 NA TTS (NM_080651) TTS (NM_080651) 19626 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 229-2 chr1 90985035 90985275 + 1.25 NA intron (NM_201269, intron 1 of 5) intron (NM_201269, intron 1 of 5) 36353 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 163.25-73 chr8 131715510 131715845 + 1.25 NA Intergenic Intergenic -188416 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 137.5-118 chr8 110988809 110988984 + 1.25 NA intron (NR_125416, intron 4 of 4) intron (NR_125416, intron 4 of 4) 38537 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 203-39 chr8 65836068 65836401 + 1.25 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) 5830 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 157-44 chr4 52739255 52739537 + 1.25 NA Intergenic Intergenic 12029 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 273-5 chr11 59335295 59335698 + 1.25 NA Intergenic L1M2|LINE|L1 -28963 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 297.25-18 chr8 143415169 143415742 + 1.25 NA Intergenic HAL1|LINE|L1 -2224 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 138.5-13 chr10 18467608 18467759 + 1.25 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 67108 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 155.5-81 chr5 102653243 102653404 + 1.25 NA intron (NR_103753, intron 1 of 2) MER5C|DNA|hAT-Charlie 18141 NR_103756 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 120.25-43 chr22 25217065 25217217 + 1.25 NA Intergenic L1MB3|LINE|L1 -2498 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 114-94 chr9 75107533 75107696 + 1.25 NA intron (NM_012383, intron 1 of 9) intron (NM_012383, intron 1 of 9) 19100 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 175-6 chr10 105715121 105715398 + 1.25 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 105074 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 121-61 chr6 36463126 36463280 + 1.25 NA intron (NR_104481, intron 1 of 3) intron (NR_104481, intron 1 of 3) 20203 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 177.75-39 chr4 69613809 69614037 + 1.25 NA intron (NM_001301239, intron 1 of 4) L1MA3|LINE|L1 25719 NM_001301233 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 175.25-17 chr12 59772917 59773095 + 1.25 NA intron (NR_073055, intron 5 of 6) intron (NR_073055, intron 5 of 6) 83636 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 334.25-9 chr5 94637575 94637980 + 1.25 NA intron (NM_032290, intron 4 of 20) intron (NM_032290, intron 4 of 20) 19108 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 208.5-17 chr13 32016523 32016738 + 1.25 NA Intergenic L2b|LINE|L2 15009 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 326.5-10 chr22 48603549 48603929 + 1.25 NA intron (NM_015381, intron 1 of 3) intron (NM_015381, intron 1 of 3) 27399 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 114.25-18 chr11 58199288 58199466 + 1.25 NA Intergenic L2a|LINE|L2 4804 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 142.5-27 chr14 71818963 71819096 + 1.25 NA Intergenic L1M7|LINE|L1 -113142 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 255.25-14 chr20 45385575 45385996 + 1.25 NA intron (NR_003189, intron 3 of 5) L1MD1|LINE|L1 -7460 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 343.25 chr12 78315683 78316104 + 1.25 NA Intergenic Intergenic 43853 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 151.75-77 chr8 99117810 99117946 + 1.25 NA intron (NR_047582, intron 8 of 8) L1MB7|LINE|L1 104612 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 196.75-11 chr15 22856993 22857242 + 1.25 NA intron (NM_030922, intron 5 of 7) L2a|LINE|L2 18476 NM_001008860 81614 Hs.591003 NM_030922 ENSG00000140157 NIPA2 SLC57A2 NIPA magnesium transporter 2 protein-coding 147.25-9 chr12 4793892 4794037 + 1.25 NA Intergenic Intergenic -15212 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 200-34 chr4 128162447 128162685 + 1.25 NA intron (NM_001350531, intron 10 of 16) MamTip2|DNA|hAT-Tip100 101254 NM_018078 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 174.75-51 chr7 50993198 50993370 + 1.25 NA Intergenic L1ME1|LINE|L1 -199831 NM_001371008 177.5-62 chr7 41159785 41159947 + 1.25 NA Intergenic L1M4|LINE|L1 58262 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 142.75-61 chr4 68597562 68597761 + 1.25 NA Intergenic THE1B-int|LTR|ERVL-MaLR -29134 NM_001077 7367 Hs.575083 NM_001077 ENSG00000197888 UGT2B17 BMND12|UDPGT2B17 UDP glucuronosyltransferase family 2 member B17 protein-coding 152-73 chr9 98649168 98649408 + 1.25 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 59647 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 194-32 chr5 175077347 175077534 + 1.25 NA Intergenic MER101-int|LTR|ERV1 -81709 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 191-20 chr2 55861056 55861355 + 1.25 NA Intergenic Intergenic 62577 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 225.5-29 chr22 29985711 29986027 + 1.25 NA intron (NM_153051, intron 5 of 18) intron (NM_153051, intron 5 of 18) -21180 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 161.75-59 chr8 63603788 63603984 + 1.25 NA Intergenic Intergenic 138037 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 227.75-26 chr8 119712756 119713092 + 1.25 NA Intergenic L1MB8|LINE|L1 -39534 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 241.5-7 chr12 2742810 2743112 + 1.25 NA intron (NR_146317, intron 3 of 3) intron (NR_146317, intron 3 of 3) -51804 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 171.25-4 chr1 204208860 204209017 + 1.25 NA intron (NM_198447, intron 1 of 4) L1MC4|LINE|L1 5050 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 149.75-46 chr4 80703477 80703673 + 1.25 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -327133 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 123.25-14 chr10 128646023 128646212 + 1.25 NA Intergenic Intergenic -266716 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 248-20 chr6 74267329 74267698 + 1.25 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 198062 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 151.5-9 chr10 7511349 7511549 + 1.25 NA Intergenic L1MC1|LINE|L1 -99963 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 189-26 chr2 7988085 7988323 + 1.25 NA Intergenic Intergenic -11390 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 252.5-12 chr16 72224040 72224557 + 1.25 NA Intergenic Intergenic -51848 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 196.5-50 chr3 27185918 27186225 + 1.25 NA intron (NM_001304384, intron 5 of 16) L2|LINE|L2 30452 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 146-22 chr18 63095278 63095479 + 1.25 NA Intergenic Intergenic 224002 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 308.75-2 chr11 21354677 21355107 + 1.25 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 685306 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 151.75-3 chr1 51570337 51570482 + 1.25 NA intron (NR_161259, intron 3 of 8) intron (NR_161259, intron 3 of 8) 13322 NR_161259 441884 NR_161259 CALR4P - calreticulin 4, pseudogene pseudo 140.5-13 chr12 11867251 11867402 + 1.25 NA intron (NM_001987, intron 4 of 7) L1MC5|LINE|L1 -182535 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 230-28 chr7 90177225 90177458 + 1.25 NA intron (NR_110029, intron 2 of 2) L1P4|LINE|L1 22872 NM_012449 26872 Hs.61635 NM_012449 ENSG00000164647 STEAP1 PRSS24|STEAP STEAP family member 1 protein-coding 150-25 chr16 27809021 27809144 + 1.25 NA intron (NM_001109763, intron 5 of 6) intron (NM_001109763, intron 5 of 6) 79075 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 128-67 chr9 69946423 69946599 + 1.25 NA Intergenic Intergenic -97070 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 129.25-73 chr8 84117310 84117502 + 1.25 NA Intergenic L2|LINE|L2 -65381 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 131-34 chr20 55378117 55378221 + 1.25 NA Intergenic Intergenic -44874 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 180.75-19 chr12 50572061 50572361 + 1.25 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 67226 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 251.5-8 chr16 35779017 35779440 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 32676 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 122.5-54 chr20 49324637 49324859 + 1.25 NA Intergenic L2a|LINE|L2 44065 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 152.5-49 chr18 56786579 56786769 + 1.25 NA intron (NM_015285, intron 19 of 27) intron (NM_015285, intron 19 of 27) 135289 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 190.25-10 chr10 83858062 83858214 + 1.25 NA Intergenic MLT2D|LTR|ERVL -181049 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 354.25-4 chr10 95943787 95944286 + 1.25 NA intron (NM_001349008, intron 9 of 34) intron (NM_001349008, intron 9 of 34) 36071 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 119-10 chr11 19816510 19816645 + 1.25 NA intron (NM_182964, intron 1 of 37) MIR|SINE|MIR -56494 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 292.25-2 chr10 57902045 57902477 + 1.25 NA Intergenic L1MD2|LINE|L1 365633 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 190.5-64 chr6 45875735 45875946 + 1.25 NA Intergenic Intergenic 61757 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 116.75-12 chr11 40577172 40577294 + 1.25 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -284103 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 163.25 chr1 62885087 62885377 + 1.25 NA Intergenic Intergenic 101100 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 163.5-34 chr17 35409608 35409867 + 1.25 NA Intergenic Intergenic 22763 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 237.25-8 chr12 14683869 14684307 + 1.25 NA intron (NM_004963, intron 3 of 26) intron (NM_004963, intron 3 of 26) 12511 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 120.25-64 chr6 165934593 165934694 + 1.25 NA intron (NR_026861, intron 1 of 1) intron (NR_026861, intron 1 of 1) -52908 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 193-37 chr3 26654231 26654422 + 1.25 NA intron (NM_001317810, intron 2 of 2) MER5B|DNA|hAT-Charlie 29659 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 209.25-7 chr12 90732919 90733211 + 1.25 NA Intergenic (T)n|Simple_repeat|Simple_repeat -184958 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 263.75-13 chr5 54563360 54563642 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger 45742 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 166.5-6 chr1 60721298 60721525 + 1.25 NA intron (NR_110628, intron 4 of 5) MSTA-int|LTR|ERVL-MaLR -98726 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 206.75 chr1 157546058 157546330 + 1.25 NA intron (NM_001195388, intron 3 of 16) AluSx1|SINE|Alu 6321 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 247.5-50 chr9 28533511 28533761 + 1.25 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 185669 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165-22 chr15 72310070 72310327 + 1.25 NA intron (NM_052840, intron 2 of 12) intron (NM_052840, intron 2 of 12) -3883 NM_001172685 60677 Hs.348342 NM_052840 ENSG00000140488 CELF6 BRUNOL6 CUGBP Elav-like family member 6 protein-coding 151.25-6 chr10 59379508 59379671 + 1.25 NA Intergenic Intergenic -16408 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 201.5-51 chr6 76469056 76469301 + 1.25 NA Intergenic Intergenic 124445 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 219.75-35 chr6 37985935 37986144 + 1.25 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 166312 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 190.25-24 chr2 175949708 175949921 + 1.25 NA intron (NR_130941, intron 9 of 14) intron (NR_130941, intron 9 of 14) 52453 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 152.25-48 chr5 10434790 10435020 + 1.25 NA 3' UTR (NM_001270661, exon 23 of 23) 3' UTR (NM_001270661, exon 23 of 23) 6946 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 125-97 chr9 96569071 96569198 + 1.25 NA intron (NR_147239, intron 1 of 14) L1ME4b|LINE|L1 -2158 NM_001351570 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 255.75-16 chr20 18107984 18108338 + 1.25 NA Intergenic L1MC1|LINE|L1 -29702 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 138-46 chr20 55427665 55427796 + 1.25 NA promoter-TSS (NR_110064) promoter-TSS (NR_110064) -533 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 253.25-29 chr7 11713191 11713682 + 1.25 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 118762 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 218.75-7 chr11 34703699 34703984 + 1.25 NA Intergenic L1MA2|LINE|L1 71275 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 137.75-31 chr16 31664725 31664868 + 1.25 NA Intergenic HERVK14-int|LTR|ERVK -35817 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 116-23 chr15 70333326 70333488 + 1.25 NA Intergenic L1ME2|LINE|L1 172521 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 206.25-30 chr5 99884143 99884428 + 1.25 NA Intergenic Intergenic 350295 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 187-55 chr6 137271356 137271605 + 1.25 NA Intergenic Intergenic -52050 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 209-2 chr1 232477993 232478316 + 1.25 NA intron (NM_020808, intron 5 of 20) intron (NM_020808, intron 5 of 20) 37454 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 179.75-51 chr7 1896927 1897133 + 1.25 NA intron (NM_001013837, intron 18 of 18) Helitron1Na_Mam|RC|Helitron 43541 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 164.25-3 chr1 85139038 85139219 + 1.25 NA Intergenic Intergenic 5334 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 264-24 chr5 125938866 125939334 + 1.25 NA Intergenic Intergenic -240477 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 138.75-34 chr19 36833892 36834062 + 1.25 NA intron (NM_001242800, intron 1 of 4) AluSp|SINE|Alu 4050 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 154-60 chr6 74729206 74729405 + 1.25 NA Intergenic L1MC5a|LINE|L1 399477 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 337.75-6 chr20 15202951 15203428 + 1.25 NA intron (NM_001033087, intron 1 of 13) intron (NM_001033087, intron 1 of 13) 6349 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 210.75-27 chr4 90550910 90551194 + 1.25 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 316021 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 151-57 chr5 110159646 110159819 + 1.25 NA Intergenic MER58C|DNA|hAT-Charlie 276550 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 194-36 chr7 15981284 15981587 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL -229051 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 146.75-17 chr14 68640147 68640277 + 1.25 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -11425 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 163.75-16 chr12 2558110 2558321 + 1.25 NA intron (NM_199460, intron 11 of 49).2 LTR81B|LTR|Gypsy 114005 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 138.5-5 chr1 108793808 108793982 + 1.25 NA intron (NM_007269, intron 12 of 18) intron (NM_007269, intron 12 of 18) 47221 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 204.5-19 chr14 96222371 96222727 + 1.25 NA intron (NM_000623, intron 1 of 2) MER21C|LTR|ERVL 17751 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 214.75-6 chr12 2425176 2425368 + 1.25 NA intron (NM_199460, intron 3 of 49).2 L1ME4a|LINE|L1 155496 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 214.75-17 chr2 112128222 112128576 + 1.25 NA Intergenic L1MB7|LINE|L1 -9986 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 130.75-8 chr1 201562655 201562789 + 1.25 NA Intergenic Intergenic 42818 NR_026667 376693 Hs.605989 NR_026667 RPS10P7 RPS10_2_147 ribosomal protein S10 pseudogene 7 pseudo 202.5-56 chr8 71930523 71930743 + 1.25 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -86137 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 259-15 chr2 107418525 107418858 + 1.25 NA Intergenic Intergenic -69166 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 134.5-33 chr17_KI270729v1_random 10479 10611 + 1.25 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 220-32 chr7 107300358 107300601 + 1.25 NA intron (NM_181733, intron 11 of 20) L1ME1|LINE|L1 131476 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 270.5-13 chr19 11796215 11796454 + 1.25 NA Intergenic L1M2|LINE|L1 -2189 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 245.25-25 chr7 52443230 52443615 + 1.25 NA Intergenic L1MC2|LINE|L1 -592211 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 309.75-8 chr19 24379868 24380354 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -216664 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 191.5-30 chr18 21326268 21326548 + 1.25 NA intron (NM_001142966, intron 1 of 32) MLT1J|LTR|ERVL-MaLR 84166 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 369.75-7 chr2 134251661 134252115 + 1.25 NA intron (NM_001371457, intron 1 of 16) L1MA6|LINE|L1 -2184 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 173.75-48 chr7 99910386 99910640 + 1.25 NA intron (NM_033091, intron 1 of 5) L1ME3G|LINE|L1 9017 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 189-16 chr13 51361155 51361360 + 1.25 NA TTS (NM_001039937) TTS (NM_001039937) -12618 NR_049878 100847003 NR_049878 ENSG00000266072 MIR5693 - microRNA 5693 ncRNA 205.5-4 chr10 63286790 63286974 + 1.25 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) -17639 NM_001322254 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 225.75-13 chr2 114298130 114298399 + 1.25 NA Intergenic Intergenic -144377 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 147.25-66 chr7 143941386 143941609 + 1.25 NA Intergenic L1MA7|LINE|L1 6264 NM_001004685 135948 Hs.553596 NM_001004685 ENSG00000221910 OR2F2 OR7-1 olfactory receptor family 2 subfamily F member 2 protein-coding 149.25-72 chr9 105593585 105593789 + 1.25 NA intron (NM_001351502, intron 5 of 13) L2a|LINE|L2 35556 NR_147214 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 155.75-67 chr8 78468520 78468730 + 1.25 NA Intergenic L1PA14|LINE|L1 -47715 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 253.75-9 chr15 66862347 66862741 + 1.25 NA Intergenic Intergenic 93971 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 256.5-7 chr12 14034540 14034814 + 1.25 NA Intergenic L1MB2|LINE|L1 -54321 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 155-37 chr3 161507393 161507549 + 1.25 NA Intergenic Zaphod|DNA|hAT-Tip100 10663 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 266.5-14 chr2 156219452 156219863 + 1.25 NA intron (NR_110250, intron 1 of 3) L1M1|LINE|L1 35274 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 220.5-20 chr18 7965531 7965899 + 1.25 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 398399 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 181.25-27 chr2 42630973 42631123 + 1.25 NA intron (NM_001330443, intron 4 of 16) intron (NM_001330443, intron 4 of 16) 62416 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 125.5-37 chr13 98696875 98697100 + 1.25 NA intron (NM_005073, intron 18 of 22) MLT1B|LTR|ERVL-MaLR 55685 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 237.25-24 chr5 81869028 81869224 + 1.25 NA Intergenic Intergenic -102897 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 269.5-21 chr5 4881361 4881606 + 1.25 NA Intergenic MIRb|SINE|MIR 108002 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 132.75-2 chr1 56252651 56252861 + 1.25 NA Intergenic L2a|LINE|L2 -162207 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 119-59 chr5 74027111 74027239 + 1.25 NA Intergenic MIR|SINE|MIR 213629 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 132.75-81 chr5 173892480 173892620 + 1.25 NA promoter-TSS (NM_001308193) promoter-TSS (NM_001308193) -501 NM_001308193 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 173.75-52 chr8 65055362 65055630 + 1.25 NA Intergenic Intergenic 124844 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 166.75-45 chr4 47884219 47884541 + 1.25 NA exon (NM_001278624, exon 15 of 23) exon (NM_001278624, exon 15 of 23) -29847 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 445.25-3 chr4 30658479 30659186 + 1.25 NA Intergenic Intergenic -61537 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 168.75-25 chr2 85931577 85931828 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger 42422 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 187.75-6 chr12 23886557 23886839 + 1.25 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 62972 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 142.25-42 chr3 28562461 28562655 + 1.25 NA Intergenic Intergenic -12720 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 229.5-9 chr10 68467938 68468161 + 1.25 NA intron (NM_001080449, intron 3 of 20) MIRc|SINE|MIR 3924 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 224.25-21 chr2 167796371 167796649 + 1.25 NA Intergenic AluSz6|SINE|Alu -22162 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 155.25-29 chr18 59388225 59388363 + 1.25 NA Intergenic MIRc|SINE|MIR -29029 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 150.75-37 chr2 159135243 159135415 + 1.25 NA intron (NM_001350063, intron 4 of 24) L1MB8|LINE|L1 -51506 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 128.75-77 chr6 15999486 15999641 + 1.25 NA Intergenic Intergenic -129523 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 155.25-28 chr18 12923705 12923877 + 1.25 NA Intergenic Intergenic -24193 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 152.5-57 chr2 239351793 239351930 + 1.25 NA promoter-TSS (NR_039948) promoter-TSS (NR_039948) -57 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 140.25-80 chr6 132226847 132227018 + 1.25 NA Intergenic L1M7|LINE|L1 92954 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 126.75-62 chr3 165082897 165083057 + 1.25 NA Intergenic MER90|LTR|ERV1 -4481 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 181.75-26 chr3 178565067 178565229 + 1.25 NA intron (NM_001278911, intron 1 of 4) L1ME4b|LINE|L1 6298 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 268-21 chr4 81745558 81746034 + 1.25 NA Intergenic CR1_Mam|LINE|CR1 -273889 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 223.25-11 chr14 65006291 65006580 + 1.25 NA intron (NM_197957, intron 3 of 3) intron (NM_197957, intron 3 of 3) 19540 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 126-82 chr7 83375877 83375980 + 1.25 NA intron (NM_001178129, intron 16 of 16) intron (NM_001178129, intron 16 of 16) -213044 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 189.25-28 chr3 36425037 36425297 + 1.25 NA intron (NM_001292049, intron 1 of 8) L1MC4a|LINE|L1 44680 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 318.25-7 chr8 119195698 119196054 + 1.25 NA Intergenic AluJo|SINE|Alu -12487 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 247.75-9 chr2 23263959 23264356 + 1.25 NA Intergenic L1ME2|LINE|L1 -121022 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 234.75-39 chr5 173241706 173242077 + 1.25 NA Intergenic Intergenic -6685 NM_001166175 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 213-18 chr15 68844300 68844655 + 1.25 NA Intergenic Intergenic -23582 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 235.5-13 chr11 60045238 60045682 + 1.25 NA intron (NM_173801, intron 3 of 3) intron (NM_173801, intron 3 of 3) 5051 NM_173801 219990 Hs.132310 NM_173801 ENSG00000149507 OOSP2 OOSP2A|PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 170.5-22 chr12 23414954 23415181 + 1.25 NA Intergenic Intergenic 169519 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 159.5-38 chr2 14184881 14185094 + 1.25 NA Intergenic Intergenic 215971 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 194.75-6 chr11 105165862 105166070 + 1.25 NA Intergenic Intergenic -26197 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 200.75-43 chr8 88083416 88083648 + 1.25 NA intron (NM_005941, intron 6 of 9) L1MC5a|LINE|L1 -209517 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 116.75-86 chr9 80893623 80893796 + 1.25 NA Intergenic Intergenic 795826 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 258.25-11 chr2 45044502 45044786 + 1.25 NA Intergenic MLT1M|LTR|ERVL-MaLR -35192 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 221-29 chr3 157910245 157910451 + 1.25 NA Intergenic L2a|LINE|L2 195815 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 136.5-75 chr3 166648941 166649258 + 1.25 NA Intergenic L1MC4|LINE|L1 -249584 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 209.25-59 chrX 46877053 46877351 + 1.25 NA intron (NM_006915, intron 3 of 4) intron (NM_006915, intron 3 of 4) 22502 NR_046101 724087 Hs.679235 NR_046101 ENSG00000204904 LINC01545 CXorf31 long intergenic non-protein coding RNA 1545 ncRNA 316.25-10 chr8 120185397 120185707 + 1.25 NA intron (NM_021110, intron 5 of 47) AluJr|SINE|Alu 60450 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 150-41 chr2 181100225 181100381 + 1.25 NA Intergenic Intergenic -23534 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 148.75-49 chr4 96171637 96171841 + 1.25 NA Intergenic MER2B|DNA|TcMar-Tigger -138964 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 249.5-33 chr8 139236055 139236298 + 1.25 NA Intergenic Intergenic -322135 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 266.5-2 chr1 156934941 156935260 + 1.25 NA 3' UTR (NM_198236, exon 41 of 41) 3' UTR (NM_198236, exon 41 of 41) 1144 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 215-30 chr3 24172500 24172824 + 1.25 NA intron (NM_001354708, intron 4 of 9) intron (NM_001354708, intron 4 of 9) 21338 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 337.5-8 chr5 77424946 77425434 + 1.25 NA intron (NM_001349751, intron 20 of 20) intron (NM_001349751, intron 20 of 20) 67126 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 181.5-8 chr11 41592484 41592711 + 1.25 NA Intergenic Intergenic -121971 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 220-29 chr5 161613831 161614129 + 1.25 NA Intergenic MIR3|SINE|MIR -65576 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 182.5-67 chr7 104274828 104275114 + 1.25 NA Intergenic L2|LINE|L2 -53685 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 155.25-43 chr3 3270122 3270366 + 1.25 NA Intergenic Intergenic -90527 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 312.5-4 chr11 100706531 100706999 + 1.25 NA intron (NM_001367945, intron 1 of 25) L1MB7|LINE|L1 -18810 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 215.75-10 chr2 16683370 16683614 + 1.25 NA Intergenic Intergenic -17658 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 208.25-16 chr2 196216948 196217144 + 1.25 NA exon (NM_001304840, exon 25 of 27) exon (NM_001304840, exon 25 of 27) -42978 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 169.5-62 chr5 11471773 11472119 + 1.25 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 116971 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 134.25-71 chr5 105765474 105765695 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 666110 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 158.5-70 chr3 50050759 50050966 + 1.25 NA intron (NM_001349194, intron 4 of 17) L1MB5|LINE|L1 -38057 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 159.25-30 chr2 11009750 11010009 + 1.25 NA Intergenic Intergenic 97945 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 197.25-64 chr9 118291492 118291690 + 1.25 NA Intergenic Intergenic -388080 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 148.5-45 chr2 53966187 53966353 + 1.25 NA intron (NM_014614, intron 1 of 46) AluSz6|SINE|Alu 4723 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 310.75-10 chr5 8462622 8463175 + 1.25 NA non-coding (NR_039989, exon 2 of 2) non-coding (NR_039989, exon 2 of 2) 1973 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 126-77 chr7 12320759 12320957 + 1.25 NA Intergenic Intergenic 83007 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 226.75-5 chr10 55552434 55552702 + 1.25 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -46474 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 194.25-27 chr2 143492953 143493114 + 1.25 NA intron (NM_018460, intron 9 of 13) AluY|SINE|Alu 363614 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 140.25-59 chr3 153315475 153315672 + 1.25 NA Intergenic L1ME3E|LINE|L1 153347 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 125.75-48 chr3 27734678 27734980 + 1.25 NA Intergenic Intergenic -12114 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 136.75-36 chr15 91213601 91213779 + 1.25 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 111894 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 256-3 chr1 112470256 112470552 + 1.25 NA intron (NM_001291880, intron 1 of 4) AluSx|SINE|Alu 3863 NM_001291880 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 267.5-29 chr6 68935910 68936260 + 1.25 NA intron (NM_001704, intron 4 of 31) intron (NM_001704, intron 4 of 31) 300803 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 154.5-35 chr17 30137450 30137582 + 1.25 NA intron (NM_032141, intron 2 of 6) MLT1I|LTR|ERVL-MaLR -20356 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 155.5-87 chr7 40362111 40362390 + 1.25 NA intron (NM_024728, intron 9 of 14) AluSx|SINE|Alu 227274 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 179.75-22 chr17 32566592 32566749 + 1.25 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 79677 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 124-59 chr5 130646916 130647066 + 1.25 NA Intergenic Intergenic 518265 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 200-37 chr5 35195209 35195446 + 1.25 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 35160 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 230.75-26 chr8 70313532 70313758 + 1.25 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 89745 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 183.25-11 chr12 93676043 93676226 + 1.25 NA Intergenic Intergenic -1237 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 201.75-3 chr1 221930231 221930512 + 1.25 NA intron (NR_149057, intron 1 of 3) L1MA3|LINE|L1 -36039 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 117-85 chr8 111827204 111827403 + 1.25 NA Intergenic Intergenic 450664 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 137.5-81 chr4 41631841 41632042 + 1.25 NA intron (NM_001330672, intron 10 of 31) intron (NM_001330672, intron 10 of 31) 19039 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 122.75-40 chr2 7926887 7927038 + 1.25 NA intron (NR_015405, intron 2 of 2) L1ME4a|LINE|L1 -27307 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 390.5-3 chr4 54381251 54382044 + 1.25 NA Intergenic Intergenic 48755 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 196.75-10 chr14 83698252 83698502 + 1.25 NA Intergenic Intergenic 1055745 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 218-38 chr5 37035437 37035674 + 1.25 NA intron (NM_015384, intron 32 of 45) MER3|DNA|hAT-Charlie 158786 NM_133433 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 202.5-35 chr4 64618486 64618684 + 1.25 NA Intergenic MIR|SINE|MIR -209125 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 195.25-39 chr5 133327363 133327691 + 1.25 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 100179 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 140-45 chr4 60891387 60891514 + 1.25 NA Intergenic Intergenic -31169 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 210.25-41 chr6 97897474 97897666 + 1.25 NA Intergenic Intergenic -126961 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 165.25-50 chr6 48199955 48200215 + 1.25 NA Intergenic Intergenic -131396 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 200-40 chr5 156738811 156739030 + 1.25 NA intron (NM_001128209, intron 6 of 7) MIRb|SINE|MIR -111375 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 248.25-7 chr14 62635351 62635695 + 1.25 NA Intergenic L1MB1|LINE|L1 409935 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 188.75-20 chr2 22486891 22487150 + 1.25 NA Intergenic Intergenic -49459 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 162-34 chr3 124358126 124358312 + 1.25 NA intron (NM_001024660, intron 10 of 59) intron (NM_001024660, intron 10 of 59) -16113 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 170.5-21 chr12 520618 520877 + 1.25 NA intron (NM_173593, intron 1 of 19) AluSx3|SINE|Alu 60808 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 321.75-22 chr8 121412846 121413280 + 1.25 NA Intergenic LTR43B|LTR|ERV1 -226283 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 132.5-22 chr14 40210671 40210980 + 1.25 NA Intergenic Intergenic -743886 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 190.25-35 chr3 193409628 193409866 + 1.25 NA intron (NM_032279, intron 28 of 29) intron (NM_032279, intron 28 of 29) -30994 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 163.5-19 chr11 106717844 106718059 + 1.25 NA intron (NM_000855, intron 6 of 7) intron (NM_000855, intron 6 of 7) 300525 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 238-33 chr7 46543744 46544075 + 1.25 NA Intergenic MER49|LTR|ERV1 153213 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 192.75-31 chr4 59175463 59175711 + 1.25 NA Intergenic Intergenic 162014 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 195.5-93 chr9 71829452 71829709 + 1.25 NA Intergenic MER31A|LTR|ERV1 -61067 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 248.5-32 chr7 52769000 52769355 + 1.25 NA Intergenic L1ME1|LINE|L1 -266456 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 247.75-25 chr8 15290849 15291184 + 1.25 NA Intergenic Intergenic -52585 NM_001322881 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 179.75-40 chr4 55669709 55669914 + 1.25 NA Intergenic AluY|SINE|Alu -33018 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 292.75-5 chr16 75862873 75863156 + 1.25 NA Intergenic Intergenic -136524 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 119.25-52 chr2 99197974 99198189 + 1.25 NA non-coding (NR_028356, exon 7 of 7) non-coding (NR_028356, exon 7 of 7) 16897 NM_145212 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 339.5-11 chr8 139354186 139354629 + 1.25 NA Intergenic L1MEf|LINE|L1 348716 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 165.75-35 chr2 180505660 180505910 + 1.25 NA Intergenic Intergenic -186319 NR_104323 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 131-26 chr18 49143029 49143133 + 1.25 NA intron (NM_001353210, intron 14 of 16) MIRb|SINE|MIR -93313 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 221.25-22 chr22 28549408 28549666 + 1.25 NA intron (NM_001145418, intron 2 of 22) L2b|LINE|L2 89668 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 162-30 chr22 39404616 39404816 + 1.25 NA intron (NM_153497, intron 1 of 10) MER113B|DNA|hAT-Charlie 4936 NM_006116 10454 Hs.507681 NM_006116 ENSG00000100324 TAB1 3'-Tab1|MAP3K7IP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 protein-coding 288.5-10 chr2 125152608 125152891 + 1.25 NA Intergenic L1MD|LINE|L1 965236 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 233.25-25 chr4 102390523 102390752 + 1.25 NA Intergenic L1MB7|LINE|L1 -45155 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 185.5-21 chr11 113702902 113703155 + 1.25 NA intron (NM_001288752, intron 1 of 10) THE1C-int|LTR|ERVL-MaLR 3280 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 143.5-58 chr2 213180099 213180308 + 1.25 NA Intergenic Intergenic -12493 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 134.25-19 chr14 68530696 68530912 + 1.25 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 97983 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 278-16 chr3 62034191 62034579 + 1.25 NA intron (NM_002841, intron 4 of 29) MIR|SINE|MIR 284562 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 112.75-77 chr6 62901596 62901750 + 1.25 NA Intergenic MIRc|SINE|MIR 418304 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 186.5-26 chr18 1832427 1832740 + 1.25 NA Intergenic Intergenic -472954 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 159-50 chr5 12899615 12899776 + 1.25 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 133191 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 206.5-56 chr8 138593268 138593537 + 1.25 NA intron (NM_152888, intron 63 of 64) intron (NM_152888, intron 63 of 64) -95672 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 188.5-53 chr7 138109648 138109843 + 1.25 NA intron (NM_001190907, intron 7 of 7) intron (NM_001190907, intron 7 of 7) -14013 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 161.5-31 chr14 47128288 47128462 + 1.25 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 214871 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 146.25-53 chr3 94722692 94722838 + 1.25 NA Intergenic Intergenic -215498 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 126.5-33 chr14 41400540 41400708 + 1.25 NA Intergenic Intergenic -206232 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 197-35 chr3 76367019 76367207 + 1.25 NA Intergenic Intergenic -581564 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 229.5-10 chr10 97795679 97795896 + 1.25 NA Intergenic Zaphod3|DNA|hAT-Tip100 -23788 NM_003015 6425 Hs.279565 NM_003015 ENSG00000120057 SFRP5 SARP3 secreted frizzled related protein 5 protein-coding 229.75-9 chr14 50826603 50826833 + 1.25 NA intron (NM_016350, intron 2 of 28) intron (NM_016350, intron 2 of 28) 4403 NM_020921 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 167-58 chr6 90925533 90925685 + 1.25 NA Intergenic Intergenic -338537 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 174.75-32 chr3 69989907 69990117 + 1.25 NA Intergenic Intergenic -9732 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 173.25 chr1 7502308 7502589 + 1.25 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -112694 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 149.25-6 chr10 78633347 78633490 + 1.25 NA Intergenic Intergenic 366076 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 262.25-18 chr4 165925950 165926220 + 1.25 NA intron (NM_001204760, intron 1 of 9) Tigger1|DNA|TcMar-Tigger 52848 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 159.5-14 chr11 21690368 21690631 + 1.25 NA Intergenic Intergenic -502586 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 189.25-15 chr16 83519472 83519690 + 1.25 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 11235 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 148.75-68 chr7 87074291 87074482 + 1.25 NA Intergenic L3|LINE|CR1 -14732 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 192.75-27 chr3 111536028 111536335 + 1.25 NA Intergenic Intergenic -6016 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 276.5-10 chr22 36633815 36634495 + 1.25 NA intron (NM_006078, intron 1 of 3) MLT1J2|LTR|ERVL-MaLR 68703 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 116-45 chr3 51721712 51721951 + 1.25 NA Intergenic HAL1b|LINE|L1 14763 NM_001349117 2912 Hs.121510 NM_000839 ENSG00000164082 GRM2 GLUR2|GPRC1B|MGLUR2|mGlu2 glutamate metabotropic receptor 2 protein-coding 149.25-63 chr8 81088195 81088447 + 1.25 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 23747 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 249-16 chr19 4233716 4234016 + 1.25 NA intron (NM_005755, intron 3 of 4) L2a|LINE|L2 4343 NM_005755 10148 Hs.501452 NM_005755 ENSG00000105246 EBI3 IL-27B|IL27B|IL35B Epstein-Barr virus induced 3 protein-coding 164.75-12 chr11 42846044 42846235 + 1.25 NA Intergenic Intergenic 423230 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 207-46 chr5 125468421 125468704 + 1.25 NA Intergenic Intergenic -24699 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 126.75-76 chr5 105567586 105567748 + 1.25 NA Intergenic L1MB7|LINE|L1 468193 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 154.25-25 chr13 46905443 46905631 + 1.25 NA Intergenic Intergenic -8461 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 140.25-26 chr16 46959975 46960195 + 1.25 NA intron (NM_005880, intron 6 of 8) intron (NM_005880, intron 6 of 8) 13589 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 183.75-23 chr15 68714151 68714418 + 1.25 NA intron (NM_006091, intron 6 of 11) MIRb|SINE|MIR 72781 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 121-62 chr6 55942768 55942890 + 1.25 NA Intergenic Intergenic -67239 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 200.75-6 chr10 49679397 49679670 + 1.25 NA promoter-TSS (NM_001042427) promoter-TSS (NM_001042427) -118 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 181.25-34 chr2 177912810 177912991 + 1.25 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) 9937 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 173.75-22 chr20 8397686 8397908 + 1.25 NA intron (NM_182734, intron 3 of 32) L1MC5a|LINE|L1 149093 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 211.25-18 chr2 45396326 45396609 + 1.25 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -141526 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 183.25-5 chr10 101009259 101009457 + 1.25 NA intron (NM_001195263, intron 15 of 16) intron (NM_001195263, intron 15 of 16) 6861 NM_001318101 84445 Hs.523221 NM_032429 ENSG00000107816 LZTS2 LAPSER1 leucine zipper tumor suppressor 2 protein-coding 146-42 chr4 116954909 116955122 + 1.25 NA Intergenic L1M4b|LINE|L1 130561 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 165.25-7 chr10 22840006 22840196 + 1.25 NA Intergenic Intergenic -87923 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 126.75-89 chr7 77562392 77562545 + 1.25 NA intron (NM_001131009, intron 1 of 16) intron (NM_001131009, intron 1 of 16) 24425 NM_001131008 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 182.25-27 chr2 197524600 197524852 + 1.25 NA intron (NM_199482, intron 2 of 7) AluJo|SINE|Alu 8428 NM_001204094 25843 Hs.633165 NM_015387 ENSG00000115540 MOB4 2C4D|CGI-95|MOB1|MOB3|MOBKL3|PHOCN|PREI3 MOB family member 4, phocein protein-coding 139.5-80 chr5 91583267 91583455 + 1.25 NA Intergenic FLAM_C|SINE|Alu -200044 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 199.75-12 chr16 80068896 80069143 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR 273770 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 180.75-51 chr5 110276943 110277168 + 1.25 NA Intergenic MER63D|DNA|hAT-Blackjack 236860 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 194.25-17 chr14 77478784 77479073 + 1.25 NA intron (NM_182509, intron 3 of 5) MER91A|DNA|hAT-Tip100 19888 NM_199296 145501 Hs.29742 NM_182509 ENSG00000100593 ISM2 TAIL1|THSD3 isthmin 2 protein-coding 138.25-57 chr3 77570857 77571065 + 1.25 NA intron (NM_001290039, intron 14 of 26) intron (NM_001290039, intron 14 of 26) 472949 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 185.5-37 chr2 16046684 16046962 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -3604 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 168.5-58 chr4 169752788 169753157 + 1.25 NA intron (NM_017867, intron 2 of 7) intron (NM_017867, intron 2 of 7) 4972 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 214.5-65 chrX 22762185 22762438 + 1.25 NA intron (NR_073010, intron 3 of 11) intron (NR_073010, intron 3 of 11) -237649 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 194.5-46 chr3 28238168 28238553 + 1.25 NA Intergenic Intergenic -3259 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 160.5-33 chr2 22941677 22941869 + 1.25 NA Intergenic Intergenic 405294 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 265.5-18 chr3 132126302 132126595 + 1.25 NA Intergenic Intergenic -86842 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 149.5-82 chr5 85023682 85023858 + 1.25 NA Intergenic L1PA13|LINE|L1 -638890 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 246-18 chr4 71936162 71936496 + 1.25 NA Intergenic Intergenic -95475 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 185.5-20 chr11 82977096 82977289 + 1.25 NA 3' UTR (NM_001286060, exon 5 of 5) 3' UTR (NM_001286060, exon 5 of 5) 57082 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 304.5-17 chr6 26299962 26300322 + 1.25 NA Intergenic Intergenic -14643 NM_003543 8365 Hs.591790 NM_003543 ENSG00000158406 HIST1H4H H4/h|H4FH histone cluster 1 H4 family member h protein-coding 238-6 chr10 81572963 81573186 + 1.25 NA Intergenic L1PA15|LINE|L1 -302120 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 212.75-11 chr17 35097868 35098111 + 1.25 NA non-coding (NR_037712, exon 8 of 8) non-coding (NR_037712, exon 8 of 8) -8763 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 188.25-21 chr18 67400622 67400824 + 1.25 NA Intergenic Intergenic -115823 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 183-42 chr22 26537040 26537205 + 1.25 NA intron (NM_003595, intron 3 of 6) intron (NM_003595, intron 3 of 6) 18201 NR_031615 100313914 NR_031615 ENSG00000221760 MIR548J MIRN548J|hsa-mir-548j microRNA 548j ncRNA 137.5-4 chr1 179055768 179055945 + 1.25 NA intron (NM_001324310, intron 4 of 7) L2c|LINE|L2 -26214 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 158.25-50 chr5 58150558 58150725 + 1.25 NA Intergenic Charlie17a|DNA|hAT-Charlie -28300 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 159-71 chrX 149870265 149870447 + 1.25 NA intron (NR_109813, intron 2 of 2) Ricksha_a|DNA|MULE-MuDR -10785 NM_001166400 4107 Hs.522803 NM_005364 ENSG00000156009 MAGEA8 CT1.8|MAGE8 MAGE family member A8 protein-coding 135.25-68 chr4 107000674 107000910 + 1.25 NA intron (NM_014421, intron 1 of 3) MIRb|SINE|MIR 35521 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 152-23 chr14 53365695 53365864 + 1.25 NA Intergenic L1MB7|LINE|L1 212425 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 163.75-42 chr3 96489489 96489716 + 1.25 NA Intergenic L1PA15|LINE|L1 129638 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 263.5-10 chr15 65655367 65655852 + 1.25 NA 3' UTR (NM_001301032, exon 8 of 8) 3' UTR (NM_001301032, exon 8 of 8) 12730 NM_001254740 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 168.5-41 chr2 65840844 65841057 + 1.25 NA Intergenic L1MA8|LINE|L1 -408351 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 351.25 chr4 49710233 49710969 + 1.25 NA Intergenic SAR|Satellite|Satellite 723959 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 198.5-51 chr7 25681138 25681312 + 1.25 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -10494 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 237.25-31 chr8 130618503 130618759 + 1.25 NA Intergenic L1PA14|LINE|L1 -174957 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 190.5-19 chr12 32254829 32255015 + 1.25 NA intron (NR_148725, intron 2 of 9) intron (NR_148725, intron 2 of 9) -144636 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 214-40 chr8 17511479 17511761 + 1.25 NA intron (NM_001370338, intron 2 of 12) intron (NM_001370338, intron 2 of 12) 14532 NM_001370338 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 241.75-7 chr12 72921605 72921899 + 1.25 NA Intergenic Intergenic -237438 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 257.5-31 chr8 89193441 89193671 + 1.25 NA Intergenic MER63A|DNA|hAT-Blackjack 564155 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 131-72 chr7 84168228 84168394 + 1.25 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 26478 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 170.25-66 chr8 127392266 127392465 + 1.25 NA intron (NR_117099, intron 3 of 3) L2a|LINE|L2 -8034 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 196.5-4 chr1 22361834 22362031 + 1.25 NA Intergenic Intergenic -89919 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 149.25-42 chr3 69181850 69182080 + 1.25 NA intron (NM_015123, intron 20 of 22) intron (NM_015123, intron 20 of 22) -59370 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 218.5-11 chr11 73381700 73381947 + 1.25 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 5155 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 278.25-3 chr1 117709560 117709975 + 1.25 NA Intergenic MER53|DNA|hAT 103719 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 202.25-33 chr5 53715527 53715825 + 1.25 NA Intergenic Intergenic 104006 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 193.25-21 chr21 31488084 31488280 + 1.25 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 70905 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 197-21 chr18 8268843 8269058 + 1.25 NA intron (NM_002845, intron 17 of 30) L1MA9|LINE|L1 98084 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 164.25-35 chr2 173809055 173809227 + 1.25 NA Intergenic Intergenic 154739 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 261.25-7 chr4 23595936 23596312 + 1.25 NA Intergenic Intergenic 285168 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 141.75-82 chr7 106049099 106049238 + 1.25 NA Intergenic Intergenic 63144 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 228.25-30 chr5 115806871 115807115 + 1.25 NA intron (NM_001323565, intron 4 of 5) HAL1|LINE|L1 9664 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 127-69 chr4 62959111 62959347 + 1.25 NA Intergenic L2a|LINE|L2 -797464 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 212.5-48 chr5 166958268 166958545 + 1.25 NA Intergenic Intergenic -32036 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 145.5-83 chr6 108206206 108206355 + 1.25 NA Intergenic L1MCb|LINE|L1 38257 NM_001286102 7101 Hs.157688 NM_003269 ENSG00000112333 NR2E1 TLL|TLX|XTLL nuclear receptor subfamily 2 group E member 1 protein-coding 173.5-5 chr1 184236080 184236477 + 1.25 NA Intergenic AluSx3|SINE|Alu -150751 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 295.5-2 chr1 150979115 150979467 + 1.25 NA Intergenic Intergenic -3001 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding 322.75-3 chr14 36455940 36456325 + 1.25 NA Intergenic L2a|LINE|L2 57403 NR_161363 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 117-28 chr18 43016898 43017063 + 1.25 NA intron (NM_001272077, intron 2 of 5) intron (NM_001272077, intron 2 of 5) 98705 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 127.25-46 chr2 26228383 26228558 + 1.25 NA intron (NM_000182, intron 7 of 19) L1ME1|LINE|L1 16162 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 130.25-51 chr20 6750477 6750653 + 1.25 NA Intergenic HAL1b|LINE|L1 -14429 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 138.25-79 chr7 13504601 13504870 + 1.25 NA Intergenic L1MEd|LINE|L1 481779 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 117.75-15 chr11 101207409 101207563 + 1.25 NA Intergenic L1MA5A|LINE|L1 -77673 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 127.25-10 chr1 233607179 233607297 + 1.25 NA Intergenic Intergenic -6868 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 157-11 chr11 77026707 77026915 + 1.25 NA TTS (NM_018367) TTS (NM_018367) -7587 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 152.5-63 chr22 27203001 27203140 + 1.25 NA Intergenic Intergenic 15554 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 290 chr1 66938888 66939247 + 1.25 NA intron (NM_001077701, intron 1 of 12) intron (NM_001077701, intron 1 of 12) 8811 NM_001077701 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 234.5-11 chr12 1563937 1564155 + 1.25 NA Intergenic Intergenic 30535 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 279.25-21 chr8 36035787 36036238 + 1.25 NA Intergenic Intergenic -325692 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 179.5-19 chr11 78114092 78114275 + 1.25 NA intron (NM_001007027, intron 6 of 13) intron (NM_001007027, intron 6 of 13) 25443 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 114.75-30 chr14 53438561 53438786 + 1.25 NA Intergenic Intergenic 285319 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 270.5-15 chr2 37466982 37467217 + 1.25 NA Intergenic L1ME2|LINE|L1 122469 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 206-22 chr3 143763969 143764163 + 1.25 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 84402 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 244.75 chr1 77367257 77367452 + 1.25 NA intron (NM_012093, intron 6 of 13) AluJb|SINE|Alu 84267 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 178-24 chr2 51319172 51319395 + 1.25 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 286682 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 213.75-41 chr6 126048984 126049278 + 1.25 NA intron (NR_146803, intron 15 of 16) intron (NR_146803, intron 15 of 16) 62591 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 209.75-41 chr7 61944809 61945105 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 1359099 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 128.25-15 chr10 94917814 94918005 + 1.25 NA Intergenic L1MA3|LINE|L1 -20749 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 140.75-47 chr5 13813997 13814130 + 1.25 NA intron (NM_001369, intron 43 of 78) intron (NM_001369, intron 43 of 78) 130417 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 152.75-17 chr14 37097764 37097936 + 1.25 NA intron (NM_001171170, intron 1 of 10) AluSq2|SINE|Alu -74176 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 116.25-75 chr5 114508597 114508770 + 1.25 NA intron (NR_130785, intron 3 of 12) L1MC4a|LINE|L1 -67358 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 267.5-20 chr3 178519735 178520141 + 1.25 NA Intergenic Intergenic -16498 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 190.25-45 chr5 122590434 122590688 + 1.25 NA Intergenic Intergenic -5961 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 150.25-18 chr13 109664845 109665034 + 1.25 NA Intergenic Intergenic -63335 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 225-18 chr21 32104385 32104740 + 1.25 NA Intergenic MER1A|DNA|hAT-Charlie -18267 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 172.75-48 chr8 107969310 107969487 + 1.25 NA intron (NM_001282863, intron 2 of 4) intron (NM_001282863, intron 2 of 4) 112541 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 190-43 chr6 120302514 120302683 + 1.25 NA Intergenic Intergenic 287419 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 221.25-10 chr15 83376624 83376940 + 1.25 NA Intergenic Intergenic -70446 NM_001324184 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 159.75-56 chr6 37540549 37540723 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR 14786 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 334-7 chr4 48199818 48200112 + 1.25 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) -65715 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 233.5-11 chr11 127557050 127557269 + 1.25 NA Intergenic L1PA8|LINE|L1 286089 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 119.25-97 chr8 66904504 66904657 + 1.25 NA intron (NM_001136160, intron 13 of 13) MIRc|SINE|MIR 17969 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 266.5-18 chr3 121152408 121152761 + 1.25 NA intron (NR_145517, intron 8 of 8) intron (NR_145517, intron 8 of 8) 102944 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 217.25-4 chr10 80329211 80329448 + 1.25 NA Intergenic Intergenic -15416 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 273.5-15 chr4 51928740 51928998 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL 85290 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 118.25-44 chr18 76802371 76802557 + 1.25 NA intron (NR_040024, intron 2 of 2) AluSx|SINE|Alu 19831 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 189-8 chr1 222327183 222327522 + 1.25 NA Intergenic MIR|SINE|MIR 220752 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 224.75-19 chr5 172633206 172633544 + 1.25 NA Intergenic MIR|SINE|MIR -7888 NM_001308177 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|RNF67B|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 191.5-45 chr4 44183398 44183681 + 1.25 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 166477 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 231-39 chr7 111809598 111809910 + 1.25 NA intron (NM_001363540, intron 28 of 52) intron (NM_001363540, intron 28 of 52) 1249 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 164.25-50 chr5 152320727 152320889 + 1.25 NA Intergenic Intergenic 84471 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 237-24 chr3 116548370 116548597 + 1.25 NA Intergenic L1ME1|LINE|L1 -3990 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 231-29 chr5 45332497 45332747 + 1.25 NA intron (NM_021072, intron 5 of 7) L1MA2|LINE|L1 363758 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 220.25-38 chr6 132265291 132265643 + 1.25 NA Intergenic L1MA7|LINE|L1 131489 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 125.75-65 chr6 134284281 134284409 + 1.25 NA intron (NM_001143676, intron 1 of 13) AluSz|SINE|Alu 33713 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 305.5-19 chr8 135846837 135847300 + 1.25 NA Intergenic LTR79|LTR|ERVL 389612 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 253.75-14 chr5 150222016 150222284 + 1.25 NA 3' UTR (NM_001363989, exon 20 of 20) 3' UTR (NM_001363989, exon 20 of 20) 32088 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 240.75-31 chr8 64178502 64178858 + 1.25 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 189878 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 129.5-81 chr6 36172236 36172386 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL -24433 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 128.25-45 chr3 15080274 15080429 + 1.25 NA intron (NM_001302378, intron 9 of 12) intron (NM_001302378, intron 9 of 12) -15036 NR_135247 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 127.25-40 chr17 58862616 58862724 + 1.25 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 106801 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 234-39 chr7 142037396 142037777 + 1.25 NA intron (NM_004668, intron 18 of 47) intron (NM_004668, intron 18 of 47) 41707 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 265-16 chr2 40655568 40655939 + 1.25 NA Intergenic Intergenic -143318 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 132.75-71 chr4 54436819 54436937 + 1.25 NA Intergenic Intergenic 103986 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 149.25-3 chr1 109996629 109996841 + 1.25 NA intron (NM_001242673, intron 1 of 16) Tigger3b|DNA|TcMar-Tigger -4192 NM_001242674 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 145.5-95 chr8 142382170 142382325 + 1.25 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 20935 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 238.75-3 chr12 128502805 128503109 + 1.25 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 208865 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 188.25-11 chr15 46764699 46764989 + 1.25 NA Intergenic Intergenic -419245 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 183-26 chr14 82259120 82259496 + 1.25 NA Intergenic Intergenic -383324 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 136.5-27 chr12 83261504 83261638 + 1.25 NA Intergenic L1ME3C|LINE|L1 574416 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 168.5-61 chr5 101763608 101763845 + 1.25 NA Intergenic Intergenic 532558 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 226-3 chr10 50279242 50279466 + 1.25 NA Intergenic Intergenic -30744 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 203-37 chr7 91347070 91347376 + 1.25 NA Intergenic Intergenic 82790 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 124.25-67 chr5 46270229 46270388 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -573928 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 179.75-49 chr6 124226338 124226604 + 1.25 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -56534 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 156-44 chr22 48188933 48189107 + 1.25 NA Intergenic L1MD2|LINE|L1 -85344 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 138.25-47 chr2 145736152 145736285 + 1.25 NA Intergenic Intergenic -850839 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 154.5-17 chr10 106622695 106622858 + 1.25 NA intron (NM_001206569, intron 19 of 25) MIR|SINE|MIR 482611 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 239.25-12 chr15 86186912 86187177 + 1.25 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) -70327 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 156.75-38 chr17 27952162 27952352 + 1.25 NA intron (NR_146896, intron 2 of 4) intron (NR_146896, intron 2 of 4) 39450 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 176.5-26 chr14 42658612 42658838 + 1.25 NA Intergenic Intergenic 1051869 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 196.25-31 chr2 63459042 63459321 + 1.25 NA intron (NR_148704, intron 7 of 18) L1MA4A|LINE|L1 -21174 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 258-3 chr1 64045076 64045334 + 1.25 NA intron (NM_005012, intron 2 of 8) Charlie1a|DNA|hAT-Charlie 67000 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 292.25-9 chr5 100008574 100008909 + 1.25 NA Intergenic Intergenic 379513 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 296-18 chr5 53956893 53957259 + 1.25 NA intron (NM_019087, intron 4 of 4) L1M4|LINE|L1 -5477 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 206.5-44 chr6 8063339 8063579 + 1.25 NA intron (NR_037618, intron 3 of 6) intron (NR_037618, intron 3 of 6) 930 NM_201280 63915 Hs.719272 NM_201280 ENSG00000188428 BLOC1S5 BLOS5|MU|MUTED biogenesis of lysosomal organelles complex 1 subunit 5 protein-coding 179.5-8 chr1 93703649 93704059 + 1.25 NA intron (NM_001261408, intron 3 of 13) L2a|LINE|L2 -22017 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 154-28 chr17 72726178 72726425 + 1.25 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -85829 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 211.5-5 chr11 78827236 78827512 + 1.25 NA intron (NM_001098816, intron 12 of 33) L2c|LINE|L2 -252510 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 173-46 chr5 84215654 84215828 + 1.25 NA intron (NM_001278642, intron 2 of 9) L2a|LINE|L2 169126 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 304.25-8 chr19 27906600 27906948 + 1.25 NA intron (NR_146735, intron 4 of 7) AluJb|SINE|Alu -112834 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 174.75-21 chr14 58628117 58628302 + 1.25 NA Intergenic Intergenic -5859 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 164.75-56 chr5 41415576 41415767 + 1.25 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 94930 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 212.25-20 chr18 2806945 2807262 + 1.25 NA Intergenic L1M4b|LINE|L1 -39903 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 124.25-27 chr13 97939368 97939496 + 1.25 NA Intergenic L1ME3B|LINE|L1 -14243 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 186.25-12 chr11 116111545 116111744 + 1.25 NA Intergenic Intergenic -351444 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 155-39 chr4 13604466 13604645 + 1.25 NA exon (NM_148894, exon 10 of 26) exon (NM_148894, exon 10 of 26) 23170 NM_148894 259282 Hs.744935 NM_148894 ENSG00000038219 BOD1L1 BOD1L|FAM44A biorientation of chromosomes in cell division 1 like 1 protein-coding 115.5-11 chr10 116155128 116155352 + 1.25 NA intron (NM_145793, intron 3 of 8) MIRb|SINE|MIR 39549 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 297.25-17 chr7 20189340 20189692 + 1.25 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 27868 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 133-69 chr8 133754203 133754369 + 1.25 NA Intergenic Intergenic 23066 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 150.25-37 chr2 74693444 74693728 + 1.25 NA Intergenic L1ME4a|LINE|L1 39339 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 116-61 chr6 52695012 52695113 + 1.25 NA Intergenic L1MC5|LINE|L1 23949 NM_014051 28978 Hs.94896 NM_014051 ENSG00000096092 TMEM14A C6orf73|PTD011 transmembrane protein 14A protein-coding 272.5 chr10 19005532 19005833 + 1.25 NA Intergenic Intergenic -43119 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 137.5 chr1 46293409 46293584 + 1.25 NA intron (NM_006369, intron 3 of 9) AluJo|SINE|Alu 9870 NM_006369 10489 Hs.144941 NM_006369 ENSG00000132128 LRRC41 MUF1|PP7759 leucine rich repeat containing 41 protein-coding 314.5-9 chr6 36909741 36910068 + 1.25 NA intron (NM_152734, intron 3 of 7) intron (NM_152734, intron 3 of 7) 23952 NM_152734 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 164.75-36 chr2 116840105 116840305 + 1.25 NA Intergenic Intergenic -974486 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 357.25-7 chr9 31406007 31406329 + 1.25 NA Intergenic Intergenic -24678 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 179.5-78 chr5 178715783 178715973 + 1.25 NA intron (NM_005649, intron 4 of 4) L2|LINE|L2 14781 NM_001324339 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 228-31 chr5 26824045 26824361 + 1.25 NA Intergenic Intergenic 214383 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 217.5-2 chr1 100272071 100272264 + 1.25 NA intron (NM_003729, intron 4 of 10) L1ME1|LINE|L1 -5993 NR_110434 100506007 Hs.192268 NR_110434 RTCA-AS1 - RTCA antisense RNA 1 ncRNA 253.75-4 chr10 126537449 126537808 + 1.25 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) -16135 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 134.75-75 chr8 128552460 128552647 + 1.25 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 12126 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 175.25-26 chr2 67848008 67848221 + 1.25 NA Intergenic Intergenic -22552 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 241.25-17 chr6 71371219 71371627 + 1.25 NA Intergenic L1ME3A|LINE|L1 5608 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 165.75-29 chr18 13402512 13402847 + 1.25 NA intron (NM_181482, intron 3 of 5) L2a|LINE|L2 24855 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 231.5-7 chr10 110076399 110076657 + 1.25 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -68147 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 175.25-56 chr8 108010346 108010588 + 1.25 NA intron (NM_178565, intron 2 of 5) MamGypLTR2b|LTR|Gypsy 71472 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 211-12 chr14 51494776 51495015 + 1.25 NA intron (NM_001042481, intron 1 of 14) MLT-int|LTR|ERVL-MaLR 5767 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 175.25-15 chr12 23416724 23416912 + 1.25 NA Intergenic Intergenic 167768 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 190.25-23 chr2 153393083 153393281 + 1.25 NA Intergenic Intergenic 85580 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 198.5-57 chr8 138461983 138462163 + 1.25 NA intron (NM_001362965, intron 1 of 19) (TGA)n|Simple_repeat|Simple_repeat 35188 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 194-33 chr6 49902529 49902826 + 1.25 NA Intergenic Intergenic -25581 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 180-65 chr7 103791076 103791346 + 1.25 NA intron (NM_005045, intron 3 of 64) L1MB7|LINE|L1 198305 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 218.25-41 chr6 64242956 64243192 + 1.25 NA intron (NM_001292009, intron 30 of 43) (AT)n|Simple_repeat|Simple_repeat 436238 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 297-6 chr11 17573487 17573988 + 1.25 NA intron (NM_001277269, intron 18 of 54) L2b|LINE|L2 26364 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 228.5-38 chr9 29627178 29627409 + 1.25 NA Intergenic AluSc8|SINE|Alu -413692 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 218.75-16 chr14 67191342 67191775 + 1.25 NA intron (NM_173526, intron 1 of 8) intron (NM_173526, intron 1 of 8) 2118 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 145.75-46 chr20 48463514 48463867 + 1.25 NA Intergenic Intergenic 103779 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 146.25-55 chr4 93767383 93767513 + 1.25 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -61305 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 284.5-7 chr10 118889178 118889479 + 1.25 NA Intergenic MIRb|SINE|MIR -134358 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 280.75-14 chr7 28426194 28426526 + 1.25 NA intron (NM_182898, intron 1 of 10) MIRb|SINE|MIR -9255 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 116.25-92 chr8 89802320 89802494 + 1.25 NA Intergenic Charlie1b|DNA|hAT-Charlie 44591 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 286-19 chr4 30841218 30841698 + 1.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 121089 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 144.5-82 chr4 112766518 112766661 + 1.25 NA intron (NM_001354269, intron 1 of 43) MLT1K|LTR|ERVL-MaLR -51408 NM_001354256 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 243.75-16 chr3 16257556 16257880 + 1.25 NA 3' UTR (NM_001047434, exon 2 of 2) 3' UTR (NM_001047434, exon 2 of 2) 7225 NM_001047434 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 112.75-33 chr15 88274628 88274746 + 1.25 NA Intergenic Intergenic -17948 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 271.5-16 chr3 4516837 4517097 + 1.25 NA intron (NM_001168272, intron 3 of 60) intron (NM_001168272, intron 3 of 60) 23619 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 261.25-11 chr6 72812745 72813132 + 1.25 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 154815 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 195.25-45 chr7 84221525 84221761 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -26854 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 151.75-24 chr13 92883709 92883982 + 1.25 NA Intergenic Intergenic -161496 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 262-19 chr2 161978530 161978876 + 1.25 NA intron (NM_001354451, intron 25 of 25) (TC)n|Simple_repeat|Simple_repeat 95512 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 148.25 chr1 12144017 12144161 + 1.25 NA 3' UTR (NM_001281430, exon 14 of 14) 3' UTR (NM_001281430, exon 14 of 14) -22854 NR_107000 102465836 NR_107000 ENSG00000283789 MIR7846 hsa-mir-7846 microRNA 7846 ncRNA 153.75-3 chr1 42079198 42079327 + 1.25 NA Intergenic L1MA4A|LINE|L1 -43328 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 260-22 chr3 45769686 45770019 + 1.25 NA intron (NM_022405, intron 6 of 9) L1ME3Cz|LINE|L1 26684 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 197.5-17 chr14 59153871 59154075 + 1.25 NA Intergenic Intergenic -34694 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 155.25-69 chr7 86475093 86475355 + 1.25 NA Intergenic Intergenic -168685 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 207.5-44 chr4 71245332 71245764 + 1.25 NA intron (NM_001098484, intron 2 of 25) L2b|LINE|L2 58262 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 233.25-27 chr5 38849407 38849834 + 1.25 NA intron (NM_003999, intron 1 of 17) intron (NM_003999, intron 1 of 17) 3608 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 166.5-19 chr10 77042694 77043024 + 1.25 NA intron (NM_001271519, intron 14 of 28) intron (NM_001271519, intron 14 of 28) -97972 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 186.75-58 chr7 17831868 17832030 + 1.25 NA TTS (NM_001350868) TTS (NM_001350868) 108545 NM_001350863 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 139.25-88 chr9 106097966 106098102 + 1.25 NA Intergenic Intergenic 403493 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 196.5-55 chr5 9770071 9770313 + 1.25 NA intron (NR_027112, intron 4 of 12) L1MA3|LINE|L1 -84185 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 186-26 chr2 11556068 11556353 + 1.25 NA intron (NM_033090, intron 1 of 10) intron (NM_033090, intron 1 of 10) 13524 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 141.5-107 chr7 50550928 50551051 + 1.25 NA intron (NM_001082971, intron 1 of 14) intron (NM_001082971, intron 1 of 14) 10082 NM_001242886 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 152.25-43 chr4 31633513 31633669 + 1.25 NA Intergenic MIRc|SINE|MIR 127047 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 192.25-2 chr1 40381766 40381922 + 1.25 NA intron (NM_001198978, intron 1 of 9) intron (NM_001198978, intron 1 of 9) 7211 NM_001198978 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 204.5-60 chr7 72121623 72121845 + 1.25 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 215657 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 264.5-10 chr15 63127061 63127348 + 1.25 NA intron (NM_032857, intron 3 of 5) intron (NM_032857, intron 3 of 5) 5343 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 280.5-22 chr5 179707197 179707478 + 1.25 NA intron (NM_001024649, intron 4 of 14).2 AluY|SINE|Alu 8370 NM_001746 821 Hs.567968 NM_001746 ENSG00000127022 CANX CNX|IP90|P90 calnexin protein-coding 203.5-44 chr5 97512031 97512400 + 1.25 NA intron (NR_105028, intron 1 of 3) intron (NR_105028, intron 1 of 3) 7519 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 189.75-11 chr12 89252783 89252992 + 1.25 NA Intergenic Intergenic 99614 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 217.25-40 chrX 102010353 102010706 + 1.25 NA Intergenic Intergenic -78502 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 202.75-34 chr8 119081293 119081639 + 1.25 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -12684 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 166-44 chr4 38201443 38201600 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie 81567 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 186.75-16 chr14 73896804 73896992 + 1.25 NA intron (NR_040251, intron 4 of 11) L2|LINE|L2 10039 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 230.5-40 chr5 22642338 22642531 + 1.25 NA intron (NM_004061, intron 1 of 14) MamSINE1|SINE|tRNA-RTE 210910 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 144.5-52 chr2 12258122 12258299 + 1.25 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 59080 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 261.75-6 chr12 10593286 10593655 + 1.25 NA intron (NR_028045, intron 5 of 6) Charlie21a|DNA|hAT-Charlie 6365 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 138.25-75 chr5 114393510 114393853 + 1.25 NA intron (NM_001278204, intron 2 of 6) L1ME4b|LINE|L1 31362 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 265.25-13 chr15 59925976 59926378 + 1.25 NA Intergenic Intergenic -78134 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 146.5-34 chr16 9193629 9193783 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR 102062 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 200.75-48 chr9 37839467 37839741 + 1.25 NA intron (NM_001286810, intron 2 of 6) intron (NM_001286810, intron 2 of 6) 38807 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 200.25-32 chr3 99540636 99540813 + 1.25 NA Intergenic Intergenic -97870 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 228-10 chr12 80279877 80280137 + 1.25 NA intron (NM_001368062, intron 31 of 62) L1PA15|LINE|L1 70554 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 148.75-14 chr12 125889282 125889463 + 1.25 NA Intergenic Intergenic 94002 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 230.5-12 chr13 74361845 74362029 + 1.25 NA Intergenic L1MC5a|LINE|L1 57178 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 180.5-13 chr11 11476585 11476852 + 1.25 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) -123468 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 188-2 chr10 92620305 92620579 + 1.25 NA intron (NM_004523, intron 9 of 21) L1MC5|LINE|L1 27312 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 248-13 chr2 159831747 159832075 + 1.25 NA intron (NM_002349, intron 27 of 34) intron (NM_002349, intron 27 of 34) -33656 NM_001198763 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 236-24 chr21 31870669 31870991 + 1.25 NA Intergenic Intergenic -2190 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 300.5-5 chr15 60508386 60508742 + 1.25 NA intron (NM_134260, intron 6 of 11) MIR|SINE|MIR 29386 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 139-27 chr2 16291156 16291367 + 1.25 NA Intergenic Charlie25|DNA|hAT-Charlie 240834 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 253.5-40 chr7 25593110 25593411 + 1.25 NA TTS (NR_157808) TTS (NR_157808) 69880 NR_157826 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 234.5-17 chr17 29870556 29870897 + 1.25 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -59177 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 151.75-68 chr7 3557208 3557501 + 1.25 NA intron (NM_152744, intron 1 of 44) L1MDb|LINE|L1 256102 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 207.5-51 chr5 146866749 146867079 + 1.25 NA intron (NM_181678, intron 2 of 10) Tigger13a|DNA|TcMar-Tigger 11871 NM_001271948 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 134.25-80 chr6 152381156 152381291 + 1.25 NA exon (NM_033071, exon 56 of 146) exon (NM_033071, exon 56 of 146) 693 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 284.5-4 chr10 70282170 70282531 + 1.25 NA intron (NM_022146, intron 1 of 3) L3|LINE|CR1 1654 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 264-13 chr2 88347787 88348070 + 1.25 NA Intergenic MLT1G1|LTR|ERVL-MaLR 104765 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 201-41 chr5 40174080 40174277 + 1.25 NA Intergenic LTR2B|LTR|ERV1 121887 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 252.5-2 chr10 62632783 62633101 + 1.25 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 112494 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 206.25-4 chr10 26512083 26512369 + 1.25 NA intron (NM_019043, intron 7 of 14) intron (NM_019043, intron 7 of 14) 67081 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 131.5-37 chr2 11392146 11392294 + 1.25 NA Intergenic Intergenic -1761 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 245.75-14 chr5 3024953 3025251 + 1.25 NA Intergenic Intergenic 107248 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 178.5-9 chr10 124119266 124119565 + 1.25 NA Intergenic Intergenic -25817 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 188.25-30 chr3 3881255 3881439 + 1.25 NA Intergenic LTR16C|LTR|ERVL -80472 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 136.75-99 chr7 133193856 133194037 + 1.25 NA Intergenic MER52A|LTR|ERV1 -59121 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 177-15 chr15 86105308 86105579 + 1.25 NA intron (NR_120368, intron 3 of 5) intron (NR_120368, intron 3 of 5) 11274 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 164.75-44 chr3 101192878 101193029 + 1.25 NA Intergenic Intergenic 127622 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 209.5-38 chr5 15553347 15553645 + 1.25 NA intron (NM_001278317, intron 1 of 3) L2b|LINE|L2 52058 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 268.25-3 chr12 31735490 31735828 + 1.25 NA Intergenic AluSz6|SINE|Alu -6485 NM_001278411 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 174.25-10 chr10 66560661 66560923 + 1.25 NA intron (NM_001127384, intron 10 of 17) MLT1A0|LTR|ERVL-MaLR -365244 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 295.75-9 chr3 49753610 49754070 + 1.25 NA intron (NM_153273, intron 1 of 5) intron (NM_153273, intron 1 of 5) -29866 NM_013334 29925 Hs.567488 NM_013334 ENSG00000173540 GMPPB LGMDR19|MDDGA14|MDDGB14|MDDGC14 GDP-mannose pyrophosphorylase B protein-coding 114-78 chr6 121781344 121781492 + 1.25 NA Intergenic Intergenic 345772 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 172.25-58 chr4 86963605 86963798 + 1.25 NA intron (NM_001166693, intron 2 of 20) L2b|LINE|L2 28699 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 160.75-15 chr12 42620113 42620322 + 1.25 NA intron (NR_110042, intron 5 of 5) LTR49-int|LTR|ERV1 26281 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LINC02402 - long intergenic non-protein coding RNA 2402 ncRNA 201.5-66 chr8 121349413 121349648 + 1.25 NA Intergenic MIRb|SINE|MIR -289816 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 195-24 chr17 52023942 52024178 + 1.25 NA intron (NM_001082533, intron 3 of 9) L1MEg|LINE|L1 134654 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 190-20 chr18 74003768 74003976 + 1.25 NA Intergenic Intergenic 143962 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 115.25-26 chr12 114080083 114080250 + 1.25 NA Intergenic Intergenic -113841 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 250-12 chr17 53528277 53528650 + 1.25 NA Intergenic Intergenic -294464 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 168.25-62 chr8 68502128 68502458 + 1.25 NA intron (NR_146187, intron 4 of 13) L1MC5|LINE|L1 -170802 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 265-2 chr10 11113184 11113572 + 1.25 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -7890 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 175.25-14 chr11 73623485 73623716 + 1.25 NA Intergenic Intergenic -22981 NM_021200 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 114.5-87 chr5 166990398 166990494 + 1.25 NA Intergenic Intergenic -64076 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 345 chr10 57263575 57263999 + 1.25 NA Intergenic L2a|LINE|L2 40772 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 176.25-35 chr2 189692191 189692535 + 1.25 NA exon (NM_144708, exon 4 of 23) exon (NM_144708, exon 4 of 23) 16378 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 224.25-27 chr6 37733617 37733861 + 1.25 NA Intergenic AluJb|SINE|Alu -35856 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 181-44 chr7 8703790 8703984 + 1.25 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 270278 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 119.5-52 chr18 6548169 6548321 + 1.25 NA intron (NR_120518, intron 2 of 5) L1MC5|LINE|L1 36829 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 184-40 chr4 113847136 113847381 + 1.25 NA Intergenic Intergenic -85331 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 286.75-12 chr8 90071699 90072287 + 1.25 NA intron (NM_001366795, intron 2 of 9) L2a|LINE|L2 10886 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 139.25-56 chr3 7089822 7089933 + 1.25 NA intron (NM_000844, intron 1 of 9) AluSx|SINE|Alu -195860 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 136-50 chr3 165536017 165536173 + 1.25 NA Intergenic MIR|SINE|MIR 301328 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 134.75-13 chr10 109961527 109961641 + 1.25 NA intron (NR_038943, intron 2 of 4) intron (NR_038943, intron 2 of 4) -34789 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 330.5-5 chr2 16573450 16573759 + 1.25 NA intron (NM_030797, intron 3 of 11) THE1B|LTR|ERVL-MaLR 92230 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 284.5-15 chr2 45143487 45143784 + 1.25 NA Intergenic Intergenic 111306 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 171.25-12 chr13 101499426 101499686 + 1.25 NA intron (NM_001271756, intron 1 of 9) intron (NM_001271756, intron 1 of 9) 9604 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 145.25-88 chr9 96108396 96108574 + 1.25 NA non-coding (NR_132344, exon 3 of 3) non-coding (NR_132344, exon 3 of 3) 7926 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 133.75-70 chr6 165104189 165104449 + 1.25 NA Intergenic L2a|LINE|L2 205286 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 143.75-61 chr3 56253822 56254048 + 1.25 NA intron (NR_132749, intron 3 of 17) intron (NR_132749, intron 3 of 17) 214532 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 288-18 chr7 4466574 4466905 + 1.25 NA Intergenic Intergenic -215556 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 254.5-8 chr12 30053039 30053473 + 1.25 NA Intergenic Intergenic -268497 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 242.5-12 chr17 63195261 63195490 + 1.25 NA intron (NM_025185, intron 5 of 25) L2a|LINE|L2 229140 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 158.5-2 chr1 45989431 45989665 + 1.25 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 125200 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 209-24 chr4 97874900 97875161 + 1.25 NA intron (NM_174952, intron 8 of 10) L1ME1|LINE|L1 268446 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 274.5-5 chr12 8471169 8471508 + 1.25 NA intron (NM_001007033, intron 4 of 5) L1MB2|LINE|L1 15376 NM_001007033 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 153.25-61 chr9 124571168 124571405 + 1.25 NA intron (NM_033334, intron 2 of 9) L2c|LINE|L2 -63887 NM_004959 2516 Hs.495108 NM_004959 ENSG00000136931 NR5A1 AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 nuclear receptor subfamily 5 group A member 1 protein-coding 148.75-54 chr5 61086501 61086652 + 1.25 NA intron (NM_174889, intron 2 of 3) L1ME1|LINE|L1 -75740 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 291.75-15 chr3 185618217 185618586 + 1.25 NA intron (NM_021627, intron 12 of 16) intron (NM_021627, intron 12 of 16) 32106 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 141.75-26 chr15 56221143 56221323 + 1.25 NA intron (NM_001370561, intron 4 of 11) L1PA15|LINE|L1 22646 NM_022841 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 126.25-7 chr1 211793297 211793413 + 1.25 NA intron (NM_014873, intron 2 of 7) intron (NM_014873, intron 2 of 7) -36282 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 134.25-37 chr2 69118695 69118829 + 1.25 NA intron (NM_032208, intron 10 of 17) intron (NM_032208, intron 10 of 17) 15080 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 197.25-37 chr2 121141833 121142004 + 1.25 NA Intergenic L1ME1|LINE|L1 143284 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 201-3 chr1 239381370 239381608 + 1.25 NA Intergenic L1ME3|LINE|L1 -5079 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 131.5-91 chr8 80878293 80878425 + 1.25 NA Intergenic Intergenic -3578 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 134.75-29 chr18 56949740 56949879 + 1.25 NA intron (NM_015285, intron 25 of 27) Charlie1a|DNA|hAT-Charlie 122310 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 151.75-14 chr11 73770183 73770343 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR -9189 NM_002869 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 297.25-4 chr1 215471964 215472355 + 1.25 NA Intergenic Intergenic -95145 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 175.25-37 chr3 40052331 40052577 + 1.25 NA intron (NM_001284425, intron 3 of 15) intron (NM_001284425, intron 3 of 15) -47557 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 211.25-44 chrX 99030848 99031139 + 1.25 NA Intergenic Intergenic 1379280 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 163.25-75 chr9 31945735 31945930 + 1.25 NA Intergenic Tigger6b|DNA|TcMar-Tigger -438771 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 208.5-46 chr20 59875192 59875431 + 1.25 NA exon (NM_014258, exon 34 of 45) exon (NM_014258, exon 34 of 45) 58326 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 143.75-27 chr12 87721992 87722139 + 1.25 NA Intergenic Intergenic -46747 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 153-18 chr2 76089928 76090111 + 1.25 NA Intergenic L1MC3|LINE|L1 -379104 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 236-12 chr14 68211519 68211882 + 1.25 NA intron (NM_133509, intron 7 of 10) MamRep605|LTR?|LTR? 388108 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 150.5-49 chr2 138983874 138984037 + 1.25 NA Intergenic Intergenic 86631 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 224-32 chr9 32900176 32900455 + 1.25 NA Intergenic Intergenic 101261 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 207.5-21 chr16 83386715 83386980 + 1.25 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -121499 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 230.5-29 chr2 213028289 213028544 + 1.25 NA intron (NM_001371277, intron 5 of 6) L1M5|LINE|L1 -102080 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 119.25-42 chr19 48012490 48012643 + 1.25 NA intron (NM_022142, intron 2 of 6) MER103C|DNA|hAT-Charlie 17934 NM_022142 64100 Hs.104894 NM_022142 ENSG00000169393 ELSPBP1 E12|EDDM12|EL149|HE12 epididymal sperm binding protein 1 protein-coding 186.75-42 chr4 98268362 98268557 + 1.25 NA intron (NM_001100427, intron 1 of 14) L1M3|LINE|L1 7075 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 221.25-33 chr7 47772499 47773015 + 1.25 NA Intergenic MIR|SINE|MIR 11281 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 123.5-19 chr11 50674392 50674549 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 265323 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 120.75-53 chr2 177530214 177530340 + 1.25 NA intron (NM_003659, intron 19 of 19) intron (NM_003659, intron 19 of 19) 22519 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 168.75-55 chr7 34115681 34115871 + 1.25 NA intron (NM_133468, intron 14 of 15) L1MB8|LINE|L1 210237 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 138.25-81 chr7 65400089 65400287 + 1.25 NA 3' UTR (NM_001287533, exon 5 of 5) 3' UTR (NM_001287533, exon 5 of 5) 26333 NM_001287533 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 173.25-12 chr12 129964329 129964516 + 1.25 NA Intergenic Intergenic -60397 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 250.5-30 chr7 137991451 137991672 + 1.25 NA intron (NM_001253775, intron 1 of 3) intron (NM_001253775, intron 1 of 3) 10525 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 162.25-15 chr16 30603421 30603597 + 1.25 NA non-coding (NR_104166, exon 3 of 3) non-coding (NR_104166, exon 3 of 3) 6319 NR_104166 115509 Hs.454685 NM_138447 ENSG00000156853 ZNF689 TIPUH1 zinc finger protein 689 protein-coding 234.75-6 chr11 42989120 42989526 + 1.25 NA Intergenic Intergenic 280046 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 180.25-53 chr5 53905613 53906053 + 1.25 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 45766 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 211.5-58 chr9 91134490 91134735 + 1.25 NA intron (NR_135306, intron 2 of 2) intron (NR_135306, intron 2 of 2) 15550 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 174.5-86 chr9 37705357 37705572 + 1.25 NA intron (NM_001371225, intron 2 of 15) AluSz6|SINE|Alu 37455 NM_001371223 128.5-2 chr1 151453700 151453842 + 1.25 NA intron (NM_001194938, intron 1 of 17) intron (NM_001194938, intron 1 of 17) 5723 NM_145796 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 153.75-62 chr5 23859331 23859679 + 1.25 NA Intergenic Intergenic -91843 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 269.5-31 chr8 122216937 122217263 + 1.25 NA Intergenic L1PA15-16|LINE|L1 351544 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 246-3 chr1 172120425 172120682 + 1.25 NA intron (NR_146559, intron 14 of 20) L2a|LINE|L2 -18255 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 223.75-14 chr22 40913539 40913754 + 1.25 NA intron (NM_022098, intron 6 of 9) intron (NM_022098, intron 6 of 9) -37732 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 195.5-69 chr4 115678711 115678882 + 1.25 NA Intergenic LTR12C|LTR|ERV1 -565176 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 130.75-36 chr2 20976045 20976206 + 1.25 NA Intergenic Intergenic 67948 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 188-20 chr2 45882210 45882418 + 1.25 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 230639 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 234-23 chr2 32956848 32957177 + 1.25 NA intron (NM_206943, intron 2 of 33) Tigger1|DNA|TcMar-Tigger 10059 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 151-66 chr7 27783794 27783978 + 1.25 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 43791 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 120.25-22 chr13 25473535 25473651 + 1.25 NA intron (NM_016529, intron 2 of 36) L1MB8|LINE|L1 4819 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 216.75-32 chr4 84003890 84004147 + 1.25 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 295151 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 147-11 chr10 70045563 70045742 + 1.25 NA Intergenic L1MA9|LINE|L1 -7194 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 170.5-47 chr21 28920344 28920657 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie -35127 NM_182749 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 137.75-55 chr3 98723068 98723258 + 1.25 NA intron (NR_046683, intron 1 of 4) intron (NR_046683, intron 1 of 4) -9073 NM_001323353 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 308.25-2 chr1 172171246 172171564 + 1.25 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -26570 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 181.25 chr1 11480307 11480485 + 1.25 NA intron (NM_020780, intron 1 of 20) CpG 1241 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 197.75-49 chr8 81080121 81080469 + 1.25 NA intron (NM_018440, intron 1 of 8) Tigger20a|DNA|TcMar-Tigger 31773 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 231.5-48 chr8 89883667 89883940 + 1.25 NA Intergenic Intergenic -18065 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 396.5 chr11 24393383 24394013 + 1.25 NA Intergenic MER45B|DNA|hAT-Tip100 -103355 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 133.5-9 chr10 6185977 6186234 + 1.25 NA intron (NM_001282630, intron 1 of 14) intron (NM_001282630, intron 1 of 14) -16827 NM_004566 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 205.75-19 chr18 42181448 42181758 + 1.25 NA Intergenic Intergenic -5065 NR_046457 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 128-25 chr2 12055050 12055166 + 1.25 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 47992 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 199-5 chr1 241480004 241480205 + 1.25 NA Intergenic L1MEc|LINE|L1 39681 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 215.25-28 chr5 65429672 65429847 + 1.25 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 52161 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 175.25-12 chr11 24469421 24469660 + 1.25 NA Intergenic L1MA9|LINE|L1 -27513 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 157.5-36 chr17 41853114 41853336 + 1.25 NA 3' UTR (NM_018143, exon 2 of 2) 3' UTR (NM_018143, exon 2 of 2) 12198 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 155.75-15 chr14 27589419 27589730 + 1.25 NA intron (NR_148991, intron 2 of 2) L1MEc|LINE|L1 -23014 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 272.5-8 chr22 26369680 26369979 + 1.25 NA intron (NM_001184775, intron 13 of 15) AluSz6|SINE|Alu -59431 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 258.25-17 chr4 35375877 35376125 + 1.25 NA Intergenic Intergenic 867938 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 235-33 chr5 35528415 35528665 + 1.25 NA Intergenic L1ME3B|LINE|L1 -89323 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 213.75-3 chr1 68524080 68524282 + 1.25 NA intron (NR_110671, intron 1 of 2) intron (NR_110671, intron 1 of 2) -27099 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 306.25-11 chr7 21431473 21431814 + 1.25 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) 3560 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 231.25-11 chr14 22218932 22219267 + 1.25 NA Intergenic Intergenic 213654 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 219.75-19 chr2 139490321 139490529 + 1.25 NA Intergenic MIRc|SINE|MIR 593101 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 167-5 chr10 73575965 73576147 + 1.25 NA promoter-TSS (NM_152586) promoter-TSS (NM_152586) -381 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 132-58 chr4 160475300 160475489 + 1.25 NA Intergenic MLT2C1|LTR|ERVL -697610 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 205.75-3 chr1 117068565 117068876 + 1.25 NA intron (NM_003594, intron 3 of 22) intron (NM_003594, intron 3 of 22) 8394 NM_003594 8458 Hs.32333 NM_003594 ENSG00000116830 TTF2 HuF2|ZGRF6 transcription termination factor 2 protein-coding 220-27 chr5 40241433 40241826 + 1.25 NA Intergenic Intergenic 189338 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 204.5-45 chr4 107031603 107031881 + 1.25 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 4571 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 123.25-22 chr13 75600422 75600578 + 1.25 NA intron (NM_006002, intron 7 of 8) Tigger1|DNA|TcMar-Tigger -19934 NM_005358 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 204.75-39 chr6 45828025 45828279 + 1.25 NA Intergenic MIR3|SINE|MIR 109445 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 131-37 chr3 70717140 70717294 + 1.25 NA Intergenic Intergenic 347707 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 180.75-35 chr2 129102160 129102355 + 1.25 NA Intergenic MER5B|DNA|hAT-Charlie 171634 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 179.75-12 chr13 37668607 37668844 + 1.25 NA intron (NM_003306, intron 5 of 10) intron (NM_003306, intron 5 of 10) -69881 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 160.75-33 chr2 191165610 191165776 + 1.25 NA Intergenic Intergenic -14097 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 202.5-15 chr18 8932991 8933196 + 1.25 NA Intergenic LTR8B|LTR|ERV1 -169606 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 180-57 chr5 111605971 111606165 + 1.25 NA intron (NR_040093, intron 1 of 6) L1MB8|LINE|L1 -93471 NR_131754 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 175.5-10 chr10 48207124 48207413 + 1.25 NA intron (NM_001018071, intron 13 of 28) intron (NM_001018071, intron 13 of 28) -32125 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 173.5-77 chr4 110941400 110941649 + 1.25 NA Intergenic MIRc|SINE|MIR -80877 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 185.5-12 chr10 117148493 117148755 + 1.25 NA Intergenic Intergenic -10354 NM_199131 11023 Hs.441536 NM_199131 ENSG00000148704 VAX1 MCOPS11 ventral anterior homeobox 1 protein-coding 180.75-38 chr20 31054874 31055167 + 1.25 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202644 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 125.5-21 chr10 110749178 110749366 + 1.25 NA intron (NM_001134363, intron 1 of 13) L1M5|LINE|L1 104936 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 158.25-13 chr12 23294815 23295019 + 1.25 NA Intergenic Intergenic 119281 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 177.75-50 chr6 55665199 55665429 + 1.25 NA Intergenic Intergenic -86100 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 253.75-12 chr4 85408128 85408469 + 1.25 NA Intergenic Intergenic -66852 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 253.75-2 chr10 51065945 51066283 + 1.25 NA intron (NR_120678, intron 1 of 1) intron (NR_120678, intron 1 of 1) 2438 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 265.25-8 chr12 2671587 2672021 + 1.25 NA intron (NM_199460, intron 40 of 49).2 intron (NM_199460, intron 40 of 49).2 416 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 286.25-16 chr6 44713411 44713693 + 1.25 NA Intergenic Intergenic -161671 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 227.75-2 chr10 61416309 61416529 + 1.25 NA intron (NR_134508, intron 4 of 6) MIR|SINE|MIR -36220 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 190-50 chr7 115999341 115999540 + 1.25 NA intron (NM_012252, intron 1 of 7) L1M1|LINE|L1 -31127 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 183-39 chr20 33878609 33878776 + 1.25 NA Intergenic Intergenic 67344 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 249-33 chr4 167903404 167903686 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -188992 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 215.75-14 chr21 19058887 19059137 + 1.25 NA Intergenic Intergenic -299200 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 196-13 chr12 101935664 101935979 + 1.25 NA Intergenic MIRc|SINE|MIR 58241 NM_018370 55332 Hs.525634 NM_018370 ENSG00000136048 DRAM1 DRAM DNA damage regulated autophagy modulator 1 protein-coding 187.25-42 chr3 186181750 186181948 + 1.25 NA intron (NM_001346, intron 22 of 24) intron (NM_001346, intron 22 of 24) -72760 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 210.25-44 chr7 38717192 38717533 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -30273 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 132.75-84 chr6 22992428 22992534 + 1.25 NA Intergenic L1PA7|LINE|L1 -274557 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 248.75-3 chr12 84600166 84600597 + 1.25 NA Intergenic Intergenic 312418 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 210.75-16 chr2 18209932 18210378 + 1.25 NA Intergenic Intergenic 331488 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 179-60 chr8 142377210 142377532 + 1.25 NA intron (NM_001366903, intron 1 of 9) L1ME2|LINE|L1 25811 NM_001366902 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 159.25-26 chr17 63327309 63327459 + 1.25 NA intron (NM_025185, intron 10 of 25) L1MA7|LINE|L1 112883 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 232-8 chr15 59199616 59199872 + 1.25 NA intron (NM_004998, intron 16 of 27) Tigger14a|DNA|TcMar-Tigger -7099 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 193.25-48 chr8 132605276 132605478 + 1.25 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -43898 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 136.75-96 chr7 79407833 79408025 + 1.25 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -45028 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 249.5-23 chr5 5971687 5971974 + 1.25 NA Intergenic MLT2B4|LTR|ERVL 365462 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 177.5-34 chr2 102319371 102319699 + 1.25 NA intron (NM_001282408, intron 1 of 6) intron (NM_001282408, intron 1 of 6) 7972 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 129.5-89 chr8 119203275 119203422 + 1.25 NA Intergenic L1MEc|LINE|L1 -5015 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 180.75-17 chr11 133694844 133695050 + 1.25 NA Intergenic Intergenic 115429 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 119-73 chr8 80422729 80422933 + 1.25 NA Intergenic Intergenic -62762 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 211.25-23 chr20 44696436 44696669 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR -18292 NM_001323370 8839 Hs.592145 NM_003881 ENSG00000064205 CCN5 CT58|CTGF-L|WISP2 cellular communication network factor 5 protein-coding 425.75-2 chr22 24708763 24709349 + 1.25 NA Intergenic L1MB1|LINE|L1 -49909 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 170.25-54 chr5 102806103 102806314 + 1.25 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) -1990 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 318.5-11 chr2 50482242 50482512 + 1.25 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -134621 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 123.5-42 chr17 50983908 50984079 + 1.25 NA intron (NM_001130527, intron 24 of 29) L3|LINE|CR1 62885 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 176.25-6 chr1 217598207 217598411 + 1.25 NA intron (NM_018040, intron 5 of 9) AluSz6|SINE|Alu 32781 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 222.25-29 chr8 49436967 49437180 + 1.25 NA Intergenic Intergenic 75107 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 117.5-84 chr6 84901309 84901483 + 1.25 NA Intergenic L1ME1|LINE|L1 -136798 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 218.25-19 chr14 74010785 74011065 + 1.25 NA intron (NM_001321987, intron 3 of 17) intron (NM_001321987, intron 3 of 17) 8363 NM_001321987 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 215-48 chr9 113055069 113055249 + 1.25 NA intron (NM_001282515, intron 1 of 3) L2a|LINE|L2 1565 NM_001282518 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 159.5-42 chr2 69834359 69834579 + 1.25 NA intron (NM_178439, intron 1 of 13) HAL1|LINE|L1 4809 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 193-13 chr11 35486435 35486728 + 1.25 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 39035 NM_001001991 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 194-20 chr2 83315938 83316197 + 1.25 NA Intergenic MIR|SINE|MIR -206747 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 271-16 chr22 33223190 33223499 + 1.25 NA Intergenic Intergenic 114815 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 168.5-18 chr13 28351862 28352071 + 1.25 NA intron (NM_002019, intron 15 of 29) MIR|SINE|MIR 143162 NM_001160031 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 161.75-56 chr7 85497161 85497387 + 1.25 NA Intergenic Intergenic 76152 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 225.75-20 chr4 25303607 25303933 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -9004 NM_024936 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 188.5-40 chr4 168536412 168536588 + 1.25 NA intron (NM_001166108, intron 2 of 21) THE1D|LTR|ERVL-MaLR 39448 NM_001166108 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 288.5-14 chr3 170250747 170251008 + 1.25 NA intron (NM_002740, intron 2 of 17) L1MB7|LINE|L1 28453 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 256-23 chr5 89948683 89948956 + 1.25 NA Intergenic MIR3|SINE|MIR 67901 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 128.5-10 chr11 12429441 12429571 + 1.25 NA intron (NM_018222, intron 1 of 12) MER63D|DNA|hAT-Blackjack 51935 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 189.5-32 chr2 169639583 169639910 + 1.25 NA 3' UTR (NM_004792, exon 14 of 14) 3' UTR (NM_004792, exon 14 of 14) 54659 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 235.5-41 chr4 128291584 128291905 + 1.25 NA Intergenic MLT1H1|LTR|ERVL-MaLR -3931 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 199.5-4 chr10 61396265 61396470 + 1.25 NA Intergenic Intergenic -56272 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 186.75-57 chr7 509567 509844 + 1.25 NA intron (NM_002607, intron 4 of 6) MLT1A0|LTR|ERVL-MaLR 10139 NM_033023 5154 Hs.535898 NM_002607 ENSG00000197461 PDGFA PDGF-A|PDGF1 platelet derived growth factor subunit A protein-coding 250-30 chr8 99508517 99508895 + 1.25 NA intron (NM_017890, intron 28 of 61) intron (NM_017890, intron 28 of 61) 28024 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 276.5-6 chr2 172623902 172624200 + 1.25 NA non-coding (NR_103731, exon 13 of 14) non-coding (NR_103731, exon 13 of 14) 67961 NM_001278549 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 156.25-24 chr16 61961335 61961487 + 1.25 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 75027 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 278.25-16 chr3 184927981 184928398 + 1.25 NA intron (NM_001009921, intron 30 of 46) intron (NM_001009921, intron 30 of 46) 115682 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 255-17 chr21 14620290 14620644 + 1.25 NA intron (NM_001256579, intron 1 of 6) THE1D|LTR|ERVL-MaLR 22640 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 122-71 chr7 115191412 115191584 + 1.25 NA intron (NR_126407, intron 1 of 4) Eulor6B|DNA?|DNA? 39857 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 209-41 chr9 13389688 13389997 + 1.25 NA Intergenic L1PA14|LINE|L1 41487 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 283.25-6 chr12 58795812 58796115 + 1.25 NA intron (NR_126341, intron 1 of 1) L2|LINE|L2 -14247 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 219.5-44 chr6 53099285 53099716 + 1.25 NA 3' UTR (NM_012347, exon 12 of 12) 3' UTR (NM_012347, exon 12 of 12) 28527 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 122.75-25 chr14 67443155 67443369 + 1.25 NA Intergenic MamRep564|Unknown|Unknown -1332 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 207-6 chr10 63448956 63449251 + 1.25 NA intron (NM_001322258, intron 1 of 24) AluSx|SINE|Alu -16126 NR_027182 84989 Hs.659950 NM_032903 ENSG00000272767 JMJD1C-AS1 - JMJD1C antisense RNA 1 ncRNA 137.25-4 chr1 102527175 102527325 + 1.25 NA Intergenic L2a|LINE|L2 -530016 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 116.25-32 chr17 6973632 6973812 + 1.25 NA Intergenic Intergenic -22327 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 143.5-109 chrX 87634101 87634258 + 1.25 NA intron (NM_057162, intron 8 of 10) MER5A1|DNA|hAT-Charlie 116377 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 194.75-42 chr7 50192338 50192678 + 1.25 NA Intergenic MamGypLTR3a|LTR|Gypsy 96422 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 252.75-2 chr10 76962034 76962400 + 1.25 NA intron (NM_001271519, intron 20 of 28) intron (NM_001271519, intron 20 of 28) 74173 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 234.5-6 chr10 118296071 118296440 + 1.25 NA Intergenic Intergenic 46069 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 129.75-24 chr14 26894214 26894359 + 1.25 NA intron (NR_110041, intron 3 of 3) intron (NR_110041, intron 3 of 3) -14356 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 164-67 chr8 89395785 89395936 + 1.25 NA Intergenic Intergenic 361851 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 228.5-22 chr2 201013945 201014287 + 1.25 NA intron (NM_001321619, intron 5 of 11) intron (NM_001321619, intron 5 of 11) -50456 NR_033915 4999 Hs.444870 NM_006190 ENSG00000115942 ORC2 ORC2L origin recognition complex subunit 2 protein-coding 218-24 chr2 149771915 149772160 + 1.25 NA intron (NR_145421, intron 3 of 4) L1ME3|LINE|L1 87154 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 182.25-44 chr5 51611611 51611792 + 1.25 NA Intergenic Intergenic 228253 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 178.25-47 chr4 133627235 133627462 + 1.25 NA Intergenic Intergenic 478054 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 138-25 chr16 54616015 54616140 + 1.25 NA Intergenic L1ME3|LINE|L1 232156 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 208-31 chr4 178258273 178258512 + 1.25 NA Intergenic Intergenic -350456 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 156.75-27 chr14 24404409 24404538 + 1.25 NA intron (NM_025081, intron 2 of 8) HAL1|LINE|L1 5470 NM_025081 57523 Hs.288348 NM_025081 ENSG00000205978 NYNRIN CGIN1|KIAA1305 NYN domain and retroviral integrase containing protein-coding 161.5-42 chr18 23988904 23989189 + 1.25 NA Intergenic AluJr|SINE|Alu -3841 NM_153211 125488 Hs.128576 NM_153211 ENSG00000168234 TTC39C C18orf17|HsT2697 tetratricopeptide repeat domain 39C protein-coding 219.5-34 chr4 35579666 35579853 + 1.25 NA Intergenic L1MEf|LINE|L1 664180 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 242.75-15 chr6 49798234 49798570 + 1.25 NA Intergenic Intergenic -11117 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 220-4 chr1 113196335 113196650 + 1.25 NA TTS (NR_038846) TTS (NR_038846) 9761 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 257.5-29 chr8 77300791 77301069 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie -149767 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 313.75-6 chr22 39961718 39962186 + 1.25 NA intron (NM_001291828, intron 2 of 4) MamRep434|DNA|TcMar-Tigger 15135 NM_001291825 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 192-49 chr7 31036926 31037140 + 1.25 NA Intergenic Intergenic -15275 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 162-27 chr20 62670669 62670961 + 1.25 NA intron (NM_016354, intron 11 of 11) intron (NM_016354, intron 11 of 11) -4194 NR_024470 100127888 Hs.671273 NR_024470 ENSG00000232803 SLCO4A1-AS1 - SLCO4A1 antisense RNA 1 ncRNA 180.75-26 chr14 68527782 68528175 + 1.25 NA intron (NM_001321818, intron 10 of 10) HAL1b|LINE|L1 100809 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 195-43 chr4 81959179 81959433 + 1.25 NA Intergenic Charlie4a|DNA|hAT-Charlie 414685 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 128-56 chr5 152957192 152957354 + 1.25 NA intron (NR_109877, intron 2 of 4) MIR3|SINE|MIR 15076 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 143.5-38 chr15 98167107 98167416 + 1.25 NA Intergenic Intergenic -78508 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 189-15 chr12 26641264 26641526 + 1.25 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 191799 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 198.5-48 chr6 147596374 147596570 + 1.25 NA Intergenic Intergenic 87782 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 327-11 chr5 25591189 25591650 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie 400466 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 120-37 chr16 71278042 71278173 + 1.25 NA Intergenic Charlie1a|DNA|hAT-Charlie 11295 NM_001099642 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 172.25-60 chr5 7095425 7095649 + 1.25 NA Intergenic Intergenic 173817 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 177.5-9 chr10 62011917 62012145 + 1.25 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -37326 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 262.75-19 chr8 134750420 134750802 + 1.25 NA Intergenic L1MA8|LINE|L1 -37580 NR_110323 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 175.5-78 chr7 145511970 145512235 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL -676049 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 200-15 chr15 56186780 56186970 + 1.25 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 3057 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 137.25-11 chr10 85742541 85742770 + 1.25 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 164924 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 193.5-26 chr19 35378047 35378348 + 1.25 NA Intergenic AluJb|SINE|Alu 7102 NM_001348195 2866 NM_005305 ENSG00000126251 GPR42 FFAR1L|FFAR3L|GPR41L|GPR42P G protein-coupled receptor 42 (gene/pseudogene) protein-coding 133-31 chr18 7822050 7822216 + 1.25 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 254817 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 193.25-41 chr7 9174278 9174474 + 1.25 NA Intergenic L1M1|LINE|L1 -459894 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 164.25-27 chr19 50071482 50071708 + 1.25 NA intron (NR_138096, intron 3 of 4) MER68|LTR|ERVL 21006 NR_138096 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 193.5-18 chr12 65124629 65124812 + 1.25 NA Intergenic L2c|LINE|L2 -3415 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 266.5 chr1 50492497 50492836 + 1.25 NA intron (NM_007051, intron 15 of 18) MADE2|DNA|TcMar-Mariner -69223 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 132.5-13 chr11 9836790 9837019 + 1.25 NA intron (NM_030962, intron 26 of 39) L1ME3A|LINE|L1 -2238 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 220.75-29 chr7 38837621 38837897 + 1.25 NA intron (NM_014396, intron 4 of 28) intron (NM_014396, intron 4 of 28) 71432 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 255.75-10 chr17 16347292 16347591 + 1.25 NA intron (NM_181716, intron 3 of 4) intron (NM_181716, intron 3 of 4) 6028 NM_181716 201161 Hs.433422 NM_181716 ENSG00000166582 CENPV 3110013H01Rik|CENP-V|PRR6|p30 centromere protein V protein-coding 213-20 chr15 86192251 86192601 + 1.25 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) -75709 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 186.25-61 chrX 118467764 118467960 + 1.25 NA Intergenic MLT1N2|LTR|ERVL-MaLR -28047 NM_144658 139818 Hs.368203 NM_144658 ENSG00000147251 DOCK11 ACG|ZIZ2|bB128O4.1 dedicator of cytokinesis 11 protein-coding 127.75-66 chr4 85115100 85115291 + 1.25 NA Intergenic Intergenic 147711 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 260.5 chr10 13276934 13277157 + 1.25 NA TTS (NM_001323084) TTS (NM_001323084) 22701 NM_001323084 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 178.75-16 chr16 9324971 9325165 + 1.25 NA Intergenic Intergenic -30520 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 147-55 chr3 103475898 103476130 + 1.25 NA Intergenic LTR16C|LTR|ERVL 48102 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 148.5-113 chr9 77601077 77601276 + 1.25 NA intron (NM_004297, intron 1 of 6) MER61C|LTR|ERV1 47146 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 366.5-9 chr3 195148079 195148414 + 1.25 NA intron (NR_102711, intron 1 of 1) intron (NR_102711, intron 1 of 1) 375 NR_102710 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 166.75-5 chr10 14771252 14771394 + 1.25 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 3574 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 186.25-57 chr9 74857514 74857738 + 1.25 NA intron (NM_017662, intron 2 of 38) intron (NM_017662, intron 2 of 38) 29721 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 118.25-93 chr6 125496134 125496292 + 1.25 NA Intergenic L1MC4|LINE|L1 -178140 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 138.75-51 chr4 38685648 38685845 + 1.25 NA intron (NM_016531, intron 2 of 5) intron (NM_016531, intron 2 of 5) -21118 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 215.5-42 chr6 60701179 60701451 + 1.25 NA Intergenic Intergenic -872815 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 165.25-41 chr3 180810276 180810446 + 1.25 NA intron (NR_109986, intron 3 of 13) L1MD|LINE|L1 59817 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 285.25-16 chr3 36823231 36823487 + 1.25 NA promoter-TSS (NR_147141) promoter-TSS (NR_147141) -859 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 239-30 chr7 3327504 3327867 + 1.25 NA intron (NM_152744, intron 1 of 44) MER46C|DNA|TcMar-Tigger 26433 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 217.25-19 chr20 32356511 32356811 + 1.25 NA Intergenic Intergenic -1683 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 203.5-40 chr5 19183293 19183496 + 1.25 NA Intergenic Intergenic 702878 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 183.5-18 chr12 13664378 13664617 + 1.25 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -287752 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 299.75-6 chr5 113305057 113305597 + 1.25 NA intron (NM_001085377, intron 3 of 18) L2|LINE|L2 -10389 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 197.25-5 chr1 212544640 212544918 + 1.25 NA promoter-TSS (NR_125985) promoter-TSS (NR_125985) -915 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 254.75-15 chr2 211331797 211332157 + 1.25 NA Intergenic MER67D|LTR|ERV1 714406 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 180.25-13 chr12 78359155 78359418 + 1.25 NA non-coding (NR_135021, exon 1 of 2) non-coding (NR_135021, exon 1 of 2) 460 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 122-17 chr12 98058647 98058783 + 1.25 NA Intergenic Intergenic -63267 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 131.25-45 chr2 105887814 105888040 + 1.25 NA intron (NM_001004720, intron 3 of 3) intron (NM_001004720, intron 3 of 3) 36080 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 131.25-20 chr10 106584828 106585080 + 1.25 NA intron (NM_001206569, intron 24 of 25) intron (NM_001206569, intron 24 of 25) 444789 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 188.25-35 chr3 48326946 48327192 + 1.25 NA intron (NM_001080525, intron 1 of 4) intron (NM_001080525, intron 1 of 4) 1272 NM_001080525 646424 Hs.257687 NM_001080525 ENSG00000229453 SPINK8 - serine peptidase inhibitor, Kazal type 8 (putative) protein-coding 199.75-13 chr17 71196550 71196928 + 1.25 NA intron (NR_104152, intron 1 of 3) L1PREC2|LINE|L1 5440 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 162.5-29 chr16 6784706 6784915 + 1.25 NA intron (NM_001142334, intron 1 of 13) L1MA4|LINE|L1 11001 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 224.5-39 chr7 131887314 131887591 + 1.25 NA Intergenic Intergenic -22768 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 180.25-57 chr6 47114395 47114715 + 1.25 NA Intergenic AluJb|SINE|Alu -72223 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 249.5-3 chr10 89603659 89603897 + 1.25 NA intron (NM_148977, intron 2 of 6) MER5A|DNA|hAT-Charlie -10951 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 118.75-15 chr11 59304805 59304918 + 1.25 NA Intergenic L1M2|LINE|L1 -59598 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 148.5-43 chr19 33285620 33285934 + 1.25 NA Intergenic Intergenic 16757 NM_001287424 1050 Hs.76171 NM_004364 ENSG00000245848 CEBPA C/EBP-alpha|CEBP CCAAT enhancer binding protein alpha protein-coding 252-26 chr6 109052393 109052622 + 1.25 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -42115 NM_001350665 285753 Hs.632616 NM_173830 ENSG00000183137 CEP57L1 C6orf182|bA487F23.2|cep57R centrosomal protein 57 like 1 protein-coding 133.75-35 chr18 7048674 7048790 + 1.25 NA intron (NM_005559, intron 5 of 62) L1ME2|LINE|L1 69065 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 213.5-23 chr18 32684944 32685250 + 1.25 NA intron (NM_020805, intron 5 of 8) intron (NM_020805, intron 5 of 8) 87926 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 188.75-21 chr2 139588643 139588904 + 1.25 NA Intergenic Intergenic 691449 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 303.5-14 chr4 146989065 146989314 + 1.25 NA Intergenic L1PA13|LINE|L1 -43303 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 143-14 chr12 4985375 4985598 + 1.25 NA Intergenic Intergenic -58393 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 163.5-16 chr11 89487155 89487352 + 1.25 NA intron (NM_001291929, intron 1 of 16) MIRb|SINE|MIR 3507 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 281.75-6 chr16 67713922 67714221 + 1.25 NA intron (NM_001243650, intron 1 of 1) MER21B|LTR|ERVL 5245 NM_001243650 81577 Hs.307084 NM_030819 ENSG00000141098 GFOD2 - glucose-fructose oxidoreductase domain containing 2 protein-coding 188.5-50 chr6 134395441 134395677 + 1.25 NA Intergenic Intergenic -42157 NR_038217 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 236-36 chr8 27759261 27759605 + 1.25 NA intron (NR_156432, intron 3 of 7) AluSx1|SINE|Alu 13207 NM_001304532 55246 Hs.445512 NM_018246 ENSG00000147419 CCDC25 - coiled-coil domain containing 25 protein-coding 254.75-5 chr10 105537541 105537941 + 1.25 NA Intergenic Intergenic 282592 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 372.5-3 chr18 5758460 5759016 + 1.25 NA intron (NR_038839, intron 1 of 4) intron (NR_038839, intron 1 of 4) 9919 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 277.75-18 chr8 131527743 131528216 + 1.25 NA Intergenic L1MA7|LINE|L1 -376114 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 202-2 chr10 42766722 42766927 + 1.25 NA intron (NR_134498, intron 1 of 1) L1MC2|LINE|L1 -11621 NR_136644 283028 Hs.448616 NR_136644 LOC283028 - uncharacterized LOC283028 ncRNA 197.75-4 chr1 213718155 213718359 + 1.25 NA Intergenic Intergenic -206492 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 211-8 chr10 128446766 128447102 + 1.25 NA Intergenic AluSx1|SINE|Alu 160984 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 182-36 chr4 16729986 16730173 + 1.25 NA intron (NM_001304435, intron 2 of 7) (TCTAT)n|Simple_repeat|Simple_repeat 168566 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 150.25-31 chr15 86906857 86907044 + 1.25 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -25930 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 278-32 chr8 134102460 134102715 + 1.25 NA Intergenic L1ME1|LINE|L1 216091 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 364.25-4 chr3 49296724 49297148 + 1.25 NA intron (NM_199443, intron 12 of 20) intron (NM_199443, intron 12 of 20) -19704 NM_198562 375341 Hs.403828 NM_198562 ENSG00000188315 C3orf62 - chromosome 3 open reading frame 62 protein-coding 184-27 chr2 206642881 206643291 + 1.25 NA Intergenic Intergenic -1141 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 196-30 chr5 8475791 8476076 + 1.25 NA Intergenic Intergenic 15008 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 248.5-3 chr1 233331416 233331761 + 1.25 NA intron (NM_032435, intron 1 of 9) intron (NM_032435, intron 1 of 9) 3864 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 120.75-59 chr21 29839889 29840025 + 1.25 NA intron (NM_000830, intron 1 of 16) L3|LINE|CR1 91782 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 218-7 chr11 79952690 79952976 + 1.25 NA Intergenic Intergenic -511803 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 193.25-24 chr3 3288790 3288965 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -109160 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 158.5-81 chr4 93743657 93743824 + 1.25 NA intron (NM_001286838, intron 13 of 14) MSTB1|LTR|ERVL-MaLR -85013 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 189.25-6 chr11 79231104 79231275 + 1.25 NA intron (NM_001098816, intron 2 of 33) L1ME4c|LINE|L1 170920 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 128.75-8 chr10 79335965 79336200 + 1.25 NA Intergenic (CCTC)n|Simple_repeat|Simple_repeat -11387 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 165-37 chr22 29969228 29969427 + 1.25 NA intron (NM_153051, intron 2 of 18) L2|LINE|L2 -37722 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 187.75-33 chr3 95982025 95982237 + 1.25 NA Intergenic Intergenic -298938 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 280.75-7 chr20 44151525 44151958 + 1.25 NA intron (NM_020433, intron 2 of 5) intron (NM_020433, intron 2 of 5) 35447 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 156-20 chr11 121008591 121008791 + 1.25 NA Intergenic MIR|SINE|MIR -15381 NM_152715 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 195.5-3 chr1 67688247 67688436 + 1.25 NA TTS (NM_001199742) TTS (NM_001199742) 3140 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 177-48 chr6 53445458 53445664 + 1.25 NA Intergenic L1ME3G|LINE|L1 -96382 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 131.75-61 chr5 14977904 14978049 + 1.25 NA Intergenic Intergenic -106198 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 135.25-41 chr2 19343903 19344044 + 1.25 NA Intergenic L1MC5a|LINE|L1 -4456 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 176.25-14 chr12 25873204 25873516 + 1.25 NA TTS (NR_036188) TTS (NR_036188) 719 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 119.25-32 chr16 10716627 10716816 + 1.25 NA Intergenic SATR1|Satellite|Satellite -21791 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 227.75-28 chrX 102620041 102620420 + 1.25 NA intron (NR_146584, intron 4 of 18) L1PREC2|LINE|L1 20715 NM_022838 64860 Hs.522729 NM_022838 ENSG00000125962 ARMCX5 GASP5 armadillo repeat containing X-linked 5 protein-coding 207.25-14 chr2 106700713 106700985 + 1.25 NA Intergenic L1MC3|LINE|L1 185179 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 129-2 chr1 81893200 81893351 + 1.25 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 90822 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 175.75-18 chr2 24292293 24292489 + 1.25 NA intron (NM_001348182, intron 15 of 38) intron (NM_001348182, intron 15 of 38) 68145 NM_001348183 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 194.25-16 chr14 74503063 74503263 + 1.25 NA intron (NM_000428, intron 33 of 35) intron (NM_000428, intron 33 of 35) 9398 NM_194279 122961 Hs.291079 NM_194279 ENSG00000165898 ISCA2 HBLD1|ISA2|MMDS4|c14_5557 iron-sulfur cluster assembly 2 protein-coding 204.5-63 chr8 72396723 72397024 + 1.25 NA Intergenic Intergenic -140352 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 254.75-11 chr16 9312081 9312361 + 1.25 NA Intergenic Intergenic -43367 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 137-40 chr2 185815199 185815383 + 1.25 NA intron (NM_173651, intron 18 of 22) intron (NM_173651, intron 18 of 22) -15140 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 172.25-29 chr18 65964121 65964317 + 1.25 NA Intergenic Intergenic 213207 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 295-7 chr3 40362300 40362735 + 1.25 NA Intergenic Intergenic -24667 NM_001248 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 196.75-8 chr14 54415224 54415535 + 1.25 NA intron (NM_001330173, intron 5 of 8) MIR|SINE|MIR 18372 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 290.5-3 chr1 185777017 185777383 + 1.25 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 42809 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 184.75-32 chr2 29952037 29952187 + 1.25 NA Intergenic Intergenic -30526 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 167.5-56 chr3 128783759 128783949 + 1.25 NA intron (NM_004637, intron 1 of 5) intron (NM_004637, intron 1 of 5) 57718 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 208.25-8 chr14 62475013 62475323 + 1.25 NA Intergenic L1MEj|LINE|L1 -335195 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 174.5-38 chr2 47231806 47232004 + 1.25 NA intron (NR_110207, intron 1 of 2) AluJr|SINE|Alu -54969 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 314.75-7 chr20 56116345 56116698 + 1.25 NA Intergenic L2a|LINE|L2 -111002 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 172.75-17 chr19 57639731 57639928 + 1.25 NA intron (NM_001322306, intron 3 of 4) L1MB3|LINE|L1 6661 NR_049752 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 196.5 chr1 8699073 8699336 + 1.25 NA intron (NM_001042681, intron 1 of 22) MIR|SINE|MIR 118436 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 191.25-14 chr11 43628480 43628653 + 1.25 NA Intergenic Intergenic 47172 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 142.75-3 chr1 96785618 96785776 + 1.25 NA intron (NM_001300986, intron 8 of 13) intron (NM_001300986, intron 8 of 13) 63059 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 201.25-7 chr11 68756036 68756361 + 1.25 NA 3' UTR (NM_001876, exon 19 of 19) 3' UTR (NM_001876, exon 19 of 19) -4678 NM_004923 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 225.75-11 chr15 44083925 44084137 + 1.25 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 110415 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 202-3 chr11 113291676 113291899 + 1.25 NA Intergenic Intergenic -17886 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 217.25-8 chr11 19419847 19420070 + 1.25 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 69234 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 158.75-10 chr11 33548507 33548638 + 1.25 NA intron (NM_012194, intron 4 of 20) intron (NM_012194, intron 4 of 20) 152168 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 134-46 chr21 28388497 28388644 + 1.25 NA Intergenic Intergenic -150748 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 158-40 chr3 50180697 50180855 + 1.25 NA intron (NM_001318798, intron 6 of 17) Tigger1|DNA|TcMar-Tigger -10834 NM_000172 2779 Hs.517978 NM_000172 ENSG00000114349 GNAT1 CSNB1G|CSNBAD3|GBT1|GNATR G protein subunit alpha transducin 1 protein-coding 191-48 chr6 150800334 150800621 + 1.25 NA intron (NM_001029884, intron 6 of 16) MER91A|DNA|hAT-Tip100 -65202 NM_001242767 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 183-38 chr20 31749398 31749604 + 1.25 NA intron (NM_012112, intron 2 of 17) MIR|SINE|MIR 10211 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 311-8 chr2 31984864 31985253 + 1.25 NA intron (NR_126034, intron 1 of 6) intron (NR_126034, intron 1 of 6) 25606 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 191.25-50 chr5 9302716 9303000 + 1.25 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -208475 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 136.75-37 chr16 87532006 87532191 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR 37911 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 204-13 chr14 59162112 59162490 + 1.25 NA Intergenic Intergenic -26366 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 191-41 chr4 106762557 106762893 + 1.25 NA Intergenic Intergenic 273588 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 153.25-51 chr8 11190294 11190666 + 1.25 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 10886 NR_138153 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 144.25-29 chr16 86570676 86570899 + 1.25 NA Intergenic Intergenic -3026 NR_125795 103752587 Hs.609366 NR_125795 ENSG00000260944 FOXC2-AS1 ODRUL FOXC2 antisense RNA 1 ncRNA 152.25-7 chr1 216513296 216513512 + 1.25 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -89956 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 164-4 chr1 235462703 235462889 + 1.25 NA TTS (NM_001277155).2 TTS (NM_001277155).2 41656 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 140.25-41 chr2 232627803 232627980 + 1.25 NA intron (NM_001243252, intron 1 of 3) L1MB7|LINE|L1 -5713 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 217.75-22 chr2 134510287 134510638 + 1.25 NA intron (NM_030923, intron 4 of 7) L2|LINE|L2 208538 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 156.75-51 chr2 180976136 180976307 + 1.25 NA Intergenic Intergenic -4164 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 118-51 chr4 160199900 160200076 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -422204 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 205.5-62 chr8 135183125 135183425 + 1.25 NA Intergenic Intergenic -50856 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 173.5-48 chr2 132399895 132400160 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -16778 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 257.25-8 chr15 61963933 61964390 + 1.25 NA intron (NM_001018088, intron 31 of 81) intron (NM_001018088, intron 31 of 81) 96286 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 170.5-19 chr11 112917898 112918058 + 1.25 NA Intergenic Intergenic -43442 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 135.5-11 chr10 88935940 88936133 + 1.25 NA intron (NR_125373, intron 3 of 4) intron (NR_125373, intron 3 of 4) 3352 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 149.75-20 chr16 81836737 81836925 + 1.25 NA intron (NM_002661, intron 2 of 32) MIRb|SINE|MIR 57540 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 183-4 chr1 210938072 210938350 + 1.25 NA intron (NM_002238, intron 6 of 10) intron (NM_002238, intron 6 of 10) 195163 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 212.75-26 chr5 19830355 19830589 + 1.25 NA intron (NM_001349559, intron 3 of 12) L1PA15|LINE|L1 55800 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 219.75-10 chr14 38756261 38756476 + 1.25 NA intron (NR_039982, intron 4 of 4) HAL1b|LINE|L1 -126228 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 200.75-28 chr4 102549574 102549897 + 1.25 NA intron (NM_003998, intron 5 of 23) L2-1_AMi|LINE|L2 -47249 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 379 chr1 71028617 71029186 + 1.25 NA intron (NM_198719, intron 1 of 3) intron (NM_198719, intron 1 of 3) -17605 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 204-36 chr6 103896203 103896468 + 1.25 NA Intergenic L1MEf|LINE|L1 963211 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 238.25-13 chr2 45104982 45105210 + 1.25 NA Intergenic Intergenic -95644 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 137.75-89 chr8 127085097 127085352 + 1.25 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -3003 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 147.25-33 chr2 117327455 117327638 + 1.25 NA Intergenic Intergenic -487145 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 166.75-59 chr9 5217044 5217189 + 1.25 NA Intergenic Intergenic -14303 NM_002195 3641 Hs.418506 NM_002195 ENSG00000120211 INSL4 EPIL|PLACENTIN insulin like 4 protein-coding 145.5-31 chr16 11364987 11365155 + 1.25 NA Intergenic Intergenic 19612 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 195.5-48 chr20 10680193 10680354 + 1.25 NA Intergenic Intergenic -6274 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 149.75-52 chr5 92844298 92844466 + 1.25 NA Intergenic Intergenic 726961 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 164.75-18 chr12 27402588 27402784 + 1.25 NA intron (NM_001248003, intron 11 of 14) intron (NM_001248003, intron 11 of 14) 43948 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 199-43 chr7 1062358 1062662 + 1.25 NA intron (NM_001134395, intron 2 of 4) intron (NM_001134395, intron 2 of 4) 7140 NM_001303474 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 150-39 chr2 127411567 127411740 + 1.25 NA Intergenic Intergenic -6767 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 153.5-22 chr11 114310098 114310226 + 1.25 NA intron (NM_006169, intron 2 of 2) L1MB7|LINE|L1 14349 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 229-16 chr2 35850631 35850887 + 1.25 NA Intergenic Intergenic 379354 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 286.5-8 chr18 3397932 3398240 + 1.25 NA Intergenic MIR|SINE|MIR -13841 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 255.25-13 chr2 121294702 121294964 + 1.25 NA Intergenic Intergenic -9631 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 177-9 chr11 88666962 88667274 + 1.25 NA intron (NM_001143831, intron 2 of 8) L1ME3A|LINE|L1 162542 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 171.75-59 chr8 104027012 104027194 + 1.25 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -196232 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 205.5-31 chr21 30045331 30045611 + 1.25 NA Intergenic Intergenic -105419 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 281.75-17 chr6 65423104 65423382 + 1.25 NA intron (NM_198283, intron 4 of 9) L1ME3A|LINE|L1 121825 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 115.5-56 chr3 29720205 29720333 + 1.25 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 213887 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 197.25-50 chr5 104689311 104689514 + 1.25 NA Intergenic Intergenic -410062 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 277-8 chr15 56438994 56439392 + 1.25 NA intron (NM_018365, intron 7 of 9) L1MD2|LINE|L1 25944 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 135.75-100 chr7 131032051 131032233 + 1.25 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 74888 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 159-42 chr20 39703515 39703670 + 1.25 NA Intergenic AluJr4|SINE|Alu -300869 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 199-29 chr3 52240171 52240426 + 1.25 NA non-coding (NR_135307, exon 2 of 2) non-coding (NR_135307, exon 2 of 2) 1060 NR_135307 101929054 Hs.281931 NR_135307 ENSG00000243224 LOC101929054 - uncharacterized LOC101929054 ncRNA 168.75-10 chr13 27361245 27361461 + 1.25 NA Intergenic Intergenic -63266 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 158-7 chr11 6700959 6701250 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie -17764 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 151-17 chr14 62585247 62585487 + 1.25 NA Intergenic L1ME2z|LINE|L1 -445394 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 226.75-10 chr18 31901833 31902150 + 1.25 NA intron (NM_014939, intron 9 of 28) intron (NM_014939, intron 9 of 28) 41137 NM_014939 22878 Hs.202001 NM_014939 ENSG00000153339 TRAPPC8 GSG1|HsT2706|KIAA1012|TRS85 trafficking protein particle complex 8 protein-coding 219.75 chr1 114466647 114466937 + 1.25 NA intron (NM_015906, intron 1 of 19) AluSp|SINE|Alu 44411 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 282-15 chr2 159149354 159149701 + 1.25 NA intron (NM_001350065, intron 7 of 27) intron (NM_001350065, intron 7 of 27) -37308 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 121.75-43 chr2 143358044 143358180 + 1.25 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 228693 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 125.75-6 chr1 169225897 169226007 + 1.25 NA intron (NR_104229, intron 10 of 12) intron (NR_104229, intron 10 of 12) 119262 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 272.25-10 chr2 14950940 14951358 + 1.25 NA Intergenic Intergenic 318432 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 258.75-21 chr4 77451761 77451987 + 1.25 NA Intergenic LTR67B|LTR|ERVL -59879 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 120.5-81 chr5 9431106 9431288 + 1.25 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -80136 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 207.25-3 chr1 170220802 170221140 + 1.25 NA intron (NR_146891, intron 1 of 4) intron (NR_146891, intron 1 of 4) 46592 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 120.75-52 chr2 106842370 106842561 + 1.25 NA intron (NR_136313, intron 1 of 4) intron (NR_136313, intron 1 of 4) 43563 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 201.5-26 chr18 76070357 76070584 + 1.25 NA Intergenic L1MEg|LINE|L1 -52528 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 240.5-27 chr2 140095236 140095451 + 1.25 NA Intergenic Intergenic 491342 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 154.75-16 chr14 61177853 61178163 + 1.25 NA Intergenic Intergenic 103330 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 147.75-64 chr5 124618587 124618828 + 1.25 NA Intergenic Intergenic 126405 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 231-28 chr4 74035677 74035900 + 1.25 NA TTS (NM_002090) TTS (NM_002090) 2901 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 139.25-77 chr7 93424660 93424803 + 1.25 NA 3' UTR (NM_001164737, exon 16 of 16) 3' UTR (NM_001164737, exon 16 of 16) 58124 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 184.25-36 chr4 166179140 166179401 + 1.25 NA Intergenic Intergenic 306033 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 172.5-3 chr10 18200694 18200919 + 1.25 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -59916 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 181.5-62 chr6 118222183 118222401 + 1.25 NA intron (NM_001029858, intron 2 of 7) L1MC5|LINE|L1 136389 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 114.75-66 chr3 174946832 174946987 + 1.25 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 87575 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 133.75-46 chr2 164280158 164280276 + 1.25 NA Intergenic L1MA6|LINE|L1 288278 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 194.5-5 chr1 247085086 247085318 + 1.25 NA Intergenic Intergenic -6389 NR_037894 100533111 Hs.732305 NR_037894 ENSG00000135747 ZNF670-ZNF695 - ZNF670-ZNF695 readthrough (NMD candidate) ncRNA 120.25-74 chr8 122686472 122686605 + 1.25 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 7568 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 130.75-37 chr2 24245134 24245293 + 1.25 NA intron (NM_001348184, intron 29 of 29) intron (NM_001348184, intron 29 of 29) 70160 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 183-58 chr5 109804021 109804265 + 1.25 NA intron (NM_002372, intron 12 of 21) intron (NM_002372, intron 12 of 21) -79039 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 170.25-27 chr16 55097742 55097955 + 1.25 NA Intergenic HAL1b|LINE|L1 166649 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 210.75-30 chr4 144155051 144155364 + 1.25 NA Intergenic L1MEg|LINE|L1 -14489 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 250.5-11 chr12 55513686 55513969 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 21449 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 191.75-47 chr9 98976437 98976622 + 1.25 NA intron (NM_001855, intron 2 of 41) intron (NM_001855, intron 2 of 41) 32622 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 177.75-57 chr7 120362780 120363138 + 1.25 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 89784 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 137-63 chr7 84187478 84187633 + 1.25 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 7234 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 209.25-8 chr14 51954376 51954637 + 1.25 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -35040 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 147-73 chr7 31419092 31419249 + 1.25 NA Intergenic MIR|SINE|MIR -78444 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 162-59 chr8 78800615 78800776 + 1.25 NA intron (NM_001199886, intron 1 of 4) intron (NM_001199886, intron 1 of 4) 4768 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 135-11 chr10 54017323 54017458 + 1.25 NA intron (NM_001354411, intron 21 of 34) L1PA16|LINE|L1 -468840 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 200-42 chr6 62137721 62137898 + 1.25 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 148416 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 270.25-2 chr10 85580682 85580942 + 1.25 NA intron (NR_038986, intron 2 of 2) intron (NR_038986, intron 2 of 2) 3081 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 195.5-43 chr2 81904593 81904873 + 1.25 NA Intergenic L1MC3|LINE|L1 -437787 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 189.25-42 chr7 127935273 127935520 + 1.25 NA intron (NM_014390, intron 15 of 23) intron (NM_014390, intron 15 of 23) -62113 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 133.5-14 chr10 83448163 83448348 + 1.25 NA Intergenic L1ME1|LINE|L1 228834 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 229.25-12 chr2 175218220 175218420 + 1.25 NA Intergenic L1MB8|LINE|L1 -36610 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 235.25-7 chr12 63170059 63170347 + 1.25 NA Intergenic Intergenic -17393 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 328.25-8 chr2 24524784 24525146 + 1.25 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 33088 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 183.75-56 chr8 90236494 90236718 + 1.25 NA intron (NR_051989, intron 1 of 3) intron (NR_051989, intron 1 of 3) 15118 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 131.75-82 chr8 112664024 112664286 + 1.25 NA intron (NM_001363185, intron 15 of 66) intron (NM_001363185, intron 15 of 66) 20662 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 230.75-20 chr5 109493665 109493963 + 1.25 NA Intergenic LTR40b|LTR|ERVL -83840 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 248.5-2 chr1 231913909 231914242 + 1.25 NA intron (NM_001164541, intron 9 of 9) MLT1J|LTR|ERVL-MaLR -11759 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 158.75-34 chr2 149651873 149652049 + 1.25 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -64186 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 238.25-21 chr4 33101034 33101244 + 1.25 NA Intergenic Intergenic 750101 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 182.75-22 chr20 46081793 46082012 + 1.25 NA intron (NM_001348150, intron 1 of 8) intron (NM_001348150, intron 1 of 8) 8060 NM_001348150 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 175.5-39 chr18 76791992 76792210 + 1.25 NA Intergenic Intergenic 30194 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 202.25-30 chr5 11797650 11797944 + 1.25 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 106649 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 146.5-27 chr14 63628280 63628486 + 1.25 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 13488 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 182.25-21 chr2 96988088 96988357 + 1.25 NA Intergenic Intergenic -1642 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 133.75-80 chr9 83659089 83659352 + 1.25 NA TTS (NM_053067) TTS (NM_053067) 36077 NR_046421 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 120.5-98 chr7 38322755 38322922 + 1.25 NA Intergenic Intergenic -18739 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 155.5-52 chr2 25566531 25566678 + 1.25 NA intron (NM_001320937, intron 8 of 8) MER94|DNA|hAT-Blackjack 83618 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 142.5-39 chr2 14459312 14459496 + 1.25 NA Intergenic MER66-int|LTR|ERV1 -58446 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 164.25-28 chr2 6484659 6484907 + 1.25 NA Intergenic Intergenic -109361 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 158-16 chr12 98168896 98169107 + 1.25 NA Intergenic Intergenic -173553 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 138.5-83 chr4 171595777 171596011 + 1.25 NA Intergenic Intergenic 42869 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 179-47 chr5 62071345 62071561 + 1.25 NA Intergenic Intergenic -234709 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 268.5-13 chr17 41966286 41966581 + 1.25 NA promoter-TSS (NM_033133) promoter-TSS (NM_033133) -362 NM_033133 1267 Hs.273621 NM_033133 ENSG00000173786 CNP CNP1 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 266.75-9 chr6 160412296 160412659 + 1.25 NA intron (NM_021977, intron 5 of 10) intron (NM_021977, intron 5 of 10) 64099 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 209.75-12 chr15 48424018 48424334 + 1.25 NA intron (NM_000138, intron 60 of 65) Tigger20a|DNA|TcMar-Tigger 91979 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 186.5-53 chr7 30645908 30646444 + 1.25 NA Intergenic L2|LINE|L2 36280 NM_001883 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 207.5-23 chr18 32738862 32739092 + 1.25 NA intron (NM_020805, intron 3 of 8) intron (NM_020805, intron 3 of 8) 34046 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 225.5-9 chr10 33836058 33836454 + 1.25 NA Intergenic Intergenic -63576 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 192.75-25 chr3 69584474 69584892 + 1.25 NA Intergenic Intergenic -154781 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 204-11 chr11 40226463 40226661 + 1.25 NA intron (NM_020929, intron 3 of 4) L3b|LINE|CR1 66568 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 145.25-2 chr1 24819006 24819187 + 1.25 NA intron (NM_013943, intron 3 of 5) intron (NM_013943, intron 3 of 5) 73649 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 208.75-7 chr10 87773376 87773596 + 1.25 NA intron (NM_001321967, intron 6 of 9) MamSINE1|SINE|tRNA-RTE 44745 NR_135914 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 137.5-121 chr8 130541657 130541848 + 1.25 NA Intergenic Intergenic -98078 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 147.75-45 chr3 31307831 31307978 + 1.25 NA Intergenic Intergenic -146117 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 184.5-65 chr5 99345886 99346077 + 1.25 NA Intergenic L1M2|LINE|L1 -188009 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 125.5-109 chr6 45394440 45394684 + 1.25 NA intron (NM_001015051, intron 2 of 7) L1MCb|LINE|L1 -16628 NM_181356 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 260.75-15 chr3 88652743 88653024 + 1.25 NA Intergenic L1M5|LINE|L1 314427 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 234-24 chr2 106684346 106684677 + 1.25 NA Intergenic L1MD2|LINE|L1 197147 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 222-21 chr2 148026996 148027308 + 1.25 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -5548 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 149.5-63 chr20 62930704 62930953 + 1.25 NA intron (NM_022105, intron 1 of 5) intron (NM_022105, intron 1 of 5) -4277 NM_080796 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 170.25 chr1 56852152 56852429 + 1.25 NA Intergenic Intergenic -2480 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 142.75-82 chr8 17528687 17528843 + 1.25 NA intron (NM_001370338, intron 2 of 12) L3|LINE|CR1 -10012 NM_001164771 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 171.25-2 chr1 75076544 75076781 + 1.25 NA Intergenic Intergenic -51772 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 143.25-73 chr8 122631783 122631991 + 1.25 NA Intergenic MLT2C1|LTR|ERVL 62219 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 156-18 chr11 83981636 83981881 + 1.25 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 291522 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 231.5-16 chr18 21144413 21144690 + 1.25 NA Intergenic Intergenic -32738 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 170.25-45 chr22 25033224 25033517 + 1.25 NA intron (NM_001145206, intron 2 of 10) AluJo|SINE|Alu 5396 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 366-8 chr20 23942071 23942458 + 1.25 NA Intergenic Intergenic 44611 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 269.5-10 chr12 59077441 59077910 + 1.25 NA Intergenic Intergenic -157137 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 195.25-43 chr7 47501836 47502110 + 1.25 NA intron (NM_022748, intron 3 of 30) intron (NM_022748, intron 3 of 30) -37170 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 122.25-73 chr5 13231624 13231775 + 1.25 NA Intergenic Intergenic -198813 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 125.25-80 chr7 55560548 55560756 + 1.25 NA intron (NM_030796, intron 1 of 4) MLT1D|LTR|ERVL-MaLR -6765 NM_001321248 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 227.25-15 chr16 80253073 80253284 + 1.25 NA intron (NR_120307, intron 2 of 5) MIR|SINE|MIR -287556 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 134.25 chr1 79997776 79997955 + 1.25 NA Intergenic Intergenic -537890 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 383.5-2 chr11 115900015 115900364 + 1.25 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -139989 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 244.75-26 chr7 48452686 48453084 + 1.25 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 281427 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 115.25-25 chr12 24313222 24313429 + 1.25 NA intron (NM_152989, intron 3 of 17) AluJr|SINE|Alu 90054 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 190.5-67 chr7 3568419 3568648 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 267281 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 143.75-87 chr9 38215436 38215691 + 1.25 NA Intergenic Intergenic -146336 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 259-19 chr20 31963706 31964056 + 1.25 NA Intergenic Intergenic -4270 NM_001011718 343702 Hs.666444 NM_001011718 ENSG00000260903 XKR7 C20orf159|dJ310O13.4 XK related 7 protein-coding 221-4 chr1 232312544 232312767 + 1.25 NA Intergenic Intergenic 202953 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 218-5 chr10 14450853 14451126 + 1.25 NA Intergenic L1M3|LINE|L1 14413 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 147.75-36 chr2 125736376 125736522 + 1.25 NA Intergenic L1MA9|LINE|L1 381536 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 250-31 chr8 101950480 101950766 + 1.25 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -33809 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 174.75-52 chr7 71108304 71108572 + 1.25 NA Intergenic L1M5|LINE|L1 -23706 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 119.25-88 chr7 55896085 55896223 + 1.25 NA intron (NM_182633, intron 1 of 6) intron (NM_182633, intron 1 of 6) 8698 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 165-21 chr15 57443079 57443272 + 1.25 NA intron (NM_032866, intron 4 of 18) intron (NM_032866, intron 4 of 18) 66670 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 208.75-33 chrX 79869649 79869878 + 1.25 NA Intergenic AluSq2|SINE|Alu -144990 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 140.25-20 chr14 36192727 36192845 + 1.25 NA Intergenic Intergenic -16135 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 253-4 chr1 200164027 200164420 + 1.25 NA intron (NM_205860, intron 7 of 7) MSTA|LTR|ERVL-MaLR 121398 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 198.75-46 chr7 63110782 63110992 + 1.25 NA Intergenic Intergenic 193169 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 398.5-2 chr11 122978343 122978691 + 1.25 NA intron (NM_001098169, intron 2 of 2) intron (NM_001098169, intron 2 of 2) 3317 NM_001098169 390259 Hs.449687 NM_001098169 ENSG00000188909 BSX BSX1 brain specific homeobox protein-coding 294.25-6 chr2 13693642 13693951 + 1.25 NA Intergenic Intergenic -686783 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 209-40 chr8 138886071 138886632 + 1.25 NA intron (NM_152888, intron 1 of 64) L2b|LINE|L2 27690 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 187-35 chr3 11752735 11752985 + 1.25 NA Intergenic AluJo|SINE|Alu -32321 NM_001284390 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 163.5-24 chr12 54413178 54413390 + 1.25 NA intron (NM_002205, intron 1 of 29) intron (NM_002205, intron 1 of 29) 5982 NM_002205 3678 Hs.505654 NM_002205 ENSG00000161638 ITGA5 CD49e|FNRA|VLA-5|VLA5A integrin subunit alpha 5 protein-coding 231-40 chr8 10535617 10535837 + 1.25 NA intron (NM_001197020, intron 4 of 4) L1PA15|LINE|L1 10195 NM_198464 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 160.75-61 chr7 52980543 52980723 + 1.25 NA Intergenic Intergenic -55000 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 140-71 chr9 133158536 133158683 + 1.25 NA intron (NM_001288572, intron 3 of 6) intron (NM_001288572, intron 3 of 6) 5305 NM_001288573 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 205.75-34 chr5 134149185 134149399 + 1.25 NA 3' UTR (NM_170679, exon 6 of 6) 3' UTR (NM_170679, exon 6 of 6) 25674 NM_001366502 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 264.25-16 chr6 139858404 139858801 + 1.25 NA intron (NR_138542, intron 2 of 2) intron (NR_138542, intron 2 of 2) 3752 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 210.75-32 chr6 49039196 49039503 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR 423904 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 175-3 chr1 188688081 188688232 + 1.25 NA Intergenic Intergenic 1244528 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 281-24 chr8 111807302 111807660 + 1.25 NA Intergenic Intergenic 430842 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 162-12 chr15 100609429 100609686 + 1.25 NA intron (NM_198243, intron 2 of 5) intron (NM_198243, intron 2 of 5) 6968 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 310-4 chr11 48210540 48210822 + 1.25 NA Intergenic Intergenic -6129 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 201.25-20 chr20 62128902 62129249 + 1.25 NA intron (NM_144703, intron 3 of 8) intron (NM_144703, intron 3 of 8) 6600 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 166.25-60 chr9 108685522 108685677 + 1.25 NA Intergenic LTR16B2|LTR|ERVL 170387 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 190-32 chr20 61349943 61350148 + 1.25 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 97784 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 148.25-53 chr3 177837400 177837662 + 1.25 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 20666 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 221.5-41 chr6 103425711 103426012 + 1.25 NA Intergenic L1M3e|LINE|L1 1433685 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 129.25-57 chr3 156681032 156681168 + 1.25 NA intron (NM_015508, intron 2 of 5) intron (NM_015508, intron 2 of 5) 4436 NM_001184718 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 122.25-93 chr8 110335360 110335495 + 1.25 NA Intergenic Intergenic -359656 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 193.75-4 chr10 16857134 16857324 + 1.25 NA intron (NM_001081, intron 59 of 66) intron (NM_001081, intron 59 of 66) -39775 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 313-14 chr8 87817238 87817688 + 1.25 NA Intergenic LTR37A|LTR|ERV1 56552 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 230.75-3 chr10 64977508 64977817 + 1.25 NA Intergenic Intergenic -53144 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 127.75-4 chr1 68359557 68359670 + 1.25 NA Intergenic Intergenic 90341 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 148.75-41 chr20 23960879 23961049 + 1.25 NA Intergenic LOR1b|LTR|ERV1 25911 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 224-27 chr6 69479246 69479603 + 1.25 NA Intergenic L1MC|LINE|L1 317042 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 171.25-23 chr17 75929170 75929342 + 1.25 NA intron (NM_001319193, intron 6 of 28) AluJo|SINE|Alu 8976 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 173.25-55 chr5 98914897 98915060 + 1.25 NA intron (NM_001364113, intron 2 of 36) intron (NM_001364113, intron 2 of 36) 11556 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 139.5-18 chr12 16093994 16094182 + 1.25 NA Intergenic Intergenic 182756 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 116-28 chr16 63635645 63635842 + 1.25 NA Intergenic L1PB2|LINE|L1 1486320 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 280.25-18 chr5 102823993 102824252 + 1.25 NA intron (NM_001364582, intron 1 of 24) intron (NM_001364582, intron 1 of 24) 15924 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 178.25-6 chr1 100513728 100513933 + 1.25 NA intron (NM_001319210, intron 16 of 16) intron (NM_001319210, intron 16 of 16) -24309 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 127.75-69 chr4 158036662 158036825 + 1.25 NA Intergenic L1ME4a|LINE|L1 -134009 NR_147407 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 167.25-28 chr15 57724174 57724415 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 17580 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 157.25-55 chr6 95381093 95381367 + 1.25 NA Intergenic Intergenic 196221 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 137.25-12 chr10 100002298 100002515 + 1.25 NA intron (NM_015221, intron 1 of 16) intron (NM_015221, intron 1 of 16) 7541 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 191-45 chr6 67677692 67677894 + 1.25 NA Intergenic Intergenic -377558 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 220.75-31 chr8 88685052 88685326 + 1.25 NA Intergenic L2c|LINE|L2 -357706 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 184.25-38 chr5 32425845 32426015 + 1.25 NA intron (NM_016107, intron 2 of 19) Charlie1a|DNA|hAT-Charlie 18810 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 247.75-15 chr2 177342073 177342321 + 1.25 NA intron (NR_026966, intron 1 of 8) L2|LINE|L2 -28315 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 190.5-23 chr13 78220650 78220927 + 1.25 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 165933 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 202.5-51 chr7 55027176 55027464 + 1.25 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 8288 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 317.25-14 chr5 20176548 20177037 + 1.25 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -128759 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 227-3 chr1 116006157 116006507 + 1.25 NA intron (NM_018420, intron 2 of 11) intron (NM_018420, intron 2 of 11) -29056 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 229-28 chr5 116076882 116077108 + 1.25 NA Intergenic Intergenic -8030 NR_146218 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 143-26 chr14 89145569 89145782 + 1.25 NA Intergenic MER33|DNA|hAT-Charlie 271558 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 318-29 chr8 141301989 141302272 + 1.25 NA Intergenic Charlie2b|DNA|hAT-Charlie -38419 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 264.25-4 chr16 71794082 71794382 + 1.25 NA intron (NM_001128, intron 1 of 22) L1M5|LINE|L1 14602 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 149.75-26 chr2 38332932 38333051 + 1.25 NA intron (NM_001330461, intron 1 of 12) FLAM_A|SINE|Alu 43539 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 231.5-19 chr19 9405358 9405564 + 1.25 NA Intergenic MER66-int|LTR|ERV1 29145 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 278.25-23 chr8 48737967 48738338 + 1.25 NA Intergenic Intergenic -2841 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 172.5-77 chr7 8113316 8113480 + 1.25 NA non-coding (NR_146926, exon 14 of 14) non-coding (NR_146926, exon 14 of 14) 144602 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 162.25-26 chr22 19774013 19774281 + 1.25 NA intron (NM_005992, intron 8 of 9) L1MB2|LINE|L1 17444 NM_005992 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 120-50 chr2 173670379 173670578 + 1.25 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 293402 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 292.75-13 chr5 148724803 148725053 + 1.25 NA Intergenic MIR|SINE|MIR -70401 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 190-29 chr2 204546665 204546841 + 1.25 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 1278 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 177.75-3 chr10 50471796 50472022 + 1.25 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 152047 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 243.25-21 chrX 52230500 52230761 + 1.25 NA Intergenic L1MA10|LINE|L1 40008 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 205-45 chr9 90102574 90102829 + 1.25 NA Intergenic Intergenic -61202 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 191.75-23 chr2 102282342 102282540 + 1.25 NA Intergenic Intergenic -29061 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 233.5-35 chr3 94528116 94528387 + 1.25 NA Intergenic Intergenic -410012 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 146.75-67 chr9 36140934 36141108 + 1.25 NA intron (NM_001287014, intron 1 of 1) intron (NM_001287014, intron 1 of 1) 4236 NM_001287014 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 183.75-14 chr14 46558768 46558980 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie 87515 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 160.25-43 chr4 55163296 55163524 + 1.25 NA Intergenic Intergenic -37815 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 176.75-35 chr4 36424216 36424582 + 1.25 NA Intergenic Intergenic 2029 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 190.25-4 chr1 58937716 58938016 + 1.25 NA Intergenic Intergenic -82610 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 203-16 chr18 12652441 12652666 + 1.25 NA intron (NM_020148, intron 1 of 15) intron (NM_020148, intron 1 of 15) 4179 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 308.5-16 chr8 144536635 144537029 + 1.25 NA intron (NM_001308208, intron 6 of 10) intron (NM_001308208, intron 6 of 10) -7721 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 165.75-63 chr6 89758473 89758616 + 1.25 NA intron (NM_014611, intron 18 of 101) intron (NM_014611, intron 18 of 101) 61250 NM_014611 23195 Hs.529948 NM_014611 ENSG00000112159 MDN1 Rea1 midasin AAA ATPase 1 protein-coding 197.5-63 chr9 101550484 101550769 + 1.25 NA exon (NM_019592, exon 10 of 20) exon (NM_019592, exon 10 of 20) 16773 NM_019592 56254 Hs.729085 NM_019592 ENSG00000155827 RNF20 BRE1|BRE1A|hBRE1 ring finger protein 20 protein-coding 254.75-22 chrX 84619864 84620169 + 1.25 NA Intergenic L1MB5|LINE|L1 -117563 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 136.5-60 chr20 43251753 43252010 + 1.25 NA Intergenic Intergenic -61975 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 223.25-23 chr6 49407824 49408020 + 1.25 NA Intergenic L1M4|LINE|L1 55331 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 285-11 chr2 194928142 194928487 + 1.25 NA Intergenic Intergenic 197719 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 137-21 chr14 52056423 52056586 + 1.25 NA intron (NM_007361, intron 3 of 21) MIRb|SINE|MIR 12555 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 222.5-26 chr20 35960161 35960661 + 1.25 NA Intergenic AluJo|SINE|Alu -5052 NM_016558 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 225.5-33 chr3 79401170 79401504 + 1.25 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -10390 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 166-14 chr11 79464563 79464875 + 1.25 NA Intergenic Intergenic -23689 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 124-12 chr11 42862519 42862672 + 1.25 NA Intergenic L1ME2|LINE|L1 406774 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 311-5 chr11 95597080 95597435 + 1.25 NA Intergenic L1MDa|LINE|L1 192525 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 172.75-43 chr8 79406804 79407023 + 1.25 NA Intergenic Intergenic 74725 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 131-10 chr1 244187718 244187883 + 1.25 NA Intergenic Intergenic 134595 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 125-90 chr7 111719789 111719996 + 1.25 NA Intergenic L1PA15|LINE|L1 -88613 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 137.5-114 chr8 68390156 68390289 + 1.25 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -58731 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 210.5-45 chr4 77600118 77600560 + 1.25 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 88586 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 156.5-3 chr1 107827655 107828052 + 1.25 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -69370 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 402.75-5 chr7 71995190 71995632 + 1.25 NA intron (NM_001363460, intron 4 of 5) LTR9A1|LTR|ERV1 341980 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 139.5-36 chr2 1723748 1723905 + 1.25 NA intron (NM_012293, intron 1 of 22) intron (NM_012293, intron 1 of 22) 20689 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 149.75-74 chrX 21822426 21822560 + 1.25 NA Intergenic L1MEd|LINE|L1 -17124 NM_015884 51360 Hs.443490 NM_015884 ENSG00000012174 MBTPS2 BRESEK|IFAP|KFSD|KFSDX|OI19|OLMSX|S2P membrane bound transcription factor peptidase, site 2 protein-coding 237.75-39 chr5 50278780 50278978 + 1.25 NA Intergenic L1ME3|LINE|L1 162409 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 126.5-59 chr2 225607350 225607483 + 1.25 NA intron (NM_001371273, intron 5 of 7) intron (NM_001371273, intron 5 of 7) 206530 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 197.25-31 chr16 11638189 11638577 + 1.25 NA Intergenic Intergenic -30072 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 167-55 chr5 151539865 151540122 + 1.25 NA intron (NM_001447, intron 10 of 22) intron (NM_001447, intron 10 of 22) -17845 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 221-28 chr3 111899486 111899695 + 1.25 NA intron (NM_001134437, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 39763 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 243-22 chr4 115726757 115727080 + 1.25 NA Intergenic Intergenic -572807 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 188.75-15 chr18 1791768 1792105 + 1.25 NA Intergenic Intergenic -432307 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 154.5-52 chr3 4618864 4619023 + 1.25 NA intron (NM_001168272, intron 4 of 60) HAL1|LINE|L1 125595 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 123-42 chr4 102695383 102695512 + 1.25 NA intron (NM_005908, intron 5 of 16) intron (NM_005908, intron 5 of 16) 65521 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 270.75-14 chr3 80434367 80434756 + 1.25 NA Intergenic Intergenic -330336 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 160-4 chr10 71602778 71603029 + 1.25 NA intron (NM_052836, intron 9 of 12) intron (NM_052836, intron 9 of 12) -90983 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 139-30 chr2 28305499 28305729 + 1.25 NA intron (NM_001261840, intron 11 of 11) L1ME2|LINE|L1 4845 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 124.25-69 chr5 55690063 55690183 + 1.25 NA intron (NM_001349385, intron 3 of 14) intron (NM_001349385, intron 3 of 14) 2930 NM_001258287 153129 Hs.742101 NM_173514 ENSG00000177058 SLC38A9 URLC11 solute carrier family 38 member 9 protein-coding 211.5-10 chr12 43589674 43589903 + 1.25 NA Intergenic MER124|DNA?|DNA? -37585 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 218-15 chr15 92244560 92244804 + 1.25 NA Intergenic Intergenic -149199 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 169.5-73 chr6 164072527 164072718 + 1.25 NA Intergenic THE1C|LTR|ERVL-MaLR -401138 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 238.25-19 chr3 194602878 194603271 + 1.25 NA intron (NM_138399, intron 9 of 10) Charlie18a|DNA|hAT-Charlie 18806 NR_047573 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 161.75-43 chr5 62424696 62424930 + 1.25 NA intron (NM_001134779, intron 1 of 29) intron (NM_001134779, intron 1 of 29) 5929 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 152-41 chr3 33555095 33555268 + 1.25 NA intron (NM_001365634, intron 26 of 35) L1MA8|LINE|L1 104498 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 145.5-63 chr3 112929593 112929722 + 1.25 NA intron (NM_138806, intron 3 of 7) intron (NM_138806, intron 3 of 7) 45446 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 179-3 chr10 4803201 4803581 + 1.25 NA Intergenic Intergenic -22786 NR_073125 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 179.25-40 chr6 158104480 158104680 + 1.25 NA Intergenic L1MD3|LINE|L1 63682 NR_073096 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 260.25-22 chr7 54581659 54582080 + 1.25 NA Intergenic L1MC1|LINE|L1 24899 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 179.5-73 chr4 184169225 184169526 + 1.25 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 48498 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 161.5-51 chr2 172136093 172136311 + 1.25 NA Intergenic Charlie1b|DNA|hAT-Charlie 33196 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 172.25-15 chr12 70780193 70780400 + 1.25 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) 8624 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 220.25-34 chr4 147344178 147344436 + 1.25 NA TTS (NR_031662) TTS (NR_031662) 410 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 140.5-5 chr1 246236345 246236457 + 1.25 NA intron (NM_022743, intron 5 of 11) AluJr|SINE|Alu 181011 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 207-51 chr8 47829361 47829601 + 1.25 NA intron (NM_001081640, intron 61 of 84) intron (NM_001081640, intron 61 of 84) -91317 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 190.25-29 chr21 44518009 44518240 + 1.25 NA intron (NR_026548, intron 1 of 1) HAL1ME|LINE|L1 909 NR_026548 114043 Hs.592163 NM_153204 TSPEAR-AS2 C21orf90 TSPEAR antisense RNA 2 ncRNA 152.5-47 chr18 12232331 12232653 + 1.25 NA Intergenic L1MC2|LINE|L1 -21869 NR_134607 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 172-36 chr5 39775478 39775664 + 1.25 NA Intergenic Intergenic 255140 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 168.25-52 chr5 83453694 83453963 + 1.25 NA Intergenic Tigger3c|DNA|TcMar-Tigger -17846 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 123.75-97 chr7 7452291 7452405 + 1.25 NA exon (NM_001037763, exon 18 of 35) exon (NM_001037763, exon 18 of 35) 83525 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 118.75-91 chr6 82019383 82019519 + 1.25 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) -81030 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 187-66 chr9 136459051 136459247 + 1.25 NA exon (NM_001276418, exon 16 of 29) exon (NM_001276418, exon 16 of 29) -19304 NM_019892 56623 Hs.120998 NM_019892 ENSG00000148384 INPP5E CORS1|CPD4|JBTS1|MORMS|PPI5PIV|pharbin inositol polyphosphate-5-phosphatase E protein-coding 245.25-3 chr1 180668546 180668864 + 1.25 NA intron (NR_137330, intron 1 of 12) L1M4c|LINE|L1 36683 NM_001328662 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 186.75-49 chr5 103922668 103922880 + 1.25 NA Intergenic Intergenic -359985 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 292.5-11 chr5 116720912 116721309 + 1.25 NA Intergenic L1ME4b|LINE|L1 41099 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 286.25-3 chr1 163918305 163918589 + 1.25 NA Intergenic Intergenic -495256 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 181.25-19 chr16 63839828 63840089 + 1.25 NA Intergenic L1PA15|LINE|L1 1282105 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 206.5-30 chr2 171871248 171871593 + 1.25 NA intron (NR_047549, intron 2 of 16) AluSz|SINE|Alu 22824 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 288.75-12 chr20 20032493 20032868 + 1.25 NA intron (NM_016100, intron 5 of 5) intron (NM_016100, intron 5 of 5) 14885 NM_181527 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 267.75-3 chr11 40327626 40328004 + 1.25 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -34685 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 218-47 chr9 19185203 19185432 + 1.25 NA Intergenic Intergenic -45376 NR_073201 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 153.75-30 chr15 91593772 91593900 + 1.25 NA Intergenic L1ME2z|LINE|L1 130497 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 201.5-21 chr17 30382291 30382461 + 1.25 NA intron (NM_001199775, intron 1 of 20) intron (NM_001199775, intron 1 of 20) 1898 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 150-35 chr19 31801686 31801875 + 1.25 NA Intergenic Intergenic 209499 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 184.25-39 chr5 75866610 75866874 + 1.25 NA Intergenic Intergenic -149305 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 283.5-14 chr3 142129597 142129860 + 1.25 NA intron (NM_001178139, intron 1 of 12) intron (NM_001178139, intron 1 of 12) 19816 NM_001178139 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 196.25-25 chr17 13306641 13306827 + 1.25 NA promoter-TSS (NR_146885) promoter-TSS (NR_146885) 26 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 133.25-88 chr8 139722723 139722929 + 1.25 NA Intergenic L1ME3D|LINE|L1 -19703 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 184.75-44 chr4 62243450 62243725 + 1.25 NA Intergenic Intergenic -81822 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 233-6 chr1 195491430 195491741 + 1.25 NA Intergenic Intergenic 597130 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 136.25-8 chr10 48353493 48353661 + 1.25 NA intron (NM_001323302, intron 3 of 13) L1MD2|LINE|L1 46900 NR_136583 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 147.5-12 chr11 14642874 14643084 + 1.25 NA promoter-TSS (NM_001363569) promoter-TSS (NM_001363569) 655 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 113.25-38 chr14 41070803 41071039 + 1.25 NA intron (NR_109758, intron 3 of 3) MLT1G1|LTR|ERVL-MaLR 116210 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 277.25-18 chr3 67081962 67082326 + 1.25 NA Intergenic Intergenic 83837 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 218.5-48 chr7 31662263 31662667 + 1.25 NA Intergenic LTR86A1|LTR|ERVL -24552 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 168-56 chr5 160546032 160546199 + 1.25 NA Intergenic Tigger3a|DNA|TcMar-Tigger 60763 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 162.75-15 chr12 48996542 48996759 + 1.25 NA 3' UTR (NM_015086, exon 2 of 2) 3' UTR (NM_015086, exon 2 of 2) -1697 NR_147178 105369758 Hs.120228 NR_147178 ENSG00000257913 DDN-AS1 CAT1507 DDN and PRKAG1 antisense RNA 1 ncRNA 224.75-21 chr9 80170036 80170318 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 195154 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 165.5-62 chr3 25822957 25823112 + 1.25 NA Intergenic Intergenic 32944 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 164-43 chr4 46693414 46693596 + 1.25 NA Intergenic Zaphod|DNA|hAT-Tip100 215740 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 221.25-37 chr8 112668881 112669123 + 1.25 NA intron (NM_001363185, intron 14 of 66) intron (NM_001363185, intron 14 of 66) 25509 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 184-15 chr14 62216152 62216503 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -76354 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 168-33 chr16 88374455 88374622 + 1.25 NA Intergenic L2c|LINE|L2 -52933 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 216.25-30 chr5 43114141 43114358 + 1.25 NA Intergenic AluSg4|SINE|Alu -6665 NM_001330710 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 133.5-67 chr3 64865818 64865991 + 1.25 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -177904 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 197.75-16 chr17 76001661 76001984 + 1.25 NA intron (NM_001258, intron 2 of 7) intron (NM_001258, intron 2 of 7) 916 NM_001258 1018 Hs.706766 NM_001258 ENSG00000250506 CDK3 - cyclin dependent kinase 3 protein-coding 136.75-24 chr13 67941266 67941407 + 1.25 NA Intergenic Intergenic 568949 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 205.75-16 chr15 100886532 100886898 + 1.25 NA intron (NM_000693, intron 2 of 12) intron (NM_000693, intron 2 of 12) 6884 NM_001293815 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 227-4 chr10 19844790 19845024 + 1.25 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 28475 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 247-12 chr18 11078524 11078817 + 1.25 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 70092 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 209.75-36 chr5 130678567 130678807 + 1.25 NA Intergenic Intergenic 486569 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 119.5-65 chr2 222581566 222581724 + 1.25 NA intron (NR_130154, intron 17 of 17) intron (NR_130154, intron 17 of 17) 74447 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 220.75-33 chr8 108620638 108620851 + 1.25 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 166850 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 143.5-28 chr13 39701570 39701773 + 1.25 NA intron (NM_001145079, intron 13 of 18) L2c|LINE|L2 -37536 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 233.75-35 chr8 104498026 104498300 + 1.25 NA intron (NM_013437, intron 4 of 6) intron (NM_013437, intron 4 of 6) -13698 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 199.5-3 chr10 53465825 53466212 + 1.25 NA Intergenic Intergenic -694318 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 115-9 chr1 178243042 178243167 + 1.25 NA intron (NM_170692, intron 1 of 17) L1MDb|LINE|L1 -98347 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 251-15 chr18 2785809 2786228 + 1.25 NA intron (NM_015295, intron 45 of 47) AluSz6|SINE|Alu -60988 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 198-36 chr4 106476659 106476988 + 1.25 NA Intergenic Intergenic 43199 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 158-35 chr20 51171188 51171368 + 1.25 NA Intergenic Intergenic -148171 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 200-47 chr8 89876802 89876994 + 1.25 NA Intergenic Intergenic -24970 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 290.75 chr1 113703287 113703543 + 1.25 NA TTS (NM_001323047) TTS (NM_001323047) 55740 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 279.75-6 chr11 91764189 91764470 + 1.25 NA Intergenic L1MA3|LINE|L1 -460705 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 300.25 chr1 118117689 118117957 + 1.25 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 67405 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 175-18 chr17 52201272 52201499 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -41368 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 121.75-47 chr20 32568180 32568362 + 1.25 NA intron (NM_001256798, intron 1 of 10) intron (NM_001256798, intron 1 of 10) 17062 NM_001256798 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 221.5-32 chr3 135052211 135052534 + 1.25 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 257112 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 124.25-22 chr12 28950863 28951022 + 1.25 NA Intergenic L1MB3|LINE|L1 -198336 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 171.25-41 chr4 82558040 82558308 + 1.25 NA intron (NM_001353454, intron 1 of 7) intron (NM_001353454, intron 1 of 7) 3814 NM_001353455 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 205-36 chr6 51084343 51084766 + 1.25 NA Intergenic Intergenic 265683 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 234.5-35 chr5 163233687 163233933 + 1.25 NA Intergenic Intergenic -203761 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 201.5-16 chr14 60466139 60466385 + 1.25 NA intron (NM_174978, intron 10 of 17) intron (NM_174978, intron 10 of 17) 19801 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 190.5-38 chr20 11914987 11915172 + 1.25 NA intron (NM_001282550, intron 1 of 4) MIR3|SINE|MIR -2786 NM_001282551 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 214.75-19 chr2 206186862 206187060 + 1.25 NA intron (NM_001098199, intron 2 of 2) FLAM_C|SINE|Alu -16415 NR_104359 101669764 Hs.574781 NR_104359 GPR1-AS GPR1-AS1|GPR1AS GPR1 antisense RNA ncRNA 170-19 chr2 3744861 3745096 + 1.25 NA intron (NM_001287444, intron 4 of 10) intron (NM_001287444, intron 4 of 10) 38136 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 179.75-19 chr16 25135515 25135715 + 1.25 NA intron (NM_001032391, intron 3 of 8) intron (NM_001032391, intron 3 of 8) 13417 NR_039998 100506655 Hs.657576 NR_039998 ENSG00000260034 LCMT1-AS2 - LCMT1 antisense RNA 2 ncRNA 120-25 chr13 35639034 35639161 + 1.25 NA intron (NM_001204197, intron 9 of 17) intron (NM_001204197, intron 9 of 17) -58427 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 233.25-12 chr16 1041829 1042089 + 1.25 NA Intergenic AluSq2|SINE|Alu -30797 NM_001172560 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 197.25-34 chr2 32437464 32437733 + 1.25 NA intron (NM_016252, intron 15 of 73) Tigger4a|DNA|TcMar-Tigger 80570 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 144.25-18 chr13 62360856 62361048 + 1.25 NA Intergenic Intergenic 37295 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 118.25-46 chr2 76885974 76886121 + 1.25 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -99918 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 129.25-21 chr12 54300254 54300422 + 1.25 NA intron (NM_001261461, intron 1 of 3) intron (NM_001261461, intron 1 of 3) 677 NM_001136023 4778 Hs.75643 NM_006163 ENSG00000123405 NFE2 NF-E2|p45 nuclear factor, erythroid 2 protein-coding 151-26 chr18 6489917 6490088 + 1.25 NA Intergenic Intergenic -21414 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 248-6 chr16 63191612 63191901 + 1.25 NA Intergenic Intergenic -1155318 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 323-3 chr1 229369155 229369618 + 1.25 NA Intergenic L3|LINE|CR1 -26339 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 214.75-8 chr12 130408095 130408302 + 1.25 NA intron (NM_001351226, intron 18 of 21) intron (NM_001351226, intron 18 of 21) 70311 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 240.75-8 chr13 43930745 43931099 + 1.25 NA Intergenic L1M5|LINE|L1 51018 NM_001350643 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 172.25-42 chr22 26407856 26408058 + 1.25 NA Intergenic L1MB5|LINE|L1 -21303 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 142-9 chr10 107573343 107573508 + 1.25 NA Intergenic L1MC2|LINE|L1 -408719 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 215.25-20 chr3 109578215 109578484 + 1.25 NA Intergenic L1PB4|LINE|L1 -24479 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 334.5-7 chr17 68637789 68638270 + 1.25 NA intron (NR_110825, intron 1 of 4) THE1B|LTR|ERVL-MaLR 9875 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 249.5-27 chr7 28295854 28296304 + 1.25 NA Intergenic L1MB3|LINE|L1 -3242 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 177.25 chr1 57787942 57788187 + 1.25 NA intron (NM_001353980, intron 3 of 5) L1ME1|LINE|L1 -72517 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 290.5-14 chr15 45285679 45286033 + 1.25 NA Intergenic ERVL-int|LTR|ERVL -6634 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 176.25-20 chr14 40976944 40977296 + 1.25 NA intron (NR_109758, intron 3 of 3) AluJo|SINE|Alu 22409 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 229.25-30 chr9 13875500 13875862 + 1.25 NA Intergenic L1MA5|LINE|L1 -52290 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 286-8 chr11 423161 423582 + 1.25 NA intron (NM_001347882, intron 14 of 21) intron (NM_001347882, intron 14 of 21) -5974 NM_021805 59307 Hs.501624 NM_021805 ENSG00000185187 SIGIRR IL-1R8|TIR8 single Ig and TIR domain containing protein-coding 210.25-51 chr9 104891085 104891338 + 1.25 NA intron (NM_005502, intron 2 of 49) intron (NM_005502, intron 2 of 49) 36944 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 146.25-30 chr16 84486782 84486916 + 1.25 NA exon (NM_020947, exon 5 of 8) exon (NM_020947, exon 5 of 8) 17810 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 120.25-5 chr1 212335044 212335191 + 1.25 NA intron (NM_006243, intron 3 of 12) intron (NM_006243, intron 3 of 12) -17701 NR_004389 692157 Hs.707958 NR_004389 ENSG00000201544 SNORA16B U98b small nucleolar RNA, H/ACA box 16B snoRNA 119.25-59 chr20 55146626 55146757 + 1.25 NA Intergenic L1MC5|LINE|L1 -276352 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 120.75-100 chr8 125501312 125501501 + 1.25 NA Intergenic Charlie1|DNA|hAT-Charlie 69197 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 145.75-11 chr14 59925953 59926193 + 1.25 NA intron (NR_075071, intron 1 of 32) THE1C|LTR|ERVL-MaLR 6360 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 148.25-68 chr8 66431725 66431922 + 1.25 NA promoter-TSS (NM_144650) promoter-TSS (NM_144650) -681 NM_144650 137872 Hs.720023 NM_144650 ENSG00000147576 ADHFE1 ADH8|HMFT2263|HOT alcohol dehydrogenase iron containing 1 protein-coding 340.25-3 chr22 34154391 34154814 + 1.25 NA Intergenic L2a|LINE|L2 -231714 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 248.25-37 chrX 22446673 22447015 + 1.25 NA intron (NR_073010, intron 4 of 11) intron (NR_073010, intron 4 of 11) 173931 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 206.75-10 chr14 59399701 59399882 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie 65589 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 285.5-12 chr5 42823219 42823602 + 1.25 NA Intergenic Intergenic -11334 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 188.25-7 chr11 77250497 77250686 + 1.25 NA intron (NM_182833, intron 11 of 16) L1M2a|LINE|L1 51075 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 220.5-23 chr2 5380078 5380437 + 1.25 NA Intergenic L1MEi|LINE|L1 310861 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 125-91 chr7 141776537 141776690 + 1.25 NA Intergenic LTR87|LTR|ERVL? -1876 NM_016944 50832 Hs.735690 NM_016944 ENSG00000127364 TAS2R4 T2R4 taste 2 receptor member 4 protein-coding 212-32 chr3 89619058 89619382 + 1.25 NA Intergenic Intergenic 511599 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 114.75-46 chr2 15197809 15197938 + 1.25 NA intron (NR_052013, intron 47 of 50) intron (NR_052013, intron 47 of 50) 363461 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 184-31 chr3 57782834 57783074 + 1.25 NA intron (NM_001304420, intron 1 of 21) MSTD|LTR|ERVL-MaLR 25698 NM_001304421 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 272-23 chr7 29318923 29319258 + 1.25 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -110120 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 152.5-60 chr20 45748487 45748660 + 1.25 NA Intergenic Intergenic 26226 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 133.75-71 chr7 69840875 69841012 + 1.25 NA intron (NM_015570, intron 1 of 18) L1MC5a|LINE|L1 242468 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 200-31 chr3 189868228 189868426 + 1.25 NA intron (NM_003722, intron 7 of 13) intron (NM_003722, intron 7 of 13) 38405 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 172.5-67 chr6 17540177 17540399 + 1.25 NA intron (NM_006366, intron 8 of 12) intron (NM_006366, intron 8 of 12) -29023 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 139-66 chr8 77018837 77019027 + 1.25 NA Intergenic MLT1H2|LTR|ERVL-MaLR -17888 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 284.25-21 chr6 156994298 156994634 + 1.25 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -41961 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 211.5-7 chr11 108734430 108734752 + 1.25 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 69522 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 128.75-14 chr11 40274017 40274206 + 1.25 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 19019 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 247-16 chr2 31320894 31321209 + 1.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR 86899 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 148.25-3 chr1 114338041 114338248 + 1.25 NA Intergenic Intergenic 173059 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 127.5-108 chr6 53019029 53019154 + 1.25 NA intron (NM_014920, intron 6 of 13) intron (NM_014920, intron 6 of 13) 23471 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 149.75-53 chr5 97123021 97123253 + 1.25 NA intron (NM_153234, intron 2 of 5) intron (NM_153234, intron 2 of 5) 19474 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 238.75-17 chr7 10256249 10256531 + 1.25 NA Intergenic Intergenic -446286 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 119.5-19 chr11 28696256 28696473 + 1.25 NA Intergenic Intergenic -218816 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 214-28 chr3 81064941 81065263 + 1.25 NA intron (NR_132411, intron 1 of 1) L3b|LINE|CR1 71234 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 243.25-18 chr8 16885832 16886214 + 1.25 NA Intergenic Intergenic 116322 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 280-19 chr5 24496956 24497261 + 1.25 NA intron (NM_001317222, intron 8 of 10) intron (NM_001317222, intron 8 of 10) 147870 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 334.25-10 chr6 48519139 48519519 + 1.25 NA Intergenic L1MC5a|LINE|L1 -450640 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 169.5-11 chr10 78253724 78253865 + 1.25 NA Intergenic MER5B|DNA|hAT-Charlie 5169 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 212.5 chr1 3627815 3628030 + 1.25 NA intron (NM_182752, intron 4 of 4) intron (NM_182752, intron 4 of 4) 2907 NM_182752 127262 Hs.20529 NM_182752 ENSG00000158109 TPRG1L FAM79A|h-mover|mover tumor protein p63 regulated 1 like protein-coding 221-45 chr7 44237926 44238111 + 1.25 NA intron (NM_172081, intron 12 of 18) intron (NM_172081, intron 12 of 18) 37040 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 231.5-38 chr5 127799194 127799502 + 1.25 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 95959 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 179.75-10 chr12 30465727 30465991 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 211385 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 203-15 chr18 6691737 6691964 + 1.25 NA Intergenic Intergenic -37866 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 195-49 chr6 62216487 62216669 + 1.25 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 69647 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 260.75-22 chr7 91826399 91826672 + 1.25 NA Intergenic L2a|LINE|L2 54167 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 121.75-88 chr8 52910647 52910792 + 1.25 NA Intergenic Intergenic -29189 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 149.75-54 chr5 110616785 110616987 + 1.25 NA intron (NM_001039763, intron 8 of 13) L1MA7|LINE|L1 -102971 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 186-45 chr6 25064533 25064789 + 1.25 NA Intergenic MER94|DNA|hAT-Blackjack -22373 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 178.75-25 chr18 424267 424418 + 1.25 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 76359 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 213-46 chr8 15040054 15040271 + 1.25 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -186652 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 232.25-8 chr13 84935680 84936077 + 1.25 NA Intergenic L1ME1|LINE|L1 152224 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 223.5-60 chr4 169742221 169742508 + 1.25 NA intron (NM_017867, intron 4 of 7) intron (NM_017867, intron 4 of 7) 15580 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 286.25-14 chr4 168100116 168100421 + 1.25 NA intron (NM_007193, intron 1 of 11) intron (NM_007193, intron 1 of 11) 7731 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 167.75-28 chr17 51216233 51216389 + 1.25 NA intron (NM_017643, intron 6 of 16) intron (NM_017643, intron 6 of 16) 43738 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 118.25-42 chr18 22209916 22210168 + 1.25 NA Intergenic MIR|SINE|MIR 40605 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 181.75-3 chr1 182778021 182778238 + 1.25 NA Intergenic Intergenic -11320 NM_001200052 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 195.5-45 chr2 173134122 173134290 + 1.25 NA intron (NM_133646, intron 2 of 11) AluSz|SINE|Alu 58360 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 225-7 chr11 16595984 16596254 + 1.25 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -119731 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 216.5-5 chr11 5941858 5942043 + 1.25 NA Intergenic Intergenic -5397 NM_001003443 390083 Hs.553741 NM_001003443 ENSG00000184478 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor family 56 subfamily A member 3 protein-coding 176-40 chr6 44798122 44798464 + 1.25 NA Intergenic Intergenic -246412 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 118-35 chr17 78732611 78732818 + 1.25 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) 4188 NM_001365040 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 154-48 chr4 56698756 56698963 + 1.25 NA Intergenic Intergenic -17153 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 161-28 chr16 58929420 58929629 + 1.25 NA Intergenic Intergenic -195208 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 143-15 chr12 17259516 17259702 + 1.25 NA Intergenic L1M5|LINE|L1 270862 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 145-58 chr7 11642296 11642453 + 1.25 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 189824 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 148.75-59 chr6 77967122 77967295 + 1.25 NA Intergenic Intergenic 314169 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 245.25-6 chr11 11674088 11674427 + 1.25 NA Intergenic L1ME4a|LINE|L1 -17535 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 337-13 chr8 87432172 87432636 + 1.25 NA Intergenic L1MEg|LINE|L1 441611 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 265.75-8 chr2 58563503 58563886 + 1.25 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 42941 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 164.75-24 chr14 99833949 99834182 + 1.25 NA intron (NM_004434, intron 1 of 21) intron (NM_004434, intron 1 of 21) 40652 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 268.25-21 chr8 78327859 78328250 + 1.25 NA Intergenic Intergenic -188286 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 197.75-45 chr7 80494793 80495099 + 1.25 NA intron (NM_001102386, intron 1 of 7) L1PB4|LINE|L1 17118 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 119.75-19 chr12 62698799 62698981 + 1.25 NA intron (NM_020700, intron 6 of 9) Plat_L3|LINE|CR1 95204 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 250.75 chr1 9742672 9742982 + 1.25 NA intron (NM_001009566, intron 9 of 18) AluSx|SINE|Alu 51360 NM_001350235 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 199-21 chr2 47866901 47867078 + 1.25 NA intron (NM_001190274, intron 1 of 22) MamRTE1|LINE|RTE-BovB 21730 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 193.25-39 chr6 50543171 50543422 + 1.25 NA Intergenic Intergenic -170248 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 156-10 chr1 248270643 248270875 + 1.25 NA Intergenic L1M5|LINE|L1 3055 NM_001004695 391195 Hs.553783 NM_001004695 ENSG00000177212 OR2T33 OR1-56|OR2T32 olfactory receptor family 2 subfamily T member 33 protein-coding 229.75-16 chr21 21229255 21229582 + 1.25 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 82256 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 142-31 chr2 198373615 198373811 + 1.25 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 1384 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 195.75-26 chr22 49176086 49176398 + 1.25 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 309472 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 194-7 chr11 30224662 30224865 + 1.25 NA Intergenic AluSz6|SINE|Alu -6251 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 320.5-15 chr6 13702575 13702899 + 1.25 NA intron (NM_005493, intron 1 of 13) L2c|LINE|L2 9098 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 121.5-56 chr2 7494690 7494833 + 1.25 NA Intergenic L1M5|LINE|L1 73500 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 157.25-54 chr6 69581313 69581529 + 1.25 NA Intergenic Intergenic 215045 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 122-36 chr2 37336823 37337018 + 1.25 NA Intergenic Intergenic -7710 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 179-21 chr14 72117491 72117789 + 1.25 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 184113 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 179.75-32 chr3 32925163 32925329 + 1.25 NA Intergenic L1ME3G|LINE|L1 -26398 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 289.75-2 chr10 79143866 79144266 + 1.25 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 75100 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 162-39 chr4 85009122 85009313 + 1.25 NA TTS (NR_152771) TTS (NR_152771) 41733 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 303.25-8 chr2 126839837 126840290 + 1.25 NA Intergenic Intergenic -58827 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 233-11 chr11 77659667 77659985 + 1.25 NA Intergenic Intergenic -22020 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 237.25-19 chr3 87505325 87505584 + 1.25 NA Intergenic Intergenic -228870 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 157.5-56 chr2 127629902 127630146 + 1.25 NA intron (NM_001080527, intron 34 of 46) L2c|LINE|L2 -15840 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 231-6 chr10 105110288 105110519 + 1.25 NA intron (NM_014978, intron 7 of 26) L1M7|LINE|L1 -444187 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 250.5-23 chr3 129234168 129234583 + 1.25 NA Intergenic AluSz|SINE|Alu -15231 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 146.75-30 chr3 146329425 146329554 + 1.25 NA Intergenic Intergenic -78310 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 187-9 chr15 63360794 63361034 + 1.25 NA intron (NR_135511, intron 2 of 9) L2c|LINE|L2 20932 NR_135511 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 180.75-58 chr8 54159554 54159736 + 1.25 NA Intergenic L1MB5|LINE|L1 24404 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 228-42 chr7 115308937 115309144 + 1.25 NA Intergenic Intergenic -77685 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 139.5-60 chr3 72968307 72968456 + 1.25 NA intron (NM_001080393, intron 6 of 6) MER113|DNA|hAT-Charlie -28362 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 273-8 chr14 50209512 50209852 + 1.25 NA intron (NM_006939, intron 1 of 22) AluJb|SINE|Alu 21896 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 122.5-6 chr1 207698122 207698254 + 1.25 NA intron (NM_175710, intron 7 of 11) intron (NM_175710, intron 7 of 11) 53055 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 212.25-36 chr6 92531220 92531419 + 1.25 NA Intergenic L1MA6|LINE|L1 -840891 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 217-6 chr13 43323568 43323755 + 1.25 NA intron (NM_001347966, intron 11 of 17) intron (NM_001347966, intron 11 of 17) -125191 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 203.75-25 chr2 223770190 223770382 + 1.25 NA intron (NR_110906, intron 2 of 3) intron (NR_110906, intron 2 of 3) 67296 NM_001039569 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 165.25-21 chr19 58320195 58320339 + 1.25 NA intron (NR_144444, intron 2 of 2) intron (NR_144444, intron 2 of 2) -6727 NM_001321117 342945 Hs.388162 NM_181846 ENSG00000182318 ZSCAN22 HKR2|ZNF50 zinc finger and SCAN domain containing 22 protein-coding 249.75 chr1 25669392 25669791 + 1.25 NA intron (NM_020379, intron 1 of 11) AluJr|SINE|Alu 52123 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 310.25-5 chr15 67837858 67838330 + 1.25 NA intron (NR_120345, intron 1 of 2) intron (NR_120345, intron 1 of 2) 785 NR_120345 101929076 Hs.297340 NR_120345 ENSG00000245719 LOC101929076 - uncharacterized LOC101929076 ncRNA 164.75-5 chr1 200673640 200673913 + 1.25 NA intron (NR_110787, intron 1 of 2) MIRb|SINE|MIR -3778 NM_001349803 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 134-42 chr2 177391894 177392024 + 1.25 NA promoter-TSS (NM_003659) promoter-TSS (NM_003659) 732 NR_026966 100130691 Hs.707723 NM_182585 ENSG00000213963 LOC100130691 - uncharacterized LOC100130691 ncRNA 179.5-3 chr1 30711530 30711818 + 1.25 NA 3' UTR (NM_002379, exon 8 of 8) 3' UTR (NM_002379, exon 8 of 8) -7098 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 219.25-35 chr8 99527009 99527240 + 1.25 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) 9606 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 156.75-48 chr2 153564497 153564718 + 1.25 NA Intergenic Intergenic -85845 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 284-24 chr9 125588100 125588462 + 1.25 NA intron (NM_001006619, intron 4 of 10) L1MB7|LINE|L1 118927 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 219.75-26 chr3 42676880 42677072 + 1.25 NA Intergenic L1MD2|LINE|L1 -8561 NM_152393 131377 Hs.350288 NM_152393 ENSG00000157119 KLHL40 KBTBD5|NEM8|SRYP|SYRP kelch like family member 40 protein-coding 133.75-4 chr1 165683354 165683540 + 1.25 NA intron (NM_001365774, intron 2 of 10) intron (NM_001365774, intron 2 of 10) 15115 NM_001365774 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 300.5-13 chr20 20209369 20209692 + 1.25 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) 152884 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 230.25-25 chr6 35733221 35733443 + 1.25 NA intron (NR_027117, intron 4 of 9) intron (NR_027117, intron 4 of 9) 3615 NR_027117 285847 Hs.407190 NR_027117 LOC285847 - uncharacterized LOC285847 ncRNA 195-44 chr5 55770461 55770676 + 1.25 NA intron (NM_001166534, intron 2 of 14) intron (NM_001166534, intron 2 of 14) 3683 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 187.5-7 chr10 33762518 33762713 + 1.25 NA intron (NR_038932, intron 2 of 2) (TTTTTA)n|Simple_repeat|Simple_repeat 10065 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 134.5-25 chr15 24052945 24053124 + 1.25 NA intron (NR_126392, intron 4 of 5) L1MC3|LINE|L1 77887 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 127-31 chr14 61416400 61416605 + 1.25 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 95059 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 232.5-53 chr9 29327303 29327538 + 1.25 NA Intergenic L1MC5|LINE|L1 -113819 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 223.75-18 chr4 41946461 41946669 + 1.25 NA intron (NM_018126, intron 5 of 6) intron (NM_018126, intron 5 of 6) 11136 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 148.5-69 chr4 24928107 24928238 + 1.25 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) -15194 NM_001330644 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 197.25-49 chr5 93126304 93126481 + 1.25 NA Intergenic Intergenic 444951 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 121-21 chr14 60290513 60290674 + 1.25 NA intron (NM_021003, intron 4 of 5) intron (NM_021003, intron 4 of 5) -32603 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 274-21 chr3 2278887 2279207 + 1.25 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 40218 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 221.25-9 chr14 70392047 70392307 + 1.25 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 24913 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 265.25-3 chr1 118670701 118671102 + 1.25 NA Intergenic L2a|LINE|L2 317442 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 213.25-33 chr5 27286246 27286525 + 1.25 NA Intergenic Intergenic -185907 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 231-15 chr15 77254778 77255018 + 1.25 NA intron (NM_024776, intron 3 of 7) L2a|LINE|L2 -29494 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 226-37 chrX 52259265 52259630 + 1.25 NA Intergenic Intergenic 68825 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 180.75-5 chr1 56995381 56995552 + 1.25 NA 3' UTR (NM_001365792, exon 15 of 15) 3' UTR (NM_001365792, exon 15 of 15) -29326 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 123.25-53 chr22 30359733 30359883 + 1.25 NA intron (NM_001017437, intron 1 of 11) MER33|DNA|hAT-Charlie -2914 NM_005877 10291 Hs.406277 NM_005877 ENSG00000099995 SF3A1 PRP21|PRPF21|SAP114|SF3A120 splicing factor 3a subunit 1 protein-coding 185.75-8 chr10 84450125 84450311 + 1.25 NA intron (NM_018999, intron 6 of 10) intron (NM_018999, intron 6 of 10) 25049 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 181.5-13 chr12 4125425 4125658 + 1.25 NA Intergenic L1M4|LINE|L1 -148221 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 132-78 chr9 14031732 14031938 + 1.25 NA Intergenic Intergenic 103864 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 234.75-34 chr4 93914828 93915072 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR 86197 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 239-18 chr19 32020747 32020994 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR -4992 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 259-32 chr8 138492170 138492515 + 1.25 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 4919 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 253.25-26 chr5 113803099 113803642 + 1.25 NA Intergenic Intergenic 289676 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 416.25 chr14 48332411 48332980 + 1.25 NA Intergenic Intergenic -537681 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 148.75-60 chr6 86699063 86699271 + 1.25 NA Intergenic L1MDa|LINE|L1 -238361 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 115.75-24 chr15 45579968 45580196 + 1.25 NA Intergenic Intergenic -7041 NR_132355 26258 Hs.7037 NM_012388 ENSG00000104164 BLOC1S6 BLOS6|HPS9|PA|PALLID|PLDN biogenesis of lysosomal organelles complex 1 subunit 6 protein-coding 207.75-27 chr22 49668655 49669020 + 1.25 NA Intergenic Intergenic -11318 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 209.5-51 chr8 123026834 123027137 + 1.25 NA intron (NM_001330601, intron 1 of 6) L1MB8|LINE|L1 -1213 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 265-3 chr12 14833833 14834098 + 1.25 NA intron (NM_021071, intron 2 of 2) intron (NM_021071, intron 2 of 2) 9561 NM_001354646 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 302-9 chr17 60370022 60370439 + 1.25 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 21903 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 253.5-37 chr5 174965192 174965460 + 1.25 NA intron (NR_046113, intron 2 of 2) L1PA15|LINE|L1 30405 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 152.75-5 chr10 91835645 91835845 + 1.25 NA intron (NM_025235, intron 12 of 26) AluSq2|SINE|Alu 37319 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 201.25-45 chrX 71218402 71218716 + 1.25 NA intron (NM_001097642, intron 1 of 1) AluSz6|SINE|Alu 3347 NM_001097642 2705 Hs.333303 NM_000166 ENSG00000169562 GJB1 CMTX|CMTX1|CX32 gap junction protein beta 1 protein-coding 415.5-3 chr18 42961288 42961728 + 1.25 NA intron (NM_001272077, intron 3 of 5) intron (NM_001272077, intron 3 of 5) 154177 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 257.75-9 chr16 4969333 4969670 + 1.25 NA intron (NM_014692, intron 2 of 15) AluSx1|SINE|Alu 11171 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 126-45 chr2 69686636 69686755 + 1.25 NA intron (NM_001320698, intron 2 of 14) AluJr|SINE|Alu 42887 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 267-7 chr13 101464434 101464677 + 1.25 NA intron (NM_001271755, intron 2 of 9) (TA)n|Simple_repeat|Simple_repeat 11880 NM_004791 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 142.75-39 chr2 46862623 46862785 + 1.25 NA Intergenic Intergenic 34840 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 207-36 chr3 70463993 70464295 + 1.25 NA Intergenic Intergenic -151506 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 177.25-37 chr4 107831481 107831798 + 1.25 NA intron (NM_001136258, intron 1 of 6) intron (NM_001136258, intron 1 of 6) 7074 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 203.5-9 chr11 81585720 81586058 + 1.25 NA Intergenic Intergenic 304947 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 168.5-59 chr5 13088636 13088834 + 1.25 NA Intergenic Intergenic -55849 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 212.25-37 chr7 3408088 3408278 + 1.25 NA intron (NM_152744, intron 1 of 44) AluSz|SINE|Alu 106931 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 235.25-31 chr8 117075511 117075734 + 1.25 NA intron (NM_001172815, intron 2 of 10) LTR106_Mam|LTR|LTR -59373 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 174-50 chr7 1723950 1724102 + 1.25 NA intron (NM_001128636, intron 2 of 2) MIR|SINE|MIR 18284 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 173.75-9 chr10 66885043 66885376 + 1.25 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -40827 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 140.25-5 chr10 29897014 29897206 + 1.25 NA Intergenic Intergenic -160174 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 177-65 chr9 29646861 29647166 + 1.25 NA Intergenic L1MC4|LINE|L1 -433412 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 116.75-16 chr12 30884195 30884348 + 1.25 NA Intergenic L1MEg|LINE|L1 -42477 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 210.5-14 chr12 67917635 67917826 + 1.25 NA Intergenic MER47A|DNA|TcMar-Tigger -11505 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 291 chr1 69942787 69943025 + 1.25 NA intron (NM_001370785, intron 8 of 26) MER30|DNA|hAT-Charlie 23584 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 140-56 chr6 20114944 20115131 + 1.25 NA intron (NR_073465, intron 7 of 9) MIR|SINE|MIR 97432 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 114-31 chr14 33609498 33609658 + 1.25 NA intron (NM_001165893, intron 4 of 10) MER133A|DNA?|DNA? -99359 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 127-60 chr3 58216945 58217091 + 1.25 NA Intergenic Intergenic -6015 NM_001256560 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 149.25-34 chr2 146760296 146760491 + 1.25 NA Intergenic L1M5|LINE|L1 173336 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 139.25-40 chr16 58535666 58535813 + 1.25 NA intron (NR_049763, intron 39 of 49) AluY|SINE|Alu 12894 NR_002978 677827 Hs.688592 NR_002978 ENSG00000207493 SNORA46 ACA46 small nucleolar RNA, H/ACA box 46 snoRNA 237.25-23 chr5 55818578 55818816 + 1.25 NA Intergenic Intergenic -32660 NM_139017 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 119-46 chr2 235965655 235965769 + 1.25 NA intron (NM_001037131, intron 12 of 17) MIR|SINE|MIR 202674 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 179.5-40 chr15 63605011 63605360 + 1.25 NA Intergenic Intergenic -4358 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 177.5-52 chr5 24876441 24876669 + 1.25 NA Intergenic L1M5|LINE|L1 -35972 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 210.75-15 chr17 51087449 51087750 + 1.25 NA intron (NM_001130527, intron 1 of 29) intron (NM_001130527, intron 1 of 29) 33269 NM_003971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 189.25-30 chr3 123599576 123599752 + 1.25 NA intron (NR_121654, intron 2 of 3) Charlie1|DNA|hAT-Charlie 14151 NR_121654 100506826 Hs.556600 NR_038266 ENSG00000239523 MYLK-AS1 - MYLK antisense RNA 1 ncRNA 349-4 chr15 53954862 53955157 + 1.25 NA Intergenic Intergenic -23432 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 135.25-13 chr10 72723635 72723757 + 1.25 NA intron (NR_073062, intron 3 of 9) L1ME4c|LINE|L1 2667 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 132-12 chr10 35421025 35421189 + 1.25 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 84233 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 182.25-20 chr2 70574811 70575047 + 1.25 NA Intergenic MER44A|DNA|TcMar-Tigger -21103 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 243.5-32 chr9 26742116 26742485 + 1.25 NA Intergenic Intergenic 150502 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 296.25-5 chr2 103943535 103944036 + 1.25 NA Intergenic L1MDa|LINE|L1 464547 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 142.75-48 chr20 52637782 52637925 + 1.25 NA intron (NR_110038, intron 2 of 2) MER46C|DNA|TcMar-Tigger 17015 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 272.25-2 chr1 67750163 67750425 + 1.25 NA intron (NM_018841, intron 2 of 3) intron (NM_018841, intron 2 of 3) 65093 NM_001199742 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 130.25-29 chr14 77190037 77190305 + 1.25 NA intron (NM_020431, intron 1 of 23) L1M5|LINE|L1 8373 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 166-52 chr6 157843612 157843839 + 1.25 NA intron (NM_016224, intron 1 of 17) Tigger13a|DNA|TcMar-Tigger 20479 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 244-2 chr1 221055357 221055616 + 1.25 NA Intergenic Intergenic -175346 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 162.75-37 chr2 106836195 106836429 + 1.25 NA intron (NR_136313, intron 1 of 4) Charlie1a|DNA|hAT-Charlie 49716 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 230-32 chr8 116280993 116281254 + 1.25 NA intron (NR_046215, intron 1 of 13) MER121|DNA|hAT? 43936 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 159-20 chr13 108124792 108124938 + 1.25 NA Intergenic Intergenic 89917 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 198.25-18 chr17 74244648 74245004 + 1.25 NA intron (NM_001330453, intron 6 of 13) L2c|LINE|L2 -3540 NM_052869 94015 Hs.27935 NM_032646 ENSG00000141540 TTYH2 C17orf29 tweety family member 2 protein-coding 190.75-49 chr6 63786946 63787178 + 1.25 NA intron (NM_001292009, intron 39 of 43) intron (NM_001292009, intron 39 of 43) -19774 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 127.5-74 chr3 17883688 17883795 + 1.25 NA Intergenic Intergenic -78811 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 182-27 chr20 7644863 7645115 + 1.25 NA Intergenic Intergenic 273381 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 117.75-71 chr6 17355698 17355847 + 1.25 NA Intergenic L1MA4|LINE|L1 -37733 NM_001363534 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 155-59 chr7 113457619 113457757 + 1.25 NA Intergenic L1MC1|LINE|L1 -339106 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 190.75-16 chr11 123363486 123363824 + 1.25 NA intron (NM_001367419, intron 1 of 20) intron (NM_001367419, intron 1 of 20) 5119 NM_001367421 57476 Hs.144725 NM_020716 ENSG00000023171 GRAMD1B LINC01059 GRAM domain containing 1B protein-coding 143.25-66 chr5 173266669 173266906 + 1.25 NA Intergenic FRAM|SINE|Alu -31581 NM_001166175 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 241-8 chr11 57105424 57105735 + 1.25 NA Intergenic Intergenic 68045 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 142.5-21 chr12 74041169 74041416 + 1.25 NA Intergenic L1MDa|LINE|L1 251339 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 132.25-27 chr12 131218028 131218209 + 1.25 NA Intergenic Intergenic 53107 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 140.25-51 chr3 26704807 26704957 + 1.25 NA intron (NM_001317811, intron 2 of 2) intron (NM_001317811, intron 2 of 2) 10325 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 135-78 chr9 31784360 31784505 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR -402942 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 139.5-70 chr4 126097062 126097197 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 589870 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 136.75-84 chr6 41065248 41065394 + 1.25 NA TTS (NM_006789) TTS (NM_006789) 6519 NM_001329688 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 173.25-64 chr7 113613171 113613377 + 1.25 NA Intergenic Intergenic 305735 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 124.5-38 chr16 72657495 72657664 + 1.25 NA intron (NR_159372, intron 1 of 7) L1MB2|LINE|L1 7391 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 235.75-23 chr5 111038858 111039063 + 1.25 NA Intergenic Intergenic -31120 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 290.25-12 chr2 104177974 104178262 + 1.25 NA Intergenic L1M1|LINE|L1 230214 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 143.75-53 chr20 18468991 18469164 + 1.25 NA intron (NM_001282526, intron 2 of 8) intron (NM_001282526, intron 2 of 8) -1538 NR_036160 100422875 NR_036160 ENSG00000265137 MIR3192 mir-3192 microRNA 3192 ncRNA 201-20 chr14 70794421 70794713 + 1.25 NA intron (NM_033141, intron 2 of 12) intron (NM_033141, intron 2 of 12) -11115 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 177-13 chr13 112166164 112166387 + 1.25 NA Intergenic Intergenic -5565 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 271-17 chr3 30632626 30632849 + 1.25 NA intron (NM_001024847, intron 2 of 7) intron (NM_001024847, intron 2 of 7) 26136 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 131.5-78 chr5 156938962 156939135 + 1.25 NA intron (NM_001146726, intron 4 of 7) intron (NM_001146726, intron 4 of 7) 24178 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 191-28 chr2 174700702 174700930 + 1.25 NA Intergenic Intergenic -17917 NM_001077269 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 247.5-27 chr5 11039006 11039408 + 1.25 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -277973 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 199.75-28 chr3 193091466 193091665 + 1.25 NA Intergenic L1MA3|LINE|L1 -149657 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 208.25-4 chr1 157286539 157286836 + 1.25 NA Intergenic Intergenic -148096 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 121.75-11 chr11 38961369 38961494 + 1.25 NA Intergenic Intergenic 312573 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 323.25-10 chr4 64055863 64056231 + 1.25 NA Intergenic L1PA16|LINE|L1 353403 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 179.5-24 chr12 19846354 19846571 + 1.25 NA Intergenic Intergenic -168223 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 172.25-16 chr13 53234696 53234897 + 1.25 NA Intergenic LTR67B|LTR|ERVL -82896 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 370.75-2 chr7 27408353 27408866 + 1.25 NA Intergenic Intergenic -161380 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 180.5-15 chr11 42508604 42508765 + 1.25 NA Intergenic Tigger2a|DNA|TcMar-Tigger -254994 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 121.5-117 chrX 118918179 118918291 + 1.25 NA Intergenic Tigger20a|DNA|TcMar-Tigger -56379 NR_110311 79836 Hs.144266 NM_024778 ENSG00000175556 LONRF3 RNF127 LON peptidase N-terminal domain and ring finger 3 protein-coding 154.75-48 chr4 155755262 155755424 + 1.25 NA Intergenic Intergenic -3678 NM_001291955 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 273.75-6 chr13 98716563 98716910 + 1.25 NA intron (NM_005073, intron 8 of 22) intron (NM_005073, intron 8 of 22) 35936 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 246.5-14 chr4 96843384 96843647 + 1.25 NA Intergenic L3b|LINE|CR1 -523411 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 190.5-42 chr21 30372296 30372632 + 1.25 NA promoter-TSS (NM_181621) promoter-TSS (NM_181621) -193 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 233.75-26 chr5 173222795 173223068 + 1.25 NA Intergenic L1ME3D|LINE|L1 12275 NM_001166176 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 285.75 chr1 3232718 3233031 + 1.25 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 104899 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 171.25-39 chr4 62878400 62878629 + 1.25 NA Intergenic Intergenic -716749 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 283.25-17 chr8 141137809 141138103 + 1.25 NA intron (NM_001362798, intron 2 of 21) intron (NM_001362798, intron 2 of 21) 9367 NM_001352891 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 131.5-35 chr19 265643 265773 + 1.25 NA Intergenic L1MC3|LINE|L1 25431 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 288.25-11 chr20 2022043 2022403 + 1.25 NA Intergenic Intergenic -27938 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 204.5-31 chr2 141594384 141594653 + 1.25 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 537183 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 142.25-57 chr5 95737615 95737763 + 1.25 NA intron (NM_014899, intron 3 of 11) intron (NM_014899, intron 3 of 11) -5587 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 123.5-110 chr8 103219946 103220157 + 1.25 NA intron (NM_001364874, intron 3 of 3) MIRb|SINE|MIR -47911 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 175.5-66 chr6 54267219 54267494 + 1.25 NA Intergenic MIR|SINE|MIR -41085 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 153-28 chr3 11236057 11236293 + 1.25 NA intron (NM_001098211, intron 1 of 1) AluSx1|SINE|Alu 10194 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 195.25-7 chr10 63823950 63824161 + 1.25 NA Intergenic L1MA9|LINE|L1 -302165 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 141.5-104 chr6 161301536 161301717 + 1.25 NA Intergenic MER4E1|LTR|ERV1 -27565 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 133.75-47 chr2 166520062 166520243 + 1.25 NA Intergenic Intergenic -33181 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 204.5-57 chr7 23907638 23907892 + 1.25 NA Intergenic Intergenic 197546 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 191.25-22 chr14 67617529 67617783 + 1.25 NA Intergenic Intergenic -2264 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 204-29 chr4 30310279 30310596 + 1.25 NA Intergenic Intergenic -409932 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 135.5-74 chr3 77432058 77432205 + 1.25 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 334119 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 171.75-24 chr18 48426789 48427038 + 1.25 NA Intergenic Intergenic -14328 NM_001371287 236-20 chr18 49933614 49934028 + 1.25 NA intron (NM_001080467, intron 16 of 39) intron (NM_001080467, intron 16 of 39) 119798 NR_117096 103091864 Hs.646459 NR_117096 ENSG00000267322 SNHG22 SCARNA17|SCARNA17HG small nucleolar RNA host gene 22 ncRNA 115.25-4 chr1 74790491 74790619 + 1.25 NA Intergenic Intergenic -57147 NM_001130043 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 128.75-9 chr10 79952321 79952645 + 1.25 NA Intergenic Intergenic -3378 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 123-31 chr2 224307611 224307772 + 1.25 NA Intergenic Tigger5|DNA|TcMar-Tigger 94303 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 201.5-11 chr11 113154434 113154647 + 1.25 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 119361 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 138-33 chr2 54459111 54459306 + 1.25 NA intron (NM_003128, intron 1 of 35) intron (NM_003128, intron 1 of 35) 2881 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 190.75-52 chr8 74802018 74802251 + 1.25 NA Intergenic Intergenic -22400 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 148.75-39 chr2 203497052 203497282 + 1.25 NA intron (NM_001329728, intron 1 of 15) MLT1A1|LTR|ERVL-MaLR 38134 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 319.5-4 chr15 82934188 82934472 + 1.25 NA intron (NM_004839, intron 1 of 8) L2a|LINE|L2 18390 NM_004839 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 192.25-22 chr2 169897496 169897715 + 1.25 NA intron (NM_172070, intron 8 of 38) AluSz6|SINE|Alu 70097 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 135.5-73 chr3 59485158 59485338 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 173249 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 126.5-57 chr2 220536417 220536529 + 1.25 NA Intergenic Intergenic -629908 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 208.25-28 chr4 98337838 98338145 + 1.25 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 76607 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 246-5 chr10 84755764 84755963 + 1.25 NA Intergenic Intergenic 330694 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 165.75-64 chr7 3538059 3538311 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 236933 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 247.25-25 chr4 86749918 86750149 + 1.25 NA intron (NM_080684, intron 17 of 44) intron (NM_080684, intron 17 of 44) 99351 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 276-11 chr2 86360502 86360764 + 1.25 NA Intergenic Intergenic -22550 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 165.25-40 chr3 108146622 108146891 + 1.25 NA Intergenic LTR16C|LTR|ERVL 20935 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 175.5-46 chr2 189253295 189253497 + 1.25 NA Intergenic MIR|SINE|MIR -73635 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 114-6 chr1 114223059 114223338 + 1.25 NA Intergenic Intergenic -69329 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 197.75-12 chr14 58879035 58879222 + 1.25 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 50840 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 201-4 chr10 21363321 21363567 + 1.25 NA intron (NR_155751, intron 3 of 4) intron (NR_155751, intron 3 of 4) 9506 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 150-47 chr21 36684670 36684877 + 1.25 NA Intergenic Intergenic -14342 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 299.75-4 chr15 50449107 50449579 + 1.25 NA intron (NM_001128610, intron 3 of 19) intron (NM_001128610, intron 3 of 19) 24938 NM_001128610 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|PITA4|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 257.5-21 chr4 167188347 167188694 + 1.25 NA intron (NM_001204352, intron 2 of 11) L1MCc|LINE|L1 45906 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 135.75-29 chr14 41979586 41979708 + 1.25 NA Intergenic Intergenic 372791 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 158.5-41 chr16 35323033 35323199 + 1.25 NA Intergenic L1MEf|LINE|L1 -40300 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 235.75 chr1 37513431 37513742 + 1.25 NA intron (NR_073090, intron 1 of 8) intron (NR_073090, intron 1 of 8) 1180 NR_073092 64769 Hs.17118 NM_022756 ENSG00000163875 MEAF6 C1orf149|CENP-28|EAF6|NY-SAR-91 MYST/Esa1 associated factor 6 protein-coding 135-13 chr10 101463453 101463621 + 1.25 NA intron (NM_003939, intron 2 of 13) intron (NM_003939, intron 2 of 13) 109372 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 141.25-73 chr8 124461983 124462297 + 1.25 NA TTS (NR_108047) TTS (NR_108047) 11320 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 203-17 chr2 17474699 17474874 + 1.25 NA Intergenic L1MB7|LINE|L1 43654 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 255-16 chr2 175243148 175243456 + 1.25 NA Intergenic Intergenic -61592 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 153.5-14 chr10 87700771 87700963 + 1.25 NA intron (NM_001015880, intron 1 of 12) intron (NM_001015880, intron 1 of 12) 40989 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 162-28 chr21 27109383 27109594 + 1.25 NA Intergenic Intergenic -142400 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 143.5 chr1 8017397 8017626 + 1.25 NA intron (NM_018948, intron 1 of 3) intron (NM_018948, intron 1 of 3) 8798 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 173.5 chr1 12238276 12238476 + 1.25 NA intron (NM_015378, intron 2 of 69) AluJo|SINE|Alu 8346 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 151.25-45 chr5 87908846 87909065 + 1.25 NA Intergenic Intergenic 246913 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 150.5-90 chr8 47917386 47917581 + 1.25 NA intron (NM_001081640, intron 22 of 84) intron (NM_001081640, intron 22 of 84) 42653 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 255-10 chr15 62601621 62601961 + 1.25 NA Intergenic L1MC5|LINE|L1 43390 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 161-37 chr2 36815622 36815842 + 1.25 NA TTS (NM_001177970) TTS (NM_001177970) 119025 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 180.75-57 chr7 47592065 47592354 + 1.25 NA Intergenic Intergenic -10098 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 171.75-47 chr6 15708231 15708474 + 1.25 NA Intergenic Intergenic -45294 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 159.75-18 chr14 70975434 70975646 + 1.25 NA intron (NM_014982, intron 5 of 35) intron (NM_014982, intron 5 of 35) 68081 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 153.5-29 chr14 34183402 34183568 + 1.25 NA Intergenic Intergenic -232411 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 174-24 chr18 21517231 21517477 + 1.25 NA intron (NM_001142966, intron 30 of 32) intron (NM_001142966, intron 30 of 32) 83350 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 151.25-23 chr15 79640440 79640622 + 1.25 NA Intergenic Intergenic 208015 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 225.25-7 chr18 4104998 4105248 + 1.25 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 142770 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 154-67 chrX 38389309 38389476 + 1.25 NA intron (NM_000531, intron 4 of 9) intron (NM_000531, intron 4 of 9) 36788 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 261.75-3 chr1 208966867 208967241 + 1.25 NA Intergenic L2a|LINE|L2 -5400 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 187.5-16 chr12 55788002 55788244 + 1.25 NA intron (NM_033082, intron 9 of 10) intron (NM_033082, intron 9 of 10) 29601 NM_033082 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 226.25-12 chr17 32816610 32816887 + 1.25 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 60376 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 167.25-43 chr22 26595710 26595990 + 1.25 NA Intergenic AluJo|SINE|Alu -5718 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 242.75-4 chr11 12407859 12408093 + 1.25 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 30405 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 320-7 chr18 75600320 75600615 + 1.25 NA Intergenic Intergenic 111936 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 215.75-28 chr8 116323018 116323289 + 1.25 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 1906 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 222-23 chr2 175834936 175835399 + 1.25 NA Intergenic Intergenic 167100 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 162.5-90 chr8 79491426 79491632 + 1.25 NA Intergenic Intergenic -119588 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 167.5-59 chr4 15639562 15639779 + 1.25 NA intron (NR_036464, intron 4 of 11) intron (NR_036464, intron 4 of 11) 15687 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 185.25-3 chr1 173576823 173577021 + 1.25 NA intron (NM_178527, intron 7 of 27) MER58B|DNA|hAT-Charlie 26150 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 305-12 chr2 66657964 66658388 + 1.25 NA intron (NR_110156, intron 1 of 5) L1PA13|LINE|L1 45051 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 160-2 chr1 110177586 110177814 + 1.25 NA intron (NM_001010898, intron 6 of 11) intron (NM_001010898, intron 6 of 11) 27206 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 176-37 chr5 120305886 120306261 + 1.25 NA Intergenic Intergenic -158205 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 258-7 chr10 93377249 93377679 + 1.25 NA intron (NM_013451, intron 21 of 53) intron (NM_013451, intron 21 of 53) 104870 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 206.75-13 chr14 91493919 91494105 + 1.25 NA intron (NM_001284281, intron 1 of 12) AluSp|SINE|Alu 15692 NM_001366432 55671 Hs.533887 NM_017936 ENSG00000100796 PPP4R3A FLFL1|KIAA2010|MSTP033|PP4R3|PP4R3A|SMEK1|smk-1|smk1 protein phosphatase 4 regulatory subunit 3A protein-coding 122.5-23 chr13 49583159 49583326 + 1.25 NA intron (NR_148016, intron 1 of 13) intron (NR_148016, intron 1 of 13) 2316 NM_001352506 55213 Hs.508021 NM_018191 ENSG00000136144 RCBTB1 CLLD7|CLLL7|GLP|RDEOA RCC1 and BTB domain containing protein 1 protein-coding 204.75-12 chr14 50239874 50240219 + 1.25 NA Intergenic AluJr|SINE|Alu -8468 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 219-26 chr4 87430514 87430798 + 1.25 NA intron (NM_024047, intron 1 of 7) L1M3|LINE|L1 8059 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 199-10 chr11 35608839 35609147 + 1.25 NA Intergenic Intergenic -9467 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 145.5-9 chr10 10039480 10039614 + 1.25 NA Intergenic Intergenic -19175 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 196.25-62 chr7 78468147 78468418 + 1.25 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 121040 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 196.5-18 chr11 34196456 34196750 + 1.25 NA intron (NM_145804, intron 3 of 16) MER91A|DNA|hAT-Tip100 90974 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 347.5-9 chr16 76536595 76536917 + 1.25 NA intron (NR_136213, intron 18 of 23) intron (NR_136213, intron 18 of 23) -98242 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 235.5-22 chr17 58807759 58808123 + 1.25 NA intron (NM_014906, intron 1 of 6) L1M5|LINE|L1 52072 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 185.25-47 chr6 138383838 138384090 + 1.25 NA TTS (NM_001368163) TTS (NM_001368163) 6321 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 206.25-8 chr11 48243498 48243690 + 1.25 NA Intergenic Intergenic -1510 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 159.25-41 chr20 59038302 59038537 + 1.25 NA intron (NR_037929, intron 2 of 7) intron (NR_037929, intron 2 of 7) 4367 NM_016045 51012 Hs.656865 NM_016045 ENSG00000101166 PRELID3B C20orf45|SLMO2|dJ543J19.5 PRELI domain containing 3B protein-coding 186.5-24 chr16 11865718 11865938 + 1.25 NA Intergenic Intergenic -14286 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 160.25-35 chr2 135265477 135265655 + 1.25 NA exon (NM_032143, exon 12 of 21) exon (NM_032143, exon 12 of 21) 128938 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 180.75-63 chr9 87340537 87340757 + 1.25 NA Intergenic Intergenic -156581 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 135.5-66 chr21 14358111 14358324 + 1.25 NA Intergenic L1ME4a|LINE|L1 24929 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 122-47 chr3 75908299 75908505 + 1.25 NA Intergenic MIR|SINE|MIR -122853 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 210.25-43 chr7 2949774 2950005 + 1.25 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93978 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 155.75 chr1 22504861 22505260 + 1.25 NA intron (NM_001083621, intron 6 of 18) intron (NM_001083621, intron 6 of 18) 53209 NM_014870 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 157.75-45 chr2 223087489 223087682 + 1.25 NA Intergenic Charlie17|DNA|hAT-Charlie 35655 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 322.25-4 chr13 95642143 95642449 + 1.25 NA intron (NM_014934, intron 3 of 21) CpG-6772 2410 NM_198968 22873 Hs.656580 NM_014934 ENSG00000134874 DZIP1 DZIP|DZIPt1 DAZ interacting zinc finger protein 1 protein-coding 130.5-37 chr14 79316843 79317009 + 1.25 NA intron (NM_001105250, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 37546 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 196.25 chr1 28117777 28117972 + 1.25 NA Intergenic L2b|LINE|L2 -29237 NM_001282561 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 117-18 chr12 7565763 7565946 + 1.25 NA Intergenic L1PA8A|LINE|L1 -62036 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 161-60 chr7 44702158 44702310 + 1.25 NA intron (NM_002541, intron 20 of 22) intron (NM_002541, intron 20 of 22) -46332 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 185.25-7 chr1 199843912 199844220 + 1.25 NA Intergenic MIRb|SINE|MIR -183644 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 249-43 chr8 104371715 104372020 + 1.25 NA Intergenic L2c|LINE|L2 32041 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 148.75-2 chr10 56939478 56939635 + 1.25 NA Intergenic Intergenic 365003 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 254.5-6 chr11 23290243 23290559 + 1.25 NA Intergenic MIR|SINE|MIR 128789 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 162.5-94 chr8 125058659 125058833 + 1.25 NA intron (NM_014846, intron 14 of 28) intron (NM_014846, intron 14 of 28) 33046 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 164.75-58 chr5 74000186 74000339 + 1.25 NA Intergenic L1ME4a|LINE|L1 186716 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 113.5-83 chr3 189594091 189594212 + 1.25 NA Intergenic L1MA9|LINE|L1 -2595 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 131.5-88 chr7 108601211 108601371 + 1.25 NA Intergenic LTR82B|LTR|ERVL 31417 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 380.75-5 chr5 87462871 87463378 + 1.25 NA Intergenic L1MA4A|LINE|L1 -50091 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 245-25 chr4 43560310 43560640 + 1.25 NA Intergenic MER66D|LTR|ERV1 -67932 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 197.75-46 chr7 107618427 107618653 + 1.25 NA exon (NM_001371356, exon 7 of 7) exon (NM_001371356, exon 7 of 7) 38294 NM_001371356 282.25-17 chrX 53667084 53667411 + 1.25 NA intron (NM_031407, intron 3 of 83) intron (NM_031407, intron 3 of 83) 19472 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 137-8 chr1 236893580 236893754 + 1.25 NA intron (NM_000254, intron 29 of 32) intron (NM_000254, intron 29 of 32) 98375 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 117.25-11 chr10 34363096 34363308 + 1.25 NA intron (NM_001184789, intron 11 of 22) intron (NM_001184789, intron 11 of 22) 452094 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 152.75-23 chr17 59074047 59074263 + 1.25 NA intron (NR_148346, intron 8 of 23) Tigger3b|DNA|TcMar-Tigger 32725 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 291-11 chr3 67169612 67170020 + 1.25 NA Intergenic MIRb|SINE|MIR -55648 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 290.75-4 chr18 13993980 13994384 + 1.25 NA Intergenic L1MB4|LINE|L1 -78475 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 233-21 chr4 45597075 45597523 + 1.25 NA Intergenic Intergenic 526755 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 357.75 chr1 189631893 189632287 + 1.25 NA Intergenic L1MB2|LINE|L1 843920 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 125.5-104 chr5 39949207 39949382 + 1.25 NA Intergenic Intergenic -102997 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 181.75-31 chr4 37012758 37012976 + 1.25 NA intron (NR_134669, intron 1 of 1) L1ME1|LINE|L1 11088 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 117.75-49 chr22 35068967 35069116 + 1.25 NA intron (NM_001303508, intron 2 of 4) intron (NM_001303508, intron 2 of 4) 2883 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 152.5-18 chr10 72491663 72491881 + 1.25 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 32214 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 151.5-40 chr2 166819038 166819198 + 1.25 NA Intergenic Intergenic -69369 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 184.5-82 chr8 140673643 140673845 + 1.25 NA intron (NR_148037, intron 31 of 34) intron (NR_148037, intron 31 of 34) -38111 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 162-58 chr7 87518469 87518618 + 1.25 NA intron (NM_001348944, intron 25 of 29) intron (NM_001348944, intron 25 of 29) -42840 NM_018850 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 182.25-25 chr2 184532162 184532411 + 1.25 NA Intergenic Intergenic -66243 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 139.25-50 chr2 224423743 224423891 + 1.25 NA Intergenic L1MA5|LINE|L1 -21710 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 176.5-64 chr4 33338567 33338726 + 1.25 NA Intergenic L1PB4|LINE|L1 701247 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 136.5-39 chr15 64987132 64987321 + 1.25 NA intron (NM_001127890, intron 1 of 7) intron (NM_001127890, intron 1 of 7) 2244 NM_001127889 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 229.25-28 chr8 83747179 83747449 + 1.25 NA Intergenic MER2B|DNA|TcMar-Tigger 343556 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 201.5-8 chr10 45073778 45074015 + 1.25 NA Intergenic AluSx|SINE|Alu 72973 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 269-7 chr15 71945527 71945899 + 1.25 NA intron (NM_006901, intron 15 of 41) L1ME1|LINE|L1 135159 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 226.25-18 chr2 104745015 104745268 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR 12578 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 208.75-24 chr5 78281555 78281908 + 1.25 NA intron (NM_003664, intron 1 of 26) intron (NM_003664, intron 1 of 26) 12967 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 186-47 chr6 134618452 134618770 + 1.25 NA Intergenic MER5A1|DNA|hAT-Charlie -78606 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 219.25-10 chr12 132577310 132577616 + 1.25 NA intron (NM_001142641, intron 13 of 16) intron (NM_001142641, intron 13 of 16) -4534 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 129.5-14 chr10 121589424 121589738 + 1.25 NA intron (NM_001320658, intron 2 of 17) intron (NM_001320658, intron 2 of 17) 4386 NM_001144913 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 240.25-3 chr11 93219684 93219966 + 1.25 NA Intergenic Intergenic -21834 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 116.5-39 chr15 67648226 67648346 + 1.25 NA intron (NM_001206804, intron 11 of 21) L1MB7|LINE|L1 99192 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 138.25-12 chr10 89892014 89892230 + 1.25 NA intron (NR_149079, intron 1 of 1) intron (NR_149079, intron 1 of 1) 3988 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 158.75-63 chr6 51042977 51043175 + 1.25 NA Intergenic LTR33|LTR|ERVL 224205 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 162.75-44 chr3 98558667 98558893 + 1.25 NA Intergenic Intergenic 26802 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 112.75-17 chr10 102911100 102911285 + 1.25 NA intron (NR_160733, intron 1 of 2) intron (NR_160733, intron 1 of 2) -7102 NM_199076 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 274.5-20 chr3 100814293 100814525 + 1.25 NA intron (NM_001349330, intron 38 of 61) intron (NM_001349330, intron 38 of 61) 104867 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 156.5-74 chr7 50260932 50261097 + 1.25 NA Intergenic L2c|LINE|L2 -43050 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 284.25-12 chr2 28031825 28032204 + 1.25 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 35647 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 172.5-79 chr7 50049605 50049810 + 1.25 NA intron (NM_001159878, intron 4 of 7) L1PA10|LINE|L1 43539 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 237.75-27 chr2 202729779 202730064 + 1.25 NA intron (NM_173511, intron 4 of 7) L2c|LINE|L2 94952 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 188.5-7 chr11 9142067 9142277 + 1.25 NA intron (NR_145966, intron 20 of 21) intron (NR_145966, intron 20 of 21) 47809 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 133.25-19 chr12 9032828 9032996 + 1.25 NA Intergenic LTR8B|LTR|ERV1 32158 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 171.5-68 chr5 39502966 39503147 + 1.25 NA Intergenic Intergenic -17375 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 215-19 chr14 88282111 88282430 + 1.25 NA intron (NM_021161, intron 1 of 6) MIR|SINE|MIR -11359 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 215.5-2 chr1 189110817 189111000 + 1.25 NA Intergenic MER1B|DNA|hAT-Charlie 1365102 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 191.75-13 chr14 102211456 102211714 + 1.25 NA intron (NM_001353658, intron 4 of 4) intron (NM_001353658, intron 4 of 4) 23841 NM_001353832 5891 Hs.36859 NM_014226 ENSG00000080823 MOK RAGE|RAGE-1|RAGE1|STK30 MOK protein kinase protein-coding 142.75-46 chr2 135765430 135765586 + 1.25 NA intron (NM_014607, intron 6 of 12) AluSq2|SINE|Alu -22864 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 160-11 chr13 60724379 60724614 + 1.25 NA Intergenic Intergenic 51541 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 169-55 chr8 131352184 131352447 + 1.25 NA Intergenic Intergenic -311406 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 254.75-16 chr22 49690234 49690566 + 1.25 NA Intergenic L1MD3|LINE|L1 -32881 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 239.5-11 chr16 89566409 89566777 + 1.25 NA 3' UTR (NM_000977, exon 6 of 6) 3' UTR (NM_000977, exon 6 of 6) 5163 NR_002450 606500 NR_002450 SNORD68 HBII-202 small nucleolar RNA, C/D box 68 snoRNA 280.75-9 chr3 951602 952017 + 1.25 NA Intergenic L2b|LINE|L2 -141215 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 141.5-18 chr10 114597412 114597525 + 1.25 NA intron (NM_001352440, intron 2 of 20) GA-rich|Low_complexity|Low_complexity 16268 NM_001352442 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 139.5-25 chr13 46244878 46245050 + 1.25 NA intron (NM_001282460, intron 5 of 9) L1MEc|LINE|L1 33036 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 196.25-42 chr3 33864015 33864206 + 1.25 NA exon (NM_013374, exon 16 of 18) exon (NM_013374, exon 16 of 18) 65480 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 246.75-4 chr10 70856467 70856789 + 1.25 NA intron (NM_003901, intron 5 of 14) intron (NM_003901, intron 5 of 14) 31253 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 268.25-19 chr8 19631410 19631639 + 1.25 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -28979 NM_001354496 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 159.75-47 chr4 146890776 146890984 + 1.25 NA intron (NR_133922, intron 6 of 13) intron (NR_133922, intron 6 of 13) 54984 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 311.75-3 chr12 49094645 49094970 + 1.25 NA promoter-TSS (NM_021044) promoter-TSS (NM_021044) -6 NM_021044 50846 Hs.524382 NM_021044 ENSG00000139549 DHH GDXYM|HHG-3|SRXY7 desert hedgehog signaling molecule protein-coding 197.75-34 chr4 32991393 32991612 + 1.25 NA Intergenic Intergenic 640464 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 163.25-44 chr3 28329426 28329724 + 1.25 NA intron (NM_022461, intron 6 of 7) intron (NM_022461, intron 6 of 7) -19146 NM_001040432 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 138-18 chr13 35093492 35093735 + 1.25 NA intron (NM_015678, intron 10 of 57) intron (NM_015678, intron 10 of 57) 151326 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 234.25-14 chr19 45727853 45728233 + 1.25 NA intron (NM_001329633, intron 1 of 1) AluSx1|SINE|Alu 2853 NM_001080469 23403 Hs.128702 NM_001080469 ENSG00000177051 FBXO46 20D7-FC4|FBXO34L|Fbx46 F-box protein 46 protein-coding 155-16 chr13 19131490 19131724 + 1.25 NA Intergenic Intergenic -13324 NR_146902 107984132 Hs.614937 NR_146902 LOC107984132 - uncharacterized LOC107984132 ncRNA 167-60 chr7 38538997 38539151 + 1.25 NA intron (NM_001635, intron 1 of 20) L2|LINE|L2 92299 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 328.25 chr10 16440258 16440672 + 1.25 NA intron (NM_001261837, intron 2 of 4) intron (NM_001261837, intron 2 of 4) 3522 NM_001261838 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 277.75-4 chr10 52717766 52718033 + 1.25 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 37505 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 189-19 chr14 57235002 57235309 + 1.25 NA intron (NM_006544, intron 7 of 17) intron (NM_006544, intron 7 of 17) 33750 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 188-18 chr18 73402370 73402659 + 1.25 NA Intergenic LTR40b|LTR|ERVL 77573 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 183.5-10 chr10 71389053 71389317 + 1.25 NA Intergenic MIR|SINE|MIR -7735 NM_001171931 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 165-29 chr2 38985161 38985350 + 1.25 NA 3' UTR (NM_005633, exon 23 of 23) 3' UTR (NM_005633, exon 23 of 23) -24911 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 153.25-6 chr1 216352314 216352452 + 1.25 NA intron (NM_206933, intron 4 of 71) L2-3_Crp|LINE|L2 71013 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 146.5-70 chr5 27723008 27723167 + 1.25 NA Intergenic Intergenic 250795 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 320.25-16 chr9 3129038 3129403 + 1.25 NA Intergenic MIR|SINE|MIR -52369 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 231.25-27 chr3 107497051 107497417 + 1.25 NA Intergenic Intergenic -25728 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 145.75-9 chr14 37633906 37634073 + 1.25 NA intron (NM_001310135, intron 3 of 32) L1MD1|LINE|L1 38360 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 146-57 chr7 38166276 38166421 + 1.25 NA Intergenic L1MB2|LINE|L1 -11897 NM_001363344 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 334-10 chr6 150523751 150524132 + 1.25 NA Intergenic Intergenic -75944 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 153.75-38 chr19 37968726 37968936 + 1.25 NA intron (NM_015073, intron 1 of 21) MLT1K|LTR|ERVL-MaLR 61623 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 181.75-13 chr16 52431172 52431402 + 1.25 NA Intergenic Intergenic 115856 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 135.25-69 chr4 113850990 113851155 + 1.25 NA Intergenic Intergenic -89145 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 275.25 chr1 241066342 241066606 + 1.25 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -65798 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 262.5-17 chr2 26277525 26277824 + 1.25 NA intron (NM_001281512, intron 6 of 14) intron (NM_001281512, intron 6 of 14) 32735 NM_001281513 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 220.25-6 chr10 36213088 36213394 + 1.25 NA Intergenic L2b|LINE|L2 434939 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 233.25-17 chr18 53490598 53491065 + 1.25 NA intron (NM_005215, intron 26 of 28) intron (NM_005215, intron 26 of 28) -77616 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 147-3 chr1 41314307 41314449 + 1.25 NA Intergenic HAL1ME|LINE|L1 -47056 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 124.75-78 chr6 74820093 74820259 + 1.25 NA Intergenic L1MA5|LINE|L1 308606 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 184.25-17 chr2 8641996 8642168 + 1.25 NA Intergenic Intergenic 39779 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 130.75-50 chr3 5396991 5397130 + 1.25 NA Intergenic Intergenic -146805 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 158-66 chr8 114264159 114264417 + 1.25 NA Intergenic Intergenic -827349 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 178-12 chr11 84454422 84454765 + 1.25 NA intron (NM_001142699, intron 7 of 27) L1ME1|LINE|L1 -137254 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 144.5-2 chr1 69414827 69414975 + 1.25 NA Intergenic L1ME3A|LINE|L1 -18354 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 212.25-33 chr4 94496394 94496709 + 1.25 NA intron (NM_001256428, intron 2 of 11) AluJb|SINE|Alu 44609 NM_001011513 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 198.75-30 chr3 191789219 191789394 + 1.25 NA Intergenic Intergenic 328143 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 207.75-34 chr6 13002347 13002532 + 1.25 NA intron (NM_001322313, intron 1 of 12) intron (NM_001322313, intron 1 of 12) -11115 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 330-5 chr2 137472254 137472613 + 1.25 NA intron (NM_001316349, intron 15 of 27) Charlie1a|DNA|hAT-Charlie 455499 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 237.75-11 chr11 80116849 80117186 + 1.25 NA Intergenic Intergenic 645786 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 260.25-15 chr22 28961788 28962080 + 1.25 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 44545 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 206.25-11 chr12 40623265 40623535 + 1.25 NA Intergenic L2c|LINE|L2 -69039 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 214.25-3 chr1 87208429 87208932 + 1.25 NA Intergenic Intergenic -3989 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 201.25-5 chr11 27535227 27535487 + 1.25 NA intron (NR_033314, intron 1 of 6) L1PA15|LINE|L1 -20310 NR_107054 102465881 NR_107054 ENSG00000278483 MIR8087 hsa-mir-8087 microRNA 8087 ncRNA 225.25-20 chr3 29151995 29152314 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 128785 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 116-78 chr9 88929579 88929671 + 1.25 NA Intergenic L1MB8|LINE|L1 -61238 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 173.25-58 chr6 45152185 45152343 + 1.25 NA intron (NM_001350325, intron 2 of 10) L2a|LINE|L2 45506 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 159.75-10 chr11 28861363 28861515 + 1.25 NA Intergenic Intergenic -383891 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 129-8 chr10 66018325 66018440 + 1.25 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 446957 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 202.75-37 chr9 28058305 28058563 + 1.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -484568 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 240.5-26 chr2 124092495 124092850 + 1.25 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 67385 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 176.75-42 chr5 34436385 34436566 + 1.25 NA Intergenic AluJb|SINE|Alu -191751 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 245.25-4 chr1 215212218 215212670 + 1.25 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 129707 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 159.75-13 chr12 52427923 52428087 + 1.25 NA intron (NM_004693, intron 7 of 8) intron (NM_004693, intron 7 of 8) 6366 NM_004693 9119 Hs.697046 NM_004693 ENSG00000170454 KRT75 K6HF|KB18|PFB keratin 75 protein-coding 251-11 chr14 61471141 61471454 + 1.25 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 98897 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 213.75-8 chr1 195901986 195902276 + 1.25 NA Intergenic Intergenic 186584 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 180.5-36 chr2 26739473 26739845 + 1.25 NA Intergenic L1ME1|LINE|L1 -24625 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 268.75-26 chr5 104604680 104604996 + 1.25 NA Intergenic MIR|SINE|MIR -494636 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 202.75-6 chr14 37038789 37039001 + 1.25 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -86504 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 141-10 chr10 114150061 114150193 + 1.25 NA intron (NM_001321829, intron 5 of 16) intron (NM_001321829, intron 5 of 16) 24052 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 268-31 chr9 4293866 4294191 + 1.25 NA intron (NM_001042413, intron 1 of 10) intron (NM_001042413, intron 1 of 10) 6040 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 134.5-62 chr3 111281478 111281639 + 1.25 NA Intergenic Intergenic 209742 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 114.25-53 chr2 24515844 24515956 + 1.25 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 24023 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 124.5-66 chr22 41866826 41866980 + 1.25 NA exon (NM_004599, exon 2 of 19) exon (NM_004599, exon 2 of 19) -32238 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 241.5-5 chr11 48085903 48086242 + 1.25 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -10710 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 170-40 chr4 55503538 55503710 + 1.25 NA intron (NM_004898, intron 2 of 22) L1ME3|LINE|L1 42308 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 281.75-3 chr12 122864169 122864547 + 1.25 NA TTS (NM_024667) TTS (NM_024667) 28901 NM_003959 9026 Hs.524815 NM_003959 ENSG00000130787 HIP1R HIP12|HIP3|ILWEQ huntingtin interacting protein 1 related protein-coding 193.75-18 chr18 9877768 9878034 + 1.25 NA Intergenic Intergenic -8072 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 174-38 chr4 33176623 33176859 + 1.25 NA Intergenic Intergenic 825703 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 128.5-70 chr4 159870723 159870854 + 1.25 NA Intergenic MER103C|DNA|hAT-Charlie -93004 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 125.25-82 chr8 24090375 24090538 + 1.25 NA Intergenic Intergenic -203584 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 136-22 chr15 101168106 101168269 + 1.25 NA Intergenic Intergenic 83861 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 212-14 chr15 55893731 55894096 + 1.25 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 23218 NM_001284339 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 132-45 chr20 37539827 37539990 + 1.25 NA Intergenic Intergenic -11977 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 319-6 chr20 19784671 19785109 + 1.25 NA Intergenic L1MC4|LINE|L1 -101631 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 158.5-13 chr10 21861172 21861319 + 1.25 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 142485 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 154.75-47 chr4 43635547 43635736 + 1.25 NA Intergenic MER63D|DNA|hAT-Blackjack -143098 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 197.25-29 chr15 90312107 90312277 + 1.25 NA Intergenic L1M1|LINE|L1 37255 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 147.75-77 chr7 53351681 53351881 + 1.25 NA Intergenic Intergenic 316148 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 278-26 chr7 122382079 122382331 + 1.25 NA intron (NM_001167940, intron 24 of 29) L1MEi|LINE|L1 -77455 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 286.5-17 chr8 121189679 121190195 + 1.25 NA Intergenic Intergenic -377891 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 296-9 chr19 29293056 29293657 + 1.25 NA intron (NR_040029, intron 9 of 9) LTR33|LTR|ERVL -80205 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 126.25-24 chr12 48207478 48207701 + 1.25 NA Intergenic L1PA16|LINE|L1 -4297 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 124.5-69 chr3 99299172 99299327 + 1.25 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -339345 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 232.5-40 chr5 42554211 42554593 + 1.25 NA intron (NM_001242405, intron 1 of 9) intron (NM_001242405, intron 1 of 9) 4322 NM_001242405 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 234.5-25 chr2 171684416 171684615 + 1.25 NA Intergenic AluJr|SINE|Alu -2954 NM_001378 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 161.25-62 chr5 6163380 6163520 + 1.25 NA Intergenic Intergenic 173842 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 152.5-98 chr8 47214632 47214854 + 1.25 NA Intergenic HERV35I-int|LTR|ERV1 25436 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 158-26 chr19 10076889 10077073 + 1.25 NA Intergenic L1M4|LINE|L1 -9336 NM_001308277 55337 Hs.655613 NM_018381 ENSG00000130813 SHFL C19orf66|IRAV|RyDEN|SFL shiftless antiviral inhibitor of ribosomal frameshifting protein-coding 143.75-47 chr2 48514458 48514606 + 1.25 NA intron (NR_024188, intron 21 of 21) intron (NR_024188, intron 21 of 21) -15393 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 229-35 chr8 125536125 125536422 + 1.25 NA Intergenic Intergenic 104064 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 256.25-18 chr8 119507677 119508096 + 1.25 NA Intergenic Intergenic 85122 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 207.75-32 chr5 13269403 13269638 + 1.25 NA Intergenic Intergenic -236634 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 213.75-11 chr10 65261664 65262105 + 1.25 NA Intergenic THE1A|LTR|ERVL-MaLR -309541 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 173.75-61 chr9 29810408 29810711 + 1.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR -596958 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165.25-4 chr1 112473576 112473758 + 1.25 NA intron (NM_001291880, intron 1 of 4) L1MEc|LINE|L1 7126 NM_001291880 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 137.5-21 chr12 40152203 40152460 + 1.25 NA Intergenic Intergenic -3908 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 155.75-61 chr6 134102892 134103067 + 1.25 NA Intergenic MER89|LTR|ERV1 14701 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 115.25-54 chr2 193896384 193896509 + 1.25 NA Intergenic Intergenic -447823 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 163-8 chr11 78546456 78546742 + 1.25 NA non-coding (NR_120566, exon 2 of 4) non-coding (NR_120566, exon 2 of 4) 13423 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 198.25-20 chr19 39371295 39371564 + 1.25 NA intron (NM_018028, intron 6 of 15) intron (NM_018028, intron 6 of 15) 19677 NM_019088 54623 Hs.466714 NM_019088 ENSG00000006712 PAF1 F23149_1|PD2 PAF1 homolog, Paf1/RNA polymerase II complex component protein-coding 216.75-23 chr2 76123490 76123789 + 1.25 NA Intergenic Intergenic -412724 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 219-18 chr2 202396678 202396861 + 1.25 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 20442 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 363.75-4 chr3 17301409 17301901 + 1.25 NA intron (NM_014744, intron 14 of 21) L2c|LINE|L2 368459 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 241.5-34 chr7 82933896 82934129 + 1.25 NA intron (NM_033026, intron 6 of 24) intron (NM_033026, intron 6 of 24) 228872 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 123-64 chr8 6202491 6202692 + 1.25 NA Intergenic Intergenic 203957 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 117.5-9 chr10 49617561 49617758 + 1.25 NA intron (NM_001142929, intron 2 of 14) intron (NM_001142929, intron 2 of 14) 3622 NM_001142929 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 129-15 chr12 47650369 47650512 + 1.25 NA Intergenic Intergenic 55590 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 257.75-14 chr2 154302019 154302308 + 1.25 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 155275 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 203.25-45 chr6 51579562 51579854 + 1.25 NA Intergenic Intergenic -42162 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 121.5-34 chr14 69642000 69642160 + 1.25 NA intron (NM_014734, intron 1 of 5) L1MEc|LINE|L1 30484 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 170-31 chr3 69469505 69469700 + 1.25 NA Intergenic Intergenic -83514 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 245-30 chr5 78406249 78406556 + 1.25 NA intron (NR_110885, intron 2 of 7) intron (NR_110885, intron 2 of 7) 45785 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 276.5-14 chr5 36064472 36064959 + 1.25 NA intron (NR_031764, intron 1 of 5) intron (NR_031764, intron 1 of 5) 2167 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 127-92 chr8 78538138 78538326 + 1.25 NA intron (NR_125389, intron 2 of 2) intron (NR_125389, intron 2 of 2) 20271 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 175-37 chr21 28544172 28544414 + 1.25 NA Intergenic Intergenic 4975 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 300.75-3 chr11 115558883 115559131 + 1.25 NA Intergenic MER1A|DNA|hAT-Charlie -54592 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 156.25-59 chr5 16270094 16270335 + 1.25 NA Intergenic L2c|LINE|L2 89973 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 157.25-42 chr20 34123723 34124057 + 1.25 NA Intergenic Intergenic -11647 NM_001316363 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 250.5-8 chr11 86755463 86755759 + 1.25 NA Intergenic MIR3|SINE|MIR -35460 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 145-17 chr14 73646876 73647004 + 1.25 NA intron (NM_031427, intron 1 of 7) intron (NM_031427, intron 1 of 7) 1954 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 205.5-50 chr6 155761427 155761650 + 1.25 NA Intergenic Intergenic -185259 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 142.25-69 chr7 108701854 108702097 + 1.25 NA Intergenic Intergenic 132101 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 215.75-17 chr4 95441594 95441789 + 1.25 NA intron (NM_003728, intron 1 of 15) MIR|SINE|MIR 107282 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 222.25-25 chr5 162716772 162717046 + 1.25 NA Intergenic Intergenic 649267 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 130.75-28 chr16 20639022 20639174 + 1.25 NA intron (NR_134918, intron 7 of 10) intron (NR_134918, intron 7 of 10) 52158 NR_134918 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium chain family member 1 protein-coding 127-64 chr3 134060958 134061157 + 1.25 NA Intergenic Intergenic -3409 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 213.25-28 chr3 2205793 2205998 + 1.25 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -32934 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 158.5-59 chr2 139949116 139949328 + 1.25 NA Intergenic Tigger19b|DNA|TcMar-Tigger 637463 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 141.25-59 chr5 24675867 24676010 + 1.25 NA Intergenic Intergenic -30960 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 151.75-73 chr7 126068296 126068446 + 1.25 NA Intergenic Intergenic -804080 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 182.5-27 chr2 27566536 27566721 + 1.25 NA Intergenic Intergenic -9894 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 226.5-5 chr1 160132621 160132829 + 1.25 NA intron (NM_000702, intron 13 of 22) L2|LINE|L2 16966 NM_000702 477 Hs.34114 NM_000702 ENSG00000018625 ATP1A2 FHM2|MHP2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding 198.75 chr1 109243235 109243550 + 1.25 NA Intergenic Intergenic -6147 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 148.25-62 chr6 40884490 40884637 + 1.25 NA intron (NR_110873, intron 4 of 5) CR1-16_AMi|LINE|CR1 138717 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 245-12 chr16 74784345 74784608 + 1.25 NA Intergenic L1ME3A|LINE|L1 -9656 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 240-25 chr8 81336695 81337068 + 1.25 NA Intergenic MIRb|SINE|MIR 56345 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 122-79 chrX 88196768 88196929 + 1.25 NA Intergenic L1PB3|LINE|L1 -550377 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 221.75-24 chr7 34377693 34377954 + 1.25 NA intron (NR_033665, intron 3 of 3) MER57B2|LTR|ERV1 -280395 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 231.5-15 chr17 61956345 61956755 + 1.25 NA intron (NM_005121, intron 23 of 29) AluSc8|SINE|Alu -28568 NM_001351695 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 120.75-98 chr8 113954099 113954253 + 1.25 NA Intergenic L1MD1|LINE|L1 -517237 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 121.5-59 chr2 51702397 51702513 + 1.25 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -668193 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 160.5-83 chr9 102935149 102935399 + 1.25 NA Intergenic L1MD1|LINE|L1 -60059 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 250-15 chr2 129618183 129618538 + 1.25 NA Intergenic Intergenic 259131 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 178-29 chr20 12831879 12832093 + 1.25 NA Intergenic Intergenic 104977 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 193.25-31 chr4 136292189 136292484 + 1.25 NA Intergenic AluSz|SINE|Alu -378656 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 184 chr1 38453866 38454166 + 1.25 NA Intergenic Intergenic -21180 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 242.25-24 chr5 51033862 51034274 + 1.25 NA Intergenic Intergenic -63881 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 252.75-13 chr2 113047065 113047289 + 1.25 NA intron (NM_173178, intron 1 of 4) L1MC3|LINE|L1 5690 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 125-68 chr3 180413168 180413361 + 1.25 NA promoter-TSS (NR_132416) promoter-TSS (NR_132416) -909 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 176.5-77 chr6 152860067 152860368 + 1.25 NA Intergenic Intergenic 109420 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 246.75-31 chr7 5346440 5346837 + 1.25 NA intron (NM_001080495, intron 17 of 29) FLAM_C|SINE|Alu 63695 NM_001300847 222962 Hs.4302 NM_153247 ENSG00000164638 SLC29A4 ENT4|PMAT solute carrier family 29 member 4 protein-coding 275.75-19 chr7 31708258 31708522 + 1.25 NA TTS (NM_006658) TTS (NM_006658) 21175 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 268.75-3 chr1 105016462 105016848 + 1.25 NA Intergenic L1MCb|LINE|L1 602280 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 137-20 chr13 102897815 102898032 + 1.25 NA Intergenic LTR16A|LTR|ERVL 17824 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 156.75-2 chr1 26466922 26467074 + 1.25 NA intron (NR_125952, intron 1 of 3) L2c|LINE|L2 539 NR_125953 101928324 Hs.663256 NR_125952 LOC101928324 - uncharacterized LOC101928324 ncRNA 191-19 chr2 12158112 12158346 + 1.25 NA intron (NR_110196, intron 2 of 5) L1MB8|LINE|L1 -40901 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 122.25-60 chr21 19062534 19062674 + 1.25 NA Intergenic Intergenic -302792 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 265.5-7 chr11 54942950 54943173 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 236229 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 163-31 chr22 26529398 26529577 + 1.25 NA intron (NM_003595, intron 5 of 6) MER21C|LTR|ERVL 16955 NR_144529 100507599 Hs.405877 NR_144529 LOC100507599 - uncharacterized LOC100507599 ncRNA 126-74 chr6 74958879 74958986 + 1.25 NA Intergenic L1MC3|LINE|L1 169850 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 112.75-6 chr1 207581534 207581642 + 1.25 NA intron (NM_000573, intron 23 of 38) intron (NM_000573, intron 23 of 38) -63545 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 400-3 chr14 46640869 46641230 + 1.25 NA Intergenic Intergenic 10732 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 141-24 chr15 101408018 101408137 + 1.25 NA intron (NM_138325, intron 6 of 13) MIR3|SINE|MIR 73640 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 164-66 chr8 84849211 84849378 + 1.25 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 143367 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 195.75-19 chr17 43306267 43306629 + 1.25 NA Intergenic Intergenic -6217 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 169-6 chr1 244297143 244297407 + 1.25 NA Intergenic Intergenic -55360 NM_001276348 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 180-75 chr9 137041279 137041461 + 1.25 NA intron (NM_015392, intron 2 of 8) intron (NM_015392, intron 2 of 8) 4807 NM_015392 56654 Hs.719906 NM_015392 ENSG00000107281 NPDC1 CAB|CAB-|CAB-1|CAB1|NPDC-1 neural proliferation, differentiation and control 1 protein-coding 179-59 chr8 138009675 138010005 + 1.25 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 73705 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 188.25-16 chr16 72191874 72192152 + 1.25 NA Intergenic L1ME3F|LINE|L1 -19563 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 250-16 chr2 141906670 141907077 + 1.25 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 224828 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 132.5-79 chr4 30487862 30488237 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -232320 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 113.75-57 chr2 85196552 85196677 + 1.25 NA intron (NM_031283, intron 3 of 11) FLAM_C|SINE|Alu 10205 NR_046797 100874334 Hs.693125 NR_046797 ENSG00000231134 TCF7L1-IT1 - TCF7L1 intronic transcript 1 ncRNA 204-33 chr5 148301859 148302152 + 1.25 NA intron (NR_105057, intron 3 of 4) L3|LINE|CR1 -10418 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 192-45 chr6 95655350 95655691 + 1.25 NA Intergenic L1MC3|LINE|L1 77985 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 165.75-42 chr3 104160995 104161157 + 1.25 NA Intergenic Intergenic -636960 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 174.75-33 chr3 96551857 96552038 + 1.25 NA Intergenic Intergenic 191983 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 260.5-14 chr18 13628687 13629013 + 1.25 NA intron (NM_001003675, intron 2 of 2) AluJr|SINE|Alu -12908 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 359-2 chr17 26884088 26884441 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 204977 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 173.5-63 chr3 21502660 21502926 + 1.25 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) -39996 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 145.5-68 chr4 84164626 84164819 + 1.25 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 134447 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 193-21 chr14 56463614 56463808 + 1.25 NA Intergenic Intergenic -50620 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 138.25-6 chr1 114442305 114442540 + 1.25 NA intron (NM_015906, intron 4 of 19) AluSx1|SINE|Alu 68781 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 182.25-52 chr7 54712197 54712342 + 1.25 NA Intergenic Intergenic 46942 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 146.25-6 chr1 187656437 187656678 + 1.25 NA Intergenic Intergenic 212929 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 243.75-27 chr7 53880777 53881088 + 1.25 NA Intergenic Intergenic -69001 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 190.5-74 chr9 92371596 92371795 + 1.25 NA intron (NM_001286969, intron 3 of 6) L1M2|LINE|L1 32883 NM_014057 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 209.25-14 chr16 76463280 76463569 + 1.25 NA intron (NR_136213, intron 9 of 23) intron (NR_136213, intron 9 of 23) 153572 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 262.5-15 chr18 63307657 63307952 + 1.25 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 11576 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 125-54 chr2 132613963 132614167 + 1.25 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 56140 NM_144586 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 360.75-8 chr4 76580783 76581149 + 1.25 NA intron (NM_020859, intron 2 of 10) L1PA6|LINE|L1 5415 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 125.75-73 chr8 91512817 91512967 + 1.25 NA Intergenic Intergenic 263573 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 192.25-23 chr2 174250435 174250669 + 1.25 NA Intergenic Intergenic -2020 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 251.25-11 chr14 78193366 78193588 + 1.25 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 23104 NR_073547 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 228-48 chr8 137385349 137385679 + 1.25 NA Intergenic L1M5|LINE|L1 28074 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 118-75 chr8 137959980 137960117 + 1.25 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 123497 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 204.75-4 chr11 9092634 9092920 + 1.25 NA Intergenic Intergenic -1178 NM_001170690 57758 Hs.523468 NM_020974 ENSG00000175356 SCUBE2 CEGB1|CEGF1|CEGP1|scube/You signal peptide, CUB domain and EGF like domain containing 2 protein-coding 141.25-45 chr19 41266577 41266777 + 1.25 NA intron (NM_001301016, intron 1 of 14) intron (NM_001301016, intron 1 of 14) 1596 NM_001321211 11100 Hs.155218 NM_007040 ENSG00000105323 HNRNPUL1 E1B-AP5|E1BAP5|HNRPUL1 heterogeneous nuclear ribonucleoprotein U like 1 protein-coding 238-3 chr1 95558531 95558802 + 1.25 NA Intergenic HAL1ME|LINE|L1 48550 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 234.5-27 chr20 48572605 48572988 + 1.25 NA Intergenic Intergenic 212885 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 149.5-105 chr8 79357412 79357572 + 1.25 NA Intergenic Intergenic 25304 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 228-27 chr3 72744173 72744481 + 1.25 NA Intergenic Intergenic -80078 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 379-6 chr21 45834483 45834808 + 1.25 NA intron (NR_038876, intron 1 of 2) intron (NR_038876, intron 1 of 2) 1774 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 192.25-7 chr1 216578688 216578962 + 1.25 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 144604 NM_001243515 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 170.25-38 chr20 31744619 31744768 + 1.25 NA intron (NM_012112, intron 2 of 17) AluJb|SINE|Alu 5403 NM_012112 22974 Hs.244580 NM_012112 ENSG00000088325 TPX2 C20orf1|C20orf2|DIL-2|DIL2|FLS353|GD:C20orf1|HCA519|HCTP4|REPP86|p100 TPX2 microtubule nucleation factor protein-coding 129.5-49 chr2 151785273 151785419 + 1.25 NA Intergenic L1MA8|LINE|L1 43075 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 135-79 chr9 120333774 120334016 + 1.25 NA Intergenic Intergenic -88845 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 134.75-38 chr2 150205245 150205490 + 1.25 NA Intergenic MIR|SINE|MIR 51640 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 239.75-17 chr2 48365232 48365450 + 1.25 NA intron (NM_002158, intron 5 of 6) intron (NM_002158, intron 5 of 6) 50659 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 284.25-22 chr7 4955506 4955746 + 1.25 NA intron (NR_072989, intron 1 of 8) MER33|DNA|hAT-Charlie 3561 NR_072989 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 250.25-7 chr2 189528585 189528933 + 1.25 NA Intergenic Intergenic 52052 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 255.25 chr10 28351399 28351681 + 1.25 NA Intergenic MER110|LTR|ERV1 -48476 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 162-17 chr18 13964188 13964432 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -48603 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 170.75-71 chr8 106952868 106953104 + 1.25 NA Intergenic Intergenic -182742 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 172.5-71 chr6 53368923 53369102 + 1.25 NA Intergenic Intergenic -19833 NM_001242830 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 138.5-71 chr3 66601508 66601717 + 1.25 NA Intergenic Intergenic -101191 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 166.75-46 chr5 24648217 24648383 + 1.25 NA Intergenic Intergenic -3322 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 228.25-15 chr2 45563924 45564252 + 1.25 NA intron (NM_018079, intron 9 of 20) L1MB5|LINE|L1 47179 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 225-21 chr3 178412391 178412664 + 1.25 NA Intergenic Intergenic -6674 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 125-93 chr8 61267781 61267907 + 1.25 NA Intergenic Intergenic -20126 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 242.25-17 chr20 42408195 42408537 + 1.25 NA intron (NM_133170, intron 9 of 31) L1M3|LINE|L1 -277117 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 257-2 chr1 217202764 217203121 + 1.25 NA Intergenic L1MA3|LINE|L1 -65240 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 302.25-10 chr3 159658327 159658615 + 1.25 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 110141 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 258.75-17 chr2 89780125 89780503 + 1.25 NA Intergenic Intergenic -142407 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 295.25-17 chr6 92859263 92859868 + 1.25 NA Intergenic Intergenic 559994 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 170.25-65 chr8 124420404 124420595 + 1.25 NA Intergenic Intergenic -30321 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 178.75-2 chr1 205534293 205534649 + 1.25 NA Intergenic Intergenic 29802 NM_212502 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 118.5-90 chr6 35628385 35628496 + 1.25 NA intron (NM_001145775, intron 4 of 11) intron (NM_001145775, intron 4 of 11) 36349 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 131.5-12 chr10 68410638 68410909 + 1.25 NA Intergenic Intergenic -3479 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 187-2 chr1 238156948 238157198 + 1.25 NA Intergenic Intergenic -266151 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 158.75-49 chr4 57579282 57579522 + 1.25 NA Intergenic L2c|LINE|L2 153530 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 134.75-7 chr1 229641968 229642101 + 1.25 NA intron (NM_014777, intron 4 of 9) intron (NM_014777, intron 4 of 9) 15787 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 255-24 chr6 10078166 10078404 + 1.25 NA Intergenic Intergenic -326217 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 212-12 chr14 58109794 58110128 + 1.25 NA intron (NM_001001872, intron 4 of 7) THE1D|LTR|ERVL-MaLR 42252 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 115.5-53 chr2 217717044 217717203 + 1.25 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 39470 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 287.5-7 chr12 46001248 46001552 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR -10826 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 202.5-2 chr10 32266706 32267059 + 1.25 NA TTS (NM_025209) TTS (NM_025209) 80276 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 159.75-35 chr3 11603680 11603963 + 1.25 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) 760 NM_001284391 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 129.75-66 chr5 74845591 74845862 + 1.25 NA intron (NM_015566, intron 1 of 12) intron (NM_015566, intron 1 of 12) -20167 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 150.25-22 chr14 35904096 35904378 + 1.25 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 77899 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 193.75-30 chr20 10050247 10050515 + 1.25 NA intron (NM_022096, intron 7 of 10) intron (NM_022096, intron 7 of 10) 15394 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 386.25-4 chr7 41425870 41426432 + 1.25 NA Intergenic Intergenic -267768 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 116.5-115 chr7 103665572 103665688 + 1.25 NA intron (NM_005045, intron 11 of 64) L1ME3Cz|LINE|L1 -219423 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 228.25-17 chr2 127739063 127739428 + 1.25 NA intron (NM_001006623, intron 7 of 7) intron (NM_001006623, intron 7 of 7) 37748 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 148-27 chr15 64244772 64244920 + 1.25 NA intron (NM_001329607, intron 4 of 11) L1M2|LINE|L1 -81691 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 276.25-12 chr9 18686889 18687224 + 1.25 NA intron (NM_001040272, intron 13 of 28) intron (NM_001040272, intron 13 of 28) 113750 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 128-54 chr5 131684427 131684574 + 1.25 NA intron (NM_133372, intron 11 of 17) intron (NM_133372, intron 11 of 17) -49271 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 298.25-3 chr1 193764290 193764635 + 1.25 NA Intergenic Intergenic 459717 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 171.25-53 chr7 51782949 51783149 + 1.25 NA Intergenic Intergenic -389793 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 216.75-24 chr2 213394910 213395134 + 1.25 NA intron (NR_047660, intron 8 of 14) L1MDb|LINE|L1 110558 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 212-24 chr2 62746431 62746685 + 1.25 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 39661 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 201-7 chr10 69213720 69214074 + 1.25 NA Intergenic L1MC3|LINE|L1 -6435 NM_025130 80201 Hs.522988 NM_025130 ENSG00000156510 HKDC1 - hexokinase domain containing 1 protein-coding 248.5-10 chr15 69483203 69483501 + 1.25 NA Intergenic Intergenic 30534 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 170.75-46 chr2 181671987 181672180 + 1.25 NA TTS (NR_146175) TTS (NR_146175) 8434 NR_146176 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 233-33 chr8 143177422 143177662 + 1.25 NA Intergenic HERV4_I-int|LTR|ERV1 -16888 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 204.5-58 chr7 29100631 29100862 + 1.25 NA intron (NM_001371268, intron 3 of 9) intron (NM_001371268, intron 3 of 9) -24287 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 231-27 chr3 196556977 196557227 + 1.25 NA intron (NM_001345915, intron 1 of 1) intron (NM_001345915, intron 1 of 1) 11452 NM_001345918 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 204.5-16 chr14 61495142 61495369 + 1.25 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 74939 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 116-71 chr8 62350308 62350464 + 1.25 NA intron (NM_001304533, intron 1 of 6) L1MB3|LINE|L1 101532 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 233.75-2 chr1 110581818 110582032 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR 24433 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 135.25-88 chr7 6133432 6133591 + 1.25 NA intron (NM_032172, intron 3 of 17) AluJo|SINE|Alu 28562 NM_001365764 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 238-11 chr13 73510352 73510631 + 1.25 NA Intergenic Intergenic -53753 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 200.25-5 chr1 190016670 190016921 + 1.25 NA Intergenic L1ME1|LINE|L1 459215 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 136.5-20 chr11 92583205 92583376 + 1.25 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 231194 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 232.25-26 chr6 71745199 71745563 + 1.25 NA Intergenic Intergenic -141322 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 189.25-35 chr5 66464396 66464689 + 1.25 NA Intergenic L1MB1|LINE|L1 47062 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 200.25-11 chr10 76392186 76392505 + 1.25 NA intron (NM_001305581, intron 6 of 6) L1MA8|LINE|L1 -495699 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 153.25-49 chr6 82899032 82899192 + 1.25 NA intron (NR_146807, intron 10 of 10) intron (NR_146807, intron 10 of 10) 166729 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 148-59 chr6 154420820 154421111 + 1.25 NA intron (NM_001368116, intron 9 of 12) intron (NM_001368116, intron 9 of 12) 13108 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 254.5-34 chr8 126992739 126993101 + 1.25 NA Intergenic Intergenic -20234 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 269.75-2 chr11 90808247 90808647 + 1.25 NA intron (NR_104190, intron 4 of 6) L1ME2|LINE|L1 60755 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 159-8 chr11 54851751 54851974 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 145030 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 170.75-36 chr2 45047801 45048059 + 1.25 NA Intergenic MamGypLTR1a|LTR|Gypsy -38478 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 133.5-7 chr1 176749864 176750013 + 1.25 NA intron (NM_020318, intron 14 of 22) L1MC1|LINE|L1 279507 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 213.5-51 chr8 127518683 127518907 + 1.25 NA Intergenic L1MD1|LINE|L1 -36656 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 287.75-10 chr8 92192943 92193222 + 1.25 NA Intergenic L4_B_Mam|LINE|RTE-X -89697 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 266-5 chr14 32907472 32907693 + 1.25 NA Intergenic Intergenic -31297 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 180.5-55 chr22 36664361 36664520 + 1.25 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 38418 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 221.25-25 chr4 109380579 109380889 + 1.25 NA Intergenic Intergenic -52981 NM_001042734 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 130-44 chr21 30547549 30547751 + 1.25 NA Intergenic L1PA15|LINE|L1 -5786 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 162.5-64 chr5 3266224 3266482 + 1.25 NA Intergenic Intergenic 88518 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 174.25-8 chr1 68893053 68893198 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -162773 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 176.75-46 chr5 97042604 97042898 + 1.25 NA Intergenic Tigger19a|DNA|TcMar-Tigger 84318 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 162.5-39 chr2 34669254 34669553 + 1.25 NA Intergenic Intergenic -8154 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 259.25-7 chr3 110077231 110077479 + 1.25 NA Intergenic L2|LINE|L2 474527 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 121-56 chr5 53432616 53432776 + 1.25 NA Intergenic Intergenic -47933 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 150.25-55 chr4 66051571 66051733 + 1.25 NA Intergenic MLT1J1|LTR|ERVL-MaLR -225172 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 253.5-6 chr10 107226807 107227044 + 1.25 NA Intergenic Intergenic -62219 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 277-17 chr3 162507797 162508195 + 1.25 NA Intergenic L1MEg|LINE|L1 795305 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 139.5-82 chr5 108861677 108861893 + 1.25 NA intron (NR_146155, intron 4 of 19) intron (NR_146155, intron 4 of 19) -62821 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 156.5-85 chr8 88937678 88937922 + 1.25 NA Intergenic Intergenic -610317 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 183-7 chr10 27854949 27855176 + 1.25 NA intron (NM_001290021, intron 12 of 13) L1ME1|LINE|L1 -109243 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 335.25-9 chr3 66399752 66400141 + 1.25 NA intron (NM_015541, intron 9 of 18) intron (NM_015541, intron 9 of 18) 100475 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 140.75-37 chr2 207390892 207391072 + 1.25 NA Intergenic Intergenic -121558 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 164-69 chr8 130258990 130259361 + 1.25 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 37358 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 237.75-31 chr22 41865973 41866309 + 1.25 NA intron (NR_103834, intron 1 of 21) MIR1_Amn|SINE|MIR -31476 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 181.75-27 chr3 183717333 183717535 + 1.25 NA intron (NM_001351371, intron 2 of 21) L1MC4|LINE|L1 7195 NM_001351369 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 192.5-7 chr10 116378771 116378960 + 1.25 NA intron (NM_198515, intron 8 of 8) intron (NM_198515, intron 8 of 8) -48982 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 173.25-8 chr10 81666842 81667031 + 1.25 NA Intergenic Intergenic -208258 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 251.75-2 chr1 86607573 86607896 + 1.25 NA intron (NR_135837, intron 4 of 4) L1MA2|LINE|L1 -26542 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 125.75-17 chr12 46053013 46053168 + 1.25 NA Intergenic L1PA16|LINE|L1 -62516 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 207.5-14 chr12 100100849 100101099 + 1.25 NA intron (NM_001006947, intron 4 of 12) intron (NM_001006947, intron 4 of 12) 41900 NM_001006947 23074 Hs.572154 NM_015054 ENSG00000111647 UHRF1BP1L SHIP164 UHRF1 binding protein 1 like protein-coding 183.5-33 chr18 66554118 66554384 + 1.25 NA intron (NM_001271028, intron 4 of 9) intron (NM_001271028, intron 4 of 9) 49839 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 158-44 chr4 35774550 35774747 + 1.25 NA Intergenic L1MC4|LINE|L1 469291 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 249.5-21 chr4 129141796 129142158 + 1.25 NA Intergenic X6B_LINE|LINE|CR1 45825 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 141.75-34 chr18 3099575 3099769 + 1.25 NA intron (NM_019856, intron 24 of 36) intron (NM_019856, intron 24 of 36) -87725 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 181-15 chr11 42977824 42977985 + 1.25 NA Intergenic MER49|LTR|ERV1 291465 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 139.75-49 chr20 31931576 31931741 + 1.25 NA intron (NR_148013, intron 10 of 16) L1ME4a|LINE|L1 20388 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 236.5-42 chr6 140894051 140894259 + 1.25 NA Intergenic MER61-int|LTR|ERV1 210341 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 182.5-16 chr13 21630535 21630796 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -26495 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 207.5-36 chr22 34763205 34763514 + 1.25 NA intron (NR_138042, intron 3 of 4) MIRb|SINE|MIR 234557 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 251-16 chr2 213067949 213068320 + 1.25 NA intron (NM_001371277, intron 3 of 6) intron (NM_001371277, intron 3 of 6) 82303 NM_001371275 228.75-37 chr8 50097695 50097978 + 1.25 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -66295 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 142.75-83 chr8 63565980 63566204 + 1.25 NA Intergenic Intergenic 100243 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 293.5-10 chr2 37283019 37283484 + 1.25 NA intron (NM_005813, intron 5 of 17) MER5A|DNA|hAT-Charlie 33833 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 135.25-19 chr11 87204708 87204928 + 1.25 NA intron (NR_033149, intron 4 of 13) Tigger2a|DNA|TcMar-Tigger 166884 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 234.5-31 chr4 35729490 35729955 + 1.25 NA Intergenic Intergenic 514217 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 276.5-7 chr2 186142083 186142454 + 1.25 NA Intergenic Intergenic -55951 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 281.5-9 chr20 9129662 9130080 + 1.25 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 60817 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 246.75-27 chr6 120257879 120258132 + 1.25 NA Intergenic Intergenic 242826 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 348.25 chr10 121433161 121433579 + 1.25 NA Intergenic Intergenic 97944 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 170.75-25 chr15 23615796 23615982 + 1.25 NA Intergenic L2a|LINE|L2 31978 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 194.25-53 chrX 26944832 26945018 + 1.25 NA Intergenic Intergenic 386588 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 173.75-43 chr6 40351000 40351218 + 1.25 NA intron (NR_038887, intron 1 of 2) (CA)n|Simple_repeat|Simple_repeat 4897 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 118.75-97 chr9 20904820 20904992 + 1.25 NA intron (NM_017794, intron 23 of 45) intron (NM_017794, intron 23 of 45) 117979 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 142.5-96 chr8 121126019 121126207 + 1.25 NA Intergenic AluY|SINE|Alu -314067 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 202.75-7 chr14 38667893 38668143 + 1.25 NA Intergenic Intergenic -214578 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 250.75-11 chr2 63719464 63719750 + 1.25 NA Intergenic L1M5|LINE|L1 -121357 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 196.5-63 chr6 88157917 88158222 + 1.25 NA intron (NM_001365872, intron 2 of 4) intron (NM_001365872, intron 2 of 4) 4954 NM_001365874 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 176-33 chr5 6047894 6048050 + 1.25 NA Intergenic Intergenic 289320 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 128.5 chr1 35745072 35745223 + 1.25 NA intron (NM_001190481, intron 15 of 23) L1MB2|LINE|L1 24831 NM_001330490 63967 Hs.175613 NM_022111 ENSG00000092853 CLSPN - claspin protein-coding 137-73 chr9 20618855 20618999 + 1.25 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) 3011 NM_001286691 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 230.5-13 chr13 84342672 84343036 + 1.25 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 202252 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 221.5-37 chr5 57632468 57632707 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -18073 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 217.75-5 chr10 94785275 94785463 + 1.25 NA intron (NM_000769, intron 5 of 8) L1MB5|LINE|L1 22688 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 178.5-18 chr15 66820100 66820269 + 1.25 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 117948 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 172-48 chr8 137486066 137486391 + 1.25 NA Intergenic Intergenic -72640 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 180-55 chr5 108253074 108253233 + 1.25 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 128945 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 138.5-24 chr12 92052120 92052350 + 1.25 NA intron (NR_132341, intron 1 of 4) L2a|LINE|L2 89478 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 174.5-16 chr12 4742869 4743164 + 1.25 NA intron (NM_017417, intron 3 of 10) intron (NM_017417, intron 3 of 10) 22616 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 208.5-8 chr10 103803324 103803638 + 1.25 NA intron (NM_014631, intron 1 of 13) MIRb|SINE|MIR 51925 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 152-32 chr2 5992878 5993176 + 1.25 NA Intergenic Intergenic 11049 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 130.5-23 chr11 93691889 93692081 + 1.25 NA exon (NM_033395, exon 12 of 30) exon (NM_033395, exon 12 of 30) -29529 NR_002569 619383 Hs.660668 NR_002569 ENSG00000254911 SCARNA9 Z32|mgU2-19/30 small Cajal body-specific RNA 9 ncRNA 214.5-19 chr17 72268243 72268654 + 1.25 NA Intergenic LTR33|LTR|ERVL -74363 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 316-20 chr9 34224590 34224970 + 1.25 NA intron (NM_001171202, intron 2 of 5) intron (NM_001171202, intron 2 of 5) 45737 NM_001171204 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 152-26 chr15 54797275 54797510 + 1.25 NA Intergenic L2b|LINE|L2 -259355 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 241.25 chr10 71661549 71661773 + 1.25 NA intron (NM_022124, intron 13 of 67) intron (NM_022124, intron 13 of 67) 58117 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 207-34 chr21 25248686 25248934 + 1.25 NA Intergenic Intergenic 182891 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 165.25-52 chr7 41137206 41137377 + 1.25 NA Intergenic AluJb|SINE|Alu 35687 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 243.75-5 chr10 103998411 103998771 + 1.25 NA intron (NM_001304743, intron 4 of 17) intron (NM_001304743, intron 4 of 17) 31451 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 232.25-2 chr1 87211778 87212195 + 1.25 NA promoter-TSS (NM_001290053) promoter-TSS (NM_001290053) -683 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 151-63 chr7 13262836 13263123 + 1.25 NA Intergenic Intergenic 575346 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 148.5-98 chr7 23438368 23438554 + 1.25 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 32030 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 156.5-66 chr5 165143067 165143264 + 1.25 NA Intergenic Intergenic 672886 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 322.25-13 chr6 164398771 164399221 + 1.25 NA Intergenic Intergenic 423067 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 364.25 chr1 80520059 80520516 + 1.25 NA Intergenic Intergenic -15468 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 310.25-4 chr12 122182089 122182358 + 1.25 NA promoter-TSS (NM_001098519) promoter-TSS (NM_001098519) -900 NM_001098519 254050 Hs.374856 NM_152759 ENSG00000158113 LRRC43 - leucine rich repeat containing 43 protein-coding 124.5-96 chr7 9129057 9129165 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -505159 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 341.5-2 chr10 21155291 21155608 + 1.25 NA intron (NM_001173484, intron 2 of 6) L1MA2|LINE|L1 -18541 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 189-49 chr8 109769975 109770202 + 1.25 NA Intergenic Intergenic -78297 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 245-33 chr6 142938610 142938950 + 1.25 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 6396 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 192.5-48 chr5 147617031 147617440 + 1.25 NA intron (NM_001282282, intron 18 of 20) MIR|SINE|MIR 57241 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 313.5-4 chr15 34987800 34988200 + 1.25 NA intron (NM_014106, intron 1 of 2) intron (NM_014106, intron 1 of 2) 287 NM_014106 54989 Hs.744990 NM_014106 ENSG00000198146 ZNF770 PRO1914 zinc finger protein 770 protein-coding 137.75-43 chr2 25011570 25011784 + 1.25 NA intron (NR_034113, intron 2 of 2) AluJb|SINE|Alu -30399 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 114.5-99 chr7 82115460 82115662 + 1.25 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 106384 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 181.5-21 chr16 2585677 2586020 + 1.25 NA intron (NM_001261816, intron 10 of 11) intron (NM_001261816, intron 10 of 11) -17536 NR_015441 652276 Hs.720448 NR_015441 ENSG00000215154 LOC652276 - potassium channel tetramerization domain containing 5 pseudogene pseudo 207.5-42 chr3 114235960 114236169 + 1.25 NA 3' UTR (NM_007136, exon 1 of 1) 3' UTR (NM_007136, exon 1 of 1) 1514 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 121-19 chr14 42617813 42617920 + 1.25 NA Intergenic Intergenic 1011010 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 135.5-7 chr1 236518169 236518360 + 1.25 NA promoter-TSS (NM_201545) promoter-TSS (NM_201545) 50 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 261-24 chr2 45155249 45155540 + 1.25 NA Intergenic Intergenic 99547 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 256.75-7 chr2 63060722 63061003 + 1.25 NA Intergenic Intergenic 10032 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 173-45 chr5 36446176 36446362 + 1.25 NA Intergenic Intergenic -144367 NM_001323275 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 148.5-83 chr5 121242533 121242720 + 1.25 NA Intergenic L1MA9|LINE|L1 -79924 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 171 chr1 34687382 34687588 + 1.25 NA Intergenic L1ME1|LINE|L1 -17791 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 181.25-14 chr14 20540209 20540385 + 1.25 NA Intergenic MamRep1151|LTR?|LTR? 20634 NM_001110358 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 169.25-49 chr5 108844148 108844321 + 1.25 NA intron (NR_146155, intron 4 of 19) L1MC5a|LINE|L1 -80372 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 301.5-17 chr7 6061251 6061608 + 1.25 NA Intergenic L1M5|LINE|L1 -2200 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 123.75-89 chr5 123671558 123671685 + 1.25 NA Intergenic Intergenic 126204 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 256.5-33 chr5 120609841 120610052 + 1.25 NA intron (NM_001308088, intron 1 of 3) intron (NM_001308088, intron 1 of 3) 78482 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 167.5-58 chr3 191194325 191194539 + 1.25 NA Intergenic L1ME1|LINE|L1 -4809 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 261.75-20 chr3 113859432 113859646 + 1.25 NA intron (NM_017577, intron 2 of 17) intron (NM_017577, intron 2 of 17) 20751 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 160.5-74 chr7 122465865 122466118 + 1.25 NA intron (NM_001167940, intron 14 of 29) intron (NM_001167940, intron 14 of 29) -161241 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 166.25-9 chr11 66174500 66174686 + 1.25 NA intron (NM_018026, intron 1 of 23) L1MB8|LINE|L1 -82701 NM_001134775 64837 Hs.280792 NM_022822 ENSG00000174996 KLC2 - kinesin light chain 2 protein-coding 205.75-31 chr4 19630377 19630774 + 1.25 NA Intergenic Intergenic -621330 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 432.25-2 chr21 20669513 20670054 + 1.25 NA Intergenic Intergenic 133325 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 159.5-72 chr5 136356357 136356519 + 1.25 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) 9038 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 185.5-54 chr4 114857681 114857898 + 1.25 NA intron (NM_022569, intron 7 of 13) ERV3-16A3_I-int|LTR|ERVL 201030 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 127.75-75 chr5 44268283 44268481 + 1.25 NA Intergenic Intergenic -120350 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 140.75-54 chr6 64103958 64104120 + 1.25 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 297203 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 183.75-53 chr7 117123269 117123533 + 1.25 NA intron (NR_161419, intron 3 of 15) intron (NR_161419, intron 3 of 15) 22191 NR_109981 93654 Hs.628891 NR_002331 ENSG00000226367 ST7-AS2 ST7AS2|ST7OT2 ST7 antisense RNA 2 ncRNA 160.75-70 chr8 131749024 131749382 + 1.25 NA Intergenic Intergenic -154890 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 205.25-12 chr15 59228727 59228992 + 1.25 NA intron (NM_004998, intron 6 of 27) intron (NM_004998, intron 6 of 27) 22016 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 119.25-11 chr11 17830417 17830596 + 1.25 NA intron (NR_104040, intron 11 of 11) MSTD|LTR|ERVL-MaLR 94558 NM_004976 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 196-26 chr22 49719164 49719372 + 1.25 NA Intergenic Intergenic -61749 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 217-29 chr8 74619252 74619598 + 1.25 NA intron (NR_033830, intron 2 of 5) L1MA8|LINE|L1 19559 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 202.5-43 chr5 101861696 101861953 + 1.25 NA Intergenic L1PA13|LINE|L1 434460 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 121.75-15 chr12 50956621 50956821 + 1.25 NA intron (NM_001109619, intron 3 of 4) intron (NM_001109619, intron 3 of 4) 4177 NM_001109619 613227 Hs.702849 NM_001109619 ENSG00000214511 HIGD1C GM921 HIG1 hypoxia inducible domain family member 1C protein-coding 225-31 chr6 27384077 27384367 + 1.25 NA intron (NM_001322288, intron 1 of 3) AluSz6|SINE|Alu -4496 NM_001076781 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 127.75-18 chr11 69741387 69741579 + 1.25 NA Intergenic Intergenic 33858 NM_002007 2249 Hs.1755 NM_002007 ENSG00000075388 FGF4 FGF-4|HBGF-4|HST|HST-1|HSTF-1|HSTF1|K-FGF|KFGF fibroblast growth factor 4 protein-coding 202.25-12 chr16 51302856 51303064 + 1.25 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -151688 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 174.5 chr1 62330148 62330322 + 1.25 NA Intergenic L2c|LINE|L2 -10801 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 163.5-23 chr12 42390282 42390466 + 1.25 NA intron (NM_001364830, intron 5 of 6) intron (NM_001364830, intron 5 of 6) 58576 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 242-22 chr2 32476590 32476865 + 1.25 NA intron (NM_016252, intron 34 of 73) intron (NM_016252, intron 34 of 73) -55426 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 189-13 chr10 113563080 113563360 + 1.25 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 10167 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 153.25-56 chr8 124866816 124867039 + 1.25 NA Intergenic L2c|LINE|L2 -44869 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 132-75 chr8 83190927 83191150 + 1.25 NA Intergenic Intergenic -212720 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 225-33 chr6 131743221 131743436 + 1.25 NA intron (NR_133007, intron 23 of 23) MIR|SINE|MIR -32311 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 191-38 chr4 54617403 54617656 + 1.25 NA Intergenic Intergenic -10398 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 364.25-8 chrX 88372902 88373362 + 1.25 NA Intergenic Intergenic -374093 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 153-6 chr11 18236889 18237041 + 1.25 NA promoter-TSS (NM_006512) promoter-TSS (NM_006512) -163 NM_006512 6291 Hs.1955 NM_006512 ENSG00000148965 SAA4 C-SAA|CSAA serum amyloid A4, constitutive protein-coding 245.5-11 chr2 123438007 123438482 + 1.25 NA Intergenic MER102b|DNA|hAT-Charlie -364763 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 143.5-82 chr5 30371293 30371436 + 1.25 NA Intergenic Intergenic 490804 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 229.5-3 chr1 97294753 97295122 + 1.25 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 199014 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 126.5-7 chr1 92839745 92839886 + 1.25 NA promoter-TSS (NR_002444) promoter-TSS (NR_002444) -904 NR_002444 26782 Hs.180946 NR_002444 ENSG00000207523 SNORA66 RNU66|U66 small nucleolar RNA, H/ACA box 66 snoRNA 201.5-55 chr7 37071981 37072292 + 1.25 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 74340 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 159-17 chr12 130238092 130238348 + 1.25 NA Intergenic L1MC3|LINE|L1 75761 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 204.25-46 chr6 143722641 143722920 + 1.25 NA intron (NM_001100165, intron 2 of 11) L1MA4|LINE|L1 44815 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 124.25-80 chr8 82413810 82413966 + 1.25 NA Intergenic Intergenic -498216 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 184.5-10 chr10 76026446 76026739 + 1.25 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 243831 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 177-21 chr18 65569161 65569424 + 1.25 NA Intergenic L1MC5a|LINE|L1 -180960 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 242.25-23 chr4 164311406 164311698 + 1.25 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 71703 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 130.75-46 chr2 227560072 227560238 + 1.25 NA 3' UTR (NM_001135189, exon 12 of 12) 3' UTR (NM_001135189, exon 12 of 12) 58500 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 250.75-12 chr2 115877314 115877731 + 1.25 NA Intergenic L1PA8|LINE|L1 533707 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 164-10 chr11 59632237 59632430 + 1.25 NA Intergenic L1P3|LINE|L1 -16559 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 268-23 chr5 39627973 39628315 + 1.25 NA Intergenic MADE1|DNA|TcMar-Mariner 107713 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 185.25-16 chr14 56152772 56153168 + 1.25 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 34559 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 250.5-35 chr8 134408315 134408721 + 1.25 NA Intergenic AluJo|SINE|Alu -189553 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 207.25-31 chr7 74497282 74497528 + 1.25 NA intron (NM_016328, intron 1 of 26) AluJb|SINE|Alu 43499 NM_016328 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 232.25-28 chr9 5589868 5590053 + 1.25 NA Intergenic Intergenic -39147 NM_001135920 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 312.25-8 chr2 136827140 136827544 + 1.25 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 61797 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 306-19 chr5 94328347 94328658 + 1.25 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -216803 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 156.75-90 chr8 138427321 138427486 + 1.25 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 69858 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 138-61 chr5 104229833 104230084 + 1.25 NA Intergenic LTR55|LTR|ERVL? -667169 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 197-17 chr15 49805450 49805727 + 1.25 NA Intergenic Intergenic 184540 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 277.75-13 chr5 119503178 119503442 + 1.25 NA intron (NM_001199291, intron 15 of 24) intron (NM_001199291, intron 15 of 24) 50813 NM_001292027 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 245-22 chr3 125264586 125264963 + 1.25 NA intron (NM_001348434, intron 6 of 7) intron (NM_001348434, intron 6 of 7) -52009 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 120-79 chr7 7504957 7505061 + 1.25 NA intron (NM_001037763, intron 11 of 34) intron (NM_001037763, intron 11 of 34) 30864 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 186.25-54 chr8 118014882 118015146 + 1.25 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -94101 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 282.5-13 chr21 27393802 27394029 + 1.25 NA Intergenic Intergenic -328464 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 181-40 chr4 82664066 82664248 + 1.25 NA intron (NM_024906, intron 3 of 3) L1MCc|LINE|L1 -42720 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 244.25-21 chr6 129934591 129934938 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -73449 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 149-20 chr16 56487191 56487394 + 1.25 NA intron (NM_031885, intron 15 of 16) intron (NM_031885, intron 15 of 16) 32732 NM_031885 583 Hs.333738 NM_031885 ENSG00000125124 BBS2 BBS|RP74 Bardet-Biedl syndrome 2 protein-coding 144.75-87 chr8 125810098 125810289 + 1.25 NA Intergenic Intergenic 141004 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 186.75-14 chr14 33047802 33048000 + 1.25 NA intron (NM_001165893, intron 1 of 10) MIR3|SINE|MIR 109022 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 210.5-30 chr2 22367568 22367855 + 1.25 NA Intergenic MIRc|SINE|MIR -168768 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 166-31 chr18 73132118 73132364 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 132257 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 160.75-43 chr3 113020240 113020441 + 1.25 NA promoter-TSS (NM_001319111) promoter-TSS (NM_001319111) -669 NM_001319109 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 130.75-40 chr2 136085770 136086044 + 1.25 NA Intergenic Intergenic 30328 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 236.25-3 chr1 151410815 151411079 + 1.25 NA intron (NM_001194938, intron 11 of 17) L2a|LINE|L2 11374 NM_002796 5692 Hs.89545 NM_002796 ENSG00000159377 PSMB4 HN3|HsN3|PRAAS3|PROS-26|PROS26 proteasome subunit beta 4 protein-coding 194.25-11 chr12 39371489 39371681 + 1.25 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 71535 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 142.5-22 chr14 30741918 30742195 + 1.25 NA Intergenic L1MEc|LINE|L1 119737 NM_001257376 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 121.25-56 chr5 100024749 100024960 + 1.25 NA Intergenic L2a|LINE|L2 363400 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 240-9 chr14 77740349 77740620 + 1.25 NA intron (NM_001318844, intron 3 of 12) L2b|LINE|L2 -20284 NR_161324 283579 Hs.375834 NM_174943 ENSG00000197734 C14orf178 - chromosome 14 open reading frame 178 ncRNA 205.5-39 chr3 123760591 123760768 + 1.25 NA intron (NM_053025, intron 4 of 33) intron (NM_053025, intron 4 of 33) 71035 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 131.75-83 chr8 119218581 119218724 + 1.25 NA intron (NR_149111, intron 1 of 1) intron (NR_149111, intron 1 of 1) 10289 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 135.5-110 chr8 137341334 137341518 + 1.25 NA Intergenic MLT2B1|LTR|ERVL 72162 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 263.5-34 chrX 55363040 55363391 + 1.25 NA Intergenic Intergenic 83127 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 211.25-30 chr5 33016297 33016487 + 1.25 NA Intergenic Intergenic 68949 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 141.25-4 chr1 203562050 203562207 + 1.25 NA Intergenic Intergenic -64659 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 189.75-46 chr8 33516297 33516520 + 1.25 NA Intergenic L2c|LINE|L2 2933 NR_003041 692084 NR_003041 ENSG00000239039 SNORD13 RNU13|SNORD13A|U13 small nucleolar RNA, C/D box 13 snoRNA 192.75-38 chr6 41885480 41885850 + 1.25 NA intron (NM_018561, intron 2 of 6) AluSz6|SINE|Alu 9710 NM_018561 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 146.25-63 chr6 125676307 125676451 + 1.25 NA intron (NR_038906, intron 1 of 3) intron (NR_038906, intron 1 of 3) 2026 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 208.25-25 chr3 194749538 194749946 + 1.25 NA intron (NR_037891, intron 3 of 3) intron (NR_037891, intron 3 of 3) 18967 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 124.5-17 chr11 35529609 35529813 + 1.25 NA intron (NM_001282675, intron 1 of 12) intron (NM_001282675, intron 1 of 12) 589 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 124-17 chr12 105741436 105741541 + 1.25 NA intron (NR_110110, intron 2 of 2) intron (NR_110110, intron 2 of 2) 34714 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 164-34 chr20 33040699 33040875 + 1.25 NA intron (NM_174897, intron 11 of 14) MIRb|SINE|MIR 9139 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 287.5-15 chr2 52940448 52940790 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -238004 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 154-31 chr19 45590673 45590887 + 1.25 NA exon (NM_005282, exon 2 of 2) exon (NM_005282, exon 2 of 2) -5978 NM_001017989 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 202-32 chr9 18327481 18327756 + 1.25 NA Intergenic Intergenic -146535 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 154.25-10 chr10 87990486 87990653 + 1.25 NA Intergenic L1MEc|LINE|L1 126944 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 120-59 chr3 34073975 34074143 + 1.25 NA Intergenic Intergenic 275429 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 230.75-19 chr5 64044138 64044407 + 1.25 NA Intergenic L1M1|LINE|L1 -81980 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 278.5-20 chr22 21026918 21027375 + 1.25 NA 3' UTR (NM_001159554, exon 12 of 12) 3' UTR (NM_001159554, exon 12 of 12) 5415 NM_004173 6545 Hs.197116 NM_004173 ENSG00000099960 SLC7A4 CAT-4|CAT4|HCAT3|VH solute carrier family 7 member 4 protein-coding 138.5-87 chr5 67127562 67127689 + 1.25 NA intron (NM_001297651, intron 11 of 25) intron (NM_001297651, intron 11 of 25) 69174 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 143-18 chr12 60225982 60226210 + 1.25 NA Intergenic L1M4c|LINE|L1 536726 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 165-43 chr5 54180864 54181165 + 1.25 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 129559 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 150.25-64 chr5 125971819 125972044 + 1.25 NA Intergenic Intergenic -207646 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 159.75-46 chr4 91300242 91300608 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 976877 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 149.5-41 chr16 68425264 68425417 + 1.25 NA intron (NM_018667, intron 1 of 8) L3|LINE|CR1 23168 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 208-29 chr4 32607324 32607647 + 1.25 NA Intergenic L1M4|LINE|L1 256447 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 323.75-7 chr9 100266604 100266953 + 1.25 NA intron (NR_134606, intron 11 of 16) intron (NR_134606, intron 11 of 16) 85793 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 184.5-61 chr5 45340605 45340906 + 1.25 NA intron (NM_021072, intron 5 of 7) HSMAR2|DNA|TcMar-Mariner 355625 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 162-41 chr4 109001547 109001783 + 1.25 NA intron (NM_198721, intron 5 of 36) intron (NM_198721, intron 5 of 36) -238612 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 116-26 chr16 53818545 53818683 + 1.25 NA intron (NM_001363905, intron 3 of 9) L1ME4a|LINE|L1 114458 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 182.25-3 chr10 10987972 10988232 + 1.25 NA intron (NM_001326319, intron 4 of 16) L1PB2|LINE|L1 -16546 NM_001326329 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 175.75-23 chr2 227656327 227656521 + 1.25 NA Intergenic Intergenic -23104 NM_020161 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 179-8 chr10 80566870 80567033 + 1.25 NA intron (NM_001145719, intron 1 of 6) intron (NM_001145719, intron 1 of 6) 26132 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 307-2 chr11 101133710 101134170 + 1.25 NA intron (NR_073144, intron 3 of 4) L1ME1|LINE|L1 -4127 NM_000926 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 130-28 chr17 19904748 19904942 + 1.25 NA 3' UTR (NM_001330152, exon 14 of 14) 3' UTR (NM_001330152, exon 14 of 14) -36909 NM_014683 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 277.75 chr1 109276983 109277329 + 1.25 NA Intergenic AluJb|SINE|Alu 5988 NM_001350237 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 148.5-23 chr12 125241207 125241360 + 1.25 NA intron (NM_001366854, intron 1 of 8) Charlie4a|DNA|hAT-Charlie 54897 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 271-15 chr22 22860261 22860582 + 1.25 NA Intergenic L1MEc|LINE|L1 -25846 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 218.75-2 chr1 62023925 62024140 + 1.25 NA intron (NM_001350145, intron 29 of 43) L1P4|LINE|L1 -54754 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 139.25-61 chr3 194377812 194377948 + 1.25 NA Intergenic Intergenic -8137 NM_001135057 131578 Hs.288467 NM_130830 ENSG00000172061 LRRC15 LIB leucine rich repeat containing 15 protein-coding 137-41 chr2 232687678 232687938 + 1.25 NA Intergenic Intergenic -9523 NR_103493 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 223 chr1 42349826 42350024 + 1.25 NA Intergenic L2a|LINE|L2 -14045 NM_001198850 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 163.25-47 chr3 165599546 165599789 + 1.25 NA Intergenic Intergenic 237756 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 187-29 chr2 192701982 192702314 + 1.25 NA Intergenic HAL1ME|LINE|L1 -47697 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 207.5-43 chr3 158567735 158568077 + 1.25 NA intron (NR_104147, intron 2 of 4) L2a|LINE|L2 3160 NR_104147 100996447 Hs.369810 NR_104147 ENSG00000243150 LOC100996447 - uncharacterized LOC100996447 ncRNA 159-62 chr8 98757020 98757226 + 1.25 NA intron (NM_006281, intron 3 of 10) MER74A|LTR|ERVL 68548 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 239.5-14 chr21 32146924 32147279 + 1.25 NA Intergenic Intergenic -60806 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 156.75-85 chr8 6454887 6455057 + 1.25 NA intron (NM_024596, intron 8 of 13) intron (NM_024596, intron 8 of 13) 47819 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 114.25-58 chr2 96156363 96156528 + 1.25 NA Intergenic Intergenic -11005 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 251.25 chr1 82658743 82659089 + 1.25 NA Intergenic AluSg4|SINE|Alu -244267 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 309.75-10 chr4 64828511 64828968 + 1.25 NA Intergenic Intergenic 175761 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 211.25-35 chr7 18107601 18107829 + 1.25 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) 19594 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 139-22 chr15 39497232 39497408 + 1.25 NA Intergenic LTR41B|LTR|ERVL -83759 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 176.25-38 chr21 28249004 28249244 + 1.25 NA Intergenic Intergenic -20457 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 148.5-110 chr8 102843979 102844222 + 1.25 NA intron (NM_001363010, intron 2 of 11) intron (NM_001363010, intron 2 of 11) 20063 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 206.75-31 chr7 49131018 49131318 + 1.25 NA Intergenic Intergenic 206621 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 270-20 chr4 57322618 57322895 + 1.25 NA Intergenic Intergenic -103116 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 131.5-56 chr3 41650905 41651113 + 1.25 NA intron (NR_136342, intron 28 of 34) L2a|LINE|L2 311094 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 282.5-10 chr16 76267762 76268098 + 1.25 NA Intergenic L1MA8|LINE|L1 -9471 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 156-60 chr6 144512622 144512911 + 1.25 NA intron (NM_007124, intron 34 of 73) AluJb|SINE|Alu 107111 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 132.75-10 chr1 216759159 216759390 + 1.25 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -35802 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 307-7 chr20 10589538 10589895 + 1.25 NA intron (NM_001009608, intron 4 of 7) L1ME4a|LINE|L1 59979 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 252.5-21 chr2 232770675 232770905 + 1.25 NA intron (NM_001172416, intron 2 of 2) intron (NM_001172416, intron 2 of 2) 5775 NM_002242 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 124.25-37 chr16 13936220 13936536 + 1.25 NA intron (NM_005236, intron 8 of 10) intron (NM_005236, intron 8 of 10) 16221 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 173.75-42 chr6 37858624 37858850 + 1.25 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 39010 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 223-24 chr20 50040914 50041107 + 1.25 NA non-coding (NR_051976, exon 2 of 2) non-coding (NR_051976, exon 2 of 2) 619 NR_051976 100887755 Hs.195705 NR_051976 TRERNA1 LINC00651|treRNA translation regulatory long non-coding RNA 1 ncRNA 237-11 chr14 40041418 40041756 + 1.25 NA Intergenic Intergenic -609087 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 227.5-53 chr7 107545827 107546157 + 1.25 NA intron (NM_181733, intron 5 of 20) L1M3e|LINE|L1 -17965 NR_073004 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 134-73 chr8 77948940 77949134 + 1.25 NA Intergenic Intergenic 498340 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 151.5-17 chr11 103678130 103678348 + 1.25 NA Intergenic Intergenic -171667 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 164.5-102 chr9 82106075 82106274 + 1.25 NA Intergenic Intergenic 117402 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 126.25-25 chr12 64374841 64374962 + 1.25 NA intron (NM_001099676, intron 1 of 10) HSMAR1|DNA|TcMar-Mariner 15857 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 284.25-5 chr15 85744490 85744948 + 1.25 NA 3' UTR (NM_001270546, exon 29 of 29) 3' UTR (NM_001270546, exon 29 of 29) 14006 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 236.75-12 chr2 80656088 80656303 + 1.25 NA Intergenic L1MB4|LINE|L1 342816 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 363.5-7 chr6 41072598 41072976 + 1.25 NA promoter-TSS (NM_001329692) promoter-TSS (NM_001329692) -173 NM_001329691 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 232.5-7 chr10 100770510 100770809 + 1.25 NA intron (NM_003988, intron 3 of 10) intron (NM_003988, intron 3 of 10) 24948 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 407.25-2 chr19 48324071 48324418 + 1.25 NA Intergenic L2a|LINE|L2 -1308 NM_001425 2014 Hs.9999 NM_001425 ENSG00000142227 EMP3 YMP epithelial membrane protein 3 protein-coding 131.25-10 chr1 185788897 185789044 + 1.25 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 54579 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 131.5-42 chr2 128002483 128002666 + 1.25 NA intron (NM_001330303, intron 7 of 19) L1MC4|LINE|L1 24721 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 175.75-10 chr14 71256875 71257113 + 1.25 NA Intergenic Intergenic -63482 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 190.75-25 chr17 66695496 66695714 + 1.25 NA intron (NM_002737, intron 8 of 16) intron (NM_002737, intron 8 of 16) -91467 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 228.25-9 chr10 111155622 111155950 + 1.25 NA Intergenic Intergenic 41495 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 293.5-19 chr5 60197419 60197814 + 1.25 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 175047 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 421.75 chr10 31695288 31695711 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 213427 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 297-19 chr5 120938423 120938921 + 1.25 NA Intergenic Intergenic -383878 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 207.75-13 chr14 59225722 59226062 + 1.25 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 37225 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 212.75-24 chr5 3961884 3962074 + 1.25 NA Intergenic Intergenic 366147 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 193.25-50 chr9 28303112 28303304 + 1.25 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 416097 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 165.5-60 chr3 12856931 12857185 + 1.25 NA Intergenic Intergenic -15476 NM_001007073 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 249.5 chr1 41196906 41197220 + 1.25 NA intron (NM_001172218, intron 1 of 15) L1MB4|LINE|L1 -34046 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 121.5-42 chr16 23012361 23012492 + 1.25 NA Intergenic MLT1E2|LTR|ERVL-MaLR 136844 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 333-12 chr6 20473242 20473548 + 1.25 NA intron (NM_001243076, intron 1 of 6) MIRb|SINE|MIR -61062 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 251.5-3 chr10 19174777 19175109 + 1.25 NA intron (NM_001142308, intron 13 of 39) intron (NM_001142308, intron 13 of 39) 126142 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 201.5-43 chr4 153128180 153128369 + 1.25 NA Intergenic Intergenic -24060 NM_001351056 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 159-40 chr20 36698499 36698758 + 1.25 NA intron (NM_022477, intron 2 of 14) Tigger2b_Pri|DNA|TcMar-Tigger 47462 NM_032013 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 187-39 chr3 122782378 122782569 + 1.25 NA intron (NM_001320728, intron 1 of 6) intron (NM_001320728, intron 1 of 6) 11358 NM_024610 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 132.25-66 chr4 40343768 40343958 + 1.25 NA intron (NM_017581, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 8530 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 144-74 chr8 112991796 112992143 + 1.25 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 348476 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 275.5-11 chr15 86034023 86034329 + 1.25 NA Intergenic Intergenic -45444 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 314.5-10 chr6 52532581 52533013 + 1.25 NA intron (NM_012288, intron 2 of 10) L1ME4a|LINE|L1 44263 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 115.75-25 chr15 60243944 60244154 + 1.25 NA Intergenic L1MCa|LINE|L1 153937 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 159-14 chr12 20874400 20874571 + 1.25 NA intron (NM_019844, intron 8 of 15) L1M3de|LINE|L1 51937 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 280.25-14 chr3 131248585 131248891 + 1.25 NA intron (NM_001353036, intron 14 of 14) L1PA15-16|LINE|L1 -113107 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 156.5-84 chr8 80852626 80852786 + 1.25 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 21762 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 203.75-12 chr15 62922553 62922757 + 1.25 NA Intergenic L1ME3A|LINE|L1 98698 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 171.75-57 chr8 32407771 32408001 + 1.25 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -32860 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 182.5 chr1 24920620 24920907 + 1.25 NA intron (NM_001320672, intron 4 of 6) intron (NM_001320672, intron 4 of 6) -1347 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 178.5-73 chr7 38274548 38274752 + 1.25 NA Intergenic Intergenic -1003 NM_001003806 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 140.75-62 chr7 68109697 68109836 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR 89513 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 208.5-44 chr20 21771267 21771591 + 1.25 NA Intergenic L2|LINE|L2 65765 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 161-65 chr8 82467237 82467421 + 1.25 NA Intergenic L1PB|LINE|L1 -444775 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 232-18 chr3 185935004 185935257 + 1.25 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 2884 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 418-5 chr5 127453403 127453888 + 1.25 NA intron (NM_001256545, intron 22 of 24) intron (NM_001256545, intron 22 of 24) -63995 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 161.5-71 chr5 99612572 99612734 + 1.25 NA Intergenic Intergenic 78663 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 137-11 chr10 83581815 83581972 + 1.25 NA Intergenic Intergenic 95196 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 304.75-4 chr16 56548194 56548592 + 1.25 NA Intergenic Intergenic -16680 NM_032935 84560 Hs.567624 NM_032935 ENSG00000102891 MT4 MT-4|MT-IV|MTIV metallothionein 4 protein-coding 150-5 chr1 47242089 47242441 + 1.25 NA Intergenic Intergenic -9930 NM_003189 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 154-30 chr19 36659745 36660044 + 1.25 NA intron (NM_001322821, intron 2 of 5) intron (NM_001322821, intron 2 of 5) 6943 NM_001322828 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 206.75-16 chr19 29408667 29408837 + 1.25 NA intron (NR_040029, intron 3 of 9) intron (NR_040029, intron 3 of 9) 117000 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 223-26 chr3 50859994 50860227 + 1.25 NA intron (NM_004947, intron 3 of 52) L1PA17|LINE|L1 185030 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 142.75-37 chr2 28319094 28319266 + 1.25 NA intron (NR_137438, intron 12 of 12) intron (NR_137438, intron 12 of 12) -8721 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 206.25-2 chr1 108657600 108657883 + 1.25 NA intron (NM_001102592, intron 2 of 7) intron (NM_001102592, intron 2 of 7) 3352 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 276.75-3 chr10 39478141 39478522 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 781735 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 161.25-54 chr3 152303335 152303725 + 1.25 NA intron (NM_207296, intron 1 of 7) intron (NM_207296, intron 1 of 7) 4125 NM_207297 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 116.5-88 chr5 30463392 30463516 + 1.25 NA Intergenic L1MEg|LINE|L1 582894 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 220-5 chr1 150109357 150109550 + 1.25 NA intron (NR_103998, intron 12 of 13) intron (NR_103998, intron 12 of 13) -39981 NM_001304722 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 172-28 chr3 53073753 53073900 + 1.25 NA Intergenic Intergenic -27753 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 231-26 chr3 175353416 175353722 + 1.25 NA intron (NM_207015, intron 5 of 13) MIR1_Amn|SINE|MIR -15971 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 171.75-36 chr3 43907871 43908065 + 1.25 NA Intergenic Intergenic -206244 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 185-2 chr1 81730265 81730562 + 1.25 NA intron (NM_001297704, intron 1 of 20) Charlie23a|DNA|hAT-Charlie 30643 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 247.5-33 chr6 123406538 123406829 + 1.25 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -32921 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 237.5 chr1 80965149 80965382 + 1.25 NA Intergenic Intergenic 323978 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 181.5-60 chr6 111519252 111519407 + 1.25 NA intron (NR_034109, intron 1 of 1) intron (NR_034109, intron 1 of 1) -35614 NM_002912 5980 Hs.232021 NM_002912 ENSG00000009413 REV3L POLZ|REV3 REV3 like, DNA directed polymerase zeta catalytic subunit protein-coding 208.5-27 chr16 60283967 60284217 + 1.25 NA Intergenic Intergenic 75701 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 355.25-2 chr11 76153721 76154183 + 1.25 NA Intergenic Charlie29a|DNA|hAT-Charlie 52550 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 312.5-11 chr3 118075391 118075875 + 1.25 NA Intergenic L1MA3|LINE|L1 -384708 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 149.75-23 chr19 32767346 32767530 + 1.25 NA intron (NM_001366102, intron 8 of 32) L1MEc|LINE|L1 47671 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 150-2 chr1 36736323 36736574 + 1.25 NA Intergenic Intergenic -253134 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 173.5-57 chr20 45179279 45179470 + 1.25 NA Intergenic L1M3a|LINE|L1 4472 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 246.75-30 chr6 161044067 161044285 + 1.25 NA intron (NM_005922, intron 2 of 26) intron (NM_005922, intron 2 of 26) 52407 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 123-63 chr7 79774374 79774555 + 1.25 NA Intergenic Intergenic 320504 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 227-23 chr5 26866177 26866397 + 1.25 NA Intergenic Intergenic 172299 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 180.25-45 chr4 39798486 39798792 + 1.25 NA Intergenic AluSx|SINE|Alu 100503 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 167.25-79 chr8 16137167 16137368 + 1.25 NA intron (NM_138715, intron 8 of 9) intron (NM_138715, intron 8 of 9) 49005 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 199.75-10 chr15 70766419 70766647 + 1.25 NA Intergenic Intergenic -2975 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 204.5-5 chr10 55709493 55709775 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity -81692 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 210-42 chr8 126444008 126444298 + 1.25 NA Intergenic L1ME1|LINE|L1 114325 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 167.75-49 chr4 60342483 60342704 + 1.25 NA Intergenic L1MEj|LINE|L1 -580026 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 237.5-29 chr3 150213778 150214081 + 1.25 NA Intergenic L1MB4|LINE|L1 -24590 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 221-18 chr18 8036782 8037279 + 1.25 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 330004 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 164-61 chr8 24460359 24460532 + 1.25 NA intron (NM_003817, intron 3 of 21) L1ME2z|LINE|L1 19419 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 180.25-49 chr4 91811593 91811761 + 1.25 NA Intergenic Intergenic 465625 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 286.25 chr1 35231019 35231344 + 1.25 NA Intergenic FAM|SINE|Alu -37528 NM_001350140 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 170.75-56 chr5 37612916 37613180 + 1.25 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 221774 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 116.25-42 chr18 77644767 77644936 + 1.25 NA Intergenic Intergenic 348876 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 171.75-14 chr12 24598199 24598350 + 1.25 NA Intergenic Intergenic -14106 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 118.25-65 chr3 195366188 195366340 + 1.25 NA intron (NM_012287, intron 4 of 22) intron (NM_012287, intron 4 of 22) 76756 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 158.75-30 chr2 75748814 75748996 + 1.25 NA Intergenic L1M5|LINE|L1 -37990 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 204.25-14 chr14 58209267 58209537 + 1.25 NA intron (NM_018477, intron 4 of 12) intron (NM_018477, intron 4 of 12) 9253 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 152.25-18 chr14 47328889 47329072 + 1.25 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 14266 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 236-25 chr3 50217103 50217474 + 1.25 NA exon (NM_006841, exon 8 of 16) exon (NM_006841, exon 8 of 16) -9780 NM_001282619 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 288.5 chr1 68082571 68082974 + 1.25 NA intron (NR_040077, intron 3 of 9) L1MC3|LINE|L1 -31141 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 144.5-22 chr11 77847080 77847252 + 1.25 NA intron (NM_001316962, intron 3 of 4) intron (NM_001316962, intron 3 of 4) 6028 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 190.25-26 chr21 15153926 15154099 + 1.25 NA Intergenic Intergenic -89012 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 179-14 chr11 82364714 82364941 + 1.25 NA intron (NR_120571, intron 1 of 7) L1MC3|LINE|L1 39086 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 147.25-11 chr12 40617303 40617467 + 1.25 NA Intergenic Intergenic -75054 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 137.75-22 chr14 53678994 53679153 + 1.25 NA Intergenic MamGypLTR1d|LTR|Gypsy 269411 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 150.75-79 chr9 81268282 81268436 + 1.25 NA Intergenic Intergenic 421176 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 211.5-6 chr11 82616928 82617174 + 1.25 NA Intergenic Intergenic 116813 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 173.75-53 chr8 87777445 87777697 + 1.25 NA Intergenic Intergenic 96444 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 158.25-26 chr2 65848598 65848744 + 1.25 NA Intergenic L2|LINE|L2 -416072 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 164-55 chr7 8651834 8652043 + 1.25 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 218329 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 176.75-55 chrUn_KI270438v1 112287 112496 + 1.25 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 178.5-96 chr9 71867287 71867458 + 1.25 NA intron (NM_001025780, intron 3 of 3) intron (NM_001025780, intron 3 of 3) 43873 NM_001025780 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 223.5-30 chr15 71574361 71574718 + 1.25 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 27303 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 190.25-30 chr22 28578516 28578882 + 1.25 NA intron (NM_001145418, intron 2 of 22) L1M1|LINE|L1 101166 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 118.5-66 chr22 29203869 29204027 + 1.25 NA Intergenic Intergenic -1948 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 271-4 chr12 16554133 16554446 + 1.25 NA intron (NM_001001395, intron 3 of 3) intron (NM_001001395, intron 3 of 3) 51090 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 313-10 chr2 162818294 162818692 + 1.25 NA intron (NM_033272, intron 2 of 15) L1ME2|LINE|L1 20274 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 149-48 chr5 133635102 133635253 + 1.25 NA Intergenic Intergenic -22636 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 134.5-15 chr11 74372389 74372514 + 1.25 NA intron (NM_173582, intron 2 of 13) intron (NM_173582, intron 2 of 13) 25982 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 209.75-13 chr16 21594772 21595014 + 1.25 NA intron (NR_110930, intron 2 of 2) MIRc|SINE|MIR -2328 NM_001288660 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 118-68 chr8 58446386 58446565 + 1.25 NA intron (NM_001077619, intron 7 of 7) intron (NM_001077619, intron 7 of 7) 35114 NR_156456 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 304.75-9 chr4 128589352 128589617 + 1.25 NA Intergenic Intergenic 161468 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 118-81 chr9 123968710 123968894 + 1.25 NA Intergenic L1MB3|LINE|L1 -38664 NM_001352964 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 256.75-3 chr14 60080149 60080386 + 1.25 NA Intergenic Intergenic -11644 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 236.75-22 chr9 525553 525924 + 1.25 NA intron (NM_001354331, intron 1 of 10) intron (NM_001354331, intron 1 of 10) 21183 NM_001354332 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 118.75-54 chr2 125719444 125719562 + 1.25 NA Intergenic Intergenic 398482 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 139.5-33 chr17 19926046 19926252 + 1.25 NA intron (NM_001330152, intron 9 of 13) L1MB7|LINE|L1 51679 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 202.25-10 chr14 37339081 37339322 + 1.25 NA intron (NM_138731, intron 10 of 13) L1ME2|LINE|L1 141264 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 185.25-48 chr7 26592617 26592819 + 1.25 NA Intergenic Intergenic -45153 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 261.75-22 chr5 106785790 106786006 + 1.25 NA Intergenic LTR88c|LTR|Gypsy? 225116 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 151.75-20 chr12 85552532 85552727 + 1.25 NA Intergenic Intergenic 272409 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 148.75-69 chr8 48760625 48760767 + 1.25 NA Intergenic L1MDa|LINE|L1 -25385 NM_001142857 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 162.5-44 chr2 199993880 199994298 + 1.25 NA Intergenic Intergenic -38598 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 209.75-2 chr10 52212614 52212921 + 1.25 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 101361 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 309-17 chr5 139760573 139760947 + 1.25 NA Intergenic Intergenic -14537 NR_105052 101929696 Hs.147408 NR_105052 ENSG00000249131 PSD2-AS1 - PSD2 antisense RNA 1 ncRNA 175.75-24 chr20 47862301 47862519 + 1.25 NA Intergenic AluJr|SINE|Alu -75794 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 158-51 chr4 176072652 176072909 + 1.25 NA intron (NM_181265, intron 1 of 28) intron (NM_181265, intron 1 of 28) 6939 NM_170710 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 116.75-37 chr19 28813409 28813578 + 1.25 NA Intergenic L1MD|LINE|L1 -85799 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 209.25-52 chr8 137435700 137435993 + 1.25 NA Intergenic Intergenic -22258 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 170.25-5 chr10 29881346 29881518 + 1.25 NA Intergenic Intergenic -144496 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 197.75-40 chr6 45091753 45091947 + 1.25 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 105920 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 149-23 chr2 34729747 34729905 + 1.25 NA Intergenic MIRb|SINE|MIR 52269 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 281.25-15 chr8 109867175 109867641 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 108363 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 145-72 chrX 133665005 133665147 + 1.25 NA intron (NM_001164619, intron 4 of 6) L1ME4b|LINE|L1 -232367 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 316-4 chr10 102891865 102892232 + 1.25 NA intron (NM_020682, intron 10 of 10) MER4B-int|LTR|ERV1 22578 NM_020682 57412 Hs.720370 NM_020682 ENSG00000214435 AS3MT CYT19 arsenite methyltransferase protein-coding 219.25-30 chr6 44978098 44978451 + 1.25 NA intron (NM_181356, intron 8 of 12) MIRb|SINE|MIR 219496 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 114.75-71 chr4 70138072 70138214 + 1.25 NA intron (NR_033311, intron 2 of 7) intron (NR_033311, intron 2 of 7) 4539 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 119-3 chr1 92728894 92729075 + 1.25 NA intron (NM_001350198, intron 2 of 19) MER44C|DNA|TcMar-Tigger 56124 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 130-15 chr11 106434383 106434570 + 1.25 NA Intergenic L1MEd|LINE|L1 183069 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 208-8 chr12 15133809 15134034 + 1.25 NA intron (NM_032918, intron 2 of 4) L1MC1|LINE|L1 -18002 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 299.5 chr1 37759271 37759742 + 1.25 NA TTS (NM_173641) TTS (NM_173641) 5614 NM_001099439 284656 Hs.129435 NM_173641 ENSG00000183317 EPHA10 - EPH receptor A10 protein-coding 409.5-5 chr8 113478855 113479369 + 1.25 NA Intergenic LOR1-int|LTR|ERV1 -42173 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 182.25-2 chr1 229336827 229337084 + 1.25 NA intron (NM_145257, intron 2 of 3) HAL1|LINE|L1 6092 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 214-16 chr13 60678372 60678614 + 1.25 NA intron (NR_047003, intron 1 of 4) MLT1J1|LTR|ERVL-MaLR 5538 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 176-38 chr5 147253234 147253412 + 1.25 NA intron (NM_001112724, intron 2 of 12) intron (NM_001112724, intron 2 of 12) 18297 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 155-32 chr21 30379975 30380119 + 1.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR -4669 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 188.75-14 chr15 88836392 88836673 + 1.25 NA intron (NM_001369268, intron 2 of 18) intron (NM_001369268, intron 2 of 18) 33089 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 139.75-21 chr12 53182689 53182886 + 1.25 NA intron (NM_001004304, intron 2 of 6) intron (NM_001004304, intron 2 of 6) -1862 NM_001244705 51380 Hs.279815 NM_015989 ENSG00000139631 CSAD CSD|PCAP cysteine sulfinic acid decarboxylase protein-coding 219.75-25 chr3 29363378 29363626 + 1.25 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 82190 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 123.5-93 chr6 16055779 16055933 + 1.25 NA Intergenic Intergenic -73230 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 136.25-59 chr4 32280025 32280181 + 1.25 NA Intergenic L1M2|LINE|L1 -70935 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 162-60 chr8 84704882 84705087 + 1.25 NA promoter-TSS (NM_001287244) promoter-TSS (NM_001287244) -943 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 239.75-31 chr8 115491678 115491900 + 1.25 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 176224 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 149.25-57 chr6 48048841 48048996 + 1.25 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 19771 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 126.75-43 chr2 110160342 110160530 + 1.25 NA intron (NM_207181, intron 10 of 19) intron (NM_207181, intron 10 of 19) -43870 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 237.75-42 chr6 96561950 96562167 + 1.25 NA promoter-TSS (NM_001322466) promoter-TSS (NM_001322466) -467 NM_020482 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 162.75-25 chr16 48520821 48521024 + 1.25 NA Intergenic L2b|LINE|L2 89258 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 124-27 chr2 146913922 146914162 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 326985 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 149.5-3 chr1 18582376 18582547 + 1.25 NA Intergenic L2b|LINE|L2 -48385 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 188.25-36 chr3 94842829 94843067 + 1.25 NA Intergenic Intergenic -95315 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 174.75-36 chr3 183968580 183968848 + 1.25 NA intron (NM_001320032, intron 11 of 29) intron (NM_001320032, intron 11 of 29) -37624 NR_046570 100873982 Hs.570696 NR_046570 ENSG00000223882 ABCC5-AS1 - ABCC5 antisense RNA 1 ncRNA 145.75-52 chr3 1661095 1661237 + 1.25 NA Intergenic L1P2|LINE|L1 -437637 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 343-13 chrX 110689062 110689629 + 1.25 NA intron (NR_159734, intron 9 of 12) AluJb|SINE|Alu 106472 NM_145234 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 228-5 chr10 110284149 110284406 + 1.25 NA intron (NM_001008541, intron 4 of 4) intron (NM_001008541, intron 4 of 4) 20643 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 153.5-19 chr11 80597955 80598098 + 1.25 NA Intergenic Intergenic 164777 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 191.25-29 chr17 52547798 52548082 + 1.25 NA Intergenic L1M5|LINE|L1 157418 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 218.75-12 chr13 23686879 23687211 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger 107685 NM_001354985 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 186-18 chr16 78799462 78799686 + 1.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 699920 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 241-4 chr1 157650394 157650778 + 1.25 NA Intergenic Intergenic 50183 NM_052939 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 202-25 chr7 1041759 1042087 + 1.25 NA intron (NM_001134395, intron 2 of 4) intron (NM_001134395, intron 2 of 4) -2623 NM_001303473 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 141-7 chr1 197791231 197791422 + 1.25 NA Intergenic L1M3e|LINE|L1 -15846 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 162.25-14 chr15 83846115 83846427 + 1.25 NA intron (NM_207517, intron 7 of 29) MIR|SINE|MIR 192148 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 260.25-25 chr8 106955593 106955887 + 1.25 NA Intergenic Intergenic -185496 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 192.5-56 chr8 30482005 30482274 + 1.25 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -96738 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 200-8 chr11 25974812 25975102 + 1.25 NA Intergenic Tigger11a|DNA|TcMar-Tigger -214166 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 142-24 chr18 7268521 7268670 + 1.25 NA Intergenic L2a|LINE|L2 37491 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 137.75-40 chr18 40221279 40221444 + 1.25 NA Intergenic MER34-int|LTR|ERV1 155075 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 182.75-50 chr6 152625508 152625742 + 1.25 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 11226 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 202-12 chr20 32482337 32482626 + 1.25 NA intron (NM_001256798, intron 4 of 10) CpG 1009 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 269.25-20 chr5 11965172 11965572 + 1.25 NA Intergenic Intergenic -60926 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 298.25-15 chr8 56069577 56069837 + 1.25 NA 3' UTR (NM_001146227, exon 5 of 6) 3' UTR (NM_001146227, exon 5 of 6) 4194 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 176.5-57 chr21 24188265 24188429 + 1.25 NA Intergenic LTR48B|LTR|ERV1 133030 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 284.25-18 chr4 33790178 33790631 + 1.25 NA Intergenic MIR|SINE|MIR 249489 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 151-69 chr8 13026577 13026762 + 1.25 NA 3' UTR (NM_001099677, exon 2 of 2) 3' UTR (NM_001099677, exon 2 of 2) 14405 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 220.75-2 chr1 43806194 43806466 + 1.25 NA intron (NM_001270459, intron 3 of 11) intron (NM_001270459, intron 3 of 11) -32292 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 341.5 chr1 147366779 147367265 + 1.25 NA Intergenic L1PA16|LINE|L1 123880 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 121.5-89 chr4 72710260 72710456 + 1.25 NA Intergenic Intergenic -141137 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 115.75-98 chr8 137029853 137029987 + 1.25 NA Intergenic Intergenic 383668 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 163.75-60 chr6 21028653 21028803 + 1.25 NA intron (NM_017774, intron 11 of 15) MIRb|SINE|MIR 483164 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 159.25-15 chr13 57571767 57572080 + 1.25 NA Intergenic AluJb|SINE|Alu -59821 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 229.75-2 chr1 105626961 105627171 + 1.25 NA Intergenic Intergenic -8131 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 148.75-52 chr5 9602791 9602932 + 1.25 NA Intergenic Intergenic 27490 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 145.75-42 chr2 182792537 182792736 + 1.25 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 74001 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 194.75-7 chr11 105577305 105577585 + 1.25 NA Intergenic Charlie7|DNA|hAT-Charlie -32628 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 204.25-54 chr8 131398167 131398467 + 1.25 NA Intergenic L1M3|LINE|L1 -357408 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 179.75-43 chr5 28916015 28916227 + 1.25 NA Intergenic Intergenic -10749 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 146.25-36 chr2 74944364 74944580 + 1.25 NA Intergenic Intergenic -14171 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 198-21 chr17 67679345 67679626 + 1.25 NA intron (NM_012417, intron 8 of 8) MER91A|DNA|hAT-Tip100 -38348 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 214.5-60 chr8 123644084 123644427 + 1.25 NA TTS (NM_001081675) TTS (NM_001081675) 9546 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 294.5-18 chr7 78284006 78284421 + 1.25 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -63029 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 196.5-2 chr1 12190012 12190295 + 1.25 NA intron (NM_001066, intron 2 of 9) intron (NM_001066, intron 2 of 9) -1560 NR_039775 100616438 NR_039775 ENSG00000263676 MIR4632 - microRNA 4632 ncRNA 128.75-88 chr8 75612521 75612637 + 1.25 NA Intergenic Intergenic 72611 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 199.5-41 chr5 9072376 9072643 + 1.25 NA intron (NM_003966, intron 16 of 22) L1ME1|LINE|L1 -18614 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 178.5-24 chr17 77691455 77691668 + 1.25 NA Intergenic Intergenic 36998 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 171.25-16 chr14 67703986 67704131 + 1.25 NA intron (NM_152443, intron 1 of 8) intron (NM_152443, intron 1 of 8) 2172 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 183.75-52 chr7 68388245 68388488 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR 368113 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 184.25-35 chr4 125824743 125825000 + 1.25 NA Intergenic Intergenic 317612 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 128.75-75 chr5 62530707 62530937 + 1.25 NA intron (NM_016338, intron 22 of 29) intron (NM_016338, intron 22 of 29) -47913 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 123.25-15 chr11 26903606 26903765 + 1.25 NA Intergenic MIRb|SINE|MIR -90427 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 125-40 chr17 74274387 74274526 + 1.25 NA intron (NM_001172810, intron 1 of 13) intron (NM_001172810, intron 1 of 13) 222 NR_148379 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 194.75-40 chr6 62236089 62236333 + 1.25 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 50014 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 115.5-31 chr15 42389608 42389873 + 1.25 NA intron (NM_173087, intron 5 of 20) intron (NM_173087, intron 5 of 20) -12650 NM_173088 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 313.25-6 chrUn_GL000216v2 15856 16264 + 1.25 NA NA (CATTC)n|Satellite|Satellite NA NA 294.75-2 chr1 164510227 164510655 + 1.25 NA Intergenic L2|LINE|L2 -48919 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 189.75-28 chr22 42261141 42261378 + 1.25 NA intron (NM_005650, intron 1 of 5) L1ME2|LINE|L1 -8494 NR_036498 388906 Hs.730075 NR_036498 OGFRP1 - opioid growth factor receptor pseudogene 1 pseudo 217.75-14 chr15 67484120 67484344 + 1.25 NA intron (NR_147832, intron 15 of 17) AluJb|SINE|Alu 36741 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 194.5-86 chrX 69982439 69982740 + 1.25 NA intron (NM_001005609, intron 2 of 7) intron (NM_001005609, intron 2 of 7) -40268 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 161.5-66 chr4 81632786 81633005 + 1.25 NA Intergenic Intergenic -160988 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 119.5-31 chr13 23650479 23650723 + 1.25 NA intron (NM_001354985, intron 5 of 8) L1MB5|LINE|L1 71241 NM_001354985 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 159.25-18 chr14 31364555 31364756 + 1.25 NA intron (NM_015473, intron 13 of 35) AluJo|SINE|Alu 55895 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 206-12 chr14 42199331 42199726 + 1.25 NA Intergenic AluSx|SINE|Alu 592672 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 278.75-10 chr4 101681150 101681422 + 1.25 NA Intergenic L1MC1|LINE|L1 -109321 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 216.25-11 chr14 54622859 54623139 + 1.25 NA intron (NM_015589, intron 1 of 11) L2b|LINE|L2 55387 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 142.75-10 chr1 211061269 211061548 + 1.25 NA intron (NM_002238, intron 5 of 10) L1MA3|LINE|L1 71966 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 168.5-71 chr7 123113398 123113604 + 1.25 NA TTS (NM_001324400) TTS (NM_001324400) 86468 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 238.25-2 chr10 80346031 80346441 + 1.25 NA intron (NM_001270042, intron 1 of 3) L1MA10|LINE|L1 1491 NM_001270042 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 121.5-101 chr6 54997154 54997334 + 1.25 NA Intergenic Intergenic -109216 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 288.25-9 chr2 197327069 197327472 + 1.25 NA Intergenic Intergenic -16490 NM_001367496 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 172.75-10 chr14 83825802 83825974 + 1.25 NA Intergenic Intergenic 1183256 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 238-29 chr5 104962590 104963083 + 1.25 NA Intergenic Intergenic -136638 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 160.5-20 chr14 64357021 64357260 + 1.25 NA Intergenic Intergenic -9529 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 164.75-43 chr3 87894730 87894969 + 1.25 NA intron (NM_001322210, intron 2 of 2) MIR|SINE|MIR -87727 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 143.75-56 chr21 26532876 26533035 + 1.25 NA intron (NR_135515, intron 2 of 3) Tigger4|DNA|TcMar-Tigger 40331 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 362-2 chr3 32514985 32515290 + 1.25 NA Intergenic Intergenic -8748 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 226.5-9 chr11 10883707 10883904 + 1.25 NA Intergenic MLT1A1|LTR|ERVL-MaLR 25588 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 219 chr1 11868683 11869016 + 1.25 NA Intergenic LTR33|LTR|ERVL -9904 NM_002521 4879 Hs.219140 NM_002521 ENSG00000120937 NPPB BNP natriuretic peptide B protein-coding 144.75-9 chr10 15846451 15846584 + 1.25 NA intron (NM_024948, intron 2 of 14) intron (NM_024948, intron 2 of 14) 13990 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 223.25-35 chr9 86619946 86620375 + 1.25 NA Intergenic L1MB5|LINE|L1 -265750 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 227.5-8 chr1 209523326 209523635 + 1.25 NA Intergenic L2b|LINE|L2 -60234 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 155.5-30 chr12 112970602 112970887 + 1.25 NA 3' UTR (NM_006187, exon 16 of 16) 3' UTR (NM_006187, exon 16 of 16) -7775 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 278.75-17 chr9 76087113 76087565 + 1.25 NA intron (NR_120409, intron 7 of 19) intron (NR_120409, intron 7 of 19) 196666 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 163-24 chr2 120593429 120593633 + 1.25 NA Intergenic MamTip2|DNA|hAT-Tip100 -127182 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 260 chr1 85091376 85091616 + 1.25 NA intron (NM_145172, intron 8 of 22) intron (NM_145172, intron 8 of 22) 29169 NM_145172 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 261-27 chr2 158372052 158372476 + 1.25 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 84489 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 210.25-42 chr7 1132279 1132629 + 1.25 NA intron (NM_001134396, intron 1 of 4) AluJb|SINE|Alu 5793 NM_001318252 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 236.25-9 chr14 65830939 65831206 + 1.25 NA Intergenic Intergenic 359970 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 251.75-10 chr22 49661862 49662112 + 1.25 NA Intergenic Intergenic -4468 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 145.75-12 chr14 67373240 67373482 + 1.25 NA intron (NM_004094, intron 2 of 7) intron (NM_004094, intron 2 of 7) 13033 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 195-7 chr10 70423793 70424081 + 1.25 NA 3' UTR (NM_004096, exon 3 of 3) 3' UTR (NM_004096, exon 3 of 3) 17744 NM_018055 4838 Hs.370414 NM_018055 ENSG00000156574 NODAL HTX5 nodal growth differentiation factor protein-coding 156.75-15 chr11 5961863 5962048 + 1.25 NA Intergenic L1MA8|LINE|L1 6539 NM_001146033 390084 Hs.719888 NM_001146033 ENSG00000188691 OR56A5 OR56A5P olfactory receptor family 56 subfamily A member 5 protein-coding 137.5-109 chr7 145467940 145468124 + 1.25 NA Intergenic L1MC5a|LINE|L1 -631979 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 267.25-3 chr12 99496473 99496801 + 1.25 NA intron (NM_152788, intron 10 of 25) intron (NM_152788, intron 10 of 25) -151116 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 146.5-52 chr2 159032203 159032354 + 1.25 NA intron (NM_001350063, intron 2 of 24) intron (NM_001350063, intron 2 of 24) 63638 NR_146421 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 153.75-20 chr12 109356492 109356704 + 1.25 NA intron (NR_120462, intron 2 of 2) intron (NR_120462, intron 2 of 2) 2890 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 193.5-6 chr10 24229232 24229515 + 1.25 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 20235 NM_019590 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 145.5-59 chr22 19799152 19799309 + 1.25 NA intron (NM_053004, intron 7 of 7) intron (NM_053004, intron 7 of 7) 42527 NM_005992 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 247.25-28 chr7 158933911 158934237 + 1.25 NA intron (NM_001350918, intron 23 of 26) intron (NM_001350918, intron 23 of 26) -74280 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 171.75-37 chr3 82082177 82082591 + 1.25 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 96242 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 220.5-10 chr11 36272192 36272510 + 1.25 NA TTS (NM_014186) TTS (NM_014186) 17073 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 116.75-57 chr5 3858266 3858363 + 1.25 NA Intergenic L2a|LINE|L2 262482 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 207.25-26 chr5 60436418 60436633 + 1.25 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -51188 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 279.5-8 chr20 9445327 9445731 + 1.25 NA intron (NM_000933, intron 28 of 35) intron (NM_000933, intron 28 of 35) -68829 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 178.75-12 chr15 57126069 57126264 + 1.25 NA intron (NM_207038, intron 5 of 19) AluSx3|SINE|Alu -93264 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 154.75-37 chr20 46489798 46489938 + 1.25 NA Intergenic Intergenic 23704 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 215.25-21 chr3 117403445 117403808 + 1.25 NA Intergenic Intergenic 287299 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 234.75-20 chr19 36005091 36005317 + 1.25 NA intron (NM_001039876, intron 6 of 7) MLT1K|LTR|ERVL-MaLR 3609 NM_001039876 163183 Hs.436743 NM_153233 ENSG00000181392 SYNE4 C19orf46|DFNB76|KASH4|Nesp4 spectrin repeat containing nuclear envelope family member 4 protein-coding 226.25-8 chr14 31463787 31464115 + 1.25 NA Intergenic Helitron3Na_Mam|RC|Helitron -6445 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 180.25-61 chr7 25907567 25907754 + 1.25 NA Intergenic Intergenic 42326 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 252.75-27 chr6 64532704 64533000 + 1.25 NA intron (NM_001292009, intron 26 of 43) L1MEf|LINE|L1 726016 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 136.75-81 chr5 83254487 83254687 + 1.25 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 177040 NM_001318013 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 164.5-33 chr18 61679687 61679930 + 1.25 NA Intergenic Intergenic -68368 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 171.5-16 chr12 17134181 17134422 + 1.25 NA Intergenic Intergenic 145554 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 113.75-8 chr1 89680958 89681085 + 1.25 NA intron (NM_032270, intron 1 of 2) intron (NM_032270, intron 1 of 2) 47901 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 208-35 chr5 73377579 73377826 + 1.25 NA Intergenic Intergenic 39796 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 130.25-90 chr8 132101226 132101354 + 1.25 NA intron (NM_001145095, intron 2 of 15) intron (NM_001145095, intron 2 of 15) 3975 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 215.5-5 chr10 58099167 58099392 + 1.25 NA Intergenic LTR49|LTR|ERV1 168615 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 228-28 chr3 111847281 111847627 + 1.25 NA intron (NM_001134437, intron 2 of 17) intron (NM_001134437, intron 2 of 17) -11726 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 144-77 chr9 33851568 33851763 + 1.25 NA intron (NM_017811, intron 1 of 4) L1MC4|LINE|L1 34505 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 214.5-5 chr10 50930431 50930734 + 1.25 NA Intergenic L1ME4b|LINE|L1 -44907 NM_001198818 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 158.25-19 chr15 87415324 87415522 + 1.25 NA Intergenic Intergenic -161506 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 219-27 chr4 112932097 112932374 + 1.25 NA intron (NM_001354275, intron 2 of 43) AluSx|SINE|Alu 71248 NM_001354271 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 170-33 chr3 105631999 105632196 + 1.25 NA Intergenic Intergenic 235494 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 160.25-25 chr17 60715310 60715546 + 1.25 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 37577 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 196.75-39 chr6 64147220 64147486 + 1.25 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 340517 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 162-4 chr1 221231457 221231684 + 1.25 NA Intergenic Intergenic 104726 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 233.5-3 chr1 90444780 90445069 + 1.25 NA Intergenic L1MD2|LINE|L1 -212826 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 145.5-32 chr16 47084931 47085134 + 1.25 NA intron (NM_001201477, intron 8 of 8) MER1A|DNA|hAT-Charlie 58913 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 174.5-13 chr11 46283565 46283806 + 1.25 NA intron (NM_052854, intron 1 of 11) AluJr|SINE|Alu 6023 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 119.75-18 chr12 47453253 47453402 + 1.25 NA Intergenic Intergenic 38319 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 130.25-74 chr5 52363502 52363619 + 1.25 NA Intergenic Intergenic 355529 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 255-5 chr11 130509552 130509954 + 1.25 NA Intergenic Intergenic 60779 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 163.75-11 chr10 73506586 73506812 + 1.25 NA non-coding (NR_132103, exon 5 of 5) non-coding (NR_132103, exon 5 of 5) -10675 NM_001142354 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 151-44 chr3 160344131 160344352 + 1.25 NA intron (NM_001190242, intron 7 of 18) L1M4|LINE|L1 39525 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 417.75-3 chr5 112340875 112341509 + 1.25 NA intron (NM_001347887, intron 1 of 23) L2a|LINE|L2 78085 NM_001347888 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 218-11 chr14 28832930 28833287 + 1.25 NA Intergenic Intergenic -47321 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 288.25-4 chr14 67645089 67645458 + 1.25 NA intron (NM_001172, intron 3 of 7) FLAM_A|SINE|Alu 25353 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 235-18 chr17 83187988 83188413 + 1.25 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -38697 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 170.75-76 chr8 132729260 132729473 + 1.25 NA intron (NM_144649, intron 5 of 9) UCON51|LTR?|LTR? 31216 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 260.5-30 chr7 93531883 93532395 + 1.25 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 27671 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 157.75-51 chr3 37822116 37822287 + 1.25 NA 3' UTR (NM_002207, exon 28 of 28) 3' UTR (NM_002207, exon 28 of 28) 39579 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 157.25-63 chr8 91287543 91287747 + 1.25 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 38326 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 195-4 chr1 180894520 180894897 + 1.25 NA Intergenic Intergenic -18189 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 128-2 chr1 229430519 229430670 + 1.25 NA TTS (NM_001100) TTS (NM_001100) 3502 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 262.5-23 chr2 204171759 204172049 + 1.25 NA Intergenic Intergenic 235156 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 189.75-23 chr2 194982170 194982336 + 1.25 NA Intergenic L1MC5a|LINE|L1 251658 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 178.25-27 chr2 62112643 62112846 + 1.25 NA intron (NM_001321781, intron 2 of 2) MIRb|SINE|MIR -83371 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 170.75-69 chr7 90819308 90819499 + 1.25 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 109587 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 144.25-10 chr10 52536237 52536377 + 1.25 NA Intergenic Intergenic -65774 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 133.5-26 chr14 56020575 56020789 + 1.25 NA Intergenic Intergenic -97729 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 117.5-13 chr11 59716204 59716366 + 1.25 NA Intergenic Intergenic -2440 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 211-23 chr4 46308936 46309167 + 1.25 NA intron (NM_001114175, intron 5 of 8) intron (NM_001114175, intron 5 of 8) 80328 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 153.5-43 chr2 51886918 51887101 + 1.25 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -483639 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 332 chr1 161381923 161382258 + 1.25 NA Intergenic L1MC5|LINE|L1 -14207 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 140.25-77 chr6 55692643 55692802 + 1.25 NA Intergenic L1M5|LINE|L1 -113508 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 220.75-32 chr8 104586333 104586674 + 1.25 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 2521 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 237.25-27 chr6 20545739 20546131 + 1.25 NA intron (NM_017774, intron 2 of 15) L1MC5a|LINE|L1 11478 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 185-9 chr11 129398761 129399049 + 1.25 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 23057 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 168.5-28 chr14 87543936 87544199 + 1.25 NA Intergenic Intergenic 111227 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 157.75-34 chr17 59195107 59195366 + 1.25 NA intron (NM_018304, intron 6 of 9) intron (NM_018304, intron 6 of 9) -14774 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 179.75-15 chr14 64177480 64177644 + 1.25 NA intron (NM_015180, intron 96 of 114) intron (NM_015180, intron 96 of 114) -36582 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 137.75-54 chr3 70257098 70257239 + 1.25 NA intron (NM_001364676, intron 2 of 4) intron (NM_001364676, intron 2 of 4) 55470 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 193-19 chr14 52648997 52649177 + 1.25 NA intron (NM_014584, intron 13 of 15) intron (NM_014584, intron 13 of 15) 46471 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 186-43 chr5 148954802 148955047 + 1.25 NA Intergenic Intergenic 107485 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 198.5-56 chr8 121934988 121935247 + 1.25 NA Intergenic L1M4a1|LINE|L1 -293677 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 205.25-24 chr3 57670252 57670454 + 1.25 NA intron (NM_152678, intron 3 of 19) MER34A|LTR|ERV1 22724 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 170-6 chr11 72324698 72324957 + 1.25 NA intron (NM_030813, intron 7 of 16) intron (NM_030813, intron 7 of 16) -80651 NM_005169 401 Hs.731115 NM_005169 ENSG00000165462 PHOX2A ARIX|CFEOM2|FEOM2|NCAM2|PMX2A paired like homeobox 2A protein-coding 199-7 chr10 2458233 2458488 + 1.25 NA intron (NR_136146, intron 1 of 2) intron (NR_136146, intron 1 of 2) 43102 NR_136146 105376351 Hs.343482 NR_136146 LINC02645 - long intergenic non-protein coding RNA 2645 ncRNA 194.25-5 chr10 62247735 62247969 + 1.25 NA intron (NM_001282941, intron 2 of 4) intron (NM_001282941, intron 2 of 4) 20992 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 114.25-71 chr22 44701145 44701285 + 1.25 NA promoter-TSS (NM_181333) promoter-TSS (NM_181333) -983 NM_181334 553158 Hs.102336 NM_181334 ENSG00000248405 PRR5-ARHGAP8 - PRR5-ARHGAP8 readthrough protein-coding 182.75-29 chr22 24814455 24814657 + 1.25 NA intron (NM_001098498, intron 2 of 23) intron (NM_001098498, intron 2 of 23) 8335 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 312.5-2 chr10 97420601 97420966 + 1.25 NA intron (NR_157582, intron 1 of 1) AluJb|SINE|Alu 5274 NR_157582 644215 NR_157582 LOC644215 - uncharacterized LOC644215 ncRNA 296.5-14 chr2 38576944 38577284 + 1.25 NA intron (NM_138394, intron 7 of 12) intron (NM_138394, intron 7 of 12) 25814 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 168.5-73 chr8 79281500 79281770 + 1.25 NA Intergenic Intergenic -50553 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 231.75-23 chr3 158490275 158490535 + 1.25 NA intron (NM_001271838, intron 7 of 9) intron (NM_001271838, intron 7 of 9) -36303 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 295.5-5 chr11 100254766 100255145 + 1.25 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -432333 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 141.5-10 chr1 241272997 241273173 + 1.25 NA intron (NM_001282778, intron 2 of 16) L1MEf|LINE|L1 82741 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 165-12 chr11 79767126 79767313 + 1.25 NA Intergenic Intergenic -326189 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 173-8 chr10 115383447 115383639 + 1.25 NA intron (NM_207303, intron 19 of 28) intron (NM_207303, intron 19 of 28) 290178 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 151.5-7 chr1 222272709 222272943 + 1.25 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 275278 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 266-4 chr11 112802809 112803120 + 1.25 NA Intergenic L1MA8|LINE|L1 -158456 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 151-11 chr12 48194147 48194357 + 1.25 NA Intergenic L3|LINE|CR1 9040 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 220.5-17 chr16 77846168 77846405 + 1.25 NA intron (NM_020927, intron 3 of 8) intron (NM_020927, intron 3 of 8) 57722 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 349.75-6 chr4 32775149 32775494 + 1.25 NA Intergenic Intergenic 424283 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 188.25-15 chr16 54882906 54883252 + 1.25 NA Intergenic AluJo|SINE|Alu -34846 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 235.5-31 chr20 57139998 57140319 + 1.25 NA Intergenic AluJb|SINE|Alu -73538 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 197.5-40 chr20 47328806 47329098 + 1.25 NA intron (NM_001281774, intron 3 of 23) intron (NM_001281774, intron 3 of 23) 10450 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 206.25-12 chr14 42107843 42108043 + 1.25 NA Intergenic L1PA15-16|LINE|L1 501087 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 210 chr1 97860610 97860872 + 1.25 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 60318 NM_000110 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 251.25-14 chr19 43972064 43972324 + 1.25 NA Intergenic L1PA11|LINE|L1 -11976 NM_001260486 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 140.5-30 chr14 87308113 87308249 + 1.25 NA Intergenic Intergenic 347113 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 133.75-60 chr4 97046021 97046182 + 1.25 NA Intergenic Intergenic -320825 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 155.5-34 chr15 90974622 90974803 + 1.25 NA exon (NM_003981, exon 10 of 15) exon (NM_003981, exon 10 of 15) 8343 NR_051984 100507118 Hs.366401 NR_051984 ENSG00000258725 PRC1-AS1 - PRC1 antisense RNA 1 ncRNA 115-67 chr6 80286639 80286817 + 1.25 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 180057 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 175.5-38 chr18 7666366 7666599 + 1.25 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 99166 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 235.75-13 chr2 132603054 132603412 + 1.25 NA intron (NM_001508, intron 1 of 1) L1MA5|LINE|L1 66972 NM_144586 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 165.75-78 chr9 96569355 96569487 + 1.25 NA intron (NR_147239, intron 1 of 14) intron (NR_147239, intron 1 of 14) -2445 NM_001351570 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 180.25-18 chr14 69507163 69507362 + 1.25 NA intron (NM_001161498, intron 6 of 12) L1MC1|LINE|L1 22534 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 179.25-29 chr3 15236800 15237108 + 1.25 NA intron (NM_014296, intron 12 of 20) Tigger3b|DNA|TcMar-Tigger -17230 NR_046084 100505696 Hs.745026 NR_046084 ENSG00000224660 SH3BP5-AS1 - SH3BP5 antisense RNA 1 ncRNA 164.5-41 chr2 176579130 176579285 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR 21845 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 249.25-22 chr7 16622554 16622842 + 1.25 NA intron (NM_020319, intron 4 of 9) AluSx3|SINE|Alu 23056 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 184-52 chr8 119527357 119527539 + 1.25 NA Intergenic Intergenic 65560 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 154.25-66 chr8 114935299 114935529 + 1.25 NA Intergenic Intergenic 732599 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 132-54 chr4 32574777 32574908 + 1.25 NA Intergenic L1M2|LINE|L1 223804 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 160.75-7 chr10 26696268 26696445 + 1.25 NA Intergenic Intergenic -1068 NM_001321979 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 220.75-16 chr2 128682348 128682535 + 1.25 NA Intergenic Intergenic -182159 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 180.25-28 chr2 74830356 74830538 + 1.25 NA Intergenic Intergenic -2208 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 144.25-59 chr5 22852002 22852242 + 1.25 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 1222 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 231.75-12 chr18 11537817 11538077 + 1.25 NA Intergenic HERV35I-int|LTR|ERV1 47899 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 114.25-116 chrX 25373467 25373639 + 1.25 NA Intergenic L1M5|LINE|L1 -357588 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 304.25-10 chr3 118946516 118946959 + 1.25 NA intron (NR_046230, intron 3 of 3) intron (NR_046230, intron 3 of 3) 3661 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 180.5-17 chr11 71500296 71500500 + 1.25 NA intron (NM_018161, intron 20 of 20) MER20|DNA|hAT-Charlie -26869 NM_001012503 440050 Hs.710675 NM_001012503 ENSG00000244411 KRTAP5-7 KRTAP5-3|KRTAP5.7 keratin associated protein 5-7 protein-coding 206.5-52 chr7 123718010 123718205 + 1.25 NA intron (NM_003941, intron 1 of 10) Arthur1|DNA|hAT-Tip100 30896 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 230.75-15 chr3 133877473 133877823 + 1.25 NA intron (NM_016577, intron 1 of 7) L1MEc|LINE|L1 18199 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 191.5-27 chr17 71542569 71542774 + 1.25 NA Intergenic Intergenic -340492 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 247.75-13 chr2 152726766 152727132 + 1.25 NA intron (NR_146431, intron 2 of 3) Tigger3b|DNA|TcMar-Tigger 8312 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 169.5-47 chr2 241592207 241592407 + 1.25 NA intron (NM_001164356, intron 4 of 4) intron (NM_001164356, intron 4 of 4) 25194 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 217.75-31 chr4 117495082 117495387 + 1.25 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 66836 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 293-2 chr11 77263072 77263419 + 1.25 NA intron (NM_182833, intron 10 of 16) L1MEc|LINE|L1 38421 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 247.25-26 chr5 102416424 102416670 + 1.25 NA intron (NM_001308014, intron 3 of 8) L1PB4|LINE|L1 82454 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 197.5-55 chr6 147778553 147778834 + 1.25 NA Intergenic L2a|LINE|L2 270003 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 135.5-25 chr13 50619394 50619525 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -92010 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 172.5-61 chr5 38026153 38026378 + 1.25 NA intron (NR_147009, intron 1 of 2) intron (NR_147009, intron 1 of 2) 568 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 253.75-18 chr6 151076733 151077064 + 1.25 NA intron (NR_146719, intron 27 of 28) L1MEc|LINE|L1 -25777 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 161.75-55 chr7 73705905 73706087 + 1.25 NA intron (NM_001165903, intron 3 of 9) intron (NM_001165903, intron 3 of 9) -5321 NR_036247 100422948 NR_036247 ENSG00000265724 MIR4284 mir-4284 microRNA 4284 ncRNA 189-2 chr1 49079330 49079573 + 1.25 NA intron (NM_001323575, intron 4 of 12) THE1D|LTR|ERVL-MaLR -177960 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 165.5-2 chr1 38884950 38885228 + 1.25 NA TTS (NM_017821) TTS (NM_017821) -3463 NR_037635 100527950 Hs.591506 NR_037633 GJA9-MYCBP Cx58|Cx59|GJA10|GJA9 GJA9-MYCBP readthrough ncRNA 173.5-26 chr14 72488501 72488714 + 1.25 NA intron (NM_001370294, intron 12 of 14) intron (NM_001370294, intron 12 of 14) -28213 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 160.75-64 chr7 89003336 89003491 + 1.25 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -207676 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 248.25-34 chr8 80255676 80255959 + 1.25 NA Intergenic AluSc8|SINE|Alu 14428 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 168.5-32 chr15 91732150 91732330 + 1.25 NA Intergenic Intergenic -121468 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 132.75-24 chr11 36534747 36534884 + 1.25 NA Intergenic L1M6|LINE|L1 -24543 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 142.75-11 chr10 7959453 7959747 + 1.25 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 92891 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 181-32 chr2 155580762 155580977 + 1.25 NA Intergenic Intergenic 674062 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 179.25-25 chr20 53424307 53424503 + 1.25 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -128365 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 307.25-10 chr7 118016076 118016415 + 1.25 NA Intergenic Intergenic -142804 NM_001363351 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 200.75-18 chr18 13666657 13666983 + 1.25 NA intron (NM_152352, intron 3 of 3) intron (NM_152352, intron 3 of 3) 25062 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 161-51 chr4 151983813 151984027 + 1.25 NA Intergenic Intergenic -116833 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 168.25-5 chr1 238773132 238773346 + 1.25 NA Intergenic Intergenic -287222 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 139.25-80 chr8 79518505 79518692 + 1.25 NA Intergenic Intergenic -92519 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 233-20 chr3 2708459 2708737 + 1.25 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -183617 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 183.75-5 chr1 212647732 212647999 + 1.25 NA Intergenic Intergenic 23391 NM_153606 149647 Hs.129293 NM_153606 ENSG00000162771 FAM71A GARI-L4 family with sequence similarity 71 member A protein-coding 197.75-7 chr11 108045919 108046125 + 1.25 NA intron (NM_003478, intron 2 of 18) intron (NM_003478, intron 2 of 18) 37124 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 151.5-52 chr3 85327741 85327918 + 1.25 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -57881 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 117.25-79 chr6 54859624 54859801 + 1.25 NA intron (NM_001010872, intron 1 of 4) intron (NM_001010872, intron 1 of 4) 12941 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 213.5-36 chr4 12999307 12999552 + 1.25 NA Intergenic Intergenic 484911 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 201-25 chr2 110187592 110187801 + 1.25 NA intron (NM_207181, intron 2 of 19) L1PA10|LINE|L1 17317 NM_000272 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 192-32 chr22 37322218 37322564 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 32448 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 259.75-4 chr11 44142626 44142927 + 1.25 NA intron (NM_207122, intron 7 of 13) intron (NM_207122, intron 7 of 13) 46579 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 290.5-21 chr3 188050231 188050615 + 1.25 NA Intergenic Intergenic -74016 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 146.5-37 chr16 86569106 86569495 + 1.25 NA 3' UTR (NM_005251, exon 1 of 1) 3' UTR (NM_005251, exon 1 of 1) -1539 NR_125795 103752587 Hs.609366 NR_125795 ENSG00000260944 FOXC2-AS1 ODRUL FOXC2 antisense RNA 1 ncRNA 187.5-85 chr8 81700047 81700368 + 1.25 NA Intergenic AluSx1|SINE|Alu -5149 NM_001010893 347051 Hs.683849 NM_001010893 ENSG00000253598 SLC10A5 P5 solute carrier family 10 member 5 protein-coding 204.5-51 chr6 55305061 55305270 + 1.25 NA Intergenic L2a|LINE|L2 -22304 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 342.25-7 chr7 1731776 1732212 + 1.25 NA intron (NM_001128636, intron 2 of 2) intron (NM_001128636, intron 2 of 2) 10316 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 151.75-10 chr11 24624178 24624434 + 1.25 NA intron (NM_001252008, intron 1 of 11) L2c|LINE|L2 127253 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 218.25-16 chr13 101447662 101447908 + 1.25 NA Intergenic HAL1|LINE|L1 -4808 NM_001271755 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 211.25-41 chr9 32940323 32940688 + 1.25 NA Intergenic MER1B|DNA|hAT-Charlie 61071 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 170.25-35 chr2 145574875 145575032 + 1.25 NA Intergenic L3b|LINE|CR1 906986 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 223-36 chr8 58102292 58102518 + 1.25 NA intron (NM_147189, intron 4 of 4) intron (NM_147189, intron 4 of 4) 107882 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 290-10 chr3 40211139 40211583 + 1.25 NA intron (NM_001284424, intron 11 of 15) intron (NM_001284424, intron 11 of 15) 98337 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 213.25-26 chr21 16232337 16232637 + 1.25 NA intron (NR_027790, intron 4 of 7) L1M5|LINE|L1 38108 NR_136543 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 143.5-62 chr22 20564676 20564881 + 1.25 NA intron (NM_001003891, intron 6 of 17) intron (NM_001003891, intron 6 of 17) 56731 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 181.25-20 chr16 74935501 74935713 + 1.25 NA intron (NM_001324172, intron 8 of 13) intron (NM_001324172, intron 8 of 13) 49516 NM_030581 79726 Hs.280951 NM_030581 ENSG00000103091 WDR59 CDW12|FP977|p90-120 WD repeat domain 59 protein-coding 288.5-12 chr20 39196716 39197042 + 1.25 NA Intergenic Intergenic 27869 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 207.25-8 chr15 64213741 64213945 + 1.25 NA intron (NM_001329607, intron 6 of 11) intron (NM_001329607, intron 6 of 11) -50688 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 144.25-20 chr14 59707030 59707380 + 1.25 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -60185 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 207-16 chr15 61706290 61706529 + 1.25 NA Intergenic L1MC4a|LINE|L1 -23509 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 128-52 chr5 103831274 103831516 + 1.25 NA Intergenic Intergenic -268606 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 137.5-112 chr8 64843964 64844116 + 1.25 NA Intergenic Intergenic -45303 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 228.75-10 chr12 14810833 14811104 + 1.25 NA intron (NM_001013698, intron 1 of 1) MamTip3|DNA|hAT-Tip100 3214 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 218.25-33 chr4 34391888 34392138 + 1.25 NA Intergenic Intergenic -122266 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 174.5-33 chr17 68761068 68761245 + 1.25 NA Intergenic Intergenic 133002 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 120-2 chr1 55076685 55076791 + 1.25 NA intron (NM_015306, intron 62 of 67) intron (NM_015306, intron 62 of 67) 36516 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 188.5-10 chr12 12193498 12193648 + 1.25 NA intron (NM_002336, intron 3 of 22).2 L1M4a2|LINE|L1 73471 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 198.25-2 chr1 103289002 103289366 + 1.25 NA Intergenic L2c|LINE|L2 -180662 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 113.75-42 chr16 51981038 51981248 + 1.25 NA Intergenic Intergenic 92792 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 186.25-16 chr13 86752411 86752625 + 1.25 NA Intergenic Intergenic -159402 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 209.5-48 chr8 90987241 90987532 + 1.25 NA Intergenic L2b|LINE|L2 -2148 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 185.75-14 chr11 31270256 31270541 + 1.25 NA intron (NM_181807, intron 7 of 8) MER58B|DNA|hAT-Charlie 99341 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 151.25-38 chr3 54163041 54163257 + 1.25 NA intron (NM_018398, intron 2 of 37) L2a|LINE|L2 40597 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 286.5-15 chr7 811030 811329 + 1.25 NA Intergenic AluY|SINE|Alu -4378 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 169.25-11 chr11 86044408 86044624 + 1.25 NA intron (NM_001206947, intron 1 of 18) LSU-rRNA_Hsa|rRNA|rRNA 24568 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 228.5-29 chr4 59367867 59368086 + 1.25 NA Intergenic MSTB2|LTR|ERVL-MaLR 354403 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 220-12 chr14 80245267 80245537 + 1.25 NA intron (NR_038355, intron 2 of 8) L1ME3|LINE|L1 -14345 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 217.25-35 chr8 113433388 113433694 + 1.25 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 3398 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 157.75-14 chr11 22771027 22771278 + 1.25 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 58227 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 118-72 chr8 104334990 104335112 + 1.25 NA Intergenic L1ME1|LINE|L1 -4745 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 117.75-23 chr15 33272761 33272915 + 1.25 NA Intergenic L1MA1|LINE|L1 -25283 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 136.25-41 chr18 71902176 71902286 + 1.25 NA Intergenic Intergenic -120005 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 159.5-66 chr5 8249048 8249234 + 1.25 NA Intergenic Intergenic 208423 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 139.5-16 chr11 106045679 106045887 + 1.25 NA Intergenic Intergenic -23496 NM_001318747 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 133.5-57 chr21 15681172 15681455 + 1.25 NA Intergenic Intergenic -48621 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 181-14 chr11 38813387 38813599 + 1.25 NA Intergenic L1P1|LINE|L1 164635 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 241.75-2 chr1 189244141 189244453 + 1.25 NA Intergenic Intergenic 1231713 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 180-64 chr7 52434989 52435276 + 1.25 NA Intergenic Intergenic -600501 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 215.75-2 chr10 67059498 67059739 + 1.25 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 47352 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 315.5-5 chr2 74741184 74741696 + 1.25 NA Intergenic Intergenic 87193 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 249.25-5 chr14 65821603 65821837 + 1.25 NA Intergenic Intergenic 350618 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 134.75-62 chr6 24827686 24827900 + 1.25 NA intron (NM_001286445, intron 18 of 21) intron (NM_001286445, intron 18 of 21) -28876 NM_001282492 101928603 Hs.635133 NM_001282492 ENSG00000260286 ARMH2 C6orf229 armadillo like helical domain containing 2 protein-coding 191.75 chr1 96367201 96367485 + 1.25 NA intron (NR_110693, intron 1 of 5) Tigger3b|DNA|TcMar-Tigger 6782 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 345.5-6 chr5 45623081 45623461 + 1.25 NA intron (NM_021072, intron 2 of 7) L2c|LINE|L2 73109 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 238.5-21 chr22 35356152 35356547 + 1.25 NA Intergenic AluSx1|SINE|Alu -19550 NR_106717 102464824 NR_106717 ENSG00000274280 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 250.75-4 chr12 19037156 19037549 + 1.25 NA Intergenic LOR1b|LTR|ERV1 -92381 NM_001190860 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 143.75-19 chr11 37940069 37940226 + 1.25 NA intron (NR_135110, intron 1 of 2) intron (NR_135110, intron 1 of 2) 1546 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 148-43 chr3 98961650 98961887 + 1.25 NA Intergenic Intergenic -60073 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 163.75-72 chr8 129353401 129353699 + 1.25 NA intron (NR_130920, intron 3 of 3) MIRc|SINE|MIR -112310 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 197.75-32 chr3 193752846 193753072 + 1.25 NA Intergenic AluJo|SINE|Alu 91050 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 294.25-13 chr8 76602302 76602630 + 1.25 NA Intergenic Intergenic -78781 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 196-25 chr22 27590620 27590887 + 1.25 NA Intergenic Intergenic 211003 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 181-9 chr10 73338615 73338870 + 1.25 NA intron (NM_001367801, intron 7 of 27) MER8|DNA|TcMar-Tigger 20012 NM_001350933 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 225-13 chr2 68460550 68460763 + 1.25 NA 3' UTR (NM_001024680, exon 4 of 4) 3' UTR (NM_001024680, exon 4 of 4) 6638 NR_133923 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 199.75-39 chr7 53360194 53360382 + 1.25 NA Intergenic Intergenic 324655 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 246.25-2 chr1 166678440 166678824 + 1.25 NA Intergenic Intergenic 74716 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 215.5-26 chr2 144001358 144001635 + 1.25 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 64429 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 163.5-81 chr6 99103432 99103659 + 1.25 NA Intergenic Intergenic -21064 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 194-23 chr22 21672713 21672912 + 1.25 NA intron (NM_148175, intron 5 of 20) intron (NM_148175, intron 5 of 20) 6800 NM_014337 23759 Hs.438587 NM_014337 ENSG00000100023 PPIL2 CYC4|CYP60|Cyp-60|UBOX7|hCyP-60 peptidylprolyl isomerase like 2 protein-coding 293.25-16 chr7 48463320 48463808 + 1.25 NA intron (NM_152701, intron 43 of 61) L1MEj|LINE|L1 292106 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 278.25-10 chr17 33697478 33698002 + 1.25 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -163980 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 139-3 chr10 54782227 54782389 + 1.25 NA intron (NM_001354404, intron 4 of 34) MIRb|SINE|MIR 18923 NM_001142763 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 228.75-43 chr9 28171216 28171561 + 1.25 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 547917 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 272-27 chr8 126016296 126016727 + 1.25 NA Intergenic MER53|DNA|hAT -65314 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 328.25-9 chr4 33159866 33160226 + 1.25 NA Intergenic Intergenic 809008 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 160.5-60 chr5 103354297 103354461 + 1.25 NA Intergenic Intergenic 94955 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 139.75 chr1 24519698 24519870 + 1.25 NA intron (NM_001251985, intron 1 of 1) intron (NM_001251985, intron 1 of 1) 5470 NM_001251985 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 284.25-19 chr4 44163010 44163414 + 1.25 NA Intergenic L1M4|LINE|L1 146150 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 232.5-39 chr5 34939655 34940010 + 1.25 NA intron (NM_194283, intron 6 of 12) intron (NM_194283, intron 6 of 12) 10239 NM_001348420 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 259-21 chr3 50069936 50070189 + 1.25 NA intron (NM_001349194, intron 15 of 17) intron (NM_001349194, intron 15 of 17) -18857 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 251.5-10 chr17 67745941 67746282 + 1.25 NA Intergenic Intergenic 5441 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 182.25-6 chr10 95519661 95519918 + 1.25 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) 41582 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 291.25-12 chr2 113224748 113225040 + 1.25 NA intron (NM_013992, intron 7 of 8) intron (NM_013992, intron 7 of 8) -10633 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 235.25-12 chr2 13516474 13516746 + 1.25 NA Intergenic Intergenic -509597 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 174.75-8 chr10 83825034 83825180 + 1.25 NA Intergenic Intergenic -148018 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 388.5-8 chr5 13944955 13945525 + 1.25 NA promoter-TSS (NM_001369) promoter-TSS (NM_001369) -760 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 132.75-56 chr2 73072601 73072804 + 1.25 NA promoter-TSS (NM_144579) promoter-TSS (NM_144579) -866 NM_144579 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 141.75-36 chr19 31832901 31833123 + 1.25 NA Intergenic Intergenic -192850 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 248.5-26 chr5 94483961 94484264 + 1.25 NA intron (NM_001145678, intron 6 of 20) intron (NM_001145678, intron 6 of 20) 134492 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 221-15 chr16 26357156 26357475 + 1.25 NA Intergenic L1PA15|LINE|L1 332078 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 211.5-4 chr10 96093734 96093923 + 1.25 NA Intergenic Intergenic -3593 NR_134321 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 161.75-11 chr12 57020929 57021069 + 1.25 NA Intergenic Intergenic -4470 NR_135164 6866 Hs.9730 NM_013251 ENSG00000166863 TAC3 HH10|NKB|NKNB|PRO1155|ZNEUROK1 tachykinin 3 protein-coding 208-32 chr4 188641426 188641605 + 1.25 NA Intergenic Intergenic -135142 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 173-29 chr2 200808387 200808575 + 1.25 NA intron (NR_110275, intron 1 of 3) intron (NR_110275, intron 1 of 3) -3065 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 218.25-7 chr10 82575233 82575529 + 1.25 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -342461 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 252.25-19 chr6 48119191 48119604 + 1.25 NA Intergenic Intergenic -50708 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 211.25-8 chr10 68519754 68519930 + 1.25 NA intron (NM_001324314, intron 1 of 9) AluSq2|SINE|Alu -1624 NM_001324315 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 134.25-6 chr10 55550249 55550461 + 1.25 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -48687 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 163-36 chr3 70618370 70618545 + 1.25 NA Intergenic Intergenic -305819 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 213.75-47 chr8 37925843 37926095 + 1.25 NA Intergenic Intergenic 14155 NM_152413 137362 Hs.380740 NM_152413 ENSG00000169154 GOT1L1 - glutamic-oxaloacetic transaminase 1 like 1 protein-coding 324.25-7 chr8 61618363 61618723 + 1.25 NA intron (NM_004318, intron 14 of 24) L2c|LINE|L2 71268 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 239.75-2 chr1 101246132 101246485 + 1.25 NA Intergenic Intergenic 9559 NM_001400 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 179.5-74 chr5 7253669 7253942 + 1.25 NA Intergenic L1ME2|LINE|L1 15549 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 139.5-15 chr11 97432682 97432861 + 1.25 NA Intergenic Intergenic 924346 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 421-4 chr3 11477266 11477897 + 1.25 NA intron (NM_001349238, intron 17 of 17) intron (NM_001349238, intron 17 of 17) 91217 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 234.25-35 chr8 86252829 86253148 + 1.25 NA Intergenic L1M4|LINE|L1 -22607 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 138.5-97 chr7 44864978 44865196 + 1.25 NA Intergenic MER65D|LTR|ERV1 16713 NR_039801 100616393 NR_039801 ENSG00000284261 MIR4657 mir-4657 microRNA 4657 ncRNA 202.75-21 chr5 40668538 40668866 + 1.25 NA Intergenic Intergenic -11213 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 167.25-67 chr5 180658938 180659157 + 1.25 NA Intergenic Intergenic -9447 NM_182925 2324 Hs.646917 NM_002020 ENSG00000037280 FLT4 FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3 fms related tyrosine kinase 4 protein-coding 215.5-23 chr19 49953906 49954200 + 1.25 NA intron (NM_001135163, intron 7 of 9) HERV3-int|LTR|ERV1 7119 NM_001135163 114132 Hs.661852 NM_052884 ENSG00000161640 SIGLEC11 - sialic acid binding Ig like lectin 11 protein-coding 125.75-36 chr2 76468715 76468868 + 1.25 NA Intergenic MIRb|SINE|MIR -517174 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 249-41 chr8 13539517 13539752 + 1.25 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -24783 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 136.5-50 chr19 55163632 55163752 + 1.25 NA intron (NM_001256716, intron 4 of 11) intron (NM_001256716, intron 4 of 11) 2921 NM_001256715 352909 Hs.351582 NM_178837 ENSG00000167646 DNAAF3 C19orf51|CILD2|DAB1|PCD|PF22 dynein axonemal assembly factor 3 protein-coding 224.5 chr1 36021961 36022264 + 1.25 NA intron (NM_177422, intron 9 of 16) AluJb|SINE|Alu -61982 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 362.75-5 chr8 130787488 130787861 + 1.25 NA intron (NM_001115, intron 15 of 17) (TG)n|Simple_repeat|Simple_repeat 253235 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 140.5-115 chr9 94043290 94043486 + 1.25 NA intron (NM_177995, intron 1 of 9) L1MC3|LINE|L1 12575 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 211.75-19 chr19 10813358 10813565 + 1.25 NA intron (NM_001005362, intron 14 of 19) L1MA4|LINE|L1 4035 NR_029586 406976 NR_029586 ENSG00000207752 MIR199A1 MIR-199-s|MIRN199A1|mir-199a-1 microRNA 199a-1 ncRNA 152.5-52 chr2 115466810 115467039 + 1.25 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 123109 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 196.75-33 chr5 95487975 95488282 + 1.25 NA intron (NM_014639, intron 37 of 42) L1M2|LINE|L1 66877 NM_014639 9652 Hs.482868 NM_014639 ENSG00000198677 TTC37 KIAA0372|Ski3|THES tetratricopeptide repeat domain 37 protein-coding 229.25-24 chr6 2378079 2378322 + 1.25 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 132447 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 129.75-55 chr3 76178383 76178503 + 1.25 NA Intergenic Intergenic -392894 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 187.25-21 chr13 87312026 87312188 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL 306633 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 183-34 chr2 172547168 172547335 + 1.25 NA Intergenic AluSx3|SINE|Alu -8122 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 159.5-28 chr15 44086217 44086442 + 1.25 NA intron (NM_032892, intron 1 of 13) L1MB5|LINE|L1 108117 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 225-47 chr9 110981286 110981614 + 1.25 NA intron (NM_001351397, intron 1 of 4) MIR|SINE|MIR 55330 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 132-16 chr11 41890295 41890440 + 1.25 NA Intergenic Intergenic 175799 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 117-12 chr10 51201005 51201196 + 1.25 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -98473 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 172.25-23 chr15 48111786 48111992 + 1.25 NA Intergenic Intergenic -9101 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 163.75-49 chr4 59024555 59024891 + 1.25 NA intron (NR_133942, intron 1 of 1) intron (NR_133942, intron 1 of 1) 11150 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 320.5-13 chr4 19704746 19705114 + 1.25 NA Intergenic Intergenic -546975 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 280.25-9 chr2 30987011 30987372 + 1.25 NA intron (NM_001253826, intron 3 of 15) intron (NM_001253826, intron 3 of 15) 142449 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 126.75-63 chr3 197780352 197780465 + 1.25 NA intron (NM_001011537, intron 9 of 9) L1MB8|LINE|L1 -10818 NM_032773 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 258-15 chr14 79460300 79460575 + 1.25 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 181057 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 178-43 chr5 84729580 84729866 + 1.25 NA Intergenic Intergenic -344843 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 170-22 chr2 151867929 151868095 + 1.25 NA intron (NM_000726, intron 9 of 13) intron (NM_000726, intron 9 of 13) -39591 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 118-26 chr14 51018575 51018704 + 1.25 NA intron (NM_015163, intron 3 of 9) intron (NM_015163, intron 3 of 9) -74156 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 121.75-56 chr22 47941447 47941583 + 1.25 NA Intergenic Intergenic 309841 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 199.25-19 chr19 33997953 33998274 + 1.25 NA Intergenic L1ME1|LINE|L1 -174391 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 265-28 chr8 102315275 102315529 + 1.25 NA intron (NM_001282873, intron 14 of 58) intron (NM_001282873, intron 14 of 58) 75951 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 150.75-46 chr3 62287338 62287538 + 1.25 NA intron (NM_002841, intron 28 of 29) intron (NM_002841, intron 28 of 29) 31509 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 309.5-2 chr10 22430509 22430824 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity 7263 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 192.25-42 chr9 19432051 19432335 + 1.25 NA intron (NM_001010887, intron 3 of 5) intron (NM_001010887, intron 3 of 5) 23184 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 176.75-41 chr4_KI270787v1_alt 70958 71183 + 1.25 NA NA Intergenic NA NA 252.75-28 chr6 125120796 125121190 + 1.25 NA Intergenic MER41-int|LTR|ERV1 -32780 NM_001300994 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 142.75-80 chr7 51605615 51605752 + 1.25 NA Intergenic Intergenic -212427 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 359.5 chr1 203362124 203362586 + 1.25 NA Intergenic Intergenic -11233 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 303.5-9 chr17 74681480 74681930 + 1.25 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 10574 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 158.25-57 chr6 46566006 46566178 + 1.25 NA intron (NM_016593, intron 10 of 11) intron (NM_016593, intron 10 of 11) -74025 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 285.25-12 chr2 226135948 226136243 + 1.25 NA Intergenic MLT1J2|LTR|ERVL-MaLR -6699 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 190-26 chr2 148660658 148660963 + 1.25 NA intron (NM_015630, intron 1 of 13) intron (NM_015630, intron 1 of 13) 16059 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 244-21 chr5 121888899 121889194 + 1.25 NA Intergenic Intergenic 37164 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 170.75-67 chr7 36029889 36030089 + 1.25 NA Intergenic MLT1O|LTR|ERVL-MaLR -65321 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 194.25-41 chr5 31143812 31144093 + 1.25 NA Intergenic Intergenic -49734 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 213.75-35 chr5 39157986 39158183 + 1.25 NA intron (NM_001243093, intron 2 of 18) MamGypLTR3|LTR|Gypsy 61479 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 234.75-41 chr7 48014139 48014373 + 1.25 NA intron (NM_001030019, intron 3 of 9) intron (NM_001030019, intron 3 of 9) 14851 NM_001030019 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 200.25-24 chr2 55140799 55141036 + 1.25 NA Intergenic Intergenic -3086 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 234.75-42 chr7 157845024 157845364 + 1.25 NA intron (NM_130843, intron 11 of 21) intron (NM_130843, intron 11 of 21) -9391 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 360.75-5 chr3 2132513 2132884 + 1.25 NA intron (NR_046555, intron 1 of 2) intron (NR_046555, intron 1 of 2) 11543 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 163.25-70 chr8 68779520 68779674 + 1.25 NA intron (NR_146187, intron 11 of 13) intron (NR_146187, intron 11 of 13) 324593 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 268.25-6 chr2 44524736 44524976 + 1.25 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 162909 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 142.75-71 chr5 129497050 129497264 + 1.25 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -36468 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 150-60 chr4 162500301 162500482 + 1.25 NA Intergenic Intergenic -336357 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 226.25-5 chr10 93241790 93242051 + 1.25 NA Intergenic L1ME3F|LINE|L1 168027 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 308.75-5 chr2 211822623 211822983 + 1.25 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 603557 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 211-9 chr11 58235970 58236154 + 1.25 NA Intergenic L1M2|LINE|L1 -7144 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 241.25-12 chr3 70062649 70062922 + 1.25 NA Intergenic Intergenic 63041 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 144.25-65 chr5 147074309 147074489 + 1.25 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) 7071 NM_181678 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 207.75-22 chr20 3262731 3262957 + 1.25 NA intron (NM_001009984, intron 31 of 36) intron (NM_001009984, intron 31 of 36) -23654 NM_001363745 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 155.5-69 chr22 24915575 24915902 + 1.25 NA intron (NM_001098498, intron 21 of 23) L1MA1|LINE|L1 30957 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 175.5-55 chr4 46877193 46877463 + 1.25 NA intron (NM_130902, intron 1 of 2) MIR3|SINE|MIR 31917 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 257.75-2 chr1 114454189 114454470 + 1.25 NA intron (NM_015906, intron 4 of 19) MER68-int|LTR|ERVL 56874 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 207.25-6 chr11 25531123 25531322 + 1.25 NA Intergenic Intergenic -657901 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 138.75-26 chr15 81199446 81199709 + 1.25 NA 5' UTR (NM_001352686, exon 1 of 19) 5' UTR (NM_001352686, exon 1 of 19) 101 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 244.25-7 chr15 51915551 51915765 + 1.25 NA TTS (NM_014547) TTS (NM_014547) 8462 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 167.75-65 chr7 82699144 82699369 + 1.25 NA Intergenic Intergenic -255300 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 155.5-43 chr17 58760021 58760159 + 1.25 NA intron (NM_014906, intron 1 of 6) L2c|LINE|L2 4221 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 218-31 chr3 96827561 96828015 + 1.25 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 13194 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 143.25-49 chr3 77540122 77540364 + 1.25 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 442231 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 182.5-40 chr3 15852366 15852610 + 1.25 NA intron (NM_001349279, intron 1 of 28) intron (NM_001349279, intron 1 of 28) 7326 NM_015199 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 160.5-49 chr3 65248953 65249117 + 1.25 NA Intergenic MamGypLTR1a|LTR|Gypsy -561035 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 324.5-9 chr2 63377090 63377640 + 1.25 NA intron (NM_001354045, intron 12 of 12) intron (NM_001354045, intron 12 of 12) 60642 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 176-31 chr3 181235111 181235290 + 1.25 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 3463 NR_104084 101954275 NR_104084 ENSG00000201654 RNU6-7 U6-7 RNA, U6 small nuclear 7 snRNA 138.5-72 chr3 100461720 100461995 + 1.25 NA Intergenic L2c|LINE|L2 -30762 NM_001363876 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 189.5-66 chr7 103794858 103795107 + 1.25 NA intron (NM_005045, intron 3 of 64) intron (NM_005045, intron 3 of 64) 194534 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 167-35 chr2 165670353 165670612 + 1.25 NA intron (NM_024969, intron 3 of 4) intron (NM_024969, intron 3 of 4) 98146 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 240.5-2 chr1 90360752 90361032 + 1.25 NA Intergenic Intergenic -296858 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 342.25-8 chr7 52084483 52084988 + 1.25 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -691479 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 151-24 chr17 47291749 47291886 + 1.25 NA intron (NM_000212, intron 9 of 14) intron (NM_000212, intron 9 of 14) 31796 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 142.75-56 chr3 112298581 112298877 + 1.25 NA Intergenic L1M1|LINE|L1 -3749 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 287.75-6 chr5 109589620 109590039 + 1.25 NA Intergenic Intergenic -99537 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 137.5-58 chr2 101574989 101575154 + 1.25 NA Intergenic Intergenic -99959 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 118.5-36 chr13 55515240 55515420 + 1.25 NA Intergenic Intergenic 340876 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 188.5-57 chr8 126795696 126795869 + 1.25 NA Intergenic L1MC1|LINE|L1 -217372 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 168-35 chr18 68179935 68180160 + 1.25 NA Intergenic Intergenic -365225 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 135.75-47 chr2 105276976 105277098 + 1.25 NA intron (NM_001142621, intron 7 of 11) intron (NM_001142621, intron 7 of 11) 35294 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 267.5 chr1 167107413 167107699 + 1.25 NA intron (NM_001080426, intron 2 of 5) intron (NM_001080426, intron 2 of 5) 13481 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 351-12 chr9 33005660 33006017 + 1.25 NA intron (NM_001368996, intron 1 of 7) L1MB3|LINE|L1 -4197 NM_175073 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 204-21 chr2 67463633 67463928 + 1.25 NA Intergenic Intergenic 66447 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 182.25-8 chr11 106196122 106196397 + 1.25 NA Intergenic AluJr|SINE|Alu -53760 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 242.75-3 chr10 60868803 60869152 + 1.25 NA TTS (NM_001350908) TTS (NM_001350908) 75208 NM_001242359 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 241.75-16 chr20 2628707 2628909 + 1.25 NA intron (NM_080751, intron 17 of 19) THE1C|LTR|ERVL-MaLR -23824 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 235.5-40 chr4 89589215 89589664 + 1.25 NA Intergenic MIRb|SINE|MIR -246962 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 212.25-38 chr7 6316237 6316722 + 1.25 NA Intergenic Intergenic 32488 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 158.25-23 chr19 34424993 34425192 + 1.25 NA intron (NM_032346, intron 6 of 6) intron (NM_032346, intron 6 of 6) -3289 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 241.5-27 chr4 95360613 95360840 + 1.25 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 188247 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 189.25-19 chr18 10334148 10334444 + 1.25 NA Intergenic Intergenic 80074 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 138.25-49 chr2 229611139 229611338 + 1.25 NA intron (NM_139072, intron 1 of 12) MER119|DNA|hAT-Charlie 103317 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 152-10 chr10 13947915 13948099 + 1.25 NA intron (NM_018027, intron 2 of 24) AluJr|SINE|Alu 23889 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 281.75-7 chr18 68962638 68962961 + 1.25 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 164719 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 154.75-55 chr5 174390211 174390431 + 1.25 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 53967 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 325.25 chr1 147914330 147914689 + 1.25 NA Intergenic Intergenic 11714 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 311-10 chr3 26903900 26904240 + 1.25 NA Intergenic L1PA17|LINE|L1 209513 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 176.5-66 chr4 62664599 62664837 + 1.25 NA Intergenic L1MA9|LINE|L1 -502953 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 171.25-10 chr12 20641396 20641674 + 1.25 NA intron (NM_000921, intron 10 of 15) intron (NM_000921, intron 10 of 15) -53820 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 131-32 chr2 197018274 197018461 + 1.25 NA intron (NM_001367496, intron 17 of 27) L2a|LINE|L2 -91660 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 225.75-26 chr8 74040424 74040638 + 1.25 NA Intergenic L1MA3|LINE|L1 49139 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 165.5-86 chr7 111692620 111692785 + 1.25 NA Intergenic Intergenic -115803 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 175.25-29 chr2 111985873 111986041 + 1.25 NA intron (NM_006343, intron 8 of 18) intron (NM_006343, intron 8 of 18) -69312 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 147.5-43 chr2 33836988 33837231 + 1.25 NA intron (NR_126403, intron 1 of 5) MIRb|SINE|MIR -108892 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 119.5-53 chr18 70436663 70436786 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -52133 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 152-53 chr5 67213875 67214087 + 1.25 NA Intergenic L2a|LINE|L2 -17182 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 218.75-19 chr17 68569907 68570161 + 1.25 NA intron (NM_017565, intron 1 of 10) L2c|LINE|L2 -11607 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 187.75-19 chr2 18983713 18984014 + 1.25 NA Intergenic Intergenic 43108 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 179.75-42 chr4 87006399 87006671 + 1.25 NA promoter-TSS (NM_001313959) promoter-TSS (NM_001313959) -453 NM_001313960 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 241-2 chr1 45826310 45826687 + 1.25 NA intron (NM_001324320, intron 2 of 29) AluJb|SINE|Alu 22885 NM_001319245 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 264.25 chr11 99806565 99807025 + 1.25 NA intron (NM_175566, intron 1 of 21) AluSg|SINE|Alu 250650 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 123.5-78 chr4 85041329 85041431 + 1.25 NA Intergenic L1MB8|LINE|L1 73896 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 158.25-63 chr8 64273252 64273449 + 1.25 NA intron (NR_125826, intron 1 of 4) L1MC4|LINE|L1 95208 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 184-34 chr3 113767535 113767918 + 1.25 NA intron (NM_001690, intron 1 of 14) AluSg7|SINE|Alu 20691 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 176.5-2 chr1 117505778 117506076 + 1.25 NA intron (NM_006699, intron 12 of 12) intron (NM_006699, intron 12 of 12) 99843 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 299.5-5 chr15 61237639 61237960 + 1.25 NA Intergenic Intergenic -8497 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 192.5-16 chr13 102554267 102554513 + 1.25 NA Intergenic LTR84b|LTR|ERVL -42596 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 126.5-69 chr20 54505598 54505787 + 1.25 NA intron (NM_018431, intron 1 of 7) L2a|LINE|L2 30099 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 117.25-43 chr2 59879226 59879338 + 1.25 NA Intergenic Intergenic 503754 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 154.75-33 chr2 187502382 187502597 + 1.25 NA intron (NM_001318941, intron 3 of 7) intron (NM_001318941, intron 3 of 7) 51946 NM_001329241 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 178.25-15 chr10 104174034 104174280 + 1.25 NA intron (NM_025145, intron 19 of 37) L1M5|LINE|L1 44726 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 255-27 chr8 125234143 125234475 + 1.25 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 142449 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 200.75-38 chr7 11559723 11559905 + 1.25 NA intron (NM_015204, intron 4 of 26) L1ME3E|LINE|L1 272384 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 177.25-43 chr5 146948766 146948929 + 1.25 NA intron (NM_001271900, intron 2 of 10) L2c|LINE|L2 -29341 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 226.5-23 chr2 8977621 8977910 + 1.25 NA intron (NR_135603, intron 1 of 13) L2a|LINE|L2 25919 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 191.5-9 chr11 38320328 38320578 + 1.25 NA Intergenic L1MA3|LINE|L1 325903 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 132.5-95 chr5 152600121 152600302 + 1.25 NA Intergenic Intergenic -194932 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 132.5-64 chr20 53395048 53395207 + 1.25 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -157643 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 255.25-3 chr10 44025389 44025674 + 1.25 NA Intergenic L1MEd|LINE|L1 113129 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 215-33 chr4 63397872 63398152 + 1.25 NA Intergenic L1PA17|LINE|L1 1011438 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 334.5-4 chr11 73638717 73639135 + 1.25 NA Intergenic AluSc8|SINE|Alu -7655 NM_021200 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 155.75-7 chr10 62646371 62646551 + 1.25 NA intron (NM_199452, intron 2 of 6) L3|LINE|CR1 126013 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 305.5-16 chr6 143154018 143154347 + 1.25 NA intron (NM_001366353, intron 2 of 4) MIR|SINE|MIR -10600 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 188-38 chr6 140686122 140686316 + 1.25 NA Intergenic Intergenic 2405 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 152.75-3 chr10 5642973 5643119 + 1.25 NA intron (NR_037164, intron 4 of 6) intron (NR_037164, intron 4 of 6) 23549 NM_024701 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 393-5 chr3 2902595 2903106 + 1.25 NA intron (NM_175607, intron 11 of 24) intron (NM_175607, intron 11 of 24) 10635 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 192.25-26 chr3 55505983 55506289 + 1.25 NA Intergenic Intergenic -18494 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 358.75-5 chr6 138318227 138318685 + 1.25 NA intron (NM_020340, intron 27 of 33) L1ME4a|LINE|L1 -59187 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 238-22 chr21 44348292 44348527 + 1.25 NA Intergenic Intergenic -5192 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 198.25-46 chr8 137207318 137207629 + 1.25 NA Intergenic Intergenic 206115 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 209-26 chr5 23266399 23266602 + 1.25 NA Intergenic Intergenic -241109 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 142.5-49 chr3 37103219 37103351 + 1.25 NA intron (NM_006309, intron 14 of 27) intron (NM_006309, intron 14 of 27) 71297 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 198.75-22 chr2 81730577 81730992 + 1.25 NA Intergenic Intergenic -263838 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 211.5-19 chr18 6803892 6804245 + 1.25 NA intron (NM_001366230, intron 1 of 17) AluY|SINE|Alu -30417 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 297-18 chr3 172957818 172958160 + 1.25 NA intron (NM_031955, intron 5 of 10) intron (NM_031955, intron 5 of 10) 183246 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 113-22 chr12 87181713 87181844 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger -148961 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 198-8 chr11 39692766 39692990 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger 600252 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 256.75-10 chr3 102877533 102877750 + 1.25 NA Intergenic AluJr|SINE|Alu 442626 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 203.75-32 chr5 44858704 44858950 + 1.25 NA Intergenic Intergenic 49880 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 152-34 chr2 76600797 76600974 + 1.25 NA Intergenic L1ME4b|LINE|L1 -385080 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 343.75-11 chr8 86442543 86442833 + 1.25 NA exon (NM_007013, exon 18 of 25) exon (NM_007013, exon 18 of 25) 65998 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 248.75-17 chr8 129066611 129066963 + 1.25 NA Intergenic Intergenic -100786 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 226.25-30 chr5 110509380 110509724 + 1.25 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 4363 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 221-13 chr11 94805778 94806013 + 1.25 NA intron (NM_130847, intron 3 of 12) intron (NM_130847, intron 3 of 12) 37539 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 219.5-17 chr15 23978597 23978891 + 1.25 NA intron (NR_126392, intron 2 of 5) L1M4|LINE|L1 3597 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 237.5-34 chr5 40558548 40558903 + 1.25 NA Intergenic Intergenic -121190 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 164.75-45 chr3 108515081 108515276 + 1.25 NA intron (NM_014981, intron 1 of 41) MLT1O|LTR|ERVL-MaLR 14144 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 346-4 chr14 69062586 69063080 + 1.25 NA intron (NM_003861, intron 7 of 8) intron (NM_003861, intron 7 of 8) 83151 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 276.75-4 chr10 42911844 42912105 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie 40453 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 180.25-38 chr3 34291962 34292261 + 1.25 NA Intergenic Intergenic 493481 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 264.5-2 chr10 68106387 68106883 + 1.25 NA non-coding (NR_045662, exon 2 of 20) non-coding (NR_045662, exon 2 of 20) 518 NM_001256267 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 221.75-16 chr2 127917814 127918198 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -32066 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 139.75-73 chr8 110584999 110585222 + 1.25 NA Intergenic Intergenic 442323 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 161-59 chr7 35805435 35805701 + 1.25 NA intron (NM_001788, intron 1 of 12) intron (NM_001788, intron 1 of 12) 4349 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 219.25-34 chr8 23788530 23788811 + 1.25 NA Intergenic Intergenic 66136 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 195.5-32 chr17 73804023 73804264 + 1.25 NA intron (NR_027146, intron 2 of 3) intron (NR_027146, intron 2 of 3) 17321 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 195.25-50 chr8 132227931 132228134 + 1.25 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -122767 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 261-33 chr4 78384640 78385032 + 1.25 NA intron (NM_001166133, intron 28 of 41) AluJb|SINE|Alu 95851 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 291.25-13 chr2 192275079 192275397 + 1.25 NA Intergenic Intergenic -80305 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 186-41 chr5 105247664 105247967 + 1.25 NA Intergenic L1MEf|LINE|L1 148341 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 241.75-4 chr10 64289433 64289856 + 1.25 NA Intergenic Intergenic -535884 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 218-34 chr4 53054566 53054765 + 1.25 NA intron (NM_152540, intron 5 of 8) AluJo|SINE|Alu 192348 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 414.75-3 chr17 65810750 65811434 + 1.25 NA intron (NR_126542, intron 1 of 5) L2c|LINE|L2 15359 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 224.25-8 chr13 108674550 108674760 + 1.25 NA intron (NM_015011, intron 2 of 34) intron (NM_015011, intron 2 of 34) 45044 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 283.25-11 chr4 57347211 57347574 + 1.25 NA Intergenic L1PA15|LINE|L1 -78480 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 215.5-47 chr7 118290648 118290958 + 1.25 NA Intergenic THE1D-int|LTR|ERVL-MaLR 66099 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 146-36 chr21 28842886 28843041 + 1.25 NA Intergenic MLT1L|LTR|ERVL-MaLR 42404 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 256.5-37 chr6 75869398 75869863 + 1.25 NA intron (NR_160538, intron 19 of 32) intron (NR_160538, intron 19 of 32) 120391 NM_001368865 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 193.75-38 chr5 12363538 12363806 + 1.25 NA Intergenic Intergenic -211185 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 131.5-43 chr2 130320923 130321054 + 1.25 NA Intergenic L1MC4|LINE|L1 21120 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 138-19 chr13 63250397 63250548 + 1.25 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 77622 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 187.5-73 chr7 16015261 16015488 + 1.25 NA Intergenic Intergenic -195112 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 181.75-40 chr7 104036013 104036310 + 1.25 NA Intergenic Intergenic -46503 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 158.25-28 chr22 45653785 45653931 + 1.25 NA Intergenic AluSc5|SINE|Alu -17940 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 198 chr1 84528538 84528791 + 1.25 NA intron (NM_001310156, intron 6 of 13) L1ME3B|LINE|L1 -22083 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 262.75-7 chr14 21530873 21531184 + 1.25 NA intron (NM_005407, intron 1 of 1) intron (NM_005407, intron 1 of 1) -4620 NR_111967 6297 Hs.416358 NM_005407 ENSG00000165821 SALL2 COLB|HSAL2|Sal-2|ZNF795|p150(Sal2) spalt like transcription factor 2 protein-coding 261-36 chr5 43226282 43226670 + 1.25 NA intron (NR_072980, intron 1 of 3) L2c|LINE|L2 33624 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 169-37 chr22 27009832 27010081 + 1.25 NA Intergenic Intergenic 50562 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 237.25-15 chr2 65380113 65380470 + 1.25 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) -13513 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 177.75-54 chr6 155560975 155561235 + 1.25 NA Intergenic Intergenic 46261 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 196.75-3 chr1 195725288 195725564 + 1.25 NA Intergenic L1MCc|LINE|L1 363289 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 312.5 chr1 167782659 167783079 + 1.25 NA intron (NM_003953, intron 5 of 5) MLT1D|LTR|ERVL-MaLR 60887 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 133.75-61 chr4 136016653 136016817 + 1.25 NA Intergenic L1M5|LINE|L1 -103055 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 127-15 chr11 75708736 75708837 + 1.25 NA Intergenic L1MC|LINE|L1 -9052 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 325.75-2 chr10 98716778 98717126 + 1.25 NA intron (NM_021828, intron 5 of 11) Tigger1|DNA|TcMar-Tigger 207616 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 120.75-30 chr14 71595171 71595481 + 1.25 NA intron (NM_001354286, intron 6 of 24) L4_B_Mam|LINE|RTE-X 9028 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 152.25-58 chr6 69276881 69277002 + 1.25 NA intron (NM_001704, intron 20 of 31) L1MA10|LINE|L1 519525 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 144-58 chr5 7104026 7104255 + 1.25 NA Intergenic Intergenic 165214 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 194.75-12 chr12 59383003 59383227 + 1.25 NA Intergenic Intergenic -212914 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 291.25 chr1 62829489 62829806 + 1.25 NA intron (NM_178221, intron 7 of 10) intron (NM_178221, intron 7 of 10) 45515 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 159.25-9 chr10 115047062 115047350 + 1.25 NA Intergenic MIRc|SINE|MIR -46159 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 123.5-45 chr18 80052602 80052873 + 1.25 NA Intergenic L1PB4|LINE|L1 -14519 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 226.5-4 chr1 87152247 87152540 + 1.25 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 20467 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 120.75-68 chr3 128067609 128067717 + 1.25 NA intron (NM_013336, intron 10 of 11) intron (NM_013336, intron 10 of 11) -8147 NR_046645 100874089 Hs.581603 NR_046645 ENSG00000239608 RUVBL1-AS1 - RUVBL1 antisense RNA 1 ncRNA 241-21 chr20 58763601 58763964 + 1.25 NA Intergenic Intergenic -9643 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 317.25-12 chr20 46296329 46296821 + 1.25 NA intron (NM_021248, intron 1 of 11) intron (NM_021248, intron 1 of 11) 11923 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 211.25-14 chr17 66772914 66773189 + 1.25 NA intron (NM_002737, intron 13 of 16) FLAM_A|SINE|Alu -14021 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 132.5-2 chr1 92759119 92759296 + 1.25 NA intron (NM_001308248, intron 1 of 18) AluSx3|SINE|Alu 25901 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 219.75-38 chr6 163392967 163393305 + 1.25 NA Intergenic Intergenic 20814 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated ncRNA 192.75-18 chr2 210072809 210073079 + 1.25 NA intron (NM_001307976, intron 6 of 13) L1MC4|LINE|L1 43022 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 123.5-73 chr3 180641727 180641936 + 1.25 NA intron (NM_181426, intron 13 of 19) intron (NM_181426, intron 13 of 19) 37658 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 163.75-74 chr8 137994474 137994700 + 1.25 NA intron (NR_161374, intron 2 of 7) L1PA15|LINE|L1 88958 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 174-4 chr1 207432016 207432209 + 1.25 NA Intergenic L3|LINE|CR1 -22188 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 124.25-63 chr4 70529276 70529512 + 1.25 NA intron (NM_212557, intron 7 of 8) intron (NM_212557, intron 7 of 8) 10825 NM_001286731 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 231.25-30 chr4 129263128 129263416 + 1.25 NA Intergenic L2c|LINE|L2 167120 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 213-22 chr19 5969235 5969480 + 1.25 NA intron (NM_003624, intron 1 of 16) intron (NM_003624, intron 1 of 16) 8783 NM_007322 8498 Hs.531752 NM_003624 ENSG00000031823 RANBP3 - RAN binding protein 3 protein-coding 218.75-41 chr9 4327123 4327380 + 1.25 NA Intergenic Intergenic -27183 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 185.5-38 chr2 18136330 18136520 + 1.25 NA Intergenic Intergenic 257758 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 168.75-63 chr8 132032083 132032325 + 1.25 NA intron (NM_001080399, intron 11 of 13) intron (NM_001080399, intron 11 of 13) 27178 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 131-20 chr14 67215810 67215926 + 1.25 NA intron (NM_173526, intron 6 of 8) intron (NM_173526, intron 6 of 8) -25567 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 219.75-15 chr2 21886487 21886756 + 1.25 NA Intergenic Intergenic -175969 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 200.25-40 chr6 70316073 70316381 + 1.25 NA Intergenic Intergenic -13143 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 162-2 chr1 112137319 112137520 + 1.25 NA Intergenic CR1-3_Croc|LINE|CR1 146883 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 170-24 chr2 200047955 200048136 + 1.25 NA Intergenic L1MA7|LINE|L1 -92554 NR_004862 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 141.75-18 chr12 97814488 97814661 + 1.25 NA Intergenic Intergenic -58057 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 178-40 chr4 94272955 94273206 + 1.25 NA intron (NM_001128429, intron 11 of 23) AluJb|SINE|Alu 19771 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 198-3 chr1 104001744 104002032 + 1.25 NA Intergenic Intergenic -71135 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 186.75-51 chr5 151855843 151856051 + 1.25 NA intron (NM_000171, intron 5 of 8) intron (NM_000171, intron 5 of 8) 68904 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 190-22 chr2 24319672 24319861 + 1.25 NA intron (NM_001348182, intron 2 of 38) intron (NM_001348182, intron 2 of 38) 40770 NM_001348183 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 131.75-38 chr18 6207924 6208071 + 1.25 NA intron (NM_001365769, intron 12 of 16) AluJb|SINE|Alu -48747 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 115.5-28 chr13 21813681 21813774 + 1.25 NA Intergenic Intergenic 64433 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 130.5-45 chr2 50517115 50517376 + 1.25 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) -169489 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 196.25-15 chr14 51889253 51889557 + 1.25 NA intron (NM_001243773, intron 2 of 3) L1MB7|LINE|L1 28793 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 288.5-7 chr14 71991130 71991580 + 1.25 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 57828 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 221-35 chr4 165043387 165043665 + 1.25 NA Intergenic MER54A|LTR|ERVL 11527 NM_001258025 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 204-38 chr7 94933248 94933541 + 1.25 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 23496 NM_001166163 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 207.25-12 chr18 59026113 59026370 + 1.25 NA Intergenic Intergenic -9438 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 143.25-13 chr11 71468726 71468876 + 1.25 NA intron (NM_018161, intron 5 of 20) L1MEd|LINE|L1 -4702 NR_106812 102466728 NR_106812 ENSG00000278349 MIR6754 hsa-mir-6754 microRNA 6754 ncRNA 219.5-40 chr5 45045910 45046115 + 1.25 NA Intergenic Intergenic 237065 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 161.25-18 chr12 122509558 122509710 + 1.25 NA intron (NR_036434, intron 8 of 10) intron (NR_036434, intron 8 of 10) -8702 NM_001350937 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 261.25-5 chr2 198725907 198726268 + 1.25 NA Intergenic Intergenic -350990 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 319.75-2 chr15 26107499 26107842 + 1.25 NA Intergenic L1M5|LINE|L1 -8143 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 136.25-74 chr7 98549696 98549964 + 1.25 NA Intergenic MIRb|SINE|MIR -67455 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 167.25-22 chr13 108023630 108023863 + 1.25 NA Intergenic Intergenic -156250 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 148-61 chr7 92929345 92929536 + 1.25 NA Intergenic L1M3c|LINE|L1 -92813 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 292-7 chr18 65852536 65852871 + 1.25 NA intron (NM_001362438, intron 7 of 11) MLT1J|LTR|ERVL-MaLR 101691 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 211.25-33 chr6 50967591 50967861 + 1.25 NA Intergenic Intergenic 148855 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 152-60 chr8 10518298 10518461 + 1.25 NA Intergenic Intergenic -7153 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 113.25-76 chr2 183553911 183554020 + 1.25 NA Intergenic Intergenic 429522 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 140.5-62 chr3 41156721 41156902 + 1.25 NA Intergenic MamGypLTR3a|LTR|Gypsy -42694 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 120-74 chr5 107869486 107869599 + 1.25 NA intron (NM_001163315, intron 8 of 8) intron (NM_001163315, intron 8 of 8) -198605 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 238.25-29 chr8 111554419 111554747 + 1.25 NA Intergenic Intergenic 177944 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 189.75-50 chr9 93730250 93730443 + 1.25 NA Intergenic Intergenic -89011 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 169-51 chr8 70973597 70973764 + 1.25 NA Intergenic L1PB1|LINE|L1 304341 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 123.75-31 chr12 91981872 91982026 + 1.25 NA Intergenic L1PA16|LINE|L1 159764 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 171-54 chr7 80557242 80557433 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -44870 NM_001371074 208.25-9 chr15 63796422 63796636 + 1.25 NA intron (NM_003922, intron 1 of 77) MER4B|LTR|ERV1 37419 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 163-45 chr6 26380741 26381032 + 1.25 NA Intergenic Intergenic -2222 NM_181531 10385 Hs.373938 NM_006995 ENSG00000124508 BTN2A2 BT2.2|BTF2|BTN2.2 butyrophilin subfamily 2 member A2 protein-coding 162.5-75 chr5 136103166 136103339 + 1.25 NA Intergenic MIRb|SINE|MIR -22654 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 232-14 chr21 28453794 28454040 + 1.25 NA Intergenic Intergenic -85401 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 205.25-43 chr8 48719555 48719787 + 1.25 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 15597 NR_024605 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 213.25-17 chr16 86027687 86027921 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR 109457 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 116.25-85 chr7 81780418 81780545 + 1.25 NA Intergenic Intergenic -10434 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 209.75-19 chr2 13862212 13862398 + 1.25 NA Intergenic Intergenic 538653 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 221.25-12 chr18 13640572 13640862 + 1.25 NA intron (NM_001003675, intron 2 of 2) intron (NM_001003675, intron 2 of 2) -1041 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 150-73 chr8 73949409 73949689 + 1.25 NA intron (NM_005648, intron 3 of 3) L1MB5|LINE|L1 22359 NM_001204862 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 234.75-15 chr14 63534599 63534853 + 1.25 NA intron (NM_001354926, intron 2 of 2) AluJo|SINE|Alu -8058 NR_158218 112268140 Hs.632347 NR_158218 LOC112268140 - loricrin-like ncRNA 115-21 chr11 131874664 131874862 + 1.25 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -35161 NR_147850 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 187.5-3 chr1 109210851 109211003 + 1.25 NA Intergenic Intergenic -2966 NM_001330669 6301 Hs.531176 NM_006513 ENSG00000031698 SARS NEDMAS|SERRS|SERS seryl-tRNA synthetase protein-coding 167.25-33 chr19 32299903 32300038 + 1.25 NA Intergenic L1MA7|LINE|L1 -45640 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 180-73 chr9 90481642 90481954 + 1.25 NA intron (NR_034157, intron 5 of 5) intron (NR_034157, intron 5 of 5) -48309 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 158.5-96 chr7 77774125 77774333 + 1.25 NA intron (NM_198467, intron 6 of 7) intron (NM_198467, intron 6 of 7) 24205 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 191.25-38 chr20 48343912 48344219 + 1.25 NA Intergenic LTR16E2|LTR|ERVL -15846 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 185.5-32 chr16 52854581 52854781 + 1.25 NA Intergenic L1PA16|LINE|L1 198192 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 204.75-44 chr7 97529695 97529900 + 1.25 NA Intergenic MER21B|LTR|ERVL -202289 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 321.75-6 chr17 71219586 71220103 + 1.25 NA Intergenic Intergenic -17665 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 250-29 chr8 31875906 31876168 + 1.25 NA intron (NM_013962, intron 1 of 4) (AAAC)n|Simple_repeat|Simple_repeat -149699 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 177.75-5 chr10 89901397 89901664 + 1.25 NA intron (NR_149079, intron 1 of 1) L3|LINE|CR1 13396 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 215.5-44 chr6 75117878 75118087 + 1.25 NA intron (NM_080645, intron 31 of 50) intron (NM_080645, intron 31 of 50) 10800 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 206.75-28 chr6 76994524 76994851 + 1.25 NA Intergenic Intergenic -401064 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 158.5-11 chr1 231777408 231777609 + 1.25 NA intron (NM_001164547, intron 6 of 7) intron (NM_001164547, intron 6 of 7) 41009 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 197.5-13 chr12 101655268 101655467 + 1.25 NA intron (NM_206821, intron 16 of 28) L1MCa|LINE|L1 -42273 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 204.5-7 chr11 81528845 81529198 + 1.25 NA Intergenic L1PA14|LINE|L1 361815 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 123.75-52 chr2 15450741 15450853 + 1.25 NA intron (NR_052013, intron 21 of 50) intron (NR_052013, intron 21 of 50) 110537 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 207-56 chr9 82843642 82843833 + 1.25 NA Intergenic AluJr4|SINE|Alu 219405 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 187.5-46 chr2 223913673 223913911 + 1.25 NA intron (NM_020830, intron 2 of 11) intron (NM_020830, intron 2 of 11) 31543 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 244.25-2 chr10 51025101 51025431 + 1.25 NA intron (NM_001098512, intron 1 of 17) LTR78|LTR|ERV1 34378 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 136-12 chr11 115510378 115510521 + 1.25 NA Intergenic Intergenic -6034 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 141.25-10 chr10 61517863 61518055 + 1.25 NA Intergenic L1PA15|LINE|L1 37918 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 133.25-42 chr2 99624325 99624448 + 1.25 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -134369 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 178.25-14 chr10 86442378 86442542 + 1.25 NA intron (NM_001318328, intron 17 of 18) intron (NM_001318328, intron 17 of 18) -75665 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 182.25-53 chr7 81326982 81327191 + 1.25 NA Intergenic L1MB7|LINE|L1 234733 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 201.25-11 chr15 25666942 25667275 + 1.25 NA Intergenic Intergenic 181717 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 131-81 chr8 131916372 131916522 + 1.25 NA promoter-TSS (NM_001323556) promoter-TSS (NM_001323556) -326 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 201.75-30 chr5 79103394 79103659 + 1.25 NA Intergenic Intergenic -8283 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 162.5-67 chr5 41093420 41093571 + 1.25 NA Intergenic Intergenic -22153 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 204.5-42 chr4 30514605 30514842 + 1.25 NA Intergenic MIRb|SINE|MIR -205646 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 228.75-40 chr8 129296039 129296335 + 1.25 NA Intergenic Intergenic -54947 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 145.25-31 chr16 60998712 60998895 + 1.25 NA Intergenic L1MC|LINE|L1 56963 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 208.25-13 chr2 127633394 127633671 + 1.25 NA intron (NM_001080527, intron 39 of 46) intron (NM_001080527, intron 39 of 46) -12332 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 141.25-18 chr11 113457934 113458131 + 1.25 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) -7944 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 160.25-46 chr4 91583426 91583601 + 1.25 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 693789 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 231.25-6 chr10 87678095 87678353 + 1.25 NA intron (NM_001015880, intron 1 of 12) L1MA4A|LINE|L1 18346 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 246.75-10 chr16 81301676 81302058 + 1.25 NA Intergenic Intergenic -13099 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 170.5-6 chr1 164153475 164153718 + 1.25 NA Intergenic Intergenic -405764 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 337.75-5 chr2 133163877 133164410 + 1.25 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -102052 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 144.75-74 chr6 118495048 118495235 + 1.25 NA intron (NM_001042475, intron 5 of 12) L1MCa|LINE|L1 -6232 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 116.25-70 chr5 412167 412281 + 1.25 NA intron (NM_020731, intron 4 of 11) L1MD|LINE|L1 30936 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 210-4 chr11 84887105 84887408 + 1.25 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 36165 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 178.75-20 chr16 63681688 63682159 + 1.25 NA Intergenic Intergenic 1440140 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 200.5-55 chr6 73570090 73570312 + 1.25 NA Intergenic Intergenic -49169 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 236.5-2 chr1 34610705 34610997 + 1.25 NA Intergenic Intergenic 58843 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 170-50 chr8 40809011 40809245 + 1.25 NA intron (NM_024645, intron 2 of 6) L1PA16|LINE|L1 88698 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 219.25-5 chr10 48407389 48407594 + 1.25 NA intron (NM_001323302, intron 5 of 13) L3|LINE|CR1 5879 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 177.25-49 chr7 33902227 33902421 + 1.25 NA Intergenic Intergenic -2591 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 154.25-32 chr16 24053382 24053542 + 1.25 NA intron (NM_002738, intron 5 of 16) MER58A|DNA|hAT-Charlie -149654 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 171.75-25 chr19 33821384 33821670 + 1.25 NA Intergenic AluSx1|SINE|Alu 24657 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 149.75-32 chr20 38688959 38689121 + 1.25 NA Intergenic Intergenic -35446 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 222.5-22 chr18 3248831 3249044 + 1.25 NA intron (NM_006471, intron 1 of 3) intron (NM_006471, intron 1 of 3) 1407 NM_006471 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 172.5-65 chr5 134457193 134457557 + 1.25 NA Intergenic L1PA5|LINE|L1 -22328 NR_105044 102546229 NR_105044 LOC102546229 - uncharacterized LOC102546229 ncRNA 252.5-16 chr18 35325796 35326188 + 1.25 NA Intergenic Intergenic 18428 NM_006965 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 133-17 chr14 20872694 20872853 + 1.25 NA Intergenic L1M6|LINE|L1 -18630 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 224.25-15 chr14 99828286 99828584 + 1.25 NA intron (NM_004434, intron 1 of 21) MER44B|DNA|TcMar-Tigger 35022 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 268.5-6 chr12 58241338 58241720 + 1.25 NA Intergenic Intergenic 153637 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 273.5-6 chr12 21107608 21108049 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger -23366 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 177.5-57 chr6 134195712 134195955 + 1.25 NA intron (NM_001143676, intron 3 of 13) intron (NM_001143676, intron 3 of 13) -17972 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 116.5-41 chr16 53999182 53999307 + 1.25 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -40149 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 383 chr14 61283249 61283763 + 1.25 NA Intergenic Intergenic -2168 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 207.5-18 chr14 81626762 81627048 + 1.25 NA Intergenic Intergenic -3844 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 170.25-4 chr1 211885775 211886142 + 1.25 NA Intergenic Intergenic 54997 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 290-20 chr8 127280863 127281195 + 1.25 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 36392 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 201.5-19 chr15 67915095 67915403 + 1.25 NA Intergenic Intergenic -75204 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 167.25-35 chr2 46351192 46351451 + 1.25 NA intron (NM_001430, intron 2 of 15) intron (NM_001430, intron 2 of 15) 42846 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 221.25-14 chr2 65946605 65946863 + 1.25 NA Intergenic Intergenic 411594 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 172-35 chr5 22795535 22795767 + 1.25 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 57693 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 296-17 chr5 21198392 21198795 + 1.25 NA Intergenic Intergenic -260887 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 334.25 chr1 171891064 171891539 + 1.25 NA intron (NM_001278252, intron 1 of 14) L1MC3|LINE|L1 27109 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 208-2 chr1 154913434 154913762 + 1.25 NA Intergenic Intergenic 23121 NM_001323011 10654 Hs.30954 NM_006556 ENSG00000163344 PMVK HUMPMKI|PMK|PMKA|PMKASE|POROK1 phosphomevalonate kinase protein-coding 113.75-48 chr18 56833379 56833677 + 1.25 NA intron (NM_015285, intron 20 of 27) intron (NM_015285, intron 20 of 27) 182143 NM_015285 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 143.25-50 chr3 162193045 162193203 + 1.25 NA Intergenic Intergenic 696316 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 210.5-5 chr10 66560170 66560440 + 1.25 NA intron (NM_001127384, intron 10 of 17) MIRb|SINE|MIR -365731 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 202.75-23 chr5 108357390 108357591 + 1.25 NA intron (NM_001163315, intron 3 of 8) L1MC|LINE|L1 24608 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 168.75-37 chr3 150338170 150338392 + 1.25 NA Intergenic HAL1|LINE|L1 -14534 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 117.25-93 chr8 111603068 111603173 + 1.25 NA Intergenic Intergenic 226481 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 156.5-96 chrX 16803083 16803388 + 1.25 NA intron (NM_001168683, intron 1 of 7) intron (NM_001168683, intron 1 of 7) 16769 NM_018360 55787 Hs.555961 NM_018360 ENSG00000086712 TXLNG CXorf15|ELRG|FIAT|LSR5|TXLNGX taxilin gamma protein-coding 404-7 chr3 164801138 164801696 + 1.25 NA intron (NR_126405, intron 1 of 3) THE1A|LTR|ERVL-MaLR 30063 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 140-36 chr2 188323039 188323226 + 1.25 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 25640 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 155-12 chr12 10415888 10416059 + 1.25 NA intron (NM_002261, intron 5 of 6) MER44B|DNA|TcMar-Tigger 4622 NM_007333 3823 Hs.654362 NM_002261 ENSG00000205810 KLRC3 NKG2-E|NKG2E killer cell lectin like receptor C3 protein-coding 218-17 chr16 10966357 10966590 + 1.25 NA intron (NM_015226, intron 3 of 22) L1ME3|LINE|L1 21909 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 186-53 chr8 40625403 40625682 + 1.25 NA intron (NM_001135731, intron 4 of 5) L2a|LINE|L2 272284 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 289.25-4 chr10 55635085 55635352 + 1.25 NA Intergenic Intergenic -7276 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 169-22 chr19 50955255 50955556 + 1.25 NA Intergenic Intergenic -2367 NM_012427 25818 Hs.50915 NM_012427 ENSG00000167754 KLK5 KLK-L2|KLKL2|SCTE kallikrein related peptidase 5 protein-coding 180.5-66 chr4 46378939 46379160 + 1.25 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 10330 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 325.5-8 chr3 28432175 28432610 + 1.25 NA intron (NM_001040432, intron 3 of 9) intron (NM_001040432, intron 3 of 9) 83243 NM_001324170 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 155-53 chr6 150364394 150364553 + 1.25 NA Intergenic Intergenic -4539 NM_001318495 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 184.25-28 chr22 44104129 44104379 + 1.25 NA intron (NM_001243386, intron 3 of 11) intron (NM_001243386, intron 3 of 11) 35137 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 140.5-70 chr4 32210460 32210584 + 1.25 NA Intergenic Intergenic -140516 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 245.5-17 chr20 63547250 63547525 + 1.25 NA exon (NM_080823, exon 1 of 8) exon (NM_080823, exon 1 of 8) 117 NM_080823 6725 NM_080823 ENSG00000125508 SRMS C20orf148|PTK70|SRM|dJ697K14.1 src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites protein-coding 249.25-21 chr6 170089516 170089838 + 1.25 NA Intergenic Intergenic -70965 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 247.5-4 chr10 28419361 28419842 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR 76212 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 251-19 chr3 97707330 97707565 + 1.25 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -57074 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 251-28 chr7 9999335 9999569 + 1.25 NA Intergenic L1MB1|LINE|L1 365182 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 187.5-76 chr7 47551492 47551896 + 1.25 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 30417 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 157-18 chr13 63519186 63519317 + 1.25 NA Intergenic L2|LINE|L2 -191157 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 212.5-10 chr12 131133519 131133733 + 1.25 NA intron (NM_198827, intron 21 of 24) intron (NM_198827, intron 21 of 24) -31385 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 223.25-21 chr4 126484258 126484595 + 1.25 NA Intergenic Intergenic 977167 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 196 chr1 92670549 92670788 + 1.25 NA intron (NM_001350198, intron 10 of 19) L2a|LINE|L2 114440 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 197.25-52 chr6 75689441 75689744 + 1.25 NA intron (NM_001100409, intron 15 of 22) Tigger3a|DNA|TcMar-Tigger -59647 NM_001368136 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 159.25-28 chr18 23299899 23300160 + 1.25 NA intron (NM_032933, intron 14 of 14) intron (NM_032933, intron 14 of 14) 137932 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 290.75-12 chr8 35440577 35440904 + 1.25 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -103652 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 177.75-9 chr12 97145606 97145846 + 1.25 NA Intergenic L2a|LINE|L2 238260 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 128.25-63 chr5 66860464 66860680 + 1.25 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 31799 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 186.5-50 chr5 145789981 145790287 + 1.25 NA intron (NM_205846, intron 5 of 6) L1MA7|LINE|L1 45208 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 114.75-17 chr10 111405561 111405714 + 1.25 NA Intergenic MLT1N2|LTR|ERVL-MaLR 291346 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 174.5-74 chr7 42184288 42184504 + 1.25 NA intron (NM_000168, intron 2 of 14) L2b|LINE|L2 52813 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 127-98 chr8 142115830 142115972 + 1.25 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -60438 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 197.75-38 chr5 21427171 21427368 + 1.25 NA Intergenic Intergenic -32211 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 220.75 chr1 4014304 4014513 + 1.25 NA Intergenic L1ME5|LINE|L1 -65428 NR_147024 105376672 Hs.435087 NR_147024 ENSG00000226374 LINC01345 - long intergenic non-protein coding RNA 1345 ncRNA 158.75-71 chr8 91734804 91735074 + 1.25 NA Intergenic Intergenic 282741 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 129.5-92 chr8 138091256 138091457 + 1.25 NA Intergenic L1MEc|LINE|L1 -7811 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 235.5-14 chr11 121773023 121773343 + 1.25 NA Intergenic Intergenic 320869 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 197.25-20 chr13 43696013 43696233 + 1.25 NA intron (NM_001347969, intron 1 of 16) L1MB7|LINE|L1 -66646 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 185.25-50 chr8 57948137 57948404 + 1.25 NA Intergenic L1PA15-16|LINE|L1 -30088 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 176-26 chr3 10156125 10156291 + 1.25 NA Intergenic Intergenic -8711 NM_001570 3656 Hs.449207 NM_001570 ENSG00000134070 IRAK2 IRAK-2 interleukin 1 receptor associated kinase 2 protein-coding 222-16 chr15 60944467 60944681 + 1.25 NA intron (NM_134261, intron 1 of 10) AluSx1|SINE|Alu 263005 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 186.25-39 chr4 58120944 58121138 + 1.25 NA Intergenic Intergenic 415287 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 122.5-60 chr3 80838871 80839020 + 1.25 NA Intergenic Intergenic 68241 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 193-2 chr1 115238571 115238878 + 1.25 NA Intergenic MIR3|SINE|MIR -44310 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 126.75-3 chr1 75820752 75820868 + 1.25 NA intron (NM_002440, intron 6 of 19) L1P1|LINE|L1 23928 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 257.25 chr1 29223790 29224080 + 1.25 NA intron (NM_001349712, intron 1 of 11) intron (NM_001349712, intron 1 of 11) 6999 NM_001349716 51102 Hs.183646 NM_016011 ENSG00000116353 MECR CGI-63|DYTOABG|ETR1|FASN2B|NRBF1 mitochondrial trans-2-enoyl-CoA reductase protein-coding 282.5-7 chr13 59455684 59456042 + 1.25 NA Intergenic CR1-L3A_Croc|LINE|CR1 -556855 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 204-17 chr17 66108298 66108649 + 1.25 NA intron (NM_001353129, intron 6 of 26) L1MA3|LINE|L1 83419 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 172-25 chr20 8278057 8278256 + 1.25 NA intron (NM_182734, intron 2 of 32) L1ME4b|LINE|L1 29452 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 181-37 chr4 22690642 22690813 + 1.25 NA Intergenic Intergenic -2187 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 140.75-71 chr9 28406367 28406713 + 1.25 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 312765 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 132.25-61 chr3 135456788 135456973 + 1.25 NA Intergenic Intergenic -508848 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 343-8 chr3 116412777 116413194 + 1.25 NA intron (NM_001318915, intron 1 of 8) MER5A|DNA|hAT-Charlie 32502 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 378.75-2 chr5 131968760 131969182 + 1.25 NA intron (NM_015256, intron 15 of 20) intron (NM_015256, intron 15 of 20) -23308 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 272.25-9 chr19 57678251 57678638 + 1.25 NA exon (NM_152677, exon 5 of 5) exon (NM_152677, exon 5 of 5) -3533 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 129.25-8 chr10 59461525 59461726 + 1.25 NA Intergenic Intergenic -98444 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 206.5-46 chr6 54303679 54303944 + 1.25 NA Intergenic L1MA8|LINE|L1 -4630 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 167-47 chr4 42458514 42458703 + 1.25 NA intron (NM_001105529, intron 26 of 35) intron (NM_001105529, intron 26 of 35) 61120 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 130-78 chr7 100719619 100719836 + 1.25 NA promoter-TSS (NM_000799) promoter-TSS (NM_000799) -741 NM_000799 2056 Hs.2303 NM_000799 ENSG00000130427 EPO DBAL|ECYT5|EP|MVCD2 erythropoietin protein-coding 136.75-53 chr2 238177646 238177814 + 1.25 NA intron (NM_030768, intron 9 of 11) L1MB3|LINE|L1 18760 NM_001291832 151176 Hs.24951 NM_152521 ENSG00000178752 ERFE C1QTNF15|CTRP15|FAM132B erythroferrone protein-coding 164.75-19 chr12 43996924 43997206 + 1.25 NA intron (NM_001286212, intron 3 of 6) MLT1K|LTR|ERVL-MaLR 160984 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 114-58 chr3 148180370 148180595 + 1.25 NA Intergenic Intergenic -100409 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 196.75-22 chr22 20024287 20024517 + 1.25 NA intron (NM_001322167, intron 1 of 6) intron (NM_001322167, intron 1 of 6) 3292 NM_152906 128989 Hs.474233 NM_152906 ENSG00000183597 TANGO2 C22orf25|MECRCN transport and golgi organization 2 homolog protein-coding 193-38 chr3 33484962 33485232 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -44692 NM_001128161 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 201.5-3 chr1 153455445 153455778 + 1.25 NA Intergenic Intergenic 5040 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 196-3 chr10 19875860 19876105 + 1.25 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 59550 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 234.25-28 chr5 100542112 100542435 + 1.25 NA intron (NM_198507, intron 1 of 2) intron (NM_198507, intron 1 of 2) 6899 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 273.25-15 chr6 166808990 166809344 + 1.25 NA intron (NM_001318936, intron 2 of 22) L1M4c|LINE|L1 53358 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 199.25-2 chr1 109500659 109500877 + 1.25 NA TTS (NM_001134402) TTS (NM_001134402) 6674 NM_001134404 284613 Hs.514682 NM_182580 ENSG00000174151 CYB561D1 - cytochrome b561 family member D1 protein-coding 130.75-43 chr2 194235126 194235247 + 1.25 NA Intergenic Intergenic -109083 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 139.25-44 chr18 22006418 22006602 + 1.25 NA Intergenic Intergenic 162458 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 129-23 chr14 84638302 84638489 + 1.25 NA Intergenic L1MB7|LINE|L1 -633537 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 210.75-25 chr4 59988787 59989184 + 1.25 NA Intergenic Intergenic -933634 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 322.25-2 chr1 192063854 192064160 + 1.25 NA Intergenic Intergenic -94455 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 168.25-43 chr4 12549467 12549686 + 1.25 NA Intergenic Intergenic 326125 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 243.5-8 chr14 57870461 57870846 + 1.25 NA Intergenic MIRb|SINE|MIR -4561 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 393.5-3 chr8 131818594 131819075 + 1.25 NA Intergenic MIRb|SINE|MIR -85259 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 275.75-13 chr2 107806166 107806538 + 1.25 NA intron (NR_126370, intron 2 of 4) MER77B|LTR|ERVL 20417 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 268.25-18 chr6 152542090 152542491 + 1.25 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 94561 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 195.25-23 chr2 42174412 42174577 + 1.25 NA intron (NM_001145076, intron 1 of 21) AluSx|SINE|Alu -4263 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 172.75-2 chr1 68356204 68356411 + 1.25 NA Intergenic L2a|LINE|L2 93647 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 116.5-34 chr13 79232904 79233055 + 1.25 NA Intergenic Intergenic 173242 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 219.25-16 chr2 53176227 53176469 + 1.25 NA Intergenic Intergenic -473733 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 189.75-18 chr19 17515059 17515297 + 1.25 NA intron (NM_012088, intron 1 of 4) L2|LINE|L2 -3289 NR_147835 100507551 Hs.363138 NR_147835 ENSG00000269439 LOC100507551 - uncharacterized LOC100507551 ncRNA 258.5-21 chr8 118325361 118325736 + 1.25 NA intron (NM_001101676, intron 4 of 4) L1MA9|LINE|L1 -213729 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 176.25-30 chr17 61488902 61489084 + 1.25 NA Intergenic Intergenic 32505 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 160.5-80 chr8 138889051 138889189 + 1.25 NA intron (NM_152888, intron 1 of 64) MIRb|SINE|MIR 24921 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 217-11 chr18 73917223 73917578 + 1.25 NA Intergenic L1M4b|LINE|L1 230434 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 204-5 chr1 235461793 235462049 + 1.25 NA intron (NM_152490, intron 7 of 11) MER47A|DNA|TcMar-Tigger 42531 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 217.75-21 chr2 128857034 128857394 + 1.25 NA Intergenic L1ME1|LINE|L1 -7386 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 325.25-5 chr18 61876146 61876559 + 1.25 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 16655 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 236.5-11 chr12 1435118 1435325 + 1.25 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -65270 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 266-3 chr11 45023864 45024271 + 1.25 NA Intergenic L2b|LINE|L2 50165 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LINC02685 - long intergenic non-protein coding RNA 2685 ncRNA 170.25-15 chr14 21195350 21195577 + 1.25 NA Intergenic MER50B|LTR|ERV1 10040 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 167.5-10 chr10 96399611 96399749 + 1.25 NA intron (NM_012465, intron 10 of 20) intron (NM_012465, intron 10 of 20) -40315 NM_001284322 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 222.25-28 chr7 41978214 41978428 + 1.25 NA intron (NM_000168, intron 11 of 14) intron (NM_000168, intron 11 of 14) 258888 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 248.25-8 chr14 66507079 66507299 + 1.25 NA promoter-TSS (NM_020806) promoter-TSS (NM_020806) -218 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 148.25-70 chr8 74166873 74167091 + 1.25 NA Intergenic Intergenic 154379 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 177-31 chr2 226509764 226510193 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR 148815 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 161.75-9 chr12 10618012 10618184 + 1.25 NA TTS (NM_018423) TTS (NM_018423) -4489 NM_018048 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 167.5-86 chr8 136060296 136060506 + 1.25 NA Intergenic L1PA16|LINE|L1 -470397 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 187-25 chr2 55550542 55550889 + 1.25 NA intron (NM_020463, intron 14 of 14) intron (NM_020463, intron 14 of 14) 31120 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 170-52 chr8 121372426 121372585 + 1.25 NA Intergenic Intergenic -266841 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 132.25-59 chr3 27575748 27575968 + 1.25 NA Intergenic MER21A|LTR|ERVL -91474 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 149.5-57 chr2 157734906 157735088 + 1.25 NA Intergenic L1ME3A|LINE|L1 103633 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 140.25-12 chr11 47974239 47974444 + 1.25 NA Intergenic Intergenic -6218 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 172.25-68 chr7 15722734 15722908 + 1.25 NA Intergenic Intergenic 34443 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 150.5-79 chr6 43496124 43496327 + 1.25 NA intron (NM_001350567, intron 2 of 10) intron (NM_001350567, intron 2 of 10) 6467 NM_001350568 93643 Hs.520145 NM_080604 ENSG00000137221 TJAP1 PILT|TJP4 tight junction associated protein 1 protein-coding 170.25-16 chr14 22010967 22011103 + 1.25 NA Intergenic Intergenic -340018 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 229.5-38 chr4 140233717 140233928 + 1.25 NA Intergenic Intergenic -23486 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 144-32 chr2 113828115 113828250 + 1.25 NA Intergenic MIRb|SINE|MIR -61752 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 244-15 chr3 20181061 20181322 + 1.25 NA intron (NR_131179, intron 2 of 6) intron (NR_131179, intron 2 of 6) 5015 NM_001199256 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 193.5-25 chr18 67587945 67588211 + 1.25 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -71358 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 199.75-14 chr18 21631921 21632097 + 1.25 NA 3' UTR (NM_006938, exon 4 of 4) 3' UTR (NM_006938, exon 4 of 4) 19695 NM_006938 6632 Hs.464734 NM_006938 ENSG00000167088 SNRPD1 HsT2456|SMD1|SNRPD|Sm-D1 small nuclear ribonucleoprotein D1 polypeptide protein-coding 213.5-9 chr11 101401464 101401829 + 1.25 NA Intergenic L1PREC2|LINE|L1 118259 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 125-36 chr17 59428603 59428840 + 1.25 NA Intergenic L2a|LINE|L2 62638 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 166.25-38 chr22 46647800 46648016 + 1.25 NA intron (NM_015124, intron 3 of 18) intron (NM_015124, intron 3 of 18) 27522 NM_015124 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 188.5-3 chr1 70947003 70947247 + 1.25 NA intron (NR_028293, intron 2 of 4) MIRb|SINE|MIR -99381 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 279.5-11 chr6 64616607 64616952 + 1.25 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -684639 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 280.25-11 chr20 56067460 56067772 + 1.25 NA Intergenic L1ME4a|LINE|L1 -62097 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 259.75-10 chr2 35311388 35311864 + 1.25 NA Intergenic Intergenic -159779 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 249-31 chr4 53274067 53274389 + 1.25 NA intron (NM_152540, intron 3 of 8) MIRc|SINE|MIR 91833 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 186.25-33 chr20 11626380 11626788 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie 244131 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 209.5 chr1 64902088 64902327 + 1.25 NA intron (NM_001321852, intron 1 of 24) MIRc|SINE|MIR 64342 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 144.75-47 chr2 221841794 221841917 + 1.25 NA Intergenic L1M5|LINE|L1 -267653 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 167.25-32 chr18 9465967 9466346 + 1.25 NA Intergenic L1M4a1|LINE|L1 -9357 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 163.75-41 chr3 72799467 72799701 + 1.25 NA intron (NM_018130, intron 9 of 10) intron (NM_018130, intron 9 of 10) 48861 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 158-3 chr1 216237142 216237344 + 1.25 NA intron (NM_206933, intron 13 of 71) intron (NM_206933, intron 13 of 71) 164778 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 121.75-59 chr3 186116728 186116964 + 1.25 NA Intergenic L1ME3A|LINE|L1 -7757 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 270.75 chr10 63390882 63391188 + 1.25 NA intron (NM_001322258, intron 1 of 24) L1M2|LINE|L1 -17987 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 151-45 chr4 43306321 43306567 + 1.25 NA Intergenic Intergenic 186099 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 184.25-16 chr19 34819647 34819899 + 1.25 NA intron (NR_033982, intron 4 of 5) L2a|LINE|L2 13096 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 156.5-83 chr8 76605137 76605353 + 1.25 NA Intergenic Intergenic -76002 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 169.25-12 chr11 91747785 91748005 + 1.25 NA Intergenic LTR39|LTR|ERV1 -477139 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 257-20 chr8 30600076 30600420 + 1.25 NA intron (NM_001348353, intron 6 of 6) intron (NM_001348353, intron 6 of 6) -38332 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 181.5-67 chr7 44074166 44074395 + 1.25 NA promoter-TSS (NR_106897) promoter-TSS (NR_106897) -847 NR_106897 102465504 NR_106897 ENSG00000283969 MIR6838 hsa-mir-6838 microRNA 6838 ncRNA 128-10 chr11 96231184 96231408 + 1.25 NA intron (NM_032427, intron 1 of 4) L2c|LINE|L2 -110142 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 184.5-79 chr8 109720817 109721014 + 1.25 NA Intergenic Intergenic -29124 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 312.5-13 chr5 25617064 25617682 + 1.25 NA Intergenic HAL1ME|LINE|L1 426420 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 308.25-10 chr8 53015796 53016076 + 1.25 NA Intergenic Intergenic 76028 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 156-35 chr18 6721495 6721698 + 1.25 NA Intergenic L2c|LINE|L2 -8120 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 117-60 chr4 38572590 38572715 + 1.25 NA non-coding (NR_146991, exon 3 of 3) non-coding (NR_146991, exon 3 of 3) 8649 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 192-25 chr18 9096135 9096426 + 1.25 NA Intergenic Intergenic -6419 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 294.5-4 chr1 175812337 175812669 + 1.25 NA Intergenic L1PA13|LINE|L1 -64840 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 190.75-47 chr6 55684098 55684330 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR -105000 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 200.75-33 chr5 65392480 65392691 + 1.25 NA intron (NR_135689, intron 7 of 25) L1MC4|LINE|L1 89335 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 190-24 chr2 29267965 29268156 + 1.25 NA intron (NM_004304, intron 11 of 28) intron (NM_004304, intron 11 of 28) -44160 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 151.5-24 chr12 41172658 41172853 + 1.25 NA Intergenic L1M5|LINE|L1 -15565 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 511.5 chr12 4807409 4808059 + 1.25 NA Intergenic Intergenic -1442 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 393.75-5 chr2 149818102 149818604 + 1.25 NA intron (NR_145421, intron 2 of 4) intron (NR_145421, intron 2 of 4) 40838 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 165.75-58 chr5 162546331 162546553 + 1.25 NA Intergenic L1MEd|LINE|L1 478800 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 162.75-56 chr4 116323897 116324055 + 1.25 NA Intergenic Intergenic 24251 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 168.75-42 chr4 45055921 45056197 + 1.25 NA Intergenic Arthur1|DNA|hAT-Tip100 -329425 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 168.75-60 chr8 94269235 94269377 + 1.25 NA Intergenic Intergenic -6987 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 140.25-4 chr1 165367882 165368095 + 1.25 NA Intergenic LTR50|LTR|ERVL -11273 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 259.75-7 chr13 37101225 37101566 + 1.25 NA Intergenic Intergenic 4269 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 256.25-11 chr3 188530768 188531131 + 1.25 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) 37717 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 216.75-30 chr3 196060829 196061136 + 1.25 NA intron (NM_001313966, intron 11 of 16) intron (NM_001313966, intron 11 of 16) 21108 NM_001128148 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 165-42 chr4 91711491 91711674 + 1.25 NA Intergenic L1M3b|LINE|L1 565720 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 260.75-18 chr6 119709007 119709241 + 1.25 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 159316 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 154.75-63 chr8 70601455 70601636 + 1.25 NA intron (NM_001317804, intron 2 of 11) L2b|LINE|L2 6124 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 135.25-64 chr3 173004540 173004680 + 1.25 NA intron (NM_031955, intron 4 of 10) L3|LINE|CR1 136625 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 240.5-28 chr2 208692264 208692579 + 1.25 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 149779 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 155.75-45 chr4 59702234 59702399 + 1.25 NA Intergenic MIR|SINE|MIR 688743 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 129.75-28 chr15 24965667 24965815 + 1.25 NA intron (NM_001349454, intron 7 of 13) intron (NM_001349454, intron 7 of 13) 10749 NM_001349465 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 149.75-65 chr7 124069005 124069263 + 1.25 NA Intergenic L2c|LINE|L2 -36067 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 126.25-42 chr2 57080093 57080313 + 1.25 NA Intergenic Intergenic -827448 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 379.75 chr1 227282534 227283022 + 1.25 NA intron (NM_001366019, intron 1 of 36) L1MB3|LINE|L1 35714 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 170.5-83 chr8 95263732 95264052 + 1.25 NA intron (NM_001363260, intron 1 of 4) intron (NM_001363260, intron 1 of 4) -4944 NR_038208 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 127.25-79 chr5 117602784 117602893 + 1.25 NA Intergenic Intergenic -127523 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 116-59 chr6 34493172 34493317 + 1.25 NA intron (NM_020804, intron 1 of 9) LTR16|LTR|ERVL -21628 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 166-7 chr10 50856364 50856514 + 1.25 NA intron (NM_138933, intron 2 of 12) intron (NM_138933, intron 2 of 12) 29188 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 183-12 chr11 15927729 15927997 + 1.25 NA Intergenic Intergenic 41758 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 307.25-8 chr5 119124791 119125155 + 1.25 NA intron (NM_001290321, intron 9 of 43) intron (NM_001290321, intron 9 of 43) -29664 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 157.25-4 chr1 215077483 215077672 + 1.25 NA intron (NM_001017424, intron 1 of 6) L2|LINE|L2 -5160 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 231.75-32 chr9 2882740 2883074 + 1.25 NA Intergenic Intergenic -38812 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 169.75-24 chr14 74424167 74424337 + 1.25 NA intron (NM_001105579, intron 1 of 3) MIR3|SINE|MIR 1958 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 203.75-41 chr9 91425293 91425617 + 1.25 NA promoter-TSS (NM_001290000) promoter-TSS (NM_001290000) -829 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 173.75-47 chr7 10281024 10281280 + 1.25 NA Intergenic Intergenic -421524 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 206-26 chr4 108116857 108117143 + 1.25 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 49797 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 164.25-70 chrX 34347004 34347143 + 1.25 NA Intergenic Intergenic -214743 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 263-7 chr12 1366400 1366696 + 1.25 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -133943 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 189.5-4 chr10 33355995 33356180 + 1.25 NA Intergenic AluSc|SINE|Alu -21182 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 247.5-44 chr8 125160164 125160465 + 1.25 NA intron (NR_146191, intron 5 of 8) intron (NR_146191, intron 5 of 8) 68454 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 296.25-7 chr20 53371236 53371608 + 1.25 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -181348 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 234-19 chr15 91378258 91378481 + 1.25 NA Intergenic Intergenic -84970 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 368.25-8 chr8 131057537 131058005 + 1.25 NA Intergenic Intergenic -16862 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 135.25-37 chr18 9027324 9027652 + 1.25 NA Intergenic Intergenic -75211 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 222.5-12 chr13 70674365 70674748 + 1.25 NA Intergenic Intergenic -340585 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 195.75-13 chr14 50023437 50023653 + 1.25 NA intron (NR_131171, intron 6 of 8) L3|LINE|CR1 -16025 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 175.75-33 chr3 176558042 176558332 + 1.25 NA Intergenic Intergenic 43084 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 132-14 chr10 62614274 62614437 + 1.25 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 93907 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 129.25-56 chr3 145611688 145611864 + 1.25 NA Intergenic L1M3e|LINE|L1 457409 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 219.75-7 chr12 41240326 41240649 + 1.25 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 52167 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 196.75-16 chr2 15298214 15298532 + 1.25 NA intron (NR_052013, intron 40 of 50) intron (NR_052013, intron 40 of 50) 262961 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 201.75-42 chrX 63509388 63509610 + 1.25 NA intron (NR_152612, intron 1 of 2) ERV24B_Prim-int|LTR|ERV1 51596 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 174.75-3 chr1 98834007 98834264 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -170141 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 217-19 chr4 66913208 66913395 + 1.25 NA Intergenic Intergenic 508699 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 349-8 chr4 160462834 160463309 + 1.25 NA Intergenic Intergenic -685287 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 157.25-29 chr17 72293531 72293723 + 1.25 NA Intergenic Intergenic -49184 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 217-21 chr5 68659096 68659315 + 1.25 NA Intergenic L1MC4|LINE|L1 366628 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 147.25-22 chr18 2939246 2939364 + 1.25 NA intron (NM_014646, intron 6 of 19) intron (NM_014646, intron 6 of 19) 7318 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 129.25-59 chr4 161677643 161677850 + 1.25 NA intron (NM_001128428, intron 6 of 14) L1MA8|LINE|L1 -344987 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 230.5-25 chr18 60271485 60271807 + 1.25 NA Intergenic AluJr|SINE|Alu 101129 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 118.25-56 chr21 28382383 28382582 + 1.25 NA Intergenic MIR|SINE|MIR -153815 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 204.75-15 chr15 40029289 40029542 + 1.25 NA exon (NM_001013703, exon 34 of 39) exon (NM_001013703, exon 34 of 39) 9766 NM_003134 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 188.75 chr1 61404288 61404491 + 1.25 NA intron (NM_001134673, intron 8 of 10) intron (NM_001134673, intron 8 of 10) -150871 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 142.25-41 chr22 41515151 41515411 + 1.25 NA intron (NM_001098, intron 4 of 17) intron (NM_001098, intron 4 of 17) 29189 NM_001018050 171568 Hs.712617 NM_138338 ENSG00000100413 POLR3H RPC22.9|RPC8 RNA polymerase III subunit H protein-coding 352.5-11 chr6 80676050 80676514 + 1.25 NA Intergenic MER58B|DNA|hAT-Charlie 569611 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 113.25-110 chr7 104167495 104167731 + 1.25 NA TTS (NM_181747) TTS (NM_181747) 40400 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 165.25-24 chr2 58789595 58789791 + 1.25 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 268940 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 264-19 chr3 94050676 94050951 + 1.25 NA intron (NR_135621, intron 7 of 8) intron (NR_135621, intron 7 of 8) 12103 NM_176815 200895 Hs.718516 NM_176815 ENSG00000178700 DHFR2 DHFRL1|DHFRP4 dihydrofolate reductase 2 protein-coding 169.75 chr1 45630853 45631193 + 1.25 NA intron (NM_021639, intron 10 of 12) L1MC|LINE|L1 -6969 NM_001190182 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 177.25-55 chr9 87763074 87763334 + 1.25 NA Intergenic Intergenic -9711 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 168.5-12 chr11 5386027 5386243 + 1.25 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -3242 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 187-17 chr18 63625991 63626455 + 1.25 NA Intergenic Intergenic 18033 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 123.25-63 chr5 28209684 28209850 + 1.25 NA Intergenic LTR105_Mam|LTR|ERVL 77898 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 156.25-25 chr16 83606118 83606292 + 1.25 NA intron (NM_001220489, intron 7 of 12) intron (NM_001220489, intron 7 of 12) 97859 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 245.75-2 chr10 22101531 22101851 + 1.25 NA Intergenic Intergenic -97961 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 114.25-93 chr6 162726625 162726762 + 1.25 NA promoter-TSS (NM_152410) promoter-TSS (NM_152410) -439 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 134-30 chr17 71578769 71578924 + 1.25 NA Intergenic Intergenic -376667 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 154-13 chr12 6351083 6351255 + 1.25 NA intron (NM_001038, intron 8 of 12) L1MB8|LINE|L1 -9052 NM_001065 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 116.25-67 chr4 90332870 90333036 + 1.25 NA intron (NM_207491, intron 3 of 7) L1MC4|LINE|L1 97922 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 123.5-115 chr9 83006162 83006289 + 1.25 NA intron (NM_152573, intron 7 of 16) L2b|LINE|L2 56917 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 123-56 chr6 123923894 123924041 + 1.25 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 120102 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 138-59 chr5 82734628 82734783 + 1.25 NA Intergenic Intergenic -105450 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 127.75-20 chr12 12467010 12467188 + 1.25 NA 3' UTR (NM_001330356, exon 3 of 3) 3' UTR (NM_001330356, exon 3 of 3) 95764 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 134.75-48 chr3 38840653 38840871 + 1.25 NA Intergenic L1ME1|LINE|L1 -46752 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 155.25-36 chr2 162753949 162754182 + 1.25 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -14871 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 183.75-36 chr3 1886162 1886450 + 1.25 NA Intergenic MLT2D|LTR|ERVL -212497 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 247 chr1 246007380 246007700 + 1.25 NA intron (NM_022743, intron 5 of 11) AluJb|SINE|Alu 409872 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 180-47 chr3 186137661 186137885 + 1.25 NA Intergenic Intergenic -28684 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 231.5-5 chr10 103127262 103127594 + 1.25 NA intron (NM_001351176, intron 2 of 17) intron (NM_001351176, intron 2 of 17) 26393 NM_001351174 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 157-7 chr10 65651397 65651643 + 1.25 NA intron (NR_120647, intron 3 of 5) L1MA5A|LINE|L1 80095 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 312.5-9 chr22 19902956 19903406 + 1.25 NA intron (NR_147957, intron 7 of 16) intron (NR_147957, intron 7 of 16) 29372 NM_001352301 10587 Hs.443430 NM_006440 ENSG00000184470 TXNRD2 GCCD5|SELZ|TR|TR-BETA|TR3|TRXR2 thioredoxin reductase 2 protein-coding 172.5-72 chr6 100678394 100678647 + 1.25 NA intron (NM_006828, intron 14 of 41) (AATATAA)n|Simple_repeat|Simple_repeat 202809 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 232.75-5 chr12 46328845 46329092 + 1.25 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 43805 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 394-3 chr12 23929681 23930224 + 1.25 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 19718 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 165.75-59 chr5 166527852 166528120 + 1.25 NA Intergenic Intergenic 398384 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 223.5-44 chr20 37384889 37385211 + 1.25 NA intron (NM_198291, intron 4 of 13) intron (NM_198291, intron 4 of 13) 38922 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 113-35 chr17 70118719 70118850 + 1.25 NA intron (NM_001291622, intron 4 of 5) MSTA|LTR|ERVL-MaLR 13939 NM_001291623 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 152.75-45 chr3 90341930 90342263 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 1234475 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 177.25-35 chr4 87926134 87926409 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL -49379 NM_001040060 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 164.25-61 chr8 138695224 138695409 + 1.25 NA intron (NM_152888, intron 32 of 64) intron (NM_152888, intron 32 of 64) -197586 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 247.25-20 chr3 63624719 63625081 + 1.25 NA Intergenic Intergenic -27775 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 314-19 chr8 133968194 133968702 + 1.25 NA Intergenic Intergenic 81952 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 184.5-47 chr20 19085959 19086145 + 1.25 NA Intergenic Intergenic -126590 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 187.25-2 chr1 89101992 89102384 + 1.25 NA Intergenic Intergenic 23926 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 252.25-12 chr19 38439075 38439364 + 1.25 NA intron (NM_001042723, intron 1 of 104) AluSp|SINE|Alu 5519 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 160.5-5 chr10 62362529 62362711 + 1.25 NA intron (NR_104162, intron 1 of 3) L1ME3A|LINE|L1 -11537 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 243.25-20 chr9 27936286 27936515 + 1.25 NA Intergenic Intergenic -362534 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 145.5-43 chr19 58279569 58279703 + 1.25 NA non-coding (NR_144447, exon 1 of 7) non-coding (NR_144447, exon 1 of 7) 670 NR_144447 108903150 Hs.715293 NR_144447 ENSG00000267216 ZNF8-ERVK3-1 - ZNF8-ERVK3-1 readthrough ncRNA 122.75-9 chr10 16572156 16572318 + 1.25 NA Intergenic L1ME4b|LINE|L1 -50358 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 234.5-10 chr11 124626401 124626741 + 1.25 NA exon (NM_032811, exon 4 of 9) exon (NM_032811, exon 4 of 9) 3707 NR_016021 84897 Hs.436410 NM_032811 ENSG00000154144 TBRG1 NIAM|TB-5 transforming growth factor beta regulator 1 protein-coding 196.5-25 chr13 26055678 26055936 + 1.25 NA intron (NR_146971, intron 1 of 1) L1MB5|LINE|L1 3715 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 215-12 chr12 11988997 11989380 + 1.25 NA Intergenic L1MA5A|LINE|L1 -60673 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 199-52 chr8 142528180 142528395 + 1.25 NA intron (NM_001702, intron 24 of 30) intron (NM_001702, intron 24 of 30) 78638 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 215.75-4 chr12 125654630 125654839 + 1.25 NA 3' UTR (NM_001286219, exon 5 of 5) 3' UTR (NM_001286219, exon 5 of 5) 32282 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 146.25-22 chr13 101344783 101345012 + 1.25 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 71611 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 198.5-54 chr8 16235463 16235801 + 1.25 NA Intergenic Intergenic -42841 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 561.25 chr14 56108116 56108644 + 1.25 NA Intergenic L2b|LINE|L2 -10031 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 373.5 chr10 27034498 27034883 + 1.25 NA intron (NM_014915, intron 24 of 33) intron (NM_014915, intron 24 of 33) 65808 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 165.25-48 chr5 83309840 83310072 + 1.25 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -161718 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 362.5-5 chr11 78153745 78154299 + 1.25 NA intron (NR_102281, intron 2 of 2) intron (NR_102281, intron 2 of 2) 14229 NR_102280 100289388 Hs.628183 NM_203432 ENSG00000246174 KCTD21-AS1 - KCTD21 antisense RNA 1 ncRNA 132.75-101 chr8 130181572 130181786 + 1.25 NA intron (NM_001362925, intron 7 of 29) intron (NM_001362925, intron 7 of 29) -96911 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 176.25-57 chr5 131306602 131306763 + 1.25 NA intron (NM_001038702, intron 1 of 4) L1M2|LINE|L1 42673 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 193-25 chr17 4161646 4161806 + 1.25 NA Intergenic Intergenic 18029 NM_001254755 124936 Hs.513871 NM_144611 ENSG00000167740 CYB5D2 - cytochrome b5 domain containing 2 protein-coding 203.75-29 chr22 38641821 38642091 + 1.25 NA intron (NM_001013647, intron 3 of 16) (GT)n|Simple_repeat|Simple_repeat 14436 NM_001013647 646851 Hs.542707 NM_001013647 ENSG00000184949 FAM227A - family with sequence similarity 227 member A protein-coding 169.75-56 chr6 64592110 64592303 + 1.25 NA intron (NM_001292009, intron 25 of 43) intron (NM_001292009, intron 25 of 43) -709212 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 180.25-33 chr20 45228442 45228668 + 1.25 NA Intergenic L1ME2|LINE|L1 7182 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 278.5-6 chr13 104828060 104828331 + 1.25 NA Intergenic Intergenic -637672 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 157.25-15 chr11 102965209 102965359 + 1.25 NA Intergenic MADE1|DNA|TcMar-Mariner -9552 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 294.5-14 chr3 182134135 182134415 + 1.25 NA Intergenic UCON34|Unknown|Unknown 181911 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 207-8 chr11 19545033 19545232 + 1.25 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -21054 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 142.75-49 chr20 54306987 54307166 + 1.25 NA Intergenic MIR|SINE|MIR 98989 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 194.5-72 chr8 56046559 56046918 + 1.25 NA Intergenic AluSz6|SINE|Alu 27163 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 172-41 chr6 71774334 71774575 + 1.25 NA Intergenic Intergenic -112249 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 142-67 chr8 10467435 10467576 + 1.25 NA Intergenic AluJo|SINE|Alu -7060 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 167.25-62 chr5 60981793 60982085 + 1.25 NA intron (NM_174889, intron 1 of 3) L1M1|LINE|L1 36734 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 263.75-7 chr2 216528575 216529017 + 1.25 NA Intergenic Intergenic 29952 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 185.5-68 chr7 12609299 12609490 + 1.25 NA intron (NR_156701, intron 4 of 14) intron (NR_156701, intron 4 of 14) 19871 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 213-12 chr10 51934630 51934978 + 1.25 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -235209 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 227.75-16 chr3 14646102 14646314 + 1.25 NA Intergenic Intergenic -5538 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 151-2 chr1 187796794 187796963 + 1.25 NA Intergenic Intergenic 353250 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 212-11 chr13 93548620 93548859 + 1.25 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 309734 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 152.5-55 chr2 218041189 218041340 + 1.25 NA intron (NR_034176, intron 2 of 13) L1M5|LINE|L1 6330 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 152.75-43 chr3 29471194 29471356 + 1.25 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 189963 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 120.5-82 chr5 16185801 16185937 + 1.25 NA non-coding (NR_149044, exon 2 of 2) non-coding (NR_149044, exon 2 of 2) 5628 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 126.75-64 chr4 36826197 36826327 + 1.25 NA Intergenic L1PB3|LINE|L1 -175517 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 213-47 chr8 80036648 80036837 + 1.25 NA non-coding (NR_105033, exon 9 of 9) non-coding (NR_105033, exon 9 of 9) -6483 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 194.5-27 chr18 58538514 58538925 + 1.25 NA intron (NM_052947, intron 4 of 12) MSTB1|LTR|ERVL-MaLR -61901 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 270.75-22 chr8 111752759 111753133 + 1.25 NA Intergenic Intergenic 376307 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 237.25-5 chr10 54882568 54882944 + 1.25 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -81465 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 214.75-13 chr15 95289110 95289375 + 1.25 NA intron (NR_034095, intron 2 of 3) intron (NR_034095, intron 2 of 3) 37858 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 223.5-29 chr15 63124346 63124631 + 1.25 NA intron (NM_032857, intron 2 of 5) intron (NM_032857, intron 2 of 5) 2627 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 173.75-6 chr1 197303480 197303635 + 1.25 NA intron (NM_001257965, intron 2 of 14) intron (NM_001257965, intron 2 of 14) 35305 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 125-17 chr12 15174570 15174695 + 1.25 NA intron (NM_032918, intron 2 of 4) L1MB8|LINE|L1 22709 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 169.5-17 chr11 122113331 122113528 + 1.25 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) 2786 NM_001001786 414899 Hs.686109 NM_001001786 ENSG00000259571 BLID BRCC2 BH3-like motif containing, cell death inducer protein-coding 223-19 chr18 68819169 68819419 + 1.25 NA intron (NM_024781, intron 1 of 7) L1ME3A|LINE|L1 21214 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 242.25-32 chr9 26469955 26470184 + 1.25 NA Intergenic Intergenic 403394 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 230-12 chr2 42661116 42661314 + 1.25 NA intron (NM_001330444, intron 8 of 15) intron (NM_001330444, intron 8 of 15) 92583 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 148-39 chr20 43856000 43856167 + 1.25 NA Intergenic Intergenic -38635 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 254.5-2 chr1 32571028 32571349 + 1.25 NA intron (NR_111980, intron 2 of 3) LTR82B|LTR|ERVL 31761 NM_001040441 653121 Hs.546479 NM_144621 ENSG00000160062 ZBTB8A BOZF1|ZBTB8|ZNF916A zinc finger and BTB domain containing 8A protein-coding 135.25-81 chr5 140795346 140795596 + 1.25 NA exon (NM_018905, exon 1 of 4) exon (NM_018905, exon 1 of 4) 619 NM_031496 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 159.25-35 chr2 30665259 30665505 + 1.25 NA Intergenic Intergenic 142064 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 221.5-16 chr18 59892209 59892623 + 1.25 NA Intergenic Intergenic -7580 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 190.75-19 chr14 43787116 43787401 + 1.25 NA Intergenic Intergenic 720025 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 180-24 chr15 60714813 60715188 + 1.25 NA intron (NM_134261, intron 1 of 10) MIR3|SINE|MIR 33431 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 136-25 chr18 5217335 5217519 + 1.25 NA Intergenic L2a|LINE|L2 -19675 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 158.25-62 chr8 21201726 21201953 + 1.25 NA Intergenic Intergenic -96400 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 190.5-49 chr3 183294247 183294442 + 1.25 NA intron (NM_015078, intron 13 of 29) intron (NM_015078, intron 13 of 29) 41091 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 238.75-11 chr2 214317953 214318211 + 1.25 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -92972 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 117-67 chr5 7667268 7667439 + 1.25 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 183780 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 224.5-12 chr14 57814637 57814911 + 1.25 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 50225 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 296.25-6 chr2 118078113 118078364 + 1.25 NA Intergenic Intergenic -10180 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 165-57 chrX 71052779 71052965 + 1.25 NA Intergenic Intergenic 15462 NM_013346 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 208-14 chr2 35136111 35136305 + 1.25 NA Intergenic L1ME1|LINE|L1 -335197 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 141.75-75 chr6 69536080 69536318 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie 260267 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 366-6 chr2 30190339 30190782 + 1.25 NA Intergenic AluY|SINE|Alu 3126 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 190.25-3 chr1 55600826 55601060 + 1.25 NA Intergenic L4_A_Mam|LINE|RTE-X 344020 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 184.75-41 chr3 173681536 173681772 + 1.25 NA intron (NM_001365928, intron 3 of 6) MIR|SINE|MIR 97220 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 343.5-6 chr5 90248598 90249169 + 1.25 NA intron (NR_120601, intron 3 of 5) intron (NR_120601, intron 3 of 5) 41188 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 243.5-5 chr14 54510448 54510802 + 1.25 NA intron (NM_006568, intron 1 of 5) MIR3|SINE|MIR 719 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 332.75 chr10 55517682 55518099 + 1.25 NA intron (NM_001354404, intron 2 of 34) MER67A|LTR|ERV1 -81152 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 126.25-3 chr1 69677610 69677775 + 1.25 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 108351 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 241.75-3 chr1 234876577 234876811 + 1.25 NA Intergenic MIRb|SINE|MIR 87305 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 244.25-12 chr17 42565945 42566226 + 1.25 NA promoter-TSS (NM_198205) promoter-TSS (NM_198205) -975 NM_170607 6945 Hs.383019 NM_170607 ENSG00000108788 MLX MAD7|MXD7|TCFL4|TF4|bHLHd13 MAX dimerization protein MLX protein-coding 115.75-60 chr3 74467666 74467820 + 1.25 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 53397 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 270.5-24 chr5 155074062 155074406 + 1.25 NA Intergenic MER39B|LTR|ERV1 60479 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 227-24 chr5 32366401 32366754 + 1.25 NA intron (NM_016107, intron 17 of 19) intron (NM_016107, intron 17 of 19) 27898 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 130.75-75 chr9 77474138 77474292 + 1.25 NA intron (NR_121184, intron 2 of 4) L1MB7|LINE|L1 26566 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 182.75-17 chr19 19574238 19574493 + 1.25 NA intron (NR_038198, intron 2 of 7) intron (NR_038198, intron 2 of 7) 36100 NM_153221 148113 Hs.279574 NM_153221 ENSG00000160161 CILP2 CLIP-2 cartilage intermediate layer protein 2 protein-coding 215-14 chr12 92823064 92823385 + 1.25 NA intron (NM_003566, intron 13 of 28) L2c|LINE|L2 86735 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 180.25-19 chr15 63390264 63390595 + 1.25 NA intron (NR_120375, intron 1 of 6) intron (NR_120375, intron 1 of 6) 199 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 176.75-52 chr8 90723921 90724110 + 1.25 NA Intergenic Intergenic -67760 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 262.5-38 chr8 83779593 83779884 + 1.25 NA Intergenic L1MA9|LINE|L1 375980 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 187.5-63 chr5 172144545 172144814 + 1.25 NA intron (NM_005990, intron 2 of 18) intron (NM_005990, intron 2 of 18) 43545 NM_005990 6793 Hs.744005 NM_005990 ENSG00000072786 STK10 LOK|PRO2729 serine/threonine kinase 10 protein-coding 257.75-3 chr10 120279473 120279774 + 1.25 NA Intergenic L1PA15|LINE|L1 75600 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 252.5-18 chr2 116313755 116314029 + 1.25 NA Intergenic Intergenic 970077 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 170.5-76 chr7 26732901 26733109 + 1.25 NA intron (NM_003930, intron 6 of 12) intron (NM_003930, intron 6 of 12) 95134 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 210.75-19 chr22 35384673 35384864 + 1.25 NA intron (NM_002133, intron 2 of 4) MIR|SINE|MIR 3672 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 347.75-6 chr3 61027204 61027542 + 1.25 NA intron (NR_148922, intron 3 of 3) AluSx1|SINE|Alu 224079 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 212-34 chr4 80809037 80809344 + 1.25 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -221518 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 121.5-79 chr3 24156941 24157106 + 1.25 NA intron (NM_001354708, intron 4 of 9) intron (NM_001354708, intron 4 of 9) 5699 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 171.5-23 chr13 60313346 60313514 + 1.25 NA Intergenic L2c|LINE|L2 -45326 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 145.25-21 chr12 18882604 18882751 + 1.25 NA Intergenic Intergenic 144558 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 313.5-11 chr3 114886155 114886494 + 1.25 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 13291 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 182.5-26 chr2 17001603 17001801 + 1.25 NA Intergenic Intergenic -335868 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 171.5-72 chr5 131525869 131526061 + 1.25 NA intron (NM_016340, intron 6 of 27) MIR|SINE|MIR 109264 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 263.75-10 chr4 98004376 98004611 + 1.25 NA intron (NM_174952, intron 5 of 10) L1MA9|LINE|L1 138983 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 260.75-13 chr21 30114294 30114723 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 52297 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 200.25-4 chr1 171278371 171278646 + 1.25 NA intron (NM_001282694, intron 3 of 7) intron (NM_001282694, intron 3 of 7) 20585 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 248.5-31 chr6 148487678 148487909 + 1.25 NA intron (NM_001346506, intron 9 of 20) intron (NM_001346506, intron 9 of 20) -20706 NM_001346508 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 169.75-17 chr12 68767825 68767980 + 1.25 NA non-coding (NR_149143, exon 5 of 5) non-coding (NR_149143, exon 5 of 5) 21726 NR_149143 55508 Hs.506011 NM_018656 ENSG00000175782 SLC35E3 BLOV1 solute carrier family 35 member E3 protein-coding 177.25-7 chr10 61859248 61859551 + 1.25 NA Intergenic L1PB2|LINE|L1 -42300 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 198.75-15 chr16 64152084 64152364 + 1.25 NA Intergenic Intergenic 969839 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 292.25-4 chr17 70824788 70825135 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie 377218 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 216.25-46 chrX 54230236 54230639 + 1.25 NA intron (NM_020922, intron 21 of 23) L1M5|LINE|L1 -47183 NM_198456 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 292 chr1 10170321 10170805 + 1.25 NA intron (NM_006048, intron 23 of 26) intron (NM_006048, intron 23 of 26) -40007 NM_001365951 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 133.5-15 chr10 100752487 100752599 + 1.25 NA intron (NM_003988, intron 3 of 10) intron (NM_003988, intron 3 of 10) 6832 NM_003987 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 185.5-50 chr3 97535372 97535634 + 1.25 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 95896 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 288.25-13 chr22 28225483 28226043 + 1.25 NA intron (NM_001145418, intron 5 of 22) L1ME1|LINE|L1 -234106 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 176.75-2 chr1 43500190 43500476 + 1.25 NA Intergenic L2a|LINE|L2 -25704 NM_001329137 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 123.75-5 chr1 84507355 84507543 + 1.25 NA promoter-TSS (NM_005274) promoter-TSS (NM_005274) -868 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 187.25-5 chr1 94059321 94059591 + 1.25 NA intron (NM_000350, intron 14 of 49) intron (NM_000350, intron 14 of 49) 61692 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 262.75-8 chr14 25112082 25112492 + 1.25 NA Intergenic L1M5|LINE|L1 -61990 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 167.5-11 chr10 98051258 98051454 + 1.25 NA Intergenic Intergenic -20528 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 130.25-54 chr20 45186819 45186969 + 1.25 NA Intergenic Intergenic 11992 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 139.75-72 chr8 88477118 88477229 + 1.25 NA Intergenic L1PA11|LINE|L1 -149690 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 152.75-27 chr19 31845851 31846037 + 1.25 NA Intergenic Tigger2|DNA|TcMar-Tigger -179918 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 261.5-24 chr5 67302827 67303278 + 1.25 NA Intergenic Intergenic -106253 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 158.25-14 chr12 43364248 43364397 + 1.25 NA intron (NM_025003, intron 37 of 38) L1M4b|LINE|L1 187881 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 272.75-16 chr8 115159291 115159529 + 1.25 NA Intergenic Intergenic 508603 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 245.25-27 chr8 74695517 74695868 + 1.25 NA intron (NR_033830, intron 2 of 5) L1PB1|LINE|L1 -10001 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 144.75-4 chr1 90673407 90673615 + 1.25 NA Intergenic Intergenic 15761 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 115.75-59 chr3 66079705 66079891 + 1.25 NA Intergenic Intergenic -40880 NM_015520 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 380.5 chr11 6983348 6983925 + 1.25 NA intron (NR_149005, intron 6 of 6) intron (NR_149005, intron 6 of 6) 36710 NR_148988 7761 Hs.445849 NM_013249 ENSG00000149050 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 207.25-11 chr18 13974700 13974954 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR -59120 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 172-14 chr14 68082482 68082691 + 1.25 NA intron (NM_133509, intron 7 of 10) L1ME4b|LINE|L1 258994 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 186.75-54 chr6 38536153 38536317 + 1.25 NA intron (NM_001172418, intron 5 of 10) L1MA3|LINE|L1 54639 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 293.25-4 chr12 68638296 68638627 + 1.25 NA intron (NM_015646, intron 1 of 7) intron (NM_015646, intron 1 of 7) -11086 NR_033335 100379132 Hs.724530 NR_033335 ENSG00000206650 SNORA70G U70G small nucleolar RNA, H/ACA box 70G snoRNA 134.25-97 chr8 137255795 137256058 + 1.25 NA Intergenic MLT1B|LTR|ERVL-MaLR 157662 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 256.75-13 chr8 76054249 76054671 + 1.25 NA Intergenic LTR16E2|LTR|ERVL -352194 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 126.5-9 chr1 189276887 189277106 + 1.25 NA Intergenic Intergenic 1199014 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 129.75-6 chr1 217410278 217410528 + 1.25 NA Intergenic Intergenic 220687 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 140.25-73 chr5 157833477 157833661 + 1.25 NA intron (NM_001195556, intron 1 of 11) L2c|LINE|L2 25576 NM_001195556 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 132.5-66 chr21 16156742 16156991 + 1.25 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) -24532 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 332.75-7 chr4 70666976 70667467 + 1.25 NA promoter-TSS (NM_144646) promoter-TSS (NM_144646) -713 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 179-2 chr1 239880103 239880434 + 1.25 NA intron (NM_001347716, intron 7 of 7) LTR31|LTR|ERV1 19604 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 264-27 chr8 64528314 64528686 + 1.25 NA Intergenic L1PB4|LINE|L1 48763 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 251.5-4 chr11 44542591 44542916 + 1.25 NA Intergenic (CTCCAT)n|Simple_repeat|Simple_repeat -22910 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 328.5-20 chrX 14125053 14125488 + 1.25 NA Intergenic Intergenic -95378 NM_001042480 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 152.25-31 chr2 100245434 100245611 + 1.25 NA intron (NR_103730, intron 1 of 2) L2b|LINE|L2 37268 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 198-44 chr6 53645887 53646064 + 1.25 NA Intergenic Intergenic 17595 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 273.25-11 chr3 15572067 15572464 + 1.25 NA intron (NM_001284413, intron 10 of 15) intron (NM_001284413, intron 10 of 15) -29087 NM_001281723 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 197.75-33 chr4 28283232 28283473 + 1.25 NA Intergenic L1PB1|LINE|L1 -536230 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 113.75 chr1 31432542 31432723 + 1.25 NA intron (NM_178865, intron 8 of 9) MIRb|SINE|MIR 18819 NM_018565 347735 Hs.270655 NM_018565 ENSG00000168528 SERINC2 FKSG84|PRO0899|TDE2|TDE2L serine incorporator 2 protein-coding 148.75-56 chr5 176700241 176700461 + 1.25 NA Intergenic Intergenic -42854 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 126.5-99 chr6 10935190 10935315 + 1.25 NA intron (NM_001040274, intron 21 of 29) intron (NM_001040274, intron 21 of 29) 18837 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 260.75-2 chr1 224661617 224661899 + 1.25 NA intron (NM_152495, intron 1 of 5) intron (NM_152495, intron 1 of 5) 45441 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 204.25-11 chr11 78190350 78190568 + 1.25 NA intron (NM_020798, intron 1 of 10) intron (NM_020798, intron 1 of 10) 1540 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 117.5-97 chr9 9508985 9509101 + 1.25 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -290349 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 182.75-49 chr6 82578289 82578475 + 1.25 NA Intergenic L1MC3|LINE|L1 214138 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 228.25-41 chr8 144474964 144475289 + 1.25 NA TTS (NM_145754) TTS (NM_145754) 723 NM_003923 8928 Hs.708365 NM_003923 ENSG00000160973 FOXH1 FAST-1|FAST1 forkhead box H1 protein-coding 167.5-78 chr7 41719877 41720112 + 1.25 NA intron (NR_027118, intron 2 of 3) L1M5|LINE|L1 -16904 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 239.25-28 chr7 115287401 115287615 + 1.25 NA Intergenic Intergenic -56153 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 245.5-28 chr4 90579116 90579384 + 1.25 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 344219 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 122.75-69 chr6 14620964 14621190 + 1.25 NA Intergenic Intergenic -335623 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 159.5-21 chr12 128877592 128877802 + 1.25 NA intron (NM_144669, intron 2 of 7) L1ME4b|LINE|L1 24219 NM_001366887 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 187.25-33 chr20 19604329 19604597 + 1.25 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -282058 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 205.75-7 chr11 126646139 126646422 + 1.25 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -6498 NR_120532 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 125-89 chr7 54916903 54917052 + 1.25 NA Intergenic Intergenic -102040 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 121.5-57 chr2 13523609 13523779 + 1.25 NA Intergenic LTR23|LTR|ERV1 -516681 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 147.75-53 chr3 194726533 194726684 + 1.25 NA intron (NR_037891, intron 1 of 3) L1ME3A|LINE|L1 18187 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 120.25-23 chr13 43878312 43878502 + 1.25 NA promoter-TSS (NM_001128303) promoter-TSS (NM_001128303) -771 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 153-21 chr2 144376211 144376479 + 1.25 NA Intergenic Intergenic -43276 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 161.25-75 chr6 167255115 167255370 + 1.25 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 26942 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 197-40 chr4 99215365 99215666 + 1.25 NA intron (NM_001102470, intron 2 of 8) MER5B|DNA|hAT-Charlie 3731 NR_132990 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 157.75-58 chr4 55213851 55214092 + 1.25 NA Intergenic Intergenic -88376 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 200.75-9 chr12 70126983 70127229 + 1.25 NA Intergenic Intergenic -115924 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 205.25-17 chr2 102586560 102586881 + 1.25 NA Intergenic Intergenic -32833 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 143.5-21 chr12 26371562 26371740 + 1.25 NA intron (NM_002223, intron 55 of 56) L2a|LINE|L2 176078 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 169.25-19 chr14 85979693 85979837 + 1.25 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 45087 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 147.25-60 chr6 112164490 112164843 + 1.25 NA intron (NM_001105206, intron 13 of 38) intron (NM_001105206, intron 13 of 38) -71930 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 249.75-12 chr2 50275318 50275542 + 1.25 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 72324 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 193-24 chr16 4912525 4912768 + 1.25 NA intron (NM_002705, intron 1 of 21) intron (NM_002705, intron 1 of 21) 24502 NM_002705 5493 Hs.192233 NM_002705 ENSG00000118898 PPL - periplakin protein-coding 147.25-61 chr6 118957669 118957813 + 1.25 NA Intergenic Intergenic -22579 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 198.75-38 chr5 77391087 77391364 + 1.25 NA intron (NM_001029854, intron 9 of 20) intron (NM_001029854, intron 9 of 20) 101091 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 171.75-26 chr2 15169451 15169684 + 1.25 NA intron (NR_052013, intron 50 of 50) intron (NR_052013, intron 50 of 50) 391767 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 409.5-3 chr2 17868182 17868544 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -9484 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 216.5-22 chr3 118777575 118777804 + 1.25 NA intron (NR_135547, intron 1 of 3) L1PA15|LINE|L1 33144 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 229.75-27 chr6 65680572 65680881 + 1.25 NA intron (NM_001292009, intron 1 of 43) MER21B|LTR|ERVL 26499 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 226.75-3 chr1 179561378 179561618 + 1.25 NA intron (NM_001297575, intron 2 of 6) intron (NM_001297575, intron 2 of 6) 14450 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 145.25-25 chr14 54929637 54929765 + 1.25 NA Intergenic Intergenic -26875 NM_001024071 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 159.25-5 chr10 55166274 55166609 + 1.25 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -365150 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 246.25-13 chr2 60387829 60388139 + 1.25 NA promoter-TSS (NR_039631) promoter-TSS (NR_039631) -539 NR_039631 100616473 NR_039631 ENSG00000266078 MIR4432 - microRNA 4432 ncRNA 127.5-25 chr12 32541936 32542059 + 1.25 NA intron (NM_001304480, intron 1 of 16) intron (NM_001304480, intron 1 of 16) 7704 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 249.75-16 chr2 215668601 215668879 + 1.25 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -49303 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 170.5-39 chr2 6724531 6724809 + 1.25 NA Intergenic Intergenic 45641 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 226.25-32 chr8 87101294 87101698 + 1.25 NA intron (NM_173538, intron 4 of 10) L1MEb|LINE|L1 235081 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 242.75-16 chr6 53124304 53124552 + 1.25 NA Intergenic L1ME1|LINE|L1 24413 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 166.5-11 chr1 219818397 219818578 + 1.25 NA Intergenic MIRb|SINE|MIR 110164 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 129.5-8 chr1 239893800 239893945 + 1.25 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 6000 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 144-69 chr7 19385990 19386185 + 1.25 NA Intergenic L1PA5|LINE|L1 -240666 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 193-26 chr17 32202897 32203209 + 1.25 NA intron (NM_001033566, intron 15 of 19) intron (NM_001033566, intron 15 of 19) -51482 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 209-8 chr12 59508456 59508799 + 1.25 NA Intergenic AluJr|SINE|Alu -87402 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 125.75-10 chr10 65652237 65652427 + 1.25 NA intron (NR_120647, intron 3 of 5) MER72|LTR|ERV1 80907 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 228-14 chr15 37393929 37394144 + 1.25 NA Intergenic L1MC4a|LINE|L1 -292725 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 343-9 chr5 28044816 28045278 + 1.25 NA Intergenic L1MA5|LINE|L1 242618 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 352.5-10 chr6 36164034 36164610 + 1.25 NA Intergenic L1MB5|LINE|L1 -32422 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 316-3 chr10 82341118 82341450 + 1.25 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -108364 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 307.75-10 chr8 85842426 85842902 + 1.25 NA Intergenic Intergenic -14722 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 150.75-10 chr12 59788260 59788463 + 1.25 NA non-coding (NR_073056, exon 7 of 7) non-coding (NR_073056, exon 7 of 7) 98991 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 183.25-9 chr12 33239428 33239595 + 1.25 NA Intergenic Intergenic 200308 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 388-6 chr6 158186014 158186485 + 1.25 NA intron (NM_207118, intron 2 of 2) intron (NM_207118, intron 2 of 2) 17902 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 250.5-10 chr11 105270140 105270515 + 1.25 NA Intergenic L1MC1|LINE|L1 -130558 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 233.75-31 chr7 28833784 28834267 + 1.25 NA Intergenic Intergenic 124305 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 240-24 chr7 43911586 43911945 + 1.25 NA intron (NM_001290076, intron 1 of 6) L1M4|LINE|L1 -4696 NM_017920 55665 Hs.663312 NM_017920 ENSG00000106608 URGCP URG4 upregulator of cell proliferation protein-coding 203.5-7 chr10 114976093 114976506 + 1.25 NA 3' UTR (NM_139169, exon 8 of 8) 3' UTR (NM_139169, exon 8 of 8) -18358 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 204.25-41 chr4 98333866 98334210 + 1.25 NA intron (NM_021159, intron 2 of 14) MER101-int|LTR|ERV1 72654 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 232.25-18 chr2 203810225 203810487 + 1.25 NA Intergenic LTR16C|LTR|ERVL -57415 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 171-19 chr14 28876606 28876827 + 1.25 NA Intergenic Intergenic -90929 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 186-40 chr5 39060033 39060350 + 1.25 NA intron (NM_001285439, intron 2 of 38) Tigger15a|DNA|TcMar-Tigger 14208 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 190.25-53 chrX 17002145 17002316 + 1.25 NA intron (NM_001080975, intron 1 of 17) (GGGA)n|Simple_repeat|Simple_repeat 55572 NM_004726 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 179.5-66 chr3 163280820 163281017 + 1.25 NA intron (NR_033945, intron 1 of 6) intron (NR_033945, intron 1 of 6) 22383 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 144.25-27 chr16 66773755 66773870 + 1.25 NA intron (NM_001136505, intron 12 of 18) L2b|LINE|L2 -21984 NM_001323955 1783 Hs.369068 NM_006141 ENSG00000135720 DYNC1LI2 DNCLI2|LIC2 dynein cytoplasmic 1 light intermediate chain 2 protein-coding 127.75-29 chr14 49876372 49876514 + 1.25 NA Intergenic L1MDa|LINE|L1 -13594 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 146-26 chr2 62589615 62589953 + 1.25 NA Intergenic Intergenic -83589 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 195.5-58 chr3 60247942 60248203 + 1.25 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -167163 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 211.25-26 chr3 74624722 74625044 + 1.25 NA Intergenic MER45B|DNA|hAT-Tip100 -103743 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 166.75-44 chr3 169988875 169989021 + 1.25 NA intron (NM_003262, intron 7 of 7) intron (NM_003262, intron 7 of 7) 22141 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 211.75-13 chr12 32850586 32850890 + 1.25 NA intron (NM_004572, intron 5 of 13) intron (NM_004572, intron 5 of 13) 46108 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 340.75-7 chr3 5396386 5396808 + 1.25 NA Intergenic Intergenic -146342 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 226.75-8 chr14 38167017 38167237 + 1.25 NA Intergenic Intergenic -40777 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 165.5-93 chr9 93768610 93768793 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger -50656 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 130.25-14 chr10 83291973 83292121 + 1.25 NA Intergenic L1MB8|LINE|L1 385042 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 165-54 chr8 124700510 124700757 + 1.25 NA intron (NM_001282971, intron 2 of 14) intron (NM_001282971, intron 2 of 14) 27840 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 253.75-3 chr10 86216009 86216358 + 1.25 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 48605 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 124.25-89 chrX 26425500 26425650 + 1.25 NA Intergenic Intergenic -132762 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 279.25-17 chr3 7603055 7603419 + 1.25 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -67953 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 119.5-67 chr20 2510132 2510327 + 1.25 NA intron (NM_001282495, intron 1 of 6) MER67C|LTR|ERV1 -1097 NM_001282498 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 151.5-87 chr8 134237400 134237643 + 1.25 NA Intergenic L1MD2|LINE|L1 351025 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 230.5-21 chr16 62418616 62418901 + 1.25 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -382320 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 131.5-77 chr5 109647400 109647569 + 1.25 NA Intergenic Intergenic -41882 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 120.5-75 chr4 61479164 61479385 + 1.25 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 277102 NM_001371342 127-26 chr13 21425831 21425976 + 1.25 NA intron (NR_104486, intron 1 of 14) intron (NR_104486, intron 1 of 14) 33400 NR_104487 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 183.75-21 chr15 38905565 38905806 + 1.25 NA Intergenic L2|LINE|L2 209087 NR_160786 272.75-17 chr8 130110838 130111146 + 1.25 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -26224 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 132-76 chr8 88702141 88702291 + 1.25 NA Intergenic Intergenic -374733 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 283-15 chr7 19863774 19864103 + 1.25 NA Intergenic Intergenic -90321 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 157.25-64 chr8 115524759 115524966 + 1.25 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 143151 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 251-8 chr11 110667641 110667921 + 1.25 NA intron (NM_020809, intron 3 of 15) Tigger1|DNA|TcMar-Tigger 44044 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 159.5-30 chr16 69573633 69573786 + 1.25 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 7743 NM_001113178 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 233.25-3 chr10 109584345 109584663 + 1.25 NA Intergenic L1ME1|LINE|L1 338742 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 193.75-19 chr19 16298227 16298507 + 1.25 NA Intergenic AluSp|SINE|Alu -26459 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 184.25-13 chr16 69672154 69672346 + 1.25 NA intron (NM_173215, intron 9 of 13) intron (NM_173215, intron 9 of 13) 36425 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 240-14 chr18 1752770 1753299 + 1.25 NA Intergenic L1MA9|LINE|L1 -393405 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 374-3 chr2 72655540 72655866 + 1.25 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 170330 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 183.75-30 chr2 115436823 115437004 + 1.25 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 93098 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 183.5-61 chr5 25584789 25585061 + 1.25 NA Intergenic L1PB2|LINE|L1 393972 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 130-85 chr9 108647641 108647850 + 1.25 NA Intergenic Intergenic 208241 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 203-10 chr14 29009677 29009923 + 1.25 NA Intergenic Intergenic -224013 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 278.5-23 chr5 14542778 14543218 + 1.25 NA Intergenic L1M2|LINE|L1 -38794 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 251-10 chr12 46756686 46757025 + 1.25 NA Intergenic MER44A|DNA|TcMar-Tigger 69142 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 208.5-31 chr18 2071839 2072205 + 1.25 NA Intergenic Intergenic 499483 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 140.25-17 chr12 85672889 85673041 + 1.25 NA Intergenic Intergenic 163444 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 201-48 chr7 18447569 18447810 + 1.25 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -48021 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 165.5-94 chr9 117702679 117702896 + 1.25 NA Intergenic Intergenic -1616 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 123.25-75 chr7 81456578 81456800 + 1.25 NA Intergenic AluSz|SINE|Alu 105130 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 235.25-17 chr3 125224683 125224919 + 1.25 NA TTS (NM_021964) TTS (NM_021964) -12036 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 231.5-20 chr2 31167636 31167965 + 1.25 NA Intergenic MIRc|SINE|MIR -29360 NM_001329095 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 197.5-28 chr17 64619420 64619674 + 1.25 NA intron (NM_022739, intron 1 of 18) MLT1A0|LTR|ERVL-MaLR 42760 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 299-18 chr8 105384481 105384922 + 1.25 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 65158 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 228.25-26 chr3 66048003 66048353 + 1.25 NA Intergenic Intergenic -9260 NM_015520 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 187.25-66 chr8 134826534 134826708 + 1.25 NA Intergenic Intergenic -11448 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 219-6 chr14 21963914 21964163 + 1.25 NA Intergenic Intergenic -293021 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 180.5-73 chr5 117734890 117735122 + 1.25 NA intron (NR_104997, intron 1 of 2) Tigger2b_Pri|DNA|TcMar-Tigger 4645 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 175.25-21 chr15 43029996 43030159 + 1.25 NA intron (NM_174916, intron 20 of 46) intron (NM_174916, intron 20 of 46) 75961 NM_174916 197131 Hs.591121 NM_174916 ENSG00000159459 UBR1 JBS ubiquitin protein ligase E3 component n-recognin 1 protein-coding 115.5-4 chr1 75027980 75028132 + 1.25 NA Intergenic L1MB7|LINE|L1 -100378 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 263 chr1 168498739 168499138 + 1.25 NA Intergenic MIR3|SINE|MIR -3294 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 151.75-57 chr4 23525036 23525270 + 1.25 NA Intergenic L1PA14|LINE|L1 356139 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 169.75-59 chr7 5631665 5631964 + 1.25 NA intron (NM_207111, intron 15 of 16) intron (NM_207111, intron 15 of 16) 38998 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 169.75-53 chr5 125715747 125715964 + 1.25 NA Intergenic Intergenic 222594 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 186-55 chr8 123757642 123757965 + 1.25 NA Intergenic Intergenic -10636 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 176.5-33 chr16 6285574 6285822 + 1.25 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 265995 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 134.75-9 chr10 69589706 69589925 + 1.25 NA Intergenic Intergenic -16393 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 222.25-8 chr12 75629090 75629326 + 1.25 NA Intergenic L2a|LINE|L2 -117599 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 176.25-71 chr8 121326693 121326878 + 1.25 NA Intergenic Intergenic -312561 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 190.25-6 chr1 195418910 195419086 + 1.25 NA Intergenic L1P5|LINE|L1 669717 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 218.5-18 chr17 60425142 60425385 + 1.25 NA intron (NM_181707, intron 1 of 5) AluJo|SINE|Alu 2774 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 214.25-38 chr5 145647892 145648148 + 1.25 NA Intergenic Intergenic 187322 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 167.5-5 chr10 44788884 44789051 + 1.25 NA Intergenic Intergenic -122349 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 131.25-36 chr17 59709595 59709770 + 1.25 NA intron (NM_001329394, intron 1 of 11) intron (NM_001329394, intron 1 of 11) 2028 NM_030938 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 239.25-13 chr16 46687025 46687330 + 1.25 NA intron (NM_018206, intron 1 of 16) intron (NM_018206, intron 1 of 16) 2001 NM_018206 55737 Hs.454528 NM_018206 ENSG00000069329 VPS35 MEM3|PARK17 VPS35 retromer complex component protein-coding 139.75-37 chr18 28365858 28366096 + 1.25 NA Intergenic Intergenic -188847 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 125-4 chr1 70692341 70692474 + 1.25 NA Intergenic L1MEd|LINE|L1 -14046 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 226-27 chr7 23456607 23456842 + 1.25 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 13767 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 227-2 chr1 96448956 96449173 + 1.25 NA Intergenic L1ME3|LINE|L1 -74939 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 178.25-63 chr8 105435611 105435812 + 1.25 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 116168 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 141.75-44 chr2 137136848 137137021 + 1.25 NA intron (NM_001316349, intron 5 of 27) intron (NM_001316349, intron 5 of 27) 371389 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 184.5-17 chr11 111255424 111255584 + 1.25 NA intron (NM_198498, intron 1 of 4) intron (NM_198498, intron 1 of 4) 9779 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 132.25-53 chr20 48197945 48198126 + 1.25 NA Intergenic MIR1_Amn|SINE|MIR -161876 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 206.75-4 chr10 98523979 98524180 + 1.25 NA intron (NM_021828, intron 9 of 11) MER45B|DNA|hAT-Tip100 -77116 NM_001322491 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 171.5-82 chr6 134616118 134616285 + 1.25 NA Intergenic Intergenic -76196 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 246.25-25 chr6 46917119 46917491 + 1.25 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 4633 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 155.75-6 chr10 35062288 35062448 + 1.25 NA intron (NM_003591, intron 3 of 20) intron (NM_003591, intron 3 of 20) 11915 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 287.75-13 chr8 127443553 127444143 + 1.25 NA intron (NR_024393, intron 4 of 4) MLT1I|LTR|ERVL-MaLR 28023 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 237.5-37 chr7 22240911 22241190 + 1.25 NA intron (NM_012294, intron 7 of 25) MIRb|SINE|MIR -46240 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 115.25-65 chr3 143965313 143965426 + 1.25 NA Intergenic Intergenic -6429 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 124.75-50 chr2 219824180 219824397 + 1.25 NA Intergenic Intergenic 80601 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 224-3 chr10 84001992 84002313 + 1.25 NA Intergenic MLT1H1|LTR|ERVL-MaLR -137357 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 258.5-9 chr18 8391500 8391776 + 1.25 NA intron (NM_002845, intron 29 of 30) L1ME3|LINE|L1 -24604 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 324.5-4 chr11 98495900 98496183 + 1.25 NA Intergenic Intergenic -524908 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 142.75-96 chrX 88933745 88933907 + 1.25 NA Intergenic L1PA15|LINE|L1 186601 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 162.75-60 chr5 109384090 109384343 + 1.25 NA intron (NM_014819, intron 1 of 9) intron (NM_014819, intron 1 of 9) 25758 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 115.5-34 chr17 28651343 28651560 + 1.25 NA intron (NM_006923, intron 2 of 2) intron (NM_006923, intron 2 of 2) -6292 NM_001363827 9703 Hs.151761 NM_014680 ENSG00000007202 KIAA0100 BCOX|BCOX1|CT101|FMP27 KIAA0100 protein-coding 162.25-45 chr8 13853868 13853997 + 1.25 NA Intergenic Intergenic 224242 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 258-6 chr1 202874235 202874525 + 1.25 NA non-coding (NR_002929, exon 3 of 3) non-coding (NR_002929, exon 3 of 3) 12626 NR_002929 148709 Hs.162880 NR_002929 ENSG00000234996 LOC148709 - actin gamma 1 pseudogene pseudo 198.75-29 chr3 158617081 158617264 + 1.25 NA Intergenic L1M2|LINE|L1 -27356 NM_001308166 85476 Hs.518355 NM_024996 ENSG00000168827 GFM1 COXPD1|EFG|EFG1|EFGM|EGF1|GFM|hEFG1|mtEF-G1 G elongation factor mitochondrial 1 protein-coding 257-19 chr6 67026962 67027245 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -1028248 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 275.5-26 chr6 27980526 27980891 + 1.25 NA Intergenic Intergenic 23467 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 241-23 chr22 22008898 22009239 + 1.25 NA intron (NR_135291, intron 4 of 6) intron (NR_135291, intron 4 of 6) -26281 NM_001282112 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 236.25-24 chr3 69020594 69020916 + 1.25 NA 3' UTR (NM_001363879, exon 17 of 17) 3' UTR (NM_001363879, exon 17 of 17) -7071 NM_001278689 285203 Hs.518059 NM_173654 ENSG00000163378 EOGT AER61|AOS4|C3orf64|EOGT1 EGF domain specific O-linked N-acetylglucosamine transferase protein-coding 204-43 chr9 73159907 73160185 + 1.25 NA intron (NM_000700, intron 4 of 12) intron (NM_000700, intron 4 of 12) 8181 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 191.75-25 chr2 218801169 218801339 + 1.25 NA intron (NM_000784, intron 1 of 8) AluSx|SINE|Alu 19107 NM_000784 1593 Hs.516700 NM_000784 ENSG00000135929 CYP27A1 CP27|CTX|CYP27 cytochrome P450 family 27 subfamily A member 1 protein-coding 260-35 chr8 128435725 128435988 + 1.25 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 128823 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 165.75-39 chr21 15587812 15587987 + 1.25 NA Intergenic MER39|LTR|ERV1 -142035 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 203.25-43 chr5 121342198 121342633 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR 19865 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 236.25-31 chr4 171979597 171979924 + 1.25 NA intron (NM_001034845, intron 2 of 12) L1MEi|LINE|L1 -166153 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 129.75-39 chr2 95303646 95303866 + 1.25 NA intron (NM_013434, intron 1 of 8) intron (NM_013434, intron 1 of 8) 6409 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 174-55 chr9 77100810 77100997 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -76542 NM_015186 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 142.5-7 chr1 227330006 227330199 + 1.25 NA Intergenic Intergenic -11610 NM_014826 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 327.75-10 chr8 102731645 102731959 + 1.25 NA Intergenic Intergenic -75020 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 281.5-22 chr9 102370872 102371139 + 1.25 NA Intergenic L1MDa|LINE|L1 -148632 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 181.5-57 chr5 149691649 149691828 + 1.25 NA Intergenic L1M5|LINE|L1 -38572 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 262.5-11 chr15 96187362 96187767 + 1.25 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -59723 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 297.75-14 chr4 179101029 179101352 + 1.25 NA Intergenic LTR49|LTR|ERV1 -1193254 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 239.75-7 chr11 86132770 86132996 + 1.25 NA Intergenic Intergenic -63023 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 138.25-70 chr5 27371499 27371660 + 1.25 NA Intergenic Intergenic -100713 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 211.5-3 chr10 80483063 80483362 + 1.25 NA intron (NM_001351270, intron 2 of 9) intron (NM_001351270, intron 2 of 9) 14949 NM_001351272 81619 Hs.308615 NM_030927 ENSG00000108219 TSPAN14 DC-TM4F2|TM4SF14|tspan-14 tetraspanin 14 protein-coding 273.75-4 chr1 221936184 221936471 + 1.25 NA intron (NR_149057, intron 1 of 3) L2a|LINE|L2 -30083 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 156.75-74 chr5 25391123 25391331 + 1.25 NA Intergenic Intergenic 200274 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 321-5 chr2 107787466 107787882 + 1.25 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 33562 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 200.75-29 chr4 182323679 182323914 + 1.25 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 80394 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 229-31 chr6 161698176 161698462 + 1.25 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 227342 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 215-16 chr13 76642322 76642581 + 1.25 NA Intergenic Intergenic 243954 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 129.75-40 chr2 101062128 101062260 + 1.25 NA intron (NM_001102426, intron 2 of 19) intron (NM_001102426, intron 2 of 19) 59905 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 219-14 chr2 58299976 58300233 + 1.25 NA Intergenic L3|LINE|CR1 24227 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 166-38 chr3 3930058 3930315 + 1.25 NA Intergenic MER5A|DNA|hAT-Charlie -129311 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 149.75-72 chr8 135440131 135440300 + 1.25 NA Intergenic Intergenic -17241 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 181-4 chr1 196409691 196409934 + 1.25 NA intron (NM_001287820, intron 12 of 26) L1MB1|LINE|L1 172669 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 156.5-71 chr6 157208891 157209104 + 1.25 NA 3' UTR (NM_001346813, exon 20 of 20) 3' UTR (NM_001346813, exon 20 of 20) 115262 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 170.75-8 chr1 164183756 164183913 + 1.25 NA Intergenic L1ME3|LINE|L1 -375526 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 125.75-9 chr10 27119253 27119364 + 1.25 NA exon (NM_014263, exon 14 of 19) exon (NM_014263, exon 14 of 19) -18810 NM_014915 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 237.75-40 chr6 65706572 65706835 + 1.25 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 522 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 162 chr1 51825238 51825461 + 1.25 NA exon (NM_001242361, exon 8 of 33) exon (NM_001242361, exon 8 of 33) 11053 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 219-5 chr11 14441847 14442287 + 1.25 NA Intergenic L2|LINE|L2 57791 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 147-75 chr7 91238311 91238538 + 1.25 NA Intergenic Intergenic -26009 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 211.75-28 chr4 37049825 37050085 + 1.25 NA Intergenic MLT2B1|LTR|ERVL 48176 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 171.25-50 chr7 20757689 20757864 + 1.25 NA TTS (NM_001163941) TTS (NM_001163941) 29110 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 171.5-2 chr1 45131896 45132122 + 1.25 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 74596 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 183.5-31 chr17 60964151 60964349 + 1.25 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 286399 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 133.25-55 chr3 79329946 79330159 + 1.25 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -81675 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 193.25-38 chr5 174378350 174378512 + 1.25 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 42077 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 216.75-35 chr5 16467328 16467644 + 1.25 NA Intergenic MLT1F|LTR|ERVL-MaLR -1686 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 141-51 chr22 28311263 28311409 + 1.25 NA intron (NM_001145418, intron 2 of 22) Tigger8|DNA|TcMar-Tigger -148533 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 213.25-21 chr2 146080792 146081093 + 1.25 NA Intergenic Intergenic -506115 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 287.25-3 chr10 64502790 64503325 + 1.25 NA Intergenic Intergenic -322471 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 174.75-13 chr12 44207469 44207743 + 1.25 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 371525 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 245.25-5 chr10 44846908 44847144 + 1.25 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -64290 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 229-36 chr9 37429010 37429229 + 1.25 NA intron (NM_012203, intron 5 of 8) intron (NM_012203, intron 5 of 8) 6423 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 179.25-9 chr11 12528675 12528922 + 1.25 NA 3' UTR (NM_018222, exon 13 of 13) 3' UTR (NM_018222, exon 13 of 13) -145623 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 123-45 chr5 24641526 24641727 + 1.25 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 3352 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 201.75-26 chr3 182914424 182914667 + 1.25 NA intron (NM_014616, intron 29 of 29) intron (NM_014616, intron 29 of 29) 65993 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 160.5-51 chr3 101019653 101019895 + 1.25 NA Intergenic Intergenic -26284 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 151-51 chr4 169006749 169007060 + 1.25 NA intron (NM_032783, intron 2 of 4) intron (NM_032783, intron 2 of 4) 3351 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 242.5-32 chr5 120641667 120642034 + 1.25 NA intron (NM_001308088, intron 3 of 3) L2c|LINE|L2 110386 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 166.75-35 chr2 124321391 124321617 + 1.25 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 296217 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 138-17 chr12 56306604 56306792 + 1.25 NA Intergenic AluJo|SINE|Alu -6368 NM_004077 1431 Hs.743252 NM_004077 ENSG00000062485 CS - citrate synthase protein-coding 192.75-50 chr9 36358204 36358450 + 1.25 NA intron (NM_194328, intron 4 of 11) intron (NM_194328, intron 4 of 11) 41942 NM_022781 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 120.75-85 chr6 63884787 63884883 + 1.25 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 77999 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 138-48 chr22 28545802 28546014 + 1.25 NA intron (NM_001145418, intron 2 of 22) L1ME1|LINE|L1 86039 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 129-71 chr7 3623699 3623878 + 1.25 NA intron (NM_152744, intron 2 of 44) intron (NM_152744, intron 2 of 44) 322536 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 265-18 chr2 199912457 199912865 + 1.25 NA intron (NM_153689, intron 1 of 1) AluSz|SINE|Alu 1368 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 182-12 chr14 23370952 23371198 + 1.25 NA Intergenic Intergenic -1734 NM_172314 64806 Hs.302036 NM_022789 ENSG00000166090 IL25 IL17E interleukin 25 protein-coding 182.25-35 chr3 59455636 59455857 + 1.25 NA Intergenic Charlie29a|DNA|hAT-Charlie 202751 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 161-24 chr14 57419174 57419393 + 1.25 NA Intergenic L2a|LINE|L2 28697 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 288.5-2 chr1 150419120 150419631 + 1.25 NA intron (NM_015203, intron 2 of 10) intron (NM_015203, intron 2 of 10) 55264 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 161.75-54 chr7 33107290 33107580 + 1.25 NA intron (NM_203288, intron 1 of 5) intron (NM_203288, intron 1 of 5) 1969 NM_203288 6100 Hs.326805 NM_203288 ENSG00000164610 RP9 PAP-1|PAP1 RP9 pre-mRNA splicing factor protein-coding 179.75-26 chr2 58376630 58376827 + 1.25 NA Intergenic L2a|LINE|L2 100851 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 240.5-45 chr8 65041771 65042089 + 1.25 NA Intergenic LTR16C|LTR|ERVL 138410 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 346-13 chr7 23140481 23140837 + 1.25 NA intron (NM_001031710, intron 4 of 10) L1M5|LINE|L1 33998 NM_018846 55975 Hs.654817 NM_018846 ENSG00000122550 KLHL7 CISS3|KLHL6|SBBI26 kelch like family member 7 protein-coding 241.25-2 chr10 93512666 93512908 + 1.25 NA intron (NM_018131, intron 4 of 8) intron (NM_018131, intron 4 of 8) 16175 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 190.5-31 chr17 55127347 55127621 + 1.25 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -137476 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 262.5-24 chr20 57932922 57933384 + 1.25 NA Intergenic MER21B|LTR|ERVL -70751 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 249.25-15 chr20 63042680 63042971 + 1.25 NA intron (NR_033369, intron 1 of 5) LTR33A_|LTR|ERVL 4814 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 133-46 chr3 183421333 183421452 + 1.25 NA intron (NM_015078, intron 1 of 29) L1M4b|LINE|L1 6877 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 238.25-28 chr8 26709632 26709911 + 1.25 NA Intergenic Intergenic 131366 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 116-44 chr3 13182541 13182689 + 1.25 NA Intergenic L1MC|LINE|L1 -109186 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 139.5-108 chr8 113410499 113410657 + 1.25 NA intron (NM_001363185, intron 1 of 66) L2|LINE|L2 26361 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 152-30 chr18 59316925 59317221 + 1.25 NA intron (NM_181654, intron 1 of 2) intron (NM_181654, intron 1 of 2) 1576 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 165.5-32 chr15 90207685 90207918 + 1.25 NA intron (NM_198925, intron 1 of 13) intron (NM_198925, intron 1 of 13) 6471 NM_001324033 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 153.5-48 chr2 179620672 179621016 + 1.25 NA intron (NR_148056, intron 3 of 9) L2c|LINE|L2 -34938 NR_104234 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 266.5-10 chr14 80198145 80198573 + 1.25 NA non-coding (NR_158991, exon 4 of 4) non-coding (NR_158991, exon 4 of 4) -13060 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 231.5-44 chr7 53936762 53937025 + 1.25 NA Intergenic Intergenic -124962 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 252.5-22 chr20 19112095 19112491 + 1.25 NA Intergenic Intergenic -100349 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 137.75-73 chr5 102336277 102336425 + 1.25 NA Intergenic L1MB2|LINE|L1 -40067 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 140.25-25 chr16 7576062 7576368 + 1.25 NA intron (NM_145893, intron 2 of 13) AluJr|SINE|Alu 243370 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 141.75-80 chr7 4771052 4771394 + 1.25 NA 3' UTR (NM_001037165, exon 9 of 9) 3' UTR (NM_001037165, exon 9 of 9) -4400 NM_014855 9907 Hs.558440 NM_014855 ENSG00000242802 AP5Z1 KIAA0415|SPG48|zeta adaptor related protein complex 5 subunit zeta 1 protein-coding 193.75-43 chr8 33536049 33536214 + 1.25 NA Intergenic MIRc|SINE|MIR 22656 NR_003041 692084 NR_003041 ENSG00000239039 SNORD13 RNU13|SNORD13A|U13 small nucleolar RNA, C/D box 13 snoRNA 180.25-60 chr7 17238151 17238372 + 1.25 NA Intergenic Intergenic -60391 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 115-76 chr8 92722455 92722642 + 1.25 NA intron (NR_046114, intron 1 of 2) L1PA15|LINE|L1 63512 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 198.25-4 chr10 10865317 10865545 + 1.25 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 66706 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 140 chr1 36152506 36152714 + 1.25 NA intron (NM_001270895, intron 1 of 4) AluSx|SINE|Alu -3096 NM_001270894 27095 Hs.523131 NM_014408 ENSG00000054116 TRAPPC3 BET3 trafficking protein particle complex 3 protein-coding 206-28 chr5 31986261 31986652 + 1.25 NA intron (NM_178140, intron 3 of 24) intron (NM_178140, intron 3 of 24) -50297 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 230.25-21 chr4 36023794 36024018 + 1.25 NA intron (NR_146893, intron 35 of 36) L1PA3|LINE|L1 220033 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 150-87 chr9 115503229 115503382 + 1.25 NA Intergenic L1ME3D|LINE|L1 240934 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 246.75-6 chr11 113581088 113581314 + 1.25 NA Intergenic Intergenic -105803 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 300.5-12 chr2 82171124 82171407 + 1.25 NA Intergenic Intergenic -685538 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 163.75-25 chr18 7240677 7240841 + 1.25 NA Intergenic MER77|LTR|ERVL 9655 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 264-7 chr13 33535643 33536127 + 1.25 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 140909 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 215.25-39 chr8 139589142 139589518 + 1.25 NA Intergenic MIR|SINE|MIR 113793 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 198.25-24 chr2 179585841 179586166 + 1.25 NA promoter-TSS (NM_001282725) promoter-TSS (NM_001282725) -97 NR_104234 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 278.75-14 chr7 1049490 1049826 + 1.25 NA intron (NM_001303473, intron 1 of 1) intron (NM_001303473, intron 1 of 1) 5112 NM_001303473 115330 Hs.585007 NM_138445 ENSG00000164849 GPR146 PGR8 G protein-coupled receptor 146 protein-coding 270-22 chr5 10756139 10756488 + 1.25 NA intron (NM_004394, intron 1 of 3) intron (NM_004394, intron 1 of 3) 4921 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 165.25-16 chr14 87324982 87325212 + 1.25 NA Intergenic Intergenic 330197 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 298.75-4 chr18 12466684 12466965 + 1.25 NA intron (NM_020148, intron 9 of 15) L1PA10|LINE|L1 34050 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 179.5-41 chr15 68463316 68463483 + 1.25 NA Intergenic Intergenic -31236 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 188-33 chr5 168204421 168204605 + 1.25 NA exon (NM_001368146, exon 18 of 28) exon (NM_001368146, exon 18 of 28) 27859 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 165.5-64 chr3 142998618 142998830 + 1.25 NA intron (NR_125393, intron 4 of 4) AluJb|SINE|Alu 2743 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 201.75-20 chr2 152065506 152065739 + 1.25 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 33141 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 167.25-45 chr22 43735009 43735169 + 1.25 NA intron (NM_198856, intron 5 of 29) intron (NM_198856, intron 5 of 29) 77216 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 218.25-30 chr3 146987098 146987415 + 1.25 NA Intergenic L2a|LINE|L2 65333 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 278-3 chr10 72118311 72118866 + 1.25 NA intron (NM_001369103, intron 8 of 9) AluSq2|SINE|Alu -29556 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 179-46 chr5 22781997 22782376 + 1.25 NA intron (NM_004061, intron 1 of 14) THE1D-int|LTR|ERVL-MaLR 71158 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 210.25-34 chr5 15065716 15065946 + 1.25 NA Intergenic Intergenic -194053 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 140.5-22 chr13 56427286 56427459 + 1.25 NA Intergenic Intergenic -713546 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 219.75-39 chr7 3074153 3074418 + 1.25 NA Intergenic Intergenic -30418 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 236.75-11 chr2 36815890 36816200 + 1.25 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 119338 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 160.75-55 chr6 37545706 37545889 + 1.25 NA Intergenic Intergenic 9625 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 211.25-43 chrX 95174535 95174843 + 1.25 NA Intergenic L1PA13|LINE|L1 -111463 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 241-9 chr11 125766464 125766775 + 1.25 NA Intergenic Intergenic 12209 NM_212555 399967 Hs.369185 NM_212555 ENSG00000196844 PATE2 C11orf38|PATE-M|UNQ3112 prostate and testis expressed 2 protein-coding 138.5-66 chr20 41100884 41101038 + 1.25 NA intron (NR_109889, intron 5 of 6) MER44C|DNA|TcMar-Tigger -36582 NM_002660 5335 Hs.268177 NM_002660 ENSG00000124181 PLCG1 NCKAP3|PLC-II|PLC1|PLC148|PLCgamma1 phospholipase C gamma 1 protein-coding 293.5-3 chr10 125372710 125373021 + 1.25 NA Intergenic Intergenic -201506 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 113-9 chr1 168018921 168019067 + 1.25 NA intron (NM_001198956, intron 11 of 21) intron (NM_001198956, intron 11 of 21) 20334 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 283.75-3 chr17 56067909 56068243 + 1.25 NA Intergenic L2b|LINE|L2 -85399 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 119.5-88 chr4 43423816 43423953 + 1.25 NA Intergenic MIRb|SINE|MIR 68659 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 230-14 chr2 81116242 81116548 + 1.25 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 350551 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 161.75-36 chr3 155268793 155269011 + 1.25 NA Intergenic Intergenic 24781 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 228.75-11 chr12 20734267 20734569 + 1.25 NA intron (NM_017435, intron 10 of 14) intron (NM_017435, intron 10 of 14) 38953 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 142.25-74 chrX 24661550 24661712 + 1.25 NA intron (NM_001163264, intron 1 of 7) L1MC5|LINE|L1 11256 NM_001163264 9468 Hs.660708 NM_004845 ENSG00000102230 PCYT1B CCTB|CTB phosphate cytidylyltransferase 1, choline, beta protein-coding 150.5-47 chr2 110169151 110169294 + 1.25 NA intron (NM_207181, intron 5 of 19) (TAT)n|Simple_repeat|Simple_repeat 35791 NM_000272 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 184.25-29 chr22 47475058 47475364 + 1.25 NA intron (NR_109967, intron 1 of 2) L1MC3|LINE|L1 11900 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 325 chr1 61740505 61740960 + 1.25 NA Intergenic L1PA15|LINE|L1 -1748 NM_001350145 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 208.5-36 chr19 37517703 37517965 + 1.25 NA intron (NM_001013659, intron 2 of 7) (TTATTG)n|Simple_repeat|Simple_repeat -10747 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 155.5-35 chr15 93579273 93579548 + 1.25 NA Intergenic L1MEc|LINE|L1 -277150 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 116.5-123 chr8 129880214 129880467 + 1.25 NA intron (NM_001353257, intron 2 of 11) intron (NM_001353257, intron 2 of 11) 59471 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 235-20 chr18 21312792 21313119 + 1.25 NA intron (NM_001142966, intron 1 of 32) L1PREC2|LINE|L1 70713 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 240.5-36 chr4 94736243 94736599 + 1.25 NA Intergenic AluY|SINE|Alu 21112 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 181-51 chr9 124610872 124611124 + 1.25 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -47438 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 257.5-33 chr9 15901904 15902236 + 1.25 NA intron (NM_001355547, intron 23 of 24) Charlie7|DNA|hAT-Charlie 338092 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 149.25-32 chr2 57475833 57476109 + 1.25 NA Intergenic Intergenic -431680 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 139.75-18 chr12 28372915 28373106 + 1.25 NA intron (NM_001330367, intron 7 of 11) L1PB|LINE|L1 -182272 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 167-68 chr8 120403617 120403817 + 1.25 NA intron (NM_014078, intron 6 of 6) intron (NM_014078, intron 6 of 6) 41433 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 142-37 chr20 45436020 45436198 + 1.25 NA intron (NR_159957, intron 2 of 3) intron (NR_159957, intron 2 of 3) 8687 NR_159957 105372631 Hs.729907 NR_159957 LOC105372631 - uncharacterized LOC105372631 ncRNA 175.75-31 chr3 79985628 79985950 + 1.25 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -217791 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 170-32 chr3 70609504 70609721 + 1.25 NA Intergenic Intergenic -296974 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 177.25-30 chr22 28999375 28999654 + 1.25 NA intron (NM_001206998, intron 2 of 8) intron (NM_001206998, intron 2 of 8) 31962 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 182.25-54 chr7 115364086 115364349 + 1.25 NA Intergenic L1M3c|LINE|L1 -132862 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 125-85 chr6 150596769 150596892 + 1.25 NA Intergenic MIRb|SINE|MIR -3055 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 185.75-10 chr10 94334610 94334938 + 1.25 NA intron (NM_022451, intron 19 of 20) intron (NM_022451, intron 19 of 20) 28165 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 167.5-45 chr20 50110753 50110973 + 1.25 NA intron (NM_001257398, intron 1 of 4) L2a|LINE|L2 2287 NM_001282578 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 123.25-56 chr3 89298828 89298978 + 1.25 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 191282 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 232.25 chr1 9078520 9078903 + 1.25 NA Intergenic LTR23|LTR|ERV1 -6452 NM_001328619 6518 Hs.530003 NM_003039 ENSG00000142583 SLC2A5 GLUT-5|GLUT5 solute carrier family 2 member 5 protein-coding 341.25-2 chr10 106488965 106489290 + 1.25 NA Intergenic Intergenic 348962 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 286.75-5 chr2 73470066 73470517 + 1.25 NA intron (NM_015120, intron 9 of 22) L1M4c|LINE|L1 13188 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 140.25-61 chr4 33420525 33420661 + 1.25 NA Intergenic Intergenic 619300 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 279.25-5 chr12 22813265 22813689 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 188306 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 168.25-56 chr7 22964490 22964730 + 1.25 NA intron (NM_032581, intron 7 of 10) intron (NM_032581, intron 7 of 10) 49520 NM_001363467 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 167-56 chr6 52460013 52460253 + 1.25 NA intron (NR_033327, intron 4 of 9) L1ME1|LINE|L1 39125 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 173.5-59 chr21 27843658 27843952 + 1.25 NA Intergenic Intergenic 121426 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 209.5-19 chr2 218163694 218163942 + 1.25 NA 3' UTR (NM_000634, exon 2 of 2) 3' UTR (NM_000634, exon 2 of 2) 3144 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 175.25-38 chr3 56132848 56133272 + 1.25 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -280466 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 223.25-28 chr7 28947825 28948047 + 1.25 NA Intergenic L1MC4|LINE|L1 10394 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 225-45 chr9 105868797 105869031 + 1.25 NA Intergenic Intergenic 174373 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 177.75-73 chrX 112099558 112099715 + 1.25 NA intron (NM_001004308, intron 1 of 2) L2c|LINE|L2 16611 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 246.25-11 chr2 33621193 33621509 + 1.25 NA Intergenic AluY|SINE|Alu -21989 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 153.25-7 chr10 55786353 55786681 + 1.25 NA Intergenic Intergenic -158575 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 222.75-10 chr12 69891095 69891390 + 1.25 NA intron (NM_182530, intron 7 of 24) MLT1G1|LTR|ERVL-MaLR 66015 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 194-30 chr5 60291510 60291687 + 1.25 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 81065 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 159.5-80 chr8 128058087 128058320 + 1.25 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 9051 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 137-10 chr10 24348669 24348835 + 1.25 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 73067 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 122.75-58 chr4 44368615 44368722 + 1.25 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 80141 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 187.25-25 chr17 27307146 27307379 + 1.25 NA intron (NM_001348350, intron 5 of 7) intron (NM_001348350, intron 5 of 7) 13148 NM_015626 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 262.5-40 chr8 125261378 125261721 + 1.25 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -168809 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 188-34 chr6 34307642 34307837 + 1.25 NA intron (NM_001202470, intron 6 of 8) L1MCa|LINE|L1 -58631 NM_178508 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 170.5-58 chr5 21005392 21005640 + 1.25 NA Intergenic Intergenic -389981 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 131.75-28 chr13 109279061 109279170 + 1.25 NA Intergenic Intergenic -111812 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 394.5-3 chr2 187031654 187032103 + 1.25 NA Intergenic L1MA4A|LINE|L1 -182708 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 138.5-70 chr3 63855430 63855625 + 1.25 NA intron (NM_025075, intron 1 of 7) intron (NM_025075, intron 1 of 7) -5118 NR_104326 100874039 NR_104326 ENSG00000240549 THOC7-AS1 - THOC7 antisense RNA 1 ncRNA 143.25-16 chr11 99459951 99460204 + 1.25 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -96068 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 179.5-23 chr12 13865085 13865312 + 1.25 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 115158 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 136.75-9 chr10 32318301 32318451 + 1.25 NA intron (NM_001282391, intron 1 of 13) intron (NM_001282391, intron 1 of 13) 28782 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 166-46 chr5 25991016 25991156 + 1.25 NA Intergenic Intergenic 800133 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 182.5-69 chr8 122258678 122258961 + 1.25 NA Intergenic MamRep137|DNA|TcMar-Tigger 309825 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 276-3 chr12 89985969 89986306 + 1.25 NA Intergenic (CATGT)n|Simple_repeat|Simple_repeat 38444 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 207.75-11 chr13 24871054 24871324 + 1.25 NA intron (NM_031277, intron 32 of 35) intron (NM_031277, intron 32 of 35) 51672 NR_047594 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 354.75 chr10 43898851 43899336 + 1.25 NA Intergenic Intergenic -10203 NR_033846 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 288.75-8 chr18 35169747 35170136 + 1.25 NA Intergenic Intergenic -71093 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 225.25-16 chr20 22200827 22201063 + 1.25 NA Intergenic L1PA12|LINE|L1 81856 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 123.5-72 chr3 159153377 159153526 + 1.25 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 84132 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 120.5-116 chrX 24820470 24820653 + 1.25 NA intron (NM_016937, intron 30 of 36) L2c|LINE|L2 76120 NR_003007 677773 Hs.689695 NR_003007 ENSG00000251869 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 243.75-21 chr4 73239626 73240021 + 1.25 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) -16766 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 199-39 chr6 62095888 62096155 + 1.25 NA intron (NR_146874, intron 2 of 13) L1MA6|LINE|L1 190204 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 195.75-31 chr3 125657152 125657362 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -61760 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 289-3 chr10 75708634 75708880 + 1.25 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -3698 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 127.75-22 chr12 60245873 60246024 + 1.25 NA Intergenic Intergenic 556578 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 221.5-29 chr3 42410456 42410673 + 1.25 NA promoter-TSS (NM_144634) promoter-TSS (NM_144634) 46 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 180.75-64 chr9 103018150 103018353 + 1.25 NA intron (NM_001340, intron 7 of 7) intron (NM_001340, intron 7 of 7) 22918 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 160.75-11 chr10 90512699 90512873 + 1.25 NA intron (NR_110657, intron 2 of 6) MLT1A0|LTR|ERVL-MaLR 28019 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 304.75-11 chr6 145098946 145099418 + 1.25 NA Intergenic Intergenic 587695 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 213.5-55 chr9 98435816 98435997 + 1.25 NA intron (NM_005458, intron 7 of 18) L2b|LINE|L2 -180257 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 278.5-7 chr14 20800685 20800943 + 1.25 NA TTS (NM_002933) TTS (NM_002933) 1550 NM_198232 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 204.75-16 chr15 99198927 99199140 + 1.25 NA intron (NR_109947, intron 8 of 12) MLT2C2|LTR|ERVL 50548 NM_001288615 64927 Hs.513195 NM_022905 ENSG00000103852 TTC23 HCC-8 tetratricopeptide repeat domain 23 protein-coding 158.25-18 chr15 51706006 51706278 + 1.25 NA intron (NM_013243, intron 10 of 11) intron (NM_013243, intron 10 of 11) 24639 NM_013243 29106 Hs.232618 NM_013243 ENSG00000104112 SCG3 SGIII secretogranin III protein-coding 211.75-15 chr14 47960439 47960677 + 1.25 NA Intergenic MIRb|SINE|MIR -165544 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 263.5-23 chr3 111533935 111534288 + 1.25 NA Intergenic MER21C|LTR|ERVL -8086 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 262.75-15 chr4 47155226 47155689 + 1.25 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 123890 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 310-16 chr4 128342598 128342859 + 1.25 NA Intergenic MER58A|DNA|hAT-Charlie -54915 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 239-19 chr2 34490841 34491054 + 1.25 NA Intergenic L1MA4A|LINE|L1 -186610 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 312.75-4 chr17 28887066 28887391 + 1.25 NA intron (NM_001330170, intron 2 of 10) intron (NM_001330170, intron 2 of 10) 10505 NM_004475 2319 Hs.514038 NM_004475 ENSG00000132589 FLOT2 ECS-1|ECS1|ESA|ESA1|M17S1 flotillin 2 protein-coding 147.5-79 chr8 66813675 66813847 + 1.25 NA intron (NM_001204173, intron 6 of 18) intron (NM_001204173, intron 6 of 18) 38556 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 182.75-4 chr11 56923277 56923502 + 1.25 NA Intergenic Intergenic -65525 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 214.5-43 chr4 60905119 60905326 + 1.25 NA Intergenic Intergenic -17397 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 174.75-43 chr5 73531103 73531367 + 1.25 NA Intergenic MER4A|LTR|ERV1 32810 NM_001037637 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 198.5-26 chr2 121054401 121054654 + 1.25 NA Intergenic Intergenic 230675 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 221.75-23 chr7 6161736 6161980 + 1.25 NA TTS (NM_004227) TTS (NM_004227) 10279 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 254-9 chr2 58349973 58350294 + 1.25 NA Intergenic Intergenic 74256 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 175.75-52 chr8 139719578 139719739 + 1.25 NA Intergenic Intergenic -16535 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 151-65 chr7 18508892 18509124 + 1.25 NA promoter-TSS (NM_001204148) promoter-TSS (NM_001204148) -262 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 147.25-23 chr18 58383003 58383223 + 1.25 NA intron (NM_001144965, intron 24 of 30) intron (NM_001144965, intron 24 of 30) -67961 NR_029667 406906 NR_029667 ENSG00000284440 MIR122 MIR122A|MIRN122|MIRN122A|hsa-mir-122|miRNA122|miRNA122A|mir-122 microRNA 122 ncRNA 131-61 chr6 76668736 76668887 + 1.25 NA Intergenic LTR33|LTR|ERVL -75188 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 151.5-85 chr8 118220027 118220230 + 1.25 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -108309 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 162.25-21 chr2 35302588 35302834 + 1.25 NA Intergenic Intergenic -168694 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 120.75-4 chr1 217326835 217326978 + 1.25 NA Intergenic MIRb|SINE|MIR -189204 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 261-42 chr7 41970230 41970560 + 1.25 NA intron (NM_000168, intron 13 of 14) MIRc|SINE|MIR 266814 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 126.75-20 chr14 20546594 20546860 + 1.25 NA Intergenic Intergenic 14204 NM_001110358 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 150-63 chr5 55610215 55610427 + 1.25 NA Intergenic Intergenic -75243 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 197.5-24 chr16 89952918 89953171 + 1.25 NA promoter-TSS (NR_145807) promoter-TSS (NR_145807) -333 NR_145807 109623464 NR_145807 SNORA119 - small nucleolar RNA, H/ACA box 119 snoRNA 192.25-16 chr12 102018177 102018473 + 1.25 NA intron (NM_016053, intron 6 of 6) L1MB3|LINE|L1 43666 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 171.5-52 chr20 50500420 50500613 + 1.25 NA Intergenic MIRb|SINE|MIR -9805 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 283.25-3 chr1 167422516 167422916 + 1.25 NA non-coding (NR_037163, exon 17 of 17) non-coding (NR_037163, exon 17 of 17) 93646 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 144.25-49 chr3 98943218 98943490 + 1.25 NA Intergenic Intergenic -41659 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 362.75-4 chr5 64263824 64264161 + 1.25 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 98149 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 141-23 chr15 47818871 47819058 + 1.25 NA intron (NR_120336, intron 3 of 4) intron (NR_120336, intron 3 of 4) 27272 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 139-49 chr3 71098043 71098201 + 1.25 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) 32464 NM_001349337 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 254.75-21 chr8 134044294 134044709 + 1.25 NA Intergenic Intergenic 158005 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 141.5-29 chr14 47074980 47075160 + 1.25 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 268176 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 121.25-7 chr11 20931939 20932116 + 1.25 NA intron (NM_201551, intron 9 of 18) intron (NM_201551, intron 9 of 18) 262441 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 123.25-40 chr2 26523965 26524175 + 1.25 NA intron (NM_194248, intron 3 of 46) intron (NM_194248, intron 3 of 46) 34686 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 154-25 chr16 1273398 1273539 + 1.25 NA Intergenic Intergenic 17399 NM_012217 23430 Hs.677789 NM_012217 ENSG00000095917 TPSD1 MCP7-LIKE|MCP7L1|MMCP-7L tryptase delta 1 protein-coding 181-24 chr14 69930661 69930827 + 1.25 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -47389 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 137.75-42 chr2 7016761 7017093 + 1.25 NA intron (NM_001349186, intron 4 of 7) LTR78|LTR|ERV1 60953 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 158.75-67 chr6 126989441 126989664 + 1.25 NA Intergenic Intergenic -129119 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 167.75-41 chr22 34740113 34740308 + 1.25 NA Intergenic MLT2B4|LTR|ERVL 257706 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 218.5-24 chr2 122250650 122251120 + 1.25 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 495234 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 185.5-19 chr11 78859289 78859509 + 1.25 NA intron (NM_001098816, intron 10 of 33) intron (NM_001098816, intron 10 of 33) -284535 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 200.5-65 chr8 121007848 121008108 + 1.25 NA Intergenic LTR8|LTR|ERV1 -195932 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 198.75-45 chr7 37074684 37074967 + 1.25 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 77029 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 157-33 chr20 32861108 32861287 + 1.25 NA intron (NM_001143967, intron 1 of 26) intron (NM_001143967, intron 1 of 26) 2274 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 174-34 chr20 14478674 14478862 + 1.25 NA intron (NM_001351663, intron 3 of 17) L1MDb|LINE|L1 -75616 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 174.75-44 chr5 119004080 119004332 + 1.25 NA intron (NR_134249, intron 7 of 8) MER5B|DNA|hAT-Charlie -15659 NM_173666 285605 Hs.655891 NM_173666 ENSG00000169570 DTWD2 - DTW domain containing 2 protein-coding 166-50 chr6 53492081 53492319 + 1.25 NA Intergenic L1MEc|LINE|L1 52901 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 222.5-27 chr20 47933876 47934126 + 1.25 NA Intergenic Intergenic -49225 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 147.5-8 chr1 236627441 236627707 + 1.25 NA Intergenic L2a|LINE|L2 -23058 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 164-32 chr2 185280447 185280645 + 1.25 NA Intergenic Intergenic -113474 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 249.75-7 chr11 110420577 110420835 + 1.25 NA Intergenic PRIMA4-int|LTR|ERV1 -9242 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 135.5-44 chr17 48154499 48154631 + 1.25 NA intron (NM_001075099, intron 11 of 12) intron (NM_001075099, intron 11 of 12) 1946 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 127-4 chr1 92478773 92478874 + 1.25 NA intron (NM_001127215, intron 5 of 6) intron (NM_001127215, intron 5 of 6) 5131 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 360.25-4 chr8 138853827 138854190 + 1.25 NA intron (NM_152888, intron 3 of 64) intron (NM_152888, intron 3 of 64) 60033 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 240.75-9 chr14 48354096 48354288 + 1.25 NA Intergenic Intergenic -559178 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 132.75-29 chr12 10698797 10699017 + 1.25 NA TTS (NM_003651) TTS (NM_003651) 24416 NM_003651 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 136.5-88 chr5 8701303 8701473 + 1.25 NA Intergenic L1MEc|LINE|L1 -138344 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 215.75-23 chr5 135874727 135874960 + 1.25 NA intron (NR_146141, intron 6 of 8) intron (NR_146141, intron 6 of 8) 20998 NM_000590 3578 Hs.960 NM_000590 ENSG00000145839 IL9 HP40|IL-9|P40 interleukin 9 protein-coding 137-7 chr1 231542539 231542720 + 1.25 NA intron (NR_028393, intron 4 of 15) intron (NR_028393, intron 4 of 15) 13960 NM_005999 7257 Hs.13318 NM_005999 ENSG00000116918 TSNAX C3PO|TRAX translin associated factor X protein-coding 272.75-4 chr10 10749749 10750000 + 1.25 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 45040 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 193.25-30 chr4 95688809 95689021 + 1.25 NA Intergenic L1MDa|LINE|L1 -139942 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 140.75-72 chr9 105830297 105830493 + 1.25 NA Intergenic MLT2C1|LTR|ERVL 135854 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 194-45 chr9 93693557 93693840 + 1.25 NA Intergenic L1MD2|LINE|L1 98857 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 159-26 chr15 81939747 81940118 + 1.25 NA Intergenic Intergenic 106086 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 184.5-19 chr12 15200395 15200660 + 1.25 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 20890 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 135.75-30 chr14 46193659 46193846 + 1.25 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 129593 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 123-6 chr1 217495370 217495536 + 1.25 NA intron (NM_018040, intron 7 of 9) intron (NM_018040, intron 7 of 9) 135637 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 234-17 chr14 77687846 77688146 + 1.25 NA intron (NM_006020, intron 3 of 5) L2c|LINE|L2 20027 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 134.75-65 chr6 128528036 128528222 + 1.25 NA Intergenic MIR|SINE|MIR -7530 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 122-42 chr20 48134417 48134576 + 1.25 NA Intergenic L1MB1|LINE|L1 -144379 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 185.5-49 chr3 51313607 51313876 + 1.25 NA intron (NM_004947, intron 31 of 52) intron (NM_004947, intron 31 of 52) -71550 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 251.25-4 chr1 187339989 187340335 + 1.25 NA intron (NR_126347, intron 3 of 3) intron (NR_126347, intron 3 of 3) -103466 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 212-23 chr2 44072988 44073255 + 1.25 NA Intergenic L1MA5|LINE|L1 -77132 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 235.5-35 chr3 145768555 145768785 + 1.25 NA Intergenic Intergenic 300515 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 252.75-14 chr2 152078663 152079133 + 1.25 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 19865 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 215.25-35 chr6 120677151 120677373 + 1.25 NA Intergenic Intergenic 657218 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 126.25-93 chr8 129082171 129082344 + 1.25 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -116256 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 136.5-104 chr8 79489287 79489575 + 1.25 NA Intergenic L1MC3|LINE|L1 -121686 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 184-21 chr18 60395749 60395993 + 1.25 NA Intergenic Intergenic -23096 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 192.75-32 chr4 71281617 71281881 + 1.25 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -57304 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 170.25-64 chr8 120928798 120929034 + 1.25 NA Intergenic Intergenic -116870 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 113-80 chr5 65120233 65120326 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 351349 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 261-19 chr18 5324296 5324584 + 1.25 NA Intergenic Intergenic -27387 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 282.5-8 chr14 71793637 71794077 + 1.25 NA Intergenic L1MB8|LINE|L1 -138314 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 275.25-15 chr2 55563315 55563581 + 1.25 NA intron (NM_020463, intron 13 of 14) AluJb|SINE|Alu 43853 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 124.75-73 chr6 38717021 38717227 + 1.25 NA intron (NM_001371, intron 1 of 91) AluJb|SINE|Alu 1813 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 125.5-26 chr11 90381653 90381779 + 1.25 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 130484 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 228-15 chr15 99594869 99595226 + 1.25 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 28564 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 190.75-33 chr2 123417723 123418010 + 1.25 NA Intergenic Intergenic -344385 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 209.25-38 chr5 175294504 175294809 + 1.25 NA Intergenic L1PA15|LINE|L1 149526 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 206.75-35 chr9 26308781 26309065 + 1.25 NA Intergenic Intergenic 242248 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 241-26 chr3 140904479 140904824 + 1.25 NA Intergenic L2|LINE|L2 -37185 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 200-48 chr8 120433424 120433665 + 1.25 NA intron (NM_014078, intron 2 of 6) intron (NM_014078, intron 2 of 6) 11606 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 156.25-71 chr8 120942555 120942814 + 1.25 NA Intergenic AluSq2|SINE|Alu -130638 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 330.5-9 chr5 179072647 179073094 + 1.25 NA intron (NM_014594, intron 2 of 4) MER33|DNA|hAT-Charlie 12497 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 177.25-6 chr10 53215936 53216134 + 1.25 NA Intergenic L1PBa|LINE|L1 -444335 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 196.75-34 chr5 105844704 105844899 + 1.25 NA Intergenic MER66-int|LTR|ERV1 745327 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 225 chr1 3224239 3224493 + 1.25 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 96391 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 137.75-4 chr1 232284867 232285088 + 1.25 NA Intergenic Intergenic 230631 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 188.5-28 chr2 101209757 101210096 + 1.25 NA Intergenic L1MA4|LINE|L1 -42960 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 123.5-63 chr22 44604048 44604158 + 1.25 NA Intergenic Intergenic 21316 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 194-3 chr1 92160794 92161011 + 1.25 NA Intergenic L1MB1|LINE|L1 -8022 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 117.5-95 chr8 142444773 142444932 + 1.25 NA Intergenic Intergenic -4797 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 135.5-108 chr8 125416416 125416661 + 1.25 NA Intergenic Intergenic -13820 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 209.5-47 chr7 91613870 91614110 + 1.25 NA Intergenic L1MC|LINE|L1 266712 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 182.75-27 chr21 31363611 31363840 + 1.25 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -19371 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 141-70 chr6 111267351 111267491 + 1.25 NA 3' UTR (NM_153369, exon 4 of 4) 3' UTR (NM_153369, exon 4 of 4) 8082 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 202-10 chr2 106279551 106279752 + 1.25 NA Intergenic AluSq2|SINE|Alu -85312 NM_001253875 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 183-67 chr7 139026598 139026862 + 1.25 NA exon (NM_080660, exon 4 of 5) exon (NM_080660, exon 4 of 5) 9312 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 188-19 chr2 31553058 31553412 + 1.25 NA intron (NM_000348, intron 1 of 4) L1M3c|LINE|L1 27703 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 134.5-85 chr6 144798954 144799106 + 1.25 NA intron (NM_007124, intron 63 of 73) AluSg|SINE|Alu 393375 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 167.25-58 chr5 15845457 15845601 + 1.25 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -89653 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 121.25-72 chr7 51970086 51970290 + 1.25 NA Intergenic MER21C|LTR|ERVL -576932 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 326.25-4 chr14 95991064 95991502 + 1.25 NA Intergenic LTR29|LTR|ERV1 -48041 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 187.25-10 chr10 37807296 37807601 + 1.25 NA intron (NM_001352493, intron 5 of 6) L1M4c|LINE|L1 -12273 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 175.75-38 chr4 150427093 150427292 + 1.25 NA intron (NM_001367550, intron 46 of 56) intron (NM_001367550, intron 46 of 56) -151897 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 199-20 chr2 19434146 19434351 + 1.25 NA Intergenic MSTA|LTR|ERVL-MaLR -75625 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 204-34 chr6 12257442 12257696 + 1.25 NA Intergenic Intergenic -32792 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 195.5-24 chr14 58820591 58820842 + 1.25 NA Intergenic Intergenic -7572 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 148-44 chr3 148861654 148861826 + 1.25 NA Intergenic Intergenic -3556 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 134.25-25 chr15 38796179 38796385 + 1.25 NA Intergenic Intergenic 99684 NR_160786 174.5-9 chr10 82572541 82572813 + 1.25 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -339757 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 203.5-3 chr1 90212144 90212416 + 1.25 NA Intergenic L1MEc|LINE|L1 217170 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 171-40 chr3 182746771 182747025 + 1.25 NA Intergenic Intergenic -46606 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 189.25 chr1 38865712 38865929 + 1.25 NA intron (NR_037637, intron 2 of 2) intron (NR_037637, intron 2 of 2) -6048 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 115-55 chr3 82203373 82203523 + 1.25 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 217306 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 169.5-74 chr7 13829193 13829463 + 1.25 NA Intergenic Intergenic 157186 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 171.75 chr1 67023120 67023464 + 1.25 NA intron (NM_015139, intron 8 of 11) L1ME1|LINE|L1 30856 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 279.5-2 chr11 67187122 67187570 + 1.25 NA intron (NR_027473, intron 5 of 20) L1M4c|LINE|L1 -52668 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 199-40 chr6 65021577 65021803 + 1.25 NA intron (NM_001292009, intron 13 of 43) THE1C-int|LTR|ERVL-MaLR -279728 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 200.25-49 chr7 139352315 139352536 + 1.25 NA intron (NM_001244584, intron 2 of 10) AluJr|SINE|Alu -7421 NM_001270643 51631 Hs.731488 NM_016019 ENSG00000146963 LUC7L2 CGI-59|CGI-74|LUC7B2 LUC7 like 2, pre-mRNA splicing factor protein-coding 170-48 chr7 39701063 39701227 + 1.25 NA intron (NM_005402, intron 4 of 4) MIR|SINE|MIR -32423 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 211.5-59 chr9 104208134 104208365 + 1.25 NA Intergenic L1MCa|LINE|L1 -61980 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 209.75-7 chr12 62888565 62888967 + 1.25 NA intron (NM_020700, intron 1 of 9) L2a|LINE|L2 46384 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 314.5-13 chr8 58230270 58230627 + 1.25 NA Intergenic Intergenic 41653 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 120.5-60 chr21 31220538 31220732 + 1.25 NA intron (NM_001353686, intron 8 of 27) intron (NM_001353686, intron 8 of 27) -59695 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 209.25-18 chr2 173053090 173053388 + 1.25 NA TTS (NM_001100397) TTS (NM_001100397) -22607 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 256.25-16 chr8 68360447 68360742 + 1.25 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -29103 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 123.75-32 chr12 112027165 112027330 + 1.25 NA 3' UTR (NM_024953, exon 24 of 24) 3' UTR (NM_024953, exon 24 of 24) 10468 NR_037430 100500889 NR_037430 ENSG00000266370 MIR3657 - microRNA 3657 ncRNA 184-46 chr6 113009302 113009546 + 1.25 NA Intergenic L2a|LINE|L2 424023 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 138.25-46 chr2 124798309 124798529 + 1.25 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 773132 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 166.25-62 chr9 130565923 130566102 + 1.25 NA Intergenic Intergenic 13482 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 123-8 chr10 31027995 31028134 + 1.25 NA intron (NM_001143766, intron 1 of 7) intron (NM_001143766, intron 1 of 7) 3873 NM_001143771 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 266.25-14 chr2 193810285 193810720 + 1.25 NA Intergenic Intergenic -533767 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 234-6 chr10 31838046 31838367 + 1.25 NA intron (NM_001270696, intron 7 of 17) L2c|LINE|L2 70720 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 226.75-18 chr3 118668834 118669082 + 1.25 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 27190 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 234.25-11 chr16 77201387 77201608 + 1.25 NA 3' UTR (NM_001286639, exon 5 of 5) 3' UTR (NM_001286639, exon 5 of 5) 2089 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 173.75-34 chr4 66199323 66199597 + 1.25 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -77364 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 234.25-7 chr14 50634939 50635315 + 1.25 NA 3' UTR (NM_021818, exon 5 of 5) 3' UTR (NM_021818, exon 5 of 5) 33179 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 240.75-13 chr17 60729450 60729850 + 1.25 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 51799 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 255-14 chr2 51351915 51352135 + 1.25 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 319424 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 113.75-73 chr3 83284398 83284539 + 1.25 NA Intergenic Intergenic 1298326 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 152.25-6 chr1 180279496 180279718 + 1.25 NA TTS (NM_033343) TTS (NM_033343) -4926 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 215-42 chr8 87915102 87915312 + 1.25 NA Intergenic Intergenic -41192 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 176.5-34 chr16 79926426 79926800 + 1.25 NA Intergenic MIR|SINE|MIR 131364 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 196-27 chr3 7687964 7688199 + 1.25 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -152797 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 132-5 chr1 209427767 209427917 + 1.25 NA promoter-TSS (NR_145437) promoter-TSS (NR_145437) -978 NR_145436 642587 Hs.510543 NR_145433 ENSG00000230937 MIR205HG LINC00510|NPC-A-5 MIR205 host gene ncRNA 140.75-24 chr16 85630793 85630948 + 1.25 NA intron (NM_001278184, intron 1 of 14) intron (NM_001278184, intron 1 of 14) 17548 NM_001278184 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 279.5-12 chr8 92473632 92473980 + 1.25 NA Intergenic Intergenic 181688 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 195.75-41 chr5 16334128 16334595 + 1.25 NA Intergenic L1MC1|LINE|L1 106741 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 123.75-75 chr3 109145538 109145657 + 1.25 NA intron (NR_161294, intron 2 of 2) L1MB4|LINE|L1 8878 NR_161294 401081 Hs.280892 NM_001351622 ENSG00000241224 C3orf85 - chromosome 3 open reading frame 85 protein-coding 146.75-28 chr3 97116451 97116658 + 1.25 NA intron (NM_001080448, intron 3 of 17) L1MA9|LINE|L1 301960 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 196.5-48 chr20 60525548 60525733 + 1.25 NA Intergenic Intergenic -38922 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 230.25-2 chr10 6612874 6613173 + 1.25 NA Intergenic L1MB8|LINE|L1 -5693 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 324.5-12 chr3 34328918 34329193 + 1.25 NA Intergenic L1MA8|LINE|L1 530425 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 154.25-30 chr14 87215619 87215823 + 1.25 NA Intergenic Intergenic 309943 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 221.75-10 chr17 72506822 72507099 + 1.25 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 85844 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 286-23 chr8 66269331 66269745 + 1.25 NA Intergenic Intergenic 77424 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 170.5-66 chr5 87735627 87735778 + 1.25 NA Intergenic Intergenic 73660 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 194-35 chr7 2233964 2234272 + 1.25 NA TTS (NM_013393) TTS (NM_013393) -1173 NM_001013836 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 197.75-41 chr6 62013832 62014142 + 1.25 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 272238 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 166.5-46 chr18 7797769 7797990 + 1.25 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 230563 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 224.5-24 chr2 183920267 183920515 + 1.25 NA Intergenic MSTD|LTR|ERVL-MaLR -458584 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 197.25-6 chr10 18503899 18504080 + 1.25 NA intron (NM_201593, intron 5 of 13) MER103C|DNA|hAT-Charlie 103414 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 215-23 chr2 53776370 53776680 + 1.25 NA intron (NM_001164165, intron 1 of 9) intron (NM_001164165, intron 1 of 9) 8721 NM_001008708 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 193-22 chr14 59799228 59799433 + 1.25 NA intron (NM_021136, intron 1 of 8) L1MCc|LINE|L1 71446 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 175.75-49 chr8 119223643 119223806 + 1.25 NA intron (NR_149114, intron 3 of 5) intron (NR_149114, intron 3 of 5) 15361 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 189.25-39 chr5 175262649 175262884 + 1.25 NA Intergenic L1ME1|LINE|L1 181416 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 319.5-7 chr2 67690733 67691070 + 1.25 NA Intergenic Tigger14a|DNA|TcMar-Tigger 134661 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 270.25-4 chr10 104100788 104101250 + 1.25 NA Intergenic Intergenic -15139 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 202.75-29 chr7 66314805 66315085 + 1.25 NA intron (NM_003596, intron 3 of 5) L1MC4|LINE|L1 85463 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 277.75-17 chr8 99628789 99629035 + 1.25 NA intron (NM_017890, intron 33 of 61) AluJo|SINE|Alu -92051 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 315.5-9 chr20 2105210 2105765 + 1.25 NA intron (NM_080836, intron 2 of 3) intron (NM_080836, intron 2 of 3) 3660 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 120.75-12 chr11 3736679 3736861 + 1.25 NA intron (NM_001365129, intron 11 of 31) L1ME4c|LINE|L1 60776 NR_157591 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 216-18 chr17 80271259 80271612 + 1.25 NA intron (NM_020954, intron 2 of 16) intron (NM_020954, intron 2 of 16) 10583 NM_020954 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 191.25-13 chr10 124952440 124952723 + 1.25 NA intron (NM_017580, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 10458 NM_017580 54764 Hs.595158 NM_017580 ENSG00000019995 ZRANB1 TRABID zinc finger RANBP2-type containing 1 protein-coding 246-11 chr2 39614190 39614651 + 1.25 NA Intergenic Intergenic -51078 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 123.25-67 chr5 92740404 92740684 + 1.25 NA Intergenic Intergenic 830799 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 161-68 chr8 119073168 119073441 + 1.25 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -4522 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 114-30 chr13 87788902 87789012 + 1.25 NA Intergenic Intergenic 21563 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 235.75-5 chr10 60401051 60401275 + 1.25 NA intron (NM_001204403, intron 2 of 43) L1MB1|LINE|L1 -11288 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 187-27 chr2 110731443 110731768 + 1.25 NA promoter-TSS (NM_001142807) promoter-TSS (NM_001142807) -968 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 165.5-58 chr3 2063966 2064098 + 1.25 NA Intergenic L2b|LINE|L2 -34771 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 320.5-3 chr10 75770946 75771465 + 1.25 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -11556 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 193-3 chr1 210603866 210604171 + 1.25 NA intron (NM_001122834, intron 10 of 11) intron (NM_001122834, intron 10 of 11) 274652 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 179-58 chr8 120670018 120670214 + 1.25 NA intron (NM_021021, intron 2 of 6) L2c|LINE|L2 -91137 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 139.5-75 chr5 16147183 16147316 + 1.25 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 32542 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 116.5-10 chr10 19947936 19948090 + 1.25 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 131581 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 177-27 chr2 107151052 107151294 + 1.25 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 198352 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 191.25-16 chr11 78676646 78676866 + 1.25 NA intron (NM_001098816, intron 29 of 33) L1ME4a|LINE|L1 -101892 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 263.5-6 chr12 50437521 50437834 + 1.25 NA intron (NM_001330415, intron 5 of 15) intron (NM_001330415, intron 5 of 15) -18894 NR_132753 106633800 NR_132753 SNORD133 ZL142|ZL42|ggn68 small nucleolar RNA, C/D box 133 snoRNA 228.5-32 chr6 68638750 68639029 + 1.25 NA exon (NM_001704, exon 3 of 32) exon (NM_001704, exon 3 of 32) 3607 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 204.25-44 chr6 71200293 71200543 + 1.25 NA Intergenic MIR3|SINE|MIR -88393 NM_024576 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 207.75-35 chr6 56488006 56488258 + 1.25 NA intron (NM_001144770, intron 78 of 94) intron (NM_001144770, intron 78 of 94) -94004 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 140-54 chr5 161406214 161406407 + 1.25 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 141814 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 234.5-15 chr14 74851348 74851614 + 1.25 NA Intergenic AluSp|SINE|Alu 12353 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 186.75-25 chr18 66819322 66819496 + 1.25 NA Intergenic L1MC3|LINE|L1 -215319 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 206.25-7 chr11 13290841 13291090 + 1.25 NA intron (NM_001351822, intron 1 of 18) intron (NM_001351822, intron 1 of 18) 13238 NM_001351811 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 215.75-30 chr9 24654016 24654355 + 1.25 NA Intergenic L1MC|LINE|L1 -108288 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 115.75-75 chr5 28791514 28791683 + 1.25 NA Intergenic L1MCa|LINE|L1 -135272 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 115-8 chr1 176114951 176115207 + 1.25 NA intron (NM_022457, intron 9 of 19) L1MC4|LINE|L1 92165 NM_001001740 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 214.75-26 chr4 38683696 38683874 + 1.25 NA intron (NM_016531, intron 2 of 5) intron (NM_016531, intron 2 of 5) -19157 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 180.25-5 chr1 237423045 237423323 + 1.25 NA exon (NM_001035, exon 12 of 105) exon (NM_001035, exon 12 of 105) -47935 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 115.25-42 chr17 70206275 70206379 + 1.25 NA Intergenic Intergenic 36792 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 209.75-25 chr22 38976000 38976335 + 1.25 NA intron (NM_001193289, intron 4 of 4) MER1A|DNA|hAT-Charlie -6180 NM_001270411 9582 Hs.226307 NM_004900 ENSG00000179750 APOBEC3B A3B|APOBEC1L|ARCD3|ARP4|DJ742C19.2|PHRBNL|bK150C2.2 apolipoprotein B mRNA editing enzyme catalytic subunit 3B protein-coding 162.5-31 chr17 61856754 61857048 + 1.25 NA intron (NM_032043, intron 4 of 19) intron (NM_032043, intron 4 of 19) 6658 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 151-13 chr12 117475841 117475998 + 1.25 NA intron (NM_173598, intron 17 of 19) MLT1F1|LTR|ERVL-MaLR -114117 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 142-11 chr11 3792779 3792966 + 1.25 NA intron (NR_157590, intron 1 of 31) AluSz|SINE|Alu 4674 NR_157591 4928 Hs.524750 NM_005387 ENSG00000110713 NUP98 ADIR2|NUP196|NUP96 nucleoporin 98 protein-coding 210.75-3 chr1 110694700 110694988 + 1.25 NA Intergenic MIRb|SINE|MIR -19904 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 126.25-57 chr22 36996670 36996914 + 1.25 NA intron (NM_178552, intron 4 of 5) L1MEd|LINE|L1 11059 NM_001163857 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 184.5-83 chr9 21467277 21467567 + 1.25 NA intron (NR_152878, intron 2 of 2) L1ME3|LINE|L1 14891 NM_176891 338376 Hs.682604 NM_176891 ENSG00000184995 IFNE IFN-E|IFNE1|IFNT1|INFE1|PRO655 interferon epsilon protein-coding 163.25-30 chr15 51684799 51685079 + 1.25 NA intron (NM_013243, intron 4 of 11) intron (NM_013243, intron 4 of 11) 3436 NM_013243 29106 Hs.232618 NM_013243 ENSG00000104112 SCG3 SGIII secretogranin III protein-coding 159-35 chr2 66716603 66716782 + 1.25 NA Intergenic Intergenic -13465 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 255.25-17 chr3 98974308 98974695 + 1.25 NA Intergenic Intergenic -72806 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 135.75-23 chr12 33591328 33591539 + 1.25 NA Intergenic L2|LINE|L2 -151614 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 309.25-5 chr18 2062111 2062437 + 1.25 NA Intergenic L1MEd|LINE|L1 509231 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 156-69 chr8 124495642 124495863 + 1.25 NA intron (NM_001146160, intron 7 of 9) intron (NM_001146160, intron 7 of 9) 12824 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 135.5-107 chr8 118224033 118224241 + 1.25 NA intron (NM_001101676, intron 4 of 4) L2a|LINE|L2 -112318 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 162-61 chr8 121696202 121696394 + 1.25 NA Intergenic Intergenic -54858 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 145-6 chr10 62474068 62474237 + 1.25 NA intron (NM_199451, intron 4 of 7) MLT1L|LTR|ERVL-MaLR -46296 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 251.25-30 chr8 137472582 137472910 + 1.25 NA Intergenic Intergenic -59158 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 216.25-42 chr8 107875659 107875837 + 1.25 NA Intergenic L2a|LINE|L2 206191 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 129-16 chr12 72779696 72779890 + 1.25 NA Intergenic Intergenic -379397 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 127.75-81 chr6 52945549 52945734 + 1.25 NA Intergenic Intergenic -35943 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 232.75-27 chr9 38447252 38447575 + 1.25 NA Intergenic L1MA6|LINE|L1 -22959 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 118.25-35 chr15 44150053 44150203 + 1.25 NA intron (NM_001286490, intron 1 of 15) L1M4c|LINE|L1 44318 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 193.5-66 chr6 46675728 46675962 + 1.25 NA intron (NM_001204051, intron 8 of 8) MamRep605|LTR?|LTR? -4423 NR_144468 221400 Hs.656983 NM_001010870 ENSG00000180113 TDRD6 CT41.2|NY-CO-45|SPATA36|TDR2|bA446F17.4 tudor domain containing 6 protein-coding 232-21 chr5 96266582 96266951 + 1.25 NA intron (NR_130776, intron 1 of 4) L1MA4|LINE|L1 165393 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 147.25-6 chr11 26861343 26861653 + 1.25 NA Intergenic L2a|LINE|L2 -132614 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 132.75-38 chr14 72596411 72596526 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR 79648 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 211.75-38 chr8 103637609 103637796 + 1.25 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -135792 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 135.25-92 chr8 84224227 84224439 + 1.25 NA intron (NM_001354323, intron 1 of 7) MER115|DNA|hAT-Tip100 39667 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 202.75-18 chr4 56541378 56541584 + 1.25 NA intron (NM_001256475, intron 1 of 8) Kanga2_a|DNA|TcMar-Tc2 10875 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 235-32 chr4 85535987 85536326 + 1.25 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 61006 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 148.75-4 chr10 83937160 83937361 + 1.25 NA Intergenic Intergenic -202249 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 120.5-19 chr11 125513061 125513232 + 1.25 NA Intergenic LTR48|LTR|ERV1 -16836 NM_022549 9638 Hs.224008 NM_005103 ENSG00000149557 FEZ1 UNC-76 fasciculation and elongation protein zeta 1 protein-coding 166.25-4 chr10 27539535 27539796 + 1.25 NA non-coding (NR_046172, exon 6 of 6) non-coding (NR_046172, exon 6 of 6) 35361 NM_001256411 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 131.75-23 chr12 97183445 97183636 + 1.25 NA Intergenic MIR3|SINE|MIR 276074 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 134.75-76 chr9 19138427 19138557 + 1.25 NA Intergenic MIRb|SINE|MIR -10886 NR_038064 123 Hs.3416 NM_001122 ENSG00000147872 PLIN2 ADFP|ADRP perilipin 2 protein-coding 163.25-3 chr1 218235807 218235946 + 1.25 NA Intergenic Intergenic -49417 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 291.5 chr1 76826474 76826915 + 1.25 NA Intergenic Intergenic -40786 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 184.5-16 chr11 104328276 104328526 + 1.25 NA Intergenic Intergenic -164254 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 306-10 chr14 67949216 67949780 + 1.25 NA intron (NM_133509, intron 7 of 10) Tigger1|DNA|TcMar-Tigger 125906 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 238.75-9 chr2 32581602 32581823 + 1.25 NA intron (NM_016252, intron 66 of 73) L1ME3G|LINE|L1 -6894 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 197.25-42 chr3 105476015 105476219 + 1.25 NA intron (NM_001243280, intron 1 of 14) L2|LINE|L2 109208 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 167.75-53 chr4 142779143 142779369 + 1.25 NA intron (NM_001331040, intron 1 of 25) Tigger16b|DNA|TcMar-Tigger 67279 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 242.5-36 chr8 114176255 114176500 + 1.25 NA Intergenic Intergenic -739438 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 320-6 chr18 21400535 21400819 + 1.25 NA intron (NM_001142966, intron 5 of 32) MLT1O|LTR|ERVL-MaLR 158435 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 139.5-10 chr10 112083749 112083970 + 1.25 NA Intergenic Intergenic 99906 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 242-2 chr1 66167278 66167560 + 1.25 NA intron (NM_001037340, intron 1 of 14) L1MB7|LINE|L1 -116701 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 158.75-17 chr13 101258469 101258617 + 1.25 NA exon (NM_052867, exon 11 of 44) exon (NM_052867, exon 11 of 44) 157965 NM_001350751 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 142-55 chr5 53986570 53986793 + 1.25 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -35082 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 254.5-24 chr4 177400847 177401120 + 1.25 NA Intergenic Intergenic 41454 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 294.5-12 chr3 59429287 59429760 + 1.25 NA Intergenic MER3|DNA|hAT-Charlie 228974 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 185-44 chr8 119733886 119734221 + 1.25 NA intron (NM_003184, intron 25 of 25) MER20|DNA|hAT-Charlie -60663 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 227.25-28 chr4 45133345 45133547 + 1.25 NA Intergenic L1ME3F|LINE|L1 -406812 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 141.75-49 chr20 55757226 55757402 + 1.25 NA Intergenic Intergenic 248205 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 275.75-18 chr6 15565338 15565714 + 1.25 NA intron (NR_036448, intron 8 of 9) L1MB7|LINE|L1 97502 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 179.75-34 chr3 93864361 93864672 + 1.25 NA Intergenic MLT1O|LTR|ERVL-MaLR 109565 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 199.25-37 chr7 31557581 31557853 + 1.25 NA intron (NM_194300, intron 3 of 12) MIRb|SINE|MIR 4715 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 162.75-65 chr7 5612347 5612519 + 1.25 NA Intergenic AluJo|SINE|Alu 19617 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 276.75-15 chr4 46597749 46598004 + 1.25 NA Intergenic Intergenic -207748 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 182.75-2 chr10 29212811 29213065 + 1.25 NA Intergenic MLT2B4|LTR|ERVL -76132 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 202.75-38 chrX 65074689 65074864 + 1.25 NA Intergenic L1M3d|LINE|L1 -40035 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 165.25-30 chr20 45538679 45538909 + 1.25 NA intron (NM_001198986, intron 3 of 4) MIR|SINE|MIR 688 NM_080827 140870 Hs.673237 NM_080827 ENSG00000243543 WFDC6 C20orf171|HEL-S-295|WAP6|dJ461P17.11 WAP four-disulfide core domain 6 protein-coding 235.5-28 chr2 202553194 202553467 + 1.25 NA intron (NM_001204, intron 11 of 12) intron (NM_001204, intron 11 of 12) -81639 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 113-48 chr2 101279823 101279924 + 1.25 NA intron (NM_173647, intron 6 of 6) L1MD|LINE|L1 -6824 NR_003070 692205 Hs.656503 NR_003070 ENSG00000212283 SNORD89 HBII-289 small nucleolar RNA, C/D box 89 snoRNA 174-5 chr1 212579411 212579667 + 1.25 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) 14205 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 145.25-70 chr6 67763728 67763989 + 1.25 NA Intergenic L1MA7|LINE|L1 -291493 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 136-53 chr4 107570135 107570243 + 1.25 NA Intergenic L1MA5|LINE|L1 150045 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 156.25-56 chr4 73622320 73622597 + 1.25 NA Intergenic Intergenic -1827 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 233.25-13 chr16 58483179 58483399 + 1.25 NA intron (NM_022910, intron 1 of 15) intron (NM_022910, intron 1 of 15) -16854 NM_001242835 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 177.25-27 chr2 184123568 184123848 + 1.25 NA Intergenic L2a|LINE|L2 -255267 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 122.25-56 chr2 167055347 167055479 + 1.25 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 85542 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 144-70 chr7 54839077 54839232 + 1.25 NA Intergenic MIRc|SINE|MIR 79841 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 192.25-29 chr4 59616710 59616964 + 1.25 NA Intergenic Intergenic 603264 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 264.25-12 chr5 42761803 42762188 + 1.25 NA intron (NM_001134848, intron 2 of 8) Tigger3a|DNA|TcMar-Tigger 5177 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 148.5-104 chr7 115245277 115245517 + 1.25 NA Intergenic Intergenic -14042 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 266-8 chr14 79241857 79242289 + 1.25 NA intron (NR_073547, intron 14 of 20) AluSx1|SINE|Alu -37307 NM_001272020 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 237.5-3 chr1 114391309 114391520 + 1.25 NA Intergenic L2a|LINE|L2 119789 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 190.25-21 chr2 2512465 2512853 + 1.25 NA Intergenic LTR16|LTR|ERVL -181384 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 152-66 chr8 129198385 129198586 + 1.25 NA Intergenic Intergenic 42755 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 263.25-20 chr9 71881926 71882158 + 1.25 NA intron (NM_001025780, intron 1 of 3) L1M4|LINE|L1 29203 NM_001025780 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 264.75-3 chr10 51035518 51035943 + 1.25 NA intron (NM_001098512, intron 1 of 17) L1ME4a|LINE|L1 32822 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 189.5-2 chr1 116267934 116268300 + 1.25 NA Intergenic Intergenic -105127 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 159-54 chr6 137501825 137502067 + 1.25 NA Intergenic Intergenic -7552 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 181.75-11 chr13 82155220 82155401 + 1.25 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -928327 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 362.25-4 chr13 77768496 77769056 + 1.25 NA Intergenic L2a|LINE|L2 27557 NM_001366666 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 270.25-9 chr21 24292247 24292712 + 1.25 NA Intergenic Intergenic 28898 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 144.5-41 chr14 67212192 67212327 + 1.25 NA intron (NM_173526, intron 6 of 8) intron (NM_173526, intron 6 of 8) 22819 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 252-2 chr10 82084835 82085062 + 1.25 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 147972 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 176-17 chr14 38333752 38334131 + 1.25 NA Intergenic L2a|LINE|L2 -77848 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 233.75-10 chr14 52564566 52564806 + 1.25 NA intron (NM_001353361, intron 1 of 7) L2c|LINE|L2 11850 NM_001099652 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 117.5-19 chr13 103551643 103551756 + 1.25 NA Intergenic Intergenic 126499 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 268.75-22 chr4 23277725 23278112 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 563829 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 245.75-15 chr5 11479509 11479830 + 1.25 NA intron (NM_001288715, intron 2 of 20) L1PREC2|LINE|L1 109248 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 201.75-18 chr2 49861837 49862085 + 1.25 NA Intergenic Intergenic 112242 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 128.5-9 chr10 64012700 64012841 + 1.25 NA Intergenic Intergenic -490880 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 196.5-10 chr1 153555586 153555749 + 1.25 NA Intergenic MLT1G3|LTR|ERVL-MaLR -6409 NM_002960 6274 Hs.557609 NM_002960 ENSG00000188015 S100A3 S100E S100 calcium binding protein A3 protein-coding 144.75-29 chr15 87495407 87495590 + 1.25 NA Intergenic Intergenic -81431 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 188.25-9 chr12 67252945 67253235 + 1.25 NA Intergenic Intergenic -16268 NM_001329675 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 182.75-35 chr4 43779322 43779590 + 1.25 NA Intergenic Intergenic -237405 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 206.25-17 chr19 37978788 37979134 + 1.25 NA intron (NM_015073, intron 1 of 21) AluJr|SINE|Alu 71753 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 196-23 chr2 225058236 225058477 + 1.25 NA Intergenic L1MC1|LINE|L1 -15888 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 352-10 chr8 80462567 80462937 + 1.25 NA Intergenic L2c|LINE|L2 -22841 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 158-30 chr2 44682677 44682971 + 1.25 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 256064 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 218.5-19 chr2 7276859 7277156 + 1.25 NA Intergenic Intergenic -144254 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 272-9 chr13 77773735 77774307 + 1.25 NA Intergenic MIR|SINE|MIR 32802 NM_001366666 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 200.25-38 chr5 29629514 29629691 + 1.25 NA Intergenic Intergenic -233626 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 207.25-29 chr6 37036030 37036399 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger 30559 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 206.5-37 chr3 74497808 74498027 + 1.25 NA intron (NM_020872, intron 2 of 21) intron (NM_020872, intron 2 of 21) 23223 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 196.5-43 chr2 60935918 60936075 + 1.25 NA Intergenic Intergenic 54422 NM_002908 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 141.25-68 chr7 44795563 44795741 + 1.25 NA Intergenic AluJr|SINE|Alu -1029 NM_001300981 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 118.25-10 chr10 81995598 81995732 + 1.25 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 117978 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 188.75-17 chr2 6367682 6368040 + 1.25 NA intron (NR_110251, intron 2 of 2) LTR16A1|LTR|ERVL 7561 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 219-41 chr8 134094821 134095153 + 1.25 NA Intergenic MIRc|SINE|MIR 208491 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 160-38 chr6 96142460 96142659 + 1.25 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 126585 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 221.75-3 chr10 81501741 81502037 + 1.25 NA Intergenic LTR49-int|LTR|ERV1 -373305 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 292.5-12 chr5 152300484 152300835 + 1.25 NA Intergenic Intergenic 104620 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 197-49 chr8 122142097 122142516 + 1.25 NA Intergenic Intergenic 426338 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 219-15 chr2 67103183 67103489 + 1.25 NA intron (NR_110564, intron 1 of 4) L1ME4b|LINE|L1 16890 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 127-20 chr12 6134231 6134332 + 1.25 NA Intergenic L1ME3Cz|LINE|L1 -9606 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 174.75-49 chr6 94813488 94813668 + 1.25 NA Intergenic MLT1E3|LTR|ERVL-MaLR 763873 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 116-58 chr5 127238925 127239077 + 1.25 NA Intergenic L1MC4|LINE|L1 -51763 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 289.5 chr1 88744112 88744516 + 1.25 NA intron (NM_006256, intron 2 of 21) intron (NM_006256, intron 2 of 21) -59110 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 149.75-24 chr2 6766383 6766709 + 1.25 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 3765 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 119.75-86 chr8 95229691 95229927 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -13435 NR_046232 619344 Hs.741630 NR_046232 ENSG00000253351 LINC01298 C8orf69 long intergenic non-protein coding RNA 1298 ncRNA 215.75-24 chr5 159883118 159883310 + 1.25 NA Intergenic Intergenic -11830 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 214.5-54 chr6 73172026 73172316 + 1.25 NA intron (NM_001160132, intron 11 of 13) intron (NM_001160132, intron 11 of 13) -28657 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 158.75-51 chr4 106636296 106636502 + 1.25 NA Intergenic Intergenic 202775 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 185.5-57 chr5 4870216 4870391 + 1.25 NA Intergenic Intergenic 96822 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 150-34 chr19 10808264 10808460 + 1.25 NA intron (NM_001005362, intron 13 of 19) intron (NM_001005362, intron 13 of 19) 9134 NR_029586 406976 NR_029586 ENSG00000207752 MIR199A1 MIR-199-s|MIRN199A1|mir-199a-1 microRNA 199a-1 ncRNA 177-47 chr6 42563189 42563397 + 1.25 NA promoter-TSS (NM_001184801) promoter-TSS (NM_001184801) -729 NM_015255 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 245.5-20 chr3 79541565 79541824 + 1.25 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 33807 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 116.5-105 chr6 132960045 132960210 + 1.25 NA Intergenic Intergenic -127953 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 167.5-15 chr11 23053999 23054203 + 1.25 NA Intergenic Intergenic -193627 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 164.25-69 chr9 132647210 132647420 + 1.25 NA intron (NR_136309, intron 11 of 18) intron (NR_136309, intron 11 of 18) 16011 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 138.25 chr1 12347608 12347734 + 1.25 NA intron (NM_015378, intron 44 of 69) intron (NM_015378, intron 44 of 69) 117641 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 207.5-49 chr5 131738373 131738640 + 1.25 NA intron (NM_133372, intron 2 of 17) intron (NM_133372, intron 2 of 17) 58511 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 212.5-8 chr12 9654923 9655126 + 1.25 NA intron (NR_046447, intron 2 of 3) intron (NR_046447, intron 2 of 3) 6977 NR_046444 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 119.5-13 chr10 48588805 48589026 + 1.25 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) 16158 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 119.25-53 chr2 135179006 135179148 + 1.25 NA Intergenic L1M5|LINE|L1 42449 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 150.5-57 chr3 43692247 43692451 + 1.25 NA promoter-TSS (NM_001346468) promoter-TSS (NM_001346468) -755 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 193.75-21 chr2 43624592 43624803 + 1.25 NA Intergenic L2|LINE|L2 -12563 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 284.25-14 chr2 239876886 239877133 + 1.25 NA Intergenic L1MEc|LINE|L1 66085 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 221-26 chr3 10986000 10986347 + 1.25 NA Intergenic MIRb|SINE|MIR -6561 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 249.5-2 chr1 47459758 47460019 + 1.25 NA Intergenic Intergenic -22571 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 199.5-57 chr8 41466761 41466997 + 1.25 NA Intergenic Intergenic -23517 NM_001362979 51125 Hs.654773 NM_016099 ENSG00000147533 GOLGA7 GCP16|GOLGA3AP1|GOLGA7A|HSPC041 golgin A7 protein-coding 197.25-25 chr14 43408875 43409067 + 1.25 NA Intergenic L1ME1|LINE|L1 1098312 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 201.75-17 chr2 16251263 16251524 + 1.25 NA Intergenic MIR|SINE|MIR 200966 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 170.25-73 chrX 3561321 3561560 + 1.25 NA Intergenic Intergenic -29189 NR_145722 109616969 NR_145722 ENSG00000212214 SNORA48B - small nucleolar RNA, H/ACA box 48B snoRNA 215.75-32 chr9 119425912 119426242 + 1.25 NA Intergenic L1MB8|LINE|L1 -56642 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 200.25-26 chr2 180141503 180141755 + 1.25 NA Intergenic MLT1J|LTR|ERVL-MaLR -134332 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 131-2 chr1 42302624 42302777 + 1.25 NA intron (NM_001198850, intron 2 of 12) intron (NM_001198850, intron 2 of 12) 32255 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 269-9 chr2 49901857 49902237 + 1.25 NA Intergenic Intergenic 72156 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 254.25-17 chr4 54865138 54865430 + 1.25 NA Intergenic MLT1I|LTR|ERVL-MaLR 207356 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 424.25-2 chr17 21157071 21157833 + 1.25 NA intron (NM_015510, intron 1 of 6) AluJr|SINE|Alu -8735 NM_001330159 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 177.75-33 chr22 34529085 34529348 + 1.25 NA Intergenic L2a|LINE|L2 468700 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 443.25 chr12 40033287 40033829 + 1.25 NA intron (NM_052885, intron 2 of 9) intron (NM_052885, intron 2 of 9) 72523 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 119.5-103 chr6 34689678 34689852 + 1.25 NA intron (NM_022758, intron 1 of 3) intron (NM_022758, intron 1 of 3) -6389 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 230-13 chr2 55873668 55873897 + 1.25 NA intron (NM_001039349, intron 8 of 10) intron (NM_001039349, intron 8 of 10) 50000 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 269.25-5 chr16 11021421 11021730 + 1.25 NA intron (NM_015226, intron 11 of 22) AluJb|SINE|Alu 77011 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 124.25-79 chr8 72427268 72427432 + 1.25 NA Intergenic L1MD2|LINE|L1 -109875 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 191.75-18 chr18 2241583 2241786 + 1.25 NA Intergenic Intergenic 329821 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 353.75-7 chr4 30986364 30986826 + 1.25 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -184549 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 149-25 chr2 69349529 69349700 + 1.25 NA intron (NM_002056, intron 9 of 18) intron (NM_002056, intron 9 of 18) 37613 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 121-34 chr2 36421026 36421153 + 1.25 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 65311 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 156.25-5 chr10 11927937 11928149 + 1.25 NA intron (NM_080599, intron 21 of 21) intron (NM_080599, intron 21 of 21) -33333 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 175.75-7 chr13 113256640 113256873 + 1.25 NA intron (NM_001008895, intron 18 of 19) MIRb|SINE|MIR -6164 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 171.5-74 chr6 7390157 7390407 + 1.25 NA promoter-TSS (NM_001170692) promoter-TSS (NM_001170692) 453 NM_001348194 83732 Hs.437474 NM_031480 ENSG00000124784 RIOK1 AD034|RIO1|RRP10|bA288G3.1 RIO kinase 1 protein-coding 238.5-13 chr14 55284965 55285208 + 1.25 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 12932 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 183.75-37 chr3 26805166 26805550 + 1.25 NA Intergenic L1ME3A|LINE|L1 110801 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 149.5-111 chr8 134777381 134777508 + 1.25 NA Intergenic Intergenic 23163 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 125.75-4 chr1 98493339 98493515 + 1.25 NA Intergenic LTR26|LTR|ERV1 -168294 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 172.25-64 chr5 58825701 58825974 + 1.25 NA intron (NM_138453, intron 4 of 4) intron (NM_138453, intron 4 of 4) 174061 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 222.75-14 chr14 78635410 78635786 + 1.25 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 231879 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 134.5-31 chr17 14518656 14518798 + 1.25 NA Intergenic Intergenic 214987 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 217.5 chr1 45707485 45707744 + 1.25 NA intron (NM_001145349, intron 8 of 9) L1MEf|LINE|L1 19433 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 162.5-33 chr17 70649158 70649376 + 1.25 NA Intergenic Intergenic 479732 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 196.25-24 chr17 11552800 11553052 + 1.25 NA intron (NM_207386, intron 4 of 5) intron (NM_207386, intron 4 of 5) -45544 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 199.75-21 chr2 174229229 174229486 + 1.25 NA exon (NM_001328688, exon 3 of 11) exon (NM_001328688, exon 3 of 11) 19175 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 159-31 chr19 48148912 48149136 + 1.25 NA intron (NR_135500, intron 9 of 27) intron (NR_135500, intron 9 of 27) 21320 NM_001289063 3978 Hs.1770 NM_000234 ENSG00000105486 LIG1 - DNA ligase 1 protein-coding 150.25-71 chr8 73840543 73840827 + 1.25 NA intron (NR_073119, intron 1 of 5) MER8|DNA|TcMar-Tigger 38177 NR_073121 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 258.75-25 chr7 11206156 11206426 + 1.25 NA Intergenic Intergenic 232419 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 129.25-86 chrX 150986422 150986536 + 1.25 NA intron (NM_001301231, intron 3 of 4) intron (NM_001301231, intron 3 of 4) 3094 NM_001301228 3149 Hs.19114 NM_005342 ENSG00000029993 HMGB3 HMG-2a|HMG-4|HMG2A|HMG4 high mobility group box 3 protein-coding 256.25-3 chr12 97424109 97424510 + 1.25 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -38467 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 176.25-39 chr21 32254249 32254488 + 1.25 NA Intergenic AluSq2|SINE|Alu 24681 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 161.25-35 chr2 12871327 12871659 + 1.25 NA Intergenic Intergenic 134126 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 139.25-51 chr2 226174455 226174592 + 1.25 NA intron (NR_046102, intron 4 of 6) intron (NR_046102, intron 4 of 6) 31729 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 147-27 chr15 41979053 41979297 + 1.25 NA intron (NR_120334, intron 2 of 3) MLT1G|LTR|ERVL-MaLR 6412 NR_120334 101928388 Hs.738043 NR_120334 ENSG00000246740 PLA2G4E-AS1 - PLA2G4E antisense RNA 1 ncRNA 140.75-30 chr2 42541804 42541921 + 1.25 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) -26183 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 130.25-80 chr7 44938835 44938985 + 1.25 NA Intergenic Intergenic 40105 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 245.75-13 chr4 92982587 92982956 + 1.25 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 678372 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 134.25-83 chr7 10976196 10976399 + 1.25 NA intron (NR_033436, intron 2 of 16) intron (NR_033436, intron 2 of 16) 2425 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 151-23 chr16 78199350 78199497 + 1.25 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 99769 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 139.25-30 chr14 80412787 80412906 + 1.25 NA intron (NR_038355, intron 8 of 8) L1ME1|LINE|L1 -181789 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 125.75-43 chr21 29966196 29966405 + 1.25 NA Intergenic Intergenic -26248 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 225-32 chr6 121743970 121744254 + 1.25 NA Intergenic Intergenic 308466 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 181.75-8 chr11 129501888 129502147 + 1.25 NA Intergenic L1MEc|LINE|L1 115252 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 380.5-8 chr7 54327544 54328003 + 1.25 NA Intergenic L1ME4a|LINE|L1 -2924 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 147.5-80 chr8 109549036 109549296 + 1.25 NA intron (NM_001278938, intron 1 of 6) L1ME1|LINE|L1 8540 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 210.75-35 chr6 97982347 97982811 + 1.25 NA Intergenic L1MA8|LINE|L1 -41952 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 146-35 chr21 27309419 27309796 + 1.25 NA Intergenic Intergenic -342519 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 146.5-36 chr16 13622988 13623160 + 1.25 NA Intergenic Intergenic -297083 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 191.5-18 chr12 41302628 41302893 + 1.25 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 114440 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 113-89 chr6 126122481 126122658 + 1.25 NA Intergenic MER39B|LTR|ERV1 136029 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 176.25-68 chr8 32794188 32794368 + 1.25 NA Intergenic L1ME1|LINE|L1 72443 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 270.5-2 chr1 107800170 107800469 + 1.25 NA intron (NM_006113, intron 2 of 26) L1MA4|LINE|L1 -96904 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 185.5-70 chr7 25931127 25931430 + 1.25 NA Intergenic Ricksha|DNA|MULE-MuDR 18708 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 205-42 chr8 128136194 128136428 + 1.25 NA Intergenic Intergenic -13805 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 133.25-64 chr5 37920037 37920148 + 1.25 NA Intergenic L1MEd|LINE|L1 -28399 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 239-2 chr1 107143846 107144103 + 1.25 NA intron (NM_001330665, intron 1 of 6) intron (NM_001330665, intron 1 of 6) 2935 NM_001330665 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 225.5-23 chr18 11808929 11809275 + 1.25 NA intron (NM_001369387, intron 4 of 11) AluSx|SINE|Alu -42311 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 114.75-38 chr15 67848101 67848290 + 1.25 NA Intergenic L1ME3B|LINE|L1 -8150 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 189-28 chr2 150758789 150758991 + 1.25 NA Intergenic Intergenic 129993 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 138.25-86 chr8 84910563 84910785 + 1.25 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -196564 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 322.25-6 chr14 72007141 72007596 + 1.25 NA intron (NM_001370288, intron 2 of 16) MLT1F2-int|LTR|ERVL-MaLR 73841 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 163.25-52 chr5 14970849 14971133 + 1.25 NA Intergenic Intergenic -99213 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 302-10 chr17 71516967 71517387 + 1.25 NA Intergenic Intergenic -314998 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 221.5-28 chr22 40473639 40473990 + 1.25 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -10374 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 120-24 chr12 125510522 125510625 + 1.25 NA intron (NM_052907, intron 3 of 8) L1ME3Cz|LINE|L1 -111879 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 232.5-42 chr5 133411501 133411707 + 1.25 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 16102 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 149.25-22 chr13 59152605 59152798 + 1.25 NA Intergenic Intergenic -860017 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 149.5-77 chr4 180646869 180647048 + 1.25 NA Intergenic Intergenic 512191 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 125.5-27 chr11 94378266 94378378 + 1.25 NA 3' UTR (NM_001330345, exon 3 of 3) 3' UTR (NM_001330345, exon 3 of 3) 23097 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 231.75-25 chr4 19272136 19272432 + 1.25 NA Intergenic Intergenic -979621 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 192.25-12 chr10 122713006 122713275 + 1.25 NA Intergenic MER5B|DNA|hAT-Charlie -13294 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 184.75-49 chr5 98830099 98830310 + 1.25 NA Intergenic L1PA13|LINE|L1 56541 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 159-39 chr20 36470168 36470348 + 1.25 NA intron (NM_183006, intron 1 of 6) intron (NM_183006, intron 1 of 6) 8463 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 153.75-55 chr3 129591127 129591361 + 1.25 NA intron (NM_015103, intron 1 of 35) MIR|SINE|MIR 15495 NM_015103 23129 Hs.301685 NM_015103 ENSG00000004399 PLXND1 PLEXD1 plexin D1 protein-coding 152.25-61 chr7 87124823 87124984 + 1.25 NA Intergenic Intergenic 27414 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 180.5-44 chr2 153779339 153779650 + 1.25 NA Intergenic Intergenic -92428 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 205.25-34 chr5 106941905 106942154 + 1.25 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 68985 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 255.75-23 chr7 28896875 28897276 + 1.25 NA Intergenic Tigger1|DNA|TcMar-Tigger 61255 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 291.25-6 chr16 72614814 72615167 + 1.25 NA intron (NR_159372, intron 1 of 7) MIR|SINE|MIR 49980 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 229.75-21 chr4 77880527 77880757 + 1.25 NA intron (NM_020236, intron 2 of 8) intron (NM_020236, intron 2 of 8) 17812 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 240.25-23 chr4 111769864 111770204 + 1.25 NA Intergenic FLAM_C|SINE|Alu -375420 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 165.5-22 chr12 120873473 120873706 + 1.25 NA intron (NM_139015, intron 1 of 10) L1MB3|LINE|L1 30769 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 187.5-32 chr2 24502428 24502703 + 1.25 NA intron (NM_001362952, intron 1 of 23) L2c|LINE|L2 10688 NM_001362954 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 143-51 chr3 103046136 103046299 + 1.25 NA Intergenic Intergenic 477899 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 167.25-8 chr1 180776434 180776643 + 1.25 NA intron (NR_137330, intron 2 of 12) Charlie2b|DNA|hAT-Charlie -136359 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 170.5-65 chr5 87299899 87300098 + 1.25 NA intron (NM_022650, intron 1 of 24) intron (NM_022650, intron 1 of 24) 23630 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 191.75-26 chr20 39893884 39894117 + 1.25 NA Intergenic Intergenic -110461 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 197.25-24 chr14 28707105 28707331 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 58101 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 174.5-35 chr18 70680395 70680674 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -29580 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 124 chr1 18319286 18319492 + 1.25 NA intron (NM_032880, intron 3 of 9) MLT1J|LTR|ERVL-MaLR -161541 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 131.75-64 chr5 144169528 144169675 + 1.25 NA intron (NM_001271732, intron 1 of 4) intron (NM_001271732, intron 1 of 4) 1058 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 220.25-44 chr9 127945350 127945638 + 1.25 NA exon (NM_203305, exon 5 of 8) exon (NM_203305, exon 5 of 8) 5220 NM_203305 399665 Hs.535972 NM_203305 ENSG00000167106 FAM102A C9orf132|EEIG1|SYM-3A|bA203J24.7 family with sequence similarity 102 member A protein-coding 241.75-6 chr10 95883821 95884032 + 1.25 NA intron (NR_038444, intron 2 of 5) intron (NR_038444, intron 2 of 5) -24039 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 248-2 chr1 193330741 193331054 + 1.25 NA intron (NR_125789, intron 1 of 3) L1MA8|LINE|L1 26152 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 280.5-27 chr8 135238276 135238605 + 1.25 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 4309 NR_120395 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 145-65 chr8 80710939 80711221 + 1.25 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 163388 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 182.75-33 chr3 193462770 193463051 + 1.25 NA intron (NM_032279, intron 12 of 29) FLAM_C|SINE|Alu -84157 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 197.5-36 chr2 169378711 169379049 + 1.25 NA Intergenic Intergenic -16346 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 177.75-66 chr9 70652204 70652377 + 1.25 NA intron (NM_001366143, intron 9 of 25) L2a|LINE|L2 157794 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 253.75-21 chr8 90513276 90513501 + 1.25 NA Intergenic L1PA11|LINE|L1 92675 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 185.75-5 chr10 51783869 51784044 + 1.25 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -84361 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 128.75-26 chr14 76585609 76585768 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -175780 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 198.5-8 chr10 89111379 89111646 + 1.25 NA Intergenic L1MA7|LINE|L1 -48101 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 207.75-20 chr2 22131180 22131359 + 1.25 NA Intergenic L1MA8|LINE|L1 -405210 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 240.75-18 chr2 105299868 105300140 + 1.25 NA intron (NM_001142621, intron 2 of 11) intron (NM_001142621, intron 2 of 11) 29652 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 160.5-17 chr14 49538955 49539131 + 1.25 NA Intergenic Intergenic 47337 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 196.5-22 chr11 101469369 101469604 + 1.25 NA exon (NM_004621, exon 10 of 13) exon (NM_004621, exon 10 of 13) 50419 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 165.75-23 chr15 43474874 43475108 + 1.25 NA intron (NM_001355001, intron 9 of 28) intron (NM_001355001, intron 9 of 28) 18165 NM_001141979 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 227-35 chr8 91634939 91635190 + 1.25 NA Intergenic L1M6|LINE|L1 382616 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 226.25-3 chr10 60771439 60771751 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -6736 NM_001320918 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 300.25-7 chr2 18910682 18910996 + 1.25 NA Intergenic Intergenic 116132 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 120-4 chr1 58308409 58308636 + 1.25 NA Intergenic Intergenic -57975 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 209.75-43 chr8 108200962 108201223 + 1.25 NA TTS (NM_001568) TTS (NM_001568) 47625 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 223.5-23 chr13 55189374 55189776 + 1.25 NA Intergenic MIR|SINE|MIR 15121 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 219.5-12 chr12 65482700 65483070 + 1.25 NA intron (NR_120431, intron 3 of 3) AluJr|SINE|Alu 74426 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 131-44 chr4 6421514 6421652 + 1.25 NA promoter-TSS (NM_001206996) promoter-TSS (NM_001206996) -465 NM_001206996 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 136.5-97 chr6 71038371 71038512 + 1.25 NA Intergenic MLT1D|LTR|ERVL-MaLR -81381 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 205.5-53 chr7 45389005 45389296 + 1.25 NA Intergenic Intergenic -184990 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 203.75-24 chr2 209714027 209714415 + 1.25 NA intron (NM_001363910, intron 13 of 15) AluSq2|SINE|Alu -57611 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 171-44 chr4 97109871 97110029 + 1.25 NA Intergenic AluY|SINE|Alu -256976 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 183-22 chr14 56820432 56820671 + 1.25 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 7393 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 127-50 chr2 124031152 124031340 + 1.25 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 5959 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 311.75-2 chr10 27895381 27895804 + 1.25 NA intron (NM_001290021, intron 10 of 13) MER3|DNA|hAT-Charlie 86279 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 121.5-93 chr4 149683624 149683768 + 1.25 NA intron (NM_001363507, intron 6 of 13) intron (NM_001363507, intron 6 of 13) 132147 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 246.25-27 chr6 135257175 135257516 + 1.25 NA Intergenic Intergenic 18185 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 224-23 chr4 123340999 123341272 + 1.25 NA Intergenic Intergenic -55660 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 147.75-19 chr14 27034662 27034833 + 1.25 NA Intergenic Intergenic 126105 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 143.5-66 chr3 108725246 108725486 + 1.25 NA Intergenic Intergenic 31917 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 190-44 chr6 130345375 130345570 + 1.25 NA intron (NM_001258275, intron 1 of 13) intron (NM_001258275, intron 1 of 13) 20396 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 222-15 chr15 26195636 26195940 + 1.25 NA Intergenic Intergenic 79975 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 223.5-54 chr4 33220855 33221123 + 1.25 NA Intergenic THE1D|LTR|ERVL-MaLR 818904 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 208.75-15 chr17 72802306 72802582 + 1.25 NA intron (NM_001352692, intron 6 of 9) AluSq2|SINE|Alu -161972 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 254-7 chr15 89807331 89807576 + 1.25 NA intron (NM_001150, intron 1 of 20) AluSg7|SINE|Alu 7399 NM_001150 290 Hs.1239 NM_001150 ENSG00000166825 ANPEP APN|CD13|GP150|LAP1|P150|PEPN alanyl aminopeptidase, membrane protein-coding 254.5-13 chr2 40927156 40927499 + 1.25 NA Intergenic MamRep605|LTR?|LTR? -414892 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 287.25-16 chr6 64223644 64223911 + 1.25 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 416941 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 155.25-19 chr14 51790038 51790210 + 1.25 NA Intergenic L3|LINE|CR1 -70488 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 184-32 chr3 80583583 80583822 + 1.25 NA Intergenic Intergenic -181195 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 150-52 chr3 186414848 186415075 + 1.25 NA Intergenic L2b|LINE|L2 -25384 NR_151709 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 210.25-5 chr10 18236185 18236424 + 1.25 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -24418 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 152-54 chr5 75522699 75522896 + 1.25 NA intron (NM_001345921, intron 1 of 13) Looper|DNA|PiggyBac -10816 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 155.75-22 chr18 63402710 63402870 + 1.25 NA intron (NM_004869, intron 5 of 10) intron (NM_004869, intron 5 of 10) 19686 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 167-67 chr8 118495448 118495746 + 1.25 NA intron (NM_001101676, intron 2 of 4) MIR|SINE|MIR -125404 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 143.25 chr1 17522366 17522612 + 1.25 NA Intergenic MIRc|SINE|MIR -17209 NM_018125 55160 Hs.443460 NM_018125 ENSG00000074964 ARHGEF10L GrinchGEF Rho guanine nucleotide exchange factor 10 like protein-coding 260.5-26 chr4 187423619 187423847 + 1.25 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 53085 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 234.75-37 chr5 35771976 35772349 + 1.25 NA intron (NM_024867, intron 27 of 36) intron (NM_024867, intron 27 of 36) -84729 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 219.5-10 chr12 1513716 1514045 + 1.25 NA Intergenic L1MA4A|LINE|L1 13389 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 165.5-50 chr2 188492802 188492991 + 1.25 NA intron (NM_001252669, intron 4 of 8) HAL1b|LINE|L1 195404 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 208-37 chr5 173826018 173826208 + 1.25 NA Intergenic Intergenic -35171 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 213.5-34 chr3 52164522 52164724 + 1.25 NA Intergenic AluY|SINE|Alu -10200 NM_015426 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 212-20 chr17 66127690 66127891 + 1.25 NA intron (NM_001353129, intron 6 of 26) intron (NM_001353129, intron 6 of 26) 64102 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 206.75-2 chr1 247303636 247303821 + 1.25 NA intron (NM_032752, intron 9 of 9) MLT1B-int|LTR|ERVL-MaLR 28139 NM_032752 84838 Hs.168677 NM_032752 ENSG00000162714 ZNF496 NIZP1|ZFP496|ZKSCAN17|ZSCAN49 zinc finger protein 496 protein-coding 225-27 chr5 4151457 4151769 + 1.25 NA Intergenic MIRb|SINE|MIR 555781 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 161.5-63 chr4 38922756 38922994 + 1.25 NA exon (NM_001350634, exon 7 of 13) exon (NM_001350634, exon 7 of 13) 54843 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 145-28 chr17 33742400 33742533 + 1.25 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -208706 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 325.25-7 chr20 8088116 8088550 + 1.25 NA Intergenic L1ME1|LINE|L1 -43933 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 140.75-4 chr1 119835930 119836118 + 1.25 NA exon (NM_001047980, exon 7 of 8) exon (NM_001047980, exon 7 of 8) 8856 NM_001047980 343505 NM_001047980 NBPF7 - NBPF member 7 protein-coding 162.5 chr1 20650616 20650863 + 1.25 NA non-coding (NR_046507, exon 1 of 3) non-coding (NR_046507, exon 1 of 3) 1454 NR_046507 100861548 Hs.710259 NR_046507 ENSG00000117242 PINK1-AS NAPINK1|PINK1-AS1|PINK1AS PINK1 antisense RNA ncRNA 162.75-57 chr4 127622406 127622581 + 1.25 NA Intergenic Intergenic -10464 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 175.5-73 chr7 66626491 66626707 + 1.25 NA Intergenic L1MA4A|LINE|L1 -2282 NM_153033 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 186.25-59 chr9 87645033 87645262 + 1.25 NA intron (NM_004938, intron 11 of 25) intron (NM_004938, intron 11 of 25) -80972 NM_145918 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 191.5 chr1 41278192 41278374 + 1.25 NA Intergenic Intergenic -35977 NM_001172220 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 293-15 chr4 152615755 152616041 + 1.25 NA Intergenic Intergenic 64099 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 150.25-12 chr10 115194340 115194590 + 1.25 NA intron (NM_207303, intron 8 of 28) L1MA3|LINE|L1 101100 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 155.25-78 chrX 8050322 8050499 + 1.25 NA Intergenic Intergenic -76555 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 270.5-20 chr4 60147907 60148302 + 1.25 NA Intergenic Intergenic -774515 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 251.5-22 chr4 60130837 60131133 + 1.25 NA Intergenic Intergenic -791634 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 165.75-71 chr8 86289771 86289916 + 1.25 NA Intergenic L1PB4|LINE|L1 -52704 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 180.75-7 chr1 76861170 76861363 + 1.25 NA Intergenic L1ME2|LINE|L1 -6214 NM_001320273 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 198-13 chr12 62719410 62719668 + 1.25 NA intron (NM_020700, intron 6 of 9) intron (NM_020700, intron 6 of 9) 115853 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 141.5-12 chr10 30792431 30792697 + 1.25 NA Intergenic Tigger19a|DNA|TcMar-Tigger 69345 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 164-68 chr8 124356161 124356394 + 1.25 NA intron (NM_194291, intron 1 of 6) LTR48B|LTR|ERV1 16422 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 149.75-13 chr13 36439433 36439678 + 1.25 NA intron (NM_001111045, intron 5 of 8) intron (NM_001111045, intron 5 of 8) 7060 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 163-30 chr20 48558807 48559025 + 1.25 NA Intergenic Intergenic 199005 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 163.5-78 chr6 46049694 46049945 + 1.25 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 30529 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 214.5-39 chr4 27915265 27915593 + 1.25 NA Intergenic Intergenic 697950 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 337.75-4 chr14 26414401 26414786 + 1.25 NA Intergenic Intergenic 138837 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 186-58 chr9 132533900 132534214 + 1.25 NA intron (NM_207417, intron 4 of 6) L1MC5a|LINE|L1 -48549 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 184.25-55 chr9 98293622 98293781 + 1.25 NA intron (NM_005458, intron 18 of 18) MIRc|SINE|MIR -38052 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 204.5-6 chr11 66789540 66789875 + 1.25 NA intron (NM_024650, intron 5 of 16) MIRc|SINE|MIR 44938 NM_001302084 79703 Hs.292088 NM_024650 ENSG00000173715 C11orf80 HYDM4|TOP6BL|TOPOVIBL chromosome 11 open reading frame 80 protein-coding 307.5-16 chr8 109068021 109068322 + 1.25 NA Intergenic Intergenic -18457 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 242.5-15 chr2 129131005 129131374 + 1.25 NA Intergenic LOR1-int|LTR|ERV1 142702 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 254.5-28 chr6 61228110 61228568 + 1.25 NA Intergenic Intergenic -345791 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 144.25-37 chr2 20303517 20303728 + 1.25 NA intron (NM_001282790, intron 6 of 18) L1ME4a|LINE|L1 23764 NM_001282790 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 315.5 chr10 47001878 47002256 + 1.25 NA non-coding (NR_148022, exon 3 of 3) non-coding (NR_148022, exon 3 of 3) 90345 NR_148024 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 263.25-14 chr4 180882512 180882754 + 1.25 NA Intergenic Intergenic 276516 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 276.75-20 chr8 75540262 75540651 + 1.25 NA intron (NM_004133, intron 1 of 9) intron (NM_004133, intron 1 of 9) 488 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 143.5-25 chr12 72370426 72370626 + 1.25 NA intron (NM_013381, intron 2 of 18) L2a|LINE|L2 -97017 NR_026836 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 273.5-10 chr17 48143490 48143888 + 1.25 NA intron (NM_001075099, intron 11 of 12) intron (NM_001075099, intron 11 of 12) 12822 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 229-8 chr10 96092048 96092422 + 1.25 NA Intergenic LTR16B2|LTR|ERVL -2000 NR_134321 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 244.75-18 chr5 84577912 84578198 + 1.25 NA Intergenic Intergenic -193175 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 162.25-50 chr9 37217543 37217755 + 1.25 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 97051 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 179.75-14 chr14 32303536 32303777 + 1.25 NA Intergenic MIRb|SINE|MIR -25642 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 217-25 chr6 145998325 145998604 + 1.25 NA Intergenic MER58B|DNA|hAT-Charlie -29243 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 135.25-29 chr14 84050928 84051096 + 1.25 NA Intergenic LTR41C|LTR|ERVL -1220920 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 326.75 chr1 197087604 197087966 + 1.25 NA intron (NM_001206846, intron 25 of 26) L2|LINE|L2 -20518 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 175.75-6 chr13 94051025 94051189 + 1.25 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 136884 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 250.25-2 chr10 89327845 89328215 + 1.25 NA promoter-TSS (NM_001549) promoter-TSS (NM_001549) 33 NM_001549 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 217.5-36 chr5 121303080 121303387 + 1.25 NA Intergenic Intergenic -19317 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 266.5-21 chr6 165153868 165154193 + 1.25 NA Intergenic L1MC4|LINE|L1 155575 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 144.25-56 chr4 103604767 103604923 + 1.25 NA intron (NM_001059, intron 3 of 4) L1PA3|LINE|L1 115140 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 117-7 chr1 221184877 221185067 + 1.25 NA Intergenic Intergenic 151324 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 156.5-2 chr1 96453503 96453689 + 1.25 NA Intergenic Intergenic -79471 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 144.5-18 chr11 22173432 22173613 + 1.25 NA Intergenic L1MC3|LINE|L1 -19563 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 212-21 chr17 77662411 77662776 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR 65966 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 170.5-84 chr8 127969348 127969548 + 1.25 NA intron (NR_003367, intron 3 of 8) intron (NR_003367, intron 3 of 8) 8815 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 236.25-27 chr3 186986099 186986360 + 1.25 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -35626 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 281.25 chr1 85412666 85413049 + 1.25 NA intron (NM_001134445, intron 2 of 6) AluJo|SINE|Alu -8351 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 145.25-37 chr18 62420556 62420839 + 1.25 NA Intergenic L3|LINE|CR1 95387 NM_003839 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 133-22 chr14 97832616 97832798 + 1.25 NA Intergenic Intergenic -69876 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 231.25-16 chr18 8693290 8693525 + 1.25 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat 14214 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 162.5-3 chr1 98197589 98197930 + 1.25 NA Intergenic Intergenic -12952 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 117.25-80 chr6 68175651 68175775 + 1.25 NA Intergenic Intergenic 120362 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 276.75-7 chr14 38751150 38751612 + 1.25 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -131215 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 249-36 chr7 3511432 3511678 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 210303 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 174.5-27 chr14 72439338 72439587 + 1.25 NA intron (NM_001370288, intron 3 of 16) MIRc|SINE|MIR -77358 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 168-37 chr2 15377726 15377997 + 1.25 NA intron (NR_052013, intron 30 of 50) intron (NR_052013, intron 30 of 50) 183473 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 303-7 chr21 27691260 27691714 + 1.25 NA Intergenic Intergenic -30892 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 157.5-22 chr14 21121919 21122104 + 1.25 NA Intergenic Charlie1|DNA|hAT-Charlie -17307 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 138-56 chr5 35479667 35479831 + 1.25 NA Intergenic Intergenic -138114 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 227-10 chr14 30034412 30034740 + 1.25 NA Intergenic Intergenic -106729 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 165-5 chr10 12919855 12920030 + 1.25 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 81771 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 151-62 chr6 159260307 159260449 + 1.25 NA intron (NM_032532, intron 18 of 22) intron (NM_032532, intron 18 of 22) -90371 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 130.25-71 chr5 26924191 26924455 + 1.25 NA intron (NM_016279, intron 2 of 11) L1M1|LINE|L1 114263 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 243.5-12 chr2 102409775 102410021 + 1.25 NA Intergenic LTR25-int|LTR|ERV1 -8892 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 234-12 chr11 13291185 13291566 + 1.25 NA intron (NM_001351822, intron 1 of 18) intron (NM_001351822, intron 1 of 18) 13648 NM_001351811 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 145-43 chr21 21199707 21199951 + 1.25 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 52667 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 196-28 chr4 35453874 35454109 + 1.25 NA Intergenic Intergenic 789948 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 132.75-3 chr1 59941766 59941947 + 1.25 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15058 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 247.75-22 chr6 25446612 25446964 + 1.25 NA intron (NM_001173977, intron 5 of 36) Tigger1|DNA|TcMar-Tigger 167414 NM_017640 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 321.25 chr10 107789285 107789605 + 1.25 NA Intergenic Intergenic 279848 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 188.75-52 chr8 122857462 122857745 + 1.25 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 75948 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 245.25-26 chr8 40564471 40564856 + 1.25 NA intron (NM_024645, intron 6 of 6) intron (NM_024645, intron 6 of 6) -221300 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 170-20 chr2 61524180 61524436 + 1.25 NA intron (NM_003400, intron 3 of 24) intron (NM_003400, intron 3 of 24) 14048 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 139.5-69 chr4 89222833 89223013 + 1.25 NA Intergenic L1MB7|LINE|L1 84877 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 255-25 chr8 13549321 13549633 + 1.25 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -17392 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 198.5-10 chr11 101078029 101078309 + 1.25 NA intron (NR_073142, intron 2 of 6) intron (NR_073142, intron 2 of 6) 50894 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 186-35 chr4 33616529 33616696 + 1.25 NA Intergenic LTR82B|LTR|ERVL 423281 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 125.25-47 chr20 55109006 55109183 + 1.25 NA Intergenic L1MCa|LINE|L1 -313949 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 147.25-42 chr3 95707424 95707594 + 1.25 NA Intergenic Intergenic -24316 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 173.25-2 chr1 85920090 85920345 + 1.25 NA intron (NM_152890, intron 24 of 59) L2c|LINE|L2 -211784 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 134.25-95 chr8 76921667 76921936 + 1.25 NA Intergenic AluSx1|SINE|Alu 45049 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 175-21 chr2 14791308 14791456 + 1.25 NA Intergenic Intergenic 158665 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 205.75-27 chr3 3256949 3257155 + 1.25 NA Intergenic L1ME1|LINE|L1 -77335 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 121.25-64 chr6 70906642 70906845 + 1.25 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 50317 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 224.5-17 chr17 68790227 68790479 + 1.25 NA Intergenic LTR78B|LTR|ERV1 162199 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 244-25 chr7 53192118 53192473 + 1.25 NA Intergenic Intergenic 156662 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 152-15 chr11 67153453 67153675 + 1.25 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 34301 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 327.5-11 chr8 43651236 43651520 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 358936 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 260.75-19 chr7 9080388 9080682 + 1.25 NA Intergenic L1MC1|LINE|L1 -553735 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 293.5-20 chr5 90969610 90969980 + 1.25 NA intron (NR_003149, intron 84 of 89) L1PA5|LINE|L1 344607 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 289.25-6 chr12 21158659 21159078 + 1.25 NA intron (NM_006446, intron 2 of 14) BLACKJACK|DNA|hAT-Blackjack 27674 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 129.75-76 chr7 125099885 125100087 + 1.25 NA intron (NR_125719, intron 5 of 7) intron (NR_125719, intron 5 of 7) -84583 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 194.75-21 chr2 109716437 109716737 + 1.25 NA Intergenic AluJb|SINE|Alu -76171 NM_032260 84220 Hs.469630 NM_005054 ENSG00000015568 RGPD5 BS-63|BS63|HEL161|RGP5 RANBP2 like and GRIP domain containing 5 protein-coding 164.75-11 chr10 78426579 78426877 + 1.25 NA Intergenic L1MEc|LINE|L1 159386 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 185-33 chr4 113122097 113122306 + 1.25 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) 5504 NM_001354237 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 147.25-69 chr9 97502554 97502714 + 1.25 NA intron (NM_003275, intron 1 of 9) CpG 968 NM_003275 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 205-8 chr10 117809280 117809491 + 1.25 NA Intergenic L1MC4|LINE|L1 -237436 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 149-4 chr1 195401126 195401374 + 1.25 NA Intergenic L2|LINE|L2 687465 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 222.75-3 chr1 73176999 73177357 + 1.25 NA Intergenic MER21C|LTR|ERVL -128992 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 226.75-9 chr16 83188945 83189216 + 1.25 NA intron (NM_001220490, intron 3 of 12) Tigger20a|DNA|TcMar-Tigger -198782 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 179.5-17 chr10 96242405 96242565 + 1.25 NA intron (NM_013314, intron 3 of 16) L2b|LINE|L2 29031 NR_047680 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 168.5-38 chr18 25726181 25726437 + 1.25 NA Intergenic Intergenic 364304 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 231.25-22 chr22 37764349 37764604 + 1.25 NA intron (NM_001039141, intron 17 of 23) L1ME4b|LINE|L1 18242 NM_138632 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 225.25-5 chr13 103394614 103394889 + 1.25 NA Intergenic Intergenic -30449 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 220.25-24 chr2 203114662 203114854 + 1.25 NA intron (NM_001114132, intron 16 of 54) AluSz6|SINE|Alu 99879 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 226.5-56 chrX 94802787 94803176 + 1.25 NA Intergenic Tigger6b|DNA|TcMar-Tigger 260245 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 310.5-12 chr5 84743294 84743629 + 1.25 NA Intergenic L1MA2|LINE|L1 -358581 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 215.25-33 chr6 112274614 112274896 + 1.25 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) -20040 NM_001105208 3910 Hs.654572 NM_002290 ENSG00000112769 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin subunit alpha 4 protein-coding 246.5-20 chr6 41919929 41920256 + 1.25 NA intron (NR_131160, intron 1 of 2) intron (NR_131160, intron 1 of 2) 851 NM_001305456 9477 Hs.278434 NM_004275 ENSG00000124641 MED20 PRO0213|SRB2|TRFP mediator complex subunit 20 protein-coding 230.75-9 chr18 4264329 4264593 + 1.25 NA promoter-TSS (NR_036489) promoter-TSS (NR_036489) -141 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 268-15 chr20 46861385 46861801 + 1.25 NA Intergenic L1ME2|LINE|L1 -33031 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 173.25-30 chr2 76803261 76803425 + 1.25 NA intron (NR_146416, intron 1 of 1) L1M2|LINE|L1 -182622 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 226.75-11 chr18 69640381 69640690 + 1.25 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 170604 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 212.5-26 chr2 85541253 85541442 + 1.25 NA exon (NM_005911, exon 3 of 9) exon (NM_005911, exon 3 of 9) 2179 NM_005911 4144 Hs.516157 NM_005911 ENSG00000168906 MAT2A MATA2|MATII|SAMS2 methionine adenosyltransferase 2A protein-coding 209.75-5 chr11 96283442 96283643 + 1.25 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -57896 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 276 chr1 101983747 101984057 + 1.25 NA intron (NR_110210, intron 1 of 7) intron (NR_110210, intron 1 of 7) 13332 NM_058170 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 180.75-56 chr7 6703518 6703766 + 1.25 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 3305 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 196.25-33 chr2 99529012 99529327 + 1.25 NA Intergenic Intergenic -39152 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 226.5-34 chr20 29277247 29277489 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 139593 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 172.25-55 chr4 71382110 71382341 + 1.25 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 43172 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 184.25-37 chr5 12582337 12582645 + 1.25 NA intron (NR_033383, intron 1 of 3) intron (NR_033383, intron 1 of 3) 7634 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 166.5-96 chr8 66802982 66803127 + 1.25 NA intron (NM_001204173, intron 5 of 18) L1MC5|LINE|L1 27849 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 157.75-31 chr16 80237408 80237672 + 1.25 NA intron (NR_120307, intron 2 of 5) L1MEf|LINE|L1 -303194 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 184-43 chr5 27934743 27934981 + 1.25 NA Intergenic Intergenic 352803 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 158.25-27 chr20 31924783 31924999 + 1.25 NA intron (NR_148013, intron 8 of 16) L2a|LINE|L2 27155 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 193.75-33 chr22 46799346 46799582 + 1.25 NA intron (NM_001284305, intron 4 of 12) L1MC4|LINE|L1 25537 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 168.25-16 chr12 122883195 122883390 + 1.25 NA intron (NM_024667, intron 1 of 3) intron (NM_024667, intron 1 of 3) 12832 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 207.75-16 chr16 58227246 58227527 + 1.25 NA Intergenic Intergenic -22550 NM_001142302 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 289.5-17 chr20 59059053 59059422 + 1.25 NA Intergenic Intergenic -16391 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 243.75-4 chr10 91422370 91422692 + 1.25 NA intron (NM_182765, intron 1 of 20) intron (NM_182765, intron 1 of 20) 12246 NM_001284274 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 219.5-5 chr10 92464176 92464483 + 1.25 NA intron (NR_136399, intron 21 of 25) intron (NR_136399, intron 21 of 25) 33432 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 155.5-11 chr1 153578059 153578328 + 1.25 NA Intergenic Intergenic -12349 NM_001366407 6273 Hs.516484 NM_005978 ENSG00000196754 S100A2 CAN19|S100L S100 calcium binding protein A2 protein-coding 244.75-23 chr6 129513360 129513649 + 1.25 NA intron (NM_000426, intron 63 of 64) intron (NM_000426, intron 63 of 64) 196673 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 147.75-30 chr16 7074216 7074406 + 1.25 NA intron (NM_018723, intron 4 of 15) L1MEf|LINE|L1 -258534 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 264.25-8 chr22 36902256 36902484 + 1.25 NA Intergenic L1MEd|LINE|L1 -11258 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 150.75-6 chr11 45206689 45206838 + 1.25 NA intron (NM_001256695, intron 5 of 7) MER5B|DNA|hAT-Charlie 59420 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 185.5-55 chr4 116120859 116121107 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR -178742 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 218-12 chr14 41704693 41705028 + 1.25 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 98004 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 192.75-12 chr15 62765205 62765441 + 1.25 NA intron (NM_015059, intron 37 of 55) (T)n|Simple_repeat|Simple_repeat -58634 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 250.5-14 chr16 48349290 48349652 + 1.25 NA intron (NM_031490, intron 14 of 14) intron (NM_031490, intron 14 of 14) 16416 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 143.75-60 chr3 14095406 14095562 + 1.25 NA Intergenic Intergenic 29386 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 168.75-9 chr12 112974117 112974267 + 1.25 NA TTS (NM_006187) TTS (NM_006187) -4327 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 259.25-13 chr8 117815061 117815314 + 1.25 NA intron (NM_000127, intron 7 of 10) intron (NM_000127, intron 7 of 10) 105726 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 179.25 chr1 113810920 113811175 + 1.25 NA intron (NR_130896, intron 1 of 7) intron (NR_130896, intron 1 of 7) 1429 NR_130896 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 159-65 chr8 134414423 134414560 + 1.25 NA Intergenic L1MEh|LINE|L1 -183580 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 195.25-5 chr1 188042406 188042660 + 1.25 NA Intergenic Intergenic 598905 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 299.25-6 chr21 45401304 45401636 + 1.25 NA Intergenic L1MEc|LINE|L1 -3695 NM_130445 80781 Hs.517356 NM_030582 ENSG00000182871 COL18A1 KNO|KNO1|KS collagen type XVIII alpha 1 chain protein-coding 263.5-33 chr7 114311903 114312183 + 1.25 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -102772 NM_148898 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 116-25 chr15 89000574 89000683 + 1.25 NA Intergenic LTR62|LTR|ERVL -87249 NM_001310320 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 139.75-67 chr7 108845084 108845247 + 1.25 NA Intergenic Intergenic 39422 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 146.25-71 chr8 52143894 52144181 + 1.25 NA intron (NM_001352876, intron 14 of 23) intron (NM_001352876, intron 14 of 23) -50325 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 213.75-52 chr8 135360362 135360669 + 1.25 NA Intergenic Intergenic -96941 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 258.75-16 chr16 77358054 77358487 + 1.25 NA intron (NM_199355, intron 8 of 22) intron (NM_199355, intron 8 of 22) 76764 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 210.75-36 chr6 105393704 105393992 + 1.25 NA intron (NM_002726, intron 2 of 14) intron (NM_002726, intron 2 of 14) 9234 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 132-41 chr2 194630702 194630858 + 1.25 NA Intergenic L1ME3|LINE|L1 -99815 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 187.25-56 chr5 134026718 134026917 + 1.25 NA Intergenic Intergenic -21842 NM_003374 7416 Hs.519320 NM_003374 ENSG00000213585 VDAC1 PORIN|VDAC-1 voltage dependent anion channel 1 protein-coding 220.25-25 chr20 36166632 36166983 + 1.25 NA intron (NM_012156, intron 1 of 21) AluSx|SINE|Alu -11047 NR_147703 100130373 Hs.570339 NR_147703 LOC100130373 - uncharacterized LOC100130373 ncRNA 193.25-51 chr9 32505544 32505722 + 1.25 NA intron (NM_014314, intron 1 of 17) intron (NM_014314, intron 1 of 17) 20563 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 205.5-21 chr17 10795554 10795747 + 1.25 NA non-coding (NR_036581, exon 2 of 2) non-coding (NR_036581, exon 2 of 2) 8449 NR_036581 100289255 Hs.306721 NR_036581 ENSG00000263429 TMEM238L LINC00675 transmembrane protein 238 like ncRNA 291.75-9 chr2 64484593 64485017 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR -1548 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 184-8 chr10 39117974 39118151 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 421466 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 274.5-18 chr2 89836233 89836628 + 1.25 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198523 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 161-66 chr8 101883343 101883527 + 1.25 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -92466 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 198.75-34 chr4 115129045 115129237 + 1.25 NA Intergenic Intergenic -15521 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 235.5-21 chr16 10655059 10655402 + 1.25 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 39700 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 224.5-10 chr10 78024832 78025027 + 1.25 NA intron (NM_007055, intron 4 of 30) intron (NM_007055, intron 4 of 30) 4586 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 271.75-12 chr6 147646388 147646618 + 1.25 NA Intergenic Intergenic 137813 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 232.25-22 chr5 33082322 33082649 + 1.25 NA Intergenic Intergenic 135042 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 209.5-35 chr5 4558736 4559025 + 1.25 NA Intergenic Intergenic -214601 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 221.75-8 chr17 47594023 47594253 + 1.25 NA intron (NM_001330257, intron 13 of 23) AluJb|SINE|Alu -55781 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 278.5-10 chr14 67521360 67521800 + 1.25 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -6095 NM_001348549 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 125-46 chr18 6084434 6084551 + 1.25 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -172252 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 172.75 chr1 9946995 9947293 + 1.25 NA intron (NM_001297779, intron 1 of 4) L2|LINE|L2 3669 NM_001297779 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 209.75-11 chr15 35446603 35446872 + 1.25 NA intron (NM_080650, intron 5 of 8) Tigger2b_Pri|DNA|TcMar-Tigger -74373 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 170.5 chr1 5700788 5701027 + 1.25 NA Intergenic L1MA9|LINE|L1 161834 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 169.5-83 chr8 85960730 85960905 + 1.25 NA Intergenic Intergenic 108851 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 146-44 chr5 18274205 18274380 + 1.25 NA Intergenic Intergenic 467018 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 218.5-8 chr10 107275822 107276149 + 1.25 NA Intergenic L2c|LINE|L2 -111279 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 132.25-93 chr9 115887131 115887280 + 1.25 NA TTS (NR_024032) TTS (NR_024032) 38002 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 120.5-102 chr7 93191582 93191777 + 1.25 NA intron (NM_001346642, intron 9 of 9) intron (NM_001346642, intron 9 of 9) 27892 NM_198151 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 277.75-7 chr12 110537530 110537953 + 1.25 NA intron (NR_138550, intron 4 of 4) intron (NR_138550, intron 4 of 4) 35410 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 275.75-21 chr7 83249924 83250220 + 1.25 NA Intergenic Charlie1a|DNA|hAT-Charlie -87188 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 139.5-4 chr1 106206074 106206275 + 1.25 NA Intergenic Intergenic -177921 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 247.75-26 chr8 121807513 121807913 + 1.25 NA Intergenic Intergenic -166273 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 151.5-91 chr9 113994650 113994818 + 1.25 NA intron (NM_001318041, intron 3 of 13) intron (NM_001318041, intron 3 of 13) 83566 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 131-6 chr1 188817642 188817864 + 1.25 NA Intergenic Intergenic 1374125 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 135.25-43 chr2 50061927 50062199 + 1.25 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -87860 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 138.25-65 chr4 39196419 39196577 + 1.25 NA intron (NM_025132, intron 5 of 36) L2|LINE|L2 13969 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 205.5-25 chr2 60059477 60059775 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie 323410 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 227-27 chr5 172486039 172486301 + 1.25 NA Intergenic Intergenic -31645 NM_001017995 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 172.25-51 chr3 192712747 192713019 + 1.25 NA intron (NM_004113, intron 2 of 5) HAL1|LINE|L1 14658 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 218.25-17 chr14 54417065 54417290 + 1.25 NA intron (NM_001330173, intron 6 of 8) L1MB7|LINE|L1 20170 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 218.5 chr1 40378080 40378413 + 1.25 NA intron (NM_001198978, intron 1 of 9) FRAM|SINE|Alu 3613 NM_001198978 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 315-10 chr20 55692965 55693438 + 1.25 NA Intergenic Intergenic -266004 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 236.25-39 chr7 109458046 109458397 + 1.25 NA Intergenic Intergenic 501992 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 300.5-4 chr14 74083203 74083612 + 1.25 NA intron (NM_001278593, intron 1 of 11) intron (NM_001278593, intron 1 of 11) 1046 NM_001278594 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 125-31 chr15 74727516 74727717 + 1.25 NA Intergenic AluSx|SINE|Alu -2088 NM_001319217 1543 Hs.72912 NM_000499 ENSG00000140465 CYP1A1 AHH|AHRR|CP11|CYP1|CYPIA1|P1-450|P450-C|P450DX cytochrome P450 family 1 subfamily A member 1 protein-coding 238-24 chr3 57123947 57124230 + 1.25 NA intron (NM_001318864, intron 2 of 13) intron (NM_001318864, intron 2 of 13) 41265 NM_017563 54756 Hs.150725 NM_017563 ENSG00000144730 IL17RD HH18|IL-17RD|IL17RLM|SEF interleukin 17 receptor D protein-coding 203-29 chr5 99269453 99269844 + 1.25 NA Intergenic L1M3d|LINE|L1 -264342 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 328.25-5 chr14 42939493 42939915 + 1.25 NA Intergenic MIR3|SINE|MIR 1332848 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 190.5-57 chr4 102521763 102522056 + 1.25 NA intron (NM_001319226, intron 1 of 23) intron (NM_001319226, intron 1 of 23) -19423 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 190.75-56 chrX 93791979 93792276 + 1.25 NA Intergenic Intergenic 117921 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 166-22 chr14 63614443 63614674 + 1.25 NA intron (NM_080666, intron 2 of 2) intron (NM_080666, intron 2 of 2) 27313 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 228.75-20 chr18 60864063 60864404 + 1.25 NA Intergenic Charlie21a|DNA|hAT-Charlie -469197 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 210.25-39 chr5 148705175 148705475 + 1.25 NA Intergenic L1PB1|LINE|L1 -50798 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 150.75-75 chr8 140407804 140407961 + 1.25 NA intron (NM_001321646, intron 4 of 21) AluSx1|SINE|Alu 49862 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 114.75-90 chr6 136105351 136105481 + 1.25 NA intron (NM_018945, intron 2 of 12) MIR|SINE|MIR -32589 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 129.5-84 chr7 1689387 1689564 + 1.25 NA intron (NM_001128636, intron 1 of 2) intron (NM_001128636, intron 1 of 2) 1356 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 180-9 chr1 147249247 147249462 + 1.25 NA intron (NM_001348452, intron 1 of 22) L1MD1|LINE|L1 6212 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 227.25-12 chr12 43273751 43274005 + 1.25 NA Intergenic Intergenic 118563 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 239.25-22 chr5 29662957 29663187 + 1.25 NA Intergenic Intergenic -217488 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 139-34 chr2 107825354 107825525 + 1.25 NA intron (NR_024439, intron 2 of 2) intron (NR_024439, intron 2 of 2) 1330 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 118.75-90 chr6 18436420 18436541 + 1.25 NA intron (NM_182757, intron 3 of 7) L1MC4a|LINE|L1 49130 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 187.25-29 chr2 31420481 31420835 + 1.25 NA Intergenic L1M1|LINE|L1 -5916 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 469.5-2 chr14 51133946 51134343 + 1.25 NA Intergenic L1PA8A|LINE|L1 -38440 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 179-18 chr13 50169264 50169481 + 1.25 NA intron (NR_109974, intron 2 of 6) L2a|LINE|L2 -2646 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 147.5-62 chr3 191218621 191218834 + 1.25 NA intron (NR_133663, intron 4 of 5) intron (NR_133663, intron 4 of 5) 15878 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 347.25-5 chr20 46976689 46977060 + 1.25 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 82031 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 146-19 chr17 11274253 11274489 + 1.25 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 32948 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 159.75-4 chr1 78960102 78960307 + 1.25 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 46526 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 234.75-35 chr5 4526250 4526544 + 1.25 NA Intergenic Intergenic -247084 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 253.5-44 chr8 70610204 70610443 + 1.25 NA intron (NR_038881, intron 1 of 3) MER2|DNA|TcMar-Tigger 1746 NR_038881 286190 Hs.662204 NR_038881 ENSG00000246366 LACTB2-AS1 - LACTB2 antisense RNA 1 ncRNA 131-3 chr1 48760872 48761021 + 1.25 NA intron (NR_146232, intron 2 of 4) intron (NR_146232, intron 2 of 4) 15945 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 260.5-21 chr2_KI270772v1_alt 5503 5905 + 1.25 NA NA Intergenic NA NA 146.5-66 chr4 30765438 30765631 + 1.25 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 45165 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 116.25-87 chr7 135472672 135472801 + 1.25 NA intron (NM_013316, intron 1 of 10) intron (NM_013316, intron 1 of 10) 37366 NM_001190849 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 194.75-46 chr8 54974697 54974885 + 1.25 NA Intergenic Intergenic -127237 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 170.5-72 chr6 42160244 42160447 + 1.25 NA intron (NM_001319062, intron 1 of 4) intron (NM_001319062, intron 1 of 4) 4939 NM_001370581 114841037 Hs.92858 NM_001370581 LOC114841037 - Uncharacterized protein 114841037 protein-coding 124-45 chr4 100709487 100709599 + 1.25 NA Intergenic Intergenic -34430 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 134.25-23 chr15 23902982 23903153 + 1.25 NA Intergenic L1MC3|LINE|L1 -72080 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 186.5-13 chr11 65068549 65068738 + 1.25 NA Intergenic Intergenic -10090 NM_005468 10004 Hs.13967 NM_005468 ENSG00000168060 NAALADL1 I100|NAALADASEL N-acetylated alpha-linked acidic dipeptidase like 1 protein-coding 119.25-9 chr10 49317798 49317992 + 1.25 NA intron (NM_001135196, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 18725 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 241.75-18 chr22 28057739 28058058 + 1.25 NA intron (NM_001145418, intron 12 of 22) L1ME2z|LINE|L1 -137286 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 156.5-52 chr4 63404282 63404455 + 1.25 NA Intergenic Intergenic 1005082 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 179.25-45 chr7 32461585 32461936 + 1.25 NA Intergenic LTR16C|LTR|ERVL -3266 NR_038454 100130673 Hs.609282 NR_038454 LOC100130673 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo 190-6 chr11 25346165 25346391 + 1.25 NA Intergenic L1PA15|LINE|L1 -842845 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 190-55 chr9 76728792 76729076 + 1.25 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -35502 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 251-13 chr16 78899214 78899535 + 1.25 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 701363 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 131.75-86 chr9 75931593 75931753 + 1.25 NA intron (NR_120409, intron 1 of 19) intron (NR_120409, intron 1 of 19) 41000 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 358-5 chr4 53602932 53603242 + 1.25 NA intron (NR_046827, intron 1 of 1) intron (NR_046827, intron 1 of 1) 10131 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 203.5-45 chr5 161533295 161533526 + 1.25 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 14714 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 137.5-76 chr3 46854100 46854323 + 1.25 NA Intergenic Intergenic 9272 NM_000258 4634 Hs.517939 NM_000258 ENSG00000160808 MYL3 CMH8|MLC-lV/sb|MLC1SB|MLC1V|VLC1|VLCl myosin light chain 3 protein-coding 166-40 chr3 38434363 38434594 + 1.25 NA Intergenic L1MA4A|LINE|L1 -19412 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 168-52 chr5 16591103 16591369 + 1.25 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -24690 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 150.5-77 chr6 23588537 23588810 + 1.25 NA Intergenic Intergenic -537542 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 222.25-4 chr1 219869813 219870114 + 1.25 NA Intergenic ERVL-E-int|LTR|ERVL 58688 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 124.75-20 chr12 30490248 30490401 + 1.25 NA Intergenic Intergenic 186920 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 190.25-28 chr21 20426408 20426577 + 1.25 NA Intergenic Intergenic -167807 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 147.75-85 chr8 135065489 135065667 + 1.25 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -168553 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 252.25-5 chr14 50402877 50403131 + 1.25 NA Intergenic Intergenic -5706 NM_001282236 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 184.25-49 chr7 78625691 78625934 + 1.25 NA intron (NM_001301128, intron 3 of 20) Tigger3|DNA|TcMar-Tigger 278570 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 245-38 chr8 141543079 141543297 + 1.25 NA Intergenic MLT1C|LTR|ERVL-MaLR -35958 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 245-4 chr1 201773424 201773647 + 1.25 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 33635 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 165.25-3 chr1 88837713 88837914 + 1.25 NA Intergenic L1ME3F|LINE|L1 53754 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 123.5-109 chr8 90084923 90085192 + 1.25 NA Intergenic Intergenic -2178 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 179-53 chr6 133977130 133977310 + 1.25 NA intron (NM_004865, intron 1 of 6) intron (NM_004865, intron 1 of 6) 23996 NM_004865 9519 Hs.486507 NM_004865 ENSG00000028839 TBPL1 MGC:8389|MGC:9620|STUD|TLF|TLP|TRF2 TATA-box binding protein like 1 protein-coding 193-17 chr14 28790572 28790837 + 1.25 NA intron (NR_026731, intron 2 of 2) AluJb|SINE|Alu -4917 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 151.25-47 chr5 96821959 96822177 + 1.25 NA Intergenic Intergenic -7923 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 252.5-13 chr17 41180670 41181036 + 1.25 NA Intergenic Intergenic -2632 NM_033062 85291 Hs.380165 NM_033062 ENSG00000244537 KRTAP4-2 KAP4.2|KRTAP4.2 keratin associated protein 4-2 protein-coding 251.5-25 chr4 132333319 132333617 + 1.25 NA Intergenic Intergenic -257621 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 120.75-87 chr6 75194409 75194544 + 1.25 NA intron (NM_004370, intron 3 of 65) intron (NM_004370, intron 3 of 65) 11577 NM_004370 1303 Hs.101302 NM_004370 ENSG00000111799 COL12A1 BA209D8.1|BTHLM2|COL12A1L|DJ234P15.1|EDSMYP|UCMD2 collagen type XII alpha 1 chain protein-coding 113.5-47 chr16 50555799 50555924 + 1.25 NA intron (NM_033119, intron 3 of 9) intron (NM_033119, intron 3 of 9) 7465 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 304.25-14 chr7 12423638 12423890 + 1.25 NA Intergenic Intergenic -19823 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 150-74 chr8 75472401 75472634 + 1.25 NA intron (NM_001330561, intron 1 of 11) MIR3|SINE|MIR 64868 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 121-7 chr1 116381070 116381220 + 1.25 NA intron (NM_001160233, intron 1 of 22) intron (NM_001160233, intron 1 of 22) -2225 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 384-4 chr4 63804589 63804992 + 1.25 NA Intergenic Intergenic 604660 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 281.5-10 chr22 40832623 40833178 + 1.25 NA intron (NM_003932, intron 7 of 11) intron (NM_003932, intron 7 of 11) -13501 NR_104236 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 259.5-24 chr7 3418455 3418687 + 1.25 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 117319 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 184.25-34 chr4 7738780 7738991 + 1.25 NA intron (NM_020777, intron 26 of 26) intron (NM_020777, intron 26 of 26) -15205 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 194.5-32 chr2 74365069 74365308 + 1.25 NA exon (NM_001190836, exon 23 of 28) exon (NM_001190836, exon 23 of 28) 9547 NM_001135041 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 131.75-39 chr18 60980758 60980893 + 1.25 NA Intergenic AluJb|SINE|Alu -352605 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 157-32 chr20 16384277 16384432 + 1.25 NA intron (NM_001199866, intron 17 of 22) L2b|LINE|L2 189094 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 209.25-3 chr11 84817491 84817743 + 1.25 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -96675 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 194.5-36 chr2 190013737 190013994 + 1.25 NA Intergenic L1MA7|LINE|L1 48864 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 162-51 chr6 96218176 96218423 + 1.25 NA Intergenic Intergenic 202325 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 172.25-25 chr16 7510988 7511135 + 1.25 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 178216 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 214.25-11 chr12 59669711 59669982 + 1.25 NA intron (NM_001270622, intron 2 of 5) MIRc|SINE|MIR -19524 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 185.25-15 chr14 50137232 50137513 + 1.25 NA intron (NM_006939, intron 18 of 22) intron (NM_006939, intron 18 of 22) -20800 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 187.25 chr1 62151936 62152172 + 1.25 NA intron (NM_176877, intron 42 of 42) intron (NM_176877, intron 42 of 42) -42795 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 192-17 chr15 58009752 58009971 + 1.25 NA intron (NM_170696, intron 4 of 11) MIR|SINE|MIR 4162 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 134.75-71 chr8 61617532 61617678 + 1.25 NA intron (NM_004318, intron 14 of 24) HAL1|LINE|L1 72206 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 272.75-12 chr2 185106071 185106454 + 1.25 NA Intergenic L1PA16|LINE|L1 60810 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 253.5-26 chr2 166709467 166709788 + 1.25 NA Intergenic L1MB1|LINE|L1 -178860 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 238.25-17 chr20 46026458 46026755 + 1.25 NA intron (NM_001134771, intron 1 of 25) intron (NM_001134771, intron 1 of 25) -2609 NM_020708 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 221-39 chr5 134159251 134159470 + 1.25 NA intron (NM_006930, intron 4 of 4) L1MD|LINE|L1 17590 NM_170679 6500 Hs.171626 NM_006930 ENSG00000113558 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase associated protein 1 protein-coding 154.75-57 chr6 146327047 146327321 + 1.25 NA intron (NM_001278065, intron 4 of 9) L1MC3|LINE|L1 -216649 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 142 chr1 41933230 41933371 + 1.25 NA intron (NR_038261, intron 1 of 3) L1MEc|LINE|L1 -14378 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 116.75-53 chr4 15117007 15117174 + 1.25 NA intron (NR_125911, intron 2 of 5) Zaphod3|DNA|hAT-Tip100 114609 NM_182646 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 158.75-60 chr5 130229698 130229973 + 1.25 NA Intergenic THE1B|LTR|ERVL-MaLR 325370 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 177-28 chr2 149623520 149623747 + 1.25 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -35858 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 134.25-13 chr11 102987651 102987799 + 1.25 NA Intergenic Intergenic -31993 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 312-8 chr22 27245049 27245341 + 1.25 NA Intergenic Intergenic -20516 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 351.5-7 chr8 121493138 121493474 + 1.25 NA Intergenic Intergenic -146040 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 143.25-72 chr8 52754340 52754524 + 1.25 NA Intergenic MER65-int|LTR|ERV1 -39966 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 281-3 chr10 83287084 83287428 + 1.25 NA Intergenic L2|LINE|L2 389833 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 259-22 chr3 123943657 123943902 + 1.25 NA intron (NM_001366336, intron 5 of 8) MER21A|LTR|ERVL 17450 NM_001366335 64770 Hs.645028 NM_022757 ENSG00000175455 CCDC14 - coiled-coil domain containing 14 protein-coding 183.25-14 chr14 42688384 42688644 + 1.25 NA Intergenic THE1C|LTR|ERVL-MaLR 1081658 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 124.25-26 chr13 58635321 58635447 + 1.25 NA Intergenic Intergenic -402267 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 172.75-49 chr8 133220330 133220544 + 1.25 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 29398 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 156.5-12 chr12 26214821 26215082 + 1.25 NA intron (NM_005086, intron 1 of 2) intron (NM_005086, intron 1 of 2) 19378 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 225.5-26 chr2 62788215 62788580 + 1.25 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 81500 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 167.25-71 chr6 145714086 145714375 + 1.25 NA intron (NM_001360064, intron 1 of 3) MER2B|DNA|TcMar-Tigger -20639 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 167.25 chr1 10169246 10169714 + 1.25 NA intron (NM_006048, intron 23 of 26) intron (NM_006048, intron 23 of 26) -41090 NM_001365951 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 193.75-5 chr10 16973049 16973371 + 1.25 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) -155756 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 126.5-16 chr10 69547463 69547612 + 1.25 NA Intergenic Intergenic 25885 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 295.25-12 chr5 138768731 138769075 + 1.25 NA intron (NM_001323982, intron 2 of 18) intron (NM_001323982, intron 2 of 18) -14979 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 195-54 chr7 37421499 37421806 + 1.25 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 27300 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 120.25-41 chr20 52693364 52693523 + 1.25 NA Intergenic MLT1K|LTR|ERVL-MaLR 72605 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 238.5-16 chr18 45746824 45747030 + 1.25 NA intron (NM_001308278, intron 7 of 8) MIRb|SINE|MIR 19974 NM_001146037 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 114.75-18 chr10 132241554 132241692 + 1.25 NA intron (NM_001318878, intron 2 of 11) L1MD|LINE|L1 7485 NR_134911 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 167.75-31 chr2 30531849 30532062 + 1.25 NA intron (NM_182551, intron 3 of 6) L1ME3B|LINE|L1 84709 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 199.25-31 chr5 9766159 9766383 + 1.25 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -88106 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 215.5-25 chr2 98513141 98513438 + 1.25 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 67279 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 157.25-48 chr3 10415728 10415875 + 1.25 NA intron (NM_001001331, intron 2 of 22) intron (NM_001001331, intron 2 of 22) -21239 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 116.25-69 chr4 121854210 121854332 + 1.25 NA intron (NM_176824, intron 7 of 18) intron (NM_176824, intron 7 of 18) 16203 NM_176824 55212 Hs.591694 NM_018190 ENSG00000138686 BBS7 BBS2L1 Bardet-Biedl syndrome 7 protein-coding 224.25-10 chr14 47536600 47536867 + 1.25 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 138221 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 170.75-60 chr5 113185699 113185871 + 1.25 NA intron (NM_001085377, intron 3 of 18) L3|LINE|CR1 109153 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 151.75-29 chr14 70623507 70623722 + 1.25 NA intron (NR_110071, intron 2 of 2) L1M4|LINE|L1 17684 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 126.5-119 chr8 123083507 123083616 + 1.25 NA intron (NM_001363149, intron 3 of 21) L2|LINE|L2 10312 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 278.75-16 chr9 7182797 7183212 + 1.25 NA Intergenic MLT2B2|LTR|ERVL 425654 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 213.25-22 chr2 152176470 152176866 + 1.25 NA promoter-TSS (NM_005843) promoter-TSS (NM_005843) -905 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 259.5-16 chr2 95301357 95301753 + 1.25 NA intron (NM_013434, intron 1 of 8) MIRb|SINE|MIR 4208 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 236-13 chr14 71967087 71967275 + 1.25 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 33654 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 242.75-2 chr1 240672405 240672799 + 1.25 NA Intergenic Intergenic -60447 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 313.5-8 chr2 185759666 185760077 + 1.25 NA intron (NM_173651, intron 9 of 22) L1MD2|LINE|L1 -19394 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 270-8 chr15 72165526 72165798 + 1.25 NA intron (NM_001012642, intron 7 of 11) intron (NM_001012642, intron 7 of 11) 32125 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 192.25-35 chr7 54965600 54965788 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -53323 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 183-27 chr15 59832264 59832678 + 1.25 NA Intergenic Intergenic -143151 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 178-10 chr11 74342470 74342917 + 1.25 NA intron (NM_173582, intron 11 of 13) intron (NM_173582, intron 11 of 13) -31053 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 324-4 chr3 77112322 77112633 + 1.25 NA intron (NM_001290039, intron 2 of 26) AluSx1|SINE|Alu 14465 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 144-54 chr4 133282210 133282419 + 1.25 NA Intergenic MLT1H1|LTR|ERVL-MaLR 133020 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 250-10 chr15 52392497 52392848 + 1.25 NA intron (NM_001142495, intron 11 of 39) intron (NM_001142495, intron 11 of 39) -96868 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 183.5-76 chr8 125362969 125363176 + 1.25 NA intron (NM_001349486, intron 7 of 7) intron (NM_001349486, intron 7 of 7) -67286 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 249.25-13 chr2 36913695 36913927 + 1.25 NA intron (NM_003162, intron 3 of 17) MIRb|SINE|MIR 52725 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 178.75-49 chr5 104578173 104578479 + 1.25 NA Intergenic Intergenic -521148 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 227.75-6 chr14 60964661 60965002 + 1.25 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 16248 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 291.25-5 chr14 60849972 60850672 + 1.25 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 115561 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 142.5-50 chr3 40237959 40238221 + 1.25 NA intron (NM_001284426, intron 10 of 14) intron (NM_001284426, intron 10 of 14) 71608 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 224-11 chr18 69564977 69565308 + 1.25 NA intron (NM_152721, intron 2 of 7) intron (NM_152721, intron 2 of 7) 95211 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 127.5-92 chr4 136586718 136586870 + 1.25 NA Intergenic L1MC4|LINE|L1 -606962 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 121.5-64 chr2 102214687 102214837 + 1.25 NA intron (NM_001351447, intron 4 of 9) L1M5|LINE|L1 27448 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 256-27 chr8 63208220 63208550 + 1.25 NA intron (NM_152758, intron 4 of 4) intron (NM_152758, intron 4 of 4) 39382 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 150.75-67 chr7 77789010 77789175 + 1.25 NA Intergenic Intergenic 9342 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 215-9 chr11 124122952 124123255 + 1.25 NA exon (NM_198315, exon 7 of 10) exon (NM_198315, exon 7 of 10) 7653 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 205.25-37 chr5 168722808 168723152 + 1.25 NA exon (NM_001271946, exon 22 of 36) exon (NM_001271946, exon 22 of 36) 16053 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 138.25-67 chr4 89332226 89332395 + 1.25 NA Intergenic Arthur1B|DNA|hAT-Tip100 -24510 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 169-32 chr20 15129272 15129515 + 1.25 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -67447 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 214.5-45 chr4 106447133 106447369 + 1.25 NA intron (NR_147150, intron 2 of 3) THE1D-int|LTR|ERVL-MaLR 13627 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 221.5-30 chr3 45849056 45849383 + 1.25 NA intron (NM_001276378, intron 3 of 11) L2c|LINE|L2 -7100 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 145.25-47 chr20 7433840 7434053 + 1.25 NA Intergenic L1MCb|LINE|L1 62338 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 157.25-20 chr12 52760024 52760251 + 1.25 NA Intergenic Intergenic 17208 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 159.25-52 chr4 75408763 75408989 + 1.25 NA Intergenic L1MA5A|LINE|L1 54800 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 247.25-6 chr12 38909840 38910099 + 1.25 NA Intergenic Intergenic -4378 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 202.75-14 chr2 144776767 144777043 + 1.25 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 108938 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 332.25 chr11 10100679 10101008 + 1.25 NA intron (NM_030962, intron 2 of 39) HUERS-P1-int|LTR|ERV1 193364 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 185.5-73 chr8 120703339 120703642 + 1.25 NA intron (NM_021021, intron 1 of 6) MIR|SINE|MIR -57763 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 124.75-24 chr12 129649558 129649679 + 1.25 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 254407 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 174.5-52 chr22 27553715 27553915 + 1.25 NA Intergenic MLT1H|LTR|ERVL-MaLR 243164 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 161-20 chr12 1214848 1215071 + 1.25 NA intron (NR_027948, intron 12 of 19) MIRb|SINE|MIR 187211 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 187.75-20 chr2 19288439 19288674 + 1.25 NA Intergenic Intergenic -59873 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 196.75-29 chr4 84137298 84137473 + 1.25 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 161784 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 309.5-6 chr14 51463247 51463644 + 1.25 NA intron (NR_051990, intron 2 of 2) MER2B|DNA|TcMar-Tigger -25683 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 199.25-4 chr1 199522662 199522866 + 1.25 NA Intergenic Intergenic 374166 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 271.5-20 chr4 21114579 21114915 + 1.25 NA intron (NM_147182, intron 2 of 8) MIRb|SINE|MIR -130738 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 197.75-48 chr8 75886928 75887158 + 1.25 NA Intergenic Intergenic 347075 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 217.75-24 chr2 213881507 213881814 + 1.25 NA intron (NR_047660, intron 10 of 14) THE1D|LTR|ERVL-MaLR 123593 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 151.25-48 chr5 102974721 102974898 + 1.25 NA intron (NM_001364590, intron 16 of 25) intron (NM_001364590, intron 16 of 25) 108986 NM_138822 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 167-36 chr2 177048810 177049039 + 1.25 NA Intergenic Intergenic 163487 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 113.25-47 chr15 87184478 87184618 + 1.25 NA Intergenic L1ME1|LINE|L1 -196122 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 344.75-5 chr4 157375857 157376225 + 1.25 NA Intergenic Intergenic 155313 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 177.75-26 chr2 143882808 143883109 + 1.25 NA Intergenic MER8|DNA|TcMar-Tigger -54109 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 262.25-4 chr11 78671460 78671761 + 1.25 NA intron (NM_001098816, intron 31 of 33) intron (NM_001098816, intron 31 of 33) -96746 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 199-32 chr3 127316422 127316609 + 1.25 NA Intergenic LTR78|LTR|ERV1 -28469 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 161.75-48 chr6 77367716 77367986 + 1.25 NA Intergenic Intergenic 96171 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 348.25-5 chr3 24153923 24154370 + 1.25 NA intron (NM_001354708, intron 4 of 9) intron (NM_001354708, intron 4 of 9) 2822 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 179.5-94 chr8 117541601 117541859 + 1.25 NA Intergenic Intergenic 21017 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 139.25-89 chr9 108270508 108270809 + 1.25 NA Intergenic Intergenic 585328 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 158.5-30 chr12 128701019 128701187 + 1.25 NA intron (NM_001136103, intron 8 of 8) LTR16C|LTR|ERVL 122855 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 126.75-29 chr16 60176727 60176956 + 1.25 NA Intergenic Intergenic 182952 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 138.5-105 chr8 78853722 78854014 + 1.25 NA Intergenic Intergenic 16339 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 158.5-48 chr18 54812212 54812428 + 1.25 NA Intergenic MIR3|SINE|MIR -16157 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 175-48 chr5 15254785 15254991 + 1.25 NA intron (NR_109944, intron 1 of 2) intron (NR_109944, intron 1 of 2) 11672 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 170.5-28 chr15 43152184 43152341 + 1.25 NA intron (NM_024956, intron 8 of 13) intron (NM_024956, intron 8 of 13) 18676 NM_024956 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 189-14 chr11 70805246 70805423 + 1.25 NA intron (NM_012309, intron 12 of 24) intron (NM_012309, intron 12 of 24) -57456 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 180.75-45 chr4 32336665 32336918 + 1.25 NA Intergenic Intergenic -14247 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 129.75-3 chr1 156525145 156525291 + 1.25 NA TTS (NM_178229) TTS (NM_178229) -24443 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 171.5-81 chr6 124716800 124716937 + 1.25 NA intron (NM_001040214, intron 4 of 6) L2a|LINE|L2 -245677 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 160.75-4 chr1 188173838 188173987 + 1.25 NA Intergenic Intergenic 730284 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 251.5-12 chr19 12703761 12704056 + 1.25 NA promoter-TSS (NR_132756) promoter-TSS (NR_132756) -237 NR_132756 106633804 NR_132756 SNORD135 ZL2 small nucleolar RNA, C/D box 135 snoRNA 135-28 chr15 65874579 65874704 + 1.25 NA intron (NM_004663, intron 1 of 4) intron (NM_004663, intron 1 of 4) 5150 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 164.5-3 chr1 210283596 210283745 + 1.25 NA Intergenic AluSx|SINE|Alu -44582 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 195.5-21 chr13 24453755 24453951 + 1.25 NA intron (NM_006437, intron 22 of 33) AluSx1|SINE|Alu 58925 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 280.75-6 chr2 240067317 240067679 + 1.25 NA Intergenic L1M4|LINE|L1 -21426 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 328.25-7 chr15 75900521 75901143 + 1.25 NA 3' UTR (NM_173469, exon 13 of 13) 3' UTR (NM_173469, exon 13 of 13) -3027 NM_012170 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 147.75-7 chr10 51845975 51846158 + 1.25 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -146471 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 215.5-37 chr5 39093767 39094111 + 1.25 NA Intergenic Intergenic -19540 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 193-5 chr1 220455644 220455959 + 1.25 NA Intergenic MER50|LTR|ERV1 -72335 NM_001286129 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 130.5-30 chr13 43699948 43700064 + 1.25 NA intron (NM_001347969, intron 1 of 16) L1MA4|LINE|L1 -70529 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 275.5-32 chr8 82076568 82076827 + 1.25 NA Intergenic L1MB8|LINE|L1 -234411 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 133.25-25 chr14 81610709 81610880 + 1.25 NA intron (NR_110074, intron 1 of 2) intron (NR_110074, intron 1 of 2) 12267 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 281.75-18 chr7 1782706 1782997 + 1.25 NA Intergenic L1ME3E|LINE|L1 -40541 NR_120509 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 157.75-64 chr5 36721245 36721472 + 1.25 NA Intergenic Intergenic 114752 NM_001166695 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 191-3 chr1 172791544 172791715 + 1.25 NA Intergenic L1MB7|LINE|L1 132526 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 140.25-30 chr18 67780276 67780411 + 1.25 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 34479 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 244 chr1 50271376 50271643 + 1.25 NA Intergenic Intergenic 151934 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 277-3 chr11 88265715 88266099 + 1.25 NA Intergenic L1MA3|LINE|L1 71829 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 140-17 chr14 36702205 36702327 + 1.25 NA intron (NM_001171170, intron 7 of 10) L2a|LINE|L2 44698 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 231-7 chr10 117285118 117285399 + 1.25 NA exon (NM_173791, exon 5 of 5) exon (NM_173791, exon 5 of 5) 44144 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 288.25-14 chr3 41553835 41554288 + 1.25 NA intron (NR_136342, intron 30 of 34) L1MA3|LINE|L1 354556 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 242.25-13 chr17 78089800 78090016 + 1.25 NA intron (NM_018996, intron 14 of 20) L2b|LINE|L2 21891 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 209.25-56 chr9 87877756 87878035 + 1.25 NA intron (NR_149022, intron 3 of 3) intron (NR_149022, intron 3 of 3) -4982 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 152.5-61 chr20 51609996 51610219 + 1.25 NA exon (NM_006045, exon 24 of 28) exon (NM_006045, exon 24 of 28) -47268 NM_001258295 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 125.25-30 chr16 63855521 63855651 + 1.25 NA Intergenic Charlie8|DNA|hAT-Charlie 1266477 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 161-2 chr1 41490447 41490637 + 1.25 NA Intergenic Intergenic -5859 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 217.75-26 chr3 41534362 41534704 + 1.25 NA intron (NR_136342, intron 30 of 34) intron (NR_136342, intron 30 of 34) 335028 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 233.5-28 chr20 63027659 63028031 + 1.25 NA intron (NR_033370, intron 1 of 4) intron (NR_033370, intron 1 of 4) 9183 NR_028295 100144596 Hs.187773 NM_022099 LINC00029 C20orf51|NCRNA00029 long intergenic non-protein coding RNA 29 ncRNA 153.5-45 chr2 100250928 100251088 + 1.25 NA non-coding (NR_103730, exon 3 of 3) non-coding (NR_103730, exon 3 of 3) 42754 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 250.25-20 chr7 101630324 101630589 + 1.25 NA Intergenic Intergenic -1160 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 150.5-16 chr12 15657126 15657322 + 1.25 NA intron (NM_004447, intron 12 of 20) L2a|LINE|L2 110613 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 228-43 chr7 135930138 135930435 + 1.25 NA intron (NM_001128619, intron 3 of 3) intron (NM_001128619, intron 3 of 3) 47073 NM_145808 136319 Hs.602015 NM_145808 ENSG00000105887 MTPN GCDP|V-1 myotrophin protein-coding 375.75-7 chr18 73548693 73549221 + 1.25 NA Intergenic Intergenic 224016 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 204.5-71 chr9 82804057 82804311 + 1.25 NA Intergenic Intergenic 258958 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 152.25-36 chr2 240413730 240413954 + 1.25 NA Intergenic Intergenic -21821 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 177.5-45 chr22 22832686 22832967 + 1.25 NA Intergenic Intergenic 10050 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 331.25-4 chr3 128797314 128797672 + 1.25 NA intron (NM_004637, intron 2 of 5) intron (NM_004637, intron 2 of 5) -49315 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 226.5-14 chr12 126955523 126955808 + 1.25 NA intron (NR_104646, intron 4 of 6) intron (NR_104646, intron 4 of 6) -80975 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 154.25-31 chr15 25669357 25669526 + 1.25 NA Intergenic Intergenic 179384 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 183.5-36 chr2 76311215 76311429 + 1.25 NA Intergenic Intergenic -600407 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 112.75-15 chr10 97878262 97878460 + 1.25 NA intron (NM_018058, intron 14 of 14) intron (NM_018058, intron 14 of 14) -2464 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 265.5-20 chr5 1840736 1840977 + 1.25 NA Intergenic Intergenic 15712 NR_104602 101929034 Hs.128032 NR_104602 ENSG00000250417 LINC02116 - long intergenic non-protein coding RNA 2116 ncRNA 237.25-6 chr10 69533694 69534003 + 1.25 NA Intergenic MER21B|LTR|ERVL 39574 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 215-8 chr11 54809405 54809595 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr 102668 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 144.75-57 chr3 120937516 120937770 + 1.25 NA intron (NR_145517, intron 2 of 8) L1MCa|LINE|L1 28966 NM_001348345 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 253.5-27 chr2 211343806 211344099 + 1.25 NA Intergenic MER92B|LTR|ERV1 726381 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 144.75-36 chr19 46254919 46255100 + 1.25 NA Intergenic Intergenic 25267 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 201.5-32 chr2 82179084 82179402 + 1.25 NA Intergenic MLT1A|LTR|ERVL-MaLR -677560 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 302.5-14 chr4 110752186 110752598 + 1.25 NA Intergenic Intergenic 108255 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 318.5-10 chr19 58362376 58362904 + 1.25 NA promoter-TSS (NR_136527) promoter-TSS (NR_136527) 14 NR_136527 105372483 Hs.616656 NR_136527 ENSG00000269054 LOC105372483 - uncharacterized LOC105372483 ncRNA 167.75-40 chr21 29569236 29569657 + 1.25 NA intron (NM_000830, intron 14 of 16) MIR|SINE|MIR -26594 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 326.5 chr1 36073764 36074251 + 1.25 NA Intergenic Intergenic -10087 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 200.5-2 chr1 91295851 91296238 + 1.25 NA intron (NM_001017975, intron 30 of 38) AluYj4|SINE|Alu 108793 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 130-5 chr10 74399433 74399617 + 1.25 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 129799 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 114.25-89 chr6 56354970 56355143 + 1.25 NA intron (NM_001318752, intron 1 of 28) L1MC5|LINE|L1 39072 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 253.5-30 chr4 32787499 32787779 + 1.25 NA Intergenic Intergenic 436601 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 195.25-11 chr11 83498712 83498916 + 1.25 NA intron (NM_001142699, intron 21 of 27) L1M4|LINE|L1 183611 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 118 chr1 49035073 49035174 + 1.25 NA intron (NM_001323575, intron 5 of 12) L1MD3|LINE|L1 -222288 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 148.25-9 chr10 52888394 52888601 + 1.25 NA Intergenic Intergenic -116797 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 207.5-17 chr14 69306963 69307138 + 1.25 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 46892 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 219-23 chr4 56028717 56028926 + 1.25 NA intron (NM_025009, intron 25 of 25) MER21B|LTR|ERVL 79876 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 126.5-83 chr4 105525720 105525893 + 1.25 NA Intergenic L1ME3C|LINE|L1 -26814 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 243-31 chr9 25394016 25394262 + 1.25 NA Intergenic Intergenic 284719 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 145.25-8 chr1 207865918 207866090 + 1.25 NA Intergenic Intergenic -43301 NR_135298 100128537 Hs.445414 NR_135298 MIR29B2CHG C1orf132 MIR29B2 and MIR29C host gene ncRNA 180-46 chr22 25111555 25111717 + 1.25 NA intron (NR_038941, intron 2 of 4) intron (NR_038941, intron 2 of 4) 1056 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 140-64 chr8 110410623 110410780 + 1.25 NA Intergenic L1MA10|LINE|L1 -434930 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 202.5-45 chr5 172536289 172536491 + 1.25 NA Intergenic L1ME1|LINE|L1 22624 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 249.75-8 chr12 58379426 58379721 + 1.25 NA Intergenic Intergenic -212129 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 126-52 chr20 51124335 51124539 + 1.25 NA Intergenic MIR|SINE|MIR -101330 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 141.75-33 chr17 63158993 63159166 + 1.25 NA intron (NM_025185, intron 4 of 25) MLT1F2|LTR|ERVL-MaLR 192844 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 259.75-5 chr11 82692665 82693014 + 1.25 NA Intergenic Intergenic 41025 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 166.5-24 chr12 46955864 46956161 + 1.25 NA Intergenic MER41G|LTR|ERV1 -123591 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 257.75-6 chr12 17124840 17125168 + 1.25 NA Intergenic Intergenic 136257 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 239.5-21 chr5 15288070 15288407 + 1.25 NA Intergenic Intergenic -21678 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 196.25-36 chr2 155553775 155554017 + 1.25 NA Intergenic L1MCc|LINE|L1 701035 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 223-15 chr14 46247108 46247446 + 1.25 NA intron (NR_102702, intron 3 of 3) MER92B|LTR|ERV1 183118 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 203.75-16 chr17 76825484 76825756 + 1.25 NA Intergenic AluSx1|SINE|Alu 26576 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 215.25-14 chr17 49994355 49994527 + 1.25 NA intron (NM_005220, intron 1 of 2) CpG-11405 783 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 261.5-34 chrX 76861893 76862204 + 1.25 NA intron (NR_110403, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 57312 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 220.75-39 chrX 14994359 14994535 + 1.25 NA Intergenic MIR|SINE|MIR 109156 NM_001177475 158747 Hs.744919 NM_152581 ENSG00000130150 MOSPD2 - motile sperm domain containing 2 protein-coding 180.75-54 chr6 125390766 125391042 + 1.25 NA Intergenic Intergenic -88937 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 216-7 chr12 46548981 46549205 + 1.25 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 164986 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 199.75-5 chr12 27441646 27441906 + 1.25 NA intron (NR_109975, intron 1 of 3) L1MA4|LINE|L1 4858 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 131.5-9 chr10 26224217 26224408 + 1.25 NA intron (NM_000818, intron 5 of 16) intron (NM_000818, intron 5 of 16) 7538 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 231.5-8 chr12 90422796 90423148 + 1.25 NA Intergenic L1M5|LINE|L1 129654 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 132.25-51 chr20 10384201 10384429 + 1.25 NA Intergenic Intergenic 47610 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 141.5-115 chr8 135802089 135802249 + 1.25 NA Intergenic AluSz|SINE|Alu 344713 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 169.75-31 chr2 5839851 5840110 + 1.25 NA Intergenic Intergenic -27384 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 167.25-18 chr10 128437307 128437587 + 1.25 NA Intergenic Intergenic 151497 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 233.75-12 chr14 60147434 60147795 + 1.25 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 17784 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 131.25-58 chr3 59824815 59824961 + 1.25 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -166391 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 127-30 chr14 58067739 58067899 + 1.25 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 84394 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 141.25-72 chr8 84030724 84030860 + 1.25 NA Intergenic Intergenic -151995 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 132.75-61 chr3 22477084 22477274 + 1.25 NA Intergenic Intergenic 520040 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 162.25-10 chr14 58543690 58543905 + 1.25 NA intron (NM_001329943, intron 30 of 30) intron (NM_001329943, intron 30 of 30) -90271 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 257.5-3 chr1 185414076 185414372 + 1.25 NA Intergenic L1ME4a|LINE|L1 -79185 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 136.5-32 chr14 58622393 58622509 + 1.25 NA Intergenic Intergenic -11617 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 137.25-77 chr8 86104196 86104374 + 1.25 NA intron (NM_152565, intron 1 of 7) AluJo|SINE|Alu 5375 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 201.25-8 chr11 101079282 101079674 + 1.25 NA intron (NR_073142, intron 2 of 6) L1M2|LINE|L1 49585 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 297.25-7 chr11 23742725 23743142 + 1.25 NA Intergenic L1MA8|LINE|L1 -323743 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 140.25-31 chr2 12791650 12791887 + 1.25 NA Intergenic L1M5|LINE|L1 54401 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 155.25-40 chr20 49573443 49573583 + 1.25 NA Intergenic Intergenic -5376 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 210.5-22 chr16 6872614 6872853 + 1.25 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 98924 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 158.5-99 chr8 22304782 22305066 + 1.25 NA intron (NM_001330480, intron 12 of 21) intron (NM_001330480, intron 12 of 21) 29357 NM_001135721 55124 Hs.614809 NM_018068 ENSG00000197181 PIWIL2 CT80|HILI|PIWIL1L|mili piwi like RNA-mediated gene silencing 2 protein-coding 235-37 chr5 109491117 109491436 + 1.25 NA Intergenic MIRc|SINE|MIR -81302 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 141.75-86 chrX 71941364 71941557 + 1.25 NA intron (NM_001013627, intron 1 of 7) MIR|SINE|MIR 30372 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 219-42 chr9 38288405 38288706 + 1.25 NA Intergenic MamGypLTR1b|LTR|Gypsy -104147 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 165.75-8 chr10 112819028 112819259 + 1.25 NA TTS (NM_001318205) TTS (NM_001318205) -4353 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 155.5-71 chr3 20556705 20556882 + 1.25 NA Intergenic Intergenic 214325 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 218.25-40 chr6 18078630 18078870 + 1.25 NA Intergenic L2a|LINE|L2 43927 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 202.75-8 chr14 50722468 50722656 + 1.25 NA 3' UTR (NM_020921, exon 31 of 31) 3' UTR (NM_020921, exon 31 of 31) -54256 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 181-23 chr14 47148598 47148822 + 1.25 NA intron (NM_001113498, intron 3 of 16) HERV16-int|LTR|ERVL 194536 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 237-2 chr10 34358951 34359295 + 1.25 NA intron (NM_001184789, intron 13 of 22) intron (NM_001184789, intron 13 of 22) 456173 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 174.25-42 chr3 188459970 188460237 + 1.25 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 108563 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 256.5-17 chr16 56010172 56010565 + 1.25 NA Intergenic Intergenic -54337 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 156.25-8 chr10 102031126 102031363 + 1.25 NA intron (NM_024541, intron 4 of 25) MIR|SINE|MIR 24929 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 415.75-5 chr4 38809279 38810046 + 1.25 NA Intergenic L1MB8|LINE|L1 -4871 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 192.25-25 chr21 20299561 20299768 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR -40979 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 184.75-30 chr2 14620418 14620791 + 1.25 NA Intergenic A-rich|Low_complexity|Low_complexity -12113 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 173.5-33 chr17 54627979 54628360 + 1.25 NA Intergenic MLT1J2|LTR|ERVL-MaLR -272522 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 171-45 chr5 13739276 13739577 + 1.25 NA intron (NM_001369, intron 65 of 78) THE1D|LTR|ERVL-MaLR 205054 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 133.75-13 chr10 78810894 78811156 + 1.25 NA Intergenic Intergenic 256423 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 180.5-96 chr9 125747521 125747738 + 1.25 NA promoter-TSS (NM_001134778) promoter-TSS (NM_001134778) 256 NR_024123 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 248-12 chr2 146507514 146507766 + 1.25 NA Intergenic Intergenic -79417 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 112.75-86 chr8 120568216 120568442 + 1.25 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 122910 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 204.75-43 chr7 22251122 22251393 + 1.25 NA intron (NM_012294, intron 7 of 25) intron (NM_012294, intron 7 of 25) -56447 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 131.25-40 chr2 13894430 13894610 + 1.25 NA Intergenic L1MA5|LINE|L1 506438 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 194.25-29 chr2 178878709 178878887 + 1.25 NA intron (NM_001316745, intron 11 of 11) intron (NM_001316745, intron 11 of 11) -71375 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 300.25-9 chr2 126699455 126699759 + 1.25 NA Intergenic Intergenic 43449 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 271-9 chr18 78822160 78822518 + 1.25 NA Intergenic Intergenic -157936 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 167-24 chr17 60057564 60057919 + 1.25 NA intron (NM_022070, intron 11 of 19) L1MC5a|LINE|L1 -14636 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 223.75-22 chr6 37093371 37093589 + 1.25 NA Intergenic MamTip2|DNA|hAT-Tip100 -76672 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 232.5-43 chr6 37440759 37440965 + 1.25 NA intron (NM_015050, intron 2 of 23) intron (NM_015050, intron 2 of 23) 7641 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 275.75-10 chr17 50181252 50181559 + 1.25 NA Intergenic Intergenic -8929 NR_024192 373861 Hs.25934 NM_194072 HILS1 H1.9 histone linker H1 domain, spermatid-specific 1 (pseudogene) pseudo 144.25-6 chr1 150189768 150189938 + 1.25 NA Intergenic MLT2A1|LTR|ERVL 29125 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 168.25-42 chr3 178160862 178161155 + 1.25 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -258193 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 192.5-17 chr14 21598243 21598420 + 1.25 NA Intergenic L1MA4|LINE|L1 -27587 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 125-76 chr5 144779 144929 + 1.25 NA exon (NM_052909, exon 6 of 20) exon (NM_052909, exon 6 of 20) -46641 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 134.75-34 chr2 123451051 123451245 + 1.25 NA Intergenic Intergenic -377667 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 116.25-97 chr8 137823493 137823728 + 1.25 NA intron (NR_161374, intron 6 of 7) intron (NR_161374, intron 6 of 7) 259935 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 192.5-39 chr3 27063612 27063779 + 1.25 NA Intergenic Intergenic 152828 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 195-42 chr4 76755945 76756173 + 1.25 NA intron (NM_020859, intron 7 of 10) intron (NM_020859, intron 7 of 10) 142085 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 222-43 chr8 84303237 84303586 + 1.25 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -112073 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 211.75-39 chr9 36906637 36906807 + 1.25 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -13191 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 228.75-8 chr11 131853091 131853395 + 1.25 NA intron (NM_001352006, intron 2 of 9) L1PA11|LINE|L1 -56681 NR_147850 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 141.25-17 chr11 110568990 110569178 + 1.25 NA Intergenic L1MDa|LINE|L1 139136 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 133.75-72 chr7 107754029 107754234 + 1.25 NA intron (NR_024199, intron 5 of 6) intron (NR_024199, intron 5 of 6) -9550 NR_144537 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 258.75-5 chr10 21206229 21206463 + 1.25 NA Intergenic Mam_R4|LINE|Dong-R4 32044 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 205.5-61 chr8 127067382 127067583 + 1.25 NA Intergenic L1MC1|LINE|L1 -12392 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 182-9 chr11 33527579 33527731 + 1.25 NA intron (NM_012194, intron 1 of 20) L1PB1|LINE|L1 151547 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 224.5-13 chr15 64453201 64453397 + 1.25 NA intron (NM_001321924, intron 12 of 12) intron (NM_001321924, intron 12 of 12) -46121 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 182.5-34 chr2 174001662 174002018 + 1.25 NA Intergenic AluJr|SINE|Alu -23440 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 217.25-24 chr5 9459733 9460209 + 1.25 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -51362 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 213.75-5 chr1 102420621 102420875 + 1.25 NA Intergenic L1MC|LINE|L1 -423514 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 195.75-53 chr8 88471874 88472327 + 1.25 NA Intergenic THE1C-int|LTR|ERVL-MaLR -144617 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 132-62 chr5 150752614 150752737 + 1.25 NA intron (NM_001135643, intron 3 of 13) L1ME3G|LINE|L1 5845 NM_001135644 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 224-26 chr5 138850724 138851009 + 1.25 NA intron (NM_001323985, intron 7 of 17) intron (NM_001323985, intron 7 of 17) -24364 NM_001323990 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 282.75-7 chr17 60246412 60246648 + 1.25 NA intron (NM_032582, intron 11 of 33) L1MA4|LINE|L1 -14885 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 250-25 chr5 132036294 132036542 + 1.25 NA Intergenic L1MEg|LINE|L1 -24237 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 169.5 chr1 35012759 35012910 + 1.25 NA intron (NM_007167, intron 6 of 15) intron (NM_007167, intron 6 of 15) 19111 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 216.5-40 chr7 137152967 137153292 + 1.25 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 11212 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 322.25-15 chr8 135276153 135276485 + 1.25 NA intron (NR_120396, intron 1 of 4) MLT1G1|LTR|ERVL-MaLR 42188 NR_120395 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 233-8 chr10 100006070 100006391 + 1.25 NA intron (NM_015221, intron 1 of 16) intron (NM_015221, intron 1 of 16) 3717 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 196.75-24 chr3 10318915 10319132 + 1.25 NA intron (NM_001278946, intron 1 of 4) L2a|LINE|L2 2018 NM_001136232 6396 Hs.166924 NM_030673 ENSG00000157020 SEC13 D3S1231E|SEC13L1|SEC13R|npp-20 SEC13 homolog, nuclear pore and COPII coat complex component protein-coding 177.5-15 chr13 38439751 38439982 + 1.25 NA Intergenic MER90a|LTR|ERV1 90015 NM_001286703 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 125.25-32 chr17 56651226 56651387 + 1.25 NA Intergenic Intergenic 57607 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 167 chr1 63433258 63433425 + 1.25 NA intron (NM_013339, intron 14 of 14) intron (NM_013339, intron 14 of 14) 65714 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 119.5-20 chr11 33318739 33318907 + 1.25 NA intron (NM_001278162, intron 2 of 15) intron (NM_001278162, intron 2 of 15) -57285 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 168-11 chr1 194933233 194933493 + 1.25 NA Intergenic L1PA16|LINE|L1 1155352 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 235.5-23 chr17 72086210 72086615 + 1.25 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 14079 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 188-32 chr5 129942388 129942666 + 1.25 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 38062 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 170.25-25 chr15 75487400 75487583 + 1.25 NA intron (NM_002833, intron 8 of 12) intron (NM_002833, intron 8 of 12) -31676 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 182.75-12 chr15 61773941 61774265 + 1.25 NA Intergenic L1MEc|LINE|L1 44185 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 194.5-53 chr4 57415861 57416166 + 1.25 NA Intergenic Intergenic -9859 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 185.5-45 chr22 24395441 24395627 + 1.25 NA intron (NM_001254732, intron 13 of 14) intron (NM_001254732, intron 13 of 14) -28063 NM_001278500 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 235.25-23 chr5 130600955 130601276 + 1.25 NA Intergenic Intergenic 564141 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 194 chr1 27786995 27787219 + 1.25 NA intron (NM_177424, intron 1 of 8) intron (NM_177424, intron 1 of 8) 13888 NM_177424 23673 Hs.523855 NM_177424 ENSG00000117758 STX12 STX13|STX14 syntaxin 12 protein-coding 168.5-19 chr13 69790886 69791084 + 1.25 NA intron (NM_001286725, intron 6 of 9) L1MB7|LINE|L1 -316228 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 167.5-88 chr8 139761757 139761994 + 1.25 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -58752 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 215.5-11 chr12 18468290 18468510 + 1.25 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 206860 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 326.75-8 chr20 59679066 59679436 + 1.25 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 2590 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 186.5-11 chr10 93517147 93517392 + 1.25 NA intron (NM_018131, intron 6 of 8) intron (NM_018131, intron 6 of 8) 20657 NM_001127182 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 160.5-59 chr5 98100658 98100875 + 1.25 NA intron (NR_146477, intron 3 of 4) intron (NR_146477, intron 3 of 4) 60473 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 426.25 chr1 94203108 94203624 + 1.25 NA intron (NM_001328665, intron 7 of 21) intron (NM_001328665, intron 7 of 21) 34218 NM_001328667 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 153.75-89 chr8 139689104 139689323 + 1.25 NA intron (NR_104210, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 13910 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 176.5-38 chr18 162203 162492 + 1.25 NA intron (NM_001037334, intron 1 of 14) L1MB3|LINE|L1 3790 NM_005151 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 193-16 chr13 76305245 76305506 + 1.25 NA Intergenic Intergenic -370243 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 172.75-11 chr14 89175196 89175352 + 1.25 NA intron (NM_001085471, intron 6 of 6) intron (NM_001085471, intron 6 of 6) 241959 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 118-71 chr8 91516936 91517134 + 1.25 NA Intergenic Intergenic 267716 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 154.25-53 chr5 60246135 60246375 + 1.25 NA intron (NM_001364599, intron 1 of 16) L1ME3E|LINE|L1 126408 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 143.75-70 chr5 44066027 44066345 + 1.25 NA Intergenic Intergenic -322546 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 124.75-34 chr17 44881093 44881272 + 1.25 NA intron (NM_001142605, intron 6 of 26) intron (NM_001142605, intron 6 of 26) 18186 NM_001258353 9343 Hs.151787 NM_004247 ENSG00000108883 EFTUD2 MFDGA|MFDM|SNRNP116|Snrp116|Snu114|U5-116KD elongation factor Tu GTP binding domain containing 2 protein-coding 185.25-27 chr2 115888320 115888549 + 1.25 NA Intergenic Intergenic 544619 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 287.25-2 chr1 145845641 145845928 + 1.25 NA exon (NM_001012758, exon 1 of 8) exon (NM_001012758, exon 1 of 8) 154 NM_001012758 200035 Hs.585066 NM_001012758 ENSG00000186364 NUDT17 - nudix hydrolase 17 protein-coding 219.5-30 chr3 71111531 71111876 + 1.25 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) 18883 NM_001349337 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 115.75-3 chr1 110379267 110379485 + 1.25 NA intron (NM_004696, intron 5 of 8) intron (NM_004696, intron 5 of 8) 11650 NM_001319220 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 211-15 chr2 58731326 58731523 + 1.25 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 210671 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 175.5-31 chr16 60273264 60273407 + 1.25 NA Intergenic L1PA17|LINE|L1 86458 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 270.25-13 chr5 37307309 37307621 + 1.25 NA intron (NM_001278312, intron 23 of 33) intron (NM_001278312, intron 23 of 33) -58037 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 324.5-8 chr17 64677550 64677939 + 1.25 NA Intergenic AluSx1|SINE|Alu -15437 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 275.75-14 chr2 240264294 240264728 + 1.25 NA Intergenic L1ME2|LINE|L1 -123853 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 134.5-99 chr8 137015075 137015206 + 1.25 NA Intergenic L1MEc|LINE|L1 398448 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 194.25-14 chr14 51567231 51567450 + 1.25 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 32612 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 141-68 chr6 45078907 45079093 + 1.25 NA intron (NM_001350327, intron 2 of 9) L1M2|LINE|L1 118770 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 347.75 chr1 40289338 40289745 + 1.25 NA intron (NM_005857, intron 8 of 9) ERVL-E-int|LTR|ERVL 27745 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 180.75-10 chr10 15849152 15849370 + 1.25 NA intron (NM_024948, intron 1 of 14) L2c|LINE|L2 11246 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 174.5-85 chr9 23497785 23498090 + 1.25 NA Intergenic Intergenic 174462 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 213.5-13 chr13 56467494 56467728 + 1.25 NA Intergenic Intergenic -673307 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 153.5-92 chr8 84001765 84001918 + 1.25 NA Intergenic Intergenic -180946 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 171-52 chr7 36985383 36985603 + 1.25 NA promoter-TSS (NM_001039459) promoter-TSS (NM_001039459) -381 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 120.75-49 chr2 70225145 70225249 + 1.25 NA intron (NR_147232, intron 4 of 10) intron (NR_147232, intron 4 of 10) 23431 NM_001351524 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 142.5-16 chr11 58660839 58661104 + 1.25 NA Intergenic AluY|SINE|Alu 38306 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 286.5-2 chr1 239858154 239858430 + 1.25 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 41580 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 158-54 chr5 177246735 177246955 + 1.25 NA intron (NM_172349, intron 11 of 23) intron (NM_172349, intron 11 of 23) 56874 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 124.75-48 chr2 157762183 157762397 + 1.25 NA intron (NM_001111067, intron 8 of 10) MER44A|DNA|TcMar-Tigger 76340 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 300.5-18 chr4 70439266 70439737 + 1.25 NA intron (NM_001145006, intron 1 of 3) intron (NM_001145006, intron 1 of 3) 9009 NM_001145006 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 161.25-10 chr10 75677865 75678087 + 1.25 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 30467 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 114-56 chr3 65185639 65185818 + 1.25 NA Intergenic Intergenic -497728 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 186.5-61 chr9 85115334 85115575 + 1.25 NA Intergenic L1MA5|LINE|L1 409553 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 250.25-21 chr8 65816267 65816607 + 1.25 NA intron (NM_001242318, intron 1 of 12) L1M4a2|LINE|L1 25627 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 164-71 chr9 72801687 72801921 + 1.25 NA intron (NM_138691, intron 17 of 23) intron (NM_138691, intron 17 of 23) 72305 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 334.25-2 chr12 12520065 12520540 + 1.25 NA intron (NM_030640, intron 2 of 6).2 intron (NM_030640, intron 2 of 6).2 42561 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 255.75-4 chr14 20097632 20097930 + 1.25 NA Intergenic Intergenic -19687 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 181.75-37 chr7 7253391 7253669 + 1.25 NA Intergenic Intergenic -1624 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 132-79 chr9 33901318 33901505 + 1.25 NA intron (NM_017811, intron 3 of 4) L1MC3|LINE|L1 32953 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 164.75 chr1 119367063 119367287 + 1.25 NA Intergenic Intergenic -1610 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 163.75-50 chr4 62457129 62457343 + 1.25 NA Intergenic Intergenic -295471 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 227.75-27 chr9 126515942 126516234 + 1.25 NA Intergenic Intergenic -98355 NM_002316 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 213-16 chr14 37129487 37129917 + 1.25 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -42324 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 235.75-31 chrX 95590764 95590976 + 1.25 NA Intergenic Intergenic -527644 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 192-28 chr2 43344540 43344839 + 1.25 NA intron (NM_001083953, intron 29 of 37) intron (NM_001083953, intron 29 of 37) 117478 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 114.75-47 chr2 40973747 40973951 + 1.25 NA Intergenic Intergenic -461414 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 194.5-6 chr10 12704201 12704394 + 1.25 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) 21056 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 171.5-10 chr10 89741457 89741765 + 1.25 NA intron (NM_016195, intron 21 of 32) MIR|SINE|MIR 40021 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 197.75-9 chr12 81347884 81348247 + 1.25 NA intron (NM_001282536, intron 14 of 29) intron (NM_001282536, intron 14 of 29) 21304 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 163.5-87 chr8 19503810 19504045 + 1.25 NA intron (NM_001130518, intron 4 of 9) intron (NM_001130518, intron 4 of 9) 98618 NM_001354492 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 114.5-52 chr2 74516627 74516756 + 1.25 NA 3' UTR (NM_016170, exon 3 of 3) 3' UTR (NM_016170, exon 3 of 3) 2241 NM_016170 3196 Hs.168586 NM_016170 ENSG00000115297 TLX2 HOX11L1|NCX T cell leukemia homeobox 2 protein-coding 138.5 chr1 8681323 8681472 + 1.25 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 136243 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 244.75-6 chr10 105604315 105604580 + 1.25 NA Intergenic L1ME3A|LINE|L1 215886 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 286-16 chr2 232631333 232631683 + 1.25 NA intron (NM_001243252, intron 1 of 3) AluJb|SINE|Alu -2096 NM_025202 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 223.5-9 chr10 21090502 21090826 + 1.25 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -83326 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 265.75-4 chr11 112772999 112773514 + 1.25 NA Intergenic L2c|LINE|L2 -188164 NM_181351 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 194.25-54 chrX 136804632 136804915 + 1.25 NA Intergenic L1M5|LINE|L1 -23841 NM_004840 9459 Hs.522795 NM_004840 ENSG00000129675 ARHGEF6 COOL2|Cool-2|MRX46|PIXA|alpha-PIX|alphaPIX Rac/Cdc42 guanine nucleotide exchange factor 6 protein-coding 127.5-70 chr2 200410737 200410859 + 1.25 NA intron (NM_001100423, intron 3 of 12) intron (NM_001100423, intron 3 of 12) 99270 NM_152387 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 203.5-53 chr9 32949695 32949957 + 1.25 NA Intergenic L1M5|LINE|L1 51750 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 161-23 chr14 27889644 27889790 + 1.25 NA Intergenic Intergenic -216496 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 258.75 chr1 49040669 49041113 + 1.25 NA intron (NM_001323575, intron 5 of 12) L1ME1|LINE|L1 -216520 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 144-31 chr2 103184008 103184239 + 1.25 NA Intergenic L1MDa|LINE|L1 -199694 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 140-27 chr17 65021574 65021748 + 1.25 NA intron (NM_006572, intron 2 of 3) intron (NM_006572, intron 2 of 3) 34113 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 130-18 chr13 55496034 55496169 + 1.25 NA Intergenic Intergenic 321647 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 144-12 chr10 126358985 126359164 + 1.25 NA intron (NM_001288974, intron 1 of 18) THE1B|LTR|ERVL-MaLR 29403 NM_021641 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 298.5-8 chr12 37884905 37885391 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -431626 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 320.75-6 chr6 115411991 115412351 + 1.25 NA Intergenic Intergenic 231664 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 131.75-52 chr22 34259403 34259519 + 1.25 NA Intergenic HAL1|LINE|L1 -336573 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 160.25-24 chr17 18202398 18202686 + 1.25 NA intron (NM_017758, intron 2 of 3) intron (NM_017758, intron 2 of 3) 18714 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 145.75-34 chr2 28762722 28762901 + 1.25 NA intron (NM_206876, intron 2 of 8) Charlie1a|DNA|hAT-Charlie 10981 NM_002709 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|NSLH2|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 160.5-41 chr20 14082844 14083092 + 1.25 NA intron (NM_001351663, intron 2 of 17) Charlie25|DNA|hAT-Charlie 87452 NM_001351663 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 181.75-25 chr3 160335410 160335581 + 1.25 NA intron (NM_001190242, intron 7 of 18) AluSx1|SINE|Alu 48271 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 179-11 chr10 96463140 96463338 + 1.25 NA intron (NM_012465, intron 2 of 20) intron (NM_012465, intron 2 of 20) 50687 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 383.75-2 chr4 64444695 64445225 + 1.25 NA Intergenic MER4B-int|LTR|ERV1 -35500 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 233.5-17 chr14 57683684 57684026 + 1.25 NA intron (NM_001352014, intron 1 of 9) LTR78B|LTR|ERV1 181144 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 147.75-31 chr17 60361677 60361912 + 1.25 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 30339 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 165.75-28 chr18 2526431 2526621 + 1.25 NA Intergenic MLT1A0|LTR|ERVL-MaLR 44979 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 283.75-15 chr8 91618250 91618621 + 1.25 NA Intergenic L2|LINE|L2 369116 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 174.5-57 chr3 102791500 102791671 + 1.25 NA Intergenic Intergenic 356570 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 174.5-50 chr22 22136639 22136952 + 1.25 NA Intergenic ALR/Alpha|Satellite|centr -92861 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 155-27 chr2 103750541 103750716 + 1.25 NA Intergenic Intergenic 657704 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 269.75-15 chr6 129488218 129488550 + 1.25 NA intron (NM_000426, intron 56 of 64) intron (NM_000426, intron 56 of 64) 221793 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 170-9 chr12 41211593 41211799 + 1.25 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 23376 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 128.25-76 chr6 167864978 167865112 + 1.25 NA intron (NM_001207008, intron 2 of 31) intron (NM_001207008, intron 2 of 31) 37410 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 162.5-88 chr8 13957491 13957780 + 1.25 NA Intergenic ERVL-B4-int|LTR|ERVL 327945 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 154.25-28 chr14 66540365 66540578 + 1.25 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 33064 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 133.75-25 chr14 72758001 72758214 + 1.25 NA intron (NM_001280544, intron 2 of 9) intron (NM_001280544, intron 2 of 9) 134542 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 127.25-12 chr10 42319429 42319606 + 1.25 NA Intergenic Intergenic 48528 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 229.5-53 chr8 124263567 124263839 + 1.25 NA Intergenic L1MB2|LINE|L1 -16305 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 241.75-24 chr5 15111601 15111848 + 1.25 NA Intergenic Intergenic 154836 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 118.5-32 chr12 124148872 124149002 + 1.25 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) -140227 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 213-38 chr6 37032372 37032555 + 1.25 NA Intergenic L2a|LINE|L2 26808 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 114.5-6 chr10 20855630 20855759 + 1.25 NA intron (NM_006393, intron 9 of 27) intron (NM_006393, intron 9 of 27) 41908 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 182.25-4 chr10 34025981 34026230 + 1.25 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -253425 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 306.25-6 chr14 63901019 63901410 + 1.25 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 48210 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 255.75-11 chr17 71897738 71898129 + 1.25 NA Intergenic L1MEi|LINE|L1 128046 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 145.5-79 chr5 148344733 148344897 + 1.25 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 9256 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 246.25-12 chr2 49565731 49566123 + 1.25 NA Intergenic Intergenic 408276 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 133.25-24 chr14 71360188 71360383 + 1.25 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -38052 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 232.25-9 chr18 3475470 3475758 + 1.25 NA intron (NR_110429, intron 2 of 2) AluSq2|SINE|Alu 9364 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 201.25-36 chr5 146914908 146915177 + 1.25 NA intron (NR_047115, intron 3 of 3) L2a|LINE|L2 4464 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 116.25-19 chr12 116888204 116888432 + 1.25 NA Intergenic MER20|DNA|hAT-Charlie -6877 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 154.75-41 chr22 27106461 27106664 + 1.25 NA Intergenic MIR|SINE|MIR -46044 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 182.25-29 chr2 229995440 229995757 + 1.25 NA intron (NM_174899, intron 2 of 3) (TCTT)n|Simple_repeat|Simple_repeat -72418 NM_001348335 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 297.75-11 chr2 44993437 44993848 + 1.25 NA Intergenic L1M4|LINE|L1 15810 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 206.25-40 chr9 34595977 34596275 + 1.25 NA Intergenic L2a|LINE|L2 -5986 NM_001207011 1271 Hs.129966 NM_001842 ENSG00000122756 CNTFR - ciliary neurotrophic factor receptor protein-coding 211-10 chr12 45404980 45405323 + 1.25 NA intron (NM_001025356, intron 15 of 19) intron (NM_001025356, intron 15 of 19) 112461 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 179.25-10 chr11 114901954 114902203 + 1.25 NA Intergenic AluJr|SINE|Alu 223551 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 142.25-8 chr10 67797582 67797742 + 1.25 NA intron (NM_021800, intron 4 of 4) L1ME4a|LINE|L1 40517 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 213.5-54 chr9 75779289 75779530 + 1.25 NA Intergenic L1MA3|LINE|L1 -111235 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 183.25-32 chr3 128634546 128634734 + 1.25 NA intron (NM_002950, intron 3 of 9) AluSg|SINE|Alu 16178 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 128.5-95 chr8 52808612 52808771 + 1.25 NA Intergenic L1ME1|LINE|L1 -94225 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 230.5-63 chrX 88159353 88159603 + 1.25 NA Intergenic HERVL-int|LTR|ERVL -587747 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 153.5-12 chr10 59227733 59227969 + 1.25 NA intron (NM_001143774, intron 1 of 4) L1MD|LINE|L1 50384 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 116.25-86 chr7 112226100 112226193 + 1.25 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 19451 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 235-28 chr20 50662210 50662552 + 1.25 NA intron (NM_001290268, intron 1 of 21) MIRb|SINE|MIR 16910 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 467 chr11 92870698 92871173 + 1.25 NA intron (NM_001008781, intron 21 of 24) MIRb|SINE|MIR 44693 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 209.25-21 chr20 15850004 15850285 + 1.25 NA intron (NM_001351663, intron 8 of 17) LTR16C|LTR|ERVL 73170 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 178.25-54 chr6 74066465 74066800 + 1.25 NA Intergenic Intergenic -2819 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 163-52 chr8 91677680 91677857 + 1.25 NA Intergenic Intergenic 339912 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 228.25-5 chr1 213651831 213652098 + 1.25 NA Intergenic Intergenic -272785 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 165.5-34 chr16 11488459 11488671 + 1.25 NA intron (NM_001370704, intron 14 of 66) AluJb|SINE|Alu 23305 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 184.5-5 chr1 229927900 229928121 + 1.25 NA Intergenic MER2|DNA|TcMar-Tigger -34102 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 163.75-32 chr2 121420881 121421035 + 1.25 NA intron (NM_015282, intron 22 of 38) intron (NM_015282, intron 22 of 38) -109922 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 191-36 chr3 150605899 150606088 + 1.25 NA intron (NM_016275, intron 1 of 5) intron (NM_016275, intron 1 of 5) 2672 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 151-43 chr3 126038769 126038891 + 1.25 NA intron (NM_001008486, intron 2 of 10) MSTB|LTR|ERVL-MaLR 17945 NM_001008487 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 157.25-38 chr2 71955398 71955655 + 1.25 NA Intergenic L1MC1|LINE|L1 192336 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 201.25-39 chr7 92866838 92867039 + 1.25 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -30311 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 125.25-11 chr10 115114372 115114516 + 1.25 NA intron (NR_074088, intron 2 of 9) L1MA7|LINE|L1 21079 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 243.75-6 chr11 74273323 74273604 + 1.25 NA intron (NR_110031, intron 9 of 11) intron (NR_110031, intron 9 of 11) -37899 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 245.5-5 chr11 72691048 72691324 + 1.25 NA intron (NR_161388, intron 25 of 29) MIRc|SINE|MIR -9288 NR_146780 100506020 Hs.503165 NR_146780 ENSG00000245148 ARAP1-AS2 - ARAP1 antisense RNA 2 ncRNA 138.75-67 chr6 154128578 154128876 + 1.25 NA non-coding (NR_104348, exon 5 of 5) non-coding (NR_104348, exon 5 of 5) 38965 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 196.5-74 chr8 120197341 120197583 + 1.25 NA intron (NM_021110, intron 6 of 47) intron (NM_021110, intron 6 of 47) 72360 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 213.25-30 chr3 97119968 97120297 + 1.25 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 305538 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 220.5-39 chr6 96280912 96281154 + 1.25 NA Intergenic L1M5|LINE|L1 -240773 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 126.75-86 chr6 120318494 120318637 + 1.25 NA Intergenic HAL1|LINE|L1 303386 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 153.5-37 chr17 34327678 34327896 + 1.25 NA Intergenic L1M5|LINE|L1 8352 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 263.5-15 chr2 141511554 141511944 + 1.25 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 619952 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 158-60 chr7 47752413 47752636 + 1.25 NA Intergenic L1MC4|LINE|L1 -8952 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 193.75-22 chr2 55968928 55969315 + 1 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) 13955 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 157.75-19 chr11 80846168 80846504 + 1 NA Intergenic Intergenic -83533 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 116.75-74 chr7 40010802 40010929 + 1 NA intron (NM_003718, intron 5 of 13) L1MB3|LINE|L1 60505 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 160.25-15 chr12 49432886 49433131 + 1 NA intron (NM_001293285, intron 3 of 14) L1MB2|LINE|L1 43834 NR_033267 100335030 Hs.687044 NR_033267 LOC100335030 - FGFR1 oncogene partner 2 pseudogene pseudo 155.25-41 chr22 35663250 35663486 + 1 NA 3' UTR (NM_030641, exon 3 of 3) 3' UTR (NM_030641, exon 3 of 3) 14922 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 131.25-57 chr3 51554114 51554272 + 1 NA intron (NM_001322253, intron 3 of 23) AluSx|SINE|Alu 12604 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 222.75-34 chr4 169221483 169221720 + 1 NA intron (NM_020870, intron 2 of 11) intron (NM_020870, intron 2 of 11) 49355 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 179.75-39 chr4 42403313 42403608 + 1 NA TTS (NM_001080505) TTS (NM_001080505) 5972 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 216.25-41 chr8 100079913 100080384 + 1 NA exon (NM_001286693, exon 4 of 26) exon (NM_001286693, exon 4 of 26) 25478 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 242.5-26 chr3 120336500 120336823 + 1 NA intron (NM_001099678, intron 1 of 3) intron (NM_001099678, intron 1 of 3) 12693 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 131.75-4 chr1 48017888 48018084 + 1 NA Intergenic Intergenic -20601 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 126.25-40 chr2 28768343 28768510 + 1 NA intron (NM_206876, intron 2 of 8) L1ME3|LINE|L1 16596 NM_002709 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|NSLH2|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 315.25 chr1 181408086 181408455 + 1 NA Intergenic Intergenic -75247 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 132.5-57 chr2 181154383 181154599 + 1 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 30654 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 140.5-102 chr6 140267736 140267909 + 1 NA Intergenic L1MEf|LINE|L1 62570 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 186.5-57 chr8 125480265 125480475 + 1 NA Intergenic L2a|LINE|L2 48161 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 140.5-89 chr5 162313114 162313418 + 1 NA Intergenic L1ME1|LINE|L1 245624 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 208.5-37 chr19 38595419 38595770 + 1 NA promoter-TSS (NR_134907) promoter-TSS (NR_134907) -753 NR_134907 105372397 Hs.570011 NR_134907 ENSG00000267291 LOC105372397 - uncharacterized LOC105372397 ncRNA 219.75-31 chr5 22760749 22761257 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 92341 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 158.5-40 chr16 9738084 9738274 + 1 NA Intergenic L2a|LINE|L2 -282674 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 169.5-37 chr2 13056446 13056628 + 1 NA Intergenic Intergenic -49524 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 132.75-80 chr5 147856348 147856561 + 1 NA Intergenic Intergenic -17223 NM_003122 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 121.5-7 chr1 182505230 182505431 + 1 NA intron (NM_001366934, intron 10 of 22) L1M4|LINE|L1 55184 NM_001366934 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 173.75-21 chr2 77424115 77424377 + 1 NA intron (NR_146416, intron 1 of 1) (ATTGTT)n|Simple_repeat|Simple_repeat 98130 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 139.75-12 chr10 71444364 71444683 + 1 NA intron (NM_052836, intron 2 of 12) L2c|LINE|L2 47589 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 161.5-79 chr6 141391592 141391908 + 1 NA Intergenic Intergenic 697049 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 204.25-49 chr7 80732487 80732858 + 1 NA Intergenic Intergenic 86019 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 146.5-94 chr9 24168013 24168256 + 1 NA Intergenic L1MA8|LINE|L1 -317533 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 170.5-81 chr8 47829745 47829976 + 1 NA intron (NM_001081640, intron 61 of 84) L1P4|LINE|L1 -91696 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 121.25-28 chr16 59285766 59286001 + 1 NA Intergenic L1MA4A|LINE|L1 469308 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 165.5-74 chr6 73685896 73686163 + 1 NA Intergenic L1MA9|LINE|L1 -10056 NM_001159588 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 169.25-5 chr1 228428937 228429241 + 1 NA Intergenic Intergenic -3764 NM_003493 8290 Hs.248171 NM_003493 ENSG00000168148 HIST3H3 H3.4|H3/g|H3FT|H3t histone cluster 3 H3 protein-coding 176.75-17 chr17 71159691 71160003 + 1 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 42332 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 210.25-40 chr6 34742308 34742644 + 1 NA Intergenic L1ME4b|LINE|L1 -14618 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 183.25-29 chr3 63902435 63902858 + 1 NA intron (NM_001177387, intron 1 of 12) intron (NM_001177387, intron 1 of 12) 4247 NM_001177387 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 119.75-2 chr1 178454498 178454709 + 1 NA exon (NM_170692, exon 12 of 18) exon (NM_170692, exon 12 of 18) -58506 NM_001170724 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 261.75-31 chr8 130605927 130606348 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -162463 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 236.25-17 chr2 110651059 110651335 + 1 NA intron (NM_001278616, intron 16 of 23) intron (NM_001278616, intron 16 of 23) 7052 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 147.75-26 chr15 25837538 25837714 + 1 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 11199 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 175.5-5 chr1 165655583 165655868 + 1 NA 3' UTR (NM_004528, exon 6 of 6) 3' UTR (NM_004528, exon 6 of 6) 24491 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 184.25-41 chr6 1495123 1495409 + 1 NA Intergenic Intergenic -104855 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 256.5-2 chr10 25762710 25763042 + 1 NA Intergenic MER41E|LTR|ERV1 111164 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 285.5-11 chr4 38536041 38536435 + 1 NA Intergenic Intergenic -13058 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 116.5-28 chr12 115057540 115057792 + 1 NA Intergenic L1M4|LINE|L1 -373491 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 255.75-28 chr9 100725383 100725903 + 1 NA Intergenic Intergenic 147564 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 114.5-91 chr6 132556947 132557138 + 1 NA Intergenic L1PB2|LINE|L1 4358 NM_053278 83551 Hs.350571 NM_053278 ENSG00000146385 TAAR8 GPR102|TA5|TAR5|TRAR5|TaR-5|TaR-8 trace amine associated receptor 8 protein-coding 114.25-2 chr1 56198617 56198908 + 1 NA Intergenic Intergenic -216201 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 172.5-76 chr6 158162031 158162441 + 1 NA intron (NM_032861, intron 1 of 16) MIR|SINE|MIR 6026 NR_073096 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 151.5-12 chr10 59560959 59561285 + 1 NA Intergenic Intergenic 148769 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 274.5-29 chr5 32951368 32951785 + 1 NA intron (NR_033832, intron 3 of 5) intron (NR_033832, intron 3 of 5) 4133 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 219.5-47 chr7 51988451 51988840 + 1 NA Intergenic Intergenic -595389 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 153.5-93 chr8 116117187 116117403 + 1 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 207764 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 151.5-16 chr11 82490207 82490474 + 1 NA Intergenic L1PB2|LINE|L1 -86427 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 167.5-55 chr3 117701381 117701684 + 1 NA Intergenic Intergenic -10607 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 187.25-11 chr10 54130948 54131273 + 1 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -355120 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 135.25-49 chr2 134488772 134488907 + 1 NA intron (NM_030923, intron 5 of 7) L1ME3G|LINE|L1 230161 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 170.25-8 chr10 110093699 110094066 + 1 NA intron (NM_001121, intron 1 of 13) MER44A|DNA|TcMar-Tigger -85501 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 263.75-18 chr8 80297702 80298283 + 1 NA Intergenic Intergenic 56603 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 117.25-6 chr1 115772720 115772918 + 1 NA Intergenic AluSx|SINE|Alu -4014 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 193.5-37 chr3 12014837 12015110 + 1 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 10582 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 137.25-35 chr15 85121719 85121870 + 1 NA intron (NM_001243137, intron 18 of 21) L1MB8|LINE|L1 112987 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 134.5-97 chr8 126880794 126880945 + 1 NA Intergenic Intergenic -132285 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 144.5-106 chr8 116288241 116288467 + 1 NA intron (NR_046215, intron 1 of 13) AluSc8|SINE|Alu 36705 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 150.25-54 chr3 136822738 136822908 + 1 NA intron (NM_025246, intron 1 of 1) L1MA2|LINE|L1 3697 NM_025246 80723 Hs.477692 NM_025246 ENSG00000168917 SLC35G2 TMEM22 solute carrier family 35 member G2 protein-coding 117.25-54 chr22 44970174 44970336 + 1 NA intron (NM_001284296, intron 2 of 13) intron (NM_001284296, intron 2 of 13) 33364 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 191.5-55 chr5 80724384 80724611 + 1 NA intron (NM_002439, intron 8 of 23) intron (NM_002439, intron 8 of 23) -69514 NM_001290357 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 137.25-30 chr14 66725217 66725415 + 1 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 217909 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 168.75-29 chr20 37030072 37030420 + 1 NA intron (NM_002895, intron 16 of 21) L1MB3|LINE|L1 65751 NM_001323282 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 129.5-11 chr10 21415716 21415919 + 1 NA Intergenic Intergenic -42867 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 239.25-27 chr6 145482080 145482416 + 1 NA Intergenic Intergenic 204629 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 117.75-40 chr2 156812962 156813151 + 1 NA Intergenic Intergenic 376677 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 138.5-75 chr3 153576148 153576306 + 1 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 91732 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 254.5-11 chr17 32839824 32840094 + 1 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 37165 NM_015194 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 205.25-3 chr1 222184511 222184756 + 1 NA Intergenic L2c|LINE|L2 -206113 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 218.75-37 chr7 26170126 26170406 + 1 NA intron (NM_004289, intron 1 of 3) intron (NM_004289, intron 1 of 3) 18068 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 176.5-78 chr6 152979156 152979399 + 1 NA intron (NM_001142522, intron 1 of 4) L1MC3|LINE|L1 3764 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 172.5-45 chr3 38795479 38795787 + 1 NA Intergenic L2b|LINE|L2 -1623 NM_006514 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 168.5-75 chr8 126290062 126290373 + 1 NA Intergenic Intergenic -35278 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 230.5-17 chr14 46559362 46559628 + 1 NA Intergenic Intergenic 88136 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 154.5-47 chr20 37349946 37350251 + 1 NA intron (NM_198291, intron 1 of 13) intron (NM_198291, intron 1 of 13) 3970 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 212.5-28 chr2 194457469 194457738 + 1 NA Intergenic Intergenic 113334 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 139.75-43 chr2 136143840 136144092 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie -25811 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 121.5-21 chr11 8613356 8613589 + 1 NA 3' UTR (NM_014818, exon 20 of 20) 3' UTR (NM_014818, exon 20 of 20) -19244 NM_001352392 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 168.25-48 chr4 145525718 145525995 + 1 NA intron (NM_005900, intron 2 of 6) intron (NM_005900, intron 2 of 6) -8662 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 158.5-31 chr13 111602469 111602718 + 1 NA intron (NR_135814, intron 1 of 1) intron (NR_135814, intron 1 of 1) 6584 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 326.75-7 chr2 155181499 155182045 + 1 NA Intergenic Intergenic 483077 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 164.25-53 chr6 92420508 92420743 + 1 NA Intergenic MamRTE1|LINE|RTE-BovB -730197 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 144.5-28 chr12 55757002 55757209 + 1 NA TTS (NM_033082) TTS (NM_033082) 13983 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 114.75-67 chr4 21085174 21085377 + 1 NA intron (NM_147182, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR -101266 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 273.5-9 chr17 33111955 33112455 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 119354 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 138.75-22 chr14 85292296 85292492 + 1 NA Intergenic Tigger15a|DNA|TcMar-Tigger 20462 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 130.25-12 chr10 43760139 43760335 + 1 NA Intergenic Intergenic 18588 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 189.25-38 chr5 92031238 92031526 + 1 NA Intergenic Intergenic -648065 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 228.25-42 chr9 23966700 23967014 + 1 NA Intergenic L1P3|LINE|L1 -116256 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 182.5-77 chrX 83344275 83344731 + 1 NA Intergenic Intergenic -163787 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 177.75-17 chr16 65202231 65202466 + 1 NA Intergenic Intergenic -25775 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 214.75-35 chr7 49275190 49275455 + 1 NA Intergenic Intergenic 350775 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 127.5-29 chr12 81218812 81219010 + 1 NA intron (NM_024560, intron 10 of 15) (TATAA)n|Simple_repeat|Simple_repeat -60278 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 122.5-72 chr5 78641047 78641197 + 1 NA intron (NM_005779, intron 1 of 4) intron (NM_005779, intron 1 of 4) 7650 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 171.5-61 chr4 129107023 129107398 + 1 NA intron (NM_001099783, intron 3 of 5) intron (NM_001099783, intron 3 of 5) 11058 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 134.25-7 chr10 61327782 61328161 + 1 NA Intergenic L1MC1|LINE|L1 -124668 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 155.5-62 chr20 35240320 35240502 + 1 NA intron (NM_001355008, intron 2 of 14) intron (NM_001355008, intron 2 of 14) 13721 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 205.75-11 chr14 33867645 33867962 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR 83271 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 148.75-37 chr2 162043610 162043811 + 1 NA intron (NM_001935, intron 5 of 25) MER5B|DNA|hAT-Charlie 30505 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 180.5-89 chr8 107535527 107535925 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -37808 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 146.75-66 chr9 31448203 31448369 + 1 NA Intergenic Intergenic -66796 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 156.5-39 chr2 229350016 229350323 + 1 NA Intergenic Intergenic -78882 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 156.75-91 chr9 28696295 28696654 + 1 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 22831 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 123.75-95 chr6 153930445 153930632 + 1 NA Intergenic L1M4|LINE|L1 -79958 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 176.25-4 chr1 209726124 209726499 + 1 NA intron (NM_181755, intron 5 of 6) intron (NM_181755, intron 5 of 6) -2186 NR_134509 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 198.5-22 chr2 61521303 61521594 + 1 NA intron (NM_003400, intron 4 of 24) intron (NM_003400, intron 4 of 24) 16908 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 128.75-7 chr10 65298845 65299064 + 1 NA Intergenic Intergenic -272471 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 159.75-70 chr8 142065677 142065944 + 1 NA Intergenic Intergenic -110529 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 189.75-17 chr18 58112800 58113018 + 1 NA intron (NM_001144964, intron 1 of 30) MLT1A0|LTR|ERVL-MaLR -36411 NM_001144968 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 174.5-15 chr11 88449630 88449814 + 1 NA Intergenic L1MA3|LINE|L1 -54854 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 161.25-61 chr4 173849295 173849492 + 1 NA Intergenic MLT2A2|LTR|ERVL -47880 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 240.5-43 chr7 15145523 15145784 + 1 NA Intergenic Intergenic -170795 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 121.25-39 chr2 237176286 237176421 + 1 NA Intergenic Intergenic 90464 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 166.75-21 chr15 61286323 61286784 + 1 NA Intergenic L1MA4A|LINE|L1 -57251 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 120.75-91 chr6 162645174 162645379 + 1 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -81856 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 116.5-83 chr3 124151271 124151410 + 1 NA intron (NM_001024660, intron 1 of 59) L1ME3A|LINE|L1 18411 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 163.5-9 chr1 229354833 229355064 + 1 NA Intergenic L1MB3|LINE|L1 -11901 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 141.5-78 chr3 110425627 110425887 + 1 NA Intergenic Intergenic 644202 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 266.25-6 chr14 40797657 40798025 + 1 NA Intergenic L2|LINE|L2 -156870 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 205.5-30 chr20 1966128 1966373 + 1 NA non-coding (NR_134520, exon 3 of 4) non-coding (NR_134520, exon 3 of 4) 19040 NR_134520 727993 Hs.551466 NR_134520 ENSG00000233896 PDYN-AS1 - PDYN antisense RNA 1 ncRNA 143.75-74 chr6 80940295 80940510 + 1 NA Intergenic Intergenic 812279 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 185.75-24 chr15 64070190 64070526 + 1 NA Intergenic MER39|LTR|ERV1 23480 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 188.75-40 chr6 79116878 79117162 + 1 NA Intergenic L1MEc|LINE|L1 -38766 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 204.75 chr1 178720117 178720587 + 1 NA Intergenic AluSq|SINE|Alu -4795 NM_001286247 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 188.75-19 chr2 20059729 20059928 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -8200 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 306.5 chr1 215078304 215078821 + 1 NA intron (NM_001017424, intron 1 of 6) THE1D|LTR|ERVL-MaLR -4175 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 130.5-94 chr8 28952626 28952790 + 1 NA intron (NM_001324393, intron 2 of 11) L3|LINE|CR1 61394 NM_001324382 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 202.75-22 chr5 68599455 68599746 + 1 NA Intergenic Intergenic 307023 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 137.25-20 chr12 8857860 8858121 + 1 NA exon (NM_144670, exon 26 of 36) exon (NM_144670, exon 26 of 36) 12986 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 264.5-24 chr5 88722883 88723306 + 1 NA TTS (NR_146284) TTS (NR_146284) -32053 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 222.25 chr1 73664795 73665248 + 1 NA Intergenic Intergenic -9658 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 138.25-77 chr6 51465399 51465552 + 1 NA Intergenic Intergenic -156395 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 205.75-10 chr12 115613940 115614157 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 534606 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 166.5-89 chr5 116630975 116631254 + 1 NA Intergenic Intergenic -56291 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 173.5-46 chr2 105354815 105355060 + 1 NA Intergenic Intergenic 17397 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 194.25-7 chr10 99344481 99344823 + 1 NA intron (NM_020348, intron 1 of 10) intron (NM_020348, intron 1 of 10) 15296 NM_020348 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 168.5-76 chr9 14028189 14028559 + 1 NA Intergenic Intergenic 100403 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 134.25-38 chr2 86268727 86269005 + 1 NA intron (NM_001164731, intron 1 of 5) L1MC|LINE|L1 68760 NM_001371279 188.5-52 chr7 1655982 1656416 + 1 NA Intergenic MIR1_Amn|SINE|MIR -31920 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 197.5-2 chr1 39468347 39468659 + 1 NA intron (NM_012090, intron 89 of 92) intron (NM_012090, intron 89 of 92) -23133 NM_181809 353500 Hs.472497 NM_181809 ENSG00000183682 BMP8A - bone morphogenetic protein 8a protein-coding 221.25-4 chr11 81411812 81412058 + 1 NA Intergenic Intergenic 478901 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 113.75-62 chr20 3626428 3626684 + 1 NA intron (NM_139321, intron 25 of 28) L1M5|LINE|L1 36843 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 202.25-4 chr1 177621263 177621514 + 1 NA Intergenic Intergenic -79136 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 193.5-19 chr14 20708731 20708940 + 1 NA Intergenic PABL_B-int|LTR|ERV1 20071 NM_001097577 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 277.75-10 chr4 17195046 17195472 + 1 NA Intergenic AluSx1|SINE|Alu -9202 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 185.5-30 chr15 71513562 71513787 + 1 NA intron (NM_024817, intron 6 of 16) L1ME2|LINE|L1 -33562 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 207.25-16 chr3 27822952 27823372 + 1 NA intron (NR_146630, intron 2 of 4) Charlie1a|DNA|hAT-Charlie 10974 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 124.75-21 chr12 41893095 41893236 + 1 NA Intergenic Intergenic 128976 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 147.5-64 chr4 70256745 70256930 + 1 NA Intergenic Intergenic 14221 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 214.5-47 chr4 147719706 147720087 + 1 NA Intergenic L1MB4|LINE|L1 -12192 NM_024605 79658 Hs.368631 NM_024605 ENSG00000071205 ARHGAP10 GRAF2|PS-GAP|PSGAP Rho GTPase activating protein 10 protein-coding 118.5-76 chr4 44262845 44263026 + 1 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 185874 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 125.25-87 chrX 41878214 41878532 + 1 NA intron (NM_003688, intron 1 of 26) MER65A|LTR|ERV1 44661 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 241.5-29 chr4 122311283 122311670 + 1 NA intron (NM_015312, intron 57 of 83) intron (NM_015312, intron 57 of 83) -67535 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 228.75-21 chr19 39529782 39530129 + 1 NA Intergenic AluSg4|SINE|Alu 2897 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 192.5-58 chr8 112435570 112435864 + 1 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -207776 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 115.5-47 chr2 113811162 113811374 + 1 NA Intergenic Intergenic -54626 NM_025181 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 126.5-81 chr4 69480306 69480507 + 1 NA 3' UTR (NM_001297615, exon 5 of 5) 3' UTR (NM_001297615, exon 5 of 5) 15499 NM_021139 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 117.25-30 chr14 76753125 76753343 + 1 NA Intergenic MIR|SINE|MIR -8234 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 119.5-9 chr1 224870963 224871172 + 1 NA Intergenic L1MA4A|LINE|L1 -58587 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 157.5-14 chr11 106079120 106079398 + 1 NA intron (NM_015423, intron 1 of 5) intron (NM_015423, intron 1 of 5) -1521 NM_001330359 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 266.5-20 chr5 37401352 37401763 + 1 NA intron (NM_001345998, intron 5 of 17) AluSx|SINE|Alu 22239 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 268.25-2 chr1 209680576 209681198 + 1 NA intron (NR_134510, intron 1 of 2) Tigger3a|DNA|TcMar-Tigger -5293 NM_001206741 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 154.25-29 chr14 82392064 82392368 + 1 NA Intergenic Intergenic -250416 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 179.5-103 chrX 69782925 69783177 + 1 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 166938 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 197.5-25 chr17 31913999 31914259 + 1 NA Intergenic L1ME3G|LINE|L1 -12421 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 229.5-41 chr5 109028097 109028428 + 1 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 103656 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 186.25-44 chr5 149603751 149604068 + 1 NA intron (NM_001001669, intron 3 of 12) AluSx|SINE|Alu 22411 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 150.5-75 chr5 125755505 125755789 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 262386 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 124.75 chr1 12594337 12594527 + 1 NA intron (NM_004753, intron 1 of 5) L2a|LINE|L2 2181 NM_001324370 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 123.75-96 chr6 163191546 163191726 + 1 NA intron (NR_122120, intron 1 of 3) intron (NR_122120, intron 1 of 3) 366 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 165.25-57 chr9 8299300 8299530 + 1 NA Intergenic Intergenic 434531 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 148.5-32 chr16 78340350 78340587 + 1 NA intron (NM_001291997, intron 4 of 7) AluSx|SINE|Alu 240814 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 194.5-23 chr16 89028028 89028292 + 1 NA Intergenic L1MEc|LINE|L1 -50953 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 126.5-102 chr6 62715286 62715467 + 1 NA Intergenic L1MDa|LINE|L1 -429149 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 194.5-63 chr6 71770586 71770907 + 1 NA Intergenic HAL1|LINE|L1 -115957 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 142.75-28 chr14 86923505 86923812 + 1 NA TTS (NR_038445) TTS (NR_038445) 17880 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 185.5-29 chr14 83130565 83130871 + 1 NA Intergenic L3|LINE|CR1 488086 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 241.75-20 chr3 119922563 119922864 + 1 NA intron (NM_002093, intron 4 of 11) intron (NM_002093, intron 4 of 11) 140003 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 153.25-32 chr20 60272215 60272527 + 1 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -36103 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 201.25-28 chr4 59169039 59169385 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 155639 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 146.5-98 chr9 110458707 110458860 + 1 NA intron (NM_153366, intron 19 of 47) intron (NM_153366, intron 19 of 47) -120899 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 134.75-58 chr5 94478687 94478939 + 1 NA intron (NM_001145678, intron 6 of 20) intron (NM_001145678, intron 6 of 20) 139791 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 247.25-5 chr11 47400940 47401188 + 1 NA promoter-TSS (NR_039707) promoter-TSS (NR_039707) 94 NR_039707 100616222 NR_039707 ENSG00000264583 MIR4487 mir-4487 microRNA 4487 ncRNA 263.5-22 chr3 104857939 104858213 + 1 NA Intergenic Intergenic -508637 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 188.75-5 chr12 13554162 13554547 + 1 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -177609 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 152.5-89 chr5 167891466 167891695 + 1 NA intron (NM_001368145, intron 2 of 26) intron (NM_001368145, intron 2 of 26) 136651 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 121.25-43 chr3 13083819 13084092 + 1 NA Intergenic Intergenic -10526 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 145.75-26 chr18 21692678 21692929 + 1 NA intron (NM_138340, intron 3 of 8) intron (NM_138340, intron 3 of 8) 9285 NR_031565 100302135 NR_031565 ENSG00000221493 MIR320C1 MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1 microRNA 320c-1 ncRNA 133.75-78 chr8 135553512 135553705 + 1 NA intron (NM_006558, intron 4 of 8) L1ME4b|LINE|L1 96152 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 153.25-40 chr4 61197289 61197562 + 1 NA Intergenic L1M5|LINE|L1 -3805 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 155.75-3 chr1 38174748 38175033 + 1 NA Intergenic MIR|SINE|MIR 39877 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 142.25 chr1 32707734 32707901 + 1 NA Intergenic LTR33|LTR|ERVL -5047 NM_001161708 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 228.5-3 chr10 105198021 105198394 + 1 NA intron (NM_014978, intron 14 of 26) L3|LINE|CR1 -531991 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 123.5-74 chr4 46628742 46628890 + 1 NA Intergenic Intergenic -238688 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 181.5-27 chr18 8101286 8101815 + 1 NA intron (NM_002845, intron 11 of 30) MIRc|SINE|MIR 265484 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 148.25-25 chr16 54953722 54953975 + 1 NA Intergenic MER102c|DNA|hAT-Charlie 22649 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 129.75-81 chr8 121343891 121344169 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -295316 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 264.5-22 chr4 33054712 33054989 + 1 NA Intergenic MER75|DNA|PiggyBac 703812 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 200.25-46 chr7 92789814 92790167 + 1 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 43969 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 137.75-11 chr10 111299665 111299947 + 1 NA Intergenic Intergenic 185515 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 141.75-5 chr1 239218999 239219147 + 1 NA Intergenic Intergenic -167495 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 131.25-88 chr8 131106841 131107155 + 1 NA Intergenic L2-1_AMi|LINE|L2 -66089 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 169.75-27 chr17 53234813 53235029 + 1 NA Intergenic Intergenic 249416 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 174.25-49 chr5 132726794 132727207 + 1 NA intron (NM_007054, intron 2 of 16) MIRb|SINE|MIR 10546 NM_001300791 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 133.75-51 chr20 52825013 52825281 + 1 NA Intergenic Intergenic -147211 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 144.5-8 chr1 205342336 205342568 + 1 NA intron (NM_001271865, intron 4 of 7) L2a|LINE|L2 14470 NM_018203 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 152.75-48 chr4 42988873 42989052 + 1 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 95696 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 136.5-105 chr8 89246484 89246659 + 1 NA Intergenic L1MA4A|LINE|L1 511140 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 178.5-79 chr7 112233355 112233545 + 1 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 26755 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 144.5-63 chr20 43268240 43268412 + 1 NA Intergenic Intergenic -78420 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 282.25-11 chr22 28082581 28083056 + 1 NA intron (NM_001145418, intron 12 of 22) L1MB2|LINE|L1 -162206 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 179.5-76 chr5 44687763 44688096 + 1 NA Intergenic Intergenic 120864 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 202.25-35 chr5 113552126 113552358 + 1 NA intron (NM_001345975, intron 11 of 28) L1MB8|LINE|L1 38548 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 149.75-47 chr4 100825952 100826221 + 1 NA Intergenic Intergenic -150973 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 194.5-16 chr12 60205084 60205591 + 1 NA Intergenic Intergenic 515967 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 213.5-38 chr5 16011838 16012158 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 76816 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 271.5-17 chr3 84504702 84505097 + 1 NA Intergenic Intergenic 364676 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 182.75 chr1 28011718 28011998 + 1 NA intron (NM_001282562, intron 8 of 16) intron (NM_001282562, intron 8 of 16) 52396 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 206.5-34 chr22 25715695 25715935 + 1 NA intron (NM_001362778, intron 17 of 19) intron (NM_001362778, intron 17 of 19) -26373 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 162.25-6 chr13 36244668 36245030 + 1 NA intron (NM_001144981, intron 7 of 7) MER68|LTR|ERVL -30234 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 133.25-62 chr4 188564298 188564692 + 1 NA intron (NR_033869, intron 4 of 4) intron (NR_033869, intron 4 of 4) 108917 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 267.5-28 chr6 47320234 47320663 + 1 NA Intergenic Intergenic -10543 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 173.75-45 chr6 155640255 155640598 + 1 NA Intergenic Intergenic 125582 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 199.75-11 chr15 89101179 89101510 + 1 NA intron (NM_007011, intron 2 of 14) intron (NM_007011, intron 2 of 14) 12888 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 129.75-60 chr4 174769708 174769933 + 1 NA intron (NM_006529, intron 2 of 9) HAL1|LINE|L1 59427 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 203.5 chr1 15721527 15721808 + 1 NA intron (NM_015164, intron 7 of 19) intron (NM_015164, intron 7 of 19) -14591 NM_207348 284723 Hs.631867 NM_207348 ENSG00000162461 SLC25A34 - solute carrier family 25 member 34 protein-coding 123.5-37 chr14 98603851 98604064 + 1 NA Intergenic Intergenic -107656 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 302.5-6 chr19 55086030 55086466 + 1 NA intron (NM_017729, intron 11 of 14) intron (NM_017729, intron 11 of 14) 5856 NM_017729 54869 Hs.438862 NM_017729 ENSG00000131037 EPS8L1 DRC3|EPS8R1|PP10566 EPS8 like 1 protein-coding 147.25-50 chr5 12792134 12792395 + 1 NA intron (NR_033383, intron 3 of 3) intron (NR_033383, intron 3 of 3) 124405 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 118.5-100 chr7 8630510 8630782 + 1 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 197037 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 154.5-42 chr2 125201142 125201453 + 1 NA Intergenic Intergenic 916688 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 171.75-31 chr2 198838906 198839222 + 1 NA Intergenic Intergenic -463967 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 125.5-106 chr5 66263732 66263876 + 1 NA Intergenic Intergenic -54358 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 308.75-3 chr15 88135848 88136373 + 1 NA intron (NM_001007156, intron 8 of 15) intron (NM_001007156, intron 8 of 15) 69864 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 123.75-20 chr10 131521444 131521692 + 1 NA Intergenic Intergenic -209847 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 213.25-23 chr2 161442394 161442715 + 1 NA Intergenic Intergenic 26257 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 116.5-19 chr11 81354877 81355065 + 1 NA Intergenic Intergenic 535865 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 145.75-75 chr8 124305226 124305407 + 1 NA Intergenic L1PB4|LINE|L1 -57918 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 192.5-43 chr3 121971838 121972056 + 1 NA Intergenic LTR9D|LTR|ERV1 50300 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 130.25-85 chr8 95264456 95264732 + 1 NA intron (NM_001363260, intron 1 of 4) intron (NM_001363260, intron 1 of 4) -4242 NR_038208 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 157.5-76 chr4 58765503 58765798 + 1 NA Intergenic Intergenic -218632 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 157.75-55 chr4 10421938 10422251 + 1 NA Intergenic MER68|LTR|ERVL 35332 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 174.5-37 chr19 45661965 45662248 + 1 NA Intergenic AluSx1|SINE|Alu -6115 NM_001308418 2696 Hs.251412 NM_000164 ENSG00000010310 GIPR PGQTL2 gastric inhibitory polypeptide receptor protein-coding 197.5-58 chr8 82610881 82611195 + 1 NA Intergenic L1PA16|LINE|L1 -301066 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 141.5-39 chr16 63510194 63510462 + 1 NA Intergenic L1MA10|LINE|L1 -1473890 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 185.5-15 chr11 26779569 26780000 + 1 NA Intergenic Intergenic -57724 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 133.5-88 chr5 25488062 25488292 + 1 NA Intergenic LOR1a|LTR|ERV1 297224 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 222.5-49 chr9 6015186 6015486 + 1 NA exon (NM_012416, exon 1 of 1) exon (NM_012416, exon 1 of 1) 288 NM_001243202 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 248.5-18 chr22 35570549 35571008 + 1 NA Intergenic Intergenic 29947 NM_014310 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 177.5-55 chr5 102202552 102202852 + 1 NA Intergenic L1PA10|LINE|L1 93582 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 152.75-33 chr2 175251178 175251455 + 1 NA Intergenic Intergenic -69606 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 157.25-46 chr21 32273532 32273720 + 1 NA intron (NM_018944, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 5423 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 122.25-52 chr2 68506928 68507239 + 1 NA intron (NM_173545, intron 3 of 9) L1ME3Cz|LINE|L1 39498 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 160.75-29 chr18 32570006 32570195 + 1 NA Intergenic MER77B|LTR|ERVL 58437 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 218.25-25 chr17 29713408 29713788 + 1 NA intron (NM_033389, intron 2 of 14) intron (NM_033389, intron 2 of 14) 47834 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 169.75-3 chr10 31678466 31678745 + 1 NA Intergenic Intergenic 230321 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 185.5-48 chr3 29203057 29203426 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR 77698 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 126.25-60 chr3 112514023 112514194 + 1 NA Intergenic MER4-int|LTR|ERV1 -14636 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 181.25-8 chr10 97408398 97408654 + 1 NA Intergenic AluSp|SINE|Alu -7156 NM_001145114 23223 Hs.434251 NM_015179 ENSG00000052749 RRP12 KIAA0690 ribosomal RNA processing 12 homolog protein-coding 127.75-11 chr10 59650307 59650462 + 1 NA TTS (NM_001323978) TTS (NM_001323978) 59507 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 204.25-21 chr17 34555776 34556089 + 1 NA Intergenic Intergenic 23437 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 116.5-89 chr5 38829680 38829864 + 1 NA intron (NR_109951, intron 1 of 3) MER34A|LTR|ERV1 16057 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 148.75-24 chr16 83088335 83088508 + 1 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -98123 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 175.5-60 chr5 113371840 113372174 + 1 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) 62982 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 123.75-59 chr20 14001826 14001969 + 1 NA intron (NM_001351663, intron 1 of 17) MSTA|LTR|ERVL-MaLR 6381 NM_001351663 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 182.5-48 chr4 29240952 29241228 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 26798 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 242.5-6 chr12 28649147 28649591 + 1 NA Intergenic L1MCa|LINE|L1 -458631 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 172.25 chr1 95326773 95326984 + 1 NA Intergenic L1PB1|LINE|L1 -8615 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 134.75-6 chr1 176176403 176176562 + 1 NA intron (NM_022457, intron 2 of 19) L1ME4a|LINE|L1 30762 NM_001001740 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 117.5-29 chr16 1866126 1866292 + 1 NA intron (NM_001163560, intron 2 of 13) intron (NM_001163560, intron 2 of 13) 5955 NM_152764 254528 Hs.729604 NM_152764 ENSG00000162039 MEIOB C16orf73|SPGF22|gs129 meiosis specific with OB-fold protein-coding 183.5-63 chr5 67718993 67719236 + 1 NA Intergenic L1ME3Cz|LINE|L1 -72325 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 296.5-7 chr11 103207883 103208375 + 1 NA intron (NM_001377, intron 52 of 88) L2a|LINE|L2 98703 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 122.75-3 chr1 68160341 68160491 + 1 NA intron (NM_001193334, intron 1 of 10) intron (NM_001193334, intron 1 of 10) 23194 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 131.5-3 chr1 115718754 115719057 + 1 NA intron (NM_001232, intron 7 of 10) intron (NM_001232, intron 7 of 10) 49900 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 189.75-37 chr4 123529119 123529399 + 1 NA Intergenic MamRTE1|LINE|RTE-BovB -120732 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 115.75-52 chr21 20644268 20644495 + 1 NA Intergenic Intergenic 158727 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 199.25-8 chr12 33308833 33309197 + 1 NA Intergenic LTR48B|LTR|ERV1 130804 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 133.5-35 chr15 69523955 69524242 + 1 NA Intergenic MLT1O|LTR|ERVL-MaLR -37622 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 137.5-102 chr6 141776002 141776452 + 1 NA Intergenic L1PA14|LINE|L1 312572 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 147.25-41 chr3 68417467 68417646 + 1 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -83081 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 179.25-2 chr1 156736368 156736760 + 1 NA TTS (NM_024540) TTS (NM_024540) 4524 NM_024540 79590 Hs.418233 NM_024540 ENSG00000143314 MRPL24 L24mt|MRP-L18|MRP-L24 mitochondrial ribosomal protein L24 protein-coding 157.25-19 chr12 47231426 47231631 + 1 NA intron (NM_138371, intron 3 of 3) MER34D|LTR|ERV1 -15085 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 162.5-5 chr1 100827845 100828071 + 1 NA Intergenic L1MCa|LINE|L1 66884 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 135.25-7 chr10 14185031 14185167 + 1 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 110815 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 220.5-47 chr8 81223508 81223838 + 1 NA Intergenic L1PB1|LINE|L1 -56863 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 137.5-42 chr16 66818152 66818379 + 1 NA intron (NM_001018159, intron 9 of 20) intron (NM_001018159, intron 9 of 20) 12711 NM_001018159 8883 Hs.460978 NM_003905 ENSG00000159593 NAE1 A-116A10.1|APPBP1|HPP1|ula-1 NEDD8 activating enzyme E1 subunit 1 protein-coding 187.5-52 chr3 149476525 149476815 + 1 NA intron (NM_004617, intron 2 of 4) intron (NM_004617, intron 2 of 4) 1973 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 223.5-40 chr2 181190189 181190596 + 1 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 66555 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 127.25-32 chr14 76044072 76044258 + 1 NA intron (NR_045664, intron 3 of 7) AluSz6|SINE|Alu 58402 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 159.75-6 chr10 39099963 39100382 + 1 NA Intergenic ALR/Alpha|Satellite|centr 403576 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 136.5-2 chr1 35300902 35301040 + 1 NA intron (NM_001350140, intron 2 of 27) L1MEc|LINE|L1 32262 NM_001350139 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 115.5-22 chr12 13629194 13629369 + 1 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -252536 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 114.25-15 chr10 125064030 125064200 + 1 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -31245 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 175.5-76 chr7 122907348 122907626 + 1 NA Intergenic MIR|SINE|MIR -20728 NM_001167940 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 235.5-16 chr12 59802864 59803124 + 1 NA Intergenic L1MC2|LINE|L1 113624 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 255.75-12 chr18 10741752 10742033 + 1 NA intron (NM_022068, intron 30 of 51) AluY|SINE|Alu 17757 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 122.5-77 chr5 133886257 133886535 + 1 NA Intergenic L2a|LINE|L2 -27281 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 145.25-62 chr5 9510514 9510680 + 1 NA promoter-TSS (NR_109935) promoter-TSS (NR_109935) -736 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 207.75-28 chr3 33745819 33746254 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie -27782 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 153.75-70 chr6 55088854 55089177 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR -17445 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 191.75-35 chr5 156593068 156593492 + 1 NA intron (NM_001128209, intron 4 of 7) MER90a|LTR|ERV1 -257015 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 214.5-49 chr5 54768405 54768754 + 1 NA Intergenic HERV16-int|LTR|ERVL -24321 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 167.25-72 chr7 2198381 2198605 + 1 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) 34452 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 157.5-27 chr14 63419132 63419322 + 1 NA intron (NR_104104, intron 3 of 12) Tigger12c|DNA|TcMar-Tigger 89011 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 187.75 chr1 41833433 41833715 + 1 NA intron (NM_024503, intron 1 of 8) MIRb|SINE|MIR 85348 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 115.5-6 chr10 16268544 16268783 + 1 NA Intergenic L1PA16|LINE|L1 -168280 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 181.25-3 chr10 16545557 16545831 + 1 NA Intergenic Intergenic -23815 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 254.5-21 chr4 102726340 102726839 + 1 NA exon (NM_005908, exon 2 of 17) exon (NM_005908, exon 2 of 17) 34379 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 137.75-81 chr7 129184318 129184549 + 1 NA Intergenic MIRc|SINE|MIR -4200 NM_005631 6608 Hs.437846 NM_005631 ENSG00000128602 SMO CRJS|FZD11|Gx|SMOH smoothened, frizzled class receptor protein-coding 152.75-36 chr20 16923850 16924107 + 1 NA Intergenic LTR16E2|LTR|ERVL 175625 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 171.5-42 chr2 86016374 86016693 + 1 NA Intergenic AluSg|SINE|Alu 89353 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 139.5-20 chr12 45993062 45993266 + 1 NA Intergenic Intergenic -2590 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 130.5-103 chr8 135214063 135214278 + 1 NA Intergenic Intergenic -19961 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 210.5-38 chr21 30634252 30634538 + 1 NA promoter-TSS (NM_181616) promoter-TSS (NM_181616) -811 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 158.25-68 chr8 96499571 96499885 + 1 NA intron (NM_002998, intron 1 of 4) intron (NM_002998, intron 1 of 4) 5915 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 165.75-4 chr10 21898179 21898489 + 1 NA intron (NM_022365, intron 7 of 11) Tigger3|DNA|TcMar-Tigger 105396 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 228.25-11 chr11 31418369 31418735 + 1 NA intron (NM_181706, intron 3 of 4) intron (NM_181706, intron 3 of 4) 48692 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 112.75-83 chr8 83944870 83945029 + 1 NA Intergenic Intergenic -237838 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 192.5-19 chr14 63361182 63361610 + 1 NA Intergenic L2a|LINE|L2 -42461 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 208.5-56 chr4 144511897 144512259 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X 133941 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 180.5-19 chr11 102023186 102023457 + 1 NA Intergenic Charlie15a|DNA|hAT-Charlie -24116 NM_032930 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 113.5-95 chr5 11983955 11984189 + 1 NA Intergenic Intergenic -79626 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 121.5-96 chr5 36577245 36577480 + 1 NA Intergenic L1MC4|LINE|L1 -28993 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 245.25-15 chr2 39261467 39261984 + 1 NA intron (NM_003618, intron 28 of 33) L1ME3B|LINE|L1 -17742 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 182.25-10 chr12 46673987 46674347 + 1 NA Intergenic Intergenic 151830 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 136.25-34 chr16 62322579 62322858 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -286280 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 130.5-92 chr7 124479775 124480002 + 1 NA Intergenic Intergenic -127792 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 295.25-16 chr6 90088873 90089227 + 1 NA 5' UTR (NM_001170794, exon 3 of 7) 5' UTR (NM_001170794, exon 3 of 7) 194581 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 122.5-66 chr5 7891347 7891545 + 1 NA intron (NR_157177, intron 10 of 14) intron (NR_157177, intron 10 of 14) 22298 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 151.5-62 chr5 31373207 31373493 + 1 NA Intergenic Intergenic 158743 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 178.5-6 chr1 246857675 246857907 + 1 NA exon (NM_001323342, exon 30 of 36) exon (NM_001323342, exon 30 of 36) 68174 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 184.75 chr1 33316562 33316746 + 1 NA intron (NM_001080438, intron 1 of 4) intron (NM_001080438, intron 1 of 4) 4444 NM_001080438 127550 NM_001080438 ENSG00000184389 A3GALT2 A3GALT2P|IGB3S|IGBS3S alpha 1,3-galactosyltransferase 2 protein-coding 244.5-3 chr1 196601363 196601731 + 1 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 6893 NR_146058 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 134.5-11 chr11 7205559 7205776 + 1 NA Intergenic MER21B|LTR|ERVL -29099 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 213.75-55 chrX 127944336 127944855 + 1 NA Intergenic L2a|LINE|L2 107808 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 184.25-54 chr8 117909291 117909495 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 11520 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 172.5-30 chr2 70781732 70781925 + 1 NA intron (NM_001004311, intron 3 of 4) L1MD2|LINE|L1 8815 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 174.75-54 chr8 88914493 88914697 + 1 NA Intergenic Intergenic -587112 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 165.5-56 chr21 22779416 22779707 + 1 NA Intergenic AluSz|SINE|Alu -299723 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 258.75-4 chr1 209376112 209376535 + 1 NA intron (NR_146491, intron 2 of 2) intron (NR_146491, intron 2 of 2) 4268 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 174.5-42 chr2 109165786 109166090 + 1 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -24350 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 171.25-6 chr11 26391897 26392111 + 1 NA intron (NM_031418, intron 1 of 26) LTR78|LTR|ERV1 59874 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 142.5-28 chr14 81068393 81068635 + 1 NA intron (NM_001142626, intron 3 of 8) intron (NM_001142626, intron 3 of 8) 112893 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 227.75-5 chr14 26368383 26368666 + 1 NA Intergenic L1ME3Cz|LINE|L1 184906 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 218.75-8 chr11 90608032 90608412 + 1 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -52365 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 232.5-26 chr3 81353702 81354096 + 1 NA Intergenic Intergenic 360031 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 138.75-72 chr8 3889153 3889400 + 1 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1105638 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 155.75-57 chr5 133064385 133064812 + 1 NA intron (NM_002154, intron 1 of 18) intron (NM_002154, intron 1 of 18) 12585 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 352.25-2 chr5 30532696 30533440 + 1 NA Intergenic Intergenic 652508 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 153.5-6 chr1 153482981 153483195 + 1 NA Intergenic Intergenic -22437 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 210.75-28 chr4 98129206 98129542 + 1 NA intron (NM_174952, intron 2 of 10) intron (NM_174952, intron 2 of 10) 14102 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 146.25-38 chr2 119891614 119891769 + 1 NA intron (NM_002830, intron 9 of 26) L1M2|LINE|L1 -121386 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 218.25-9 chr11 77286927 77287164 + 1 NA intron (NM_182833, intron 2 of 16) intron (NM_182833, intron 2 of 16) 14621 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 215.25-29 chr5 84565886 84566282 + 1 NA Intergenic Penelope1_Vert|LINE|Penelope -181204 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 161.5-39 chr16 85290939 85291180 + 1 NA Intergenic MIR|SINE|MIR 8101 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 130.5-110 chr9 80244642 80244886 + 1 NA Intergenic L1MB3|LINE|L1 269741 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 114.25-107 chr8 99394170 99394336 + 1 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 142477 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 208.25-29 chr4 138309845 138310253 + 1 NA intron (NR_051987, intron 1 of 2) Tigger6a|DNA|TcMar-Tigger 338 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 175.25-32 chr2 124220338 124220556 + 1 NA intron (NM_130773, intron 1 of 23) L2b|LINE|L2 195160 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 119.5-92 chr4 177550563 177550715 + 1 NA Intergenic Intergenic -108136 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 191.5-49 chr4 164760772 164761057 + 1 NA intron (NM_001352885, intron 1 of 2) L2a|LINE|L2 6783 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 164.75-64 chr7 25405100 25405302 + 1 NA Intergenic Intergenic -176715 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 133.5-6 chr1 79023301 79023479 + 1 NA Intergenic Intergenic -16660 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 169.5-56 chr4 46358158 46358432 + 1 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 31084 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 127.25-27 chr14 65853915 65854076 + 1 NA Intergenic Intergenic 382893 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 179.5-58 chr2 192644228 192644468 + 1 NA Intergenic Intergenic -105497 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 177.75-62 chr8 116891735 116892032 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR -17017 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 282.25-12 chr4 174169656 174169938 + 1 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 50601 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 156.5-56 chr5 15687477 15687654 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -72563 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 167.25-29 chr16 34582145 34582479 + 1 NA Intergenic Intergenic -200832 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 163.25-24 chr14 47321915 47322285 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 21146 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 122.25-57 chr2 215403376 215403685 + 1 NA intron (NM_212482, intron 20 of 45) intron (NM_212482, intron 20 of 45) 32538 NM_001365521 2335 Hs.203717 NM_002026 ENSG00000115414 FN1 CIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF fibronectin 1 protein-coding 115.5-71 chr5 25378441 25378564 + 1 NA Intergenic Intergenic 187549 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 208.25-19 chr20 56101439 56101850 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR -96125 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 122.25-2 chr1 65159055 65159279 + 1 NA intron (NM_001330616, intron 1 of 4) intron (NM_001330616, intron 1 of 4) 10173 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 207.5-30 chr2 142305293 142305690 + 1 NA Intergenic Intergenic -173790 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 132.5-94 chr5 133543460 133543661 + 1 NA intron (NM_015082, intron 3 of 15) L1ME3B|LINE|L1 68981 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 180.5 chr1 98466166 98466433 + 1 NA Intergenic Intergenic -195422 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 132.75-6 chr1 155102325 155102594 + 1 NA Intergenic L1MC5a|LINE|L1 23622 NM_004952 1944 Hs.516656 NM_004952 ENSG00000143590 EFNA3 EFL2|EPLG3|Ehk1-L|LERK3 ephrin A3 protein-coding 283.75-8 chr3 44681208 44681576 + 1 NA intron (NR_157564, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 4261 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 201.25-15 chr16 76857835 76858209 + 1 NA Intergenic L1PBa|LINE|L1 -10914 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 125.5-82 chr3 96731969 96732132 + 1 NA Intergenic Intergenic -82544 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 163.75-37 chr20 25654324 25654597 + 1 NA intron (NR_126465, intron 2 of 3) AluJb|SINE|Alu 30235 NR_126467 102724826 Hs.633621 NR_126465 ENSG00000213742 ZNF337-AS1 - ZNF337 antisense RNA 1 ncRNA 169.25-3 chr1 200762843 200763051 + 1 NA intron (NM_001297707, intron 2 of 17) AluSz|SINE|Alu 23375 NM_001297708 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 122.25-79 chr5 56721544 56721685 + 1 NA Intergenic Intergenic 51257 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 170.5-43 chr2 198407486 198407693 + 1 NA Intergenic Intergenic -32492 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 184.75-60 chr9 90944578 90945030 + 1 NA Intergenic Intergenic 117384 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 120.5-25 chr12 53127122 53127333 + 1 NA Intergenic L1MEj|LINE|L1 23741 NM_003578 8435 Hs.656544 NM_003578 ENSG00000167780 SOAT2 ACACT2|ACAT2|ARGP2 sterol O-acyltransferase 2 protein-coding 195.5-54 chr22 35235480 35235744 + 1 NA Intergenic L1MEc|LINE|L1 -4556 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 165.75-37 chr20 54840324 54840662 + 1 NA Intergenic Intergenic 364900 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 252.5-14 chr17 67149003 67149361 + 1 NA intron (NM_001330447, intron 19 of 32) intron (NM_001330447, intron 19 of 32) -95594 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 124.5-106 chr8 46981978 46982167 + 1 NA Intergenic Intergenic 141186 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 113.5-48 chr16 76536376 76536508 + 1 NA intron (NR_136213, intron 18 of 23) AluSx1|SINE|Alu -98556 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 132.75-48 chr17 31375026 31375232 + 1 NA 3' UTR (NM_000267, exon 57 of 57) 3' UTR (NM_000267, exon 57 of 57) -16546 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 131.5-82 chr6 151699370 151699604 + 1 NA intron (NM_001122742, intron 1 of 9) intron (NM_001122742, intron 1 of 9) 8991 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 151.5-43 chr2 232753619 232753803 + 1 NA intron (NM_015575, intron 7 of 30) MIR|SINE|MIR 19294 NR_103492 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 125.5-118 chr7 84167197 84167385 + 1 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 27498 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 173.5-20 chr14 39158591 39158802 + 1 NA intron (NM_001079537, intron 2 of 5) AluJb|SINE|Alu 11637 NM_001079537 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B NEDMEBA|TPC6 trafficking protein particle complex 6B protein-coding 137.5-49 chr18 69111604 69111787 + 1 NA Intergenic Intergenic -289193 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 123.5-27 chr12 70118030 70118295 + 1 NA Intergenic Intergenic -124868 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 156.75-76 chr5 54051231 54051411 + 1 NA intron (NM_019087, intron 4 of 4) MIRb|SINE|MIR -99722 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 122.5-50 chr2 121767131 121767322 + 1 NA non-coding (NR_048556, exon 5 of 5) non-coding (NR_048556, exon 5 of 5) 11575 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 116.5-77 chr21 29462903 29463184 + 1 NA Intergenic Intergenic -33004 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 138.75-28 chr16 51537453 51537686 + 1 NA Intergenic MIR3|SINE|MIR -224950 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 167.25-5 chr1 64110551 64110811 + 1 NA non-coding (NR_110666, exon 4 of 6) non-coding (NR_110666, exon 4 of 6) 1524 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 161.75-27 chr2 222058419 222058648 + 1 NA Intergenic Intergenic -239614 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 231.5-42 chr7 31313139 31313488 + 1 NA Intergenic HAL1ME|LINE|L1 27413 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 146.5-5 chr1 183651092 183651422 + 1 NA intron (NM_203454, intron 1 of 1) intron (NM_203454, intron 1 of 1) 2059 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 146.5-43 chr2 5886624 5886806 + 1 NA Intergenic Intergenic -45972 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 160.75-53 chr5 151709292 151709540 + 1 NA Intergenic LTR9D|LTR|ERV1 -22501 NM_001309443 6678 Hs.111779 NM_003118 ENSG00000113140 SPARC BM-40|OI17|ON secreted protein acidic and cysteine rich protein-coding 200.5-30 chr2 15354854 15355150 + 1 NA intron (NR_052013, intron 33 of 50) MER31B|LTR|ERV1 206332 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 120.25-47 chr3 101914347 101914509 + 1 NA Intergenic L1ME3A|LINE|L1 -26431 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 169.5-22 chr14 32150033 32150494 + 1 NA intron (NM_001030055, intron 5 of 6) MER5A|DNA|hAT-Charlie -51782 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 115.75-62 chr3 100403838 100403998 + 1 NA intron (NM_001085451, intron 1 of 3) intron (NM_001085451, intron 1 of 3) 2379 NM_001085451 348801 Hs.591294 NM_001085451 ENSG00000206535 LNP1 NP3 leukemia NUP98 fusion partner 1 protein-coding 222.75-17 chr16 83370677 83370921 + 1 NA intron (NM_001220489, intron 5 of 12) L1PA15|LINE|L1 -137547 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 124.75-47 chr2 151645170 151645476 + 1 NA intron (NM_001271208, intron 55 of 182) intron (NM_001271208, intron 55 of 182) 89153 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 179.75-60 chrX 135549730 135549956 + 1 NA intron (NM_182540, intron 7 of 16) intron (NM_182540, intron 7 of 16) -29169 NR_046740 100874118 Hs.602150 NR_046740 ENSG00000225235 INTS6L-AS1 DDX26B-AS1 INTS6L antisense RNA 1 ncRNA 159.5-71 chr5 110224694 110225062 + 1 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 289037 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 119.25-61 chr21 31272200 31272406 + 1 NA intron (NM_001353688, intron 4 of 29) MER47A|DNA|TcMar-Tigger 72051 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 182.5-3 chr1 67414279 67414490 + 1 NA intron (NM_001018068, intron 7 of 7) intron (NM_001018068, intron 7 of 7) 16018 NM_001018069 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 214.25-35 chr5 39726363 39726763 + 1 NA Intergenic Charlie2a|DNA|hAT-Charlie 206132 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 187.75-18 chr18 6440025 6440338 + 1 NA Intergenic MIR|SINE|MIR -24922 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 114.25-110 chr8 110424900 110425067 + 1 NA Intergenic Intergenic -449212 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 166.5-2 chr1 20704878 20705204 + 1 NA intron (NM_001122819, intron 4 of 14) MIR|SINE|MIR 12966 NM_020816 57576 Hs.130411 NM_020816 ENSG00000117245 KIF17 KIF17B|KIF3X|KLP-2|OSM-3 kinesin family member 17 protein-coding 171.5-84 chr7 7139201 7139502 + 1 NA Intergenic Intergenic -42565 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 205.5-36 chr3 3094725 3095072 + 1 NA intron (NM_175725, intron 9 of 10) AluSx|SINE|Alu 15476 NM_175724 3568 Hs.68876 NM_000564 ENSG00000091181 IL5RA CD125|CDw125|HSIL5R3|IL5R interleukin 5 receptor subunit alpha protein-coding 247.5-8 chr12 121056096 121056385 + 1 NA Intergenic Intergenic -16998 NM_001261825 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 216.5-38 chr7 27023241 27023568 + 1 NA Intergenic Intergenic 72596 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 114.75-54 chr20 19574527 19574687 + 1 NA intron (NM_020689, intron 3 of 16) MLT1H|LTR|ERVL-MaLR -290011 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 144.25-82 chr9 24299911 24300217 + 1 NA Intergenic L2a|LINE|L2 245612 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 263.75-15 chr5 130159820 130160181 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 255535 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 160.5-79 chr8 137124088 137124251 + 1 NA Intergenic MIRb|SINE|MIR 289419 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 133.5-61 chr3 24640566 24640746 + 1 NA Intergenic Intergenic -144948 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 156.5-68 chr6 126189332 126189681 + 1 NA Intergenic Intergenic -150283 NM_001286524 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 115.5-73 chr5 80147158 80147273 + 1 NA intron (NR_126061, intron 10 of 13) intron (NR_126061, intron 10 of 13) -63550 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 272.25-8 chr18 5402803 5403394 + 1 NA intron (NM_001281533, intron 15 of 20) MamTip2|DNA|hAT-Tip100 -106045 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 126.5-85 chr5 13838277 13838490 + 1 NA intron (NM_001369, intron 35 of 78) MER1A|DNA|hAT-Charlie 106097 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 138.5-55 chr2 35690690 35690938 + 1 NA Intergenic L1MC5|LINE|L1 219409 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 188.25-41 chr3 183612963 183613258 + 1 NA Intergenic L2c|LINE|L2 -22513 NM_001349425 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 173.5-58 chr20 49566303 49566640 + 1 NA intron (NM_000961, intron 1 of 9) intron (NM_000961, intron 1 of 9) 1666 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 122.25-26 chr12 40521792 40521971 + 1 NA intron (NM_173600, intron 101 of 173) intron (NM_173600, intron 101 of 173) 128487 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 250.5-4 chr10 10340682 10341007 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 121505 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 119.75-48 chr2 139958104 139958223 + 1 NA Intergenic Intergenic 628522 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 128.5-89 chr6 150706016 150706166 + 1 NA intron (NM_001329800, intron 1 of 15) intron (NM_001329800, intron 1 of 15) -15008 NM_001329806 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 138.75-31 chr17 71052575 71052836 + 1 NA Intergenic Intergenic 149474 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 249.75-14 chr2 148650115 148650765 + 1 NA intron (NM_015630, intron 1 of 13) intron (NM_015630, intron 1 of 13) 5689 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 168.75-45 chr5 18656718 18656945 + 1 NA Intergenic L1MD2|LINE|L1 849557 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 127.75-90 chr7 82376424 82376727 + 1 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 67202 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 130.75-22 chr14 53588724 53588917 + 1 NA Intergenic L1MC4|LINE|L1 359664 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 182.5-8 chr1 177243323 177243562 + 1 NA intron (NM_021165, intron 2 of 7) intron (NM_021165, intron 2 of 7) 72484 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 166.5-86 chr5 106245569 106245892 + 1 NA Intergenic L2b|LINE|L2 765284 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 114.5-57 chr2 168317898 168318085 + 1 NA Intergenic MER39|LTR|ERV1 -70396 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 130.5-19 chr11 27724049 27724192 + 1 NA Intergenic Intergenic -2090 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 155.75-65 chr7 2910868 2911147 + 1 NA intron (NM_001324281, intron 24 of 25) AluJr|SINE|Alu -66699 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 218.75-18 chr16 69227310 69227604 + 1 NA intron (NM_006750, intron 1 of 6) intron (NM_006750, intron 1 of 6) 40310 NM_006750 6645 Hs.461117 NM_006750 ENSG00000168807 SNTB2 D16S2531E|EST25263|SNT2B2|SNT3|SNTL syntrophin beta 2 protein-coding 235.25-4 chr10 74124839 74125171 + 1 NA intron (NM_207012, intron 8 of 9) AluSp|SINE|Alu 25823 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 263.5-9 chr15 64203194 64203614 + 1 NA intron (NM_001329607, intron 9 of 11) intron (NM_001329607, intron 9 of 11) -40249 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 228.75 chr1 176530081 176530504 + 1 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 67117 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 123.5-55 chr2 170390911 170391057 + 1 NA intron (NM_001083615, intron 14 of 33) intron (NM_001083615, intron 14 of 33) -40041 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 229.75-30 chr8 116463835 116464181 + 1 NA Intergenic MIR|SINE|MIR -138949 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 198.25-32 chr4 40544271 40544622 + 1 NA 5' UTR (NM_001371114, exon 2 of 6) 5' UTR (NM_001371114, exon 2 of 6) -28461 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 183.75-61 chrX 152668025 152668433 + 1 NA Intergenic L1MB7|LINE|L1 30334 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 121.5-43 chr16 48630404 48630638 + 1 NA Intergenic Intergenic -20341 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 220.5-33 chr3 144733704 144734057 + 1 NA Intergenic Intergenic 760799 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 206.5-55 chr8 133932502 133932782 + 1 NA Intergenic L1MC3|LINE|L1 46146 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 122.25-46 chr2 23267469 23267642 + 1 NA Intergenic L1ME1|LINE|L1 -117624 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 124.75-82 chr7 48890495 48890646 + 1 NA Intergenic MER61-int|LTR|ERV1 -33977 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 152.5-14 chr10 64190532 64190735 + 1 NA Intergenic Intergenic -634895 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 164.5-16 chr11 105439216 105439519 + 1 NA Intergenic Intergenic -170706 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 484.75 chr9 27516229 27517107 + 1 NA intron (NM_024761, intron 1 of 3) L2|LINE|L2 -7646 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 178.75-43 chr4 52349384 52349780 + 1 NA Intergenic PRIMA41-int|LTR|ERV1 298278 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 150.25-70 chr7 135703810 135704005 + 1 NA intron (NM_001318192, intron 5 of 15) intron (NM_001318192, intron 5 of 15) 24279 NM_012450 26266 Hs.490241 NM_012450 ENSG00000164707 SLC13A4 NAS2|SUT-1|SUT1 solute carrier family 13 member 4 protein-coding 257.5-9 chr14 56024397 56024808 + 1 NA Intergenic AluSz|SINE|Alu -93809 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 154.5-9 chr1 229975686 229975921 + 1 NA Intergenic L2-1_AMi|LINE|L2 -26914 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 173.5-95 chr7 29031189 29031423 + 1 NA intron (NM_001371256, intron 15 of 16) intron (NM_001371256, intron 15 of 16) 51339 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 121.5-103 chr7 36907907 36908139 + 1 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 11409 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 207.5-10 chr11 113840588 113840824 + 1 NA exon (NM_001346261, exon 3 of 23) exon (NM_001346261, exon 3 of 23) 34866 NM_001346253 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 160.25-3 chr10 7655688 7656028 + 1 NA intron (NM_001001851, intron 1 of 11) intron (NM_001001851, intron 1 of 11) 11108 NM_030569 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 237.25-3 chr1 187383940 187384197 + 1 NA Intergenic Intergenic -59560 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 156.25-72 chr8 121139713 121139876 + 1 NA Intergenic L2a|LINE|L2 -327748 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 138.75-33 chr18 67716809 67717061 + 1 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 97887 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 142.5-103 chr9 87174574 87174822 + 1 NA Intergenic Intergenic 26054 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 232.5-48 chr8 104350637 104351026 + 1 NA intron (NM_030788, intron 2 of 3) MER5B|DNA|hAT-Charlie 11005 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 170.5-36 chr17 41848553 41848981 + 1 NA TTS (NM_001329595) TTS (NM_001329595) 10942 NM_152467 317719 Hs.127510 NM_152467 ENSG00000161594 KLHL10 SPGF11 kelch like family member 10 protein-coding 222.75-21 chr18 3839666 3840153 + 1 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 5449 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 163.5-88 chr8 79018022 79018303 + 1 NA Intergenic L1MA2|LINE|L1 180633 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 190.25-22 chr2 146287189 146287621 + 1 NA Intergenic L1M4|LINE|L1 -299652 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 155.25-74 chr9 85906817 85907033 + 1 NA Intergenic Tigger18a|DNA|TcMar-Tigger -34217 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 208.75-4 chr1 240958896 240959252 + 1 NA intron (NM_001350116, intron 4 of 16) A-rich|Low_complexity|Low_complexity -173198 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 159.5-75 chr7 33567566 33567760 + 1 NA intron (NR_145411, intron 22 of 23) L2c|LINE|L2 -337252 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 153.75-85 chr8 52617858 52618205 + 1 NA Intergenic Intergenic -52601 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 208.5-5 chr1 200846579 200846845 + 1 NA intron (NM_001297708, intron 8 of 16) intron (NM_001297708, intron 8 of 16) -26269 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 268.5-11 chr15 25154928 25155222 + 1 NA intron (NR_146177, intron 61 of 147) L1MC3|LINE|L1 -15648 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 191.25-20 chr13 112060903 112061253 + 1 NA intron (NR_120392, intron 1 of 3) CpG -6071 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 127.5-34 chr14 60163547 60163702 + 1 NA intron (NM_001322280, intron 1 of 6) MER106B|DNA|hAT-Charlie 1774 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 155.75-74 chr9 89332294 89332604 + 1 NA intron (NM_001282688, intron 5 of 16) L1MC1|LINE|L1 13598 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 241.75-14 chr2 119223773 119224088 + 1 NA promoter-TSS (NM_182915) promoter-TSS (NM_182915) 96 NM_182915 55240 Hs.647822 NM_018234 ENSG00000115107 STEAP3 AHMIO2|STMP3|TSAP6|dudlin-2|dudulin-2|pHyde STEAP3 metalloreductase protein-coding 182.25-37 chr3 186391567 186391901 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -29500 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 118.5-59 chr2 95576054 95576222 + 1 NA Intergenic Intergenic -15863 NM_138800 129868 Hs.232026 NM_138800 ENSG00000144015 TRIM43 TRIM43A tripartite motif containing 43 protein-coding 128.25-32 chr2 62338039 62338331 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 122664 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 192.75-34 chr4 171678581 171678970 + 1 NA Intergenic Charlie7|DNA|hAT-Charlie -40012 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 205.25-21 chr3 39641616 39642031 + 1 NA Intergenic L3|LINE|CR1 139757 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 174.5-83 chr8 137605774 137606092 + 1 NA Intergenic Intergenic -192345 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 208.25-12 chr2 41903475 41903848 + 1 NA Intergenic HAL1|LINE|L1 26106 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 174.5-4 chr1 241773898 241774198 + 1 NA intron (NM_001367482, intron 20 of 27) intron (NM_001367482, intron 20 of 27) -74143 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 178.75-57 chr7 83580883 83581373 + 1 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 60303 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 200.5-27 chr18 77504925 77505159 + 1 NA Intergenic L1MC|LINE|L1 255194 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 139.5-103 chr7 140134731 140135021 + 1 NA intron (NM_030647, intron 2 of 19) intron (NM_030647, intron 2 of 19) 42107 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 164.5-61 chr3 182897470 182897736 + 1 NA intron (NM_014616, intron 27 of 29) intron (NM_014616, intron 27 of 29) 82935 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 126.75-31 chr16 79110762 79110918 + 1 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 489897 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 149.5-52 chr2 43950282 43950513 + 1 NA intron (NM_133259, intron 15 of 37) intron (NM_133259, intron 15 of 37) 45592 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 132.75-13 chr1 231394748 231395054 + 1 NA intron (NM_022051, intron 1 of 4) intron (NM_022051, intron 1 of 4) 30143 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 248.25-31 chr6 122091833 122092329 + 1 NA Intergenic Intergenic -307470 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 151.5-38 chr2 84624400 84624566 + 1 NA exon (NM_001370, exon 28 of 77) exon (NM_001370, exon 28 of 77) 108028 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 168.5-13 chr11 63251354 63251639 + 1 NA Intergenic HERVL74-int|LTR|ERVL -21844 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 136.25-65 chr5 118009571 118009872 + 1 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -272853 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 174.25-38 chr3 17368473 17368713 + 1 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 331427 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 152.75-4 chr10 53986144 53986407 + 1 NA intron (NM_001354411, intron 22 of 34) L1MB1|LINE|L1 -499955 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 274.25-2 chr11 108527734 108528132 + 1 NA intron (NM_001144765, intron 1 of 2) intron (NM_001144765, intron 1 of 2) 10244 NM_001144765 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 168.5-11 chr10 82711385 82711553 + 1 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -478549 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 116.5-95 chr5 155522540 155522722 + 1 NA Intergenic L1MA3|LINE|L1 508876 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 255.25-22 chr8 118772136 118772613 + 1 NA Intergenic Intergenic -150411 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 135.5-34 chr14 59839599 59839791 + 1 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 31081 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 243.25-11 chr3 120067295 120067644 + 1 NA intron (NM_002093, intron 1 of 11) MER47A|DNA|TcMar-Tigger 17179 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 158.25 chr1 37688505 37688683 + 1 NA intron (NM_001350769, intron 2 of 4) L2c|LINE|L2 1935 NM_001350755 54955 Hs.272673 NM_017850 ENSG00000116922 C1orf109 - chromosome 1 open reading frame 109 protein-coding 258.25 chr1 85373268 85373670 + 1 NA intron (NM_001134445, intron 2 of 6) THE1D|LTR|ERVL-MaLR 31037 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 154.5-21 chr12 9188847 9189100 + 1 NA intron (NM_002864, intron 13 of 35) L1PREC2|LINE|L1 19422 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 170.25-59 chr7 108497079 108497337 + 1 NA intron (NM_001256010, intron 5 of 9) intron (NM_001256010, intron 5 of 9) 28927 NM_001256009 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 164.5-28 chr17 6374105 6374360 + 1 NA Intergenic L1ME1|LINE|L1 60889 NM_001033055 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 278.75-4 chr15 58448228 58448750 + 1 NA intron (NR_120338, intron 2 of 2) L2b|LINE|L2 16498 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 165.75-73 chr8 111417784 111417994 + 1 NA intron (NR_146282, intron 2 of 3) LTR26|LTR|ERV1 41250 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 186.5-63 chrX 16556723 16557184 + 1 NA Intergenic L1ME3E|LINE|L1 70132 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 184.25-7 chr10 48704084 48704453 + 1 NA intron (NM_020945, intron 1 of 61) MIR3|SINE|MIR 18805 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 213.25-4 chr1 199661940 199662267 + 1 NA Intergenic Intergenic -365607 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 178.5-85 chr8 91013028 91013333 + 1 NA intron (NM_018710, intron 4 of 6) L2b|LINE|L2 27679 NM_018710 55529 Hs.202517 NM_018710 ENSG00000155099 PIP4P2 TMEM55A phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 protein-coding 153.75-90 chr9 91424692 91425039 + 1 NA promoter-TSS (NM_001290000) promoter-TSS (NM_001290000) -239 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 139.75-53 chr22 30240388 30240651 + 1 NA TTS (NM_002309) TTS (NM_002309) 1325 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 215.5-28 chr22 26757675 26758018 + 1 NA intron (NR_110543, intron 2 of 5) L1MB7|LINE|L1 85003 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 173.5-82 chr5 40386777 40387105 + 1 NA Intergenic MER33|DNA|hAT-Charlie -292974 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 173.75-13 chr12 6916824 6917165 + 1 NA intron (NM_001975, intron 4 of 11) intron (NM_001975, intron 4 of 11) 2414 NM_001975 2026 Hs.511915 NM_001975 ENSG00000111674 ENO2 HEL-S-279|NSE enolase 2 protein-coding 155.5-92 chr8 67414608 67414961 + 1 NA intron (NR_136224, intron 1 of 4) intron (NR_136224, intron 1 of 4) 70950 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 191.75-31 chr4 89370287 89370588 + 1 NA Intergenic Intergenic -62637 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 170.5-2 chr1 17745528 17745800 + 1 NA Intergenic MIR3|SINE|MIR -9669 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 127.25-31 chr14 71545216 71545380 + 1 NA intron (NM_001354289, intron 5 of 23) L1M5|LINE|L1 -41000 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 223.5-10 chr10 44057843 44058250 + 1 NA Intergenic Intergenic 145644 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 115.5-88 chr7 20345744 20345904 + 1 NA intron (NM_002214, intron 1 of 13) L2a|LINE|L2 -14062 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 112.75-38 chr16 86306974 86307113 + 1 NA Intergenic MER103C|DNA|hAT-Charlie 20612 NR_038438 146513 Hs.434338 NR_038438 ENSG00000268532 LINC02135 - long intergenic non-protein coding RNA 2135 ncRNA 176.25-64 chr7 405337 405642 + 1 NA Intergenic Intergenic 26064 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 166.25-12 chr12 96530456 96530757 + 1 NA intron (NM_001306084, intron 9 of 67) L1MD2|LINE|L1 41029 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 221.5-14 chr15 98252198 98252483 + 1 NA Intergenic L1MEg|LINE|L1 79218 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 165.75-5 chr10 52901861 52902118 + 1 NA Intergenic MER6|DNA|TcMar-Tigger -130289 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 133.5-12 chr10 47148276 47148422 + 1 NA Intergenic L1MDa|LINE|L1 -151848 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 135.5-102 chr8 78722816 78723146 + 1 NA non-coding (NR_077236, exon 1 of 1) non-coding (NR_077236, exon 1 of 1) 1393 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 116.5-103 chr6 124795830 124796046 + 1 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -166607 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 280.25-17 chr5 25369866 25370428 + 1 NA Intergenic L1MA2|LINE|L1 179194 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 200.5-19 chr14 71341200 71341469 + 1 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 20858 NM_015556 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 167.25-37 chr2 99577582 99577839 + 1 NA intron (NM_001025108, intron 17 of 23) (ATTTTC)n|Simple_repeat|Simple_repeat -87693 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 189.25-14 chr16 74803798 74804092 + 1 NA Intergenic L1M4|LINE|L1 -29125 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 129.25-70 chr7 87221946 87222282 + 1 NA Intergenic L2c|LINE|L2 -1527 NM_001329473 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 125.5-19 chr10 81331702 81331899 + 1 NA Intergenic Intergenic -543394 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 124.5-56 chr2 107414702 107414909 + 1 NA Intergenic Intergenic -65280 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 194.75-57 chrX 102341313 102341738 + 1 NA Intergenic Intergenic 94425 NM_001099686 728343 Hs.530358 NM_001099686 ENSG00000269437 NXF2B TCP11X2|bA353J17.1 nuclear RNA export factor 2B protein-coding 167.75-30 chr18 62021702 62021944 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -128816 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 127.25-80 chr5 176718709 176718953 + 1 NA Intergenic Intergenic -24374 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 136.25-60 chr4 48782200 48782445 + 1 NA Intergenic CR1_Mam|LINE|CR1 -2023 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 130.5-20 chr11 39163450 39163785 + 1 NA Intergenic Intergenic 514759 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 113.75-24 chr10 128968667 128968842 + 1 NA Intergenic Intergenic 55921 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 136.75-59 chr3 45103004 45103180 + 1 NA intron (NM_022842, intron 4 of 8) L1ME2|LINE|L1 43286 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 140.5-29 chr14 73964529 73964748 + 1 NA TTS (NM_182476) TTS (NM_182476) 14336 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 145.5 chr1 44809890 44810107 + 1 NA intron (NM_001136537, intron 1 of 7) MIR1_Amn|SINE|MIR 1516 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB domain containing 19 protein-coding 264.75-25 chr9 72187786 72188129 + 1 NA intron (NM_001351571, intron 1 of 13) MSTD-int|LTR|ERVL-MaLR 38517 NM_001351573 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 241.25-10 chr20 59585873 59586180 + 1 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) 8517 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 205.25-15 chr18 24717730 24718124 + 1 NA Intergenic L1ME1|LINE|L1 -7854 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 145.5-73 chr5 3084845 3085118 + 1 NA Intergenic L1MB2|LINE|L1 -92854 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 128.5-81 chr6 34745101 34745243 + 1 NA Intergenic MIRb|SINE|MIR -11922 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 129.5-27 chr14 60884543 60884785 + 1 NA intron (NM_001177963, intron 6 of 6) L1MA2|LINE|L1 96415 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 145.75-68 chr7 100620188 100620383 + 1 NA TTS (NM_001206855) TTS (NM_001206855) 7745 NM_023948 64598 Hs.521086 NM_023948 ENSG00000106330 MOSPD3 CDS3|NET30 motile sperm domain containing 3 protein-coding 145.25-35 chr17 80268678 80268921 + 1 NA intron (NM_020954, intron 2 of 16) MLT2B3|LTR|ERVL 7947 NM_020954 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 247.5 chr1 152823757 152824410 + 1 NA Intergenic Intergenic -3390 NM_178348 353131 Hs.534645 NM_178348 ENSG00000186844 LCE1A LEP1 late cornified envelope 1A protein-coding 201.5-39 chr3 182282045 182282385 + 1 NA Intergenic Intergenic 204147 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 119.5-23 chr11 82915345 82915546 + 1 NA intron (NM_001363481, intron 2 of 4) intron (NM_001363481, intron 2 of 4) -13705 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 128.5-91 chr7 6463153 6463347 + 1 NA intron (NM_001100603, intron 3 of 3) intron (NM_001100603, intron 3 of 3) -15238 NM_001142936 221955 Hs.487498 NM_139179 ENSG00000164535 DAGLB DAGLBETA|KCCR13L diacylglycerol lipase beta protein-coding 114.5-102 chr7 146096554 146096681 + 1 NA Intergenic Intergenic -677654 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 185.25-25 chr2 50465825 50466139 + 1 NA intron (NM_001330093, intron 16 of 22) intron (NM_001330093, intron 16 of 22) -118226 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 254.75-3 chr1 187267849 187268339 + 1 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 175252 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 183.25-26 chr22 32517275 32517485 + 1 NA intron (NM_133633, intron 11 of 11) MLT1H|LTR|ERVL-MaLR 42143 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 128.75-91 chr9 31472824 31473074 + 1 NA Intergenic AluSx3|SINE|Alu -91459 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 160.75-34 chr2 208005318 208005622 + 1 NA intron (NM_001080475, intron 1 of 7) L1MC3|LINE|L1 20057 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 166.5-93 chr7 46123700 46123898 + 1 NA Intergenic L1MA8|LINE|L1 -202527 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 130.5-106 chr9 27183824 27183989 + 1 NA intron (NM_001290077, intron 7 of 21) intron (NM_001290077, intron 7 of 21) 74765 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 145.25-85 chr8 131143426 131143682 + 1 NA Intergenic Intergenic -102645 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 114.25-64 chr2 193656699 193656886 + 1 NA Intergenic Intergenic -687477 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 267.5-35 chr8 129128413 129128871 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 112598 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 154.25-21 chr12 39652155 39652354 + 1 NA intron (NM_001031748, intron 7 of 12) L1ME1|LINE|L1 26071 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 145.5-14 chr10 101675368 101675559 + 1 NA intron (NR_136613, intron 2 of 7) intron (NR_136613, intron 2 of 7) 19707 NM_022039 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 293.5-2 chr1 143254182 143254605 + 1 NA Intergenic Intergenic 168199 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 162.75-7 chr10 11598844 11599030 + 1 NA intron (NM_014688, intron 1 of 14) intron (NM_014688, intron 1 of 14) -12364 NR_160647 107984208 Hs.590986 NR_160647 LOC107984208 - uncharacterized LOC107984208 ncRNA 139.75-13 chr10 114507614 114507898 + 1 NA intron (NM_001352440, intron 6 of 20) intron (NM_001352440, intron 6 of 20) 19157 NM_001322895 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 137.5-31 chr14 59561046 59561306 + 1 NA exon (NM_001164399, exon 7 of 20) exon (NM_001164399, exon 7 of 20) 15636 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 206.75-32 chr8 20066256 20066631 + 1 NA Intergenic Intergenic 116693 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 162.75-55 chr4 111902769 111902972 + 1 NA Intergenic Intergenic -242584 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 178.5-67 chr6 63640035 63640361 + 1 NA intron (NM_001290260, intron 1 of 3) intron (NM_001290260, intron 1 of 3) 3717 NM_001290260 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 146.5-75 chr5 101523308 101523501 + 1 NA Intergenic Intergenic -620122 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 197.5-12 chr12 42356825 42357160 + 1 NA intron (NM_001364830, intron 3 of 6) intron (NM_001364830, intron 3 of 6) 25194 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 327.5-10 chr7 135221653 135222215 + 1 NA Intergenic L1MB7|LINE|L1 -10045 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 155.75-62 chr6 154919545 154919842 + 1 NA Intergenic AluJo|SINE|Alu 66333 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 178.75-32 chr2 196174535 196174898 + 1 NA Intergenic Intergenic -3138 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 174.25-16 chr11 17418723 17418988 + 1 NA intron (NR_147094, intron 16 of 37) intron (NR_147094, intron 16 of 37) -29509 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 191.5-23 chr14 84029298 84029596 + 1 NA Intergenic Intergenic -1242485 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 241.5-37 chr8 8413153 8413458 + 1 NA Intergenic Intergenic -26866 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 132.75-76 chr5 37695622 37695777 + 1 NA intron (NM_001345998, intron 10 of 17) MLT1E3|LTR|ERVL-MaLR 139123 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 170.75-37 chr2 52708251 52708537 + 1 NA Intergenic Intergenic -5779 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 146.5-42 chr18 78446435 78446654 + 1 NA Intergenic Intergenic -452817 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 148.5-28 chr14 65414425 65414624 + 1 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 1794 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 120.5-94 chr6 130076562 130076757 + 1 NA intron (NM_001007102, intron 12 of 21) intron (NM_001007102, intron 12 of 21) 57015 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 212.5-43 chr4 124784833 124785176 + 1 NA Intergenic L2b|LINE|L2 -72272 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 237.5-8 chr12 43310035 43310436 + 1 NA Intergenic MamGypsy2-I|LTR|Gypsy 154920 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 165.75-47 chr4 51898794 51899072 + 1 NA intron (NM_001040402, intron 7 of 10) intron (NM_001040402, intron 7 of 10) 55354 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 182.5-76 chr9 2226425 2226779 + 1 NA Intergenic Intergenic 68146 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 290.5-17 chr2 228785551 228785962 + 1 NA Intergenic Intergenic -174361 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 151.5-49 chr3 25223949 25224227 + 1 NA intron (NM_001290216, intron 4 of 10) MIR3|SINE|MIR -116714 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 182.5-20 chr15 59063537 59063768 + 1 NA intron (NM_001270529, intron 5 of 13) intron (NM_001270529, intron 5 of 13) -41494 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 217.5-44 chr8 31932912 31933173 + 1 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -92694 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 165.5-36 chr16 81471609 81471789 + 1 NA intron (NM_198390, intron 1 of 20) MER44B|DNA|TcMar-Tigger -23655 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 164.5-48 chr20 54821662 54821878 + 1 NA Intergenic Intergenic 346177 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 263.75-5 chr2 65488434 65488800 + 1 NA Intergenic MIR|SINE|MIR -56018 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 215.5-43 chr6 73769404 73769679 + 1 NA intron (NM_001159588, intron 13 of 31) intron (NM_001159588, intron 13 of 31) 73338 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 114.75-53 chr2 204055475 204055634 + 1 NA Intergenic Intergenic 118806 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 185.5-17 chr11 47852403 47852677 + 1 NA Intergenic L2|LINE|L2 -3996 NM_001318399 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 210.75-23 chr4 49144198 49144702 + 1 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 157808 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 124.5-43 chr18 4479878 4480041 + 1 NA Intergenic Intergenic -24652 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 122.75-4 chr1 96050677 96050934 + 1 NA Intergenic Intergenic 58737 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 125.5-70 chr2 216790144 216790370 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR 69807 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 113.5-104 chr6 48362542 48362749 + 1 NA Intergenic Intergenic -293956 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 171.25-47 chr6 20454522 20454787 + 1 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 50975 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 160.5-38 chr2 201255501 201255683 + 1 NA intron (NM_033355, intron 2 of 9) MIRb|SINE|MIR -2443 NR_111983 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 216.5-24 chr3 132382112 132382486 + 1 NA Intergenic LTR9C|LTR|ERV1 -35203 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 134.5-53 chr22 19582680 19582980 + 1 NA Intergenic AluSq2|SINE|Alu -15991 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 138.5-23 chr12 90559461 90559666 + 1 NA Intergenic LTR40a|LTR|ERVL 266245 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 121.5-61 chr2 76607766 76607995 + 1 NA Intergenic Intergenic -378085 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 121.75-19 chr14 37520333 37520605 + 1 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 74780 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 195.25-37 chr5 92477751 92478070 + 1 NA Intergenic Intergenic 1093433 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 185.25-39 chr4 113361251 113361469 + 1 NA intron (NM_001354275, intron 38 of 43) intron (NM_001354275, intron 38 of 43) 68521 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 255.25-5 chr11 46504129 46504420 + 1 NA intron (NR_160027, intron 8 of 18) intron (NR_160027, intron 8 of 18) -52385 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 151.5-5 chr1 113645984 113646229 + 1 NA intron (NM_001142782, intron 11 of 20) intron (NM_001142782, intron 11 of 20) 113049 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 302.5 chr1 179016223 179016711 + 1 NA Intergenic L2a|LINE|L2 -9337 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 119.5-57 chr2 71818086 71818236 + 1 NA Intergenic L2a|LINE|L2 329701 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 164.5-42 chr2 190549137 190549464 + 1 NA Intergenic HAL1M8|LINE|L1 -14578 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 164.75-28 chr18 5214606 5214864 + 1 NA Intergenic MIR3|SINE|MIR -16983 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 196.5-30 chr15 60896668 60897001 + 1 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 215265 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 151.5-31 chr15 41919463 41919687 + 1 NA exon (NM_139265, exon 4 of 6) exon (NM_139265, exon 4 of 6) -1842 NR_120332 101928363 Hs.680195 NR_120332 EHD4-AS1 - EHD4 antisense RNA 1 ncRNA 203.75-10 chr14 56380954 56381195 + 1 NA Intergenic Intergenic -133257 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 261.75-14 chr2 69776467 69776728 + 1 NA intron (NM_001365496, intron 2 of 13) MER21C|LTR|ERVL 34463 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 147.75-16 chr12 56178022 56178405 + 1 NA intron (NM_001330288, intron 14 of 28) intron (NM_001330288, intron 14 of 28) 11270 NM_001330288 6601 Hs.236030 NM_003075 ENSG00000139613 SMARCC2 BAF170|CRACC2|CSS8|Rsc8 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 protein-coding 127.75-77 chr5 67061461 67061704 + 1 NA intron (NM_001297651, intron 2 of 25) intron (NM_001297651, intron 2 of 25) 56927 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 135.5-60 chr20 38709316 38709492 + 1 NA Intergenic L1ME4b|LINE|L1 -15082 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 232.25-17 chr2 151830933 151831412 + 1 NA Intergenic MIR|SINE|MIR -2751 NM_001037174 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 114.5-56 chr2 166252373 166252507 + 1 NA intron (NR_110260, intron 7 of 11) intron (NR_110260, intron 7 of 11) -103279 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 202.5-4 chr11 57688571 57688869 + 1 NA intron (NM_015457, intron 4 of 11) intron (NM_015457, intron 4 of 11) 20606 NM_015457 25921 Hs.27239 NM_015457 ENSG00000156599 ZDHHC5 DHHC5|ZNF375 zinc finger DHHC-type containing 5 protein-coding 141.5-91 chr5 28391421 28391671 + 1 NA Intergenic MER65A|LTR|ERV1 -103881 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 182.75-8 chr13 92258517 92258869 + 1 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 93514 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 180.5-22 chr12 55017197 55017429 + 1 NA Intergenic Intergenic -2661 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 113.75-106 chr8 65402070 65402231 + 1 NA Intergenic Intergenic 160516 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 292.5-15 chr6 163265202 163265676 + 1 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 59034 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 159.5-74 chr6 145501390 145501693 + 1 NA Intergenic Intergenic 185336 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 354.25-2 chr10 61531851 61532556 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 52162 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 180.75-32 chr17 19546938 19547275 + 1 NA intron (NM_018242, intron 3 of 16) AluJo|SINE|Alu -10454 NR_003022 677882 Hs.658450 NR_003022 ENSG00000266079 SNORA59B ACA59 small nucleolar RNA, H/ACA box 59B snoRNA 134.5-34 chr18 2592011 2592235 + 1 NA intron (NM_006101, intron 10 of 16) intron (NM_006101, intron 10 of 16) 20566 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 168.25-68 chr9 12383865 12384084 + 1 NA Intergenic Intergenic -309411 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 173.25-49 chr4 58141718 58142007 + 1 NA Intergenic L2a|LINE|L2 394466 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 124.25-86 chr9 26970601 26970805 + 1 NA intron (NM_001099224, intron 2 of 13) intron (NM_001099224, intron 2 of 13) 14291 NM_025103 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 156.25-31 chr2 29174331 29174539 + 1 NA exon (NM_001287527, exon 15 of 16) exon (NM_001287527, exon 15 of 16) 49465 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 192.25-28 chr4 36296360 36296676 + 1 NA intron (NM_001170700, intron 5 of 9) intron (NM_001170700, intron 5 of 9) 14902 NR_160267 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 165.5-71 chr5 101294555 101294934 + 1 NA Intergenic Intergenic -391462 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 166.5-48 chr18 57278975 57279236 + 1 NA Intergenic Intergenic -73452 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 227.5-11 chr11 16046063 16046380 + 1 NA intron (NM_033326, intron 12 of 15) intron (NM_033326, intron 12 of 15) -76600 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 184.5-23 chr14 20754225 20754507 + 1 NA Intergenic Intergenic 8479 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 271.25-5 chr17 40442124 40442577 + 1 NA Intergenic AluJo|SINE|Alu -1100 NM_001552 3487 Hs.462998 NM_001552 ENSG00000141753 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin like growth factor binding protein 4 protein-coding 148.5-51 chr2 194110617 194110850 + 1 NA Intergenic L1MC3|LINE|L1 -233536 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 206.25-18 chr2 16956483 16956916 + 1 NA Intergenic MIR|SINE|MIR -290865 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 130.5-38 chr15 72552592 72552772 + 1 NA intron (NM_005744, intron 3 of 13) L1ME4b|LINE|L1 -34535 NR_030359 693215 NR_030359 ENSG00000283798 MIR630 MIRN630|hsa-mir-630 microRNA 630 ncRNA 306.25-9 chr21 27290830 27291150 + 1 NA Intergenic Intergenic -323902 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 156.25-68 chr7 50839677 50840043 + 1 NA Intergenic Intergenic -46407 NM_001371008 144.5-65 chr21 19667643 19667890 + 1 NA Intergenic Intergenic 231989 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 209.75-14 chr16 50192416 50192671 + 1 NA intron (NM_001365324, intron 1 of 11) intron (NM_001365324, intron 1 of 11) 39062 NM_001365324 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 137.75-16 chr11 107949542 107949747 + 1 NA intron (NM_017516, intron 1 of 1) intron (NM_017516, intron 1 of 1) 21196 NM_017516 54734 Hs.354906 NM_017516 ENSG00000179331 RAB39A RAB39 RAB39A, member RAS oncogene family protein-coding 300.75-5 chr18 8131723 8132334 + 1 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 235006 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 167.5-33 chr18 264497 264702 + 1 NA intron (NM_005131, intron 3 of 20) MIR|SINE|MIR 3448 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 160.5-72 chr7 81124271 81124577 + 1 NA Intergenic L1PB4|LINE|L1 -202035 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 162.25-28 chr3 188807738 188808099 + 1 NA intron (NM_001167672, intron 7 of 9) L1MCc|LINE|L1 119137 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 244.5-18 chr2 237042396 237042752 + 1 NA Intergenic Intergenic 13593 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 158.5-38 chr15 64359110 64359301 + 1 NA Intergenic Intergenic -3032 NM_001329607 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 154.75-13 chr12 63079486 63079736 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 73199 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 130.25-41 chr18 26995951 26996097 + 1 NA intron (NM_031422, intron 4 of 5) intron (NM_031422, intron 4 of 5) -130221 NM_001317387 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 152.75-56 chr5 173023155 173023379 + 1 NA intron (NM_003945, intron 3 of 3) AluSx|SINE|Alu 2541 NR_002988 677841 Hs.692720 NR_002988 ENSG00000212402 SNORA74B U19-2 small nucleolar RNA, H/ACA box 74B snoRNA 145.75-53 chr3 29049580 29049853 + 1 NA Intergenic Intergenic 231223 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 121.75-80 chr7 11571584 11571723 + 1 NA intron (NM_015204, intron 4 of 26) L1MEf|LINE|L1 260545 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 181.5-4 chr10 28466989 28467225 + 1 NA intron (NR_134496, intron 1 of 2) THE1B|LTR|ERVL-MaLR 28706 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 150.5-33 chr15 65794408 65794623 + 1 NA Intergenic Intergenic -2222 NM_001320835 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 180.25-31 chr2 166173159 166173416 + 1 NA intron (NR_110260, intron 3 of 11) intron (NR_110260, intron 3 of 11) -24126 NM_001353950 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 181.25-40 chr22 47989558 47989824 + 1 NA Intergenic L1MEg|LINE|L1 -284673 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 225.5-5 chr1 158464137 158464505 + 1 NA Intergenic Intergenic -1241 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 128.75-87 chr8 61694325 61694494 + 1 NA intron (NM_001164755, intron 1 of 12) L2b|LINE|L2 -4598 NM_020164 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 212.5-20 chr16 63212159 63212440 + 1 NA Intergenic L1MB8|LINE|L1 -1175861 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 232.75-13 chr20 46687638 46688004 + 1 NA intron (NM_033550, intron 1 of 1) intron (NM_033550, intron 1 of 1) 1623 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 218.25-2 chr1 24713571 24713812 + 1 NA Intergenic Intergenic -31756 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 214.5-2 chr1 96000002 96000373 + 1 NA intron (NR_125991, intron 3 of 4) L1MC|LINE|L1 8119 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 132.75-34 chr14 30301326 30301485 + 1 NA Intergenic L1MEj|LINE|L1 -257718 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 153.25-50 chr7 93459625 93459800 + 1 NA intron (NM_001164738, intron 7 of 12) MER5B|DNA|hAT-Charlie 23143 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 187.5-35 chr2 68159701 68159928 + 1 NA intron (NM_020143, intron 2 of 6) intron (NM_020143, intron 2 of 6) 1926 NM_020143 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 122.5-26 chr13 86972321 86972484 + 1 NA Intergenic Intergenic 60482 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 191.75-36 chr5 169782872 169783179 + 1 NA intron (NR_156756, intron 25 of 52) intron (NR_156756, intron 25 of 52) 145750 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 241.75-22 chr4 13144604 13144955 + 1 NA Intergenic AluSq2|SINE|Alu 339561 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 156.25-45 chr22 25809018 25809375 + 1 NA intron (NM_001318245, intron 12 of 43) AluSg7|SINE|Alu 67008 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 192.5-35 chr21 21966943 21967304 + 1 NA Intergenic Intergenic 131336 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 113.75-45 chr17 59401674 59401879 + 1 NA TTS (NM_001005404) TTS (NM_001005404) 35693 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 147.75-4 chr1 154382752 154382983 + 1 NA Intergenic L1ME3|LINE|L1 -22326 NM_001206866 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 166.5-77 chr4 182269413 182269676 + 1 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 26142 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 198.25-3 chr1 229084907 229085304 + 1 NA Intergenic L1MC2|LINE|L1 89696 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 136.75-8 chr10 28267224 28267483 + 1 NA intron (NM_173496, intron 2 of 18) L2a|LINE|L2 14770 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 212.75-15 chr2 75599356 75599808 + 1 NA Intergenic AluSx|SINE|Alu -29863 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 179.5-12 chr10 5164301 5164681 + 1 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 20696 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 146.25-11 chr11 22004857 22005025 + 1 NA Intergenic MamRep1879|DNA|hAT-Tip100? -188144 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 180.75-34 chr2 61986910 61987191 + 1 NA intron (NM_152516, intron 1 of 2) L1MA2|LINE|L1 81408 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 196.75-40 chr6 151453309 151453744 + 1 NA intron (NM_001286562, intron 1 of 3) intron (NM_001286562, intron 1 of 3) 1060 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 137.75-69 chr5 65943972 65944173 + 1 NA TTS (NR_028474) TTS (NR_028474) 1501 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 123.5-92 chr5 165563384 165563566 + 1 NA Intergenic Intergenic 1093196 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 124.5-101 chr7 36852960 36853116 + 1 NA non-coding (NR_038120, exon 6 of 6) non-coding (NR_038120, exon 6 of 6) 66394 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 141.75-7 chr10 53047735 53047876 + 1 NA Intergenic Intergenic -276105 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 128.75-5 chr10 9257341 9257531 + 1 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -18177 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 162.5-93 chr8 87835074 87835324 + 1 NA Intergenic LTR37A|LTR|ERV1 38816 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 124.5-103 chr7 114163213 114163491 + 1 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 77025 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 121.5-20 chr10 121010109 121010307 + 1 NA Intergenic Intergenic 158846 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 126.25-77 chr6 54449909 54450123 + 1 NA Intergenic L1M4c|LINE|L1 141575 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 123.5-39 chr15 98928170 98928298 + 1 NA intron (NM_001291858, intron 13 of 20) intron (NM_001291858, intron 13 of 20) 77422 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 295.25-9 chr2 104892847 104893668 + 1 NA Intergenic Intergenic -20662 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 196.75-30 chr5 15028745 15029120 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR -157154 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 224.75-14 chr20 34396097 34396472 + 1 NA intron (NM_001257138, intron 3 of 23) AluSx|SINE|Alu 33011 NM_001257138 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 182.5-68 chr8 59010790 59011089 + 1 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 108208 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 186.25-48 chr7 41012612 41012942 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -32838 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 122.5-59 chr3 79852560 79852719 + 1 NA Intergenic L2b|LINE|L2 -84641 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 130.5-53 chr20 9143598 9143844 + 1 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -73669 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 191.25-44 chr3 190541896 190542186 + 1 NA intron (NM_001364879, intron 1 of 10) intron (NM_001364879, intron 1 of 10) 27956 NM_134470 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 177.25-29 chr22 24098519 24098900 + 1 NA intron (NM_012295, intron 26 of 36) intron (NM_012295, intron 26 of 36) -82778 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 195.5-42 chr2 28972823 28973055 + 1 NA Intergenic L3|LINE|CR1 -8359 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 171.5-25 chr14 55769410 55769868 + 1 NA Intergenic Intergenic 3394 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 123.25-5 chr1 165751744 165751883 + 1 NA intron (NM_001256164, intron 5 of 6) L1MC4|LINE|L1 17055 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 257.75-21 chr6 17526021 17526311 + 1 NA intron (NM_006366, intron 7 of 12) AluSx|SINE|Alu -14901 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 146.75-36 chr4 73196174 73196323 + 1 NA intron (NM_032217, intron 1 of 33) AluSx1|SINE|Alu 26809 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 150.25-4 chr1 115800704 115800878 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -31986 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 211.25-20 chr2 141778580 141778927 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 352948 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 247.75-28 chr9 22429657 22430062 + 1 NA Intergenic Intergenic -16965 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 175.25-36 chr21 31362653 31362944 + 1 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -18444 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 115.5-64 chr4 39071801 39071985 + 1 NA intron (NM_199039, intron 1 of 9) intron (NM_199039, intron 1 of 9) 9661 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 168.5-77 chrX 122051229 122051558 + 1 NA Intergenic L1MEg|LINE|L1 680421 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 128.75-16 chr11 86387807 86388177 + 1 NA intron (NM_001156474, intron 3 of 14) intron (NM_001156474, intron 3 of 14) 13105 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 177.5 chr1 70852390 70852601 + 1 NA non-coding (NR_028292, exon 6 of 6) non-coding (NR_028292, exon 6 of 6) 146042 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 214.75-12 chr15 37867524 37867807 + 1 NA Intergenic Intergenic -66942 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 189.75 chr1 80026074 80026425 + 1 NA Intergenic Tigger3a|DNA|TcMar-Tigger -509506 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 288.75 chr1 207396318 207396817 + 1 NA Intergenic MER66B|LTR|ERV1 -57733 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 120.5-91 chr6 62861662 62861858 + 1 NA Intergenic SATR1|Satellite|Satellite 458217 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 132.75-73 chr4 59550182 59550409 + 1 NA Intergenic Intergenic 536722 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 128.5-16 chr12 15871914 15872141 + 1 NA Intergenic L1ME3E|LINE|L1 -10360 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 129.5-33 chr15 45369452 45369658 + 1 NA intron (NM_001482, intron 2 of 8) intron (NM_001482, intron 2 of 8) 8989 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 156.5-95 chr9 72272368 72272549 + 1 NA Intergenic Intergenic -32978 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 199.75-31 chr4 40045771 40046122 + 1 NA intron (NR_027277, intron 1 of 2) intron (NR_027277, intron 1 of 2) -10904 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 116.75-11 chr10 114960243 114960380 + 1 NA intron (NM_139169, intron 4 of 7) intron (NM_139169, intron 4 of 7) 22116 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 144.25-64 chr5 129174095 129174344 + 1 NA Intergenic Intergenic 76531 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 128.75-37 chr19 10486004 10486180 + 1 NA TTS (NM_203500) TTS (NM_203500) 16679 NM_012289 9817 Hs.465870 NM_012289 ENSG00000079999 KEAP1 INrf2|KLHL19 kelch like ECH associated protein 1 protein-coding 146.75-8 chr10 81748098 81748360 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -126965 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 134.5-10 chr10 79318076 79318303 + 1 NA Intergenic Intergenic -29280 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 182.25-49 chr6 73592460 73592882 + 1 NA TTS (NM_012434) TTS (NM_012434) 61321 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 174.25-66 chrX 50834010 50834460 + 1 NA Intergenic L2b|LINE|L2 -20191 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 161.75-58 chr7 115862226 115862626 + 1 NA Intergenic Intergenic 105887 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 181.5-15 chr13 94692650 94692974 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 15674 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 166.75-10 chr10 57778565 57778836 + 1 NA Intergenic Intergenic -474141 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 186.5-10 chr10 93155977 93156217 + 1 NA Intergenic L2|LINE|L2 82204 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 118.5-109 chr7 128290176 128290461 + 1 NA Intergenic L1ME4a|LINE|L1 49040 NM_000230 3952 Hs.194236 NM_000230 ENSG00000174697 LEP LEPD|OB|OBS leptin protein-coding 143.5-26 chr12 101636262 101636470 + 1 NA intron (NM_001254721, intron 7 of 28) intron (NM_001254721, intron 7 of 28) 41395 NM_002465 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 213.5-17 chr14 48034002 48034281 + 1 NA Intergenic L1PA8A|LINE|L1 -239127 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 121.25-26 chr16 6588772 6589121 + 1 NA intron (NM_018723, intron 2 of 15) L1MC4|LINE|L1 -184863 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 151.5-29 chr14 61680552 61680844 + 1 NA TTS (NR_047116) TTS (NR_047116) -14815 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 190.75-9 chr10 57352170 57352383 + 1 NA Intergenic Intergenic -47717 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 163.75-13 chr11 37343572 37343758 + 1 NA Intergenic Intergenic -594936 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 219.5-52 chr9 100520076 100520354 + 1 NA intron (NM_001198812, intron 5 of 9) AluJb|SINE|Alu 47066 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 144.5-51 chr2 10039365 10039609 + 1 NA Intergenic L1ME4b|LINE|L1 3914 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 216.5-12 chr14 51558386 51558622 + 1 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 41448 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 153.5-78 chr5 76869472 76869656 + 1 NA intron (NM_130772, intron 1 of 4) L2c|LINE|L2 19550 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 117.25-39 chr2 5747653 5747827 + 1 NA Intergenic L2a|LINE|L2 55356 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 208.75-8 chr10 118225521 118225809 + 1 NA Intergenic L1MD1|LINE|L1 116659 NM_001134672 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 129.75-43 chr2 149098694 149098924 + 1 NA intron (NM_001317004, intron 1 of 6) intron (NM_001317004, intron 1 of 6) -19365 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 140.25-47 chr22 21756760 21756925 + 1 NA Intergenic Intergenic -21048 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 141.75-32 chr16 78161017 78161208 + 1 NA intron (NM_001291997, intron 3 of 7) L1MEg|LINE|L1 61458 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 118.25-107 chr8 34960522 34960708 + 1 NA Intergenic L2|LINE|L2 176694 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 140.5-66 chr3 128599228 128599519 + 1 NA Intergenic Intergenic -23287 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 161.75-41 chr4 105642984 105643284 + 1 NA intron (NM_001242729, intron 5 of 13) MamSINE1|SINE|tRNA-RTE 65555 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 236.25-16 chr2 88579367 88579933 + 1 NA intron (NM_004836, intron 10 of 16) intron (NM_004836, intron 10 of 16) 40930 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 169.25-16 chr12 40573608 40573952 + 1 NA Intergenic Intergenic -118659 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 183.25-15 chr14 56758499 56758725 + 1 NA Intergenic Intergenic 47055 NM_172337 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 159.5-63 chr4 45335775 45335977 + 1 NA Intergenic Tigger19a|DNA|TcMar-Tigger -609242 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 228.25-35 chr7 92852575 92852902 + 1 NA intron (NR_110088, intron 1 of 1) intron (NR_110088, intron 1 of 1) -16111 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 193.5-81 chr9 137539676 137539926 + 1 NA intron (NM_001098537, intron 8 of 34) AluSq|SINE|Alu 10601 NM_001098537 375775 Hs.294147 NM_152286 ENSG00000130653 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin like phospholipase domain containing 7 protein-coding 289.5-3 chr10 51801088 51801456 + 1 NA intron (NM_001098512, intron 3 of 17) MER58B|DNA|hAT-Charlie -101677 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 131.25-13 chr10 8649012 8649206 + 1 NA Intergenic Intergenic -54718 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 229.5-17 chr14 46208490 46208836 + 1 NA intron (NR_102702, intron 1 of 3) L1MC4|LINE|L1 144504 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 132.75-66 chr3 178173272 178173484 + 1 NA Intergenic Intergenic -245823 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 161.5-74 chr5 124032269 124032611 + 1 NA Intergenic Intergenic 406080 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 164.5-13 chr11 39546036 39546200 + 1 NA Intergenic L2c|LINE|L2 747012 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 167.25-49 chr3 81136180 81136464 + 1 NA Intergenic Intergenic 142454 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 127.25-53 chr2 222353401 222353556 + 1 NA intron (NR_136642, intron 3 of 3) Charlie24|DNA|hAT-Charlie 32817 NR_136639 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 143.75-85 chr8 124148870 124149128 + 1 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 22523 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 146.5-92 chr8 120482618 120482775 + 1 NA intron (NM_022045, intron 11 of 21) AluSc8|SINE|Alu 37277 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 141.5-83 chr4 37705394 37705601 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -19121 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 242.5-40 chr9 74906654 74906963 + 1 NA Intergenic L1ME5|LINE|L1 -18887 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 112.75-55 chr21 17334698 17334980 + 1 NA Intergenic Intergenic -104051 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 122.5-80 chr6 35272263 35272415 + 1 NA intron (NM_001292032, intron 1 of 12) AluJr|SINE|Alu 12604 NM_003427 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 134.25-22 chr14 80116696 80116864 + 1 NA Intergenic (TTTTA)n|Simple_repeat|Simple_repeat -94639 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 155.75-12 chr11 23228437 23228626 + 1 NA Intergenic Intergenic 190659 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 206.5-9 chr11 34681721 34682044 + 1 NA Intergenic Intergenic 49316 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 227.25-42 chr9 128947133 128947377 + 1 NA promoter-TSS (NM_015354) promoter-TSS (NM_015354) -444 NM_015354 23511 Hs.308340 NM_015354 ENSG00000095319 NUP188 KIAA0169|hNup188 nucleoporin 188 protein-coding 118.25-27 chr14 43906935 43907110 + 1 NA Intergenic MamGyp-int|LTR|Gypsy 600261 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 282.25-14 chr5 41684742 41685118 + 1 NA Intergenic Intergenic 158727 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 137.5-26 chr12 106396169 106396358 + 1 NA intron (NM_001160708, intron 10 of 27) intron (NM_001160708, intron 10 of 27) 38181 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 176.5-5 chr10 17948954 17949271 + 1 NA Intergenic Intergenic -2727 NM_001282733 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 167.75-64 chr7 68653777 68653986 + 1 NA Intergenic L1MB8|LINE|L1 633628 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 173.75-7 chr10 31699836 31700199 + 1 NA Intergenic Intergenic 208909 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 199.5-10 chr11 80017721 80018007 + 1 NA Intergenic Intergenic -576834 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 132.25-5 chr1 241840563 241840719 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -7550 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 147.25-37 chr20 41935274 41935434 + 1 NA Intergenic Intergenic -316977 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 163.25-55 chr5 40235573 40235835 + 1 NA Intergenic Intergenic 183413 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 177.5-70 chrX 91310207 91310559 + 1 NA Intergenic Intergenic -124456 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 179.5-92 chr8 96851840 96852100 + 1 NA intron (NM_016134, intron 3 of 7) intron (NM_016134, intron 3 of 7) 206728 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 182.75-53 chr7 51853999 51854290 + 1 NA Intergenic LTR16E2|LTR|ERVL -460888 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 134.5-69 chr4 48106168 48106428 + 1 NA intron (NM_003328, intron 5 of 14) intron (NM_003328, intron 5 of 14) 27952 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 176.25-37 chr20 38735948 38736217 + 1 NA Intergenic L1MEd|LINE|L1 11596 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 122.25-103 chrX 35259560 35259847 + 1 NA Intergenic Intergenic 316907 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 156.5-73 chr7 46842754 46842947 + 1 NA Intergenic Intergenic -145728 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 131.5-4 chr1 161201072 161201270 + 1 NA promoter-TSS (NM_001166159) promoter-TSS (NM_001166159) -976 NM_001166159 4720 Hs.173611 NM_004550 ENSG00000158864 NDUFS2 CI-49|MC1DN6 NADH:ubiquinone oxidoreductase core subunit S2 protein-coding 133.25-56 chr3 115028422 115028660 + 1 NA intron (NM_015642, intron 1 of 9) MER33|DNA|hAT-Charlie 42873 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 215.75-5 chr14 40612832 40613271 + 1 NA Intergenic LTR87|LTR|ERVL? -341660 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 186.25-26 chr2 64485155 64485410 + 1 NA Intergenic Intergenic -1071 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 133.5-16 chr10 125366330 125366486 + 1 NA Intergenic L1M4|LINE|L1 -205378 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 124.5-95 chr6 168026994 168027140 + 1 NA intron (NM_005355, intron 1 of 7) intron (NM_005355, intron 1 of 7) 9194 NM_005355 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 121.5-110 chr9 6010642 6010793 + 1 NA TTS (NM_001243202) TTS (NM_001243202) -2235 NM_001017969 158358 Hs.535060 NM_001017969 ENSG00000183354 KIAA2026 - KIAA2026 protein-coding 164.5-71 chr5 67932165 67932437 + 1 NA Intergenic Intergenic 139088 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 240.25-8 chr17 6497782 6498059 + 1 NA intron (NM_031220, intron 4 of 19) intron (NM_031220, intron 4 of 19) 53465 NM_001195228 54478 Hs.592116 NM_019013 ENSG00000129195 PIMREG CATS|FAM64A|RCS1 PICALM interacting mitotic regulator protein-coding 269.5-6 chr10 121425350 121425842 + 1 NA Intergenic Intergenic 105718 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 233.5-23 chr17 67430270 67430601 + 1 NA intron (NM_181671, intron 1 of 9) AluSz|SINE|Alu -41054 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 243.5-20 chr5 59381285 59381588 + 1 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -24466 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 319.5-5 chr18 79455340 79455886 + 1 NA intron (NM_001278672, intron 6 of 8) intron (NM_001278672, intron 6 of 8) 55314 NM_172387 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 163.25-2 chr1 91858109 91858308 + 1 NA intron (NR_036634, intron 2 of 17) MIR|SINE|MIR 27943 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 145.25-22 chr12 42323281 42323447 + 1 NA TTS (NR_107005) TTS (NR_107005) 495 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 127.25-35 chr15 79577046 79577293 + 1 NA Intergenic MSTC|LTR|ERVL-MaLR 144653 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 151.5-74 chr6 82676503 82676679 + 1 NA Intergenic L1MC3|LINE|L1 312347 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 113.25-80 chr21 28859944 28860129 + 1 NA Intergenic HERVL-int|LTR|ERVL 25331 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 149.5-80 chr5 6764503 6764673 + 1 NA Intergenic L1MA4|LINE|L1 -31292 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 295.5-10 chr18 48272549 48272875 + 1 NA intron (NM_001371290, intron 5 of 9) L1MB7|LINE|L1 20411 NM_001350280 84322 Hs.334493 NM_032362 C18orf12 HEIL1|HsT2508 chromosome 18 open reading frame 12 protein-coding 239.75-11 chr14 67322637 67323023 + 1 NA intron (NM_001256550, intron 13 of 14) intron (NM_001256550, intron 13 of 14) 36974 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 173.5-105 chr8 134986793 134987015 + 1 NA Intergenic Intergenic 136969 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 186.5-37 chr2 206749643 206749983 + 1 NA intron (NR_104261, intron 4 of 9) Tigger4b|DNA|TcMar-Tigger 15515 NR_138468 130752 Hs.147816 NM_206892 ENSG00000138400 MDH1B RP11-95H11 malate dehydrogenase 1B protein-coding 115.25-50 chr2 116846019 116846320 + 1 NA Intergenic L1ME3|LINE|L1 -968522 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 223.5-21 chr12 115133741 115134054 + 1 NA Intergenic L1MA5A|LINE|L1 -449722 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 216.5-41 chr8 5522030 5522299 + 1 NA Intergenic Intergenic -527250 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 187.5-17 chr12 114911351 114911658 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -227329 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 160.5-62 chr5 172373284 172373494 + 1 NA intron (NM_001017995, intron 6 of 12) intron (NM_001017995, intron 6 of 12) 81134 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 144.5-23 chr11 79464112 79464328 + 1 NA Intergenic Intergenic -23190 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 277.25-5 chr10 26539920 26540294 + 1 NA intron (NM_019043, intron 10 of 14) L1ME3G|LINE|L1 39200 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 200.75-2 chr1 41935295 41935551 + 1 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -16501 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 176.5-4 chr10 4194406 4194751 + 1 NA Intergenic Intergenic 49334 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 126.75-15 chr11 78774105 78774254 + 1 NA intron (NM_001098816, intron 17 of 33) MIRb|SINE|MIR -199315 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 149.5-83 chr5 94802970 94803218 + 1 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 184425 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 194.5-14 chr11 81460471 81460691 + 1 NA Intergenic Intergenic 430255 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 138.5-22 chr12 49986276 49986505 + 1 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 13443 NM_001652 363 Hs.54505 NM_001652 ENSG00000086159 AQP6 AQP2L|KID aquaporin 6 protein-coding 141.5-109 chr8 27498623 27498852 + 1 NA intron (NM_001256483, intron 1 of 17) L1MB8|LINE|L1 7594 NM_001256483 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 189.75-43 chr6 17419094 17419466 + 1 NA intron (NM_006366, intron 1 of 12) intron (NM_006366, intron 1 of 12) 25685 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 400.5-2 chr5 40883987 40884606 + 1 NA Intergenic MIRb|SINE|MIR -25201 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 229.25-18 chr3 70575891 70576398 + 1 NA Intergenic Intergenic -263506 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 159.5-53 chr22 32760411 32760841 + 1 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -40190 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 199.5-20 chr16 59402907 59403284 + 1 NA Intergenic Intergenic 352096 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 167.75-11 chr11 75702539 75702718 + 1 NA Intergenic Intergenic -15210 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 147.75-82 chr8 84665975 84666329 + 1 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -39775 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 260.5-31 chr8 27149769 27150079 + 1 NA Intergenic Intergenic -100961 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 155.5-9 chr1 118200624 118200857 + 1 NA Intergenic Intergenic -15512 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 164.5-56 chr3 102103055 102103322 + 1 NA Intergenic Intergenic -60517 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 195.5-85 chr7 144441308 144441551 + 1 NA Intergenic L2a|LINE|L2 -31202 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 187.75-3 chr10 44953660 44953988 + 1 NA intron (NR_033842, intron 1 of 7) (TAGA)n|Simple_repeat|Simple_repeat 5865 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 153.75-28 chr14 71585771 71586036 + 1 NA promoter-TSS (NM_001284246) promoter-TSS (NM_001284246) -395 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 167.75-27 chr17 26815404 26815723 + 1 NA Intergenic Intergenic 273678 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 154.5-63 chr5 74565966 74566153 + 1 NA Intergenic Intergenic -29083 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 159.5-64 chr4 47942855 47943095 + 1 NA intron (NM_000087, intron 8 of 10) intron (NM_000087, intron 8 of 10) -28308 NM_001278623 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 158.75-12 chr12 8495191 8495534 + 1 NA Intergenic L1PA8|LINE|L1 -18141 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 208.5-66 chr7 34086005 34086290 + 1 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 180608 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 225.25-28 chr5 143337737 143338091 + 1 NA intron (NR_157096, intron 1 of 7) L1ME3B|LINE|L1 65369 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 277.25-16 chr20 51279690 51280156 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 173054 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 183.75 chr1 27211073 27211414 + 1 NA Intergenic Intergenic -23389 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 130.5-28 chr12 94323796 94323962 + 1 NA intron (NM_001042399, intron 13 of 15) L1ME3|LINE|L1 61358 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 251.5-20 chr3 99085335 99085703 + 1 NA Intergenic LTR41C|LTR|ERVL -183824 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 151.5-50 chr3 38569107 38569400 + 1 NA intron (NM_198056, intron 20 of 27) L1ME4a|LINE|L1 72913 NR_134938 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 202.25-15 chr18 62888969 62889248 + 1 NA intron (NM_194449, intron 4 of 16) intron (NM_194449, intron 4 of 16) 173567 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 184.5-15 chr11 91468383 91468608 + 1 NA Intergenic Intergenic -599293 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 192.5-13 chr11 106195382 106195574 + 1 NA Intergenic AluSx|SINE|Alu -54541 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 217.75-17 chr18 73512942 73513159 + 1 NA Intergenic Intergenic 188109 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 153.5-99 chrX 108841184 108841360 + 1 NA Intergenic L1MA7|LINE|L1 104732 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 186.25-18 chr14 66022039 66022479 + 1 NA Intergenic Intergenic -464112 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 178.5-64 chr6 40619080 40619400 + 1 NA Intergenic L2b|LINE|L2 -31876 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 190.5-13 chr10 110402380 110402774 + 1 NA Intergenic L2c|LINE|L2 -95330 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 183.25-7 chr10 127591924 127592219 + 1 NA Intergenic L1ME3G|LINE|L1 42722 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 151.5-48 chr3 22556646 22556803 + 1 NA Intergenic Intergenic 599585 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 167.5-77 chr7 28985163 28985393 + 1 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 5311 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 175.75-43 chr6 63505101 63505432 + 1 NA Intergenic Intergenic -66746 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 119.75-55 chr22 47686253 47686431 + 1 NA intron (NR_122046, intron 3 of 8) intron (NR_122046, intron 3 of 8) 54668 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 161.25-69 chr6 19363479 19363822 + 1 NA Intergenic Intergenic -86171 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 168.5-67 chr7 418095 418281 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 38763 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 206.25-14 chr15 76427979 76428262 + 1 NA intron (NR_148227, intron 27 of 32) L1MA6|LINE|L1 91347 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 192.75-14 chr16 73957765 73958016 + 1 NA Intergenic Intergenic 257631 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 125.25-2 chr1 200084118 200084335 + 1 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 41401 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 231.75-5 chr11 50218933 50219274 + 1 NA Intergenic AluSx1|SINE|Alu 79359 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 131.75-29 chr14 69995697 69995907 + 1 NA intron (NM_001034852, intron 7 of 11) intron (NM_001034852, intron 7 of 11) 17669 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 158.5-12 chr10 5220279 5220495 + 1 NA Intergenic L2|LINE|L2 23550 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 146.25-35 chr2 53365516 53365839 + 1 NA Intergenic Intergenic -402106 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 163.25-19 chr12 75569615 75569840 + 1 NA Intergenic AluSx3|SINE|Alu -58118 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 133.25-23 chr14 32687773 32688107 + 1 NA intron (NM_004274, intron 8 of 13) intron (NM_004274, intron 8 of 13) -250939 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 163.75-52 chr4 98380973 98381153 + 1 NA intron (NM_021159, intron 5 of 14) intron (NM_021159, intron 5 of 14) 119679 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 207.5-13 chr12 63094998 63095245 + 1 NA Intergenic LTR102_Mam|LTR|ERVL 57689 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 135.5-103 chr8 88520464 88520636 + 1 NA Intergenic Intergenic -193067 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 177.5-2 chr1 103138488 103138738 + 1 NA Intergenic Intergenic -30091 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 146.5-87 chr8 41940089 41940348 + 1 NA intron (NM_006766, intron 15 of 16) intron (NM_006766, intron 15 of 16) -43477 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 237.75-22 chr2 53998428 53998802 + 1 NA intron (NM_001320587, intron 2 of 5) AluJo|SINE|Alu 27502 NM_001320586 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 128.75-25 chr14 68575357 68575496 + 1 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 53361 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 213.5-35 chr3 104024805 104025096 + 1 NA Intergenic Intergenic -500834 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 130.75-62 chr5 128929722 128929965 + 1 NA Intergenic Intergenic -35284 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 127.5-77 chr3 28897305 28897571 + 1 NA Intergenic L1MB7|LINE|L1 322160 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 210.5-15 chr14 23851005 23851268 + 1 NA Intergenic MER65-int|LTR|ERV1 -102634 NM_021004 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 123.5-98 chr7 86366464 86366652 + 1 NA Intergenic Intergenic -277351 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 124.25-11 chr1 235039373 235039521 + 1 NA Intergenic L1MCa|LINE|L1 30371 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 178.25-12 chr10 57528535 57529051 + 1 NA Intergenic L1ME1|LINE|L1 -224234 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 117.5-12 chr11 47579486 47579626 + 1 NA promoter-TSS (NM_001318716) promoter-TSS (NM_001318716) 482 NM_004551 4722 Hs.502528 NM_004551 ENSG00000213619 NDUFS3 CI-30|MC1DN8 NADH:ubiquinone oxidoreductase core subunit S3 protein-coding 279.5-13 chr8 143999796 144000154 + 1 NA Intergenic L1MEg1|LINE|L1 9917 NM_000837 2907 Hs.594634 NM_000837 ENSG00000178719 GRINA HNRGW|LFG1|NMDARA1|TMBIM3 glutamate ionotropic receptor NMDA type subunit associated protein 1 protein-coding 128.25-48 chr3 56005451 56005591 + 1 NA intron (NR_132749, intron 10 of 17) intron (NR_132749, intron 10 of 17) -152927 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 117.5-86 chr6 117205301 117205479 + 1 NA Intergenic L1MA9|LINE|L1 -60168 NM_182645 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 176.5-88 chrX 154763769 154764092 + 1 NA intron (NR_110022, intron 1 of 13) AluSx|SINE|Alu 1066 NM_001363 1736 Hs.4747 NM_001363 ENSG00000130826 DKC1 CBF5|DKC|DKCX|NAP57|NOLA4|XAP101 dyskerin pseudouridine synthase 1 protein-coding 223.5-66 chr6 10029111 10029501 + 1 NA Intergenic Intergenic -375196 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 115.5-68 chr4 99572412 99572620 + 1 NA intron (NM_001300785, intron 1 of 17) intron (NM_001300785, intron 1 of 17) 8438 NM_001300785 4547 Hs.195799 NM_000253 ENSG00000138823 MTTP ABL|MTP microsomal triglyceride transfer protein protein-coding 137.5-53 chr2 52294184 52294547 + 1 NA intron (NR_135237, intron 7 of 10) LTR8B|LTR|ERV1 -76283 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 159.25-14 chr12 85536712 85536970 + 1 NA Intergenic Intergenic 256621 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 148.25-66 chr7 127262665 127262900 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -9841 NM_001371087 145.25-43 chr2 137478824 137479134 + 1 NA intron (NM_001316349, intron 15 of 27) L1MA4A|LINE|L1 448953 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 143.5-75 chr4 64525126 64525324 + 1 NA Intergenic L1MA5|LINE|L1 -115765 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 114.5-68 chr3 168293385 168293599 + 1 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 43970 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 130.5-29 chr12 106562803 106562997 + 1 NA intron (NR_040246, intron 1 of 3) intron (NR_040246, intron 1 of 3) -20007 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 135.75-104 chr8 115362177 115362412 + 1 NA Intergenic Intergenic 305719 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 136.5-83 chr4 77864654 77864923 + 1 NA intron (NM_020236, intron 1 of 8) intron (NM_020236, intron 1 of 8) 1958 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 128.25-57 chr5 6688289 6688470 + 1 NA intron (NR_103771, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 19332 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 219.5-36 chr4 62845006 62845296 + 1 NA Intergenic L1PA13|LINE|L1 -683386 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 231.25-15 chr17 74085882 74086159 + 1 NA Intergenic Intergenic -117658 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 209.5-54 chr9 72842700 72843094 + 1 NA Intergenic Intergenic 31212 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 137.75-57 chr3 114111922 114112231 + 1 NA Intergenic AluSz|SINE|Alu 55339 NM_001256837 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 166.75-42 chr3 120865378 120865759 + 1 NA Intergenic Intergenic -29211 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 223.5-63 chr5 42464858 42465199 + 1 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 40047 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 122.75-41 chr2 41986761 41987098 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -33123 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 126.25-83 chr7 26502564 26502894 + 1 NA TTS (NR_148504) TTS (NR_148504) 36096 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 130.25-62 chr3 24617783 24617986 + 1 NA Intergenic Zaphod2|DNA|hAT-Tip100 -122176 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 137.75-41 chr18 72784779 72785051 + 1 NA intron (NR_148694, intron 6 of 11) intron (NR_148694, intron 6 of 11) 68467 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 168.75-39 chr3 177998625 177998939 + 1 NA Intergenic L1MEf|LINE|L1 181917 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 127.75-105 chr9 85057802 85058068 + 1 NA Intergenic Intergenic 352034 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 144.25-35 chr2 3326093 3326316 + 1 NA intron (NM_001330530, intron 3 of 9) intron (NM_001330530, intron 3 of 9) 51614 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 152.75-6 chr10 106094015 106094191 + 1 NA Intergenic L1ME3E|LINE|L1 -46062 NR_134331 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 167.5-42 chr2 205112280 205112607 + 1 NA intron (NM_205863, intron 5 of 21) intron (NM_205863, intron 5 of 21) 566968 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 251.25-23 chr4 116493988 116494368 + 1 NA Intergenic Intergenic 194453 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 187.25-26 chr19 8105343 8105629 + 1 NA intron (NM_032447, intron 38 of 63) AluJb|SINE|Alu 43383 NM_001321431 84467 Hs.370362 NM_032447 ENSG00000142449 FBN3 - fibrillin 3 protein-coding 145.5-42 chr19 57279718 57280134 + 1 NA promoter-TSS (NM_001330622) promoter-TSS (NM_001330622) -41 NM_001330622 10794 Hs.99971 NM_006635 ENSG00000197714 ZNF460 HZF8|ZNF272 zinc finger protein 460 protein-coding 149.25-27 chr16 82271700 82271926 + 1 NA Intergenic Intergenic -101589 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 131.5-40 chr2 60079772 60079940 + 1 NA Intergenic L2c|LINE|L2 303180 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 124.5-36 chr15 97286975 97287176 + 1 NA Intergenic L1MC3|LINE|L1 234736 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 150.5-56 chr3 35802961 35803195 + 1 NA Intergenic Intergenic 58602 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 136.75-87 chr6 110666727 110667117 + 1 NA intron (NM_001300963, intron 5 of 13) intron (NM_001300963, intron 5 of 13) -147699 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 151.75-61 chr4 63985544 63985852 + 1 NA Intergenic Intergenic 423752 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 196.25-4 chr10 53136174 53136411 + 1 NA Intergenic Intergenic -364592 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 256.5-15 chr15 91739729 91740178 + 1 NA Intergenic Intergenic -113755 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 184.5-53 chr3 143865757 143866143 + 1 NA Intergenic Intergenic -17482 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 176.5-81 chr8 47611018 47611223 + 1 NA intron (NM_001080394, intron 10 of 19) intron (NM_001080394, intron 10 of 19) -42968 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 126.5-49 chr2 48229090 48229260 + 1 NA Intergenic AluJo|SINE|Alu -85507 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 133.5-11 chr10 28032621 28032827 + 1 NA Intergenic Intergenic -33645 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 218.5-20 chr2 19053843 19054155 + 1 NA Intergenic L1PB|LINE|L1 -27028 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 148.75-5 chr10 88671983 88672253 + 1 NA intron (NM_001198829, intron 7 of 10) intron (NM_001198829, intron 7 of 10) 7676 NM_001198829 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 190.5-50 chr4 39092091 39092484 + 1 NA intron (NM_199039, intron 4 of 9) intron (NM_199039, intron 4 of 9) 30055 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 176.75-10 chr13 19883266 19883530 + 1 NA Intergenic L1MB5|LINE|L1 -19749 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 268.25-15 chr6 387745 388142 + 1 NA Intergenic Intergenic -3809 NM_002460 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 223.5-69 chr6 94820659 94821125 + 1 NA Intergenic Intergenic 756559 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 171.25-54 chr7 76180367 76180646 + 1 NA Intergenic AluSx|SINE|Alu -21390 NM_001110199 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 260.25-24 chr7 158737724 158738056 + 1 NA intron (NM_020728, intron 18 of 21) intron (NM_020728, intron 18 of 21) -33086 NM_017760 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 218.25-8 chr10 121461173 121461548 + 1 NA Intergenic Intergenic 69954 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 132.5-18 chr12 3735047 3735300 + 1 NA intron (NM_001144958, intron 1 of 19) L1MA9|LINE|L1 17936 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 146.25-49 chr22 26631261 26631433 + 1 NA TTS (NM_001886) TTS (NM_001886) 9384 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 153.5-32 chr15 70411395 70411594 + 1 NA Intergenic Intergenic 94434 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 197.5-62 chr9 34379326 34379626 + 1 NA intron (NM_032596, intron 6 of 6) intron (NM_032596, intron 6 of 6) 2113 NM_147169 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 187.5-29 chr17 79574923 79575271 + 1 NA intron (NM_001350451, intron 1 of 14) MER5B|DNA|hAT-Charlie 35954 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 155.5-94 chr8 110329736 110329919 + 1 NA Intergenic Intergenic -354056 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 117.5-35 chr17 51979172 51979341 + 1 NA intron (NM_001082533, intron 3 of 9) L1ME2|LINE|L1 179458 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 126.5-5 chr1 65334704 65334883 + 1 NA intron (NM_001256864, intron 1 of 18) intron (NM_001256864, intron 1 of 18) 25250 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 148.75-29 chr19 14716829 14717189 + 1 NA exon (NM_032433, exon 10 of 12) exon (NM_032433, exon 10 of 12) 26961 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 172.5-78 chr7 18344486 18344768 + 1 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 54535 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 172.75-35 chr6 64150294 64150580 + 1 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 343601 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 192.5-28 chr2 77439755 77440002 + 1 NA intron (NR_146416, intron 1 of 1) MIR|SINE|MIR 82498 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 162.5-17 chr11 61970646 61970859 + 1 NA Intergenic AluSq|SINE|Alu -3118 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 153.25-24 chr2 34287537 34287756 + 1 NA intron (NR_126403, intron 5 of 5) intron (NR_126403, intron 5 of 5) 220420 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 211.25-32 chr5 106023537 106023806 + 1 NA Intergenic Intergenic 924197 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 210.5-17 chr14 42947208 42947451 + 1 NA Intergenic L1P4a|LINE|L1 1340473 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 168.75-52 chr6 154579058 154579300 + 1 NA Intergenic Intergenic -68494 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 336.5-7 chr4 125419563 125420237 + 1 NA intron (NM_001291303, intron 6 of 16) intron (NM_001291303, intron 6 of 16) -87359 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 145.5-76 chr5 68152531 68152787 + 1 NA Intergenic Intergenic -37217 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 258.75-27 chr8 47675202 47675503 + 1 NA intron (NR_148204, intron 11 of 19) intron (NR_148204, intron 11 of 19) 15688 NM_001352960 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 212.25-32 chr4 94128148 94128478 + 1 NA intron (NR_125922, intron 6 of 8) intron (NR_125922, intron 6 of 8) 79243 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 200.5-37 chr20 35086808 35087060 + 1 NA intron (NM_199368, intron 1 of 18) AluSg|SINE|Alu 5873 NM_015638 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 116.25-31 chr16 80876507 80876648 + 1 NA intron (NR_131948, intron 1 of 2) MIR|SINE|MIR 16019 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 141.5-113 chr8 114546254 114546409 + 1 NA Intergenic Intergenic -1109392 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 152.25-72 chr9 17901686 17902012 + 1 NA Intergenic Intergenic 322783 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 166.75-36 chr2 134726771 134727027 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -7899 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 229.5-29 chr2 115072095 115072497 + 1 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 7723 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 134.5-21 chr12 51028793 51029056 + 1 NA promoter-TSS (NM_001174125) promoter-TSS (NM_001174125) -682 NM_001174125 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 272.5-25 chr8 137487514 137487811 + 1 NA Intergenic L2c|LINE|L2 -74074 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 224.5-6 chr1 214626651 214626979 + 1 NA intron (NM_016343, intron 7 of 19) intron (NM_016343, intron 7 of 19) 23620 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 173.5-92 chr6 151831046 151831319 + 1 NA intron (NM_001328100, intron 1 of 6) AluJr|SINE|Alu 22075 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 298.75-11 chr8 80308935 80309403 + 1 NA Intergenic AluSp|SINE|Alu 67780 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 143.75-23 chr11 59732270 59732431 + 1 NA Intergenic MER41B|LTR|ERV1 -16462 NR_045005 81343 Hs.741974 NR_045005 ENSG00000255538 OR10V2P - olfactory receptor family 10 subfamily V member 2 pseudogene pseudo 131.75-57 chr4 48473730 48473938 + 1 NA Intergenic L2|LINE|L2 -9509 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 333.25-6 chr8 104115930 104116533 + 1 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -107104 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 123.5-84 chr5 42644594 42644753 + 1 NA intron (NM_001242403, intron 3 of 9) L1MC5a|LINE|L1 78809 NM_001242460 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 232.75-7 chr17 58260310 58260640 + 1 NA intron (NR_027647, intron 8 of 11) L1MA1|LINE|L1 20460 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 227.5-9 chr1 224362654 224363028 + 1 NA intron (NM_001277198, intron 2 of 4) HAL1|LINE|L1 5962 NR_102347 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|CNIH2|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 168.5-56 chr4 62340975 62341209 + 1 NA Intergenic L1PB4|LINE|L1 -179327 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 228.25-27 chr3 98758189 98758512 + 1 NA intron (NM_001323366, intron 2 of 11) intron (NM_001323366, intron 2 of 11) -4957 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 191.5-66 chr8 54840194 54840654 + 1 NA Intergenic AluSx|SINE|Alu 224328 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 117.25-9 chr1 198907340 198907560 + 1 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 29979 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 238.5-40 chr8 136166369 136166890 + 1 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -364169 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 194.5-55 chr4 126841008 126841368 + 1 NA Intergenic L1MC4|LINE|L1 -791769 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 149.25-69 chr9 74396541 74396844 + 1 NA Intergenic Intergenic 25161 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 207.25-9 chr16 49161589 49161969 + 1 NA Intergenic Intergenic 120059 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 145.5-54 chr2 192098757 192098940 + 1 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 96085 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 185.75-54 chr7 82882994 82883280 + 1 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 279747 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 134.5-14 chr11 73981965 73982222 + 1 NA intron (NM_003355, intron 1 of 7) intron (NM_003355, intron 1 of 7) 751 NM_003355 7351 Hs.80658 NM_003355 ENSG00000175567 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 protein-coding 128.75-10 chr10 81536168 81536484 + 1 NA Intergenic MLT1E3|LTR|ERVL-MaLR -338868 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 192.5-15 chr12 46060580 46060813 + 1 NA Intergenic L1MB5|LINE|L1 -70122 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 220.5-44 chr7 158176387 158176810 + 1 NA intron (NM_130843, intron 5 of 21) intron (NM_130843, intron 5 of 21) 322013 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 179.5-18 chr10 107800047 107800404 + 1 NA Intergenic Intergenic 269068 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 227.25-8 chr11 67423422 67423717 + 1 NA exon (NM_001166222, exon 10 of 10) exon (NM_001166222, exon 10 of 10) -4925 NM_003952 6199 Hs.534345 NM_003952 ENSG00000175634 RPS6KB2 KLS|P70-beta|P70-beta-1|P70-beta-2|S6K-beta2|S6K2|S6KB|S6KI(2)|S6Kbeta|SRK|STK14B|p70(S6K)-beta|p70S6Kb ribosomal protein S6 kinase B2 protein-coding 212.5-21 chr16 81517473 81517888 + 1 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -16222 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 126.25-91 chr8 119122512 119122663 + 1 NA Intergenic Intergenic -53805 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 146.75-6 chr10 33907203 33907449 + 1 NA Intergenic AluSp|SINE|Alu -134646 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 190.25-2 chr1 30934040 30934258 + 1 NA intron (NM_001020658, intron 21 of 21) intron (NM_001020658, intron 21 of 21) 1627 NR_033295 692235 NR_033295 SNORD103B U103B small nucleolar RNA, C/D box 103B snoRNA 123.25-70 chr5 170431711 170431849 + 1 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) 42287 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 256.5-24 chr2 224847531 224847921 + 1 NA intron (NM_001290263, intron 19 of 55) intron (NM_001290263, intron 19 of 55) 99323 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 183.5-12 chr10 86061030 86061359 + 1 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 203594 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 132.5-100 chr6 98386218 98386472 + 1 NA Intergenic Intergenic 361814 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 217.25-30 chr7 37516060 37516470 + 1 NA Intergenic Intergenic -66939 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 223.5-11 chr10 71168358 71168704 + 1 NA Intergenic Cheshire|DNA|hAT-Charlie -44039 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 250.25-15 chr4 31222711 31222991 + 1 NA Intergenic L1M5|LINE|L1 51707 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 163.5-90 chr8 86786024 86786278 + 1 NA Intergenic Intergenic -42476 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 123.5-17 chr10 106248921 106249069 + 1 NA Intergenic MIR3|SINE|MIR 108830 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 183.25-35 chr4 36952661 36952984 + 1 NA Intergenic L1PA10|LINE|L1 -48957 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 148.5-4 chr1 174628359 174628564 + 1 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -72078 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 130.25-22 chr13 57240714 57240870 + 1 NA Intergenic L1MEc|LINE|L1 73595 NM_001130404 729233 Hs.723090 NM_001130404 ENSG00000204918 PRR20B PRR20|PRR20A|PRR20C|PRR20D|PRR20E proline rich 20B protein-coding 114.5-9 chr11 10515567 10515895 + 1 NA intron (NM_016422, intron 5 of 5) intron (NM_016422, intron 5 of 5) -6545 NM_001190702 100463486 NM_001190702 ENSG00000255823 MTRNR2L8 HN8 MT-RNR2 like 8 protein-coding 193.5-56 chr4 126250804 126251063 + 1 NA Intergenic L1MD2|LINE|L1 743674 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 123.25-26 chr15 46319545 46319674 + 1 NA Intergenic Intergenic 614414 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 301.5-18 chr7 50377651 50378145 + 1 NA intron (NM_001220771, intron 3 of 3) intron (NM_001220771, intron 3 of 3) 58850 NM_001220768 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 124.25-68 chr5 54122529 54122875 + 1 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) -171103 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 237.5-30 chr4 12147228 12147612 + 1 NA Intergenic Intergenic -76031 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 205.25-10 chr12 127532636 127532866 + 1 NA Intergenic L1MA9|LINE|L1 103716 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 127.5-9 chr1 193759866 193760029 + 1 NA Intergenic L1ME2|LINE|L1 455202 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 209.75-42 chr7 78954486 78954941 + 1 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -54275 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 123.75-62 chr20 50188048 50188302 + 1 NA intron (NR_125739, intron 5 of 6) AluJr4|SINE|Alu -2408 NM_001285879 1051 Hs.517106 NM_005194 ENSG00000172216 CEBPB C/EBP-beta|IL6DBP|NF-IL6|TCF5 CCAAT enhancer binding protein beta protein-coding 165.5-17 chr12 14927264 14927518 + 1 NA intron (NM_152321, intron 3 of 6) L1ME3B|LINE|L1 1734 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 191.25-37 chr20 48043507 48043794 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -53533 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 268.75-7 chr10 115973770 115974190 + 1 NA Intergenic L1ME1|LINE|L1 220809 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 122.75-85 chr9 98994525 98994749 + 1 NA intron (NM_001855, intron 5 of 41) L2b|LINE|L2 50730 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 235.5-11 chr10 61030997 61031388 + 1 NA Intergenic Intergenic 14917 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 152.5-48 chr18 38374091 38374324 + 1 NA Intergenic Intergenic 717072 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 160.5-43 chr20 58418204 58418447 + 1 NA exon (NM_004738, exon 2 of 6) exon (NM_004738, exon 2 of 6) 29096 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 231.5-27 chr22 50379650 50379934 + 1 NA intron (NM_001242899, intron 2 of 22) AluJb|SINE|Alu -27650 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 119.75-4 chr1 187896028 187896296 + 1 NA Intergenic L1MEc|LINE|L1 452534 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 187.5-78 chr7 110038352 110038693 + 1 NA Intergenic L1MA3|LINE|L1 -78309 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 160.75-19 chr14 46575191 46575467 + 1 NA Intergenic L2|LINE|L2 76452 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 242.25-30 chr8 89420098 89420520 + 1 NA Intergenic Intergenic 337402 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 183.25-41 chr5 40609587 40610023 + 1 NA Intergenic Intergenic -70110 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 128.25-30 chr19 28957348 28957628 + 1 NA Intergenic LTR23|LTR|ERV1 -7643 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 113.75-87 chr5 31330181 31330400 + 1 NA Intergenic Intergenic 136604 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 133.75-31 chr15 85857600 85857781 + 1 NA Intergenic Intergenic 32055 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 122.75-52 chr22 29202338 29202666 + 1 NA Intergenic Intergenic -3394 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 315.25-12 chr7 46307429 46308010 + 1 NA Intergenic L1PB1|LINE|L1 -386447 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 126.5-91 chr5 60488833 60488989 + 1 NA promoter-TSS (NM_001349241) promoter-TSS (NM_001349241) -846 NM_001349243 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 152.5-97 chr7 97803655 97803953 + 1 NA Intergenic L1ME3Cz|LINE|L1 68361 NM_001178077 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 117.5-50 chr2 75478091 75478402 + 1 NA Intergenic L2a|LINE|L2 -45822 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 131.5-23 chr12 115485284 115485548 + 1 NA Intergenic MIR|SINE|MIR 663238 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 163.5-50 chr22 31296066 31296406 + 1 NA Intergenic Intergenic -3702 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 194.5-17 chr12 75557087 75557302 + 1 NA Intergenic Intergenic -45585 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 190.25-34 chr3 181726659 181726852 + 1 NA intron (NR_075091, intron 7 of 7) CpG 14830 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 155.25-48 chr3 189473284 189473491 + 1 NA Intergenic Intergenic -123359 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 185.5-28 chr14 74665503 74665740 + 1 NA intron (NM_001039479, intron 17 of 19) intron (NM_001039479, intron 17 of 19) 47459 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 183.25-45 chr6 115241336 115241684 + 1 NA Intergenic Intergenic 402325 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 172.25-72 chr7 104530075 104530478 + 1 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 201620 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 146.5-19 chr11 116601073 116601331 + 1 NA Intergenic Intergenic -38220 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 235.5-37 chr3 169146812 169147164 + 1 NA promoter-TSS (NM_005241) promoter-TSS (NM_005241) -449 NM_001366468 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 198.25 chr1 87524277 87524556 + 1 NA Intergenic Intergenic -152761 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 153.75-44 chr20 5986446 5986665 + 1 NA intron (NM_182802, intron 16 of 18) intron (NM_182802, intron 16 of 18) 19266 NR_110101 101929225 Hs.635771 NR_110101 ENSG00000278719 MCM8-AS1 - MCM8 antisense RNA 1 ncRNA 189.5-14 chr13 113893107 113893433 + 1 NA Intergenic L1MC2|LINE|L1 -1833 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 147.5-51 chr2 198588462 198588867 + 1 NA Intergenic Intergenic -213567 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 137.5-12 chr10 77955704 77955946 + 1 NA Intergenic AluSz6|SINE|Alu 29013 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 153.25-22 chr17 71845729 71845943 + 1 NA Intergenic Intergenic 180143 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 159.75-8 chr10 102665675 102665966 + 1 NA Intergenic AluSq2|SINE|Alu 21325 NM_001345950 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 145.5-56 chr20 44311647 44311879 + 1 NA promoter-TSS (NM_001080472) promoter-TSS (NM_001080472) -561 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 143.5-74 chr4 63888237 63888406 + 1 NA Intergenic Intergenic 521129 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 230.5-36 chr3 185656307 185656709 + 1 NA intron (NR_138486, intron 11 of 15) intron (NR_138486, intron 11 of 15) -56744 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 165.25-2 chr1 70428943 70429112 + 1 NA intron (NM_001902, intron 5 of 11) AluJo|SINE|Alu 17759 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 131.75-71 chr6 158675341 158675479 + 1 NA intron (NM_001242394, intron 5 of 17) intron (NM_001242394, intron 5 of 17) 12007 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 167.25-41 chr21 32174531 32174755 + 1 NA Intergenic L1MEg|LINE|L1 -88348 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 261.75-12 chr19 52098991 52099512 + 1 NA Intergenic Intergenic -3486 NM_001321349 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 142.25-28 chr17 32529584 32529780 + 1 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 42689 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 200.75-45 chr8 134860574 134860948 + 1 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 10826 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 126.25-47 chr2 156416941 156417131 + 1 NA Intergenic L2c|LINE|L2 -18516 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 264.75-5 chr12 77829322 77829707 + 1 NA Intergenic Intergenic -1380 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 144.75-52 chr22 45183519 45183689 + 1 NA intron (NM_153645, intron 8 of 8) intron (NM_153645, intron 8 of 8) 8008 NR_146602 105373064 NR_146602 LOC105373064 - uncharacterized LOC105373064 ncRNA 153.75-87 chr8 105429487 105429740 + 1 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 110070 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 203.5-48 chr8 107627885 107628275 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -130162 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 207.5-50 chr5 142586284 142586606 + 1 NA Intergenic Intergenic 34889 NM_001257212 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 222.75-5 chr10 58641849 58642156 + 1 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -73013 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 141.5-74 chr3 44452294 44452619 + 1 NA intron (NM_001369454, intron 2 of 6) intron (NM_001369454, intron 2 of 6) 24534 NR_144436 100506319 Hs.180744 NR_144436 ENSG00000283036 LINC01988 - long intergenic non-protein coding RNA 1988 ncRNA 124.5-47 chr19 37093601 37093757 + 1 NA intron (NM_001329515, intron 4 of 5) MSTB|LTR|ERVL-MaLR 15246 NM_144689 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 177.75-71 chrX 86751461 86751928 + 1 NA intron (NM_001139515, intron 7 of 11) (AAGG)n|Simple_repeat|Simple_repeat 488726 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 171.25-40 chr4 66370044 66370350 + 1 NA Intergenic Intergenic 93373 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 148.25-27 chr16 87064309 87064561 + 1 NA TTS (NR_126008) TTS (NR_126008) 6651 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 147.5-19 chr12 41607741 41607963 + 1 NA Intergenic Intergenic -156337 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 140.5-38 chr2 15009757 15010026 + 1 NA Intergenic LTR40A1|LTR|ERVL 377174 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 231.25-33 chr6 69487480 69487752 + 1 NA Intergenic Intergenic 308850 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 213.5-15 chr14 31940116 31940473 + 1 NA Intergenic MIR3|SINE|MIR -4559 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 145.5-19 chr12 2564484 2564662 + 1 NA intron (NM_199460, intron 11 of 49).2 intron (NM_199460, intron 11 of 49).2 107647 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 278.5-12 chr14 82445486 82445927 + 1 NA Intergenic Intergenic -196926 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 131.5-33 chr17 71377888 71378162 + 1 NA Intergenic Intergenic -175846 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 151.75-80 chr8 113808715 113808935 + 1 NA Intergenic Intergenic -371886 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 216.5-33 chr5 87351648 87351996 + 1 NA intron (NM_022650, intron 8 of 24) intron (NM_022650, intron 8 of 24) -28194 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 152.75-65 chr8 111129856 111130253 + 1 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -102621 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 131.5-8 chr10 19517004 19517229 + 1 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 211434 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 133.5-29 chr14 70608999 70609186 + 1 NA non-coding (NR_110071, exon 3 of 3) non-coding (NR_110071, exon 3 of 3) -8402 NM_001284210 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 144.25-61 chr5 32395448 32395637 + 1 NA intron (NM_016107, intron 10 of 19) intron (NM_016107, intron 10 of 19) -1067 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 169.25-13 chr11 106650513 106650876 + 1 NA Intergenic L1MA6|LINE|L1 367782 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 313.75-5 chr21 32385053 32385555 + 1 NA intron (NM_014825, intron 2 of 38) intron (NM_014825, intron 2 of 38) 7708 NM_014825 9875 Hs.473611 NM_014825 ENSG00000142207 URB1 C21orf108|NPA1 URB1 ribosome biogenesis homolog protein-coding 114.5-53 chr2 111143696 111143834 + 1 NA intron (NM_001204113, intron 4 of 5) intron (NM_001204113, intron 4 of 5) 22851 NM_138624 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 144.75-35 chr19 15057208 15057425 + 1 NA 3' UTR (NM_012114, exon 7 of 7) 3' UTR (NM_012114, exon 7 of 7) 7836 NM_012114 23581 Hs.466057 NM_012114 ENSG00000105141 CASP14 ARCI12 caspase 14 protein-coding 189.25-27 chr20 21195009 21195221 + 1 NA intron (NR_109956, intron 7 of 7) intron (NR_109956, intron 7 of 7) 23174 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 264.75-19 chr4 83045950 83046263 + 1 NA intron (NM_001258006, intron 2 of 8) (GTACT)n|Simple_repeat|Simple_repeat 10923 NM_016129 51138 Hs.190384 NM_016129 ENSG00000138663 COPS4 CSN4|SGN4 COP9 signalosome subunit 4 protein-coding 226.75-24 chr5 109494616 109495087 + 1 NA Intergenic AluSz|SINE|Alu -84877 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 168.75-50 chr5 172034869 172035255 + 1 NA Intergenic LTR16A2|LTR|ERVL -28189 NM_033645 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 182.25-47 chr5 172698791 172699013 + 1 NA Intergenic L1ME4a|LINE|L1 36737 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 135.5-2 chr1 111269165 111269371 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -11256 NR_003928 149620 Hs.736960 NM_001013621 ENSG00000203878 CHIAP2 - chitinase, acidic pseudogene 2 pseudo 293.75-17 chr9 78470039 78470414 + 1 NA Intergenic Intergenic 173101 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 212.5-19 chr16 56054461 56054790 + 1 NA Intergenic Intergenic -98594 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 140.5-106 chr7 72331435 72331616 + 1 NA intron (NM_001363460, intron 1 of 5) MER66B|LTR|ERV1 5866 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 171.5-92 chr8 129370231 129370511 + 1 NA non-coding (NR_130919, exon 3 of 4) non-coding (NR_130919, exon 3 of 4) 113771 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 168.75-56 chr7 82386056 82386257 + 1 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 57621 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 224.25-24 chr22 24528200 24528594 + 1 NA TTS (NM_016327) TTS (NM_016327) 26741 NM_031444 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 121.25-36 chr2 143368206 143368504 + 1 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 238936 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 175.5-84 chr8 135869526 135869787 + 1 NA Intergenic Intergenic 412200 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 205.5-44 chr4 37924962 37925281 + 1 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 34037 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 185.75-49 chr5 76531497 76531712 + 1 NA intron (NM_006633, intron 2 of 35) MLT1A1|LTR|ERVL-MaLR -15805 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 233.5-34 chr3 88056762 88057177 + 1 NA intron (NM_001195308, intron 3 of 3) intron (NM_001195308, intron 3 of 3) 2027 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 188.75-18 chr2 15098696 15098937 + 1 NA Intergenic MER58A|DNA|hAT-Charlie 462518 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 138.75-82 chr9 79479597 79479849 + 1 NA Intergenic Intergenic -92050 NM_001351564 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 232.5-50 chr8 138282043 138282426 + 1 NA intron (NM_015912, intron 3 of 19) L1MC1|LINE|L1 -198689 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 304.75-7 chr19 18744527 18744876 + 1 NA intron (NM_001098482, intron 3 of 14) intron (NM_001098482, intron 3 of 14) 46604 NM_000095 1311 Hs.1584 NM_000095 ENSG00000105664 COMP EDM1|EPD1|MED|PSACH|THBS5|TSP5 cartilage oligomeric matrix protein protein-coding 136.5-77 chr3 183257423 183257609 + 1 NA intron (NM_032047, intron 1 of 1) intron (NM_032047, intron 1 of 1) 4263 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 206.5-14 chr13 107367067 107367409 + 1 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -46275 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 129.25-42 chr2 70825134 70825298 + 1 NA Intergenic L1MC3|LINE|L1 -4617 NM_173535 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 166.5-98 chr8 86046453 86046774 + 1 NA TTS (NM_033126) TTS (NM_033126) 23055 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 240.5-35 chr4 67126140 67126509 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 295676 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 251.75-9 chr22 48087010 48087430 + 1 NA Intergenic Intergenic -187144 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 146.25-5 chr1 167604061 167604328 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -25999 NM_001322923 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 159.5-49 chr20 31381274 31381512 + 1 NA intron (NR_073153, intron 1 of 2) L1MD2|LINE|L1 9197 NM_153323 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 136.5-52 chr2 29038045 29038238 + 1 NA intron (NM_001321538, intron 17 of 18) intron (NM_001321538, intron 17 of 18) 36382 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 215.75-16 chr4 79597795 79598092 + 1 NA Intergenic Intergenic 105350 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 221.5-12 chr14 64834996 64835365 + 1 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -11800 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 205.5-64 chr9 74154565 74154932 + 1 NA Intergenic L1PA17|LINE|L1 -216783 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 119.25-64 chr22 42322136 42322255 + 1 NA Intergenic Intergenic -38268 NM_005650 6942 Hs.475018 NM_005650 ENSG00000100207 TCF20 AR1|DDVIBA|SPBP|TCF-20 transcription factor 20 protein-coding 168.25-45 chr4 35467439 35467651 + 1 NA Intergenic Intergenic 776394 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 190.5-70 chr7 53849130 53849361 + 1 NA Intergenic L1M6|LINE|L1 -37314 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 201.5-24 chr18 7547567 7547842 + 1 NA Intergenic Intergenic -19612 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 181.25-23 chr17 76237937 76238164 + 1 NA intron (NM_052916, intron 1 of 18) AluSx1|SINE|Alu 2443 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 130.75-38 chr2 32878418 32878630 + 1 NA intron (NR_027098, intron 2 of 5) intron (NR_027098, intron 2 of 5) -48603 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 161.5-17 chr11 42490481 42490710 + 1 NA Intergenic Intergenic -236905 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 176.25-69 chr8 61156466 61156660 + 1 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat -131407 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 162.5-42 chr2 137342486 137342777 + 1 NA intron (NM_001316349, intron 12 of 27) L1MA7|LINE|L1 577086 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 158.5-45 chr17 81735927 81736218 + 1 NA Intergenic Intergenic 23788 NM_012140 1468 Hs.548187 NM_012140 ENSG00000183048 SLC25A10 DIC solute carrier family 25 member 10 protein-coding 132.5-73 chr3 55673565 55673699 + 1 NA intron (NR_132749, intron 16 of 17) intron (NR_132749, intron 16 of 17) -14163 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 128.5-41 chr2 48991308 48991531 + 1 NA intron (NM_000145, intron 4 of 9) LTR16E2|LTR|ERVL -68184 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 150.5-11 chr11 80725007 80725276 + 1 NA Intergenic L1ME1|LINE|L1 37662 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 158.25-2 chr1 44099002 44099278 + 1 NA Intergenic AluJr|SINE|Alu -19681 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 178.5-31 chr2 118750687 118750892 + 1 NA Intergenic MIRb|SINE|MIR 97394 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 135.75-65 chr3 108891510 108891755 + 1 NA Intergenic Tigger9a|DNA|TcMar-Tigger 62214 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 164.5-78 chr6 16468719 16468939 + 1 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 230242 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 145.25-73 chr6 147454766 147455001 + 1 NA Intergenic Intergenic -53807 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 220.5-48 chr8 110121931 110122226 + 1 NA Intergenic Intergenic -146307 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 195.75-38 chr4 55859353 55859600 + 1 NA intron (NM_001024924, intron 2 of 18) L1M5|LINE|L1 5826 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 174.5-29 chr14 86798563 86798825 + 1 NA Intergenic MER110A|LTR|ERV1 -107084 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 133.25-5 chr1 195022531 195022712 + 1 NA Intergenic L1MA9|LINE|L1 1066094 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 142.25-62 chr5 181189144 181189492 + 1 NA Intergenic CpG 2590 NR_108031 102577426 Hs.277359 NR_108031 ENSG00000248473 LINC01962 - long intergenic non-protein coding RNA 1962 ncRNA 182.5-41 chr3 25182820 25183002 + 1 NA intron (NM_001290216, intron 4 of 10) MLT1C|LTR|ERVL-MaLR -157891 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 134.5-20 chr12 24786016 24786223 + 1 NA Intergenic L3|LINE|CR1 116103 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 162.5-86 chr7 120513414 120513754 + 1 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 240409 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 167.5-63 chr5 20338638 20338934 + 1 NA intron (NM_001349558, intron 1 of 15) MER52-int|LTR|ERV1 33235 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 228.75-39 chr8 122205648 122206058 + 1 NA Intergenic MIRb|SINE|MIR 362791 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 120.5-9 chr1 244913862 244914069 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -49422 NM_031844 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120 heterogeneous nuclear ribonucleoprotein U protein-coding 209.25-5 chr11 114083833 114084064 + 1 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 20737 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 262.75-5 chr11 99230380 99230754 + 1 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 209618 NM_001243271 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 210.5-24 chr17 10626370 10626774 + 1 NA Intergenic MIRb|SINE|MIR 30737 NM_002470 4621 Hs.440895 NM_002470 ENSG00000109063 MYH3 CPSKF1A|CPSKF1B|DA2A|DA2B|DA2B3|DA8|HEMHC|MYHC-EMB|MYHSE1|SMHCE myosin heavy chain 3 protein-coding 207.5-6 chr10 108942795 108943089 + 1 NA Intergenic L1ME3Cz|LINE|L1 -873649 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 208.5-20 chr14 34134814 34135256 + 1 NA Intergenic Intergenic -183961 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 148.25-40 chr2 206374151 206374357 + 1 NA Intergenic L1MA7|LINE|L1 -69278 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 237.75-18 chr17 61496180 61496612 + 1 NA Intergenic Intergenic 39908 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 169.75-40 chr20 54602036 54602264 + 1 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 126557 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 169.75-42 chr22 39709494 39709908 + 1 NA Intergenic Ricksha_b|DNA|MULE-MuDR 138948 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 253.25-6 chr11 103071563 103071926 + 1 NA intron (NM_001318740, intron 3 of 6) L1MDa|LINE|L1 20416 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 144.75-6 chr1 217161363 217161570 + 1 NA Intergenic Intergenic -23764 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 186.25-8 chr10 74649444 74649686 + 1 NA intron (NM_001369124, intron 8 of 9) AluJb|SINE|Alu -120241 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 150.5-15 chr12 2730050 2730239 + 1 NA Intergenic L1PA16|LINE|L1 -38987 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 180.5-48 chr2 233679975 233680248 + 1 NA intron (NM_021027, intron 1 of 4) Tigger2|DNA|TcMar-Tigger -1827 NM_019077 54577 Hs.554822 NM_019077 ENSG00000244122 UGT1A7 GNT1|UDPGT|UDPGT 1-7|UGT-1A|UGT-1G|UGT1|UGT1-01|UGT1-07|UGT1.1|UGT1.7|UGT1A|UGT1A1|UGT1G|hUG-BR1 UDP glucuronosyltransferase family 1 member A7 protein-coding 139.25-43 chr17 71320581 71320810 + 1 NA Intergenic L2a|LINE|L2 -118516 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 167.5-91 chr9 3647223 3647451 + 1 NA Intergenic Intergenic -20749 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 129.5-43 chr2 80625700 80625884 + 1 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 312413 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 204.5-53 chr7 2819328 2819624 + 1 NA intron (NM_001293092, intron 1 of 2) MLT1E3|LTR|ERVL-MaLR -4246 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 192.75-42 chr7 15405457 15405777 + 1 NA intron (NM_001004320, intron 5 of 12) intron (NM_001004320, intron 5 of 12) 156398 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 243.5-2 chr1 198104989 198105350 + 1 NA Intergenic Intergenic -51829 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 129.5-55 chr22 40606101 40606303 + 1 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 30517 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 153.5-86 chr7 13733209 13733515 + 1 NA Intergenic Intergenic 253152 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 172.75-33 chr5 41983357 41983540 + 1 NA Intergenic Intergenic 58167 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 120.75-14 chr11 38574409 38574641 + 1 NA Intergenic Intergenic 71831 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 134.75-12 chr10 102928323 102928478 + 1 NA TTS (NM_199077) TTS (NM_199077) -10065 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 195.5-47 chr2 191076286 191076556 + 1 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 54895 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 116.75-51 chr3 53013253 53013570 + 1 NA intron (NM_016329, intron 1 of 20) intron (NM_016329, intron 1 of 20) 32662 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 180.5-21 chr12 22873468 22873788 + 1 NA Intergenic Intergenic 248457 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 210.25-37 chr5 91853815 91854157 + 1 NA Intergenic Intergenic -470669 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 132.75-102 chr8 134014449 134014617 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 128037 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 138.25-76 chr5 118664436 118664635 + 1 NA Intergenic L1PA16|LINE|L1 68347 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 122.25-5 chr1 213458361 213458543 + 1 NA Intergenic L1PA16|LINE|L1 407211 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 166.25-55 chr7 146541445 146541797 + 1 NA Intergenic Intergenic -232650 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 115.75-51 chr20 62039875 62040201 + 1 NA intron (NM_003185, intron 1 of 14) L1ME1|LINE|L1 -24764 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 195.25-13 chr14 22226722 22227073 + 1 NA Intergenic Intergenic 205856 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 174.5-73 chr7 21097991 21098241 + 1 NA Intergenic Intergenic 262685 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 172.5-34 chr2 163439280 163439551 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR 296593 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 147.5-60 chr3 101119590 101119820 + 1 NA Intergenic MER103C|DNA|hAT-Charlie -126215 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 172.75-51 chrX 48614909 48615212 + 1 NA Intergenic Intergenic 17568 NR_029427 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 191.25-4 chr1 198027425 198027644 + 1 NA Intergenic Intergenic 110162 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 136.25-79 chr8 85883137 85883288 + 1 NA Intergenic Intergenic -55270 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 167.5-68 chr5 86021279 86021638 + 1 NA Intergenic Intergenic -260986 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 182.5-7 chr1 169808599 169808872 + 1 NA intron (NM_001320047, intron 9 of 24) AluSx1|SINE|Alu 13695 NM_001366768 55732 Hs.443551 NM_018186 ENSG00000000460 C1orf112 - chromosome 1 open reading frame 112 protein-coding 257.25-23 chr9 90893371 90893660 + 1 NA intron (NM_001174167, intron 13 of 13) GA-rich|Low_complexity|Low_complexity 66095 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 178.25-50 chr5 112003341 112003611 + 1 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -26544 NM_001142474 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 171.25-30 chr20 52846924 52847256 + 1 NA Intergenic Intergenic -125268 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 181.5-38 chr2 71860487 71860711 + 1 NA Intergenic L2c|LINE|L2 287263 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 162.5-22 chr13 57526650 57526870 + 1 NA Intergenic MER67C|LTR|ERV1 -104984 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 142.25-2 chr1 55754161 55754430 + 1 NA Intergenic L1MEd|LINE|L1 190668 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 184.5-35 chr18 45722398 45722659 + 1 NA Intergenic Intergenic -1653 NM_001308279 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 158.75-59 chr5 109897581 109897836 + 1 NA Intergenic Intergenic 14526 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 152.25-8 chr10 27822625 27822895 + 1 NA intron (NM_018076, intron 19 of 19) intron (NM_018076, intron 19 of 19) -76941 NM_001242702 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 226.5-32 chr2 227535246 227535692 + 1 NA intron (NM_004504, intron 8 of 12) intron (NM_004504, intron 8 of 12) 63297 NM_004504 3267 Hs.352962 NM_004504 ENSG00000173744 AGFG1 HRB|RAB|RIP ArfGAP with FG repeats 1 protein-coding 119.5-3 chr1 51890328 51890482 + 1 NA Intergenic L1MC4|LINE|L1 -11468 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 356.5-7 chr8 125823516 125824233 + 1 NA Intergenic MIRc|SINE|MIR 127323 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 176.5-74 chr5 106217122 106217408 + 1 NA Intergenic Intergenic 793749 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 200.25-23 chr2 49510909 49511219 + 1 NA Intergenic AluSp|SINE|Alu -356537 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 158.5-4 chr1 74931112 74931321 + 1 NA Intergenic L1MC1|LINE|L1 -197218 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 261.5-28 chr6 131101229 131101517 + 1 NA Intergenic Intergenic -34094 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 132.5-115 chr8 122206229 122206494 + 1 NA Intergenic Intergenic 362283 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 142.75-16 chr10 62989804 62989978 + 1 NA Intergenic Intergenic -143356 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 118.75-14 chr11 26161639 26161765 + 1 NA Intergenic Intergenic -27421 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 158.75-3 chr1 230931911 230932155 + 1 NA intron (NM_024525, intron 9 of 22) intron (NM_024525, intron 9 of 22) 46828 NM_024525 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 212.25-26 chr21 30586242 30586588 + 1 NA Intergenic L1ME1|LINE|L1 3982 NM_001164434 100288287 Hs.580880 NM_001164434 ENSG00000206106 KRTAP22-2 KAP22.2 keratin associated protein 22-2 protein-coding 291.75-5 chr16 8372198 8372649 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 217415 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 134.25-15 chr12 123508571 123508768 + 1 NA intron (NM_178314, intron 2 of 6) L1ME3|LINE|L1 11557 NM_001319244 353116 Hs.530315 NM_178314 ENSG00000188026 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein like 1 protein-coding 117.5-26 chr15 62821069 62821273 + 1 NA intron (NM_015059, intron 51 of 55) intron (NM_015059, intron 51 of 55) -2786 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 177.75-8 chr12 84087573 84087872 + 1 NA Intergenic L1MB3|LINE|L1 825077 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 201.75-6 chr10 127139726 127140125 + 1 NA intron (NM_001039762, intron 5 of 5) intron (NM_001039762, intron 5 of 5) 56666 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 122.5-99 chr9 25091851 25092029 + 1 NA Intergenic Intergenic -546043 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 165.75-46 chr4 44202060 44202353 + 1 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 185144 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 170.75-26 chr16 13399019 13399220 + 1 NA Intergenic AluSx3|SINE|Alu 497521 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 188.5-58 chr9 10842562 10842922 + 1 NA Intergenic L1MEc|LINE|L1 229536 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 193.5-28 chr2 98453279 98453657 + 1 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 7458 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 114.5-104 chr8 77423888 77424050 + 1 NA Intergenic MER58D|DNA|hAT-Charlie -26728 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 314.5-15 chr8 129880839 129881406 + 1 NA intron (NM_001353307, intron 4 of 13) intron (NM_001353307, intron 4 of 13) 58689 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 184.25-26 chr20 53784040 53784271 + 1 NA Intergenic L1ME1|LINE|L1 91554 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 142.5-5 chr1 220263001 220263338 + 1 NA intron (NM_012414, intron 1 of 34) L1MB2|LINE|L1 4546 NR_001587 6791 Hs.654849 NR_001587 AURKAP1 AURKAPS1|AurAps1|STK6P aurora kinase A pseudogene 1 pseudo 126.25-32 chr16 194968 195147 + 1 NA intron (NM_001330420, intron 6 of 9) intron (NM_001330420, intron 6 of 9) 14598 NM_005331 3049 Hs.247921 NM_005331 ENSG00000086506 HBQ1 HBQ hemoglobin subunit theta 1 protein-coding 126.5-78 chr4 41306148 41306347 + 1 NA Intergenic AluSz|SINE|Alu 49319 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 164.5-63 chr3 190657420 190657705 + 1 NA 3' UTR (NM_001167931, exon 12 of 12) 3' UTR (NM_001167931, exon 12 of 12) 143477 NM_134470 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 168.75-61 chr8 121396638 121396931 + 1 NA Intergenic Charlie7|DNA|hAT-Charlie -242562 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 152.75-69 chrX 41793246 41793550 + 1 NA intron (NM_003688, intron 2 of 26) intron (NM_003688, intron 2 of 26) 69217 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 114.25-90 chr6 124243962 124244205 + 1 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -38922 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 132.5-67 chr21 29194384 29194526 + 1 NA intron (NR_027072, intron 1 of 1) LTR37A|LTR|ERV1 961 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 175.5-33 chr16 72204506 72204873 + 1 NA Intergenic Intergenic -32239 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 126.25-81 chr6 162812817 162813195 + 1 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 85036 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 146.75-21 chr18 7196779 7196960 + 1 NA Intergenic L1ME1|LINE|L1 -34235 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 141.5-99 chr6 50757035 50757288 + 1 NA intron (NM_172238, intron 7 of 7) intron (NM_172238, intron 7 of 7) 43617 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 115.5-18 chr11 102285100 102285304 + 1 NA Intergenic Intergenic -32282 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 186.5-29 chr2 66064245 66064548 + 1 NA Intergenic Intergenic 293932 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 113.25-40 chr14 66679964 66680129 + 1 NA intron (NM_001024218, intron 1 of 21) L1MEg|LINE|L1 172639 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 172.5-59 chr5 27569198 27569410 + 1 NA Intergenic Intergenic 97012 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 170.5-77 chr7 84175201 84175510 + 1 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 19434 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 133.25-49 chr2 223097840 223098114 + 1 NA Intergenic L1MD2|LINE|L1 46047 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 188.25-19 chr18 8654339 8654744 + 1 NA Intergenic Intergenic 45096 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 263.75-16 chr7 6548239 6548790 + 1 NA intron (NM_001145118, intron 1 of 21) L1MA1|LINE|L1 2922 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 215.25-18 chr21 16112569 16112838 + 1 NA intron (NR_111005, intron 1 of 6) MLT1J2-int|LTR|ERVL-MaLR 41589 NR_111005 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 174.5-60 chr3 189416881 189417112 + 1 NA Intergenic L1ME3E|LINE|L1 -176402 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 126.25-74 chr5 113385880 113386048 + 1 NA intron (NM_001085377, intron 1 of 18) A-rich|Low_complexity|Low_complexity 49025 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 122.25-68 chr4 30905681 30905820 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 185381 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 234.5-43 chr9 15150586 15150968 + 1 NA Intergenic Intergenic 99441 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 261.25-9 chr5 94095967 94096393 + 1 NA intron (NM_032042, intron 1 of 10) intron (NM_032042, intron 1 of 10) 15483 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 115.25-76 chr5 57956431 57956635 + 1 NA Intergenic Intergenic -57371 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 164.5-62 chr3 187650056 187650341 + 1 NA Intergenic Intergenic 20196 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 186.5-23 chr15 46153453 46153789 + 1 NA Intergenic Intergenic 448426 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 157.5-40 chr19 35959582 35959754 + 1 NA non-coding (NR_136525, exon 4 of 5) non-coding (NR_136525, exon 4 of 5) 12553 NR_136525 105372383 Hs.641592 NR_136525 LOC105372383 - uncharacterized LOC105372383 ncRNA 190.5-45 chr3 89128353 89128714 + 1 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 20912 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 130.5-49 chr2 188612119 188612301 + 1 NA Intergenic HERV16-int|LTR|ERVL 177913 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 135.25-59 chr22 34935670 34935889 + 1 NA intron (NR_138042, intron 1 of 4) L2c|LINE|L2 62137 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 133.5-103 chr6 131743740 131743968 + 1 NA intron (NR_133007, intron 23 of 23) (AAAAT)n|Simple_repeat|Simple_repeat -32837 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 124.25-44 chr19 8681474 8681695 + 1 NA Intergenic Intergenic 17211 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 142.5-10 chr10 24455558 24455761 + 1 NA intron (NM_001321681, intron 1 of 13) intron (NM_001321681, intron 1 of 13) 6245 NM_001321681 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 280.25-20 chr6 39444389 39444828 + 1 NA intron (NM_001289021, intron 12 of 21) L1MA9|LINE|L1 -13218 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 274.25-18 chr9 34436607 34437094 + 1 NA intron (NM_001184942, intron 1 of 5) MIRb|SINE|MIR 21720 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 139.75-7 chr1 152732851 152733014 + 1 NA Intergenic AluSp|SINE|Alu 13410 NM_001024679 100129271 Hs.601077 NM_001024679 ENSG00000198854 C1orf68 LEP7|XP32 chromosome 1 open reading frame 68 protein-coding 134.5-96 chr8 125487107 125487292 + 1 NA Intergenic MIR|SINE|MIR 54990 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 197.5-45 chr3 191052171 191052419 + 1 NA Intergenic Intergenic -146946 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 202.75-27 chr7 38558114 38558354 + 1 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 73139 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 204.5-25 chr2 8958337 8958719 + 1 NA non-coding (NR_135598, exon 2 of 14) non-coding (NR_135598, exon 2 of 14) 45156 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 131.5-61 chr3 177018257 177018411 + 1 NA Intergenic Intergenic 178144 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 223.75-6 chr12 81250544 81250875 + 1 NA intron (NM_024560, intron 13 of 15) intron (NM_024560, intron 13 of 15) -28480 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 179.5-79 chr6 40383835 40384074 + 1 NA Intergenic Intergenic 5617 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 142.5-11 chr10 31873128 31873315 + 1 NA intron (NM_001270696, intron 3 of 17) Charlie5|DNA|hAT-Charlie 35705 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 176.25-52 chr5 20187220 20187453 + 1 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -118215 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 231.5-47 chr8 88484337 88484749 + 1 NA Intergenic L1PA12|LINE|L1 -157060 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 184.5-20 chr12 19110533 19110782 + 1 NA Intergenic Intergenic -19076 NM_001190860 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 213.75-40 chr6 70806766 70807185 + 1 NA intron (NM_001044305, intron 6 of 10) intron (NM_001044305, intron 6 of 10) 138445 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 163.75-48 chr4 56547721 56547980 + 1 NA intron (NM_001256475, intron 1 of 8) intron (NM_001256475, intron 1 of 8) 17244 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 113.5-53 chr18 67011749 67011956 + 1 NA Intergenic Intergenic -69732 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 146.25-76 chr8 132621954 132622137 + 1 NA intron (NR_135913, intron 6 of 10) intron (NR_135913, intron 6 of 10) 53500 NR_135905 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 155.5-40 chr17 19339383 19339632 + 1 NA intron (NM_001321219, intron 5 of 5) MLT1J2-int|LTR|ERVL-MaLR 5067 NR_031591 100302256 NR_031591 ENSG00000221540 MIR1180 MIRN1180|hsa-mir-1180|mir-1180 microRNA 1180 ncRNA 206.5-22 chr16 35192501 35192805 + 1 NA Intergenic Intergenic -3106 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 195.75-40 chr5 3460447 3460790 + 1 NA intron (NR_147000, intron 2 of 2) intron (NR_147000, intron 2 of 2) 7802 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 119.25-87 chr7 53922522 53922761 + 1 NA Intergenic Intergenic -110710 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 255.5-6 chr13 41672898 41673345 + 1 NA intron (NM_015058, intron 36 of 44) intron (NM_015058, intron 36 of 44) -104726 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 145.5-50 chr2 136461371 136461565 + 1 NA Intergenic Intergenic -304077 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 150.25-84 chrX 47435504 47435726 + 1 NA Intergenic AluJb|SINE|Alu 32054 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 133.25-65 chr5 42425999 42426186 + 1 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 1111 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 155.75-5 chr10 27270143 27270431 + 1 NA intron (NR_138082, intron 2 of 4) L1MB4|LINE|L1 11525 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 193.5-10 chr10 98247559 98247826 + 1 NA TTS (NM_032211) TTS (NM_032211) 20502 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 207.5-16 chr14 65664331 65664653 + 1 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 193390 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 144.75-43 chr2 76830858 76831022 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -155025 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 230.25-19 chr3 65844098 65844445 + 1 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -49545 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 162.25-39 chr5 123204753 123205098 + 1 NA Intergenic L1MB3|LINE|L1 -114609 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 223.5-24 chr14 29918196 29918581 + 1 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 8708 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 191.5-53 chr5 50857941 50858244 + 1 NA Intergenic AluSz|SINE|Alu 112095 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 121.75-53 chr22 26707450 26707639 + 1 NA intron (NR_110543, intron 1 of 5) Tigger19b|DNA|TcMar-Tigger 34701 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 211.75-32 chr5 152750145 152750570 + 1 NA intron (NR_109877, intron 3 of 4) L1MA9|LINE|L1 221992 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 174.25-37 chr20 337881 338068 + 1 NA Intergenic L1MB3|LINE|L1 -8752 NR_136649 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 142.5-80 chr5 133132885 133133098 + 1 NA Intergenic L1M5|LINE|L1 80978 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 247.75-10 chr2 32215622 32215913 + 1 NA intron (NM_001330476, intron 10 of 10) AluJr|SINE|Alu 49119 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 213.5-18 chr15 97035176 97035552 + 1 NA Intergenic Intergenic 251929 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 136.5-22 chr11 111361775 111361976 + 1 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 14118 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 220.25-28 chr3 18138521 18138855 + 1 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 176136 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 133.75-74 chr8 86328137 86328442 + 1 NA Intergenic Intergenic -14258 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 136.5-23 chr12 34564822 34565051 + 1 NA Intergenic ALR/Alpha|Satellite|centr 542440 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 150.75-48 chr3 116197893 116198132 + 1 NA intron (NM_001318915, intron 1 of 8) L2c|LINE|L2 -162012 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 190.25-12 chr10 95511018 95511456 + 1 NA intron (NM_001290295, intron 1 of 24) AluJr|SINE|Alu 50134 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 217.75-16 chr17 30106280 30106517 + 1 NA intron (NM_198529, intron 22 of 22) L2a|LINE|L2 -10409 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 229.25-22 chr5 30998521 30998835 + 1 NA Intergenic Intergenic -195008 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 191.5-64 chr7 30408739 30409048 + 1 NA Intergenic Intergenic 18008 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 209.5-12 chr18 7732146 7732427 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 164970 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 180.5-61 chr3 103928202 103928419 + 1 NA Intergenic Intergenic -404194 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 147.75-5 chr1 154656222 154656397 + 1 NA Intergenic L1M4c|LINE|L1 -28312 NM_001365045 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 194.5-30 chr2 31734813 31735090 + 1 NA Intergenic Intergenic 69029 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 223.5-37 chr2 161319171 161319584 + 1 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 10952 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 151.75-35 chr17 74089556 74089912 + 1 NA Intergenic Intergenic -113944 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 252.5-3 chr10 110428046 110428315 + 1 NA Intergenic Intergenic -69727 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 119.5-73 chr22 28329365 28329575 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -130399 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 272.5-6 chr20 40522727 40523076 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR 166335 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 173.5-108 chr9 129002543 129002747 + 1 NA intron (NM_015354, intron 36 of 43) MIR3|SINE|MIR 25686 NR_163192 56904 Hs.460238 NM_020145 ENSG00000148341 SH3GLB2 PP6569|PP9455|RRIG1 SH3 domain containing GRB2 like, endophilin B2 protein-coding 226.5-6 chr1 179658902 179659262 + 1 NA intron (NM_001199085, intron 14 of 17) L1ME1|LINE|L1 52855 NM_001199092 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 213.5-25 chr2 72356969 72357328 + 1 NA intron (NR_135774, intron 17 of 19) Tigger7|DNA|TcMar-Tigger -209286 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 126.75-28 chr16 5016795 5016988 + 1 NA 3' UTR (NM_014692, exon 16 of 16) 3' UTR (NM_014692, exon 16 of 16) -16811 NR_038913 100507589 Hs.729936 NR_038913 NAGPA-AS1 - NAGPA antisense RNA 1 ncRNA 171.5-55 chr3 89313528 89313747 + 1 NA intron (NM_182644, intron 3 of 6) L1M4a1|LINE|L1 206016 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 160.5-48 chr3 40861016 40861241 + 1 NA Intergenic L1M5|LINE|L1 336168 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 164.5-40 chr2 176475685 176475980 + 1 NA Intergenic AluJr|SINE|Alu 125220 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 228.75-6 chr11 66487762 66488085 + 1 NA exon (NM_001256670, exon 5 of 17) exon (NM_001256670, exon 5 of 17) 7489 NM_001256670 10072 Hs.502914 NM_005700 ENSG00000254986 DPP3 DPPIII dipeptidyl peptidase 3 protein-coding 148.5-38 chr17 57446771 57446961 + 1 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 76731 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 217.5-15 chr16 84011902 84012206 + 1 NA intron (NM_001080442, intron 9 of 9) MLT1C|LTR|ERVL-MaLR 30103 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 152.75-30 chr2 73327402 73327687 + 1 NA Intergenic AluJr|SINE|Alu -33996 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 217.25-9 chr11 96089957 96090404 + 1 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -165973 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 190.5 chr1 14690745 14691157 + 1 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 92234 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 211.5-34 chr3 96313657 96314057 + 1 NA Intergenic Intergenic -46107 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 137.5-11 chr10 58080701 58080944 + 1 NA Intergenic Intergenic 187072 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 114.5-8 chr10 68967625 68967803 + 1 NA intron (NM_001256910, intron 6 of 14) intron (NM_001256910, intron 6 of 14) 11274 NM_001256910 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 176.25-72 chr9 78420845 78421045 + 1 NA Intergenic AluSz|SINE|Alu 123820 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 125.5-5 chr1 95732664 95732866 + 1 NA Intergenic MLT2B2|LTR|ERVL 222649 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 149.5-13 chr10 72045297 72045570 + 1 NA Intergenic L1M5|LINE|L1 43118 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 178.5-19 chr15 69974920 69975144 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 104436 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 254.25-10 chr2 89839878 89840239 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202151 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 251.5-33 chr8 121118779 121119269 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -306978 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 149.5-20 chr12 15938844 15939009 + 1 NA intron (NM_015954, intron 1 of 8) intron (NM_015954, intron 1 of 8) 27594 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 174.5-49 chr21 37173168 37173604 + 1 NA intron (NM_003316, intron 35 of 45) intron (NM_003316, intron 35 of 45) 20540 NR_046651 100874006 Hs.570411 NR_046651 ENSG00000228677 TTC3-AS1 - TTC3 antisense RNA 1 ncRNA 136.5-112 chr9 36901823 36902039 + 1 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -8400 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 212.75-23 chr3 116100221 116100617 + 1 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -195293 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 152.5-106 chr9 73390651 73390915 + 1 NA Intergenic L1M4|LINE|L1 238918 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 217.75-2 chr1 53036140 53036419 + 1 NA intron (NM_001007250, intron 2 of 3) L1ME4b|LINE|L1 21341 NM_001007250 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 216.25-2 chr1 99250947 99251184 + 1 NA Intergenic LOR1a|LTR|ERV1 -13227 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 197.25-43 chr3 106505786 106506197 + 1 NA Intergenic L1MEh|LINE|L1 -636590 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 149.5-56 chr2 113973876 113974151 + 1 NA intron (NR_148507, intron 2 of 2) intron (NR_148507, intron 2 of 2) 4691 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 137.75-87 chr8 126059164 126059380 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -108075 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 295.5-23 chr6 132005985 132006390 + 1 NA Intergenic AluSz|SINE|Alu -54815 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 233.5-6 chr10 31119038 31119369 + 1 NA Intergenic Intergenic -68680 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 217.5-16 chr18 2951234 2951651 + 1 NA intron (NM_014646, intron 3 of 19) intron (NM_014646, intron 3 of 19) -4819 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 137.5-66 chr2 211925572 211925722 + 1 NA intron (NM_001042599, intron 3 of 26) AluSg4|SINE|Alu 500713 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 127.75-30 chr14 62033191 62033346 + 1 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -84089 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 275.5-14 chr2 6497094 6497533 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -121891 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 121.5-40 chr15 77115718 77115911 + 1 NA intron (NM_024776, intron 7 of 7) intron (NM_024776, intron 7 of 7) -44705 NM_005724 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 115.75-56 chr22 42663479 42663620 + 1 NA Intergenic Intergenic -14157 NM_000398 1727 Hs.561064 NM_000398 ENSG00000100243 CYB5R3 B5R|DIA1 cytochrome b5 reductase 3 protein-coding 153.25-11 chr11 77281979 77282237 + 1 NA intron (NM_182833, intron 3 of 16) L1MEg|LINE|L1 19558 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 137.25-26 chr13 34894822 34895187 + 1 NA Intergenic Intergenic -47283 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 135.75-68 chr3 193638560 193638766 + 1 NA intron (NM_130831, intron 8 of 27) MER75|DNA|PiggyBac -11331 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 193.25-32 chr4 181659401 181659742 + 1 NA Intergenic Intergenic 170402 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 141.75-67 chr5 79755187 79755328 + 1 NA intron (NM_153610, intron 6 of 12) intron (NM_153610, intron 6 of 12) 65421 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 121.5-104 chr7 78621198 78621424 + 1 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 274069 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 189.5-28 chr2 78144687 78144968 + 1 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 56097 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 167.5-54 chr3 113163668 113163992 + 1 NA intron (NR_110823, intron 2 of 3) intron (NR_110823, intron 2 of 3) 3901 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 143.5-103 chr8 119504049 119504252 + 1 NA Intergenic AluJr|SINE|Alu 87704 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 119.5-117 chr7 94875208 94875386 + 1 NA Intergenic Intergenic -32297 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 133.5-34 chr15 64092153 64092470 + 1 NA intron (NR_110310, intron 1 of 5) L2c|LINE|L2 1527 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 198.75-40 chr5 132007781 132007994 + 1 NA intron (NM_001205250, intron 1 of 20) intron (NM_001205250, intron 1 of 20) 3771 NM_001205247 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 117.5-64 chr3 151794567 151794733 + 1 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) -19466 NM_001086 13 Hs.506908 NM_001086 ENSG00000114771 AADAC CES5A1|DAC arylacetamide deacetylase protein-coding 272.5-15 chr4 122469663 122470160 + 1 NA Intergenic Intergenic -13416 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 124.5-81 chr4 185879932 185880067 + 1 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -67743 NM_003603 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 112.75-59 chr3 50009436 50009586 + 1 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) 69361 NM_001349193 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 235.25-30 chr8 79228244 79228733 + 1 NA Intergenic L1MA1|LINE|L1 -103700 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 149.25-52 chr5 61776179 61776353 + 1 NA Intergenic L1ME1|LINE|L1 -40568 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 119.5-101 chr5 76532690 76532852 + 1 NA intron (NM_006633, intron 2 of 35) LTR78|LTR|ERV1 -14638 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 270.5-22 chr5 18644079 18644368 + 1 NA Intergenic Intergenic 836949 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 133.25-35 chr18 3442847 3443011 + 1 NA intron (NM_001278686, intron 2 of 3) L1ME3G|LINE|L1 -4613 NM_173207 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 126.5-41 chr17 54304082 54304376 + 1 NA Intergenic Intergenic 481302 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 201.5-40 chr4 32894196 32894443 + 1 NA Intergenic MIR|SINE|MIR 543281 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 167.5-25 chr15 68131021 68131347 + 1 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 74926 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 145.75-37 chr2 94540378 94540633 + 1 NA Intergenic ALR/Alpha|Satellite|centr 46678 NR_024443 100133920 Hs.645503 NR_024443 ENSG00000261522 LOC100133920 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 132.5-101 chr6 98670247 98670505 + 1 NA Intergenic Intergenic 161324 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 141.75-16 chr12 60520510 60520681 + 1 NA Intergenic Intergenic 831225 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 153.5-9 chr10 20516446 20516606 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -35444 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 139.5-43 chr2 83733451 83733703 + 1 NA Intergenic Intergenic 210763 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 146.25-79 chrX 100078070 100078336 + 1 NA Intergenic Intergenic 332070 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 139.5-11 chr10 115892052 115892242 + 1 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 302642 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 162.25-30 chr4 45710810 45711197 + 1 NA Intergenic Intergenic 413051 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 140.5-95 chr6 46478215 46478387 + 1 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 13022 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 140.25-96 chr9 72855363 72855740 + 1 NA Intergenic MIR3|SINE|MIR 18558 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 141.75-73 chr6 38839025 38839300 + 1 NA intron (NM_001371, intron 32 of 91) MER5A|DNA|hAT-Charlie 113945 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 226.5-17 chr14 64943653 64943996 + 1 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) -1079 NR_046320 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 141.5-15 chr10 83555512 83555760 + 1 NA Intergenic L1MC3|LINE|L1 121453 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 123.5-28 chr12 103175083 103175251 + 1 NA Intergenic Intergenic 23325 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 148.5-85 chr5 128624095 128624360 + 1 NA Intergenic Intergenic -85982 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 128.75-83 chr7 54280911 54281230 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR -49627 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 148.75-78 chrX 41359148 41359309 + 1 NA intron (NR_126093, intron 18 of 18) intron (NR_126093, intron 18 of 18) 25062 NM_001363819 1654 Hs.728563 NM_001356 ENSG00000215301 DDX3X CAP-Rf|DBX|DDX14|DDX3|HLP2|MRX102 DEAD-box helicase 3 X-linked protein-coding 212.75-35 chr8 85510617 85510943 + 1 NA Intergenic AluSx1|SINE|Alu -45865 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 269.75-18 chr8 129511149 129511463 + 1 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -27164 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 117.5-55 chr2 192305341 192305507 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -110491 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 246.5-16 chr5 31958548 31958931 + 1 NA intron (NM_178140, intron 2 of 24) AluJr|SINE|Alu -22580 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 402.75-4 chr6 150403250 150403788 + 1 NA non-coding (NR_134655, exon 6 of 6) non-coding (NR_134655, exon 6 of 6) 34507 NM_001164694 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 161.25-51 chr3 39339440 39339695 + 1 NA Intergenic L1MEg|LINE|L1 9858 NM_005201 1237 Hs.113222 NM_005201 ENSG00000179934 CCR8 CC-CKR-8|CCR-8|CDw198|CKRL1|CMKBR8|CMKBRL2|CY6|GPRCY6|TER1 C-C motif chemokine receptor 8 protein-coding 173.5-7 chr10 96924617 96924841 + 1 NA intron (NM_001170766, intron 4 of 8) L1MC4|LINE|L1 91784 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 139.25-5 chr1 185225906 185226170 + 1 NA intron (NM_017673, intron 15 of 18) intron (NM_017673, intron 15 of 18) 68871 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 196.25-11 chr12 12254286 12254752 + 1 NA intron (NM_002336, intron 1 of 22).2 MER92-int|LTR|ERV1 12525 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 134.5-16 chr11 77804935 77805138 + 1 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 15798 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 221.75-14 chr2 103545295 103545733 + 1 NA Intergenic L1M5|LINE|L1 -561085 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 135.5-20 chr11 121727484 121727695 + 1 NA Intergenic Intergenic 275275 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 145.5-17 chr11 48592623 48592788 + 1 NA Intergenic L1MEc|LINE|L1 103912 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 158.75-40 chr20 56795652 56795827 + 1 NA Intergenic L2b|LINE|L2 166433 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 190.75-13 chr11 16660102 16660376 + 1 NA intron (NM_001367872, intron 2 of 16) L1MC2|LINE|L1 78238 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 193.5-51 chr4 12696942 12697177 + 1 NA Intergenic L1ME2z|LINE|L1 473608 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 140.5-104 chr7 11681928 11682160 + 1 NA intron (NM_015204, intron 1 of 26) L1PA17|LINE|L1 150154 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 120.5-99 chr7 41739455 41739628 + 1 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -36451 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 114.5-76 chr4 49708768 49708923 + 1 NA Intergenic ALR/Alpha|Satellite|centr 722203 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 172.25-3 chr1 212586847 212587145 + 1 NA intron (NM_001030287, intron 1 of 3) intron (NM_001030287, intron 1 of 3) 21662 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 161.5-6 chr1 102670138 102670377 + 1 NA Intergenic AluY|SINE|Alu 438239 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 287.5-16 chr2 102775640 102775971 + 1 NA intron (NM_001321346, intron 3 of 3) L1P1|LINE|L1 13774 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 204.75-35 chr4 65191196 65191673 + 1 NA Intergenic L1PA15|LINE|L1 -186934 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 149.5-86 chr5 118833549 118833820 + 1 NA Intergenic L1M2|LINE|L1 -140902 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 297.5-4 chr2 16424363 16424872 + 1 NA Intergenic Intergenic 241217 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 225.5-36 chr4 101642260 101642576 + 1 NA Intergenic MIR3|SINE|MIR -148189 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 242.5-2 chr1 177838866 177839172 + 1 NA Intergenic Intergenic 130903 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 134.25-74 chr5 156472908 156473142 + 1 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 145861 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 177.5-35 chr2 107188439 107188759 + 1 NA intron (NR_049853, intron 2 of 3) L1PA13|LINE|L1 160926 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 138.5-110 chr9 85211128 85211285 + 1 NA Intergenic L2c|LINE|L2 505305 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 182.5-35 chr2 192335736 192336030 + 1 NA Intergenic MER106B|DNA|hAT-Charlie -140950 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 165.25-55 chr8 109980476 109980922 + 1 NA Intergenic AluSq2|SINE|Alu -4928 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 229.25-9 chr18 12387718 12387977 + 1 NA Intergenic L1MB8|LINE|L1 -10571 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 114.25-10 chr10 9513856 9514047 + 1 NA Intergenic Intergenic -218358 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 184.75-17 chr12 115710832 115711125 + 1 NA Intergenic Intergenic 437676 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 125.75-56 chr4 57487968 57488198 + 1 NA Intergenic Intergenic 62211 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 175.5-62 chr5 140767635 140767828 + 1 NA Intergenic L1M4|LINE|L1 -18405 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 173.25-20 chr16 8304845 8305260 + 1 NA Intergenic Intergenic 284786 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 128.5-87 chr6 96529979 96530108 + 1 NA intron (NM_015323, intron 6 of 18) L1MC4|LINE|L1 8237 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 143.25-4 chr1 199584480 199584736 + 1 NA Intergenic Intergenic 436010 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 136.75-16 chr10 119945190 119945436 + 1 NA TTS (NR_037771) TTS (NR_037771) -13200 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 164.75-29 chr18 7822286 7822581 + 1 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 255117 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 325.5-2 chr10 18817199 18817845 + 1 NA Intergenic Intergenic 158091 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 145.75-64 chr6 156289501 156289886 + 1 NA Intergenic Intergenic -89057 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 113.5-84 chr4 36149860 36150029 + 1 NA intron (NR_146894, intron 16 of 32) intron (NR_146894, intron 16 of 32) 93995 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 128.5-44 chr2 100323543 100323694 + 1 NA promoter-TSS (NM_198461) promoter-TSS (NM_198461) -885 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 130.5-10 chr1 188286138 188286392 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 842637 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 156.5-80 chr7 159142437 159142653 + 1 NA exon (NM_003382, exon 2 of 13) exon (NM_003382, exon 2 of 13) 2322 NM_003382 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 139.25-74 chr7 28464123 28464460 + 1 NA intron (NM_004904, intron 1 of 10) L1MB7|LINE|L1 28676 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 125.5-40 chr14 50327865 50328035 + 1 NA TTS (NM_001003803) TTS (NM_001003803) 15626 NM_001003805 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 144.5-56 chr2 53191098 53191399 + 1 NA Intergenic MER45B|DNA|hAT-Tip100 -488633 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 161.25-73 chr6 125028326 125028597 + 1 NA intron (NM_152553, intron 3 of 8) L1M3|LINE|L1 45093 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 156.25-63 chr6 2613665 2613887 + 1 NA Intergenic Intergenic -20724 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 201.25-23 chr3 49156478 49156964 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -2320 NR_004405 22973 Hs.607092 NR_004405 LAMB2P1 LAMB2L laminin subunit beta 2 pseudogene 1 pseudo 233.75-32 chr7 40036007 40036474 + 1 NA intron (NM_003718, intron 5 of 13) intron (NM_003718, intron 5 of 13) 85880 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 178.75-53 chr7 27918631 27918872 + 1 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 178656 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 178.25-7 chr1 114160610 114160803 + 1 NA Intergenic L2c|LINE|L2 -6837 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 116.25-8 chr1 232907538 232907697 + 1 NA Intergenic Intergenic -42994 NR_138025 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 141.5-33 chr14 75541330 75541642 + 1 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 19017 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 145.5-11 chr10 21425986 21426165 + 1 NA Intergenic Intergenic -53125 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 157.75-17 chr11 46141767 46142031 + 1 NA Intergenic AluJb|SINE|Alu -20914 NM_001352031 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 168.25-38 chr3 5774516 5774830 + 1 NA Intergenic LTR19A|LTR|ERV1 -524418 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 157.5-54 chr2 116991889 116992084 + 1 NA Intergenic MIRb|SINE|MIR -822705 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 180.75-12 chr10 51081525 51081831 + 1 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 7191 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 148.5-114 chr9 78612236 78612572 + 1 NA Intergenic Intergenic 315279 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 248.5-36 chr8 130270554 130270840 + 1 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 25836 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 220.75-19 chr20 1239102 1239469 + 1 NA intron (NM_001136566, intron 6 of 13) intron (NM_001136566, intron 6 of 13) 13165 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 252.5-29 chr5 5212409 5212849 + 1 NA intron (NM_139056, intron 10 of 22) L1ME3A|LINE|L1 72299 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 114.5-61 chr20 2332038 2332291 + 1 NA exon (NM_003245, exon 10 of 13) exon (NM_003245, exon 10 of 13) 36163 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 145.5-25 chr13 74003251 74003529 + 1 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 130539 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 144.5-55 chr2 45207973 45208262 + 1 NA intron (NR_033831, intron 1 of 5) LTR16A|LTR|ERVL 46824 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 153.5-60 chr3 23523809 23524108 + 1 NA intron (NM_001370225, intron 4 of 5) intron (NM_001370225, intron 4 of 5) -281997 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 119.75-77 chr7 53321383 53321631 + 1 NA Intergenic Intergenic 285874 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 175.5-12 chr10 75730971 75731243 + 1 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 18652 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 161.5-89 chrX 88991237 88991665 + 1 NA Intergenic MER83|LTR|ERV1 244226 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 185.75-46 chr4 88587021 88587239 + 1 NA Intergenic Intergenic -5293 NM_001271602 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 136.5-95 chr5 165165367 165165684 + 1 NA Intergenic MIR|SINE|MIR 695246 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 125.5-61 chr2 20409292 20409585 + 1 NA Intergenic L1M2a|LINE|L1 -37636 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 159.5-68 chr5 25425851 25426113 + 1 NA Intergenic Intergenic 235029 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 249.75-3 chr1 207448363 207448631 + 1 NA Intergenic L1M5|LINE|L1 -5803 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 190.5-9 chr10 23333732 23334106 + 1 NA intron (NM_153714, intron 1 of 4) AluJo|SINE|Alu -10038 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 119.5-110 chr6 161870971 161871147 + 1 NA intron (NM_004562, intron 6 of 11) GA-rich|Low_complexity|Low_complexity 400082 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 118.5-41 chr16 51159621 51159739 + 1 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -8408 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 196.25-61 chr7 11474926 11475197 + 1 NA intron (NM_015204, intron 7 of 26) L2c|LINE|L2 357137 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 276.5-13 chr4 72360012 72360439 + 1 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 208996 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 253.5-7 chr10 107858180 107858491 + 1 NA Intergenic Intergenic 210958 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 146.5-56 chr22 41579849 41580040 + 1 NA intron (NM_002676, intron 5 of 7) MIRc|SINE|MIR 9896 NM_002676 5372 Hs.75835 NM_002676 ENSG00000100417 PMM1 PMM 1|PMMH-22|Sec53 phosphomannomutase 1 protein-coding 198.25-17 chr17 66852560 66852845 + 1 NA intron (NM_145811, intron 1 of 5) L1ME1|LINE|L1 17585 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 160.25-29 chr18 79144600 79144875 + 1 NA intron (NR_148360, intron 6 of 31) intron (NR_148360, intron 6 of 31) 75343 NM_198531 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 233.25-35 chr8 51594998 51595360 + 1 NA intron (NM_144651, intron 2 of 22) intron (NM_144651, intron 2 of 22) 214266 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 150.25-82 chr9 137836355 137836584 + 1 NA TTS (NM_024757) TTS (NM_024757) -1950 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 156.5-78 chr7 122294942 122295164 + 1 NA Intergenic L1MC5|LINE|L1 -8605 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 193.25-2 chr1 171889314 171889551 + 1 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 25240 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 143.75-3 chr1 43724061 43724223 + 1 NA intron (NR_125986, intron 1 of 3) intron (NR_125986, intron 1 of 3) 3201 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 115.75-72 chr5 5180176 5180413 + 1 NA intron (NM_139056, intron 3 of 22) intron (NM_139056, intron 3 of 22) 39964 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 195.25-29 chr22 26245636 26246113 + 1 NA intron (NM_001184776, intron 1 of 14) (ATT)n|Simple_repeat|Simple_repeat 76400 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 228.5-9 chr13 56234479 56234913 + 1 NA Intergenic Intergenic -906222 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 252.5-28 chr4 49092402 49092899 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 106008 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 132.25-43 chr2 49768059 49768265 + 1 NA Intergenic Intergenic 206041 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 129.5-48 chr2 144731420 144731633 + 1 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 63559 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 190.5-52 chr4 40989006 40989288 + 1 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -131955 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 125.5-133 chrX 13622374 13622541 + 1 NA intron (NM_015507, intron 9 of 11) intron (NM_015507, intron 9 of 11) -30684 NM_001297563 170082 Hs.222855 NM_152634 ENSG00000176896 TCEANC - transcription elongation factor A N-terminal and central domain containing protein-coding 207.5-19 chr16 55747631 55747889 + 1 NA intron (NR_033740, intron 12 of 13) (TGTC)n|Simple_repeat|Simple_repeat -12839 NR_003276 51716 Hs.721645 NM_016280 ENSG00000228695 CES1P1 CES1A2|CES1A3|CES4|CESR|PCE-3 carboxylesterase 1 pseudogene 1 pseudo 135.5-28 chr14 27108713 27108902 + 1 NA Intergenic Intergenic 200165 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 245.5-31 chr5 7347001 7347445 + 1 NA non-coding (NR_134277, exon 2 of 2) non-coding (NR_134277, exon 2 of 2) 754 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 244.5-13 chr18 12840682 12841053 + 1 NA promoter-TSS (NM_001308287) promoter-TSS (NM_001308287) 95 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 185.25-19 chr15 58361148 58361380 + 1 NA Intergenic Intergenic -70727 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 130.5 chr1 11832783 11832943 + 1 NA intron (NM_001286, intron 13 of 22) intron (NM_001286, intron 13 of 22) -7456 NR_037806 100379251 Hs.710015 NR_037806 NPPA-AS1 NPPA-AS|NPPAAS NPPA antisense RNA 1 ncRNA 271.5-22 chr5 10610587 10610900 + 1 NA intron (NM_001164440, intron 1 of 3) intron (NM_001164440, intron 1 of 3) 46673 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 168.5-44 chr2 103814138 103814470 + 1 NA Intergenic Intergenic 594028 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 156.5-82 chr8 50856883 50857124 + 1 NA Intergenic L1ME2|LINE|L1 692872 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 250.75-10 chr18 12418266 12418578 + 1 NA intron (NM_001142405, intron 1 of 6) L1ME4a|LINE|L1 -1767 NM_001142406 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 172.25-54 chr4 67838366 67838624 + 1 NA intron (NM_004262, intron 4 of 9) intron (NM_004262, intron 4 of 9) 45507 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 249.5-24 chr5 145088385 145088765 + 1 NA Intergenic L1PA16|LINE|L1 746767 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 171.5-43 chr2 105262737 105262992 + 1 NA intron (NM_001328646, intron 11 of 11) intron (NM_001328646, intron 11 of 11) 21121 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 170.25-55 chr6 72052086 72052262 + 1 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) -160719 NM_001350447 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 116.5-84 chr3 124792780 124793000 + 1 NA intron (NM_001354766, intron 9 of 13) intron (NM_001354766, intron 9 of 13) 60451 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 198.5-36 chr4 145351889 145352145 + 1 NA Intergenic Intergenic -11598 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 149.75-6 chr1 237489886 237490168 + 1 NA intron (NM_001035, intron 17 of 104) L1PA16|LINE|L1 18908 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 165.5-39 chr17 71609965 71610176 + 1 NA Intergenic Intergenic -407891 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 150.5-12 chr11 80772508 80772738 + 1 NA Intergenic L1MA8|LINE|L1 -9820 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 117.5-44 chr2 16340878 16341191 + 1 NA Intergenic HSMAR1|DNA|TcMar-Mariner 290607 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 171.75-34 chr20 43123829 43124042 + 1 NA intron (NM_133170, intron 1 of 31) MIRc|SINE|MIR 65971 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 287.25-17 chr6 130249996 130250347 + 1 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) -27220 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 210.75-13 chr15 67660687 67660934 + 1 NA intron (NM_001206804, intron 12 of 21) MIRb|SINE|MIR 111716 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 260.25-4 chr13 69067321 69067735 + 1 NA Intergenic Intergenic -154818 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 130.5-112 chrUn_KI270751v1 150579 150736 + 1 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 157.5-71 chr3 180510244 180510486 + 1 NA Intergenic Intergenic -91798 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 178.5-15 chr14 73076106 73076316 + 1 NA intron (NM_021239, intron 2 of 18) intron (NM_021239, intron 2 of 18) 17677 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 157.5-83 chr5 57012890 57013116 + 1 NA Intergenic Intergenic -60873 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 139.75-40 chr2 71349367 71349586 + 1 NA exon (NM_014497, exon 2 of 28) exon (NM_014497, exon 2 of 28) 17694 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 253.5-9 chr12 4172116 4172551 + 1 NA Intergenic Intergenic -101429 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 134.25-56 chr3 32646940 32647232 + 1 NA Intergenic Intergenic -38102 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 118.75-12 chr10 106765757 106765970 + 1 NA intron (NM_001206569, intron 4 of 25) intron (NM_001206569, intron 4 of 25) 398843 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 126.75-42 chr2 84091911 84092128 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -198663 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 135.5-87 chr5 137176530 137176812 + 1 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 48474 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 136.5-53 chr2 58351862 58351998 + 1 NA Intergenic Intergenic 76053 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 212.5-13 chr14 54540699 54541102 + 1 NA Intergenic Intergenic -26712 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 154.75-59 chr6 170102709 170102939 + 1 NA Intergenic Intergenic -57818 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 232.5-51 chr8 139783437 139783777 + 1 NA intron (NM_001160372, intron 21 of 22) L1ME1|LINE|L1 -80484 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 291.5-3 chr11 60027867 60028311 + 1 NA intron (NM_001368161, intron 2 of 3).2 intron (NM_001368161, intron 2 of 3).2 4286 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 257.5-23 chr5 136680273 136680586 + 1 NA Intergenic L1MB2|LINE|L1 -314953 NM_020389 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 246.75-19 chr3 46924485 46924962 + 1 NA intron (NM_144716, intron 4 of 7) AluSz|SINE|Alu 42474 NM_001184744 5745 Hs.1019 NM_000316 ENSG00000160801 PTH1R EKNS|PFE|PTHR|PTHR1 parathyroid hormone 1 receptor protein-coding 136.5-92 chr5 73451882 73452088 + 1 NA Intergenic Intergenic -3208 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 149.5-99 chr7 95420709 95420867 + 1 NA intron (NM_000305, intron 2 of 8) intron (NM_000305, intron 2 of 8) 14240 NM_000305 5445 Hs.514420 NM_000305 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 129.5-86 chr7 16424487 16424699 + 1 NA Intergenic MamRep4096|DNA|hAT-Tip100 -3055 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 188.25-43 chr3 192730720 192731133 + 1 NA Intergenic L1MA5A|LINE|L1 -3385 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 122.5-12 chr10 56516892 56517044 + 1 NA Intergenic Intergenic -155695 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 154.5-48 chr20 63195424 63195696 + 1 NA 3' UTR (NM_017798, exon 5 of 5) 3' UTR (NM_017798, exon 5 of 5) 17060 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 119.75-63 chr4 86874629 86874976 + 1 NA Intergenic AluSz|SINE|Alu 17620 NM_001369888 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 175.5-52 chr3 23768843 23769156 + 1 NA Intergenic AluY|SINE|Alu -36956 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 176.5-17 chr11 114189658 114189988 + 1 NA intron (NM_006006, intron 4 of 6) L1MB7|LINE|L1 -105990 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 172.25-43 chr3 20542174 20542390 + 1 NA Intergenic Intergenic 199814 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 153.5-33 chr15 99553023 99553361 + 1 NA Intergenic Intergenic -12225 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 168.5-33 chr15 96471428 96471726 + 1 NA Intergenic L2a|LINE|L2 137812 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 357.5-3 chr2 34136787 34137477 + 1 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 69906 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 223.25-15 chr17 53547537 53548000 + 1 NA Intergenic Intergenic -275159 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 160.75-69 chr8 126017731 126017966 + 1 NA Intergenic LTR52|LTR|ERVL -66651 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 120.5-5 chr1 194634023 194634227 + 1 NA Intergenic L1MC3|LINE|L1 1329380 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 212.25-12 chr12 23607151 23607432 + 1 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -22705 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 230.5-47 chr6 113904484 113904767 + 1 NA non-coding (NR_027060, exon 1 of 4) non-coding (NR_027060, exon 1 of 4) 238 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 149.5-75 chr4 32631266 32631506 + 1 NA Intergenic L1M3c|LINE|L1 280348 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 256.75-4 chr14 62224563 62225012 + 1 NA Intergenic Intergenic -84814 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 175.25-42 chr5 64580861 64581126 + 1 NA intron (NM_001271891, intron 1 of 3) AluJb|SINE|Alu 5343 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 227.5-24 chr17 64424333 64424665 + 1 NA Intergenic MER41B|LTR|ERV1 -24616 NM_001085423 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 149.25-36 chr2 193915509 193915690 + 1 NA Intergenic L1MB8|LINE|L1 -428670 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 145.5-55 chr2 197625147 197625358 + 1 NA intron (NM_144629, intron 5 of 8) Charlie16a|DNA|hAT-Charlie 50335 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 218.5-7 chr10 80059165 80059428 + 1 NA intron (NR_027431, intron 2 of 4) AluSx|SINE|Alu -19350 NM_001270373 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 232.75-20 chr6 90951422 90951917 + 1 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -364597 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 145.5-86 chr6 165014630 165014814 + 1 NA Intergenic Intergenic -192659 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 238.5-30 chr5 15676491 15676973 + 1 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -61730 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 124.75-13 chr10 43085718 43085905 + 1 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) 8742 NM_020975 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 137.5-14 chr10 113190866 113191137 + 1 NA Intergenic L2b|LINE|L2 61730 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 178.75-55 chr7 53932233 53932588 + 1 NA Intergenic Intergenic -120479 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 149.5-6 chr1 63543746 63544023 + 1 NA intron (NM_032437, intron 6 of 13) intron (NM_032437, intron 6 of 13) -5096 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 195.25-27 chr2 189480953 189481195 + 1 NA Intergenic Intergenic 39600 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 150.5-25 chr14 23660020 23660250 + 1 NA Intergenic Intergenic 23771 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 170.75-55 chr5 23537453 23537640 + 1 NA Intergenic Intergenic 29891 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 251.25-31 chr9 95513164 95513483 + 1 NA intron (NM_001083603, intron 1 of 23) intron (NM_001083603, intron 1 of 23) 3642 NM_001083603 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 269.25-15 chr3 138429051 138429404 + 1 NA Intergenic L1MB3|LINE|L1 -5346 NR_136409 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 283.25-8 chr14 70134715 70135064 + 1 NA intron (NM_033262, intron 2 of 7) MLT1C|LTR|ERVL-MaLR -52219 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 128.75-66 chr4 33657652 33657867 + 1 NA Intergenic L1MEd|LINE|L1 382134 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 141.25-61 chr5 143480800 143480967 + 1 NA Intergenic L2a|LINE|L2 -45371 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 213.25-27 chr21 28745779 28746303 + 1 NA Intergenic Intergenic 139326 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 161.75-66 chr9 20966558 20966869 + 1 NA intron (NM_017794, intron 37 of 45) L1MB5|LINE|L1 64927 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 149.5-32 chr14 55939518 55939715 + 1 NA Intergenic Intergenic -142942 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 139.5-62 chr3 129058743 129058926 + 1 NA Intergenic MER66C|LTR|ERV1 -1933 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 216.5-27 chr3 192079213 192079555 + 1 NA Intergenic Intergenic -159246 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 120.5-105 chr8 99150263 99150432 + 1 NA intron (NM_017890, intron 14 of 61) L1MC1|LINE|L1 137081 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 115.75-41 chr19 58152933 58153230 + 1 NA Intergenic Intergenic -2292 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 171.5-60 chr4 124242795 124243042 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR 315516 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 114.5-26 chr16 11306564 11306689 + 1 NA promoter-TSS (NR_031678) promoter-TSS (NR_031678) -99 NR_031678 100313773 NR_031678 ENSG00000221801 MIR548H2 MIR548H-2|MIRN548H2 microRNA 548h-2 ncRNA 196.5-13 chr10 33919726 33920081 + 1 NA Intergenic LTR40c|LTR|ERVL -147223 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 258.5-5 chr12 122943890 122944286 + 1 NA intron (NM_019624, intron 6 of 10) AluSx1|SINE|Alu 22375 NM_001243014 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 131.5-97 chr8 119014810 119015012 + 1 NA intron (NM_001324095, intron 1 of 7) L1MC1|LINE|L1 -52336 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 198.25-10 chr14 50843870 50844302 + 1 NA Intergenic L2c|LINE|L2 -12965 NM_182946 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 176.5-49 chr2 143485568 143485855 + 1 NA intron (NM_018460, intron 8 of 13) MER20|DNA|hAT-Charlie 356292 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 191.5-72 chrX 93521745 93521972 + 1 NA Intergenic Intergenic 151720 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 131.5-17 chr11 108576135 108576273 + 1 NA intron (NM_015065, intron 1 of 5) L1MB5|LINE|L1 17564 NM_015065 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 115.75-96 chr8 106105296 106105464 + 1 NA Intergenic AluSq|SINE|Alu -44877 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 191.5-26 chr17 59068179 59068555 + 1 NA intron (NR_148346, intron 9 of 23) MER5A|DNA|hAT-Charlie 38513 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 251.25-7 chr12 9831935 9832233 + 1 NA intron (NR_120305, intron 1 of 3) intron (NR_120305, intron 1 of 3) 4603 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 138.75-71 chr7 115920440 115920608 + 1 NA Intergenic Intergenic 47789 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 250.5-28 chr5 155906786 155907195 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -419767 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 205.5-65 chr9 114881302 114881545 + 1 NA Intergenic Intergenic 49172 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 132.5-40 chr16 77546359 77546557 + 1 NA Intergenic L3|LINE|CR1 -111424 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 199.5-31 chr20 46295502 46295769 + 1 NA intron (NM_021248, intron 1 of 11) MIR|SINE|MIR 12863 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 158.5-42 chr16 77616086 77616347 + 1 NA Intergenic Intergenic -106276 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 143.75-64 chr4 75692714 75692988 + 1 NA Intergenic MER102b|DNA|hAT-Charlie -19368 NM_203505 9908 Hs.303676 NM_012297 ENSG00000138757 G3BP2 - G3BP stress granule assembly factor 2 protein-coding 151.25-51 chr6 71299727 71299940 + 1 NA intron (NM_001324266, intron 6 of 6) intron (NM_001324266, intron 6 of 6) 11022 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 168.5-10 chr10 55716702 55716950 + 1 NA Intergenic Intergenic -88884 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 114.5-42 chr18 9080383 9080535 + 1 NA Intergenic Intergenic -22240 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 224.75-2 chr1 79925789 79926196 + 1 NA Intergenic AluSq2|SINE|Alu -609763 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 221.5-7 chr10 61068454 61068812 + 1 NA Intergenic Intergenic 52358 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 265.75-3 chr10 89870949 89871514 + 1 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) -16903 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 126.5-105 chr7 7150373 7150547 + 1 NA Intergenic Intergenic -32155 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 116.75-61 chr5 93678106 93678352 + 1 NA intron (NM_032042, intron 10 of 10) MamRTE1|LINE|RTE-BovB -57441 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 208.25-36 chr6 38307046 38307301 + 1 NA intron (NM_052893, intron 8 of 11) intron (NM_052893, intron 8 of 11) -174423 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 243.5-3 chr11 115532114 115532633 + 1 NA Intergenic Intergenic -27958 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 196.5-19 chr11 57760049 57760385 + 1 NA intron (NR_037646, intron 2 of 20) intron (NR_037646, intron 2 of 20) -1585 NM_001085464 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 118.75-37 chr16 48581190 48581382 + 1 NA intron (NM_153029, intron 1 of 6) L1MA8|LINE|L1 28894 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 123.75-63 chr21 45100608 45100757 + 1 NA intron (NM_001346688, intron 1 of 11) intron (NM_001346688, intron 1 of 11) 25631 NM_001346688 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 144.75-41 chr2 58826541 58826756 + 1 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 305895 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 272.75-15 chr5 138554622 138554929 + 1 NA 3' UTR (NM_004134, exon 17 of 17) 3' UTR (NM_004134, exon 17 of 17) 4266 NR_145752 109617013 NR_145752 ENSG00000222937 SNORD63B - small nucleolar RNA, C/D box 63B snoRNA 192.25-8 chr1 217715248 217715491 + 1 NA intron (NM_138796, intron 5 of 10) intron (NM_138796, intron 5 of 10) 69751 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 244.5-19 chr20 62376719 62377060 + 1 NA Intergenic Intergenic -9577 NM_005560 3911 Hs.473256 NM_005560 ENSG00000130702 LAMA5 - laminin subunit alpha 5 protein-coding 134.75-54 chr5 41203255 41203473 + 1 NA intron (NM_001115131, intron 1 of 17) Tigger19b|DNA|TcMar-Tigger 10168 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 151.25-7 chr10 65978915 65979093 + 1 NA intron (NM_001127384, intron 16 of 17) intron (NM_001127384, intron 16 of 17) 407579 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 180.25-40 chr3 73909051 73909389 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 99976 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 131.5-27 chr14 61314946 61315083 + 1 NA Intergenic HAL1b|LINE|L1 -6429 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 294.5-10 chr19 46589243 46589591 + 1 NA intron (NM_001370550, intron 1 of 2) AluY|SINE|Alu 11499 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 135.5-15 chr11 47511481 47511878 + 1 NA intron (NM_001330272, intron 1 of 15) MIR|SINE|MIR 12309 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 133.5-5 chr1 63562764 63562964 + 1 NA intron (NM_032437, intron 11 of 13) intron (NM_032437, intron 11 of 13) 13884 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 189.25-12 chr14 57473354 57473645 + 1 NA intron (NM_018168, intron 5 of 5) L2b|LINE|L2 20358 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 181.25-49 chr5 92512036 92512373 + 1 NA Intergenic L1MB8|LINE|L1 1059139 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 155.25-76 chr9 125311140 125311459 + 1 NA TTS (NM_001354293) TTS (NM_001354293) 49473 NM_001354294 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 204.25 chr1 113377664 113377942 + 1 NA Intergenic L1ME4b|LINE|L1 -12712 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 118.75-72 chr3 102711686 102711827 + 1 NA Intergenic L1MEh|LINE|L1 276741 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 128.75-41 chr2 107693824 107694048 + 1 NA Intergenic Intergenic -60176 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 298.5-2 chr1 61166603 61167054 + 1 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 84267 NM_005595 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 155.5-32 chr14 49728474 49728790 + 1 NA intron (NM_172193, intron 6 of 12) intron (NM_172193, intron 6 of 12) 35512 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 170.75-66 chr7 21751550 21751859 + 1 NA intron (NM_001277115, intron 54 of 81) intron (NM_001277115, intron 54 of 81) 194195 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 168.5-36 chr17 75170693 75170975 + 1 NA intron (NM_001005849, intron 2 of 2) AluSx3|SINE|Alu 12125 NM_006937 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin like modifier 2 protein-coding 204.75-33 chr3 133317442 133317812 + 1 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -60506 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 244.5-38 chr8 26145513 26145969 + 1 NA Intergenic Intergenic -100328 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 193.5-75 chr8 64447408 64447762 + 1 NA Intergenic L2a|LINE|L2 68436 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 197.75-10 chr12 91953508 91953819 + 1 NA Intergenic Intergenic 188050 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 118.75-78 chr4 60331756 60331978 + 1 NA Intergenic Intergenic -590752 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 150.75-36 chr2 150638290 150638523 + 1 NA Intergenic Intergenic 9509 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 121.75-14 chr11 112657867 112658095 + 1 NA Intergenic Intergenic -102179 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 188.25-55 chr7 29178429 29178660 + 1 NA intron (NM_001371256, intron 3 of 16) L2b|LINE|L2 11513 NM_001371267 156.25-21 chr14 85748374 85748621 + 1 NA Intergenic L1MB1|LINE|L1 -186181 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 122.5-38 chr17 69783245 69783439 + 1 NA intron (NR_109972, intron 3 of 4) L1MA6|LINE|L1 -178365 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 209.5-4 chr12 91143344 91143778 + 1 NA 3' UTR (NM_133507, exon 2 of 2) 3' UTR (NM_133507, exon 2 of 2) -32067 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 183.5-68 chr5 89582927 89583180 + 1 NA Intergenic Intergenic 433667 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 171.25-64 chrX 68580238 68580446 + 1 NA Intergenic L2a|LINE|L2 -67327 NM_014725 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 138.5-54 chr2 13817919 13818259 + 1 NA Intergenic MIRb|SINE|MIR 582869 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 231.5-18 chr18 71528339 71528621 + 1 NA intron (NR_038325, intron 4 of 6) intron (NR_038325, intron 4 of 6) 50476 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 185.75-7 chr10 81411189 81411443 + 1 NA Intergenic L1M|LINE|L1 -463878 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 298.5-22 chr8 139040176 139040706 + 1 NA Intergenic Intergenic -126400 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 260.5-10 chr14 63903361 63903805 + 1 NA intron (NM_015180, intron 1 of 114) FLAM_A|SINE|Alu 50579 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 126.5-27 chr12 89384805 89384959 + 1 NA Intergenic L1MC3|LINE|L1 -32381 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 137.5-56 chr2 97900557 97900808 + 1 NA intron (NM_015348, intron 3 of 40) L1MA8|LINE|L1 95266 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 136.75-55 chr20 24406385 24406712 + 1 NA Intergenic Intergenic -62651 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 140.75-41 chr3 57051570 57051798 + 1 NA intron (NM_001128615, intron 1 of 12) AluSx1|SINE|Alu -8980 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 168.25 chr1 72246958 72247140 + 1 NA intron (NM_173808, intron 1 of 6) MSTA-int|LTR|ERVL-MaLR 35490 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 198.25-33 chr4 92650704 92651008 + 1 NA intron (NM_001286838, intron 2 of 14) ERVL-B4-int|LTR|ERVL 346457 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 135.5-75 chr3 78941141 78941487 + 1 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 78145 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 131.5 chr1 67364476 67364650 + 1 NA intron (NM_001319233, intron 10 of 15) L1MCa|LINE|L1 57199 NR_047583 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 169.25-34 chr21 30181191 30181372 + 1 NA Intergenic Intergenic -14476 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 149.5-60 chr2 196167936 196168178 + 1 NA intron (NM_004226, intron 1 of 7) intron (NM_004226, intron 1 of 7) 3521 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 248.5-4 chr10 76355427 76355734 + 1 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -532464 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 190.75-21 chr14 55045982 55046274 + 1 NA 3' UTR (NM_080867, exon 2 of 2) 3' UTR (NM_080867, exon 2 of 2) -5519 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 165.5-11 chr11 13017388 13017801 + 1 NA Intergenic Intergenic 8278 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 186.75-53 chr6 26222097 26222349 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie -2932 NM_003532 8353 Hs.443021 NM_003532 ENSG00000274750 HIST1H3E H3.1|H3/d|H3FD histone cluster 1 H3 family member e protein-coding 203.75-18 chr18 13007189 13007504 + 1 NA intron (NM_032142, intron 3 of 44) intron (NM_032142, intron 3 of 44) 15984 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 178.5-82 chr8 65531399 65531652 + 1 NA non-coding (NR_033893, exon 3 of 5) non-coding (NR_033893, exon 3 of 5) 31141 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 221.5-36 chr5 54712644 54712870 + 1 NA intron (NR_104658, intron 1 of 2) THE1B-int|LTR|ERVL-MaLR -9433 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 225.75-29 chr8 128042428 128042712 + 1 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -6582 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 193.5-32 chr2 223097231 223097547 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 45459 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 155.25-79 chrX 98590953 98591181 + 1 NA Intergenic Intergenic -1026532 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 328.5-17 chr6 139570118 139570533 + 1 NA Intergenic L3|LINE|CR1 -95729 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 255.5-16 chr2 148519631 148520311 + 1 NA Intergenic AluSz|SINE|Alu -124780 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 114.5-78 chr4 82206694 82206808 + 1 NA Intergenic L1MA3|LINE|L1 167240 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 222.25-33 chr8 133400176 133400442 + 1 NA Intergenic Intergenic -103005 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 232.5-54 chr9 85516611 85516872 + 1 NA Intergenic Intergenic 225288 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 134.5-22 chr12 126777762 126778119 + 1 NA Intergenic Intergenic -5678 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 205.25-39 chr6 64729595 64729996 + 1 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -571623 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 127.75-52 chr3 66905536 66905818 + 1 NA Intergenic Intergenic -92630 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 238.25-16 chr20 41268194 41268561 + 1 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 31743 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 156.25-34 chr2 49001461 49001644 + 1 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -58051 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 125.5-87 chr4 13953029 13953162 + 1 NA Intergenic MER20|DNA|hAT-Charlie -158873 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 242.25-34 chr9 89435621 89435998 + 1 NA intron (NM_001371200, intron 2 of 20) intron (NM_001371200, intron 2 of 20) 44081 NR_163885 300.5-20 chr8 41388300 41388696 + 1 NA Intergenic L1MC3|LINE|L1 -38157 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 213.5-50 chr8 123264265 123264562 + 1 NA intron (NM_001017926, intron 2 of 3) intron (NM_001017926, intron 2 of 3) 9873 NM_007222 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 172.5-53 chr4 112543033 112543294 + 1 NA intron (NM_018392, intron 24 of 27) L1ME3Cz|LINE|L1 -26983 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 157.75-48 chr20 39774384 39774680 + 1 NA Intergenic Intergenic -229929 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 142.75-86 chr8 88531912 88532098 + 1 NA Intergenic Intergenic -204522 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 213.5-8 chr11 84006201 84006565 + 1 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 266897 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 131.75-65 chr5 152531872 152532042 + 1 NA Intergenic Intergenic -126678 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 139.5-40 chr2 52585709 52585874 + 1 NA Intergenic Intergenic 116824 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 192.75-16 chr2 115788675 115789135 + 1 NA intron (NM_001321912, intron 18 of 25) AluY|SINE|Alu 445090 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 155.5-85 chr6 85506518 85506742 + 1 NA intron (NM_001350538, intron 28 of 28) intron (NM_001350538, intron 28 of 28) 56547 NM_002526 4907 Hs.153952 NM_002526 ENSG00000135318 NT5E CALJA|CD73|E5NT|NT|NT5|NTE|eN|eNT 5'-nucleotidase ecto protein-coding 166.25-44 chr4 39866499 39866842 + 1 NA intron (NM_001100399, intron 23 of 32) intron (NM_001100399, intron 23 of 32) 111241 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 253.75-5 chr12 19743480 19743812 + 1 NA Intergenic Intergenic -271039 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 150.25-77 chr8 125717107 125717442 + 1 NA Intergenic Intergenic 233923 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 144.75-66 chr4 137731586 137731813 + 1 NA Intergenic L1MA4|LINE|L1 185968 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 230.5-61 chr9 70430204 70430780 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -15835 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 171.75-22 chr17 52819808 52820221 + 1 NA Intergenic L1MD3|LINE|L1 -42107 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 316.75-7 chr6 93786725 93787101 + 1 NA Intergenic Intergenic 68610 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 189.5-70 chr8 93629655 93629997 + 1 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 70607 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 248.5-28 chr5 123592849 123593122 + 1 NA intron (NM_001364145, intron 8 of 10) intron (NM_001364145, intron 8 of 10) 47568 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 115.25-41 chr17 63578600 63578811 + 1 NA intron (NR_073585, intron 2 of 7) intron (NR_073585, intron 2 of 7) -22190 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 166.5-28 chr13 112793942 112794151 + 1 NA intron (NM_032189, intron 2 of 28) intron (NM_032189, intron 2 of 28) -39315 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 148.75-73 chr8 130107765 130107981 + 1 NA intron (NM_018482, intron 24 of 29) intron (NM_018482, intron 24 of 29) -23105 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 144.75-61 chr4 41285192 41285511 + 1 NA Intergenic Intergenic 28423 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 156.25-49 chr3 20200746 20200975 + 1 NA Intergenic Intergenic -14627 NR_131180 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 171.5-29 chr15 69526354 69526649 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -35219 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 130.75-45 chr2 217940335 217940618 + 1 NA intron (NM_022648, intron 1 of 32) intron (NM_022648, intron 1 of 32) 3594 NM_022648 7145 Hs.471381 NM_022648 ENSG00000079308 TNS1 MST091|MST122|MST127|MSTP091|MSTP122|MSTP127|MXRA6|PPP1R155|TNS tensin 1 protein-coding 193.5-78 chr8 136633534 136633918 + 1 NA intron (NR_147196, intron 2 of 5) ERV3-16A3_I-int|LTR|ERVL 102928 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 114.5-51 chr2 66568240 66568408 + 1 NA intron (NM_002398, intron 10 of 12) intron (NM_002398, intron 10 of 12) -5706 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 191.75-44 chr8 124113410 124113764 + 1 NA intron (NM_001039112, intron 39 of 40) L1MC4|LINE|L1 57935 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 124.75-53 chr20 37147587 37147801 + 1 NA intron (NM_152503, intron 10 of 24) intron (NM_152503, intron 10 of 24) -31352 NM_001324305 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 156.25-58 chr4 172345891 172346094 + 1 NA intron (NM_001034845, intron 4 of 12) LTR16C|LTR|ERVL 342925 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 138.75-27 chr16 9269280 9269444 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -86226 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 150.75-52 chr3 145396094 145396552 + 1 NA Intergenic Intergenic 672862 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 201.75-11 chr14 99785353 99785682 + 1 NA Intergenic L3|LINE|CR1 -7896 NM_001008707 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 151.5-79 chr7 28146519 28146707 + 1 NA intron (NM_175061, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger -33844 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 138.5-113 chrX 71360790 71360961 + 1 NA Intergenic L2a|LINE|L2 -5364 NM_138923 6872 Hs.158560 NM_004606 ENSG00000147133 TAF1 BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP TATA-box binding protein associated factor 1 protein-coding 231.5-53 chrX 50089331 50089602 + 1 NA intron (NM_001282163, intron 9 of 11) L1ME4a|LINE|L1 19965 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 169.5-16 chr11 112510713 112511001 + 1 NA intron (NR_120559, intron 2 of 2) intron (NR_120559, intron 2 of 2) 26512 NR_120560 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 171.75-12 chr11 93667049 93667491 + 1 NA intron (NM_033395, intron 2 of 29) intron (NM_033395, intron 2 of 29) 5588 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 170.25-23 chr14 81437192 81437538 + 1 NA promoter-TSS (NM_001366849) promoter-TSS (NM_001366849) -900 NM_001366850 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 185.75-15 chr11 63783101 63783431 + 1 NA Intergenic AluSx3|SINE|Alu -14491 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 160.5-11 chr11 122045445 122045705 + 1 NA intron (NR_137178, intron 3 of 4) intron (NR_137178, intron 3 of 4) 54269 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 173.75-25 chr20 57259487 57259719 + 1 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 7038 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 320.25-2 chr10 121050001 121050560 + 1 NA Intergenic Intergenic 198918 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 125.5-94 chr4 67554850 67555037 + 1 NA Intergenic Intergenic -3784 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 161.25-44 chr2 109616586 109616776 + 1 NA 3' UTR (NM_023016, exon 1 of 1) 3' UTR (NM_023016, exon 1 of 1) 2317 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 167.5-18 chr12 111993549 111993768 + 1 NA intron (NM_138341, intron 2 of 9) intron (NM_138341, intron 2 of 9) 19507 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 113.5-114 chr7 152485267 152485437 + 1 NA Intergenic Intergenic 21228 NR_027387 100128822 Hs.647112 NR_027387 ENSG00000261455 LINC01003 - long intergenic non-protein coding RNA 1003 ncRNA 187.5-25 chr15 26947753 26948070 + 1 NA intron (NM_001165037, intron 10 of 10) intron (NM_001165037, intron 10 of 10) -23270 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 232.25-27 chr7 82721886 82722151 + 1 NA Intergenic Intergenic -278062 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 122.25-90 chr8 74921521 74921779 + 1 NA Intergenic L2a|LINE|L2 -62855 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 135.25-101 chrX 50889340 50889477 + 1 NA Intergenic L1MA4|LINE|L1 -21327 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 189.5-58 chr6 144866616 144866846 + 1 NA Intergenic Intergenic 461076 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 228.25-33 chr7 64678499 64678746 + 1 NA promoter-TSS (NR_106898) promoter-TSS (NR_106898) -442 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 166.5 chr1 18991618 18991849 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -35057 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 171.75-3 chr1 115195231 115195515 + 1 NA Intergenic Intergenic -87661 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 131.25-61 chr3 179493119 179493413 + 1 NA Intergenic L1M3c|LINE|L1 -41796 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 141.5-34 chr14 84497911 84498106 + 1 NA Intergenic MIRb|SINE|MIR -773924 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 219.5-35 chr4 47452073 47452304 + 1 NA intron (NM_001329668, intron 4 of 4) intron (NM_001329668, intron 4 of 4) 11514 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 169.25-21 chr15 76970317 76970609 + 1 NA Intergenic L1MC5|LINE|L1 -24217 NM_001321137 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 193.5-70 chr7 7904047 7904491 + 1 NA Intergenic L1MB7|LINE|L1 64483 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 115.5-77 chr5 160059281 160059542 + 1 NA intron (NM_003314, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 50272 NM_003314 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 176.75-49 chr7 43024648 43024960 + 1 NA Intergenic L1M4|LINE|L1 -87843 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 128.5-59 chr3 72642670 72642837 + 1 NA Intergenic Intergenic 21496 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 194.5-75 chr8 107075884 107076235 + 1 NA Intergenic L2a|LINE|L2 260456 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 114.75-8 chr10 20607006 20607182 + 1 NA Intergenic Intergenic 55124 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 134.75-59 chr5 120338756 120339006 + 1 NA Intergenic Intergenic -125397 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 206.5-40 chr4 186086698 186087079 + 1 NA Intergenic MER51B|LTR|ERV1 17733 NM_003265 7098 Hs.657724 NM_003265 ENSG00000164342 TLR3 CD283|IIAE2 toll like receptor 3 protein-coding 122.5-15 chr11 63685956 63686109 + 1 NA intron (NR_049750, intron 1 of 5) intron (NR_049750, intron 1 of 5) 4532 NM_001265591 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 116.75-72 chr6 162609254 162609399 + 1 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -117806 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 160.25-22 chr15 23777129 23777491 + 1 NA Intergenic L1PA16|LINE|L1 -90005 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 152.5-107 chr9 76541857 76542065 + 1 NA Intergenic L2c|LINE|L2 41328 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 174.25-41 chr3 154693318 154693651 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -263294 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 250.5-9 chr11 93658988 93659344 + 1 NA Intergenic MLT1H1|LTR|ERVL-MaLR -2516 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 115.75-80 chr5 101723738 101723998 + 1 NA Intergenic LTR52|LTR|ERVL 572416 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 269.5-4 chr1 244033062 244033567 + 1 NA intron (NR_033883, intron 8 of 11) L1MA7|LINE|L1 -15625 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 118.25-5 chr1 246145942 246146177 + 1 NA intron (NM_022743, intron 5 of 11) L2b|LINE|L2 271353 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 287.5-6 chr12 28971732 28972255 + 1 NA Intergenic Intergenic -177285 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 211.25-5 chr1 187513723 187514039 + 1 NA Intergenic MamGypsy2-I|LTR|Gypsy 70253 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 149.25-74 chrX 46229653 46229950 + 1 NA Intergenic Intergenic 97873 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 115.75-8 chr1 188880450 188880600 + 1 NA Intergenic Intergenic 1436897 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 191.25-33 chr2 99840797 99841009 + 1 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 264680 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 208.75-11 chr14 25199101 25199475 + 1 NA Intergenic Intergenic -148991 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 164.5-97 chr8 126717580 126717912 + 1 NA Intergenic Intergenic -159268 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 225.5-27 chr20 22360379 22360904 + 1 NA Intergenic L1MB3|LINE|L1 60002 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 182.5-54 chr5 15998426 15998608 + 1 NA Intergenic Intergenic 63335 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 150.75-33 chr2 96845334 96845630 + 1 NA Intergenic Intergenic -1461 NM_144994 200539 Hs.643430 NM_144994 ENSG00000163126 ANKRD23 DARP|MARP3 ankyrin repeat domain 23 protein-coding 124.5-30 chr13 101643965 101644158 + 1 NA intron (NM_001271754, intron 6 of 10) MER102b|DNA|hAT-Charlie 154109 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 215.25 chr1 63128636 63128906 + 1 NA Intergenic Intergenic -116300 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 257.25-16 chr3 10965990 10966526 + 1 NA Intergenic Intergenic -26476 NM_001348252 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 156.5-59 chr5 22788114 22788367 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 65104 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 132.5-83 chr4 98606137 98606396 + 1 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 52345 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 158.5-32 chr14 28283100 28283364 + 1 NA Intergenic L1MC1|LINE|L1 482087 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 180.5-53 chr22 27597601 27597843 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 204034 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 125.5-31 chr12 27570224 27570470 + 1 NA intron (NM_003622, intron 1 of 29) MIRb|SINE|MIR 46141 NM_003622 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 153.25-55 chr8 116798868 116799085 + 1 NA Intergenic L1MEc|LINE|L1 32452 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 216.25-8 chr11 124504825 124505271 + 1 NA Intergenic L1PA13|LINE|L1 38606 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 127.5-83 chr3 85553432 85553818 + 1 NA intron (NM_001256503, intron 2 of 9) MER5A|DNA|hAT-Charlie 48566 NM_001256503 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 154.5 chr1 47902329 47902696 + 1 NA intron (NM_001194986, intron 2 of 6) AluJr|SINE|Alu 94873 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 136.75-80 chr5 63480419 63480576 + 1 NA Intergenic L1M4|LINE|L1 481795 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 268.25-20 chr8 31688174 31688785 + 1 NA intron (NM_013962, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 48727 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 228.75-26 chr20 62587500 62587745 + 1 NA Intergenic MER70B|LTR|ERVL 22710 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 124.75-64 chr4 61167686 61167878 + 1 NA Intergenic Intergenic 24126 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 136.5-86 chr4 158172487 158172647 + 1 NA promoter-TSS (NM_016613) promoter-TSS (NM_016613) -194 NM_016613 51313 Hs.567498 NM_016613 ENSG00000164125 GASK1B AD021|AD036|C4orf18|ENED|FAM198B golgi associated kinase 1B protein-coding 137.25-7 chr1 217033308 217033652 + 1 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 43512 NM_001243509 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 119.75-53 chr22 33612435 33612646 + 1 NA intron (NM_133642, intron 4 of 14) MER8|DNA|TcMar-Tigger 92380 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 119.75-11 chr10 55192358 55192631 + 1 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -391203 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 129.5-69 chr4 90648581 90648727 + 1 NA intron (NM_207491, intron 6 of 7) MLT1B|LTR|ERVL-MaLR 413623 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 214.5-11 chr12 80775816 80776085 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 12796 NR_120468 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 182.5-11 chr11 43136803 43137151 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR 132392 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 152.25-37 chr21 28512284 28512475 + 1 NA Intergenic Intergenic -26939 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 240.5-3 chr1 107382358 107382609 + 1 NA intron (NM_001113226, intron 2 of 6) intron (NM_001113226, intron 2 of 6) 234414 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 187.25-38 chr3 74441527 74441857 + 1 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 79448 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 262.25-11 chr18 44177669 44177978 + 1 NA Intergenic Intergenic 353874 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 184.75-46 chr5 8911293 8911496 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie 71662 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 161.75-62 chr8 89594949 89595180 + 1 NA Intergenic Intergenic 162647 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 294.5-17 chr7 9661640 9662105 + 1 NA Intergenic Intergenic 27602 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 203.25-42 chr5 94654313 94654621 + 1 NA intron (NM_032290, intron 8 of 20) intron (NM_032290, intron 8 of 20) 35798 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 273.75-14 chr6 12693997 12694495 + 1 NA Intergenic Intergenic -22521 NM_001322308 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 122.5-40 chr18 8378213 8378412 + 1 NA exon (NM_001105244, exon 27 of 33) exon (NM_001105244, exon 27 of 33) -11278 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 245.5-13 chr2 148166873 148167219 + 1 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -145442 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 217.75-8 chr12 13701420 13701697 + 1 NA intron (NM_000834, intron 3 of 12) L2c|LINE|L2 278798 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 156.25-6 chr10 32230086 32230255 + 1 NA Intergenic MamGypLTR1c|LTR|Gypsy 116988 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 201.75-22 chr2 202605133 202605401 + 1 NA Intergenic Intergenic -29702 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 161.75-15 chr14 54752035 54752211 + 1 NA intron (NM_015589, intron 5 of 11) intron (NM_015589, intron 5 of 11) -2710 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 158.5-10 chr1 215310588 215310957 + 1 NA Intergenic L1ME1|LINE|L1 228035 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 163.5-17 chr11 90212896 90213150 + 1 NA intron (NM_012124, intron 4 of 10) intron (NM_012124, intron 4 of 10) 10026 NM_012124 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 135.25-87 chr6 158069669 158069892 + 1 NA intron (NM_003898, intron 14 of 26) intron (NM_003898, intron 14 of 26) 52687 NM_001178088 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 158.25-31 chr3 52125915 52126112 + 1 NA intron (NM_015426, intron 7 of 10) intron (NM_015426, intron 7 of 10) 28410 NM_001161581 25886 Hs.476306 NM_015426 ENSG00000164087 POC1A PIX2|SOFT|WDR51A POC1 centriolar protein A protein-coding 312.5-7 chr2 198625347 198625754 + 1 NA Intergenic Intergenic -250453 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 229.5-22 chr16 57585318 57585734 + 1 NA Intergenic L1MB7|LINE|L1 -34212 NM_001370436 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 133.25-76 chr7 77941945 77942142 + 1 NA intron (NM_020432, intron 12 of 16) L2c|LINE|L2 101913 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 147.75-6 chr1 223203962 223204114 + 1 NA Intergenic Intergenic -60790 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 141.25-49 chr20 4397272 4397591 + 1 NA Intergenic L1MA7|LINE|L1 -148144 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 190.5-11 chr10 86906185 86906419 + 1 NA intron (NM_004329, intron 7 of 12) L1MEf|LINE|L1 -49457 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 192.5-47 chr5 52193530 52193874 + 1 NA Intergenic Intergenic 185671 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 133.75-59 chr4 94075538 94075762 + 1 NA Intergenic Intergenic 131906 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 146.25-25 chr14 96410076 96410318 + 1 NA intron (NM_001350890, intron 4 of 16) L2c|LINE|L2 18069 NM_001350888 122481 Hs.667462 NM_152327 ENSG00000140057 AK7 AK 7|SPGF27 adenylate kinase 7 protein-coding 164.5-90 chr7 77744373 77744678 + 1 NA intron (NM_198467, intron 2 of 7) Alu|SINE|Alu -47180 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 293.5-9 chr17 71120202 71120680 + 1 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 81738 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 194.5-62 chr5 107485047 107485276 + 1 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 185776 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 217.25-7 chr10 115067021 115067392 + 1 NA Intergenic MIRb|SINE|MIR -26159 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 115.5-30 chr14 67333049 67333239 + 1 NA 3' UTR (NM_022474, exon 15 of 15) 3' UTR (NM_022474, exon 15 of 15) 26660 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 128.75-45 chr2 127053800 127054053 + 1 NA exon (NM_001320641, exon 12 of 18) exon (NM_001320641, exon 12 of 18) 28139 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 145.5-101 chr9 130473554 130473811 + 1 NA intron (NM_054012, intron 8 of 14) intron (NM_054012, intron 8 of 14) 28721 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 179.25-14 chr14 23554845 23555065 + 1 NA intron (NR_046052, intron 2 of 2) intron (NR_046052, intron 2 of 2) -1027 NM_001256062 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 185.5-74 chr9 7161997 7162315 + 1 NA intron (NR_148680, intron 19 of 21) intron (NR_148680, intron 19 of 21) 404806 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 155.75-43 chr4 53808908 53809139 + 1 NA Intergenic MER1B|DNA|hAT-Charlie 113122 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 212.5-15 chr14 70957498 70957795 + 1 NA intron (NM_014982, intron 2 of 35) L1MB7|LINE|L1 50187 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 265.25-21 chr3 106298784 106299245 + 1 NA Intergenic Intergenic -429613 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 170.5-59 chr5 24772614 24772933 + 1 NA Intergenic L1MA8|LINE|L1 67810 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 124.25-52 chr2 192340696 192340923 + 1 NA Intergenic Intergenic -145876 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 159.75-53 chr5 127910198 127910523 + 1 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 172815 NR_152801 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 232.25-10 chr18 63976032 63976473 + 1 NA intron (NM_001366198, intron 1 of 6) intron (NM_001366198, intron 1 of 6) 6171 NM_001348367 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 175.25-45 chr5 149557150 149557421 + 1 NA Intergenic LTR47A|LTR|ERVL -5846 NM_001271741 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 140.25-21 chr14 49044102 49044418 + 1 NA Intergenic Intergenic 542120 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 336.5-8 chr5 16012293 16012668 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 77298 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 135.5-63 chr20 47282739 47283070 + 1 NA intron (NM_001281774, intron 10 of 23) intron (NM_001281774, intron 10 of 23) -35598 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 173.5-18 chr14 24153873 24154138 + 1 NA intron (NM_001310332, intron 11 of 20) L1MD2|LINE|L1 6507 NM_017999 55072 Hs.375217 NM_017999 ENSG00000092098 RNF31 HOIP|Paul|ZIBRA ring finger protein 31 protein-coding 141.5-118 chr9 35510387 35510658 + 1 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 20411 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 130.5-97 chr8 84791368 84791507 + 1 NA intron (NM_001354322, intron 3 of 6) L2a|LINE|L2 85510 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 131.5-38 chr2 54719435 54719713 + 1 NA Intergenic HAL1b|LINE|L1 -5438 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 220.25-18 chr17 60711606 60711954 + 1 NA intron (NM_001330413, intron 5 of 25) AluJb|SINE|Alu 33929 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 184.5-66 chr5 148141841 148142067 + 1 NA Intergenic Intergenic -26592 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 188.5-33 chr21 17903285 17903510 + 1 NA Intergenic Tigger16b|DNA|TcMar-Tigger -13943 NM_001204175 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 226.5-11 chr11 104936028 104936383 + 1 NA Intergenic L1MA2|LINE|L1 -18030 NR_034079 643733 Hs.713751 NR_034078 ENSG00000235505 CASP17P - caspase 17, pseudogene pseudo 139.5-35 chr17 60548734 60548916 + 1 NA Intergenic Intergenic -15721 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 187.75-12 chr14 50720104 50720476 + 1 NA 3' UTR (NM_020921, exon 31 of 31) 3' UTR (NM_020921, exon 31 of 31) -51984 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 177.25-56 chrX 51308477 51308703 + 1 NA Intergenic L1PA13|LINE|L1 -23641 NM_153183 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 185.75-26 chr16 82937623 82937878 + 1 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 52548 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 151.25-19 chr14 81120521 81120818 + 1 NA intron (NM_000369, intron 8 of 9) L1M3|LINE|L1 82165 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 187.25-37 chr3 31093002 31093291 + 1 NA Intergenic Intergenic 68641 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 119.25-25 chr14 55802139 55802350 + 1 NA Intergenic LTR8|LTR|ERV1 -5570 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 156.25-73 chr8 126830808 126830985 + 1 NA Intergenic L1MD|LINE|L1 -182258 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 162.75-76 chr8 141829772 141829965 + 1 NA Intergenic Intergenic -43555 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 115.5-86 chr7 9820068 9820246 + 1 NA Intergenic Charlie20a|DNA|hAT-Charlie 185887 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 244.75-24 chr6 132366986 132367496 + 1 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 34234 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 113.5-41 chr15 62033892 62034125 + 1 NA intron (NM_001018088, intron 4 of 81) L1ME4c|LINE|L1 26439 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 229.5 chr1 87186153 87186500 + 1 NA Intergenic Intergenic -26343 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 151.5-65 chr5 72351619 72351833 + 1 NA intron (NM_001284405, intron 7 of 8) THE1D|LTR|ERVL-MaLR 31353 NM_001284403 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 209.5-46 chr7 28961427 28961709 + 1 NA Intergenic AluSx|SINE|Alu -3238 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 252.25 chr11 9829501 9829901 + 1 NA intron (NM_030962, intron 27 of 39) intron (NM_030962, intron 27 of 39) -9441 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 144.75-17 chr10 103714589 103714924 + 1 NA intron (NM_014631, intron 5 of 13) intron (NM_014631, intron 5 of 13) -32023 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 191.25-24 chr15 62947521 62947793 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -95090 NM_001365776 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 144.5-25 chr11 102844581 102844761 + 1 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -1062 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 260.5-19 chr2 74725154 74725627 + 1 NA Intergenic HAL1|LINE|L1 71143 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 191.5-43 chr4 1427139 1427486 + 1 NA Intergenic L1MA2|LINE|L1 -20870 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 174.5-19 chr12 33884554 33884829 + 1 NA Intergenic L1MD3|LINE|L1 -137805 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 134.5-79 chr5 137918367 137918690 + 1 NA intron (NM_001300921, intron 8 of 14) L1M4c|LINE|L1 29071 NM_001258448 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 170.25-72 chr9 98843899 98844202 + 1 NA intron (NM_024642, intron 7 of 9) intron (NM_024642, intron 7 of 9) 36380 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 189.5-61 chr7 52690446 52690772 + 1 NA Intergenic Intergenic -345024 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 189.25-2 chr1 66721427 66721829 + 1 NA intron (NM_001350218, intron 17 of 22) AluJb|SINE|Alu -30831 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 247.25-27 chr7 53205468 53205767 + 1 NA Intergenic Intergenic 169984 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 122.5-101 chr9 27975948 27976102 + 1 NA intron (NM_001354574, intron 5 of 5) MIR|SINE|MIR -402159 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 173.25-62 chr6 79904796 79905060 + 1 NA Intergenic ERVL-E-int|LTR|ERVL 42625 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 195.5-60 chr4 58562735 58563044 + 1 NA Intergenic L3|LINE|CR1 -26561 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 146.25-48 chr21 44991961 44992225 + 1 NA intron (NR_033840, intron 1 of 1) intron (NR_033840, intron 1 of 1) 1993 NR_033840 727699 Hs.397403 NR_033840 ENSG00000234880 LINC00163 C21orf134|NCRNA00163|NLC1-A|NLC1A long intergenic non-protein coding RNA 163 ncRNA 152.75-13 chr12 119813711 119814038 + 1 NA intron (NM_007174, intron 9 of 46) L4_A_Mam|LINE|RTE-X 63446 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 187.5-6 chr1 243899447 243899797 + 1 NA Intergenic L2b|LINE|L2 -17780 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 271.5-4 chr14 51315552 51315912 + 1 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 12653 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 129.25-53 chr3 106897563 106897890 + 1 NA Intergenic Intergenic 342912 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 141.5-102 chr6 121899128 121899363 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 463599 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 152.5-51 chr2 107251055 107251331 + 1 NA intron (NR_049853, intron 2 of 3) L1MC1|LINE|L1 98332 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 173.5-3 chr1 118924139 118924389 + 1 NA intron (NM_152380, intron 4 of 7) intron (NM_152380, intron 4 of 7) 64079 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 172.5-21 chr17 34420937 34421177 + 1 NA Intergenic L2a|LINE|L2 -57824 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 129.75-68 chr5 175429712 175429938 + 1 NA Intergenic L1MC3|LINE|L1 14357 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 180.75-30 chr16 61487407 61487660 + 1 NA Intergenic GA-rich|Low_complexity|Low_complexity -431767 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 136.75-74 chr4 49108268 49108602 + 1 NA Intergenic (CATTC)n|Satellite|Satellite 121793 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 165.25-19 chr18 7408316 7408601 + 1 NA Intergenic L1MA8|LINE|L1 52548 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 184.5-62 chr5 45987766 45988028 + 1 NA Intergenic ALR/Alpha|Satellite|centr -291517 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 123.75-71 chr3 88907634 88907872 + 1 NA Intergenic L1MC3|LINE|L1 -199868 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 202.25-27 chr3 195315720 195316042 + 1 NA intron (NM_012287, intron 10 of 22) intron (NM_012287, intron 10 of 22) -44722 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 172.25-14 chr12 40984916 40985173 + 1 NA intron (NM_001843, intron 16 of 23) L1M4b|LINE|L1 76687 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 161.25-9 chr10 44544100 44544363 + 1 NA Intergenic L1MD|LINE|L1 -159134 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 265.5-27 chr8 109988844 109989422 + 1 NA Intergenic Intergenic -13362 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 195.25-30 chr22 47927175 47927574 + 1 NA Intergenic LTR8|LTR|ERV1 295700 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 135.5-64 chr20 50695056 50695222 + 1 NA Intergenic Intergenic -3597 NM_001290268 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 168.5-48 chr2 206438849 206439151 + 1 NA Intergenic Intergenic -4532 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 123.75-61 chr20 49110160 49110375 + 1 NA Intergenic L1MB3|LINE|L1 63955 NM_001316 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 135.5-111 chr9 10660641 10660897 + 1 NA Intergenic Intergenic 47563 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 143.25-27 chr14 73793875 73794078 + 1 NA intron (NR_109995, intron 2 of 2) intron (NR_109995, intron 2 of 2) 6616 NR_109995 100506476 Hs.287299 NR_109995 LOC100506476 - uncharacterized LOC100506476 ncRNA 119.5-83 chr3 171054267 171054403 + 1 NA Intergenic Intergenic -27615 NM_001278659 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 220.75-8 chr14 74419526 74419796 + 1 NA intron (NM_001105579, intron 1 of 3) L2c|LINE|L2 6549 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 141.25-44 chr19 10752619 10752810 + 1 NA intron (NM_001005362, intron 1 of 19) MIRb|SINE|MIR -27540 NR_039903 100616425 NR_039903 ENSG00000265879 MIR4748 mir-4748 microRNA 4748 ncRNA 125.5-12 chr10 25485452 25485694 + 1 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -166139 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 174.5-41 chr2 96302890 96303072 + 1 NA intron (NM_014014, intron 3 of 44) MER21B|LTR|ERVL 2565 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 184.5-14 chr11 66591264 66591527 + 1 NA exon (NM_018219, exon 1 of 1) exon (NM_018219, exon 1 of 1) 1668 NM_018219 55231 Hs.121072 NM_018219 ENSG00000182791 CCDC87 - coiled-coil domain containing 87 protein-coding 220.25-21 chr2 83032078 83032358 + 1 NA Intergenic Intergenic 175415 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 196.75-19 chr2 226260819 226261149 + 1 NA Intergenic L2a|LINE|L2 118190 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 204.5-54 chr7 6176349 6176797 + 1 NA intron (NM_001367581, intron 5 of 13) L1M4|LINE|L1 -4436 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 164.5-27 chr16 71974710 71974987 + 1 NA intron (NM_181536, intron 11 of 29) intron (NM_181536, intron 11 of 29) 25130 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 137.5-6 chr10 8749310 8749539 + 1 NA Intergenic Intergenic -148565 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 223.5-42 chr20 3531072 3531364 + 1 NA intron (NM_001323332, intron 1 of 25) intron (NM_001323332, intron 1 of 25) 60200 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 117.5-38 chr18 9534495 9534708 + 1 NA intron (NM_006788, intron 9 of 9) intron (NM_006788, intron 9 of 9) 59088 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 128.75-73 chr5 449243 449427 + 1 NA intron (NM_007277, intron 3 of 12) L1MB3|LINE|L1 6159 NM_007277 11336 Hs.481464 NM_007277 ENSG00000180104 EXOC3 SEC6|SEC6L1|Sec6p exocyst complex component 3 protein-coding 152.25-68 chr8 111262509 111262670 + 1 NA Intergenic LTR16B|LTR|ERVL -26386 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 197.25-23 chr14 24544182 24544502 + 1 NA Intergenic Intergenic 31908 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 222.75-15 chr15 23902558 23902928 + 1 NA Intergenic L1MC3|LINE|L1 -72404 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 141.25-26 chr13 25508040 25508340 + 1 NA intron (NM_016529, intron 2 of 36) intron (NM_016529, intron 2 of 36) 39416 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 164.5-24 chr15 94026040 94026292 + 1 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 81772 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 296.5-16 chr3 179294203 179294626 + 1 NA Intergenic L1ME3B|LINE|L1 -27364 NM_171828 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 165.5-76 chr6 116160230 116160510 + 1 NA intron (NM_152729, intron 6 of 11) L1PA17|LINE|L1 -34238 NM_000493 1300 Hs.520339 NM_000493 ENSG00000123500 COL10A1 - collagen type X alpha 1 chain protein-coding 118.25-114 chr8 124777709 124777846 + 1 NA Intergenic L1MC4|LINE|L1 -44208 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 119.5-80 chr3 83317244 83317381 + 1 NA Intergenic MER54A|LTR|ERVL 1331170 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 235.25-26 chr6 100999445 100999767 + 1 NA Intergenic MER135|DNA|DNA -118234 NM_022091 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 193.5-14 chr11 95769049 95769405 + 1 NA 3' UTR (NM_144664, exon 10 of 10) 3' UTR (NM_144664, exon 10 of 10) 20555 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 143.25-43 chr21 31956815 31957126 + 1 NA intron (NM_014586, intron 4 of 10) intron (NM_014586, intron 4 of 10) 83950 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 213.25-10 chr11 95028577 95028950 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 3505 NM_001161630 390245 Hs.714692 NM_001161630 ENSG00000235268 KDM4E JMJD2E|KDM4DL|KDM5E lysine demethylase 4E protein-coding 120.5-92 chr6 119074533 119074709 + 1 NA intron (NM_001288576, intron 1 of 15) LTR78|LTR|ERV1 4043 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 173.5-83 chr5 57530059 57530401 + 1 NA Intergenic MIRc|SINE|MIR -40112 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 231.75-10 chr18 1157346 1157733 + 1 NA Intergenic L1MA2|LINE|L1 202090 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 158.5-16 chr10 70907458 70907752 + 1 NA Intergenic Intergenic -19040 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 180.5-58 chr3 56805173 56805469 + 1 NA intron (NM_001128615, intron 4 of 12) AluJb|SINE|Alu -3372 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 121.75-99 chrX 77996390 77996554 + 1 NA intron (NM_001282224, intron 4 of 21) intron (NM_001282224, intron 4 of 21) -26834 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 153.25-23 chr18 76602310 76602540 + 1 NA Intergenic L3|LINE|CR1 -17352 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 192.5-51 chr7 13827369 13827740 + 1 NA Intergenic Charlie21a|DNA|hAT-Charlie 158960 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 205.25-41 chr7 48959474 48959850 + 1 NA Intergenic Intergenic 35115 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 134.5-82 chr6 53905973 53906153 + 1 NA intron (NM_018214, intron 10 of 13) intron (NM_018214, intron 10 of 13) -23919 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 218.5-56 chr8 144406962 144407212 + 1 NA intron (NM_013291, intron 2 of 37).2 AluSx1|SINE|Alu 2248 NM_013291 29894 Hs.493202 NM_013291 ENSG00000071894 CPSF1 CPSF160|HSU37012|P/cl.18 cleavage and polyadenylation specific factor 1 protein-coding 138.5-53 chr19 49917715 49917875 + 1 NA intron (NM_001193357, intron 1 of 1) AluSx|SINE|Alu -10907 NM_012068 22809 Hs.9754 NM_012068 ENSG00000169136 ATF5 ATFX|HMFN0395 activating transcription factor 5 protein-coding 158.5-94 chr7 53252272 53252462 + 1 NA Intergenic Intergenic 216734 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 282.5-19 chr7 85776756 85777083 + 1 NA Intergenic Intergenic 355797 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 134.25-3 chr1 181729986 181730173 + 1 NA intron (NM_001205294, intron 18 of 45) intron (NM_001205294, intron 18 of 45) 246562 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 194.5-22 chr14 50929803 50930047 + 1 NA intron (NM_002863, intron 4 of 19) intron (NM_002863, intron 4 of 19) 14558 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 153.25-43 chr4 184324058 184324343 + 1 NA Intergenic Intergenic 29777 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 206.25-34 chr6 66757254 66757714 + 1 NA Intergenic L1ME3C|LINE|L1 969605 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 143.75-80 chr7 97394168 97394331 + 1 NA Intergenic L1ME3D|LINE|L1 277656 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 125.25-58 chr4 58517138 58517338 + 1 NA Intergenic Intergenic 19090 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 148.5-67 chr3 194343389 194343628 + 1 NA intron (NM_001080513, intron 1 of 1) Charlie8|DNA|hAT-Charlie 7820 NM_001080513 1370 Hs.528368 NM_001309 ENSG00000178772 CPN2 ACBP carboxypeptidase N subunit 2 protein-coding 144.5-79 chr4 79399957 79400164 + 1 NA Intergenic Intergenic 8168 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 132.5-42 chr17 63207858 63208076 + 1 NA intron (NM_025185, intron 6 of 25) L1ME3E|LINE|L1 232300 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 147.5-85 chr9 38404690 38404995 + 1 NA Intergenic MIRc|SINE|MIR 12140 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 240.75-20 chr2 149136326 149136574 + 1 NA intron (NM_001317004, intron 3 of 6) intron (NM_001317004, intron 3 of 6) 18276 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 284.5-18 chr3 155392909 155393407 + 1 NA Intergenic L1ME5|LINE|L1 -92645 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 185.75-33 chr2 234944142 234944375 + 1 NA Intergenic L1MA7|LINE|L1 -7759 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 115.25-81 chr5 148064375 148064550 + 1 NA intron (NM_006846, intron 1 of 32) intron (NM_006846, intron 1 of 32) 482 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 187.5-54 chr3 152593432 152593803 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -241514 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 186.25-13 chr12 2857424 2857647 + 1 NA promoter-TSS (NM_001365175) promoter-TSS (NM_001365175) -496 NM_001365175 101929469 Hs.634625 NM_001365174 ENSG00000283297 TEX52 - testis expressed 52 protein-coding 234.25-38 chr8 144794982 144795309 + 1 NA Intergenic MIRb|SINE|MIR -2755 NM_033301 6132 Hs.178551 NM_000973 ENSG00000161016 RPL8 L8 ribosomal protein L8 protein-coding 189.25-22 chr2 51669661 51670112 + 1 NA intron (NR_135237, intron 5 of 10) L1M4|LINE|L1 637285 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 158.5-75 chr3 172251038 172251283 + 1 NA intron (NM_001135095, intron 5 of 25) intron (NM_001135095, intron 5 of 25) 197296 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 140.75-61 chr7 54727379 54727519 + 1 NA Intergenic Intergenic 31762 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 186.5-15 chr12 5125904 5126153 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 82149 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 207.5-29 chr2 105423066 105423412 + 1 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) 15274 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 157.5-85 chr5 174152842 174153031 + 1 NA Intergenic MIRb|SINE|MIR 107230 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 274.25 chr10 57725060 57725592 + 1 NA Intergenic Intergenic -420767 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 124.25-24 chr12 80896829 80896984 + 1 NA intron (NM_004664, intron 1 of 5) intron (NM_004664, intron 1 of 5) 38927 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 155.25-8 chr11 19920226 19920395 + 1 NA intron (NM_182964, intron 6 of 37) AluSc8|SINE|Alu -102246 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 160.75-41 chr22 24953805 24954013 + 1 NA Intergenic MIRc|SINE|MIR -7214 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 212.5-24 chr18 75680167 75680395 + 1 NA Intergenic Intergenic 32122 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 165.75-15 chr12 8898159 8898425 + 1 NA Intergenic AluSz|SINE|Alu -16217 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 159.25-29 chr18 40572626 40572842 + 1 NA Intergenic Intergenic 506448 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 147.75-44 chr22 32477036 32477210 + 1 NA intron (NM_001033024, intron 1 of 8) intron (NM_001033024, intron 1 of 8) 1886 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 194.5-78 chr8 125122767 125123086 + 1 NA intron (NM_001349486, intron 3 of 7) MER58A|DNA|hAT-Charlie 31066 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 160.25-7 chr11 34950160 34950398 + 1 NA intron (NM_001166158, intron 3 of 5) BLACKJACK|DNA|hAT-Blackjack 8442 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 161.5-22 chr11 76449465 76449788 + 1 NA intron (NM_001300942, intron 2 of 21) intron (NM_001300942, intron 2 of 21) 4601 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 200.5-11 chr10 121289278 121289584 + 1 NA Intergenic Intergenic 241883 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 113.25-99 chr5 151166661 151166843 + 1 NA Intergenic Intergenic -8973 NM_001363114 309 Hs.412117 NM_001155 ENSG00000197043 ANXA6 ANX6|CBP68|CPB-II|p68|p70 annexin A6 protein-coding 156.75-75 chr5 39869486 39869982 + 1 NA Intergenic L1PA16|LINE|L1 -182557 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 144.25-42 chr2 238827395 238827597 + 1 NA Intergenic L1ME1|LINE|L1 20411 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 118.25-117 chr8 137053790 137053985 + 1 NA Intergenic L1MB2|LINE|L1 359701 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 207.5-37 chr3 2143865 2144213 + 1 NA intron (NR_046555, intron 1 of 2) intron (NR_046555, intron 1 of 2) 202 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 184.25-10 chr12 91316917 91317417 + 1 NA Intergenic Intergenic -134350 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 233.25-40 chr9 80264325 80264598 + 1 NA Intergenic Intergenic 289438 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 141.75-50 chr21 21307388 21307549 + 1 NA intron (NM_001352592, intron 6 of 18) MLT1E2|LTR|ERVL-MaLR 160306 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 136.25-18 chr12 15997807 15998189 + 1 NA intron (NM_015954, intron 6 of 8) MIR3|SINE|MIR 86666 NM_015954 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 154.75-66 chr9 123042771 123042963 + 1 NA intron (NM_012197, intron 13 of 25) HAL1|LINE|L1 9224 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 200.75-5 chr10 12011523 12011816 + 1 NA intron (NM_080599, intron 4 of 21) AluSp|SINE|Alu 31140 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 177.75-36 chr3 71506951 71507232 + 1 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 34998 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 141.25-42 chr18 9798002 9798297 + 1 NA intron (NM_006868, intron 3 of 6) intron (NM_006868, intron 3 of 6) -87824 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 139.5-32 chr15 77460098 77460275 + 1 NA intron (NM_001304505, intron 2 of 9) L2a|LINE|L2 39298 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 252.5 chr1 93570490 93570797 + 1 NA intron (NM_001308251, intron 5 of 7) intron (NM_001308251, intron 5 of 7) 14519 NM_001308251 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 152.25-2 chr1 56197738 56198096 + 1 NA Intergenic MamRep1527|LTR|LTR -217046 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 121.5-91 chr4 123616274 123616407 + 1 NA Intergenic Intergenic -33651 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 161.75-6 chr11 19093245 19093537 + 1 NA Intergenic MIRb|SINE|MIR -23754 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 185.25-6 chr1 194728737 194728977 + 1 NA Intergenic Intergenic 1359858 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 260.75-21 chr7 55366781 55367053 + 1 NA intron (NM_018697, intron 1 of 8) MER34|LTR|ERV1 1469 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 142.5-20 chr12 28937075 28937248 + 1 NA Intergenic Intergenic -212117 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 189.5-41 chr4 31338329 31338581 + 1 NA Intergenic Intergenic 167311 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 138.5-37 chr15 75473558 75473761 + 1 NA intron (NM_002833, intron 10 of 12) intron (NM_002833, intron 10 of 12) -17844 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 159.5-73 chr6 55274920 55275081 + 1 NA intron (NM_001526, intron 5 of 7) L1M5|LINE|L1 -52469 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 130.5-50 chr2 196974063 196974279 + 1 NA Intergenic AluJb|SINE|Alu -47464 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 196.5-70 chr7 52739276 52739531 + 1 NA Intergenic L1MC1|LINE|L1 -296230 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 156.5-77 chr7 110156325 110156557 + 1 NA Intergenic Intergenic -196228 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 183.75-6 chr10 56373803 56374099 + 1 NA Intergenic Intergenic -12678 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 126.5-110 chr7 53691536 53691780 + 1 NA intron (NR_038371, intron 5 of 5) L1MB7|LINE|L1 120273 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 233.75-9 chr13 48488479 48488975 + 1 NA TTS (NR_147985) TTS (NR_147985) -44058 NM_005767 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 283.75-12 chr4 113878056 113878544 + 1 NA Intergenic HERV35I-int|LTR|ERV1 101347 NM_024590 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 236.5-20 chr17 21863320 21863648 + 1 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 170961 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 130.5-59 chr3 2892446 2892754 + 1 NA intron (NM_175613, intron 1 of 15) intron (NM_175613, intron 1 of 15) 385 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 164.25-31 chr2 99205094 99205291 + 1 NA Intergenic MER11C|LTR|ERVK 24008 NM_145212 51263 Hs.346736 NM_016503 ENSG00000185414 MRPL30 L28MT|L30MT|MRP-L28|MRP-L30|MRPL28|MRPL28M|RPML28 mitochondrial ribosomal protein L30 protein-coding 127.75-60 chr4 33113913 33114174 + 1 NA Intergenic MIR|SINE|MIR 763005 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 120.5-113 chr9 89742061 89742234 + 1 NA Intergenic L1ME1|LINE|L1 102364 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 138.25-26 chr14 55082303 55082549 + 1 NA Intergenic AluJb|SINE|Alu 30779 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 129.75-69 chr6 2442902 2443204 + 1 NA Intergenic (TCTTT)n|Simple_repeat|Simple_repeat -191447 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 179.5-61 chr20 22636882 22637194 + 1 NA Intergenic L1M4|LINE|L1 -29521 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 243.75-10 chr17 70659577 70659952 + 1 NA Intergenic AluJb|SINE|Alu 490229 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 152.5-100 chr8 101118472 101118628 + 1 NA Intergenic MIR|SINE|MIR 66496 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 256.25-20 chrX 50121897 50122194 + 1 NA Intergenic L1MD2|LINE|L1 52544 NM_001282163 1184 Hs.166486 NM_000084 ENSG00000171365 CLCN5 CLC5|CLCK2|ClC-5|DENTS|NPHL1|NPHL2|XLRH|XRN|hCIC-K2 chloride voltage-gated channel 5 protein-coding 277.25-21 chr4 44307707 44308230 + 1 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 140841 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 283.5-5 chr11 106207590 106208036 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -42206 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 229.5-45 chr7 17285929 17286181 + 1 NA Intergenic Intergenic -12597 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 283.25-14 chr7 27581089 27581484 + 1 NA intron (NM_152740, intron 4 of 7) L2a|LINE|L2 -34688 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 129.75-38 chr2 83224122 83224280 + 1 NA Intergenic Intergenic -298613 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 126.75-87 chr7 4308943 4309116 + 1 NA Intergenic AluJr|SINE|Alu -174192 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 215.5-33 chr4 37553223 37553537 + 1 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) -30853 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 123.75-93 chr6 132404966 132405244 + 1 NA Intergenic Intergenic -3630 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 139.25-18 chr11 99370419 99370792 + 1 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -185540 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 132.5-63 chr20 51422939 51423105 + 1 NA intron (NM_012340, intron 9 of 10) AluJo|SINE|Alu 29955 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 144.5-93 chr6 13932355 13932566 + 1 NA intron (NM_001165033, intron 1 of 1) MamRep1151|LTR?|LTR? 7267 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 121.5-97 chr5 54302478 54302627 + 1 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 8021 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 183.5-47 chr3 63659947 63660208 + 1 NA intron (NM_001080537, intron 3 of 3) L2b|LINE|L2 7402 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 157.5-86 chr6 2363389 2363589 + 1 NA intron (NR_046229, intron 4 of 6) MLT1I|LTR|ERVL-MaLR 117736 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 165.5-35 chr16 24388619 24388910 + 1 NA Intergenic LTR39|LTR|ERV1 133211 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 143.75-76 chr7 8891463 8891655 + 1 NA Intergenic L1MD1|LINE|L1 457950 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 136.5-100 chr7 13098891 13099052 + 1 NA Intergenic Intergenic 411338 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 155.75-20 chr16 66103710 66104035 + 1 NA Intergenic Intergenic -262819 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 148.25-51 chr3 105231006 105231156 + 1 NA Intergenic L1MC3|LINE|L1 -135632 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 135.25-46 chr2 72720515 72720719 + 1 NA intron (NR_135774, intron 5 of 19) AluSz|SINE|Alu 105416 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 148.5-57 chr22 36689061 36689438 + 1 NA intron (NM_006078, intron 1 of 3) L2b|LINE|L2 13609 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 292.75 chr1 32351592 32352147 + 1 NA Intergenic CpG 10374 NM_001167676 100128071 Hs.512763 NM_001167676 ENSG00000225828 FAM229A - family with sequence similarity 229 member A protein-coding 113.25-102 chr6 72137342 72137467 + 1 NA intron (NM_014989, intron 4 of 33) L1ME3G|LINE|L1 -75489 NM_001350447 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 173.5-2 chr1 86247514 86247835 + 1 NA Intergenic Intergenic -90690 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 274.5-13 chr2 18858940 18859332 + 1 NA Intergenic L1PA16|LINE|L1 167835 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 226.5-46 chr6 65056116 65056476 + 1 NA intron (NM_001292009, intron 13 of 43) L1MC3|LINE|L1 -245122 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 293.25-18 chr8 114247101 114247638 + 1 NA Intergenic AluJb|SINE|Alu -810430 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 125.5-9 chr1 218246878 218247031 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -38339 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 195.5-34 chr18 60618455 60618719 + 1 NA Intergenic Intergenic -245812 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 117.5-72 chr4 155671757 155671923 + 1 NA intron (NM_000856, intron 3 of 10) L3|LINE|CR1 4178 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 211.5-43 chr5 165002606 165002946 + 1 NA Intergenic L1ME3B|LINE|L1 532497 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 158.25-10 chr11 12429983 12430426 + 1 NA intron (NM_018222, intron 1 of 12) MER63D|DNA|hAT-Blackjack 52633 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 143.75-35 chr14 64416095 64416385 + 1 NA intron (NM_005956, intron 6 of 27) AluSx|SINE|Alu 27887 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 154.75-19 chr15 79381553 79381861 + 1 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -50809 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 201.5-35 chr20 19361387 19361714 + 1 NA intron (NM_020689, intron 2 of 16) L1ME2z|LINE|L1 -76954 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 160.5-7 chr10 98567876 98568220 + 1 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -121085 NM_001322491 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 168.75-59 chr7 102082876 102083273 + 1 NA intron (NM_001202545, intron 4 of 21) L1ME2|LINE|L1 -202067 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 180.5-8 chr10 88113353 88113711 + 1 NA Intergenic L2b|LINE|L2 249907 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 134.5-52 chr21 28782296 28782516 + 1 NA Intergenic Intergenic 102961 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 201.5-33 chr2 160679782 160680002 + 1 NA Intergenic Helitron1Na_Mam|RC|Helitron -186085 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 162.5-34 chr18 11488728 11488973 + 1 NA non-coding (NR_110779, exon 2 of 4) non-coding (NR_110779, exon 2 of 4) 280 NR_110779 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 144.5-43 chr15 91084912 91085183 + 1 NA Intergenic L1MB3|LINE|L1 -14541 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 152.75-14 chr13 59586558 59586881 + 1 NA Intergenic MIR3|SINE|MIR -425999 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 168.75-5 chr11 59660385 59660568 + 1 NA intron (NM_152716, intron 2 of 18) L2a|LINE|L2 8561 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 233.25-6 chr13 74415171 74415457 + 1 NA intron (NR_144452, intron 1 of 1) intron (NR_144452, intron 1 of 1) 3801 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 113.75-107 chr8 68028992 68029243 + 1 NA intron (NM_024870, intron 5 of 39) intron (NM_024870, intron 5 of 39) 77071 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 157.5-63 chr22 48324697 48325002 + 1 NA Intergenic Intergenic 50485 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 152.25-74 chrX 38681423 38681686 + 1 NA intron (NM_004615, intron 6 of 7) intron (NM_004615, intron 6 of 7) -119878 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 191.5-5 chr1 107399733 107399952 + 1 NA intron (NM_001113226, intron 3 of 6) intron (NM_001113226, intron 3 of 6) 251773 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 193.5-24 chr18 3715691 3715930 + 1 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 112073 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 223.25-25 chr6 98272345 98272775 + 1 NA Intergenic Intergenic 248029 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 116.25-34 chr17 33897798 33898006 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 258904 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 129.25-51 chr3 29235935 29236104 + 1 NA Intergenic AluY|SINE|Alu 44920 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 244.75-19 chr5 125769880 125770189 + 1 NA Intergenic L1MA5|LINE|L1 276773 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 356.75-2 chr10 76773190 76773786 + 1 NA Intergenic Intergenic -114556 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 153.5-72 chr4 104818648 104818949 + 1 NA Intergenic Intergenic -323904 NM_025212 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 178.5-63 chr5 108664959 108665194 + 1 NA Intergenic MER119|DNA|hAT-Charlie 63185 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 144.25-50 chr3 102239135 102239423 + 1 NA Intergenic Intergenic 75574 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 114.5-79 chr4 94698293 94698561 + 1 NA Intergenic Intergenic 59106 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 117.25-71 chr4 121112787 121112975 + 1 NA Intergenic Charlie16a|DNA|hAT-Charlie -40346 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 126.75-48 chr2 198039857 198039997 + 1 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 235334 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 118.75-8 chr1 173744827 173745000 + 1 NA intron (NM_014458, intron 3 of 11) L1MC4a|LINE|L1 29932 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 129.5-66 chr3 138767390 138767596 + 1 NA intron (NM_006219, intron 2 of 23) MER52A|LTR|ERV1 -59872 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 166.75-27 chr2 7322872 7323161 + 1 NA Intergenic Intergenic -98245 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 232.5-29 chr4 10932385 10932658 + 1 NA Intergenic Intergenic -247753 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 180.75-50 chr5 87969613 87969856 + 1 NA Intergenic Intergenic 299111 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 204.75-2 chr1 233299700 233300169 + 1 NA Intergenic Intergenic -4209 NM_001328607 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 158.5-39 chr16 7929579 7929855 + 1 NA Intergenic MSTB2|LTR|ERVL-MaLR 596872 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 168.5-17 chr13 28227377 28227744 + 1 NA intron (NM_175854, intron 6 of 18) MIR3|SINE|MIR -88386 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 117.75-81 chr8 81034633 81034986 + 1 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 77259 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 134.5-54 chr22 26007711 26007938 + 1 NA intron (NM_001318245, intron 42 of 43) L1ME3G|LINE|L1 -161638 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 119.5-122 chr8 80843180 80843379 + 1 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 31189 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 190.5-58 chr4 137316031 137316302 + 1 NA Intergenic L1MD2|LINE|L1 -103367 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 185.5-59 chr5 20100292 20100583 + 1 NA intron (NM_001291956, intron 2 of 14) MADE1|DNA|TcMar-Mariner -112237 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 132.25-14 chr11 25597848 25598175 + 1 NA Intergenic Intergenic -591112 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 208.25-42 chr8 84965220 84965494 + 1 NA Intergenic Intergenic -141881 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 156.5-37 chr2 201894264 201894444 + 1 NA 3' UTR (NM_001261435, exon 14 of 14) 3' UTR (NM_001261435, exon 14 of 14) 87775 NM_001261435 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 141.5-101 chr6 54623882 54624161 + 1 NA Intergenic Intergenic -222750 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 153.75-49 chr22 27021074 27021317 + 1 NA Intergenic Intergenic 39323 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 261.75-25 chr7 3507955 3508283 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 206867 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 207.25-34 chr9 29571518 29571801 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -358058 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 158.75-14 chr12 56680099 56680291 + 1 NA intron (NM_001282601, intron 1 of 6) AluSz|SINE|Alu 7802 NR_104219 10728 Hs.50425 NM_006601 ENSG00000110958 PTGES3 P23|TEBP|cPGES prostaglandin E synthase 3 protein-coding 145.5-94 chr8 86449306 86449563 + 1 NA intron (NM_007013, intron 20 of 24) MER58B|DNA|hAT-Charlie 59252 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 229.25-21 chr5 23539673 23539957 + 1 NA Intergenic Intergenic 32160 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 146.75-18 chr15 60101731 60101885 + 1 NA Intergenic Intergenic 97497 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 127.5-98 chr5 60088281 60088428 + 1 NA intron (NM_001349243, intron 2 of 16) L1MA4|LINE|L1 -194628 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 178.5-29 chr2 114218019 114218212 + 1 NA Intergenic Intergenic -224526 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209.25-47 chr8 55075104 55075498 + 1 NA Intergenic AluYb8|SINE|Alu -26727 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 204.75-48 chr8 82716749 82716982 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -195239 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 147.5-4 chr1 108737403 108737615 + 1 NA exon (NM_001144937, exon 11 of 13) exon (NM_001144937, exon 11 of 13) -9165 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 175.75-15 chr18 10779021 10779448 + 1 NA intron (NM_022068, intron 17 of 51) intron (NM_022068, intron 17 of 51) -19585 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 161.5-16 chr11 33457605 33457836 + 1 NA intron (NM_012194, intron 1 of 20) L2c|LINE|L2 81612 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 115.5-45 chr2 74263689 74263875 + 1 NA intron (NM_133478, intron 10 of 30) MER5B|DNA|hAT-Charlie 51243 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 142.25-55 chr5 84407650 84407815 + 1 NA Intergenic Intergenic -22852 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 449.25 chr7 127093385 127093978 + 1 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) -35497 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 156.5-64 chr5 121093550 121093981 + 1 NA Intergenic Intergenic -228785 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 179.5-71 chr4 118938721 118939045 + 1 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) 50029 NM_133477 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 158.5-7 chr1 155829356 155829647 + 1 NA intron (NM_032292, intron 2 of 20) AluSx1|SINE|Alu 27713 NM_001282858 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 165.75-31 chr19 30890140 30890499 + 1 NA Intergenic MLT1O|LTR|ERVL-MaLR -277191 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 119.25-93 chr8 25696328 25696574 + 1 NA Intergenic Charlie1|DNA|hAT-Charlie 237218 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 128.25-36 chr2 183569035 183569180 + 1 NA Intergenic Intergenic 444664 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 212.5-50 chr7 30558019 30558289 + 1 NA intron (NR_038889, intron 5 of 6) L1M7|LINE|L1 19625 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 135.75-62 chr3 16938441 16938623 + 1 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 5336 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 279.25-16 chr21 28884097 28884511 + 1 NA intron (NM_013240, intron 1 of 5) intron (NM_013240, intron 1 of 5) 1063 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 157.5-73 chr3 191089049 191089234 + 1 NA Intergenic Intergenic -110100 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 178.75-11 chr15 47587964 47588208 + 1 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -129419 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 146.5-26 chr14 62754207 62754396 + 1 NA intron (NM_172375, intron 9 of 9) L1MA2|LINE|L1 291157 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 160.5-78 chr8 136572776 136573047 + 1 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 42113 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 206.25-22 chr3 102931882 102932115 + 1 NA Intergenic Intergenic 496983 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 210.5-12 chr11 130616251 130616585 + 1 NA Intergenic Tigger7|DNA|TcMar-Tigger -50317 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 164.5-101 chr9 72157475 72157835 + 1 NA intron (NM_001351571, intron 1 of 13) intron (NM_001351571, intron 1 of 13) 8215 NM_001351573 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 186.25-5 chr1 213527501 213527772 + 1 NA Intergenic Intergenic -397113 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 211.5-28 chr2 175180279 175180661 + 1 NA intron (NM_001002258, intron 1 of 3) intron (NM_001002258, intron 1 of 3) 1240 NM_001190329 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 182.75-7 chr13 58691352 58691647 + 1 NA Intergenic AluSq|SINE|Alu -458382 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 155.5-98 chr9 32717053 32717219 + 1 NA Intergenic Intergenic -66404 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 203.25-32 chr3 59642910 59643162 + 1 NA intron (NR_149028, intron 1 of 3) L1MB2|LINE|L1 15461 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 136.5-48 chr18 806022 806176 + 1 NA intron (NM_005433, intron 1 of 11) intron (NM_005433, intron 1 of 11) 6143 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 125.25-76 chr6 72345828 72346127 + 1 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -20769 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 134.75-28 chr18 41484934 41485178 + 1 NA intron (NR_002838, intron 3 of 5) intron (NR_002838, intron 3 of 5) 35621 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 249.5-20 chr4 77799036 77799486 + 1 NA intron (NM_001365006, intron 1 of 11) AluJr|SINE|Alu 19803 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 198.75-8 chr12 40577612 40578208 + 1 NA Intergenic Intergenic -114529 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 132.5-122 chrX 50520574 50520723 + 1 NA Intergenic Intergenic -49823 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 339.75-10 chr2 73217821 73218313 + 1 NA intron (NM_006062, intron 1 of 12) MER5A1|DNA|hAT-Charlie 3822 NM_006062 10322 Hs.631882 NM_006062 ENSG00000135632 SMYD5 NN8-4AG|RAI15|RRG1|ZMYND23 SMYD family member 5 protein-coding 148.75-40 chr20 2903925 2904153 + 1 NA intron (NM_080840, intron 1 of 22) AluJr|SINE|Alu -19168 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 179.5-11 chr1 246572055 246572273 + 1 NA intron (NM_001139459, intron 1 of 8) AluJb|SINE|Alu 5708 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 203.5-51 chr8 137187062 137187381 + 1 NA Intergenic Intergenic 226367 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 160.5-12 chr11 129796703 129797039 + 1 NA Intergenic Intergenic -18910 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 159.75-23 chr15 75149596 75149921 + 1 NA Intergenic MER41-int|LTR|ERV1 -52124 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 228.5-7 chr12 33843385 33843773 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -178917 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 153.75-27 chr14 70145223 70145446 + 1 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -41774 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 164.5-72 chr5 130377100 130377420 + 1 NA Intergenic AluSq2|SINE|Alu 472795 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 162.5-32 chr17 61925496 61925684 + 1 NA intron (NM_001351695, intron 2 of 24) AluSx4|SINE|Alu 2392 NM_020748 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 128.5-47 chr20 10353774 10353983 + 1 NA Intergenic LTR101_Mam|LTR|ERVL 78047 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 147.25-57 chr6 80425228 80425441 + 1 NA Intergenic Intergenic 318663 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 157.25-47 chr22 50033113 50033317 + 1 NA exon (NM_001350317, exon 11 of 14) exon (NM_001350317, exon 11 of 14) -20450 NM_001371416 145.5-41 chr18 74736555 74736763 + 1 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 105696 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 210.5-18 chr14 48176555 48176847 + 1 NA Intergenic L1MC4|LINE|L1 -381687 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 164.25-57 chr8 88809510 88809878 + 1 NA Intergenic Intergenic -482211 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 418.5-3 chr12 16136812 16137372 + 1 NA Intergenic Intergenic 140593 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 164.75-20 chr12 53965351 53965538 + 1 NA intron (NR_003716, intron 4 of 5) intron (NR_003716, intron 4 of 5) 3312 NR_003716 100124700 Hs.197076 NR_003716 ENSG00000228630 HOTAIR HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 HOX transcript antisense RNA ncRNA 211.5-49 chr6 141077071 141077452 + 1 NA Intergenic L1PB1|LINE|L1 393447 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 206.5-15 chr14 23806832 23807077 + 1 NA Intergenic L1ME3G|LINE|L1 -146816 NM_021004 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 193.5-11 chr11 42268259 42268559 + 1 NA Intergenic Intergenic -14719 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 125.5-126 chr8 137328097 137328283 + 1 NA Intergenic MIR|SINE|MIR 85398 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 182.5-70 chr8 122492869 122493073 + 1 NA intron (NR_131202, intron 2 of 3) L1PA14|LINE|L1 75673 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 198.25-21 chr2 59156988 59157360 + 1 NA Intergenic Intergenic -60534 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 170.25-71 chr9 86524818 86525138 + 1 NA Intergenic Intergenic -170568 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 287.75 chr11 59327839 59328330 + 1 NA Intergenic L1MA7|LINE|L1 -36375 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 136.5-43 chr16 59714958 59715117 + 1 NA Intergenic Intergenic 40154 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 206.75-26 chr5 96230544 96231009 + 1 NA intron (NR_130776, intron 1 of 4) L1MB7|LINE|L1 151638 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 136.5-12 chr10 56346630 56346833 + 1 NA Intergenic Intergenic 14528 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 135.75-58 chr20 35750454 35750726 + 1 NA Intergenic Mam_R4|LINE|Dong-R4 -8254 NR_136587 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 194.75-45 chr8 14437917 14438254 + 1 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 415425 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 127.5-26 chr12 40828037 40828261 + 1 NA 5' UTR (NM_001256064, exon 1 of 16) 5' UTR (NM_001256064, exon 1 of 16) 211 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 173.25-40 chr3 6418075 6418444 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR 387190 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 132.5-21 chr12 130033223 130033387 + 1 NA TTS (NR_024457) TTS (NR_024457) 9037 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 133.25-51 chr20 20013716 20013897 + 1 NA Intergenic AluSx3|SINE|Alu -3484 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 231.5-23 chr2 141803760 141804167 + 1 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 327738 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 152.75-55 chr5 148674355 148674541 + 1 NA Intergenic Intergenic -19921 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 209.75-18 chr18 80144870 80145196 + 1 NA Intergenic Intergenic -2891 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 238.25-9 chr18 61838390 61838892 + 1 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 54366 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 182.75-10 chr14 66538073 66538363 + 1 NA intron (NM_001024218, intron 1 of 21) L1ME3|LINE|L1 30811 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 137.5-27 chr13 70117570 70117762 + 1 NA intron (NR_002717, intron 2 of 4) MIRb|SINE|MIR -9173 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 133.75-16 chr11 120769355 120769537 + 1 NA intron (NM_001282470, intron 2 of 19) MER58B|DNA|hAT-Charlie 49669 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 279.5-3 chr12 6870032 6870427 + 1 NA TTS (NM_032641) TTS (NM_032641) 2115 NM_001258026 7167 Hs.524219 NM_000365 ENSG00000111669 TPI1 HEL-S-49|TIM|TPI|TPID triosephosphate isomerase 1 protein-coding 163.5-43 chr2 219939251 219939624 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -32872 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 169.5-50 chr3 21344012 21344240 + 1 NA Intergenic LTR16A|LTR|ERVL -61600 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 125.25-16 chr12 1436994 1437141 + 1 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -63424 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 158.25-29 chr22 45717736 45717954 + 1 NA intron (NM_013236, intron 5 of 11) intron (NM_013236, intron 5 of 11) -42679 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 165.75-52 chr5 8626602 8626970 + 1 NA Intergenic Intergenic 165861 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 294.75-17 chr9 28645293 28645684 + 1 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 73817 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 171.5-36 chr19 14769140 14769433 + 1 NA intron (NM_013447, intron 5 of 20) intron (NM_013447, intron 5 of 20) 7641 NM_001271052 30817 Hs.531619 NM_013447 ENSG00000127507 ADGRE2 CD312|CD97|EMR2|VBU adhesion G protein-coupled receptor E2 protein-coding 181.5-73 chr8 76401129 76401429 + 1 NA Intergenic Intergenic -5375 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 124.5-48 chr19 42634216 42634377 + 1 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -39372 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 150.5-74 chr5 89452627 89452919 + 1 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -548668 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 261.5-14 chr18 62796570 62797048 + 1 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 81268 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 196.5-42 chr2 60246087 60246408 + 1 NA Intergenic MER91C|DNA|hAT-Tip100 136789 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 140.5-69 chr4 7885723 7885966 + 1 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) -13536 NM_001371090 304.25-2 chr1 83659389 83660041 + 1 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 200831 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 285.5-2 chr10 68788462 68788754 + 1 NA intron (NR_104262, intron 22 of 23) AluSz|SINE|Alu 33436 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 137.5-75 chr3 31612678 31612894 + 1 NA intron (NM_178862, intron 5 of 15) intron (NM_178862, intron 5 of 15) 79861 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 138.5-6 chr1 112228005 112228207 + 1 NA Intergenic FLAM_C|SINE|Alu -168108 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 142.5-32 chr16 1192213 1192410 + 1 NA intron (NM_001005407, intron 2 of 33) intron (NM_001005407, intron 2 of 33) 32957 NM_012467 25823 Hs.592076 NM_012467 ENSG00000116176 TPSG1 PRSS31|TMT|trpA tryptase gamma 1 protein-coding 179.5-31 chr14 25011584 25011801 + 1 NA intron (NM_001304476, intron 1 of 6) intron (NM_001304476, intron 1 of 6) 37308 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 186.5-44 chr4 36708246 36708782 + 1 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -66614 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 233.5-41 chr4 71959741 71960117 + 1 NA Intergenic L1MEi|LINE|L1 -71875 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 152.5-58 chr20 8371599 8371827 + 1 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 123009 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 154.25-50 chr4 28579147 28579366 + 1 NA Intergenic Intergenic -240326 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 268.5-33 chrX 23031975 23032313 + 1 NA intron (NR_073010, intron 3 of 11) L1MEf|LINE|L1 32184 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 161.5-75 chr5 137414954 137415178 + 1 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 84260 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 152.5-38 chr15 80422781 80423077 + 1 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 18547 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 159.5-4 chr1 90238768 90239005 + 1 NA Intergenic L1MEf|LINE|L1 243776 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 134.25-79 chr6 129381235 129381411 + 1 NA intron (NM_000426, intron 34 of 64) intron (NM_000426, intron 34 of 64) 328854 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 267.5-6 chr13 102562904 102563265 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -33902 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 114.25-63 chr2 138191281 138191524 + 1 NA Intergenic Intergenic 89518 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 148.5-14 chr11 86580394 86580562 + 1 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 91720 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 268.75-13 chr18 68511998 68512391 + 1 NA Intergenic L1M8|LINE|L1 202914 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 163.5-72 chr5 105976719 105977016 + 1 NA Intergenic Intergenic 877393 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 123.5-32 chr14 31752894 31753069 + 1 NA intron (NM_001201574, intron 1 of 5) THE1D|LTR|ERVL-MaLR 38412 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 177.5-68 chr9 104260196 104260644 + 1 NA Intergenic Intergenic -9809 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 182.5-37 chr21 27659212 27659623 + 1 NA Intergenic Intergenic -62962 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 173.75-35 chr4 92735006 92735262 + 1 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 430735 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 197.75-43 chr6 131176325 131176705 + 1 NA intron (NM_016377, intron 5 of 7) intron (NM_016377, intron 5 of 7) 41048 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 176.25-44 chr3 72661801 72662139 + 1 NA Intergenic Intergenic 2279 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 162.5-2 chr1 41909347 41909586 + 1 NA intron (NR_038261, intron 2 of 3) L1ME3E|LINE|L1 9456 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 271.75-8 chr4 55345309 55345748 + 1 NA promoter-TSS (NM_024592) promoter-TSS (NM_024592) -714 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 169.75-66 chr9 26340931 26341136 + 1 NA Intergenic Intergenic 274358 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 180.25-39 chr3 63505025 63505310 + 1 NA intron (NM_001130003, intron 3 of 5) MIRb|SINE|MIR 44884 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 152.5-84 chr4 87216263 87216487 + 1 NA intron (NM_001292006, intron 1 of 9) intron (NM_001292006, intron 1 of 9) 3893 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 186.5-35 chr2 184476134 184476500 + 1 NA Intergenic Intergenic 97342 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 195.5-37 chr19 15931122 15931420 + 1 NA intron (NM_021187, intron 1 of 11) intron (NM_021187, intron 1 of 11) 3595 NM_021187 57834 Hs.187393 NM_021187 ENSG00000171903 CYP4F11 CYPIVF11 cytochrome P450 family 4 subfamily F member 11 protein-coding 195.5-22 chr13 67475540 67475808 + 1 NA Intergenic L3|LINE|CR1 103287 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 293.75 chr1 84987861 84988196 + 1 NA intron (NM_001330647, intron 1 of 14) L1PB1|LINE|L1 9085 NM_153259 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 128.5-61 chr3 94295762 94295926 + 1 NA Intergenic PRIMA4-int|LTR|ERV1 232783 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 125.25-77 chr6 145805531 145805674 + 1 NA exon (NM_032145, exon 2 of 3) exon (NM_032145, exon 2 of 3) 9193 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 239.5-13 chr19 13486543 13486876 + 1 NA intron (NM_023035, intron 1 of 46) (TC)n|Simple_repeat|Simple_repeat 19751 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 271.5-11 chr2 9235203 9235484 + 1 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 28531 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 208.5-68 chr7 51341783 51342051 + 1 NA Intergenic L2|LINE|L2 -25056 NM_001287436 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 146.5-11 chr10 73644201 73644535 + 1 NA TTS (NM_024875) TTS (NM_024875) -2894 NM_021245 58529 Hs.238756 NM_021245 ENSG00000177791 MYOZ1 CS-2|FATZ|MYOZ myozenin 1 protein-coding 115.75-27 chr15 87335991 87336149 + 1 NA Intergenic L1MC3|LINE|L1 -240859 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 136.5 chr1 9723226 9723426 + 1 NA intron (NM_005026, intron 20 of 23) intron (NM_005026, intron 20 of 23) 31859 NM_001350235 5293 Hs.518451 NM_005026 ENSG00000171608 PIK3CD APDS|IMD14|P110DELTA|PI3K|p110D phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta protein-coding 140.5-74 chr4 58289686 58289837 + 1 NA Intergenic Intergenic 246567 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 161.25-72 chr6 113278153 113278343 + 1 NA Intergenic L3|LINE|CR1 155199 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 123.75-67 chr3 41821585 41821755 + 1 NA intron (NR_136342, intron 17 of 34) L2|LINE|L2 140433 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 120.25-65 chr7 26434426 26434804 + 1 NA intron (NR_148500, intron 2 of 5) MLT1H|LTR|ERVL-MaLR -35197 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 118.5-16 chr10 13086355 13086553 + 1 NA intron (NM_001282658, intron 3 of 6) intron (NM_001282658, intron 3 of 6) 13535 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 275.25-10 chr17 27292287 27292720 + 1 NA Intergenic AluSx3|SINE|Alu 1493 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 147.75-90 chrX 36195325 36195508 + 1 NA intron (NM_001304548, intron 42 of 63) intron (NM_001304548, intron 42 of 63) 244876 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 221.75-12 chr2 65047672 65048059 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -8551 NM_001319101 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 141.5-13 chr10 50881419 50881690 + 1 NA intron (NM_001198818, intron 1 of 13) intron (NM_001198818, intron 1 of 13) 4073 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 189.25-25 chr2 76026636 76026905 + 1 NA Intergenic L1PA16|LINE|L1 -315855 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 152.25-46 chr4 178106982 178107216 + 1 NA Intergenic L1MA4|LINE|L1 -199163 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 227.75-17 chr3 134852817 134853084 + 1 NA intron (NM_004441, intron 1 of 15) MIR3|SINE|MIR 57690 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 178.25-58 chr7 51873200 51873465 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie -480076 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 156.5-48 chr3 161834694 161834938 + 1 NA Intergenic Intergenic 338008 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 171.25-11 chr12 21373533 21373899 + 1 NA intron (NM_001329201, intron 2 of 2) intron (NM_001329201, intron 2 of 2) 814 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 189.5-50 chr5 87197906 87198217 + 1 NA intron (NR_105018, intron 2 of 3) MamGypsy2-I|LTR|Gypsy 41140 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 162.75-13 chr12 41013723 41014111 + 1 NA intron (NM_001843, intron 17 of 23) intron (NM_001843, intron 17 of 23) 105560 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 232.5-55 chr9 122451421 122451716 + 1 NA Intergenic Intergenic 26358 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 124.5-107 chr8 107172277 107172500 + 1 NA Intergenic Intergenic 164127 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 187.25-17 chr11 109872180 109872600 + 1 NA Intergenic L1MA6|LINE|L1 -221002 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 169.75-2 chr1 76675450 76675823 + 1 NA Intergenic Intergenic 103631 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 113.5-116 chr8 51730215 51730372 + 1 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 79152 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 120.75-101 chr8 138947191 138947408 + 1 NA Intergenic L1MEf|LINE|L1 -33258 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 141.5-88 chr5 18341741 18341989 + 1 NA Intergenic Intergenic 534591 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 224.25-2 chr1 45282081 45282563 + 1 NA Intergenic Intergenic -21588 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 139.5-55 chr22 30768838 30769038 + 1 NA intron (NM_001282740, intron 1 of 12) intron (NM_001282740, intron 1 of 12) 4685 NM_001282740 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 270.25-11 chr4 36092679 36093153 + 1 NA intron (NR_146894, intron 27 of 32) intron (NR_146894, intron 27 of 32) 151023 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 208.25-35 chr6 34242860 34243167 + 1 NA intron (NM_002131, intron 4 of 5) intron (NM_002131, intron 4 of 5) 2340 NR_106893 102465502 NR_106893 ENSG00000276404 MIR6835 hsa-mir-6835 microRNA 6835 ncRNA 243.5-11 chr2 24252803 24253073 + 1 NA intron (NM_001348182, intron 23 of 38) intron (NM_001348182, intron 23 of 38) 77885 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 235.5-9 chr10 14240930 14241331 + 1 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 89754 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 160.5-9 chr11 79404352 79404558 + 1 NA intron (NM_001098816, intron 1 of 33) L1MB5|LINE|L1 -2346 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 276.75-10 chr17 43738822 43739362 + 1 NA Intergenic AluJb|SINE|Alu 19699 NM_025237 50964 Hs.349204 NM_025237 ENSG00000167941 SOST CDD|DAND6|SOST1|VBCH sclerostin protein-coding 149.5-112 chr9 27746378 27746590 + 1 NA Intergenic Intergenic -172618 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 140.5-65 chr3 120517288 120517660 + 1 NA Intergenic LTR16A|LTR|ERVL -66482 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 139.25-57 chr3 55121504 55121669 + 1 NA Intergenic Intergenic -56586 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 294.5-3 chr1 147174622 147175031 + 1 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) 2079 NM_001348451 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 139.25-34 chr15 67133162 67133421 + 1 NA intron (NM_001145102, intron 1 of 8) intron (NM_001145102, intron 1 of 8) -4730 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 134.75-56 chr5 68590989 68591218 + 1 NA Intergenic Charlie25|DNA|hAT-Charlie 298526 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 128.5-11 chr11 73105597 73105820 + 1 NA intron (NM_014824, intron 2 of 19) intron (NM_014824, intron 2 of 19) 36610 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 155.75-24 chr2 9127891 9128084 + 1 NA Intergenic AluSx3|SINE|Alu -78778 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 189.75-5 chr10 57969815 57970062 + 1 NA Intergenic Intergenic 297956 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 145.5-99 chr9 35607310 35607455 + 1 NA promoter-TSS (NR_039813) promoter-TSS (NR_039813) -712 NR_039813 100616214 NR_039813 ENSG00000263892 MIR4667 mir-4667 microRNA 4667 ncRNA 160.5-8 chr10 111971160 111971460 + 1 NA Intergenic L2c|LINE|L2 212455 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 146.25-58 chr5 39392044 39392240 + 1 NA intron (NM_001343, intron 4 of 14) intron (NM_001343, intron 4 of 14) -27647 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 140.5-37 chr19 33159668 33159866 + 1 NA intron (NR_135565, intron 7 of 11) MER1A|DNA|hAT-Charlie 27653 NR_135565 126248 Hs.211046 NM_173479 ENSG00000166359 WDR88 PQWD WD repeat domain 88 protein-coding 239.5-35 chr9 118793244 118793583 + 1 NA Intergenic Intergenic 113742 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 302.5-15 chr5 110480485 110480918 + 1 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 33214 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 241.25-15 chr5 3968648 3968937 + 1 NA Intergenic L1M4a1|LINE|L1 372960 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 132.5-110 chr8 40368068 40368282 + 1 NA Intergenic L1MB5|LINE|L1 -24812 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 123.5-79 chr4 94395853 94396080 + 1 NA Intergenic Intergenic -53130 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 237.5-7 chr10 77313521 77313870 + 1 NA intron (NM_001322838, intron 1 of 29) L2c|LINE|L2 37066 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 141.5-11 chr1 241490886 241491114 + 1 NA Intergenic Tigger17c|DNA|TcMar-Tigger 28785 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 195.75-49 chr5 168201693 168201973 + 1 NA intron (NM_001368145, intron 16 of 26) L1MC5|LINE|L1 30539 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 257.25-21 chr8 85480872 85481397 + 1 NA 3' UTR (NM_001293675, exon 6 of 6) 3' UTR (NM_001293675, exon 6 of 6) -16219 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 201.5-58 chr7 92631584 92631892 + 1 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -41348 NM_152789 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 154.5-60 chr5 18826954 18827217 + 1 NA Intergenic Intergenic 1019811 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 149.25-68 chr9 68734191 68734390 + 1 NA intron (NM_001278253, intron 1 of 13) intron (NM_001278253, intron 1 of 13) 28876 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 158.5-27 chr12 12105280 12105465 + 1 NA Intergenic L1MEf|LINE|L1 -6580 NR_036262 100422885 NR_036262 ENSG00000283498 MIR1244-2 - microRNA 1244-2 ncRNA 186.25-42 chr5 35048858 35049169 + 1 NA non-coding (NR_037910, exon 8 of 8) non-coding (NR_037910, exon 8 of 8) -1064 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 132.5-6 chr1 220593409 220593649 + 1 NA intron (NM_018650, intron 3 of 17) intron (NM_018650, intron 3 of 17) 65346 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 179.5-13 chr10 7984149 7984427 + 1 NA intron (NM_031923, intron 4 of 6) intron (NM_031923, intron 4 of 6) 68203 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 212.25-44 chr9 135234429 135234684 + 1 NA Intergenic L1MEc|LINE|L1 52947 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 173.5-49 chr2 136187288 136187539 + 1 NA Intergenic Intergenic -69258 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 234.25-6 chr12 50851662 50852164 + 1 NA intron (NM_182559, intron 2 of 4) L1PA15|LINE|L1 8987 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 118.5-42 chr16 51667611 51667752 + 1 NA Intergenic MIRb|SINE|MIR -94838 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 203.5-21 chr2 110762227 110762714 + 1 NA intron (NM_001371254, intron 1 of 18) L1ME2z|LINE|L1 29897 NM_001365487 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 229.25-19 chr3 101834821 101835245 + 1 NA intron (NM_001005474, intron 2 of 12) intron (NM_001005474, intron 2 of 12) 7043 NM_001005474 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 170.5-73 chr6 91699724 91699989 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -9428 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 128.75-6 chr10 51572357 51572602 + 1 NA intron (NM_001098512, intron 3 of 17) MIR3|SINE|MIR 127116 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 204.25-28 chr2 76475491 76475739 + 1 NA Intergenic MER51-int|LTR|ERV1 -510350 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 148.5-103 chr7 78869051 78869335 + 1 NA intron (NM_001301128, intron 2 of 20) L1PB|LINE|L1 -139795 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 189.5-15 chr14 30868447 30868765 + 1 NA Intergenic AluJb|SINE|Alu -5929 NM_001347720 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 122.75-81 chr8 117836584 117836769 + 1 NA intron (NM_000127, intron 2 of 10) intron (NM_000127, intron 2 of 10) 84237 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 165.5-29 chr14 48070779 48071034 + 1 NA Intergenic Intergenic -275892 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 156.5-47 chr3 78930334 78930639 + 1 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 88973 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 126.5-58 chr2 225342313 225342458 + 1 NA Intergenic L1MC4|LINE|L1 -57325 NM_001371273 133.75-54 chr3 22338431 22338641 + 1 NA Intergenic Intergenic 381397 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 164.75-14 chr11 69573875 69574202 + 1 NA Intergenic Intergenic -67067 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 154.5-72 chr8 74001015 74001192 + 1 NA intron (NM_001195797, intron 1 of 3) L1M3d|LINE|L1 9711 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 152.5-50 chr19 44473548 44473755 + 1 NA TTS (NM_001288762) TTS (NM_001288762) -25073 NM_001278510 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 237.5-23 chr20 52958942 52959270 + 1 NA Intergenic Intergenic -13252 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 186.5-39 chr20 59600541 59600902 + 1 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) -3819 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 217.75 chr1 14850865 14851164 + 1 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -73115 NM_001370229 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 294.75-11 chr3 20773324 20773713 + 1 NA Intergenic Intergenic 431050 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 207.5-64 chr9 94994372 94994651 + 1 NA intron (NM_032823, intron 9 of 14) MIR|SINE|MIR -48957 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 131.5-54 chr22 20088385 20088652 + 1 NA intron (NM_022720, intron 3 of 13) intron (NM_022720, intron 3 of 13) 2460 NR_031706 100302197 NR_031706 ENSG00000284464 MIR1306 MIRN1306|hsa-mir-1306|mir-1306 microRNA 1306 ncRNA 128.5-25 chr14 76852018 76852250 + 1 NA intron (NM_194287, intron 7 of 13) L1ME4c|LINE|L1 25726 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 129.5-57 chr3 2342418 2342673 + 1 NA intron (NM_175607, intron 3 of 24) THE1C|LTR|ERVL-MaLR 103716 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 288.25-10 chr2 205401284 205401693 + 1 NA intron (NM_205863, intron 19 of 21) intron (NM_205863, intron 19 of 21) -281012 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 216.5-42 chr8 121473666 121473982 + 1 NA Intergenic Intergenic -165522 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 230.5-38 chr4 62441716 62442143 + 1 NA Intergenic Intergenic -280164 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 150.25-80 chr9 13338123 13338453 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -58575 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 129.75-7 chr1 222797283 222797521 + 1 NA Intergenic L2b|LINE|L2 -17637 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 140.75-20 chr15 50190667 50190975 + 1 NA intron (NM_001159629, intron 1 of 8) intron (NM_001159629, intron 1 of 8) 8625 NM_001159629 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 121.25-59 chr5 111252542 111252772 + 1 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 28273 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 132.75-52 chr2 14711798 14711930 + 1 NA Intergenic Intergenic 79147 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 143.75-63 chr4 44769635 44769865 + 1 NA Intergenic Intergenic -43116 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 144.25-83 chrX 68161368 68161549 + 1 NA intron (NM_002547, intron 15 of 24) L1ME3E|LINE|L1 272037 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 196.25-23 chr16 34571877 34572261 + 1 NA Intergenic (GAATG)n|Satellite|Satellite -190589 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 145.5-27 chr13 93279461 93279669 + 1 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 52758 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 181.5-61 chr6 116715302 116715568 + 1 NA intron (NM_001366310, intron 7 of 8) intron (NM_001366310, intron 7 of 8) 34224 NM_001366306 3841 Hs.182971 NM_002269 ENSG00000196911 KPNA5 IPOA6|SRP6 karyopherin subunit alpha 5 protein-coding 204.5-2 chr1 97850941 97851234 + 1 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 54166 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 114.75-70 chr4 42551838 42552111 + 1 NA intron (NM_001105529, intron 16 of 35) intron (NM_001105529, intron 16 of 35) 105131 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 130.5-56 chr21 29013591 29013884 + 1 NA intron (NM_001320724, intron 1 of 5) intron (NM_001320724, intron 1 of 5) 5612 NM_016940 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 212.25-23 chr20 10670120 10670545 + 1 NA intron (NM_000214, intron 2 of 25) intron (NM_000214, intron 2 of 25) 3667 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 198.25-25 chr20 2950348 2950824 + 1 NA intron (NM_080840, intron 3 of 22) AluY|SINE|Alu 27379 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 203.75-11 chr14 87247931 87248343 + 1 NA Intergenic L1MC5|LINE|L1 342359 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 188.5-27 chr2 98824620 98824912 + 1 NA intron (NM_207362, intron 6 of 9) intron (NM_207362, intron 6 of 9) -52868 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 116.5-22 chr11 108370130 108370324 + 1 NA intron (NR_147053, intron 10 of 12) L1M5|LINE|L1 97302 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 154.75-64 chr8 120929819 120930111 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -117919 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 129.25-46 chr2 194429055 194429245 + 1 NA Intergenic MSTD-int|LTR|ERVL-MaLR 84881 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 150.25-68 chr7 31671196 31671373 + 1 NA Intergenic LTR1D1|LTR|ERV1 -15733 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 237.5-36 chr6 46494899 46495167 + 1 NA intron (NR_125837, intron 1 of 2) AluSx4|SINE|Alu -2966 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 152.75-46 chr3 182799981 182800192 + 1 NA intron (NM_014616, intron 1 of 29) AluJr|SINE|Alu 6582 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 177.25-19 chr2 12794353 12794566 + 1 NA Intergenic Tigger13a|DNA|TcMar-Tigger 57092 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 297.75-17 chr5 40410397 40410829 + 1 NA Intergenic Intergenic -269302 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 115.25-6 chr1 102542591 102542717 + 1 NA Intergenic Intergenic -545420 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 241.5-8 chr12 41696899 41697340 + 1 NA Intergenic Intergenic -67070 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 199.5-34 chr3 96780995 96781322 + 1 NA Intergenic AluSg|SINE|Alu -33436 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 152.5-87 chr5 122304953 122305218 + 1 NA Intergenic MamSINE1|SINE|tRNA-RTE -6606 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 148.5-118 chrUn_KI270438v1 90267 90492 + 1 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 138.5-12 chr1 235823430 235823690 + 1 NA intron (NM_000081, intron 3 of 52) L2b|LINE|L2 29500 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 201.5-60 chr7 133954300 133954668 + 1 NA intron (NM_021807, intron 14 of 17) Charlie7|DNA|hAT-Charlie -129596 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 189.5-51 chr5 127012729 127012998 + 1 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 17695 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 146.75-31 chr3 172250101 172250406 + 1 NA intron (NM_001135095, intron 5 of 25) intron (NM_001135095, intron 5 of 25) 198203 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 228.5-20 chr2 161446413 161446676 + 1 NA Intergenic Intergenic 30247 NM_006593 10716 Hs.210862 NM_006593 ENSG00000136535 TBR1 IDDAS|TBR-1|TES-56 T-box brain transcription factor 1 protein-coding 200.5-49 chr4 94414712 94414954 + 1 NA Intergenic L1P4|LINE|L1 -37024 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 218.5-55 chr8 124613410 124613823 + 1 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 74493 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 161.5-20 chr11 60034536 60034832 + 1 NA Intergenic Intergenic -5725 NM_173801 219990 Hs.132310 NM_173801 ENSG00000149507 OOSP2 OOSP2A|PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 195.5-36 chr19 14881558 14881920 + 1 NA promoter-TSS (NM_030901) promoter-TSS (NM_030901) -384 NM_030901 26333 Hs.247717 NM_030901 ENSG00000185385 OR7A17 BC85395_4|HTPCRX19 olfactory receptor family 7 subfamily A member 17 protein-coding 228.25-25 chr3 64165105 64165613 + 1 NA intron (NM_001370528, intron 2 of 7) intron (NM_001370528, intron 2 of 7) -22185 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 143.5-87 chr5 167529270 167529426 + 1 NA intron (NM_001122679, intron 3 of 29) MIR3|SINE|MIR -44311 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 147.75-20 chr14 46087209 46087583 + 1 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 23237 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 189.5-21 chr17 65458561 65459036 + 1 NA TTS (NR_131984) TTS (NR_131984) 1257 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 183.5-3 chr1 65985043 65985250 + 1 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) -7470 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 159.75-9 chr10 116326319 116326660 + 1 NA intron (NM_198515, intron 3 of 8) intron (NM_198515, intron 3 of 8) 2041 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 218.5-13 chr12 68160340 68160742 + 1 NA promoter-TSS (NM_000619) promoter-TSS (NM_000619) -801 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 172.25-62 chr5 29310892 29311171 + 1 NA Intergenic Intergenic 84945 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 121.25-32 chr2 31607071 31607307 + 1 NA Intergenic L1ME2|LINE|L1 -26251 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 131.25-54 chr21 19157625 19157791 + 1 NA Intergenic L1PA15-16|LINE|L1 -397896 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 150.5-3 chr1 157510129 157510337 + 1 NA Intergenic Intergenic 42282 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 175.5-67 chr6 100836851 100837107 + 1 NA intron (NM_006828, intron 4 of 41) L1MA6|LINE|L1 44350 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 180.5-79 chr7 7844629 7844922 + 1 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) 123977 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 193.75-40 chr6 132675451 132675991 + 1 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -29695 NM_138327 134864 Hs.375030 NM_138327 ENSG00000146399 TAAR1 TA1|TAR1|TRAR1 trace amine associated receptor 1 protein-coding 191.5-65 chr8 50601266 50601524 + 1 NA intron (NR_135797, intron 15 of 20) L1M1|LINE|L1 437264 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 120.75-38 chr17 40478298 40478522 + 1 NA intron (NM_032865, intron 11 of 12) intron (NM_032865, intron 11 of 12) 23213 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 239.75-15 chr2 9153378 9153714 + 1 NA Intergenic Intergenic -53219 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 183.5 chr1 11238652 11238872 + 1 NA intron (NM_004958, intron 11 of 57) intron (NM_004958, intron 11 of 57) 23789 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 371.75-4 chr8 60668940 60669618 + 1 NA Intergenic Intergenic -9461 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 162.25-34 chr5 22746799 22747164 + 1 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 106363 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 150.25-27 chr14 81957984 81958194 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -214951 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 208.25-47 chr9 18272610 18272994 + 1 NA Intergenic L2c|LINE|L2 -201351 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 141.75-43 chr2 125041725 125042094 + 1 NA Intergenic Intergenic 1016622 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 130.75-7 chr1 161950256 161950490 + 1 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 74092 NM_001347700 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 239.5-4 chr10 90886637 90887045 + 1 NA intron (NM_006413, intron 6 of 10) intron (NM_006413, intron 6 of 10) 14867 NM_001104546 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 123.5-13 chr10 90220619 90220805 + 1 NA Intergenic Intergenic -263339 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 195.5-87 chr8 102174246 102174530 + 1 NA Intergenic MSTA-int|LTR|ERVL-MaLR 48956 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 158.75-8 chr10 74014658 74014863 + 1 NA intron (NM_014000, intron 1 of 21) AluJb|SINE|Alu 16644 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 120.75-93 chr7 136043159 136043368 + 1 NA Intergenic Intergenic -65904 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 139.5-63 chr3 136899462 136899643 + 1 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) -30950 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 120.5-117 chrY 11295701 11295885 + 1 NA Intergenic Intergenic 1125797 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 148.5-50 chr2 173017022 173017294 + 1 NA intron (NM_001282901, intron 13 of 24) intron (NM_001282901, intron 13 of 24) -58688 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 123.75-53 chr2 51637911 51638300 + 1 NA intron (NR_135237, intron 5 of 10) L1ME5|LINE|L1 605504 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 116.75-30 chr16 78439750 78440048 + 1 NA intron (NM_001291997, intron 7 of 7) MLT1L|LTR|ERVL-MaLR 340245 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 126.25-31 chr15 86000342 86000591 + 1 NA Intergenic MER21C|LTR|ERVL -79154 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 332.5-5 chr11 44492331 44492726 + 1 NA Intergenic Intergenic -73135 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 267.75-10 chr3 158806037 158806330 + 1 NA intron (NM_022736, intron 3 of 15) L3|LINE|CR1 4129 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 150.5-66 chr4 62890294 62890482 + 1 NA Intergenic L1PA8|LINE|L1 -728623 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 173.25-69 chr9 6843488 6843802 + 1 NA intron (NR_148680, intron 4 of 21) intron (NR_148680, intron 4 of 21) 86295 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 176.25-28 chr16 79718807 79719036 + 1 NA Intergenic AluYj4|SINE|Alu -51550 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 131.5-86 chr7 36996692 36996823 + 1 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -1039 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 113.25-106 chr7 80592877 80593014 + 1 NA Intergenic MLT1E3|LTR|ERVL-MaLR -9262 NM_001371074 187.25-15 chr11 31927977 31928272 + 1 NA Intergenic Intergenic 101557 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 236.5-12 chr12 60936094 60936401 + 1 NA Intergenic L1PA15-16|LINE|L1 1246877 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 158.5-72 chr3 121505234 121505524 + 1 NA intron (NM_199420, intron 12 of 29) intron (NM_199420, intron 12 of 29) 40609 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 275.75-25 chr9 36906201 36906604 + 1 NA intron (NR_103999, intron 6 of 8) MLT1D|LTR|ERVL-MaLR -12871 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 126.5-17 chr10 73346718 73346920 + 1 NA intron (NM_001350934, intron 3 of 25) intron (NM_001350934, intron 3 of 25) 11935 NM_001350933 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 158.25-59 chr6 56595444 56595842 + 1 NA intron (NM_001144770, intron 39 of 94) intron (NM_001144770, intron 39 of 94) 47246 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 235.5-4 chr1 110681909 110682245 + 1 NA Intergenic AluSz|SINE|Alu -7137 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 176.25-10 chr11 111871822 111872097 + 1 NA promoter-TSS (NM_001077692) promoter-TSS (NM_001077692) -378 NM_001352413 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 199.25-20 chr2 70280579 70280951 + 1 NA TTS (NM_001317171) TTS (NM_001317171) 12459 NM_001317167 6637 Hs.465167 NM_003096 ENSG00000143977 SNRPG SMG|Sm-G small nuclear ribonucleoprotein polypeptide G protein-coding 225.25-24 chr3 115191149 115191384 + 1 NA Intergenic MER4-int|LTR|ERV1 -43978 NM_001348803 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 140.5-33 chr16 82162006 82162190 + 1 NA intron (NM_005792, intron 2 of 4) MIR|SINE|MIR 8126 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 175.75-11 chr15 85742076 85742349 + 1 NA intron (NM_007200, intron 35 of 36) intron (NM_007200, intron 35 of 36) 16513 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 141.5-2 chr1 59646757 59647082 + 1 NA intron (NM_001350790, intron 12 of 16) intron (NM_001350790, intron 12 of 16) 86377 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 232.75-6 chr14 74100744 74101038 + 1 NA intron (NM_001024674, intron 4 of 5) AluJb|SINE|Alu 15938 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 213.25-3 chr1 196719075 196719450 + 1 NA intron (NM_000186, intron 11 of 21) intron (NM_000186, intron 11 of 21) -55538 NM_021023 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 276.25-6 chr17 61794575 61795154 + 1 NA intron (NM_032043, intron 9 of 19) L2a|LINE|L2 68695 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 262.25-9 chr18 981845 982264 + 1 NA Intergenic L2b|LINE|L2 -54061 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 133.25-71 chr7 4218710 4218930 + 1 NA intron (NM_001079653, intron 12 of 19) MER103C|DNA|hAT-Charlie -83983 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 165.5-85 chr7 98993925 98994268 + 1 NA intron (NM_003496, intron 64 of 70) intron (NM_003496, intron 64 of 70) -19069 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 176.5-85 chr8 115259248 115259561 + 1 NA Intergenic Intergenic 408609 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 311.25-9 chr5 128136555 128136897 + 1 NA intron (NM_001046, intron 7 of 26) L2b|LINE|L2 52960 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 141.25-15 chr11 69563132 69563331 + 1 NA Intergenic Intergenic 77670 NR_120542 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 120.25-53 chr4 72104649 72104902 + 1 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 65643 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 162.25-24 chr2 120167068 120167278 + 1 NA intron (NM_001330310, intron 22 of 24) intron (NM_001330310, intron 22 of 24) 56227 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 139.5-14 chr11 81761848 81762106 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie 128859 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 222.25-13 chr17 79217451 79217727 + 1 NA intron (NM_001350453, intron 3 of 13) L2b|LINE|L2 142652 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 171.5-46 chr2 133830992 133831306 + 1 NA Intergenic Intergenic -262686 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 249.25-20 chr5 74413246 74413799 + 1 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 91036 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 155.75-46 chr4 112247812 112248062 + 1 NA intron (NM_018569, intron 1 of 9) L1MC5a|LINE|L1 16150 NM_018569 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 216.5-6 chr11 19269871 19270195 + 1 NA Intergenic Intergenic -28378 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 184.5-55 chr4 48090611 48090884 + 1 NA intron (NM_003328, intron 8 of 14) L2a|LINE|L2 43503 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 157.75-6 chr1 35447404 35447749 + 1 NA intron (NM_024874, intron 16 of 20) AluJo|SINE|Alu -81499 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 157.75-21 chr12 12845907 12846163 + 1 NA Intergenic Intergenic -29442 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 115.25-71 chr4 91192195 91192369 + 1 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 957251 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 146.5-58 chr3 28780001 28780254 + 1 NA Intergenic Intergenic 204849 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 251.25-21 chr3 65912898 65913181 + 1 NA intron (NR_145422, intron 1 of 2) AluSz|SINE|Alu 19223 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 207.25-32 chr8 87746590 87747126 + 1 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat 127157 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 133.5-19 chr11 82667721 82667904 + 1 NA Intergenic L1MEd|LINE|L1 66052 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 205.5-34 chr22 28397842 28398142 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -61877 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 148.75-6 chr10 110406955 110407152 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -90854 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 167.5-64 chr5 44246300 44246521 + 1 NA Intergenic Intergenic -142322 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 113.75-91 chr5 153802966 153803079 + 1 NA intron (NM_000827, intron 15 of 15) L3|LINE|CR1 95965 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 212.5-14 chr14 65306391 65306773 + 1 NA Intergenic Charlie4a|DNA|hAT-Charlie 28601 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 119.5-71 chr21 37855632 37855767 + 1 NA intron (NM_002240, intron 1 of 3) intron (NM_002240, intron 1 of 3) 60758 NM_002240 3763 Hs.626242 NM_002240 ENSG00000157542 KCNJ6 BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2 potassium voltage-gated channel subfamily J member 6 protein-coding 123.5-75 chr4 67748226 67748470 + 1 NA intron (NM_000406, intron 1 of 2) MIR|SINE|MIR 7738 NM_001012763 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 159.5-29 chr15 88527114 88527427 + 1 NA intron (NR_026645, intron 3 of 4) HAL1|LINE|L1 19105 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 205.5-63 chr9 5555581 5555873 + 1 NA intron (NM_025239, intron 4 of 6) MLT1J2|LTR|ERVL-MaLR 45196 NM_025239 80380 Hs.532279 NM_025239 ENSG00000197646 PDCD1LG2 B7DC|Btdc|CD273|PD-L2|PDCD1L2|PDL2|bA574F11.2 programmed cell death 1 ligand 2 protein-coding 194.5-31 chr2 33603776 33604101 + 1 NA Intergenic Intergenic -4576 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 162.25 chr1 50989819 50990074 + 1 NA Intergenic Intergenic 19701 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 157.5-26 chr14 45404499 45404941 + 1 NA Intergenic Intergenic -151518 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 224.5-42 chr9 130982626 130982987 + 1 NA Intergenic Intergenic -26368 NM_006059 10319 Hs.201805 NM_006059 ENSG00000050555 LAMC3 OCCM laminin subunit gamma 3 protein-coding 138.5-90 chr6 16037459 16037608 + 1 NA Intergenic Intergenic -91553 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 130.5-78 chr6 52882662 52883027 + 1 NA Intergenic Intergenic 26854 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 137.5-46 chr18 7878247 7878460 + 1 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 311037 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 144.75-72 chr6 2905186 2905476 + 1 NA Intergenic AluSx|SINE|Alu -2022 NM_004155 5272 Hs.104879 NM_004155 ENSG00000170542 SERPINB9 CAP-3|CAP3|PI-9|PI9 serpin family B member 9 protein-coding 149.5-61 chr2 205004291 205004479 + 1 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 458910 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 199.5-45 chr5 148792662 148793068 + 1 NA Intergenic L3|LINE|CR1 -33728 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 209.75-8 chr13 51685327 51685788 + 1 NA intron (NM_052950, intron 3 of 11) Tigger2a|DNA|TcMar-Tigger 101095 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 145.5-2 chr1 58310170 58310516 + 1 NA Intergenic Intergenic -59796 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 196.5-12 chr1 221088345 221088597 + 1 NA Intergenic MIRb|SINE|MIR -208331 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 154.25-7 chr1 246322810 246323212 + 1 NA intron (NM_022743, intron 5 of 11) L2|LINE|L2 94401 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 183.5-50 chr3 80437755 80438109 + 1 NA Intergenic Intergenic -326965 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 300.75-12 chr5 51648166 51648624 + 1 NA Intergenic Intergenic 264947 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 210.75-9 chr14 31392607 31392964 + 1 NA intron (NM_015473, intron 6 of 35) L2|LINE|L2 27765 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 360.5-9 chr5 111271220 111271866 + 1 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 47159 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 172.25-27 chr17 53817531 53817814 + 1 NA Intergenic L2b|LINE|L2 -5255 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 193.25-33 chr5 14277248 14277589 + 1 NA intron (NM_007118, intron 2 of 56) intron (NM_007118, intron 2 of 56) 134076 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 117.75-67 chr5 79403211 79403414 + 1 NA intron (NM_004272, intron 5 of 8) intron (NM_004272, intron 5 of 8) 110524 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 214.75-16 chr2 41617845 41618335 + 1 NA Intergenic Intergenic -259465 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 154.5-4 chr1 111499530 111499745 + 1 NA 3' UTR (NM_000677, exon 2 of 2) 3' UTR (NM_000677, exon 2 of 2) 3996 NM_020683 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 207.5-39 chr3 43656974 43657211 + 1 NA intron (NM_001346469, intron 1 of 11) intron (NM_001346469, intron 1 of 11) -33778 NR_158560 51099 Hs.19385 NM_016006 ENSG00000011198 ABHD5 CGI58|IECN2|NCIE2 abhydrolase domain containing 5 protein-coding 192.5-42 chr3 90128015 90128472 + 1 NA Intergenic Tigger3|DNA|TcMar-Tigger 1020622 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 149.25-25 chr14 58415735 58415963 + 1 NA intron (NM_001304487, intron 1 of 3) L1MDa|LINE|L1 11393 NM_001304486 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 231.5-37 chr5 37580820 37581266 + 1 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 201725 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 154.5-40 chr2 46801177 46801346 + 1 NA Intergenic L2a|LINE|L2 -15407 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 138.75-13 chr12 54330586 54330840 + 1 NA intron (NM_001271734, intron 1 of 7) intron (NM_001271734, intron 1 of 7) 5582 NM_016057 22818 Hs.505652 NM_016057 ENSG00000111481 COPZ1 CGI-120|COPZ|HSPC181|zeta-COP|zeta1-COP coatomer protein complex subunit zeta 1 protein-coding 133.5-4 chr1 62050158 62050376 + 1 NA intron (NM_001350145, intron 30 of 43) MLT1L|LTR|ERVL-MaLR -28519 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 120.5-100 chr7 48070606 48070739 + 1 NA Intergenic Charlie1b|DNA|hAT-Charlie -17931 NM_001362774 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 127.75-47 chr2 155994599 155994762 + 1 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 260251 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 127.75-56 chr3 124618385 124618597 + 1 NA intron (NM_007064, intron 1 of 26) intron (NM_007064, intron 1 of 26) 33832 NM_001323000 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 261.5-18 chr3 71503701 71504279 + 1 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 38099 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 187.75-48 chr7 40253638 40253986 + 1 NA intron (NM_001193312, intron 7 of 12) AluSx1|SINE|Alu 118836 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 168.25-10 chr11 36931660 36931994 + 1 NA Intergenic Intergenic -333548 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 194.5-12 chr11 40896702 40896925 + 1 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 562823 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 122.5-48 chr2 83212038 83212220 + 1 NA Intergenic Intergenic -310685 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 164.75-41 chr3 67227928 67228190 + 1 NA Intergenic LTR32|LTR|ERVL 2595 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 154.5-34 chr16 78141657 78141880 + 1 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 42114 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 343.75-7 chr3 138771750 138772390 + 1 NA intron (NM_006219, intron 2 of 23) intron (NM_006219, intron 2 of 23) 62858 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 125.75-31 chr18 7238887 7239203 + 1 NA Intergenic Intergenic 7941 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 218.25-35 chr4 88998591 88998855 + 1 NA intron (NM_014883, intron 3 of 23) intron (NM_014883, intron 3 of 23) 58462 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 201.5-22 chr17 65318282 65318654 + 1 NA Intergenic (TATATCTA)n|Simple_repeat|Simple_repeat -139073 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 157.5-15 chr12 4120997 4121300 + 1 NA Intergenic MIRb|SINE|MIR -152614 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 155.5-74 chr3 183270745 183271093 + 1 NA exon (NM_032047, exon 2 of 2) exon (NM_032047, exon 2 of 2) 17666 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 125.5-54 chr16 48561099 48561325 + 1 NA exon (NM_153029, exon 2 of 7) exon (NM_153029, exon 2 of 7) 48968 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 198.75-4 chr10 75861322 75861520 + 1 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 78660 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 208.75-31 chr9 27854043 27854337 + 1 NA Intergenic L1MEj|LINE|L1 -280324 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 305.75-8 chr2 145365724 145366094 + 1 NA Intergenic Intergenic 697942 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 187.5-22 chr14 64551739 64552064 + 1 NA intron (NM_172365, intron 2 of 11) L2|LINE|L2 1940 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 187.25-34 chr20 41605303 41605552 + 1 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 12950 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 232.25-12 chr19 55832683 55832991 + 1 NA promoter-TSS (NM_001297743) promoter-TSS (NM_001297743) -743 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 187.75-38 chr4 53523652 53523957 + 1 NA TTS (NR_046622) TTS (NR_046622) 23727 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 232.5 chr1 97719920 97720152 + 1 NA 3' UTR (NM_001160301, exon 6 of 6) 3' UTR (NM_001160301, exon 6 of 6) -76885 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 215.25-37 chr7 49756867 49757205 + 1 NA Intergenic L1ME2|LINE|L1 -16602 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 125.25-9 chr10 84971627 84971921 + 1 NA Intergenic L1M5|LINE|L1 227131 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 230.25-11 chr18 14913149 14913502 + 1 NA Intergenic Intergenic -32942 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 177.5-6 chr10 17684459 17684790 + 1 NA intron (NM_001324285, intron 3 of 14) intron (NM_001324285, intron 3 of 14) 40473 NM_001324284 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 217.75-6 chr11 56563271 56563640 + 1 NA Intergenic L1P4|LINE|L1 14266 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 148.5-47 chr2 125015479 125015660 + 1 NA Intergenic Intergenic 990282 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 166.75-34 chr2 115861146 115861401 + 1 NA Intergenic L1M4|LINE|L1 517458 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 222.75-7 chr11 28597551 28597785 + 1 NA Intergenic L3|LINE|CR1 -120120 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 184.5-12 chr11 41800263 41800511 + 1 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 85819 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 140.5-76 chr4 80563984 80564182 + 1 NA intron (NM_152770, intron 2 of 5) L1M1|LINE|L1 228363 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 210.5-19 chr14 70844818 70845143 + 1 NA Intergenic Intergenic -35467 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 213.5-48 chr8 9874057 9874478 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 29062 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 117.5-33 chr16 73438693 73438899 + 1 NA Intergenic Intergenic 51991 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 150.75-26 chr18 13496700 13496876 + 1 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 36841 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 198.75-37 chr5 68774191 68774520 + 1 NA Intergenic Intergenic 255572 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 281.25-5 chr14 71404379 71404835 + 1 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) 6270 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 207.5-2 chr1 54683471 54683814 + 1 NA intron (NM_001039464, intron 14 of 23) L2b|LINE|L2 -32180 NM_001291333 7268 Hs.412482 NM_004623 ENSG00000243725 TTC4 CNS1 tetratricopeptide repeat domain 4 protein-coding 205.5-57 chr8 52676989 52677231 + 1 NA intron (NM_001083617, intron 5 of 23) intron (NM_001083617, intron 5 of 23) 37325 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 178.5-12 chr14 37422798 37423124 + 1 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 172288 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 226.5-44 chr6 4074416 4074789 + 1 NA exon (NM_173563, exon 3 of 7) exon (NM_173563, exon 3 of 7) 4535 NM_173563 222826 Hs.657342 NM_173563 ENSG00000145975 FAM217A C6orf146 family with sequence similarity 217 member A protein-coding 132.25-75 chr5 92105583 92105757 + 1 NA Intergenic Intergenic -722353 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 167.5-89 chr8 140176875 140177082 + 1 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -76443 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 162.75-4 chr1 167907457 167907771 + 1 NA intron (NM_018417, intron 1 of 32) MLT1I|LTR|ERVL-MaLR 6520 NM_001297772 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 119.75-15 chr10 114160987 114161204 + 1 NA TTS (NM_153249) TTS (NM_153249) 13084 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 185.75-52 chr5 180619672 180620005 + 1 NA intron (NM_002020, intron 17 of 29) CpG-22961 -28339 NM_052863 92304 Hs.62492 NM_052863 ENSG00000161055 SCGB3A1 HIN-1|HIN1|LU105|PnSP-2|UGRP2 secretoglobin family 3A member 1 protein-coding 277.5-19 chr6 63290634 63291179 + 1 NA intron (NM_001143940, intron 2 of 4) MER102c|DNA|hAT-Charlie 29071 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 172.5-92 chr9 97293680 97293876 + 1 NA intron (NR_036526, intron 13 of 15) intron (NR_036526, intron 13 of 15) -13559 NM_001348010 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 201.75-12 chr16 59737480 59737839 + 1 NA Intergenic Intergenic 17532 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 208.5-12 chr11 84250100 84250382 + 1 NA intron (NM_001142700, intron 1 of 19) MER102a|DNA|hAT-Charlie 23039 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 161.5-45 chr18 66637559 66637799 + 1 NA Intergenic Intergenic -33589 NR_073130 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 149.75-28 chr2 115026146 115026468 + 1 NA intron (NM_001321910, intron 2 of 26) L1MA4|LINE|L1 -38266 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 134.75-39 chr2 220597117 220597335 + 1 NA Intergenic L1MD|LINE|L1 -690661 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 145.25-26 chr14 59732579 59732830 + 1 NA intron (NM_021136, intron 2 of 8) L1PA11|LINE|L1 -85684 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 202.75-24 chr5 117769810 117770134 + 1 NA intron (NR_104997, intron 1 of 2) L1PBa|LINE|L1 39611 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 134.25-94 chr8 65536647 65536871 + 1 NA intron (NR_033893, intron 1 of 4) AluSx1|SINE|Alu 25907 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 214.25-8 chr10 77284328 77284667 + 1 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 66264 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 147.25-46 chr4 56052128 56052467 + 1 NA Intergenic MER112|DNA|hAT-Charlie 103352 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 151.25-5 chr10 32880688 32880986 + 1 NA intron (NM_001321115, intron 43 of 43) L1PA10|LINE|L1 20635 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 174.25-63 chr9 124153493 124153865 + 1 NA Intergenic AluYj4|SINE|Alu -103927 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 132.5-24 chr14 49680816 49681049 + 1 NA intron (NM_001348385, intron 2 of 18) intron (NM_001348385, intron 2 of 18) 7282 NM_001197331 5427 Hs.162777 NM_002692 ENSG00000100479 POLE2 DPE2 DNA polymerase epsilon 2, accessory subunit protein-coding 129.5-17 chr11 76285671 76285919 + 1 NA Intergenic L2b|LINE|L2 -79293 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 144.5-96 chr6 45503202 45503540 + 1 NA intron (NM_001015051, intron 6 of 7) intron (NM_001015051, intron 6 of 7) 81096 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 172.25-24 chr15 58433067 58433414 + 1 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) 1249 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 141.5-46 chr17 70002203 70002441 + 1 NA Intergenic L1ME1|LINE|L1 40615 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 130.5-5 chr1 102811031 102811186 + 1 NA Intergenic LTR26|LTR|ERV1 297388 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 205.75-35 chr5 146483988 146484388 + 1 NA intron (NM_006706, intron 14 of 21) intron (NM_006706, intron 14 of 21) 31925 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 115.75-28 chr16 1670863 1671056 + 1 NA intron (NM_020825, intron 19 of 19) intron (NM_020825, intron 19 of 19) -7320 NM_144570 90861 Hs.513261 NM_144570 ENSG00000206053 JPT2 C16orf34|HN1L|L11 Jupiter microtubule associated homolog 2 protein-coding 129.5-50 chr2 156210230 156210420 + 1 NA intron (NR_110250, intron 1 of 3) L1PREC2|LINE|L1 44606 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 142.75-76 chr6 80397266 80397515 + 1 NA Intergenic Intergenic 290719 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 176.25-25 chr16 13138240 13138538 + 1 NA intron (NM_001145204, intron 2 of 4) L2c|LINE|L2 236791 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 253.75-25 chrX 53249167 53249623 + 1 NA intron (NM_001111125, intron 5 of 14) intron (NM_001111125, intron 5 of 14) -23973 NM_001353984 8242 Hs.631768 NM_004187 ENSG00000126012 KDM5C DXS1272E|JARID1C|MRX13|MRXJ|MRXSCJ|MRXSJ|SMCX|XE169 lysine demethylase 5C protein-coding 241.5-18 chr2 173207710 173208022 + 1 NA intron (NR_033882, intron 6 of 7) intron (NR_033882, intron 6 of 7) 74170 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 167.5-8 chr10 74728220 74728437 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR -96927 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 157.75-39 chr2 22251957 22252149 + 1 NA Intergenic Intergenic -284426 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 237.75-30 chr21 18689253 18689665 + 1 NA intron (NR_109925, intron 2 of 3) ERVL-B4-int|LTR|ERVL -3295 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 228.5-39 chr9 85498550 85498949 + 1 NA Intergenic L1M4c|LINE|L1 243280 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 256.5-28 chr4 46986530 46986841 + 1 NA intron (NM_001204267, intron 2 of 7) L2a|LINE|L2 6896 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 176.5-71 chr4 189293672 189293969 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -365786 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 138.75-20 chr14 70135761 70136025 + 1 NA intron (NM_033262, intron 2 of 7) L1MA4|LINE|L1 -51215 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 138.5-80 chr4 91408097 91408446 + 1 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 869031 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 190.75-50 chr7 15648656 15648868 + 1 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -19185 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 153.5-84 chr6 63448464 63448746 + 1 NA Intergenic Intergenic -123407 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 214.25-7 chr10 55028635 55028897 + 1 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -227475 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 156.75-65 chr4 26502831 26503018 + 1 NA Intergenic Intergenic -12440 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 213.75-19 chr14 81812396 81812647 + 1 NA Intergenic Intergenic -69383 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 213.5-10 chr12 29984123 29984384 + 1 NA Intergenic Intergenic -199494 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 133.5-20 chr11 84612834 84613067 + 1 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 107992 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 175.5-15 chr11 35381777 35381989 + 1 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 37675 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 134.25-60 chr4 41035341 41035565 + 1 NA intron (NM_001330658, intron 3 of 15) intron (NM_001330658, intron 3 of 15) -178261 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 170.25-40 chr20 38566509 38566920 + 1 NA intron (NM_001282917, intron 25 of 29) intron (NM_001282917, intron 25 of 29) -14483 NR_130907 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 258.25-4 chr14 81316130 81316606 + 1 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -94978 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 147.5-33 chr16 46496265 46496530 + 1 NA intron (NR_026556, intron 12 of 16) L1MB8|LINE|L1 72700 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 205.5-15 chr14 79252401 79252870 + 1 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -26745 NM_001272020 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 129.75-37 chr19 35964073 35964285 + 1 NA TTS (NR_136525) TTS (NR_136525) 17064 NR_136525 105372383 Hs.641592 NR_136525 LOC105372383 - uncharacterized LOC105372383 ncRNA 165.5-92 chr9 9277059 9277283 + 1 NA intron (NM_002839, intron 9 of 45) L2a|LINE|L2 419153 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 152.25-70 chr8 120694910 120695261 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -66168 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 193.75-24 chr2 124519376 124519706 + 1 NA intron (NM_130773, intron 8 of 23) MIRb|SINE|MIR 494254 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 112.75-57 chr22 30211156 30211292 + 1 NA Intergenic L1MB3|LINE|L1 -27970 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 171.5-85 chr7 28108725 28109034 + 1 NA intron (NM_175061, intron 1 of 4) L1MA9|LINE|L1 -71578 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 142.5-36 chr17 68470854 68471018 + 1 NA intron (NM_001278433, intron 1 of 10) intron (NM_001278433, intron 1 of 10) -13412 NR_135470 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 166.75-43 chr3 128147180 128147377 + 1 NA intron (NM_001319086, intron 1 of 9) AluJb|SINE|Alu -6203 NM_021937 60678 Hs.477498 NM_021937 ENSG00000132394 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA specific protein-coding 132.5-89 chr5 34500566 34500927 + 1 NA Intergenic Intergenic -155582 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 117.5 chr1 26765859 26766034 + 1 NA intron (NM_139135, intron 8 of 19) AluJo|SINE|Alu -22017 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 114.25-60 chr2 115221989 115222151 + 1 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 59915 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 174.75-6 chr10 16731203 16731517 + 1 NA intron (NM_152724, intron 6 of 7) AluYk3|SINE|Alu 86064 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 117.25 chr1 26971738 26971939 + 1 NA Intergenic Intergenic -11370 NM_152365 126695 Hs.188881 NM_152365 ENSG00000175707 KDF1 C1orf172|ECTD12 keratinocyte differentiation factor 1 protein-coding 225.25-3 chr10 18751868 18752200 + 1 NA Intergenic L2c|LINE|L2 92603 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 215.5-35 chr4 164002005 164002323 + 1 NA intron (NM_001166373, intron 2 of 7) L1MEc|LINE|L1 195547 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 222.5-20 chr16 89009352 89009787 + 1 NA Intergenic Intergenic -32362 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 137.25-44 chr2 177531653 177531815 + 1 NA intron (NM_003659, intron 19 of 19) L1MD1|LINE|L1 21062 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 120.75-94 chr8 78204987 78205208 + 1 NA Intergenic L2a|LINE|L2 -311243 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 161.25-45 chr2 125144785 125144987 + 1 NA Intergenic L1MEg|LINE|L1 973099 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 130.5-57 chr22 27560192 27560433 + 1 NA Intergenic Intergenic 241444 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 121.75-92 chr8 125129137 125129316 + 1 NA intron (NM_001349486, intron 3 of 7) L2|LINE|L2 37366 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 132.25-11 chr10 91245007 91245150 + 1 NA intron (NM_001256549, intron 3 of 9) L2-1_AMi|LINE|L2 24415 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 170.5-57 chr5 14908813 14909071 + 1 NA Intergenic MER47B|DNA|TcMar-Tigger -37164 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 251.25-6 chr12 5295758 5296129 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -52792 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 127.75-67 chr4 110701521 110701755 + 1 NA Intergenic L1MCc|LINE|L1 -59515 NM_001204399 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 260.25 chr10 72703647 72704063 + 1 NA intron (NM_001270680, intron 1 of 7) AluSz6|SINE|Alu 11236 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 114.25-25 chr12 20758846 20759010 + 1 NA Intergenic Intergenic -51777 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 121.25-14 chr12 412616 412799 + 1 NA intron (NM_001130148, intron 2 of 10) intron (NM_001130148, intron 2 of 10) 11063 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 128.25-72 chr6 131880083 131880390 + 1 NA intron (NM_006208, intron 20 of 24) MIR3|SINE|MIR 71136 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 185.75-2 chr1 78744676 78744911 + 1 NA Intergenic Intergenic 94962 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 146.75 chr1 37044161 37044521 + 1 NA Intergenic L2c|LINE|L2 -9826 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 194.75-17 chr17 32897568 32897913 + 1 NA Intergenic Intergenic -20616 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 151.5-22 chr12 8954521 8954702 + 1 NA intron (NR_137427, intron 1 of 2) L1MC4|LINE|L1 4567 NR_137427 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 153.25-28 chr2 133668629 133668878 + 1 NA Intergenic L1MB7|LINE|L1 -100290 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 208.5-30 chr17 64513111 64513483 + 1 NA intron (NM_138363, intron 3 of 19) intron (NM_138363, intron 3 of 19) 6320 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 184.75-20 chr14 27686739 27686947 + 1 NA Intergenic Intergenic -13622 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 216.5-39 chr7 38101250 38101649 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -76796 NM_001363344 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 204.25-43 chr5 167781652 167781856 + 1 NA intron (NM_001080428, intron 1 of 24) AluJb|SINE|Alu 26825 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 162.5-43 chr2 160667458 160667637 + 1 NA Intergenic Intergenic -173740 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 209.5-22 chr20 56427913 56428277 + 1 NA intron (NM_001164116, intron 2 of 6) intron (NM_001164116, intron 2 of 6) 15835 NM_020356 57091 Hs.473144 NM_020356 ENSG00000087589 CASS4 C20orf32|CAS4|HEFL|HEPL Cas scaffold protein family member 4 protein-coding 219.5-9 chr11 82071186 82071563 + 1 NA intron (NR_120571, intron 5 of 7) L1M4|LINE|L1 -180538 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 210.75-37 chr7 112006609 112006947 + 1 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 198273 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 190.5-2 chr1 18566761 18567025 + 1 NA Intergenic Intergenic -63953 NM_013945 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 126.25-8 chr1 233032738 233032948 + 1 NA intron (NM_014801, intron 25 of 33) intron (NM_014801, intron 25 of 33) 82001 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 292.5-3 chr13 58007583 58008041 + 1 NA Intergenic Intergenic -158015 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 152.25-19 chr14 52481913 52482094 + 1 NA intron (NM_001160047, intron 14 of 20) intron (NM_001160047, intron 14 of 20) 70502 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 195.5-5 chr1 110538926 110539359 + 1 NA Intergenic Intergenic -19967 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 126.75-77 chr5 105704734 105705027 + 1 NA Intergenic L1MA7|LINE|L1 605406 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 193.75-39 chr5 107138931 107139289 + 1 NA Intergenic Intergenic -128096 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 215.5-21 chr17 51997048 51997468 + 1 NA intron (NM_001082533, intron 3 of 9) L2c|LINE|L2 161456 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 145.5-45 chr2 66144863 66145158 + 1 NA Intergenic Intergenic 213318 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 249.5-26 chr7 18609220 18609536 + 1 NA intron (NM_001321893, intron 7 of 11) MER3|DNA|hAT-Charlie 100108 NM_001204148 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 178.5-75 chr7 50979364 50979592 + 1 NA Intergenic L1PA16|LINE|L1 -186025 NM_001371008 258.5-10 chr2 168075450 168075831 + 1 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) -134496 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 143.5-73 chr4 61049033 61049241 + 1 NA Intergenic LTR88c|LTR|Gypsy? -94519 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 142.25-6 chr1 215612876 215613131 + 1 NA intron (NM_001319294, intron 15 of 17) L1PA11|LINE|L1 45699 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 127.25-102 chr9 132558181 132558353 + 1 NA intron (NM_207417, intron 6 of 6) L1MB7|LINE|L1 -24339 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 194.75-11 chr12 40274682 40274990 + 1 NA intron (NM_198578, intron 15 of 50) intron (NM_198578, intron 15 of 50) 49839 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 155.25-33 chr2 44316224 44316648 + 1 NA intron (NM_000341, intron 9 of 9) HAL1ME|LINE|L1 40956 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 195.5-18 chr12 18462235 18462451 + 1 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 200803 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 211.25-42 chrX 66921459 66921793 + 1 NA Intergenic L1PA2|LINE|L1 -282328 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 132.25-29 chr13 54033004 54033246 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR 99746 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 198.25-34 chr4 94239782 94240146 + 1 NA intron (NM_001128429, intron 5 of 23) intron (NM_001128429, intron 5 of 23) -13345 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 171.5-18 chr12 82187217 82187509 + 1 NA Intergenic Intergenic 171024 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 184.5-51 chr3 68548333 68548570 + 1 NA Intergenic Intergenic 47814 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 200.5-21 chr15 58547881 58548186 + 1 NA intron (NM_000236, intron 5 of 8) intron (NM_000236, intron 5 of 8) -49298 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 242.25-22 chr4 96001965 96002312 + 1 NA Intergenic Intergenic 162045 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 165.25-45 chr5 29761288 29761648 + 1 NA Intergenic Intergenic -119092 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 138.5-43 chr16 82783384 82783564 + 1 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 10155 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 232.5-52 chr9 25014750 25015061 + 1 NA Intergenic L1MC3|LINE|L1 -469008 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 165.75-74 chr8 115944615 115944908 + 1 NA Intergenic Intergenic -275786 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 177.5-24 chr17 60313448 60313751 + 1 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 78534 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 169.25-32 chr20 38367825 38368227 + 1 NA intron (NM_004139, intron 9 of 14) AluJr4|SINE|Alu 21544 NM_004139 3929 Hs.154078 NM_004139 ENSG00000129988 LBP BPIFD2 lipopolysaccharide binding protein protein-coding 168.75-11 chr14 87708715 87709103 + 1 NA Intergenic L1ME3G|LINE|L1 -53615 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 122.75-32 chr17 69617969 69618206 + 1 NA intron (NR_109972, intron 2 of 4) L1PA3|LINE|L1 24100 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 178.25-36 chr3 114084667 114084880 + 1 NA intron (NM_024638, intron 9 of 9) MIR|SINE|MIR 28036 NM_001256837 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 168.75-64 chr9 118089289 118089684 + 1 NA Intergenic Intergenic 385083 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 155.5-97 chr9 20862258 20862502 + 1 NA intron (NM_017794, intron 17 of 45) intron (NM_017794, intron 17 of 45) 75453 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 148.5-27 chr14 58184225 58184441 + 1 NA Intergenic L2c|LINE|L2 -15816 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 151.5-20 chr11 130576172 130576365 + 1 NA Intergenic Intergenic -90467 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 159.25-12 chr11 84907262 84907488 + 1 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 16046 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 126.25-96 chr9 36857397 36857697 + 1 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) 6761 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 163.5-36 chr18 37212219 37212424 + 1 NA intron (NR_136303, intron 10 of 13) intron (NR_136303, intron 10 of 13) -62139 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 155.5-49 chr18 77719593 77719755 + 1 NA Intergenic Intergenic 274053 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 222.5-32 chr3 145205639 145205901 + 1 NA Intergenic Intergenic 863415 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 181.75-34 chr5 85114464 85114890 + 1 NA Intergenic Intergenic -729797 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 192.75-8 chr12 52671514 52671727 + 1 NA Intergenic Intergenic 8787 NM_006121 3848 Hs.80828 NM_006121 ENSG00000167768 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 131.5-96 chr8 117999021 117999248 + 1 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -78221 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 131.75-77 chr8 23993075 23993346 + 1 NA Intergenic Intergenic -138404 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 131.5-49 chr2 224491450 224491660 + 1 NA intron (NM_001257197, intron 12 of 14) L1M5|LINE|L1 78400 NM_001257198 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 175.75-50 chr8 123734896 123735321 + 1 NA intron (NM_004306, intron 1 of 10) A-rich|Low_complexity|Low_complexity 2285 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 176.75-36 chr4 45571210 45571449 + 1 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 552725 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 146.75-34 chr4 44545822 44546091 + 1 NA Intergenic Intergenic -97147 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 233.5-43 chr5 95112571 95112950 + 1 NA intron (NM_024717, intron 1 of 22) MER104|DNA|TcMar-Tc2 -30894 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 119.5-29 chr12 50784256 50784552 + 1 NA intron (NM_005171, intron 2 of 6) L2a|LINE|L2 20303 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 177.75-49 chr6 53533503 53533759 + 1 NA intron (NM_001498, intron 1 of 15) intron (NM_001498, intron 1 of 15) 11470 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 114.25-96 chr7 53488758 53488999 + 1 NA Intergenic L1PB2|LINE|L1 323053 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 115.25-67 chr3 175197467 175197601 + 1 NA intron (NM_207015, intron 2 of 13) Tigger2|DNA|TcMar-Tigger 73562 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 130.75-16 chr12 113051036 113051331 + 1 NA Intergenic L1ME3F|LINE|L1 -6674 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 121.75-62 chr4 49147287 49147510 + 1 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 160756 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 221.25-3 chr10 132660165 132660473 + 1 NA intron (NM_005539, intron 4 of 15) HAL1|LINE|L1 -20956 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 414.5 chr10 31955099 31955783 + 1 NA Intergenic THE1D-int|LTR|ERVL-MaLR -26565 NM_001270695 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 163.75-30 chr2 109433371 109433598 + 1 NA intron (NM_001099289, intron 6 of 9) intron (NM_001099289, intron 6 of 9) -119859 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 261.5-19 chr3 158721914 158722420 + 1 NA intron (NM_206963, intron 1 of 5) intron (NM_206963, intron 1 of 5) 10290 NM_206963 5918 Hs.131269 NM_002888 ENSG00000118849 RARRES1 LXNL|PERG-1|TIG1 retinoic acid receptor responder 1 protein-coding 136.75-58 chr22 25201673 25201857 + 1 NA intron (NM_004076, intron 2 of 5) intron (NM_004076, intron 2 of 5) 1907 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 222.5-48 chr8 85426271 85426631 + 1 NA Intergenic AluSq2|SINE|Alu -12408 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 237.75-49 chrX 138886366 138886817 + 1 NA intron (NM_001139500, intron 2 of 6) MIRc|SINE|MIR -19036 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 232.5-21 chr2 154362587 154362877 + 1 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 94706 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 191.5-36 chr2 195707150 195707475 + 1 NA intron (NM_020342, intron 4 of 9) intron (NM_020342, intron 4 of 9) 50086 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 122.75-29 chr17 40021946 40022122 + 1 NA exon (NM_001330211, exon 24 of 27) exon (NM_001330211, exon 24 of 27) 4375 NR_106944 102466757 NR_106944 ENSG00000283721 MIR6884 hsa-mir-6884 microRNA 6884 ncRNA 179.25-32 chr3 191420963 191421267 + 1 NA Intergenic Intergenic -4409 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 126.5-97 chr5 151881947 151882137 + 1 NA intron (NM_000171, intron 3 of 8) MIR3|SINE|MIR 42809 NM_000171 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 211.75-4 chr10 53858289 53858589 + 1 NA intron (NM_001354411, intron 28 of 34) MER102c|DNA|hAT-Charlie -627791 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 122.5-78 chr5 136588507 136588739 + 1 NA Intergenic L1MA4|LINE|L1 -223147 NM_020389 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 213.5-42 chr6 119299273 119299527 + 1 NA intron (NM_005907, intron 4 of 12) intron (NM_005907, intron 4 of 12) 50361 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 127.5-38 chr14 74169179 74169379 + 1 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -70170 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 132.5-32 chr15 65041975 65042249 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -3275 NM_178859 123264 Hs.27018 NM_178859 ENSG00000186198 SLC51B OSTB|OSTBETA solute carrier family 51 beta subunit protein-coding 117.5-17 chr12 101611668 101611831 + 1 NA intron (NM_001254722, intron 1 of 27) intron (NM_001254722, intron 1 of 27) 16778 NM_002465 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 284.75 chr10 25253316 25253810 + 1 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -77287 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 113.25-3 chr1 78587811 78587990 + 1 NA Intergenic Intergenic -32548 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 163.25-6 chr10 8144393 8144576 + 1 NA Intergenic Intergenic 89796 NM_002051 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 161.5-10 chr10 32459825 32460240 + 1 NA intron (NR_109827, intron 4 of 8) intron (NR_109827, intron 4 of 8) 13892 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 196.5-36 chr17 58143910 58144135 + 1 NA Intergenic L1MB7|LINE|L1 -11132 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 198.75-27 chr3 5407710 5408084 + 1 NA Intergenic MER20|DNA|hAT-Charlie -157642 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 123.5-82 chr4 155003788 155004041 + 1 NA Intergenic Intergenic -204722 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 141.25-48 chr2 190541425 190541677 + 1 NA Intergenic L1MA4|LINE|L1 -6829 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 170.5-88 chr8 140620288 140620466 + 1 NA intron (NM_001164623, intron 1 of 17) L1MC4a|LINE|L1 15256 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 162.5-62 chr4 113779531 113779807 + 1 NA Intergenic MER53|DNA|hAT -17742 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 158.5-90 chr7 13709479 13709834 + 1 NA Intergenic Intergenic 276858 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 128.75-48 chr21 21947795 21947940 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR 150592 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 275.5-20 chr22 28605517 28605944 + 1 NA intron (NM_001145418, intron 2 of 22) L1ME3G|LINE|L1 74135 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 199.25-21 chr2 79201827 79202227 + 1 NA Intergenic MER4A|LTR|ERV1 -42274 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 252.25-8 chr16 27129182 27129746 + 1 NA Intergenic Intergenic 62537 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 236.5-48 chr8 112036680 112037168 + 1 NA Intergenic Intergenic -606569 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 185.75-12 chr11 28697826 28698102 + 1 NA Intergenic Intergenic -220416 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 248.5-24 chr5 75513286 75513576 + 1 NA intron (NM_001345921, intron 1 of 13) intron (NM_001345921, intron 1 of 13) -1450 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 203.25-39 chr4 116019928 116020150 + 1 NA Intergenic HERV3-int|LTR|ERV1 -279686 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 338.5-3 chr11 95330339 95330855 + 1 NA Intergenic Intergenic -98122 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 138.75-76 chr8 123009916 123010326 + 1 NA Intergenic L2b|LINE|L2 15651 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 135.75-31 chr14 67686672 67686858 + 1 NA intron (NM_001252650, intron 4 of 5) MER46C|DNA|TcMar-Tigger 8999 NM_016026 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 165.5-43 chr2 15548821 15549074 + 1 NA intron (NR_052013, intron 6 of 50) intron (NR_052013, intron 6 of 50) 12387 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 199.5-11 chr12 25927026 25927358 + 1 NA Intergenic Intergenic 30393 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 119.5-126 chr9 35998800 35999040 + 1 NA Intergenic L2a|LINE|L2 -37993 NM_021111 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 121.75-39 chr2 82261566 82261725 + 1 NA Intergenic MER4C|LTR|ERV1 -595158 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 137.75-84 chr8 24443223 24443439 + 1 NA intron (NM_003817, intron 2 of 21) LTR78|LTR|ERV1 2305 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 178.75-13 chr15 73418522 73418743 + 1 NA Intergenic L1M4|LINE|L1 -24532 NM_001348772 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 149.25-65 chr8 132681678 132681876 + 1 NA Intergenic Tigger19b|DNA|TcMar-Tigger -6232 NR_135911 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 123.5-87 chr5 56256332 56256458 + 1 NA Intergenic L1MCc|LINE|L1 -23065 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 242.75-5 chr11 111539570 111539890 + 1 NA promoter-TSS (NM_001318799) promoter-TSS (NM_001318799) -550 NM_001318799 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 146.5-69 chr4 106341964 106342363 + 1 NA intron (NM_001142416, intron 6 of 6) L1PA16|LINE|L1 25272 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 288.5-3 chr10 67378251 67378783 + 1 NA intron (NM_001127384, intron 5 of 17) L1MD3|LINE|L1 24893 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 150.75-59 chr5 152894039 152894288 + 1 NA intron (NR_109877, intron 2 of 4) L2b|LINE|L2 78186 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 161.25-78 chr8 113823755 113824159 + 1 NA Intergenic Intergenic -387018 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 171.5-9 chr10 83572182 83572404 + 1 NA Intergenic MIRb|SINE|MIR 104796 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 190.25-25 chr2 177891291 177891685 + 1 NA intron (NM_001077197, intron 5 of 20) intron (NM_001077197, intron 5 of 20) -2732 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 166.5-33 chr14 76018470 76018779 + 1 NA intron (NM_001102564, intron 2 of 8) L1M2|LINE|L1 32861 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 197.5-38 chr2 217538451 217538765 + 1 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 217985 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 229.5-31 chr20 20294860 20295267 + 1 NA intron (NM_015585, intron 24 of 26) intron (NM_015585, intron 24 of 26) -73041 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 170.25-57 chr7 5145723 5146062 + 1 NA Intergenic AluSx1|SINE|Alu -1346 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 162.25-38 chr5 106133982 106134313 + 1 NA Intergenic AluJb|SINE|Alu 876867 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 117.5-56 chr2 210025160 210025370 + 1 NA intron (NM_001307976, intron 11 of 13) intron (NM_001307976, intron 11 of 13) -4657 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 148.5-37 chr17 52867624 52867831 + 1 NA intron (NR_146899, intron 1 of 2) L1MA8|LINE|L1 5606 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 214.75-29 chr4 126948573 126948865 + 1 NA Intergenic Intergenic -684238 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 116.5-5 chr1 98544704 98544881 + 1 NA Intergenic MER113|DNA|hAT-Charlie -116929 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 212.25-22 chr2 156686756 156687015 + 1 NA Intergenic Intergenic 250506 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 208.5-25 chr15 65263820 65264164 + 1 NA intron (NM_001316944, intron 1 of 3) A-rich|Low_complexity|Low_complexity 21599 NR_145768 109617003 NR_145768 ENSG00000206903 SNORA24B - small nucleolar RNA, H/ACA box 24B snoRNA 136.5-35 chr14 61776987 61777243 + 1 NA intron (NM_003082, intron 5 of 9) intron (NM_003082, intron 5 of 9) 14695 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 203.25-49 chr7 71138062 71138361 + 1 NA intron (NM_022479, intron 1 of 10) AluJr|SINE|Alu 6067 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 180.25-43 chr3 107892970 107893243 + 1 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 9901 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 223.25-26 chr6 100033399 100033725 + 1 NA intron (NR_038384, intron 2 of 2) AluJb|SINE|Alu -39324 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 128.25-89 chr9 20302709 20302990 + 1 NA Intergenic L1ME4a|LINE|L1 108389 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 193.5-31 chr2 180327538 180327844 + 1 NA Intergenic Intergenic -320394 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 154.75-60 chr7 29541536 29541866 + 1 NA Intergenic L1MA2|LINE|L1 -22134 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 201.5-12 chr12 23316202 23316437 + 1 NA Intergenic Intergenic 140683 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 150.75-61 chr6 51539986 51540186 + 1 NA Intergenic L3|LINE|CR1 -81784 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 127.75-53 chr3 93973955 93974162 + 1 NA promoter-TSS (NM_001314077) promoter-TSS (NM_001314077) 23 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 164.5-4 chr1 219571638 219571928 + 1 NA Intergenic L1MC3|LINE|L1 -14459 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 139.75-46 chr2 179751276 179751615 + 1 NA intron (NM_001352809, intron 3 of 10) intron (NM_001352809, intron 3 of 10) -4935 NM_001113397 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 230.5-52 chr8 13581007 13581422 + 1 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) 14345 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 283.75-9 chr3 73138731 73139047 + 1 NA Intergenic Intergenic 77230 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 120.5-57 chr20 56871125 56871287 + 1 NA Intergenic L1ME4b|LINE|L1 241900 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 163.5-86 chr7 113899066 113899354 + 1 NA intron (NM_002711, intron 1 of 3) MER67B|LTR|ERV1 19799 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 156.5-58 chr5 22393519 22393774 + 1 NA intron (NM_001364104, intron 2 of 13) MLT1D-int|LTR|ERVL-MaLR -179796 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 167.5-83 chr7 121227800 121228082 + 1 NA intron (NM_001105533, intron 15 of 17) intron (NM_001105533, intron 15 of 17) -97426 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 202.5-30 chr3 88581820 88582175 + 1 NA Intergenic Intergenic 243541 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 200.5-3 chr1 110540393 110540662 + 1 NA Intergenic AluJr|SINE|Alu -21352 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 127.75-26 chr13 66489609 66489819 + 1 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 271464 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 227.5-20 chr16 63879563 63879870 + 1 NA Intergenic AluYj4|SINE|Alu 1242347 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 191.25-32 chr2 76009723 76010022 + 1 NA Intergenic Intergenic -298957 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 177.25-16 chr18 68057792 68058063 + 1 NA Intergenic Intergenic -243105 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 235.5-30 chr20 37300971 37301207 + 1 NA intron (NM_022077, intron 2 of 3) AluSx|SINE|Alu 11434 NM_001003897 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 116.75-25 chr14 64323596 64323727 + 1 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) 14889 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 151.25-27 chr17 59883669 59883971 + 1 NA intron (NM_016261, intron 3 of 8) AluJr|SINE|Alu 9123 NM_016261 51174 Hs.463638 NM_016261 ENSG00000108423 TUBD1 TUBD tubulin delta 1 protein-coding 158.75-52 chr4 114771609 114771851 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 114971 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 123.5-99 chr7 95683689 95683842 + 1 NA Intergenic L1ME4b|LINE|L1 -87249 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 130.5-46 chr2 57823357 57823548 + 1 NA Intergenic L1MC1|LINE|L1 -84199 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 193.5-20 chr14 61480306 61480626 + 1 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 89728 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 222.75-33 chr4 132864861 132865399 + 1 NA Intergenic AluSx|SINE|Alu 274041 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 220.5-42 chr6 143173135 143173452 + 1 NA intron (NM_001366354, intron 3 of 4) AluSz6|SINE|Alu 8511 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 338.5-2 chr10 82185607 82186172 + 1 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 47031 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 170.5-79 chr7 111197531 111197793 + 1 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 106535 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 126.25-17 chr11 44077231 44077389 + 1 NA exon (NM_001127219, exon 7 of 15) exon (NM_001127219, exon 7 of 15) 11040 NM_032592 84680 Hs.126706 NM_032592 ENSG00000110455 ACCS ACS|PHACS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) protein-coding 218.25-15 chr13 78294362 78294739 + 1 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 239695 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 116.5-131 chr9 126270430 126270650 + 1 NA non-coding (NR_121584, exon 3 of 3) non-coding (NR_121584, exon 3 of 3) 5375 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 218.5-41 chr5 114940629 114940944 + 1 NA Intergenic Intergenic -167373 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 130.75-3 chr1 51913213 51913419 + 1 NA 3' UTR (NM_002867, exon 5 of 5) 3' UTR (NM_002867, exon 5 of 5) -34379 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 145.5-82 chr6 101141966 101142158 + 1 NA Intergenic Intergenic -256923 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 220.5-24 chr2 12472988 12473377 + 1 NA intron (NR_110196, intron 4 of 5) L1MEd|LINE|L1 -243690 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 143.5-72 chr4 52044266 52044466 + 1 NA promoter-TSS (NR_147189) promoter-TSS (NR_147189) -439 NR_147189 105377652 Hs.298335 NR_147189 ENSG00000251040 LINC02480 - long intergenic non-protein coding RNA 2480 ncRNA 168.5-27 chr14 72751350 72751622 + 1 NA intron (NM_001280544, intron 3 of 9) MER5A1|DNA|hAT-Charlie 141163 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 198.5-9 chr11 74123298 74123541 + 1 NA intron (NM_001286577, intron 7 of 32) L2c|LINE|L2 47583 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 158.75-64 chr6 62041791 62042123 + 1 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 244268 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 135.25-89 chr7 52034746 52034992 + 1 NA Intergenic L1ME3B|LINE|L1 -641613 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 174.5-70 chr5 65856040 65856458 + 1 NA Intergenic Intergenic -70305 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 138.75-87 chrX 96251411 96251776 + 1 NA Intergenic MER20|DNA|hAT-Charlie 86309 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 119.25-40 chr18 55182168 55182406 + 1 NA Intergenic Intergenic -57981 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 319.75-3 chr16 77631285 77631863 + 1 NA Intergenic Intergenic -90918 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 166.5-100 chr8 89093123 89093388 + 1 NA Intergenic Intergenic 664456 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 133.25-52 chr20 34216500 34216732 + 1 NA Intergenic L1MEg|LINE|L1 -43749 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 190.5-6 chr1 206860191 206860533 + 1 NA Intergenic L2a|LINE|L2 -5447 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 170.5-10 chr1 212759968 212760277 + 1 NA intron (NM_015471, intron 4 of 5) L1MA3|LINE|L1 31655 NM_001297739 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 196.5-41 chr2 41912483 41912766 + 1 NA Intergenic Intergenic 21099 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 231.75-3 chr1 115537574 115537850 + 1 NA Intergenic LTR24|LTR|ERV1 -104258 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 158.25-38 chr3 190440132 190440359 + 1 NA exon (NM_207316, exon 4 of 5) exon (NM_207316, exon 4 of 5) 9631 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 204.75-6 chr11 128139116 128139345 + 1 NA Intergenic L1MCb|LINE|L1 -69536 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 204.25-25 chr19 32481610 32481934 + 1 NA intron (NM_207325, intron 18 of 18) intron (NM_207325, intron 18 of 18) 75647 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 151.5-53 chr3 111123588 111123853 + 1 NA intron (NM_001243288, intron 4 of 8) intron (NM_001243288, intron 4 of 8) 51904 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 126.5-10 chr1 191943039 191943249 + 1 NA Intergenic Intergenic -215318 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 178.25-45 chr4 98042714 98042949 + 1 NA intron (NM_174952, intron 5 of 10) L1M3de|LINE|L1 100645 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 125.75-3 chr1 49109604 49109805 + 1 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -147707 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 128.25-90 chr9 80298362 80298505 + 1 NA Intergenic Intergenic 323410 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 143.5-32 chr14 22916552 22916705 + 1 NA intron (NM_001352764, intron 1 of 14) intron (NM_001352764, intron 1 of 14) 2521 NM_001077352 55147 Hs.4997 NM_018107 ENSG00000100461 RBM23 CAPERbeta|PP239|RNPC4 RNA binding motif protein 23 protein-coding 145.25-36 chr18 7763884 7764054 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 196653 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 206.75-25 chr5 62327889 62328268 + 1 NA intron (NM_001243952, intron 2 of 20) intron (NM_001243952, intron 2 of 20) 21916 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 154.5-18 chr10 126740345 126740648 + 1 NA Intergenic Intergenic -69986 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 146.75-46 chr5 94431290 94431558 + 1 NA intron (NM_001145678, intron 14 of 20) L2b|LINE|L2 187180 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 117.5-58 chr2 218020628 218020870 + 1 NA Intergenic Intergenic -14185 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 159.25-33 chr2 27336870 27337233 + 1 NA intron (NR_038427, intron 2 of 3) intron (NR_038427, intron 2 of 3) 1509 NR_038427 100505624 Hs.666503 NR_038427 ENSG00000234945 GTF3C2-AS1 - GTF3C2 antisense RNA 1 ncRNA 211.5-35 chr4 44543252 44543622 + 1 NA Intergenic MIR|SINE|MIR -94628 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 231.75-13 chr18 64487138 64487406 + 1 NA Intergenic L1ME3B|LINE|L1 -227217 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 166.5-108 chrX 13521168 13521505 + 1 NA Intergenic Intergenic -48265 NM_015507 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 122.5-94 chr8 93650104 93650324 + 1 NA intron (NR_033858, intron 5 of 10) L1ME3D|LINE|L1 50219 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 265.75-7 chr2 44948605 44948947 + 1 NA Intergenic Intergenic -6898 NR_103786 100506108 Hs.503113 NR_103785 ENSG00000236502 SIX3-AS1 SIX3OS SIX3 antisense RNA 1 ncRNA 133.5-32 chr14 104382310 104382588 + 1 NA Intergenic Intergenic 158865 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 137.25-2 chr1 69829090 69829316 + 1 NA intron (NM_001370785, intron 5 of 26) MIRb|SINE|MIR -90119 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 159.5-69 chr5 56589604 56589791 + 1 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 16559 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 180.75-28 chr15 98751069 98751328 + 1 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -33228 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 203.25-44 chr5 133357885 133358163 + 1 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 69682 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 218.75-44 chrX 79177804 79178145 + 1 NA Intergenic L1MA1|LINE|L1 7002 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 162.5-98 chr9 76789770 76790119 + 1 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 25508 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 219.75-5 chr10 108586235 108586556 + 1 NA Intergenic AluSx1|SINE|Alu -517102 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 124.75-77 chr6 74740339 74740468 + 1 NA Intergenic L1MC3|LINE|L1 388379 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 169.5-76 chr7 48499478 48499771 + 1 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 328166 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 171.5-73 chr5 141530301 141530539 + 1 NA intron (NM_005219, intron 19 of 27) L2c|LINE|L2 -27891 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 179.5-96 chr8 119006722 119007037 + 1 NA intron (NM_001324095, intron 1 of 7) MLT1J2|LTR|ERVL-MaLR 54616 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 148.25-14 chr11 115039770 115040092 + 1 NA Intergenic Zaphod|DNA|hAT-Tip100 -293646 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 225.5-21 chr16 71980436 71980713 + 1 NA intron (NM_181536, intron 7 of 29) AluSz|SINE|Alu 19404 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 123.25-66 chr5 92138067 92138310 + 1 NA Intergenic L1ME2|LINE|L1 -754871 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 153.25-10 chr11 16900314 16900685 + 1 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 25523 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 197.5-60 chr8 112282056 112282308 + 1 NA intron (NM_001363185, intron 54 of 66) intron (NM_001363185, intron 54 of 66) -361311 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 176.5-76 chr6 146104948 146105268 + 1 NA intron (NM_001278065, intron 2 of 9) L1ME3B|LINE|L1 75910 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 248.25-13 chr2 104019263 104019594 + 1 NA Intergenic Intergenic 388904 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 178.75-46 chr5 68180698 68180908 + 1 NA Intergenic Intergenic -9073 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 151.75-30 chr15 52421624 52421915 + 1 NA intron (NM_001142495, intron 4 of 39) MIR3|SINE|MIR 107111 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 223.25-9 chr13 73597493 73597868 + 1 NA Intergenic Intergenic 33436 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 312.25-9 chr4 84008341 84008962 + 1 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 290518 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 162.5-84 chr7 103860104 103860419 + 1 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 129255 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 123.5-104 chr8 35210586 35210739 + 1 NA Intergenic Intergenic -24813 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 135.5-4 chr1 167999754 167999932 + 1 NA intron (NM_001017977, intron 7 of 18) Tigger1|DNA|TcMar-Tigger 1183 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 195.25-31 chr3 62561683 62561925 + 1 NA intron (NM_003716, intron 9 of 29) intron (NM_003716, intron 9 of 29) -188254 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 189.5-38 chr22 40088980 40089550 + 1 NA intron (NM_001024843, intron 1 of 23) AluSz|SINE|Alu 44448 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 168.75-22 chr2 50064793 50065188 + 1 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -90787 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 197.5-70 chrX 82986975 82987300 + 1 NA Intergenic Intergenic -521153 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 114.75-9 chr10 20627079 20627199 + 1 NA Intergenic L1M7|LINE|L1 75169 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 147.25-48 chr4 138791646 138791803 + 1 NA Intergenic Intergenic 220922 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 147.75-55 chr4 36074592 36074766 + 1 NA intron (NR_146894, intron 31 of 32) intron (NR_146894, intron 31 of 32) 169260 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 152.25-64 chr8 58985690 58985941 + 1 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 133332 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 148.75-27 chr18 38821858 38822038 + 1 NA Intergenic L1PA15|LINE|L1 800227 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 209.25-48 chr8 82536916 82537253 + 1 NA Intergenic L1MEf|LINE|L1 -375020 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 170.75-72 chr8 116478104 116478468 + 1 NA Intergenic Intergenic -153227 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 125.5-2 chr1 37496869 37497031 + 1 NA intron (NR_073090, intron 5 of 8) intron (NR_073090, intron 5 of 8) 4044 NR_049844 100847010 NR_049844 ENSG00000263675 MIR5581 - microRNA 5581 ncRNA 211.5-50 chr6 159631714 159632090 + 1 NA Intergenic HAL1|LINE|L1 61339 NM_001322815 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 268.5-29 chr6 162175472 162175857 + 1 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -551468 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 143.25-46 chr3 15835316 15835459 + 1 NA intron (NM_001349279, intron 1 of 28) intron (NM_001349279, intron 1 of 28) 24427 NM_015199 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 212.5-3 chr1 219806799 219807135 + 1 NA Intergenic Intergenic 121684 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 138.5-51 chr18 39853366 39853702 + 1 NA intron (NR_151703, intron 1 of 8) intron (NR_151703, intron 1 of 8) 11825 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 223.25-22 chr6 20832567 20832900 + 1 NA intron (NM_017774, intron 8 of 15) intron (NM_017774, intron 8 of 15) 298276 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 180.5-62 chr3 112307365 112307558 + 1 NA intron (NR_147411, intron 1 of 4) HERV3-int|LTR|ERV1 4983 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 180.5-70 chr5 84225759 84226033 + 1 NA intron (NM_001278642, intron 2 of 9) intron (NM_001278642, intron 2 of 9) 158971 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 209.25-39 chr6 40579947 40580333 + 1 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 7224 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 226.5 chr1 11245114 11245589 + 1 NA intron (NM_004958, intron 8 of 57) intron (NM_004958, intron 8 of 57) 17200 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 115.25-68 chr4 36706146 36706408 + 1 NA Intergenic Intergenic -64377 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 189.75-16 chr18 10126915 10127335 + 1 NA Intergenic L1ME3A|LINE|L1 213109 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 174.25-5 chr1 61502495 61502822 + 1 NA Intergenic Intergenic -151584 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 175.5-11 chr10 68180099 68180350 + 1 NA intron (NR_045662, intron 12 of 19) AluJb|SINE|Alu 51889 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 165.5-47 chr2 76571177 76571443 + 1 NA Intergenic Intergenic -414655 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 137.75-27 chr15 47564662 47564887 + 1 NA intron (NM_001198999, intron 3 of 19) LTR1D|LTR|ERV1 -152731 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 118.5-110 chr7 130008510 130008674 + 1 NA Intergenic Intergenic 42793 NM_001363701 51530 Hs.194157 NM_016478 ENSG00000091732 ZC3HC1 HSPC216|NIPA zinc finger C3HC-type containing 1 protein-coding 128.75-72 chr4 115661038 115661243 + 1 NA Intergenic Intergenic -547520 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 142.5-15 chr10 89122060 89122223 + 1 NA Intergenic Intergenic -58730 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 199.5-6 chr10 67618650 67619012 + 1 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 46829 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 176.5-9 chr10 73298381 73298647 + 1 NA intron (NM_001367801, intron 15 of 27) intron (NM_001367801, intron 15 of 27) 45773 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 173.5-100 chr8 8266584 8266921 + 1 NA Intergenic Intergenic 38182 NR_024361 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 113.25-79 chr21 19653799 19653963 + 1 NA Intergenic Intergenic 245874 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 269.5 chr1 19646409 19646899 + 1 NA promoter-TSS (NM_001278166) promoter-TSS (NM_001278166) 888 NM_001204086 4681 Hs.654502 NM_005380 ENSG00000158747 NBL1 D1S1733E|DAN|DAND1|NB|NO3 NBL1, DAN family BMP antagonist protein-coding 249.25-12 chr2 2519008 2519486 + 1 NA Intergenic Intergenic -187972 NM_015025 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 141.5-6 chr1 118477321 118477593 + 1 NA Intergenic Intergenic -292229 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 118.5-61 chr2 187019269 187019483 + 1 NA Intergenic Intergenic -170206 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 200.5-15 chr12 2468366 2468635 + 1 NA intron (NM_199460, intron 5 of 49).2 intron (NM_199460, intron 5 of 49).2 198724 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 160.75-21 chr14 50856406 50856595 + 1 NA Intergenic Charlie4a|DNA|hAT-Charlie -15553 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 124.25-75 chr7 39296000 39296142 + 1 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 33063 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 216.25-28 chr5 26352780 26353063 + 1 NA Intergenic Intergenic 685665 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 173.5-88 chr6 13886973 13887378 + 1 NA Intergenic L2a|LINE|L2 -37271 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 215.25-12 chr15 98170701 98170961 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -82078 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 158.5-33 chr14 50140115 50140423 + 1 NA intron (NM_006939, intron 16 of 22) intron (NM_006939, intron 16 of 22) -23697 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 139.5-44 chr2 145061023 145061242 + 1 NA intron (NR_033870, intron 3 of 4) LTR16A|LTR|ERVL 393165 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 191.75-45 chr9 470321 470586 + 1 NA intron (NM_001256876, intron 1 of 15) intron (NM_001256876, intron 1 of 15) 162 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 115.75-26 chr15 63422248 63422412 + 1 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 32100 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 142.5-23 chr14 46699071 46699400 + 1 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -47454 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 235.5-18 chr14 40446719 40447039 + 1 NA Intergenic L1ME2z|LINE|L1 -507832 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 121.5-68 chr2 224733747 224733898 + 1 NA Intergenic MER21B|LTR|ERVL -148425 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 201.75-10 chr14 71077160 71077361 + 1 NA intron (NM_014982, intron 28 of 35) intron (NM_014982, intron 28 of 35) 169801 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 179.75-27 chr2 119981750 119982069 + 1 NA 3' UTR (NM_002830, exon 27 of 27) 3' UTR (NM_002830, exon 27 of 27) -31168 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 218.5-12 chr12 65874489 65874919 + 1 NA intron (NR_120478, intron 2 of 2) intron (NR_120478, intron 2 of 2) 6874 NR_120478 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 161.75-40 chr4 59473888 59474185 + 1 NA Intergenic Intergenic 460463 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 150.5-59 chr3 88305850 88306092 + 1 NA Intergenic L2b|LINE|L2 -32485 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 172.25-38 chr2 213411826 213412090 + 1 NA intron (NR_047660, intron 8 of 14) LTR10F|LTR|ERV1 127494 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 163.5-8 chr1 208753778 208754127 + 1 NA Intergenic L2a|LINE|L2 25264 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 177.75-44 chr5 56594364 56594584 + 1 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 11782 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 123.75-65 chr22 39311627 39311860 + 1 NA Intergenic Intergenic 2168 NR_000028 116938 NR_000028 ENSG00000209480 SNORD83B RNU83B|U83B small nucleolar RNA, C/D box 83B snoRNA 168.5-24 chr14 61332538 61332879 + 1 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 11265 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 160.5-31 chr19 29620367 29620617 + 1 NA Intergenic L2b|LINE|L2 14209 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 212.75-27 chr5 55599206 55599644 + 1 NA Intergenic Intergenic -64347 NR_103485 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 215.5-41 chr6 56036916 56037227 + 1 NA Intergenic L1MC5a|LINE|L1 54591 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 202.5-9 chr13 92417590 92417976 + 1 NA intron (NM_004466, intron 7 of 7) AluJb|SINE|Alu -65576 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 252.5-37 chrX 36684920 36685371 + 1 NA Intergenic L1ME4a|LINE|L1 -244853 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 179.25-6 chr10 32191276 32191648 + 1 NA Intergenic Intergenic -135037 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 136.5-98 chr6 123478225 123478460 + 1 NA intron (NM_001256020, intron 8 of 8) intron (NM_001256020, intron 8 of 8) 38738 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 173.5-66 chr3 109023275 109023541 + 1 NA intron (NM_014429, intron 17 of 27) intron (NM_014429, intron 17 of 27) -69529 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 228.75-15 chr15 83316701 83317056 + 1 NA Intergenic Intergenic -32214 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 249.5-17 chr3 16933533 16933904 + 1 NA TTS (NR_037465) TTS (NR_037465) 522 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 180.25-29 chr2 106701567 106701966 + 1 NA Intergenic Intergenic 184262 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 172.5-70 chr6 48018020 48018369 + 1 NA intron (NM_207499, intron 1 of 2) MIR3|SINE|MIR 50495 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 240.75-33 chr9 73477135 73477620 + 1 NA Intergenic Intergenic 325512 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 131.25-18 chr10 99573028 99573184 + 1 NA Intergenic Intergenic 40164 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 113.5-97 chr5 104311669 104311858 + 1 NA Intergenic Intergenic -748974 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 143.5-4 chr1 104457888 104458139 + 1 NA Intergenic Intergenic 384990 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 131.5-87 chr7 42345794 42345951 + 1 NA Intergenic L2b|LINE|L2 -108663 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 166.25-21 chr16 86928875 86929110 + 1 NA Intergenic Intergenic -128792 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 118.25-24 chr12 69259121 69259299 + 1 NA intron (NM_007007, intron 6 of 9) intron (NM_007007, intron 6 of 9) 14008 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 230.75-10 chr2 64916328 64916577 + 1 NA intron (NR_036586, intron 1 of 2) MER3|DNA|hAT-Charlie 15995 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 134.25-28 chr16 76009936 76010090 + 1 NA Intergenic Intergenic -267388 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 217.25-26 chr5 53047766 53048046 + 1 NA intron (NR_073106, intron 4 of 29) MIR|SINE|MIR 58554 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 147.5-53 chr20 59013776 59014019 + 1 NA Intergenic Intergenic -5357 NM_030773 81027 Hs.303023 NM_030773 ENSG00000101162 TUBB1 - tubulin beta 1 class VI protein-coding 150.5-65 chr4 59604675 59605017 + 1 NA Intergenic L1MA6|LINE|L1 591273 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 203.75-23 chr2 72241918 72242318 + 1 NA intron (NR_135773, intron 19 of 21) AluJo|SINE|Alu -94256 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 119.5-12 chr10 30484902 30485083 + 1 NA Intergenic Intergenic 50346 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 204.25-26 chr2 4982097 4982393 + 1 NA Intergenic Intergenic -326023 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 235.25-8 chr12 119221402 119221904 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 42863 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 223.5-7 chr1 195610028 195610347 + 1 NA Intergenic Intergenic 478528 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 226.75-26 chr5 159896280 159896628 + 1 NA Intergenic Intergenic -20028 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 167.5-46 chr20 54648135 54648341 + 1 NA intron (NM_018431, intron 7 of 7) L2a|LINE|L2 172645 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 132.5-118 chr9 78211468 78211650 + 1 NA Intergenic Intergenic -24516 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 142.25-72 chr9 26773556 26773791 + 1 NA Intergenic MIRb|SINE|MIR 119129 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 146.75-53 chr6 102934626 102934857 + 1 NA Intergenic L1MCb|LINE|L1 1535756 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 210.5-9 chr11 102249774 102250015 + 1 NA Intergenic Intergenic -67590 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 138.5-57 chr2 44440438 44440707 + 1 NA intron (NM_024766, intron 3 of 10) MER3|DNA|hAT-Charlie 78625 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 124.5-33 chr14 76222021 76222225 + 1 NA Intergenic L1MC1|LINE|L1 67769 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 231.5-30 chr3 178693080 178693501 + 1 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 134440 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 197.5-42 chr21 25782378 25782685 + 1 NA Intergenic Intergenic -46877 NM_001320267 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 247.5-42 chr8 114334082 114334492 + 1 NA Intergenic Intergenic -897348 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 218.5-5 chr1 239051357 239051775 + 1 NA Intergenic MER2|DNA|TcMar-Tigger -335002 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 149.5-104 chr8 71488377 71488632 + 1 NA intron (NM_001370334, intron 2 of 19) L1ME3|LINE|L1 59200 NM_001370334 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 150.75-30 chr2 59470433 59470698 + 1 NA Intergenic L1ME1|LINE|L1 252857 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 161.5-76 chr5 180064782 180065044 + 1 NA intron (NM_001280801, intron 1 of 7) intron (NM_001280801, intron 1 of 7) 6846 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 233.5-30 chr22 28281105 28281413 + 1 NA intron (NM_001145418, intron 5 of 22) L1MEf|LINE|L1 -178610 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 140.25-34 chr2 31846476 31846743 + 1 NA Intergenic Intergenic -42629 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 112.75-10 chr10 21269376 21269661 + 1 NA Intergenic Intergenic 95216 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 243.5-4 chr12 12454144 12454544 + 1 NA intron (NM_001300742, intron 3 of 3).2 L1MB7|LINE|L1 97266 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 119.5-26 chr12 17426250 17426417 + 1 NA Intergenic L1MCa|LINE|L1 162745 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 301.5-19 chr8 116546271 116546645 + 1 NA Intergenic L2a|LINE|L2 -105642 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 113.75-44 chr16 84701855 84702009 + 1 NA intron (NR_073577, intron 1 of 11) intron (NR_073577, intron 1 of 11) 1932 NR_073577 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 273.75-8 chr14 102759620 102759947 + 1 NA Intergenic Intergenic -17666 NM_001199427 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 136.5-82 chr4 65530391 65530682 + 1 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 138952 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 134.75-17 chr14 35251848 35252139 + 1 NA intron (NM_014672, intron 5 of 7) intron (NM_014672, intron 5 of 7) -26565 NM_001282234 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 136.5-31 chr14 58051570 58051718 + 1 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 100569 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 115.5-5 chr1 177776053 177776183 + 1 NA Intergenic Intergenic 75594 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 170.5-3 chr1 72647463 72647658 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -365021 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 196.25-5 chr10 100354585 100354888 + 1 NA intron (NM_005063, intron 4 of 5) intron (NM_005063, intron 4 of 5) 7503 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 122.75-38 chr19 29422980 29423214 + 1 NA intron (NR_040029, intron 2 of 9) intron (NR_040029, intron 2 of 9) 102655 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 118.25-59 chr22 30786465 30786700 + 1 NA intron (NM_001282740, intron 1 of 12) L2b|LINE|L2 22329 NM_001282740 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 246.5-2 chr12 15371772 15372146 + 1 NA intron (NM_030667, intron 1 of 26) THE1D|LTR|ERVL-MaLR 49451 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 147.75-22 chr14 59895628 59895879 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -23960 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 189.5-54 chr6 68632020 68632345 + 1 NA TTS (NR_125872) TTS (NR_125872) 2142 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 216.5-29 chr4 134592907 134593123 + 1 NA Intergenic Intergenic 169147 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 198.5-31 chr3 12279983 12280224 + 1 NA Intergenic Intergenic -7382 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 150.5-92 chr8 125915402 125915619 + 1 NA Intergenic MIR|SINE|MIR 35687 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 256.5-8 chr12 24126259 24126566 + 1 NA intron (NM_152989, intron 4 of 17) L2|LINE|L2 -86009 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 123.5 chr1 13889061 13889290 + 1 NA Intergenic Intergenic 139760 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 248.5-15 chr2 89849578 89849908 + 1 NA Intergenic Intergenic -211836 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 252.5-32 chr6 56296866 56297298 + 1 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -49502 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 118.5-83 chr5 11520964 11521193 + 1 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 67839 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 207.5-48 chr5 126200564 126200781 + 1 NA Intergenic Intergenic 21095 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 158.5-79 chr4 52839350 52839739 + 1 NA Intergenic Intergenic -22773 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 165.75-79 chrUn_KI270442v1 83759 83962 + 1 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 216.75 chr1 22450807 22451324 + 1 NA promoter-TSS (NM_001330398) promoter-TSS (NM_001330398) -786 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 143.25-69 chr7 79792596 79792751 + 1 NA Intergenic L1MC4|LINE|L1 338713 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 234.75-17 chr15 79084646 79084949 + 1 NA intron (NM_001145648, intron 1 of 26) intron (NM_001145648, intron 1 of 26) 5983 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 118.5-21 chr10 79394799 79394944 + 1 NA intron (NM_153367, intron 2 of 3) intron (NM_153367, intron 2 of 3) 47402 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 141.75-42 chr2 76970725 76970905 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -15150 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 182.5-66 chr7 95659799 95660146 + 1 NA Intergenic Intergenic -63456 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 137.5-65 chr2 209744363 209744544 + 1 NA Intergenic L1PA10|LINE|L1 -27379 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 166.5-79 chr5 888618 888884 + 1 NA intron (NM_001009877, intron 5 of 15) intron (NM_001009877, intron 5 of 15) 3771 NR_134296 65980 Hs.449278 NM_023924 ENSG00000028310 BRD9 LAVS3040|PRO9856 bromodomain containing 9 protein-coding 222.5-31 chr3 48364867 48365167 + 1 NA Intergenic L1MD2|LINE|L1 -7202 NM_001159929 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 123.5-66 chr3 111437784 111438026 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -104292 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 226.5-52 chr8 123168685 123169030 + 1 NA Intergenic MLT1N2|LTR|ERVL-MaLR -10190 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 121.5-19 chr10 116878315 116878484 + 1 NA intron (NM_001242699, intron 11 of 13) intron (NM_001242699, intron 11 of 13) -28677 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 117.75-16 chr12 65443032 65443177 + 1 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 114207 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 166.75-9 chr10 56543448 56543788 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -182345 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 171.5-32 chr17 39454587 39454820 + 1 NA Intergenic Intergenic -3440 NM_004774 5469 Hs.643754 NM_004774 ENSG00000125686 MED1 CRSP1|CRSP200|DRIP205|DRIP230|PBP|PPARBP|PPARGBP|RB18A|TRAP220|TRIP2 mediator complex subunit 1 protein-coding 137.25-79 chr8 128012970 128013266 + 1 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 4220 NR_031611 100302170 NR_031611 ENSG00000283200 MIR1206 MIRN1206|hsa-mir-1206 microRNA 1206 ncRNA 180.5-42 chr2 121831122 121831427 + 1 NA Intergenic Intergenic 75623 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 206.75-29 chr6 137143243 137143578 + 1 NA TTS (NM_052962) TTS (NM_052962) 30234 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 185.25-37 chr3 113114765 113115073 + 1 NA Intergenic Intergenic 52812 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 229.5-21 chr16 47579282 47579708 + 1 NA intron (NM_001031835, intron 8 of 31) intron (NM_001031835, intron 8 of 31) 118164 NM_000293 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 129.5-82 chr6 61730709 61730914 + 1 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 156681 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 233.75-13 chr14 62320936 62321279 + 1 NA Intergenic Intergenic -181134 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 241.25-11 chr3 15789894 15790319 + 1 NA intron (NM_001349284, intron 2 of 2) L1MA1|LINE|L1 7873 NM_001349284 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 141.5-35 chr15 85811728 85811971 + 1 NA Intergenic L1MD1|LINE|L1 -13786 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 158.75-35 chr2 182967781 182968159 + 1 NA intron (NM_013436, intron 15 of 30) intron (NM_013436, intron 15 of 30) 70487 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 185.5-43 chr20 9451958 9452276 + 1 NA intron (NM_000933, intron 28 of 35) intron (NM_000933, intron 28 of 35) -62241 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 113.5-42 chr15 64991030 64991245 + 1 NA Intergenic Intergenic -1223 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 117.5-80 chr6 17502459 17502658 + 1 NA intron (NR_110855, intron 3 of 3) intron (NR_110855, intron 3 of 3) 8707 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 126.5-31 chr14 20787154 20787336 + 1 NA Intergenic Intergenic 5977 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 181.5-3 chr1 237229676 237229943 + 1 NA intron (NM_001035, intron 1 of 104) MamGypsy2-I|LTR|Gypsy 187625 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 208.25-10 chr17 77415135 77415350 + 1 NA intron (NM_001293696, intron 1 of 9) intron (NM_001293696, intron 1 of 9) 10165 NM_001293696 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 337.5-7 chr3 82799819 82800181 + 1 NA Intergenic Intergenic 813858 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 177.75-30 chr21 34780531 34780833 + 1 NA intron (NR_038885, intron 1 of 2) intron (NR_038885, intron 1 of 2) 34857 NR_038886 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 193.5-67 chr6 97887246 97887531 + 1 NA Intergenic Intergenic -137143 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 173.5-61 chr22 25099157 25099460 + 1 NA intron (NM_001145206, intron 4 of 10) MIR|SINE|MIR 13384 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 252.5-10 chr16 5319430 5319774 + 1 NA Intergenic L2c|LINE|L2 -221782 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 115.5-36 chr17 59283537 59283675 + 1 NA Intergenic Intergenic -48049 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 190.25-42 chr5 1708568 1708898 + 1 NA TTS (NR_036240) TTS (NR_036240) 135 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 148.5-5 chr1 180861591 180861858 + 1 NA intron (NM_004736, intron 11 of 14) intron (NM_004736, intron 11 of 14) -51173 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 171.5-70 chr5 83810735 83811005 + 1 NA Intergenic Intergenic -90015 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 143.5-95 chr7 91978407 91978628 + 1 NA intron (NM_147185, intron 2 of 49) MIRc|SINE|MIR 37642 NM_005751 10142 Hs.651221 NM_005751 ENSG00000127914 AKAP9 AKAP-9|AKAP350|AKAP450|CG-NAP|HYPERION|LQT11|MU-RMS-40.16A|PPP1R45|PRKA9|YOTIAO A-kinase anchoring protein 9 protein-coding 127.5-24 chr11 69533597 69533754 + 1 NA Intergenic Intergenic 48114 NR_120542 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 195.25-17 chr14 81292783 81293140 + 1 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -71571 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 248.5 chr1 206841956 206842227 + 1 NA intron (NM_013371, intron 6 of 6) MIR3|SINE|MIR 7742 NM_001369605 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 120.5-13 chr10 86125598 86125806 + 1 NA intron (NM_017551, intron 4 of 15) Tigger2|DNA|TcMar-Tigger 139086 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 179.75-7 chr10 83210089 83210426 + 1 NA Intergenic L1ME3G|LINE|L1 466832 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 136.75-4 chr1 165609762 165609909 + 1 NA Intergenic AluJb|SINE|Alu -21399 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 194.5-54 chr4 96595636 96596059 + 1 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 285144 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 136.5-45 chr17 78073862 78074018 + 1 NA intron (NM_018996, intron 8 of 20) Tigger17c|DNA|TcMar-Tigger 37859 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 120.5-51 chr2 180158899 180159073 + 1 NA Intergenic Intergenic -151689 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 186.25-45 chr6 90238037 90238450 + 1 NA intron (NM_001170794, intron 1 of 6) intron (NM_001170794, intron 1 of 6) 58600 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 231.5-32 chr3 183837535 183837881 + 1 NA intron (NM_001037639, intron 6 of 8) L1MDa|LINE|L1 -12131 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 220.75-40 chrX 74754556 74754908 + 1 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) -140108 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 210.5-8 chr10 117297195 117297425 + 1 NA intron (NM_173791, intron 3 of 4) L1ME1|LINE|L1 56196 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 188.75-12 chr15 67359320 67359693 + 1 NA intron (NM_001031715, intron 7 of 20) intron (NM_001031715, intron 7 of 20) -104308 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 166.75-24 chr17 78657012 78657388 + 1 NA Intergenic AluSq2|SINE|Alu -25143 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 137.75-93 chr8 143449849 143450095 + 1 NA intron (NM_015117, intron 9 of 11) MSTA-int|LTR|ERVL-MaLR -19240 NM_201589 389692 NM_201589 ENSG00000182759 MAFA INSDM|RIPE3b1|hMafA MAF bZIP transcription factor A protein-coding 130.5-11 chr1 200125609 200125825 + 1 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 82892 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 227.75-24 chr8 95353725 95354113 + 1 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -84718 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 122.25-47 chr2 45413581 45413805 + 1 NA intron (NM_018079, intron 18 of 20) AluSx|SINE|Alu -158752 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 144.5-46 chr16 10888755 10888952 + 1 NA intron (NR_104444, intron 1 of 17) intron (NR_104444, intron 1 of 17) 11651 NR_104444 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 187.5 chr1 31769888 31770191 + 1 NA Intergenic Intergenic -5699 NM_001294336 576 Hs.524138 NM_001294335 ENSG00000121753 ADGRB2 BAI2 adhesion G protein-coupled receptor B2 protein-coding 240.75-32 chr8 120448273 120448781 + 1 NA intron (NM_022045, intron 2 of 21) Tigger6a|DNA|TcMar-Tigger 3108 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 226.5-29 chr2 157849372 157849714 + 1 NA intron (NM_001347664, intron 1 of 11) MER99|DNA|hAT? -10913 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 131.5-14 chr10 99295054 99295304 + 1 NA Intergenic MIR|SINE|MIR -33920 NR_144311 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 228.25-4 chr1 201389206 201389674 + 1 NA intron (NM_005558, intron 1 of 9) MER33|DNA|hAT-Charlie 9884 NM_005558 3898 Hs.519035 NM_005558 ENSG00000159166 LAD1 LadA ladinin 1 protein-coding 174.5-11 chr10 131047508 131047725 + 1 NA Intergenic LTR8B|LTR|ERV1 -47602 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 230.5-11 chr13 47034684 47035116 + 1 NA Intergenic LTR3B_|LTR|ERVK -137824 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 230.5-46 chr6 97618193 97618613 + 1 NA intron (NR_110757, intron 3 of 4) intron (NR_110757, intron 3 of 4) 312817 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 134.5-27 chr16 8032611 8032817 + 1 NA Intergenic Intergenic 557124 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 184.75-5 chr1 187480160 187480476 + 1 NA Intergenic MamSINE1|SINE|tRNA-RTE 36690 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 159.25-67 chr8 120725600 120725816 + 1 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -35545 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 182.5-61 chr6 9071971 9072214 + 1 NA Intergenic Intergenic 419883 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 216.5-32 chr5 57143784 57144024 + 1 NA Intergenic L1M1|LINE|L1 -30044 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 199.25-26 chr3 31699090 31699413 + 1 NA intron (NM_001174060, intron 6 of 10) L2|LINE|L2 -4962 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 209.25-60 chrX 56815835 56816098 + 1 NA intron (NM_001348129, intron 2 of 2) intron (NM_001348129, intron 2 of 2) -78382 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 112.75-46 chr2 65204682 65204964 + 1 NA Intergenic L1MA8|LINE|L1 -22872 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 219.25-14 chr18 35519310 35519810 + 1 NA Intergenic MER90a|LTR|ERV1 -21600 NM_001098817 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 125.5-86 chr3 193112474 193112637 + 1 NA Intergenic MER92-int|LTR|ERV1 -128667 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 218.5-2 chr1 45235165 45235473 + 1 NA Intergenic MSTB-int|LTR|ERVL-MaLR -28714 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 156.5-21 chr14 50098611 50098886 + 1 NA intron (NR_131171, intron 1 of 8) MER2|DNA|TcMar-Tigger 6295 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 259.5-23 chr5 103496262 103496697 + 1 NA Intergenic L1MEh|LINE|L1 45506 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 292.5-18 chr9 99512782 99513223 + 1 NA Intergenic Intergenic -137745 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 203.75-7 chr14 38385046 38385312 + 1 NA Intergenic L1MB8|LINE|L1 -129086 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 217.5-14 chr16 58468799 58469144 + 1 NA intron (NM_022910, intron 1 of 15) intron (NM_022910, intron 1 of 15) 4149 NM_022910 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 215.5-14 chr14 47078459 47078942 + 1 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 264546 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 116.5-53 chr18 11312273 11312474 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -142105 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 123.5-88 chr5 57860548 57860855 + 1 NA Intergenic Intergenic 38461 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 161.75-10 chr12 46794683 46794917 + 1 NA intron (NM_001143824, intron 1 of 15) L1MEd|LINE|L1 31197 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 125.75-24 chr15 61984931 61985280 + 1 NA intron (NM_001018088, intron 18 of 81) intron (NM_001018088, intron 18 of 81) 75342 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 156.5-49 chr3 170413544 170413821 + 1 NA Intergenic Intergenic -5186 NM_005602 5010 Hs.31595 NM_005602 ENSG00000013297 CLDN11 OSP|OTM claudin 11 protein-coding 154.75-15 chr14 44408983 44409304 + 1 NA Intergenic Intergenic 98140 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 164.5-15 chr11 72205104 72205269 + 1 NA Intergenic LTR37-int|LTR|ERV1 -11608 NM_001113536 2350 Hs.433159 NM_000803 ENSG00000165457 FOLR2 BETA-HFR|FBP|FBP/PL-1|FR-BETA|FR-P3|FRbeta folate receptor beta protein-coding 143.75-40 chr16 74575692 74575894 + 1 NA intron (NR_027264, intron 1 of 26) intron (NR_027264, intron 1 of 26) 31321 NM_001145666 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 167.25-86 chrX 88434483 88434787 + 1 NA Intergenic L1PB|LINE|L1 -312590 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 117.5-20 chr14 51144057 51144230 + 1 NA Intergenic AluJr|SINE|Alu -48439 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 200.75-22 chr2 140285043 140285478 + 1 NA intron (NM_018557, intron 84 of 90) (TA)n|Simple_repeat|Simple_repeat 301425 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 145.5-74 chr5 21175244 21175440 + 1 NA Intergenic AluSz6|SINE|Alu -284138 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 155.75-60 chr6 89073615 89073805 + 1 NA Intergenic Intergenic -7041 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 255.25-21 chr7 63922202 63922526 + 1 NA Intergenic L1MC2|LINE|L1 -76442 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 133.5-44 chr2 22088219 22088378 + 1 NA Intergenic L1MC4|LINE|L1 -377646 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 170.5-37 chr18 1900514 1900763 + 1 NA Intergenic Intergenic -541009 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 189.5-59 chr7 20001308 20001648 + 1 NA intron (NR_110114, intron 3 of 5) Tigger2a|DNA|TcMar-Tigger 138948 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 192.75-39 chr6 43624828 43625048 + 1 NA exon (NM_001286216, exon 6 of 12) exon (NM_001286216, exon 6 of 12) 2415 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 161.75-60 chr8 66008845 66009087 + 1 NA Intergenic Intergenic -6012 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 195.5-66 chr4 93339148 93339423 + 1 NA intron (NM_001286838, intron 7 of 14) MLT1C|LTR|ERVL-MaLR -489468 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 261.5-12 chr17 52213727 52214070 + 1 NA Intergenic Intergenic -53881 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 158.5-3 chr1 67009683 67009895 + 1 NA intron (NM_015139, intron 10 of 11) L1PA16|LINE|L1 44359 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 126.75-27 chr15 69503063 69503189 + 1 NA Intergenic Intergenic 50308 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 139.5-99 chr7 48514263 48514537 + 1 NA intron (NM_152701, intron 51 of 61) L3|LINE|CR1 342942 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 183.25-12 chr13 24898991 24899198 + 1 NA intron (NR_047594, intron 9 of 17) intron (NR_047594, intron 9 of 17) 23767 NR_047594 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 169.25-53 chr8 46636201 46636591 + 1 NA Intergenic BSR/Beta|Satellite|Satellite -18753 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 188.5-13 chr14 45679372 45679626 + 1 NA Intergenic Intergenic 36103 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 141.75-57 chr4 24300053 24300292 + 1 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 172733 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 121.75-90 chr8 57430207 57430421 + 1 NA Intergenic Intergenic 86527 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 139.25-14 chr10 106658032 106658234 + 1 NA intron (NM_001206569, intron 17 of 25) L2c|LINE|L2 506573 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 188.75-48 chr7 49930536 49930880 + 1 NA Intergenic L1ME4c|LINE|L1 155375 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 137.75-32 chr16 65200395 65200681 + 1 NA Intergenic LTR89|LTR|ERVL? -23965 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 170.75-11 chr10 32687050 32687312 + 1 NA intron (NM_001321115, intron 23 of 43) MER76-int|LTR|ERVL 214291 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 138.5-82 chr4 160857342 160857748 + 1 NA Intergenic Intergenic -1079761 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 226.25-27 chr5 23270741 23271202 + 1 NA Intergenic Intergenic -236638 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 165.75-24 chr15 88608253 88608509 + 1 NA TTS (NR_031590) TTS (NR_031590) 274 NR_031590 100302235 NR_031590 ENSG00000221630 MIR1179 MIRN1179|hsa-mir-1179|mir-1179 microRNA 1179 ncRNA 224.5-7 chr1 218840165 218840502 + 1 NA intron (NR_031644, intron 6 of 6) AluJr|SINE|Alu 78178 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 113.5-61 chr2 120009318 120009493 + 1 NA Intergenic Intergenic -3672 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 209.75-21 chr2 129264495 129264751 + 1 NA intron (NR_122042, intron 1 of 3) MIR|SINE|MIR 9268 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 147.5 chr1 39509279 39509539 + 1 NA intron (NM_181809, intron 1 of 6) intron (NM_181809, intron 1 of 6) -5457 NR_132962 192217 Hs.472491 NR_132962 ENSG00000237624 OXCT2P1 OXCT2P 3-oxoacid CoA-transferase 2 pseudogene 1 pseudo 140.25-84 chr7 36305831 36306076 + 1 NA Intergenic Intergenic 61287 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 164.5-43 chr2 221338936 221339149 + 1 NA Intergenic AluSc|SINE|Alu 233262 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 224.25-12 chr14 52347440 52347833 + 1 NA Intergenic L1ME3Cz|LINE|L1 33324 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 140.5-27 chr14 65433079 65433343 + 1 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 20481 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 140.5-7 chr10 79013688 79013903 + 1 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 53653 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 146.5-73 chr5 81442445 81442648 + 1 NA intron (NM_012446, intron 13 of 16) intron (NM_012446, intron 13 of 16) -48412 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 177.5-40 chr20 11627675 11627926 + 1 NA Intergenic Intergenic 242915 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 190.5-44 chr3 79540649 79540873 + 1 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 32874 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 196.25-18 chr14 73286232 73286542 + 1 NA intron (NM_001005743, intron 9 of 12) intron (NM_001005743, intron 9 of 12) -40386 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 126.5-104 chr7 6648386 6648549 + 1 NA intron (NM_001278559, intron 8 of 8) intron (NM_001278559, intron 8 of 8) 11149 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 190.75-38 chr4 97866872 97867149 + 1 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 276466 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 323.25-6 chr19 28668797 28669143 + 1 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 58724 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 138.5-56 chr2 42686049 42686221 + 1 NA intron (NM_001330443, intron 9 of 16) intron (NM_001330443, intron 9 of 16) 78126 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 164.25-25 chr18 3511348 3511525 + 1 NA intron (NM_001242762, intron 7 of 9) (AGTAGAA)n|Simple_repeat|Simple_repeat 45186 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 155.5-6 chr1 81600766 81600991 + 1 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -43176 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 212.5-6 chr10 83224075 83224410 + 1 NA Intergenic Intergenic 452847 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 128.25-35 chr2 178098533 178098699 + 1 NA intron (NM_001077197, intron 2 of 20) L1M7|LINE|L1 9723 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 146.75-7 chr10 57295028 57295304 + 1 NA Intergenic Intergenic 9393 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 212.25 chr1 177041436 177041760 + 1 NA intron (NM_207108, intron 2 of 21) intron (NM_207108, intron 2 of 21) -12153 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 118.5-84 chr5 22568687 22568830 + 1 NA intron (NM_004061, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 284586 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 171.75-7 chr10 68995145 68995336 + 1 NA intron (NM_015634, intron 1 of 6) AluJb|SINE|Alu 6437 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 160.75-54 chr5 167316452 167316778 + 1 NA intron (NM_001122679, intron 2 of 29) (ATACAC)n|Simple_repeat|Simple_repeat -148214 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 184.75-6 chr1 192602544 192602799 + 1 NA Intergenic L2|LINE|L2 26898 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 230.5-6 chr11 3857943 3858263 + 1 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 2041 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 116.5-126 chr8 140348301 140348467 + 1 NA intron (NM_001160372, intron 9 of 22) L1ME4c|LINE|L1 109360 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 118.5-56 chr19 48262099 48262319 + 1 NA Intergenic Intergenic -6263 NM_001351787 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 270.5-8 chr15 40326365 40326840 + 1 NA 3' UTR (NM_001301268, exon 1 of 1) 3' UTR (NM_001301268, exon 1 of 1) 2910 NM_001301268 100505573 Hs.530791 NM_001301268 ENSG00000259330 INAFM2 LINC00984|OGU1 InaF motif containing 2 protein-coding 114.25-34 chr16 6655876 6656024 + 1 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -117859 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 146.5-60 chr3 82086436 82086640 + 1 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 100396 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 167.25-78 chr7 107455015 107455182 + 1 NA intron (NM_181733, intron 6 of 20) intron (NM_181733, intron 6 of 20) -14959 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 158.5-23 chr11 89484839 89485229 + 1 NA intron (NM_001291929, intron 1 of 16) intron (NM_001291929, intron 1 of 16) 5726 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 215.75-13 chr2 200761739 200762021 + 1 NA intron (NR_135012, intron 18 of 30) intron (NR_135012, intron 18 of 30) -26703 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 120.25-30 chr16 50630967 50631211 + 1 NA intron (NM_033119, intron 8 of 9) intron (NM_033119, intron 8 of 9) -37766 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 116.75-54 chr4 42002498 42002679 + 1 NA intron (NM_006345, intron 2 of 17) L1PA16|LINE|L1 12058 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 131.25-46 chr2 127641178 127641332 + 1 NA intron (NM_001136037, intron 7 of 10) intron (NM_001136037, intron 7 of 10) -4609 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 153.5-36 chr17 7563135 7563398 + 1 NA non-coding (NR_037926, exon 2 of 22) non-coding (NR_037926, exon 2 of 22) 1274 NR_037926 100533955 Hs.129673 NR_037926 SENP3-EIF4A1 - SENP3-EIF4A1 readthrough (NMD candidate) ncRNA 202.25-26 chr3 174423092 174423323 + 1 NA Intergenic LTR16E1|LTR|ERVL -436127 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 173.5-79 chr5 11736629 11736830 + 1 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) -147663 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 154.25-26 chr13 81376541 81376788 + 1 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -149681 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 207.5-25 chr19 42095651 42095948 + 1 NA exon (NM_001207025, exon 9 of 14) exon (NM_001207025, exon 9 of 14) 19633 NM_022752 64763 Hs.13323 NM_022752 ENSG00000105732 ZNF574 FP972 zinc finger protein 574 protein-coding 126.25-52 chr20 45363172 45363387 + 1 NA non-coding (NR_003189, exon 1 of 6) non-coding (NR_003189, exon 1 of 6) 110 NR_003189 767557 Hs.730643 NR_003189 ENSG00000254806 SYS1-DBNDD2 C20orf169-DBNDD2 SYS1-DBNDD2 readthrough (NMD candidate) ncRNA 273.5-16 chr4 187802579 187803105 + 1 NA Intergenic L1MA3|LINE|L1 -130201 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 257.75-20 chr5 41157290 41157656 + 1 NA intron (NM_000065, intron 13 of 17) MER58A|DNA|hAT-Charlie 56059 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 185.75-59 chrX 63122215 63122575 + 1 NA Intergenic L1M2|LINE|L1 228937 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 121.25-54 chr4 153817934 153818133 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -28950 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 130.25-17 chr12 11834902 11835050 + 1 NA intron (NM_001987, intron 2 of 7) MIR3|SINE|MIR 185122 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 142.25-46 chr3 170097289 170097627 + 1 NA intron (NM_024947, intron 14 of 14) intron (NM_024947, intron 14 of 14) 59463 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 186.5-9 chr10 50378824 50379072 + 1 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -130338 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 224.75-9 chr15 73978818 73979278 + 1 NA 3' UTR (NM_001256672, exon 7 of 7) 3' UTR (NM_001256672, exon 7 of 7) 13247 NM_004809 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 257.75-25 chr9 82759887 82760167 + 1 NA Intergenic L2|LINE|L2 303115 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 127.5-97 chr5 44649841 44650049 + 1 NA Intergenic Intergenic -139663 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 176.25-33 chr2 49227337 49227687 + 1 NA Intergenic Intergenic -72985 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 121.25-58 chr5 107051839 107052104 + 1 NA Intergenic L1ME2|LINE|L1 -40957 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 189.5-5 chr10 68158484 68158824 + 1 NA intron (NR_045663, intron 7 of 17) intron (NR_045663, intron 7 of 17) 49166 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 197.25-57 chr7 33671105 33671371 + 1 NA Intergenic Intergenic -233677 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 133.25-53 chr3 22671516 22671727 + 1 NA Intergenic Intergenic 530957 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 172.75-22 chr20 51725752 51726037 + 1 NA exon (NM_006045, exon 3 of 28) exon (NM_006045, exon 3 of 28) 42496 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 139.5-28 chr14 54044018 54044195 + 1 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -87215 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 141.5-87 chr5 18238005 18238178 + 1 NA Intergenic Intergenic 430817 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 172.25-21 chr14 70639134 70639436 + 1 NA intron (NR_110071, intron 1 of 2) MIR|SINE|MIR 2013 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 217.5-50 chr8 123348704 123349114 + 1 NA promoter-TSS (NR_030382) promoter-TSS (NR_030382) -779 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 137.75-58 chr3 147809141 147809392 + 1 NA Intergenic Intergenic -268893 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 209.5-40 chr5 58159909 58160313 + 1 NA Intergenic AluSc|SINE|Alu -37770 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 163.5-39 chr2 75927991 75928248 + 1 NA Intergenic Intergenic -217204 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 174.5-8 chr10 69756696 69756884 + 1 NA Intergenic Intergenic -45116 NM_080805 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 178.25-51 chr6 7357276 7357685 + 1 NA intron (NM_001170692, intron 9 of 13) intron (NM_001170692, intron 9 of 13) 32262 NM_001170693 285782 Hs.721486 NM_175745 ENSG00000164304 CAGE1 CT3|CT95|CTAG3|bA69L16.7 cancer antigen 1 protein-coding 167.75-12 chr11 90733937 90734188 + 1 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 135140 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 157.25-41 chr20 2663889 2664098 + 1 NA exon (NM_001330763, exon 2 of 13) exon (NM_001330763, exon 2 of 13) 223 NM_174855 3420 Hs.436405 NM_006899 ENSG00000101365 IDH3B RP46 isocitrate dehydrogenase (NAD(+)) 3 beta protein-coding 146.75-5 chr10 13168098 13168456 + 1 NA intron (NM_018518, intron 2 of 19) intron (NM_018518, intron 2 of 19) 6719 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 176.25-19 chr14 27246507 27246835 + 1 NA Intergenic Intergenic 338029 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 180.5-25 chr14 68268648 68268904 + 1 NA intron (NM_133509, intron 7 of 10) L2c|LINE|L2 360011 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 150.5-27 chr14 69192683 69192852 + 1 NA intron (NM_001193363, intron 1 of 8) L1ME3G|LINE|L1 1001 NR_034165 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 196.75-37 chr5 150648756 150649115 + 1 NA exon (NM_001166209, exon 3 of 3) exon (NM_001166209, exon 3 of 3) 8275 NM_007286 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 135.25-51 chr2 177211278 177211468 + 1 NA TTS (NR_157853) TTS (NR_157853) 1038 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 234.75-48 chrX 42183980 42184289 + 1 NA Intergenic Intergenic -260580 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 129.5-6 chr1 208576262 208576474 + 1 NA Intergenic MIRc|SINE|MIR -152320 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 163.5-60 chr3 178712825 178713076 + 1 NA intron (NM_001278911, intron 1 of 4) MIRc|SINE|MIR 147455 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 174.5-87 chr9 81027904 81028282 + 1 NA Intergenic Intergenic 661442 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 261.5-6 chr14 52053461 52053794 + 1 NA exon (NM_007361, exon 5 of 22) exon (NM_007361, exon 5 of 22) 15432 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 211.25 chr1 38833428 38833833 + 1 NA Intergenic Intergenic 26142 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 121.75-21 chr14 48919861 48920002 + 1 NA Intergenic Intergenic 666449 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 279.25-9 chr16 9958080 9958521 + 1 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 223767 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 154.25-23 chr12 49828964 49829348 + 1 NA promoter-TSS (NM_001368048) promoter-TSS (NM_001368048) 613 NR_027501 100286844 Hs.656019 NR_027499 ENSG00000258057 BCDIN3D-AS1 - BCDIN3D antisense RNA 1 ncRNA 211.5-42 chr5 118103517 118103890 + 1 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -178871 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 160.75-66 chr8 57920100 57920289 + 1 NA Intergenic Intergenic -58164 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 127.5-112 chr6 120021619 120021764 + 1 NA Intergenic L1MA8|LINE|L1 6512 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 170.5-61 chr5 40778521 40778740 + 1 NA intron (NM_006251, intron 1 of 8) L1ME1|LINE|L1 19547 NM_001355036 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 209.25-51 chr8 133595699 133595930 + 1 NA Intergenic MIRc|SINE|MIR -23927 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 123.5-25 chr12 41203864 41204042 + 1 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 15633 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 187.75-29 chr21 30879228 30879541 + 1 NA Intergenic Intergenic 2196 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 242.25-7 chr14 90752514 90752940 + 1 NA intron (NM_001320421, intron 3 of 20) MIRb|SINE|MIR 55394 NR_135190 105370622 Hs.662373 NR_135190 ENSG00000258716 LOC105370622 - uncharacterized LOC105370622 ncRNA 118.5-93 chr6 77455235 77455448 + 1 NA Intergenic Intergenic 8681 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 140.25-13 chr12 10537650 10537826 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR -15641 NR_146456 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 207.5-4 chr10 29892947 29893188 + 1 NA Intergenic LTR37B|LTR|ERV1 -156131 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 152.5-22 chr11 93228277 93228486 + 1 NA Intergenic L1MC4|LINE|L1 -30390 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 124.75-81 chr7 37199861 37200180 + 1 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 153648 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 245.5-15 chr2 235418297 235418542 + 1 NA Intergenic Intergenic -75624 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 118.5-51 chr18 13114994 13115119 + 1 NA intron (NM_032142, intron 42 of 44) intron (NM_032142, intron 42 of 44) -103704 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 125.5-91 chr4 58721705 58721863 + 1 NA Intergenic Intergenic -185456 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 229.5-44 chr6 46447250 46447653 + 1 NA intron (NM_001251973, intron 2 of 4) L1MA8|LINE|L1 43872 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 169.75-46 chr4 129165609 129165823 + 1 NA Intergenic Intergenic 69564 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 129.25-85 chr9 123265509 123265707 + 1 NA intron (NM_018387, intron 1 of 18) intron (NM_018387, intron 1 of 18) 2978 NM_001171137 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 181.75-39 chr7 53723812 53724134 + 1 NA intron (NR_038371, intron 4 of 5) L1MEc|LINE|L1 87958 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 147.5-50 chr2 150357687 150357926 + 1 NA Intergenic Intergenic -100799 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 153.25-45 chr5 128978462 128978729 + 1 NA intron (NM_001017372, intron 1 of 9) intron (NM_001017372, intron 1 of 9) 13107 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 172.25-35 chr2 137062682 137062878 + 1 NA intron (NM_001316349, intron 3 of 27) L1MC2|LINE|L1 297235 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 156.25-33 chr2 41634191 41634478 + 1 NA Intergenic Intergenic -243221 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 126.5-29 chr12 129577398 129577555 + 1 NA intron (NM_133448, intron 2 of 8) Tigger2b_Pri|DNA|TcMar-Tigger 326549 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 157.75-36 chr18 22852499 22852796 + 1 NA Intergenic L1MEf|LINE|L1 -65810 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 177.5-31 chr2 27415034 27415253 + 1 NA Intergenic Intergenic -5552 NM_177983 5496 Hs.643951 NM_177983 ENSG00000115241 PPM1G PP2CG|PP2CGAMMA|PPP2CG protein phosphatase, Mg2+/Mn2+ dependent 1G protein-coding 208.5-16 chr12 117959123 117959365 + 1 NA intron (NM_173598, intron 1 of 19) L2a|LINE|L2 9746 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 182.25-32 chr22 32065870 32066180 + 1 NA intron (NM_001256314, intron 1 of 13) intron (NM_001256314, intron 1 of 13) 6855 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 158.5-101 chr8 111342106 111342424 + 1 NA Intergenic Intergenic -34374 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 153.25-12 chr11 87223964 87224176 + 1 NA intron (NR_033149, intron 4 of 13) intron (NR_033149, intron 4 of 13) 186136 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 294.25-2 chr1 162490745 162491131 + 1 NA Intergenic Intergenic -6236 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 206.5-42 chr5 169694487 169694835 + 1 NA intron (NR_156756, intron 9 of 52) intron (NR_156756, intron 9 of 52) 57386 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 183.25-16 chr16 77110571 77110889 + 1 NA Intergenic Intergenic -80460 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 222.75-2 chr1 49295394 49295660 + 1 NA intron (NR_136623, intron 2 of 12) L2c|LINE|L2 38116 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 231.75 chr1 26775950 26776208 + 1 NA intron (NM_139135, intron 19 of 19) AluJo|SINE|Alu -11884 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 136.5-81 chr4 63390948 63391199 + 1 NA Intergenic Intergenic 1018377 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 186.25-36 chr3 106235649 106235879 + 1 NA Intergenic L2a|LINE|L2 -366363 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 125.5-73 chr21 16342146 16342302 + 1 NA intron (NR_027790, intron 4 of 7) L1M5|LINE|L1 -57456 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 118.5-77 chr4 46007032 46007242 + 1 NA Intergenic L1MC4|LINE|L1 116917 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 140.5-100 chr6 112390477 112390698 + 1 NA Intergenic Intergenic 43257 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 149.75-71 chr8 133184137 133184320 + 1 NA Intergenic L1ME3|LINE|L1 -6811 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 133.75-68 chr6 47368023 47368252 + 1 NA Intergenic L1MA8|LINE|L1 -58232 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 177.75-28 chr21 14525884 14526081 + 1 NA intron (NM_001286523, intron 1 of 8) AluSx|SINE|Alu 20333 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 152.75-40 chr22 25834662 25835014 + 1 NA intron (NM_032608, intron 16 of 43) intron (NM_032608, intron 16 of 43) 92650 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 151.5-19 chr11 117245144 117245395 + 1 NA intron (NM_001077239, intron 5 of 14) AluSz6|SINE|Alu 12533 NM_001278249 257160 Hs.591934 NM_207343 ENSG00000167257 RNF214 - ring finger protein 214 protein-coding 125.5-48 chr15 58256960 58257177 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR 118687 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 169.25-29 chr2 51699304 51699799 + 1 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 666950 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 119.5-99 chr5 44281521 44281688 + 1 NA Intergenic Intergenic -107128 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 164.5-20 chr14 57819906 57820181 + 1 NA intron (NM_001352012, intron 1 of 8) L1M5|LINE|L1 44956 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 155.5-80 chr5 97882044 97882304 + 1 NA intron (NR_146299, intron 2 of 2) intron (NR_146299, intron 2 of 2) 41416 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 190.25-18 chr14 77678142 77678409 + 1 NA intron (NM_006020, intron 4 of 5) intron (NM_006020, intron 4 of 5) 29748 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 143.5-6 chr1 208747747 208747927 + 1 NA Intergenic Intergenic 19149 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 128.5-39 chr2 43459798 43460030 + 1 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 136060 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 179.25-39 chr6 55904202 55904459 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -28740 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 176.25-53 chr5 24367685 24367870 + 1 NA Intergenic LTR27D|LTR|ERV1 277201 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 118.5-43 chr16 59109322 59109519 + 1 NA Intergenic Intergenic -375104 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 228.75-12 chr12 52357714 52357991 + 1 NA Intergenic Intergenic 6770 NM_001300810 3891 Hs.182507 NM_002283 ENSG00000135443 KRT85 ECTD4|HB5|Hb-5|K85|KRTHB5|hHb5 keratin 85 protein-coding 152.5-17 chr10 69820960 69821236 + 1 NA intron (NM_080801, intron 1 of 38) intron (NM_080801, intron 1 of 38) 19192 NM_001368895 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 219.25 chr1 111788581 111788906 + 1 NA intron (NM_172198, intron 2 of 6) MIR|SINE|MIR 32842 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 157.25-16 chr11 115460537 115460734 + 1 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 43780 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 135.75-49 chr2 110816430 110816729 + 1 NA intron (NM_001371254, intron 9 of 18) intron (NM_001371254, intron 9 of 18) 84006 NM_001365487 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 158.5-29 chr12 118752118 118752390 + 1 NA Intergenic Intergenic 9425 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 154.5-16 chr10 98392865 98393096 + 1 NA exon (NM_032709, exon 9 of 16) exon (NM_032709, exon 9 of 16) 2327 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 125.5-64 chr2 49426045 49426444 + 1 NA Intergenic Intergenic -271717 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 155.75-56 chr5 122875100 122875357 + 1 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 29615 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 180.75-21 chr13 113877807 113878010 + 1 NA TTS (NR_047035) TTS (NR_047035) 5578 NR_047035 100874178 Hs.547957 NR_047035 ENSG00000226921 LINC00454 - long intergenic non-protein coding RNA 454 ncRNA 155.75-54 chr5 99837003 99837385 + 1 NA Intergenic Intergenic 303204 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 153.75-47 chr20 60668686 60668965 + 1 NA Intergenic Intergenic 104263 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 196.5-75 chr8 137773889 137774247 + 1 NA Intergenic Intergenic 309477 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 139.5-46 chr2 164480730 164480956 + 1 NA Intergenic Intergenic 87652 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 190.75-43 chr5 96753481 96753835 + 1 NA intron (NM_001042446, intron 15 of 26) intron (NM_001042446, intron 15 of 26) 10056 NR_104285 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 130.75-48 chr20 1972032 1972277 + 1 NA intron (NR_134520, intron 3 of 3) MER113|DNA|hAT-Charlie 20652 NM_001190892 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 119.5-43 chr15 89590270 89590422 + 1 NA intron (NM_001308025, intron 4 of 21) Tigger9a|DNA|TcMar-Tigger 14759 NM_001308025 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 132.5-27 chr14 63473557 63473733 + 1 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 34593 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 120.5-47 chr2 89781160 89781387 + 1 NA Intergenic Intergenic -143366 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 182.5-30 chr2 54934100 54934395 + 1 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 76025 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 164.5-84 chr6 104465364 104465620 + 1 NA Intergenic Intergenic 394054 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 267.5-32 chr7 93843981 93844309 + 1 NA Intergenic Intergenic 46608 NM_001271003 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 140.5-4 chr1 70912876 70913096 + 1 NA intron (NR_028293, intron 2 of 4) L1M4|LINE|L1 -133520 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 167.25-66 chr5 158123941 158124139 + 1 NA Intergenic Intergenic -264895 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 183.5-27 chr16 82896545 82896759 + 1 NA intron (NM_001220490, intron 2 of 12) LTR16B2|LTR|ERVL 93646 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 161.5-11 chr10 36608813 36609042 + 1 NA Intergenic Intergenic -516930 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 140.5-107 chr7 94823777 94824045 + 1 NA Intergenic MER34C|LTR|ERV1 -83683 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 174.5-54 chr3 47127641 47127885 + 1 NA intron (NR_146158, intron 1 of 21) AluSq2|SINE|Alu 36214 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 127.5-130 chr9 99925420 99925585 + 1 NA intron (NM_017919, intron 2 of 7) L1MEc|LINE|L1 18848 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 153.5-66 chr3 98062182 98062472 + 1 NA Intergenic Intergenic -24846 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 133.5-116 chr8 112341246 112341379 + 1 NA intron (NM_001363185, intron 38 of 66) intron (NM_001363185, intron 38 of 66) -302181 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 197.75-36 chr4 81985896 81986185 + 1 NA Intergenic Intergenic 387951 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 146.5-46 chr2 26876366 26876648 + 1 NA intron (NM_001253724, intron 1 of 12) L2|LINE|L2 28083 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 116.5-54 chr19 29374088 29374370 + 1 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) 151523 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 177.5-27 chr18 13048068 13048322 + 1 NA intron (NM_032142, intron 15 of 44) MER44C|DNA|TcMar-Tigger 56833 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 126.25-95 chr8 139560184 139560433 + 1 NA Intergenic L1MD1|LINE|L1 142815 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 207.5-45 chr4 87193995 87194279 + 1 NA intron (NM_020803, intron 2 of 9) MLT1A1|LTR|ERVL-MaLR 26131 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 142.25-20 chr14 39362800 39362977 + 1 NA intron (NM_001354155, intron 22 of 22) L1MA4A|LINE|L1 69612 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 155.25-64 chr7 24175274 24175453 + 1 NA Intergenic AluJr|SINE|Alu -108827 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 254.5-15 chr20 14543399 14543789 + 1 NA intron (NM_001351663, intron 4 of 17) L3|LINE|CR1 -10790 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 198.75-2 chr1 115020374 115020739 + 1 NA Intergenic L1PA4|LINE|L1 -9268 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 127.5-40 chr16 24527100 24527340 + 1 NA Intergenic Intergenic -12346 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 229.75-5 chr10 54839588 54839909 + 1 NA intron (NM_001354404, intron 4 of 34) L1M4|LINE|L1 -38457 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 181.5-54 chr5 63523221 63523456 + 1 NA Intergenic Intergenic 438954 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 246.75-21 chr3 116448910 116449218 + 1 NA Intergenic Intergenic -3577 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 168.5-63 chr6 7479332 7479570 + 1 NA Intergenic Intergenic -62220 NM_001008844 1832 Hs.519873 NM_004415 ENSG00000096696 DSP DCWHKTA|DP desmoplakin protein-coding 127.5-45 chr17 31627107 31627360 + 1 NA Intergenic L1ME3B|LINE|L1 51822 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 120.75-77 chr5 4996077 4996267 + 1 NA Intergenic L1MB7|LINE|L1 -38187 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 180.5-5 chr1 219816870 219817255 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 111589 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 114.5-86 chr5 153607253 153607439 + 1 NA intron (NM_001258020, intron 3 of 16) L1ME3|LINE|L1 115174 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 204.5-61 chr7 77359376 77359636 + 1 NA intron (NR_146937, intron 14 of 31) intron (NR_146937, intron 14 of 31) -55692 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 322.25-16 chr8 136031457 136031822 + 1 NA Intergenic Intergenic -499159 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 190.5-8 chr10 20033953 20034286 + 1 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 217687 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 209.25-36 chr5 159477835 159478103 + 1 NA Intergenic HAL1|LINE|L1 -11693 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 114.5-7 chr10 44045318 44045495 + 1 NA Intergenic Intergenic 133004 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 203.5-8 chr10 125757376 125757690 + 1 NA intron (NR_110859, intron 24 of 25) L1MCc|LINE|L1 -5473 NR_120633 101927983 Hs.634269 NR_120633 ENSG00000236991 EDRF1-AS1 - EDRF1 antisense RNA 1 ncRNA 257.5-34 chr9 27657306 27657726 + 1 NA Intergenic Intergenic -83650 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 235.5-42 chr4 183210723 183211086 + 1 NA intron (NM_024949, intron 4 of 22) Tigger3a|DNA|TcMar-Tigger 29730 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 188.5-25 chr19 44671091 44671427 + 1 NA promoter-TSS (NM_020219) promoter-TSS (NM_020219) -193 NM_001127893 56971 Hs.416925 NM_020219 ENSG00000186567 CEACAM19 CEACM19|CEAL1 carcinoembryonic antigen related cell adhesion molecule 19 protein-coding 214.25-31 chr4 32378233 32378643 + 1 NA Intergenic L1ME1|LINE|L1 27400 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 184.25-19 chr2 40285912 40286213 + 1 NA intron (NM_001351483, intron 2 of 8) L2a|LINE|L2 144242 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 227.75-10 chr2 119297657 119297942 + 1 NA Intergenic Intergenic -48728 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 167.25-83 chr9 4486327 4486523 + 1 NA Intergenic LTR29|LTR|ERV1 -4043 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 283.5-21 chr7 23678566 23679118 + 1 NA Intergenic AluSg|SINE|Alu -1357 NM_001127364 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 167.75-18 chr14 46849438 46849626 + 1 NA intron (NM_001113498, intron 15 of 16) intron (NM_001113498, intron 15 of 16) -197751 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 131.25-4 chr1 53720606 53720874 + 1 NA intron (NM_001367484, intron 2 of 10) L1MA4|LINE|L1 13464 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 146.25-67 chr7 97133597 97133788 + 1 NA intron (NM_020186, intron 1 of 1) intron (NM_020186, intron 1 of 1) 17099 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 153.5-98 chr9 26674693 26674916 + 1 NA Intergenic Intergenic 217998 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 357.5-11 chr7 33582595 33583152 + 1 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -322042 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 167.5-61 chr4 65970067 65970257 + 1 NA Intergenic (AATTTAA)n|Simple_repeat|Simple_repeat -299667 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 122.5-8 chr10 13149904 13150209 + 1 NA Intergenic L1MC2|LINE|L1 -11502 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 205.5-40 chr3 129329654 129329991 + 1 NA Intergenic AluSc8|SINE|Alu -13536 NM_006026 8971 Hs.75307 NM_006026 ENSG00000184897 H1FX H1.10|H1X H1 histone family member X protein-coding 261.5-15 chr2 76891933 76892266 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -93866 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 117.5-89 chr7 78981010 78981296 + 1 NA intron (NM_001301128, intron 2 of 20) L1MEd|LINE|L1 -27835 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 151.25 chr1 115725369 115725554 + 1 NA intron (NM_001232, intron 7 of 10) intron (NM_001232, intron 7 of 10) 43344 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 126.25-59 chr3 88529986 88530169 + 1 NA Intergenic L1MD|LINE|L1 191621 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 146.25-12 chr11 24575239 24575559 + 1 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 78346 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 248.25-16 chr2 185696138 185696631 + 1 NA Intergenic Intergenic 42335 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 114.5-74 chr4 30617572 30617696 + 1 NA Intergenic Intergenic -102735 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 143.25-14 chr11 83468811 83468986 + 1 NA intron (NM_001142699, intron 25 of 27) intron (NM_001142699, intron 25 of 27) -182491 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 172.5-44 chr3 19805519 19805725 + 1 NA Intergenic L1PA16|LINE|L1 128595 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 118.25-61 chr3 2875119 2875396 + 1 NA intron (NM_175607, intron 8 of 24) AluSz|SINE|Alu -16958 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 125.25-88 chrX 48034554 48034892 + 1 NA Intergenic Intergenic -21587 NR_046742 100874120 Hs.618606 NR_046742 ZNF630-AS1 - ZNF630 antisense RNA 1 ncRNA 125.5-63 chr2 46810709 46810859 + 1 NA Intergenic L1ME3B|LINE|L1 -5884 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 265.5-6 chr11 26424896 26425318 + 1 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -48795 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 171.5-64 chr4 182850473 182850668 + 1 NA Intergenic Intergenic 66683 NM_001351743 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 132.5-41 chr16 84342692 84342894 + 1 NA Intergenic LTR23|LTR|ERV1 -25730 NM_001286527 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 320.25-6 chr2 197355938 197356378 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -45378 NM_001367496 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 119.5-81 chr3 135923046 135923234 + 1 NA Intergenic Intergenic -42588 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 149.25-18 chr12 24979998 24980384 + 1 NA Intergenic Intergenic 17274 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 212.25-14 chr14 67605996 67606467 + 1 NA Intergenic Intergenic -5930 NM_001363694 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 242.5-29 chr4 71800690 71800992 + 1 NA intron (NM_001204306, intron 1 of 13) intron (NM_001204306, intron 1 of 13) 3200 NM_001204307 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 120.75-54 chr2 186601942 186602178 + 1 NA exon (NM_001144999, exon 2 of 30) exon (NM_001144999, exon 2 of 30) 1855 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 150.25-28 chr14 82843675 82843904 + 1 NA Intergenic Intergenic 201157 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 117.25-53 chr22 40282397 40282645 + 1 NA intron (NM_001162501, intron 11 of 22) intron (NM_001162501, intron 11 of 22) -63979 NM_001123378 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 119.5-8 chr1 208867093 208867221 + 1 NA Intergenic Intergenic -105297 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 133.5-69 chr3 151776904 151777080 + 1 NA intron (NR_026915, intron 2 of 2) intron (NR_026915, intron 2 of 2) 6536 NR_026915 201651 Hs.383050 NR_026915 ENSG00000240602 AADACP1 - arylacetamide deacetylase pseudogene 1 pseudo 132.5-88 chr4 158011854 158012089 + 1 NA Intergenic Intergenic -158781 NR_147407 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 166.5-14 chr10 13047127 13047418 + 1 NA intron (NM_001282658, intron 5 of 6) Charlie2a|DNA|hAT-Charlie -45559 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 129.75-50 chr21 31892959 31893234 + 1 NA intron (NM_014586, intron 1 of 10) MER34C2|LTR|ERV1 20076 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 220.5-30 chr21 36227575 36227795 + 1 NA intron (NM_005128, intron 12 of 36) intron (NM_005128, intron 12 of 36) 63144 NM_005128 9980 Hs.204575 NM_005128 ENSG00000142197 DOP1B 21orf5|C21orf5|DOPEY2 DOP1 leucine zipper like protein B protein-coding 157.75-10 chr10 25537117 25537305 + 1 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -114501 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 200.25-21 chr15 100382406 100382866 + 1 NA intron (NR_120374, intron 1 of 4) intron (NR_120374, intron 1 of 4) 9697 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 186.5-7 chr10 20220443 20220675 + 1 NA intron (NM_032812, intron 12 of 13) intron (NM_032812, intron 12 of 13) -331411 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 224.5-35 chr6 115023006 115023393 + 1 NA Intergenic Intergenic 620636 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 217.5-8 chr12 48017901 48018433 + 1 NA Intergenic Intergenic -13691 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 237.5-38 chr7 37760767 37761090 + 1 NA Intergenic L1MA9|LINE|L1 77162 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 201.5-20 chr15 77698869 77699198 + 1 NA intron (NM_001301192, intron 2 of 4) intron (NM_001301192, intron 2 of 4) -2538 NM_001301199 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 136.75-88 chr6 140220324 140220611 + 1 NA Intergenic L3b|LINE|CR1 15215 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 274.5-7 chr13 67810688 67811154 + 1 NA Intergenic Intergenic 438534 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 260.75-24 chrX 46788489 46788825 + 1 NA Intergenic AluSx|SINE|Alu -29539 NM_001257291 84679 Hs.91389 NM_032591 ENSG00000065923 SLC9A7 MRX108|NHE-7|NHE7|SLC9A6 solute carrier family 9 member A7 protein-coding 173.25-7 chr10 32179851 32180142 + 1 NA Intergenic Intergenic -123571 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 131.75-33 chr14 85450829 85450980 + 1 NA Intergenic Intergenic 56989 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 133.25-32 chr17 59644781 59645016 + 1 NA intron (NM_001288653, intron 2 of 31) intron (NM_001288653, intron 2 of 31) 25003 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 132.75-47 chr17 13152491 13152928 + 1 NA Intergenic L1MC1|LINE|L1 -134645 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 167.75 chr1 41299364 41299664 + 1 NA Intergenic L1M5|LINE|L1 -57208 NM_001172220 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 125.5-66 chr2 73751563 73751845 + 1 NA Intergenic LTR39-int|LTR|ERV1 -14298 NM_001330389 51002 Hs.157401 NM_016058 ENSG00000144034 TPRKB CGI-121|CGI121|GAMOS5 TP53RK binding protein protein-coding 144.25-77 chr8 57915091 57915349 + 1 NA Intergenic Intergenic -63138 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 140.5-98 chr6 102487993 102488158 + 1 NA Intergenic L1MD1|LINE|L1 1089090 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 127.5-35 chr14 61099548 61099923 + 1 NA Intergenic Intergenic -118045 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 264.75-14 chr21 26504727 26505083 + 1 NA intron (NR_135515, intron 2 of 3) L1MA1|LINE|L1 68381 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 186.5-46 chr4 123122575 123122806 + 1 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 199612 NM_001317799 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 155.25-68 chr7 47611139 47611298 + 1 NA Intergenic Intergenic -10721 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 172.5-29 chr2 66710042 66710357 + 1 NA Intergenic Intergenic -6972 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 142.75-13 chr10 36602463 36602763 + 1 NA Intergenic Intergenic -523244 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 192.5-3 chr1 170785952 170786513 + 1 NA Intergenic Intergenic 122101 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 183.5-62 chr5 38860820 38861174 + 1 NA intron (NM_003999, intron 1 of 17) L1MA4A|LINE|L1 14985 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 216.5-2 chr1 185492740 185492985 + 1 NA Intergenic L1ME3|LINE|L1 135626 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 165.25-13 chr12 83314534 83314899 + 1 NA Intergenic Intergenic 627561 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 129.5-71 chr4 133540067 133540289 + 1 NA Intergenic L1M5|LINE|L1 390884 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 211.5-13 chr13 61497196 61497488 + 1 NA Intergenic Intergenic -69396 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 137.5-87 chr4 102428324 102428519 + 1 NA intron (NR_136202, intron 2 of 4) intron (NR_136202, intron 2 of 4) -72938 NM_001165412 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 139.5-93 chr6 69845704 69845867 + 1 NA Intergenic Intergenic -20771 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 188.5-37 chr3 102238594 102238923 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie 75053 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 223.5-48 chr22 19454652 19455074 + 1 NA intron (NM_001035247, intron 10 of 11) intron (NM_001035247, intron 10 of 11) -6631 NM_173793 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 163.5-29 chr14 45746762 45747026 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -31292 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 131.25-80 chr7 3471752 3471898 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 170573 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 144.5-4 chr1 95979880 95980062 + 1 NA Intergenic L1ME1|LINE|L1 -12097 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 165.25-25 chr2 69666301 69666626 + 1 NA intron (NM_001320698, intron 2 of 14) L1MB8|LINE|L1 22655 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 144.5-75 chr3 128119736 128120099 + 1 NA intron (NM_001319086, intron 1 of 9) L2a|LINE|L2 3895 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 131.25-32 chr13 85054354 85054497 + 1 NA Intergenic Intergenic 93632 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 127.5-124 chr8 97906559 97906870 + 1 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 37650 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 122.5-27 chr13 104754694 104754911 + 1 NA Intergenic Intergenic -711065 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 134.5-95 chr8 75702120 75702354 + 1 NA Intergenic Intergenic 162269 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 138.25-8 chr1 164399471 164399642 + 1 NA Intergenic L1ME2|LINE|L1 -159804 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 144.5-111 chr9 38765931 38766256 + 1 NA Intergenic Intergenic 145005 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 207.75 chr1 63012624 63013021 + 1 NA promoter-TSS (NR_146606) promoter-TSS (NR_146606) -351 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 206.5-12 chr12 70613181 70613484 + 1 NA intron (NM_001109754, intron 3 of 33) intron (NM_001109754, intron 3 of 33) -3308 NM_001206971 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 131.5-46 chr2 187553682 187553839 + 1 NA intron (NM_001329239, intron 1 of 9) intron (NM_001329239, intron 1 of 9) 675 NM_001329241 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 206.5-26 chr2 55037571 55037909 + 1 NA intron (NM_001321904, intron 2 of 9) L1ME2|LINE|L1 9586 NM_001321863 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 137.75-91 chr8 132821838 132821975 + 1 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) -45052 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 162.5-27 chr14 45645039 45645346 + 1 NA Intergenic L1ME3A|LINE|L1 70410 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 124.5-52 chr2 24851046 24851221 + 1 NA intron (NM_001320613, intron 3 of 21) intron (NM_001320613, intron 3 of 21) 57708 NR_136183 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 133.25-83 chr8 116298433 116298672 + 1 NA intron (NR_046215, intron 1 of 13) AluJb|SINE|Alu 26507 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 222.75-22 chr2 29215357 29215756 + 1 NA intron (NM_004304, intron 23 of 28) MIRc|SINE|MIR 8344 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 118.25-60 chr22 41319642 41319778 + 1 NA intron (NM_017590, intron 1 of 22) L2a|LINE|L2 -17341 NM_001317930 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 221.5-39 chr6 56722008 56722252 + 1 NA intron (NM_001144770, intron 3 of 94) MER58B|DNA|hAT-Charlie -79241 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 414.5-3 chr21 20930764 20931492 + 1 NA Intergenic Intergenic -67281 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 147.25-25 chr2 49475278 49475455 + 1 NA Intergenic L1PB4|LINE|L1 -320839 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 183.75-20 chr15 33609706 33610011 + 1 NA intron (NM_001243996, intron 18 of 102) intron (NM_001243996, intron 18 of 102) 298891 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 148.5-77 chr5 10261633 10261809 + 1 NA exon (NM_001306153, exon 8 of 11) exon (NM_001306153, exon 8 of 11) 11184 NM_001306156 22948 Hs.1600 NM_012073 ENSG00000150753 CCT5 CCT-epsilon|CCTE|HEL-S-69|PNAS-102|TCP-1-epsilon chaperonin containing TCP1 subunit 5 protein-coding 215.5-8 chr11 93119330 93119653 + 1 NA Intergenic Intergenic 77935 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 302.5-13 chr4 32761386 32761761 + 1 NA Intergenic Intergenic 410535 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 319.5-13 chr5 40590302 40590763 + 1 NA Intergenic L1PA15|LINE|L1 -89383 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 196.25-50 chr4 70932122 70932357 + 1 NA intron (NM_173468, intron 1 of 5) intron (NM_173468, intron 1 of 5) 29870 NM_001244766 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 190.5-43 chr3 29143854 29144073 + 1 NA Intergenic Intergenic 136976 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 200.5-13 chr11 43907261 43907507 + 1 NA intron (NM_139178, intron 8 of 9) intron (NM_139178, intron 8 of 9) 10081 NR_026952 729799 Hs.368920 NR_026952 ENSG00000213693 SEC14L1P1 - SEC14 like 1 pseudogene 1 pseudo 174.5-80 chr8 91182284 91182525 + 1 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -23081 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 160.75-71 chr9 98411769 98412083 + 1 NA intron (NM_005458, intron 7 of 18) intron (NM_005458, intron 7 of 18) -156277 NM_001267571 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 128.25-37 chr20 10715498 10715715 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie -37484 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 224.5-40 chr7 139565357 139565754 + 1 NA 3' UTR (NM_022740, exon 15 of 15) 3' UTR (NM_022740, exon 15 of 15) 41870 NM_001353368 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 239.75-4 chr10 42316879 42317400 + 1 NA Intergenic Intergenic 50906 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 160.75-46 chr4 33093362 33093552 + 1 NA Intergenic Intergenic 742419 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 113.5-74 chr3 39725039 39725180 + 1 NA Intergenic Intergenic -83805 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 158.5-44 chr17 63790694 63791030 + 1 NA intron (NM_203499, intron 2 of 17) AluSz|SINE|Alu 16673 NM_007372 11325 Hs.702010 NM_007372 ENSG00000198231 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD-box helicase 42 protein-coding 196.5-49 chr22 27333680 27334008 + 1 NA Intergenic L2a|LINE|L2 23193 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 164.25-65 chr9 27479930 27480121 + 1 NA intron (NM_024761, intron 1 of 3) AluJr4|SINE|Alu -44289 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 134.5-36 chr18 31555170 31555494 + 1 NA intron (NR_045216, intron 1 of 5) intron (NR_045216, intron 1 of 5) 1579 NR_045216 100652770 Hs.562766 NR_045216 ENSG00000264859 DSG2-AS1 - DSG2 antisense RNA 1 ncRNA 305.5-17 chr7 106583600 106584126 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 77295 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 153.25-14 chr12 381857 382035 + 1 NA intron (NM_001042603, intron 3 of 27) AluJo|SINE|Alu 7374 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 214.5-23 chr2 28039340 28039607 + 1 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 43106 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 153.75-67 chr5 115351440 115351838 + 1 NA Intergenic MER105|DNA|hAT-Charlie -54985 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 123.5-12 chr10 76702292 76702461 + 1 NA Intergenic Intergenic -185668 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 175.75-47 chr8 81319777 81319993 + 1 NA Intergenic L3|LINE|CR1 39349 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 277.25-22 chr4 47534093 47534528 + 1 NA intron (NM_020453, intron 5 of 22) L1MC5a|LINE|L1 49035 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 151.5-78 chr7 13531602 13531868 + 1 NA Intergenic Intergenic 454779 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 203.5-38 chr4 91549635 91549903 + 1 NA intron (NM_001145065, intron 10 of 10) AluSz6|SINE|Alu 727533 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 205.25-22 chr3 55375208 55375584 + 1 NA Intergenic Intergenic 106002 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 149.5-40 chr16 65990373 65990644 + 1 NA Intergenic Intergenic -376183 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 158.75-37 chr2 194650128 194650483 + 1 NA Intergenic L1ME3B|LINE|L1 -80290 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 143.25-39 chr2 229446357 229446688 + 1 NA intron (NM_139072, intron 8 of 12) intron (NM_139072, intron 8 of 12) -175235 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 126.25-45 chr2 121292909 121293055 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -7780 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 134.5-64 chr3 122423758 122423977 + 1 NA non-coding (NR_026698, exon 15 of 15) non-coding (NR_026698, exon 15 of 15) 7661 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 155.25-10 chr11 109067275 109067449 + 1 NA Intergenic L1M4b|LINE|L1 -354828 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 243.5-6 chr14 54563568 54563969 + 1 NA Intergenic Intergenic -3844 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 158.75-61 chr5 171306578 171306828 + 1 NA Intergenic Intergenic -2545 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 140.5-114 chr9 35109876 35110033 + 1 NA intron (NM_025182, intron 1 of 8) intron (NM_025182, intron 1 of 8) 1498 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 227.5-46 chr6 56707212 56707523 + 1 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -64478 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 163.5-61 chr4 30879037 30879434 + 1 NA intron (NM_032457, intron 1 of 2) (TTCT)n|Simple_repeat|Simple_repeat 158866 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 380.5-7 chr5 51248260 51248705 + 1 NA Intergenic Intergenic 134850 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 126.5-72 chr3 110092181 110092488 + 1 NA Intergenic Intergenic 489506 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 247.25-31 chr9 80717065 80717376 + 1 NA Intergenic Intergenic 742197 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 276.5-11 chr3 113301999 113302336 + 1 NA intron (NM_001164496, intron 32 of 34) L1MA8|LINE|L1 90051 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 190.75-2 chr1 51183344 51183707 + 1 NA Intergenic Intergenic 51571 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 213.5-46 chr7 28908336 28908563 + 1 NA Intergenic L1MA7|LINE|L1 49881 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 192.5-55 chr8 25834280 25834578 + 1 NA Intergenic Intergenic 210984 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 150.75-31 chr2 69131907 69132175 + 1 NA intron (NM_032208, intron 12 of 17) intron (NM_032208, intron 12 of 17) 28359 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 186.75-32 chr21 21482648 21482923 + 1 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 254534 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 116.5-92 chr5 89344941 89345110 + 1 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -440920 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 152.25-75 chrX 75060032 75060296 + 1 NA intron (NM_001271699, intron 14 of 14) intron (NM_001271699, intron 14 of 14) 96119 NM_001271698 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 125.75-68 chr7 1800691 1800952 + 1 NA Intergenic Intergenic 43432 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 150.75-9 chr11 120395418 120395678 + 1 NA intron (NM_001301084, intron 1 of 40) THE1B|LTR|ERVL-MaLR 10221 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 290.75-9 chr4 71211912 71212260 + 1 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 24800 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 142.25-9 chr10 101549924 101550125 + 1 NA intron (NM_001256856, intron 12 of 13) MER63D|DNA|hAT-Blackjack 38233 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 132.25-47 chr2 168516563 168516758 + 1 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 60388 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 162.5-16 chr11 34655804 34656020 + 1 NA intron (NM_012153, intron 6 of 8) intron (NM_012153, intron 6 of 8) 23346 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 147.25-44 chr3 131740475 131740745 + 1 NA intron (NM_130808, intron 2 of 15) L2a|LINE|L2 -237639 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 232.75-21 chr6 122817700 122818110 + 1 NA Intergenic Intergenic 28647 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 264.5-28 chr8 132492733 132493134 + 1 NA Intergenic Intergenic -11838 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 145.5-13 chr10 84164616 84164798 + 1 NA Intergenic Intergenic 7369 NR_134505 642934 NR_134505 ENSG00000285972 CERNA2 HOST2|lncRNA-HOST2 competing endogenous lncRNA 2 for microRNA let-7b ncRNA 182.5-24 chr17 60850544 60850864 + 1 NA intron (NM_001330413, intron 7 of 25) L1MC2|LINE|L1 172853 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 132.5-15 chr11 85551252 85551466 + 1 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 75911 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 130.5-17 chr11 12759301 12759526 + 1 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 84992 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 152.5-77 chr3 188775903 188776182 + 1 NA intron (NM_001167672, intron 7 of 9) L2b|LINE|L2 87261 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 168.25-18 chr13 32981165 32981387 + 1 NA Intergenic Intergenic -35147 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 208.75-26 chr5 144410869 144411296 + 1 NA intron (NM_001370487, intron 2 of 2) L1MA4|LINE|L1 205691 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 163.75-38 chr21 19606147 19606394 + 1 NA Intergenic MER57A-int|LTR|ERV1 293485 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 184.75-54 chr7 71817256 71817513 + 1 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) -509614 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 184.5-26 chr14 62702615 62702847 + 1 NA 3' UTR (NM_172375, exon 10 of 10) 3' UTR (NM_172375, exon 10 of 10) 342727 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 180.5-83 chr7 68402201 68402415 + 1 NA Intergenic Intergenic 382055 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 196.5-29 chr14 67771558 67771992 + 1 NA intron (NM_015346, intron 28 of 41) intron (NM_015346, intron 28 of 41) 44815 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 203.25-40 chr4 177892781 177893039 + 1 NA intron (NR_108092, intron 1 of 1) L1ME3A|LINE|L1 15026 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 234.5-32 chr4 87728522 87728837 + 1 NA Intergenic Intergenic -70875 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 171.75-4 chr1 119776605 119776901 + 1 NA Intergenic L1MEh|LINE|L1 -7821 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 156.75-19 chr12 4987329 4987645 + 1 NA Intergenic Intergenic -56392 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 267.75-6 chr2 108556678 108557202 + 1 NA intron (NM_001193483, intron 1 of 9) LTR3B|LTR|ERVK 22585 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 178.5-51 chr3 147837836 147838147 + 1 NA Intergenic L1PA8|LINE|L1 -240168 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 151.75-28 chr14 62941714 62941907 + 1 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 103648 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 189.75-38 chr5 15473820 15474267 + 1 NA Intergenic Intergenic -26137 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 132.75-21 chr10 95988366 95988687 + 1 NA intron (NM_001349008, intron 20 of 34) intron (NM_001349008, intron 20 of 34) -11565 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 145.75-36 chr2 59533591 59533850 + 1 NA Intergenic Intergenic 316012 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 199.25-32 chr5 129820818 129821195 + 1 NA Intergenic Intergenic 72912 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 225.5-22 chr16 85835099 85835442 + 1 NA Intergenic MIR|SINE|MIR 35575 NM_001861 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 210.25-22 chr2 76032180 76032453 + 1 NA Intergenic Intergenic -321401 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 163.25-48 chr4 32661165 32661463 + 1 NA Intergenic Intergenic 310276 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 179.75-18 chr15 73058820 73059013 + 1 NA intron (NM_002499, intron 1 of 28) intron (NM_002499, intron 1 of 28) 6432 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 204.5-23 chr18 12940178 12940642 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -7574 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 139.5-17 chr12 14403088 14403252 + 1 NA intron (NM_181352, intron 1 of 14) (ATTTTT)n|Simple_repeat|Simple_repeat 17889 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 174.75-2 chr1 66084255 66084492 + 1 NA intron (NM_001037340, intron 1 of 14) L4_A_Mam|LINE|RTE-X -33655 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 113.5-94 chr5 4695956 4696147 + 1 NA Intergenic L1ME1|LINE|L1 -77430 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 149.5-59 chr2 190623981 190624171 + 1 NA Intergenic FLAM_A|SINE|Alu -24819 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 185.25-8 chr10 24027645 24027867 + 1 NA intron (NM_001098500, intron 2 of 18) L1ME3D|LINE|L1 -181035 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 198.25-26 chr20 59116141 59116561 + 1 NA Intergenic Intergenic -73505 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 245.5-18 chr21 30359866 30360253 + 1 NA Intergenic Intergenic -11453 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 136.75-51 chr2 169694041 169694386 + 1 NA promoter-TSS (NM_001199285) promoter-TSS (NM_001199285) 192 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 178.25-40 chr3 160345018 160345276 + 1 NA intron (NM_001190242, intron 7 of 18) L1MA2|LINE|L1 38619 NM_001190242 57560 Hs.478095 NM_020800 ENSG00000068885 IFT80 ATD2|SRTD2|WDR56 intraflagellar transport 80 protein-coding 196.5-39 chr18 63869150 63869417 + 1 NA Intergenic Intergenic -18422 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 166.5-20 chr10 82169280 82169561 + 1 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 63500 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 121.75-18 chr13 81896388 81896613 + 1 NA Intergenic L1PA13|LINE|L1 -669517 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 187.5-51 chr3 100380886 100381264 + 1 NA intron (NM_014820, intron 5 of 11) intron (NM_014820, intron 5 of 11) 20014 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 199.75-40 chr7 109428583 109429147 + 1 NA Intergenic Intergenic 531348 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 153.25-29 chr2 164528660 164529065 + 1 NA intron (NM_004490, intron 3 of 13) L1MB3|LINE|L1 39633 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 131.5-100 chrX 124559145 124559372 + 1 NA intron (NM_014253, intron 14 of 30) intron (NM_014253, intron 14 of 30) 212976 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 180.25-17 chr14 63032838 63033144 + 1 NA intron (NM_139318, intron 1 of 10) L2a|LINE|L2 12467 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 191.5-13 chr11 91025393 91025634 + 1 NA Intergenic L1MEf|LINE|L1 -156311 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 122.5-69 chr5 29308406 29308557 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 87495 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 216.75-7 chr1 247642676 247643009 + 1 NA Intergenic Intergenic 30199 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 119.75-71 chr5 111859750 111859898 + 1 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -52684 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 134.5-81 chr6 35161356 35161577 + 1 NA Intergenic Intergenic -20056 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 198.5-23 chr2 72198426 72198809 + 1 NA intron (NR_135773, intron 19 of 21) MIRb|SINE|MIR -50755 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 175.25-57 chr8 117222722 117222981 + 1 NA Intergenic Intergenic 87856 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 138.5-52 chr18 66251716 66251959 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 352253 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 192.25-15 chr11 108763757 108764013 + 1 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 98816 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 225.25-8 chr18 5448878 5449210 + 1 NA intron (NM_001281535, intron 5 of 21) L1MC2|LINE|L1 91512 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 193.5-3 chr1 115193415 115193787 + 1 NA Intergenic Intergenic -89433 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 349.5-3 chr18 50040493 50040922 + 1 NA intron (NM_001080467, intron 2 of 39) intron (NM_001080467, intron 2 of 39) 85856 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 174.5-75 chr7 106282833 106283150 + 1 NA intron (NM_005746, intron 1 of 10) intron (NM_005746, intron 1 of 10) 1992 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 191.5-62 chr7 3361719 3362036 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 60625 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 181.25-15 chr14 66140284 66140577 + 1 NA Intergenic L2-3_Crp|LINE|L2 -345941 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 153.5-15 chr10 103914937 103915126 + 1 NA intron (NM_024928, intron 2 of 9) MER21C|LTR|ERVL 3153 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 237.25-30 chr8 91480257 91480650 + 1 NA Intergenic Intergenic 231134 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 156.25-69 chr8 19414687 19414944 + 1 NA intron (NR_148900, intron 7 of 9) intron (NR_148900, intron 7 of 9) 100839 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 141.5-43 chr16 86331051 86331366 + 1 NA TTS (NR_024406) TTS (NR_024406) 14471 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 171.5-88 chr7 71897368 71897622 + 1 NA intron (NM_001363460, intron 4 of 5) L1MEg|LINE|L1 439896 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 230.25-15 chr20 6994371 6994834 + 1 NA Intergenic Intergenic 226916 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 183.75-24 chr16 12214467 12214664 + 1 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 237831 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 183.5-35 chr2 17967440 17967661 + 1 NA Intergenic Intergenic 88883 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 183.75-8 chr10 115260318 115260632 + 1 NA intron (NM_207303, intron 10 of 28) L1MEd|LINE|L1 167110 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 199.5-24 chr17 72182760 72183125 + 1 NA Intergenic Intergenic 61922 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 135.5-42 chr16 56818447 56818651 + 1 NA intron (NM_014669, intron 5 of 21) intron (NM_014669, intron 5 of 21) 35093 NM_001242796 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 151.25-32 chr2 145533636 145533934 + 1 NA Intergenic Intergenic 865818 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 134.25-92 chr8 30000105 30000304 + 1 NA Intergenic Intergenic -42856 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 179.5-49 chr17 78226664 78226961 + 1 NA Intergenic L2a|LINE|L2 -4481 NM_001204212 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 118.5-65 chr22 19382140 19382306 + 1 NA intron (NM_003325, intron 13 of 24) intron (NM_003325, intron 13 of 24) 49510 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 187.75-31 chr3 54968367 54968748 + 1 NA intron (NM_018398, intron 28 of 37) intron (NM_018398, intron 28 of 37) -1455 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 200.5-62 chr8 59921388 59921700 + 1 NA Intergenic Intergenic 359856 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 127.75-95 chr8 60820337 60820541 + 1 NA intron (NM_017780, intron 9 of 37) intron (NM_017780, intron 9 of 37) 79180 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 128.75-31 chr18 1578323 1578573 + 1 NA Intergenic Intergenic -218819 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 202.5-49 chr6 126000242 126000511 + 1 NA intron (NM_001031712, intron 7 of 12) intron (NM_001031712, intron 7 of 12) 13836 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 143.75-73 chr6 75649810 75649967 + 1 NA intron (NM_001100409, intron 6 of 22) L1MC4a|LINE|L1 48008 NM_001100409 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 216.25-35 chr7 7732532 7732772 + 1 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -14045 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 155.25-56 chr5 116960834 116961091 + 1 NA Intergenic Intergenic -198753 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 178.5-43 chr22 50400470 50400788 + 1 NA intron (NM_001351648, intron 3 of 22) intron (NM_001351648, intron 3 of 22) -6813 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 189.5-13 chr13 92329986 92330226 + 1 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 22101 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 160.25-56 chr8 117324844 117325148 + 1 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 190001 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 151.5-28 chr14 60823309 60823527 + 1 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 88657 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 157.75-20 chr11 132905488 132905699 + 1 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 38044 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 141.5-75 chr3 59073362 59073571 + 1 NA Intergenic Intergenic -23434 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 118.25-29 chr14 55734616 55734826 + 1 NA Intergenic Intergenic -31524 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 139.5-101 chr7 126961892 126962141 + 1 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 96168 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 195.75-4 chr10 29253569 29253787 + 1 NA Intergenic Intergenic -35392 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 122.25-40 chr18 9242010 9242145 + 1 NA intron (NM_001204056, intron 7 of 11) intron (NM_001204056, intron 7 of 11) -92696 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 260.5-23 chr3 166037601 166038004 + 1 NA Intergenic Intergenic -200379 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 231.75-24 chr3 172399710 172400228 + 1 NA 3' UTR (NM_022763, exon 26 of 26) 3' UTR (NM_022763, exon 26 of 26) 48487 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 155.5-67 chr21 27252651 27252830 + 1 NA Intergenic Intergenic -285652 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 239.25-14 chr17 15268916 15269261 + 1 NA Intergenic Intergenic -3762 NM_001281456 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 174.5-55 chr3 67857623 67857924 + 1 NA intron (NR_109992, intron 5 of 6) MIRc|SINE|MIR -133819 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 126.5-32 chr14 34326372 34326583 + 1 NA Intergenic Intergenic 135763 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 120.25-13 chr10 101279192 101279416 + 1 NA Intergenic L1ME3|LINE|L1 -15754 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 148.25-41 chr2 236061166 236061460 + 1 NA intron (NM_001037131, intron 16 of 17) L1MB7|LINE|L1 107073 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 114.25-57 chr2 89835324 89835447 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -197478 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 185.5-10 chr10 69682420 69682647 + 1 NA Intergenic Intergenic 52286 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 192.5-14 chr12 41826864 41827139 + 1 NA Intergenic Intergenic 62812 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 353.75-6 chr3 118158344 118158899 + 1 NA Intergenic THE1C-int|LTR|ERVL-MaLR -467696 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 147.5-7 chr1 210327086 210327383 + 1 NA Intergenic MER53|DNA|hAT -1018 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 161.25-23 chr14 67096728 67097123 + 1 NA intron (NM_001024218, intron 11 of 21) intron (NM_001024218, intron 11 of 21) -92515 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 144.75-70 chr5 132593372 132593542 + 1 NA intron (NM_005732, intron 11 of 24) intron (NM_005732, intron 11 of 24) 36480 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 165.5-45 chr2 43009458 43009783 + 1 NA Intergenic MER1A|DNA|hAT-Charlie 29923 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 149.5-94 chr6 75615860 75616114 + 1 NA intron (NM_001100409, intron 1 of 22) HAL1|LINE|L1 14107 NM_001100409 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 133.5-62 chr3 33253337 33253513 + 1 NA Intergenic L1MB8|LINE|L1 -23600 NR_146121 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 141.5 chr1 13905161 13905356 + 1 NA Intergenic L1MEd|LINE|L1 155843 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 167.5-49 chr22 38675839 38676042 + 1 NA Intergenic L2|LINE|L2 -6017 NM_020243 56993 Hs.595072 NM_020243 ENSG00000100216 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 protein-coding 320.5-10 chr21 29719733 29720310 + 1 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -28154 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 168.25-51 chr5 80521641 80521843 + 1 NA intron (NM_205548, intron 4 of 5) intron (NM_205548, intron 4 of 5) 33642 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 224.75-12 chr2 146097057 146097462 + 1 NA Intergenic Intergenic -489798 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 156.75-24 chr13 65249274 65249607 + 1 NA Intergenic Intergenic -616607 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 174.5-20 chr12 55376882 55377164 + 1 NA Intergenic Intergenic 11912 NM_001005497 390323 Hs.554554 NM_001005497 ENSG00000187857 OR6C75 - olfactory receptor family 6 subfamily C member 75 protein-coding 158.25-56 chr5 173555021 173555248 + 1 NA Intergenic Intergenic -24500 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 147.5-70 chr5 78978892 78979094 + 1 NA intron (NM_198709, intron 2 of 7) L1MB5|LINE|L1 6317 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 177.75-40 chr4 113850721 113850938 + 1 NA Intergenic Intergenic -88902 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 149.5-74 chr4 30606707 30607111 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -113460 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 166.25-31 chr2 109085808 109086171 + 1 NA Intergenic L1MB3|LINE|L1 -43216 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 203.5-13 chr14 26198198 26198546 + 1 NA Intergenic Intergenic 355058 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 213.5-45 chr7 9214515 9214789 + 1 NA Intergenic L1MCb|LINE|L1 -419618 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 333.25-2 chr20 5299525 5299899 + 1 NA Intergenic AluSx|SINE|Alu 17020 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 137.5-61 chr2 149690860 149691027 + 1 NA intron (NR_110240, intron 1 of 2) MLT1E2|LTR|ERVL-MaLR -103168 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 269.25-6 chr16 68994049 68994403 + 1 NA intron (NM_024562, intron 15 of 17) intron (NM_024562, intron 15 of 17) -111427 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 131.75-67 chr6 38842520 38842691 + 1 NA intron (NM_001371, intron 33 of 91) intron (NM_001371, intron 33 of 91) 110502 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 119.5-129 chrX 74059883 74060050 + 1 NA intron (NR_028379, intron 5 of 6) HERVL74-int|LTR|ERVL 115642 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 223.5-3 chr1 33550831 33551109 + 1 NA intron (NM_052896, intron 54 of 69) intron (NM_052896, intron 54 of 69) 78325 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 179.5-20 chr11 94279384 94279652 + 1 NA Intergenic Intergenic -26119 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 195.5-40 chr2 4717856 4718225 + 1 NA Intergenic L1MA4|LINE|L1 -61818 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 181.5-76 chr8 121261442 121261795 + 1 NA Intergenic Intergenic -377728 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 121.25-27 chr16 36166793 36167016 + 1 NA Intergenic Intergenic 420352 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 212.5-7 chr11 15769024 15769356 + 1 NA Intergenic Intergenic 125305 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 190.5-32 chr18 61625569 61625804 + 1 NA Intergenic MER4E1|LTR|ERV1 -122490 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 137.25-62 chr5 20414398 20414580 + 1 NA intron (NM_001349558, intron 1 of 15) L1PA17|LINE|L1 108938 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 231.5-52 chr9 74301006 74301253 + 1 NA Intergenic L1ME2z|LINE|L1 -70402 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 167.5-76 chr6 138803504 138803806 + 1 NA intron (NM_001195037, intron 1 of 20) intron (NM_001195037, intron 1 of 20) 7544 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 151.75-49 chr2 216481765 216482008 + 1 NA intron (NM_001127207, intron 17 of 17) intron (NM_001127207, intron 17 of 17) -16958 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 120.25-28 chr15 95531514 95531722 + 1 NA Intergenic Intergenic 98525 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 127.5-54 chr2 12359885 12360270 + 1 NA intron (NR_110196, intron 4 of 5) AluSz|SINE|Alu 160947 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 223.75-25 chr8 17115526 17115930 + 1 NA intron (NR_146233, intron 13 of 15) intron (NR_146233, intron 13 of 15) -40754 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 153.75-9 chr1 198907779 198908031 + 1 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 29524 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 205.25-38 chr6 64527402 64527808 + 1 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 720769 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 248.25-30 chr6 87236532 87237113 + 1 NA intron (NM_015021, intron 5 of 7) L1ME3G|LINE|L1 81257 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 194.25-4 chr1 241885109 241885442 + 1 NA intron (NM_001319224, intron 13 of 14) intron (NM_001319224, intron 13 of 14) 36544 NM_003686 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 188.5-26 chr2 57981632 57981852 + 1 NA intron (NM_001288838, intron 1 of 15) L1PA15|LINE|L1 -64900 NM_006296 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 164.75-31 chr19 50005383 50005603 + 1 NA intron (NM_016440, intron 5 of 14) MIR|SINE|MIR 19879 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 157.5-46 chr2 75065761 75066134 + 1 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -24865 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 167.25-69 chr6 21194002 21194204 + 1 NA intron (NM_017774, intron 13 of 15) MSTD|LTR|ERVL-MaLR 317789 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 284.75-11 chr5 65091538 65091930 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR 322804 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 169.5-90 chr9 84951252 84951700 + 1 NA intron (NM_001018064, intron 15 of 17) intron (NM_001018064, intron 15 of 17) 245575 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 198.5-55 chr8 119569841 119570206 + 1 NA intron (NM_001330600, intron 21 of 25) AluSx|SINE|Alu 22985 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 283.5-24 chr7 87900424 87900867 + 1 NA intron (NM_001318061, intron 9 of 11) intron (NM_001318061, intron 9 of 11) 24152 NM_001318061 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 156.25-60 chr5 40221744 40221923 + 1 NA Intergenic L2b|LINE|L2 169542 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 146.5-65 chr4 26747448 26747648 + 1 NA intron (NM_001292054, intron 15 of 17) intron (NM_001292054, intron 15 of 17) 112696 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 170.75-51 chr4 116167319 116167698 + 1 NA Intergenic L1MC2|LINE|L1 -132217 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 165.25-11 chr11 80166671 80167034 + 1 NA Intergenic Intergenic 595951 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 113.25-111 chr8 19434385 19434523 + 1 NA intron (NM_001130518, intron 6 of 9) L1MC4|LINE|L1 120478 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 207.5-31 chr2 152671030 152671386 + 1 NA intron (NM_001365601, intron 13 of 24) intron (NM_001365601, intron 13 of 24) 46253 NM_001365601 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 136.5-108 chr8 122311338 122311538 + 1 NA Intergenic Intergenic 257206 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 240.5-7 chr1 232559771 232560134 + 1 NA Intergenic Intergenic -44344 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 170.75-2 chr1 11391790 11392081 + 1 NA Intergenic Intergenic -87220 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 293.75-11 chr4 72108529 72108944 + 1 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 69604 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 153.5-81 chr6 25123049 25123269 + 1 NA intron (NR_027626, intron 2 of 6) intron (NR_027626, intron 2 of 6) 14664 NR_002174 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 245.5-6 chr12 86843405 86843857 + 1 NA Intergenic L1MB3|LINE|L1 -4631 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 221.5-2 chr1 61956369 61956781 + 1 NA intron (NM_001350145, intron 27 of 43) intron (NM_001350145, intron 27 of 43) 110500 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 183.25-53 chr8 51415917 51416148 + 1 NA intron (NM_144651, intron 14 of 22) intron (NM_144651, intron 14 of 22) 393413 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 118.25-53 chr20 8500378 8500660 + 1 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 251815 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 322.75 chr10 23725704 23726216 + 1 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 31233 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 152.5-79 chr4 22771307 22771607 + 1 NA intron (NR_102357, intron 4 of 4) intron (NR_102357, intron 4 of 4) 57368 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 218.25-38 chr5 167331576 167332070 + 1 NA intron (NM_001122679, intron 2 of 29) intron (NM_001122679, intron 2 of 29) -163422 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 240.5-16 chr13 64261339 64261650 + 1 NA Intergenic Intergenic -185483 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 128.5-26 chr14 84172739 84172879 + 1 NA Intergenic tRNA-Leu-TTA(m)|tRNA|tRNA -1099123 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 188.5-35 chr22 36717142 36717371 + 1 NA intron (NR_134623, intron 1 of 3) AluJo|SINE|Alu 13380 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 283.25-12 chr5 39176605 39176967 + 1 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 42777 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 207.25-15 chr2 151343627 151343990 + 1 NA intron (NR_110248, intron 2 of 2) AluYm1|SINE|Alu -13784 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 167.25-59 chr5 22818036 22818308 + 1 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 35172 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 158.75-26 chr17 48334412 48334583 + 1 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 40150 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 127.5-3 chr1 34190459 34190627 + 1 NA intron (NM_001134734, intron 1 of 6) L2c|LINE|L2 13636 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 203.75-5 chr13 30076513 30076892 + 1 NA Intergenic AluSx|SINE|Alu 32173 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 117.75-20 chr13 57749960 57750089 + 1 NA Intergenic L2a|LINE|L2 118280 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 197.5-6 chr10 36495886 36496201 + 1 NA Intergenic Intergenic -629814 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 225.5-38 chr4 147234558 147234896 + 1 NA Intergenic Intergenic 109990 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 117.75-9 chr10 53134625 53134889 + 1 NA Intergenic Intergenic -363057 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 129.5-88 chr8 113803856 113804042 + 1 NA Intergenic L1MB1|LINE|L1 -367010 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185.25-49 chr7 101157178 101157466 + 1 NA intron (NM_001283, intron 2 of 4) intron (NM_001283, intron 2 of 4) -2151 NR_039797 100616117 NR_039797 ENSG00000264425 MIR4653 - microRNA 4653 ncRNA 299.75-10 chr9 105523769 105524345 + 1 NA non-coding (NR_104269, exon 1 of 1) non-coding (NR_104269, exon 1 of 1) 4233 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 146.75-52 chr6 67979587 67979784 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -75666 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 195.25-47 chr8 85864792 85865146 + 1 NA Intergenic Intergenic -37027 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 196.25-30 chr2 35965712 35965921 + 1 NA Intergenic MLT2B1|LTR|ERVL 389754 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 181.25-6 chr10 82959793 82959999 + 1 NA intron (NR_163253, intron 8 of 10) intron (NR_163253, intron 8 of 10) 717193 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 130.25-65 chr4 34339750 34339902 + 1 NA Intergenic Intergenic -70079 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 165.5-83 chr7 49694622 49694914 + 1 NA Intergenic Intergenic -78870 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 188.5-19 chr15 101344744 101344954 + 1 NA intron (NM_002570, intron 13 of 21) AluSz|SINE|Alu 10412 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 154.75-22 chr17 12653137 12653406 + 1 NA Intergenic Intergenic -12619 NM_153604 93649 Hs.462257 NM_153604 ENSG00000141052 MYOCD MYCD myocardin protein-coding 113.5-109 chr6 157285818 157285987 + 1 NA Intergenic Intergenic 38357 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 153.75-7 chr1 178943180 178943502 + 1 NA Intergenic Intergenic -72264 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 139.75-28 chr14 60140255 60140546 + 1 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 24998 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 239.5-19 chr4 52931051 52931371 + 1 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 68894 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 209.75-34 chr5 120703978 120704430 + 1 NA Intergenic Intergenic 172740 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 239.5-6 chr12 82072110 82072466 + 1 NA Intergenic L1MC3|LINE|L1 118569 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 200.75-40 chr7 90920241 90920622 + 1 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 210615 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 136.75-22 chr12 72195513 72195810 + 1 NA Intergenic L1PA16|LINE|L1 -77088 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 125.5-132 chr9 81599297 81599477 + 1 NA intron (NM_005077, intron 14 of 19) intron (NM_005077, intron 14 of 19) 90148 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 180.5-23 chr12 68378781 68379129 + 1 NA Intergenic Intergenic -46541 NM_001205028 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 126.5-117 chr8 100091419 100091678 + 1 NA intron (NM_015668, intron 3 of 27) intron (NM_015668, intron 3 of 27) 14078 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 117.5-93 chr8 74169858 74170061 + 1 NA Intergenic Intergenic 151402 NM_001363050 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 138.5-112 chr9 107956168 107956356 + 1 NA Intergenic Intergenic -466493 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 173.5-60 chr21 34838005 34838314 + 1 NA intron (NM_001001890, intron 3 of 5) intron (NM_001001890, intron 3 of 5) 50540 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 190.25-46 chr5 129861621 129861837 + 1 NA Intergenic Intergenic -42736 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 423.5-4 chr4 64516339 64517195 + 1 NA Intergenic Intergenic -107307 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 249.75-26 chr9 27502232 27502558 + 1 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -21919 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 359.5-7 chr5 60294496 60295097 + 1 NA intron (NM_001364599, intron 1 of 16) L1ME2|LINE|L1 77867 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 199.5-32 chr22 25438379 25438598 + 1 NA Intergenic AluSx|SINE|Alu -9599 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 189.5-11 chr12 119523304 119523603 + 1 NA intron (NM_178499, intron 10 of 13) intron (NM_178499, intron 10 of 13) -70321 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 171.75-20 chr16 14233089 14233405 + 1 NA intron (NM_001308142, intron 8 of 16) intron (NM_001308142, intron 8 of 16) 46561 NM_001365414 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 127.75-59 chr4 30730706 30730943 + 1 NA 3' UTR (NM_002589, exon 2 of 2) 3' UTR (NM_002589, exon 2 of 2) 10455 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 167.25-9 chr1 181037880 181038143 + 1 NA intron (NM_001310213, intron 3 of 6) L2a|LINE|L2 4586 NM_001195000 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 114.25-111 chr8 114144529 114144815 + 1 NA Intergenic L1PA14|LINE|L1 -707733 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 199.5-51 chr7 11968424 11968804 + 1 NA Intergenic Intergenic -136416 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 120.5-15 chr10 122002063 122002291 + 1 NA intron (NM_206862, intron 1 of 22) MLT1A0|LTR|ERVL-MaLR 13014 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 226.5-35 chr20 59704683 59705018 + 1 NA intron (NM_001199506, intron 1 of 12) L1M5|LINE|L1 -16360 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 143.25-37 chr2 160341901 160342281 + 1 NA intron (NM_002897, intron 2 of 13) intron (NM_002897, intron 2 of 13) 65791 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 146.25-51 chr3 47379982 47380245 + 1 NA promoter-TSS (NM_001304482) promoter-TSS (NM_001304482) -908 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 128.5-97 chr8 105969150 105969293 + 1 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 91282 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 191.25-46 chr4 30560618 30561156 + 1 NA Intergenic L2c|LINE|L2 -159482 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 126.75-50 chr2 236306380 236306513 + 1 NA Intergenic Intergenic -42101 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 195.5-68 chr4 115348691 115348976 + 1 NA Intergenic Intergenic -235213 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 156.75-93 chr9 79923804 79924049 + 1 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -51097 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 187.5-12 chr11 76766186 76766570 + 1 NA Intergenic Intergenic -15935 NM_001258210 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 160.5-53 chr3 171070521 171070722 + 1 NA intron (NM_001161563, intron 28 of 31) intron (NM_001161563, intron 28 of 31) 36138 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 155.75-66 chr7 38948431 38948777 + 1 NA Intergenic L1M5|LINE|L1 -29305 NM_007252 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 119.5-91 chr4 108248530 108248651 + 1 NA Intergenic Intergenic 76470 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 148.25-33 chr2 38500579 38500831 + 1 NA intron (NR_110259, intron 1 of 4) L2c|LINE|L2 15035 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 188.5-2 chr1 59951178 59951397 + 1 NA Intergenic Intergenic -24489 NR_134981 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 214.5-29 chr20 17467896 17468502 + 1 NA intron (NM_002594, intron 11 of 11) intron (NM_002594, intron 11 of 11) 63180 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 265.75-5 chr12 88135720 88136081 + 1 NA intron (NM_025114, intron 6 of 53) A-rich|Low_complexity|Low_complexity 6316 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 132.5-120 chr9 105148828 105149042 + 1 NA Intergenic LTR16A|LTR|ERVL -95670 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 131.75-11 chr10 127546965 127547150 + 1 NA Intergenic HAL1|LINE|L1 -2292 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 168.5-35 chr17 74434167 74434500 + 1 NA intron (NM_018653, intron 1 of 3) intron (NM_018653, intron 1 of 3) 636 NM_018653 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 161.75-52 chr7 18941437 18941882 + 1 NA intron (NM_058176, intron 22 of 22) intron (NM_058176, intron 22 of 22) 175977 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 115.5-49 chr2 176905056 176905235 + 1 NA Intergenic Intergenic 267391 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 153.5-23 chr11 125843673 125843912 + 1 NA Intergenic Intergenic 10476 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 262.5-2 chr1 45390185 45390563 + 1 NA intron (NM_007170, intron 3 of 10) AluJb|SINE|Alu -49904 NR_146882 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 123.25-3 chr1 87978384 87978678 + 1 NA Intergenic Intergenic -606876 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 129.75-8 chr1 241461049 241461182 + 1 NA Intergenic AluSq2|SINE|Alu 58670 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 261.75-18 chr22 20816847 20817162 + 1 NA intron (NM_058004, intron 7 of 54) intron (NM_058004, intron 7 of 54) 41807 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 197.5-21 chr14 75074918 75075291 + 1 NA intron (NM_024643, intron 2 of 2) HAL1|LINE|L1 5463 NM_001330191 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 204.5-49 chr5 99320718 99321189 + 1 NA Intergenic Intergenic -213037 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 133.5-10 chr10 10004480 10004691 + 1 NA Intergenic MIRb|SINE|MIR -54137 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 147.25-2 chr1 230405282 230405642 + 1 NA intron (NM_001258311, intron 1 of 6) Tigger2a|DNA|TcMar-Tigger 20870 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 165.5-66 chr4 55439803 55440146 + 1 NA intron (NM_004898, intron 21 of 22) L1MB3|LINE|L1 44017 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 126.5-23 chr11 83854660 83854843 + 1 NA intron (NM_001142699, intron 16 of 27) L1MC1|LINE|L1 -172326 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 128.25-31 chr2 49458822 49459207 + 1 NA Intergenic MIRb|SINE|MIR -304487 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 131.75-55 chr3 150465191 150465353 + 1 NA non-coding (NR_130136, exon 5 of 5) non-coding (NR_130136, exon 5 of 5) 56974 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 239.75-29 chr7 81156994 81157408 + 1 NA Intergenic Intergenic -234812 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 149.25-26 chr15 79891266 79891556 + 1 NA intron (NM_001199760, intron 2 of 3) HAL1ME|LINE|L1 5586 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 127.75-35 chr15 87209125 87209326 + 1 NA Intergenic L2c|LINE|L2 -220799 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 118.25-108 chr8 84928189 84928334 + 1 NA Intergenic Intergenic -178977 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 151.5-75 chr6 93170792 93170992 + 1 NA Intergenic Intergenic 248667 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 178.25-52 chr6 20454956 20455195 + 1 NA intron (NM_001243076, intron 1 of 6) intron (NM_001243076, intron 1 of 6) 51396 NM_001243076 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 125.75-72 chr8 81053772 81054000 + 1 NA intron (NM_018440, intron 2 of 8) MER58A|DNA|hAT-Charlie 58182 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 178.5-71 chr7 22202757 22203028 + 1 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -8082 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 119.25-17 chr12 42537202 42537502 + 1 NA intron (NM_153026, intron 1 of 7) AluJo|SINE|Alu 52394 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 126.75-73 chr5 82700620 82700857 + 1 NA Intergenic Intergenic -139417 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 177.75-52 chr6 98494139 98494346 + 1 NA Intergenic L1ME4b|LINE|L1 337458 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 128.5-77 chr5 98480827 98481176 + 1 NA Intergenic Intergenic -287631 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 177.75-58 chr8 19003934 19004236 + 1 NA intron (NM_015310, intron 1 of 15) intron (NM_015310, intron 1 of 15) 9618 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 205.5-55 chr7 111285818 111286125 + 1 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 194844 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 175.25-2 chr1 36245516 36245906 + 1 NA intron (NM_001321471, intron 2 of 12) intron (NM_001321471, intron 2 of 12) 21268 NM_001321473 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 BCLAF2|TRAP150 thyroid hormone receptor associated protein 3 protein-coding 135.5-5 chr1 213930723 213930932 + 1 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 6078 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 135.5-100 chr7 125849514 125849777 + 1 NA Intergenic Intergenic -585354 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 219.75-44 chr8 27940126 27940521 + 1 NA intron (NM_173833, intron 3 of 8) intron (NM_173833, intron 3 of 8) 52350 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 249.25-10 chr17 70680537 70680881 + 1 NA Intergenic Intergenic 511174 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 159.5-12 chr10 18925210 18925439 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -123477 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 219.5-22 chr18 942260 942689 + 1 NA Intergenic Intergenic -14481 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 184.75-13 chr11 42502659 42503039 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -249159 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 201.25-9 chr12 41101249 41101559 + 1 NA Intergenic MIR|SINE|MIR -86916 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 184.5-52 chr3 104177485 104177886 + 1 NA Intergenic L1PREC2|LINE|L1 -653569 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 226.5-33 chr20 17213158 17213571 + 1 NA Intergenic Intergenic -12743 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 140.5-44 chr2 101415860 101416057 + 1 NA intron (NM_001145664, intron 6 of 11) L2b|LINE|L2 -28455 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 145.5-47 chr2 69365683 69365984 + 1 NA intron (NM_002056, intron 3 of 18) AluSq2|SINE|Alu 21394 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 122.5-79 chr6 12989333 12989567 + 1 NA intron (NM_001322313, intron 1 of 12) intron (NM_001322313, intron 1 of 12) -24104 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 120.5-107 chr8 110268420 110268600 + 1 NA Intergenic Intergenic -292739 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 277.25-2 chr1 52472555 52473022 + 1 NA intron (NM_001009881, intron 13 of 29) intron (NM_001009881, intron 13 of 29) 68186 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 240.75-5 chr10 132836878 132837130 + 1 NA intron (NM_001200049, intron 44 of 57) intron (NM_001200049, intron 44 of 57) -50857 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 218.75-25 chr3 171682155 171682562 + 1 NA intron (NM_001130081, intron 15 of 25) intron (NM_001130081, intron 15 of 25) 128125 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 169.25-36 chr3 89307051 89307288 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 199548 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 150.25-63 chr5 120391350 120391526 + 1 NA Intergenic Intergenic -72840 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 215.25-30 chr5 92377772 92378095 + 1 NA Intergenic Intergenic -994616 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 143.5-61 chr21 31961420 31961625 + 1 NA intron (NM_014586, intron 5 of 10) L1MD2|LINE|L1 88502 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 193.5-36 chr22 31444141 31444434 + 1 NA intron (NM_001164502, intron 13 of 16) intron (NM_001164502, intron 13 of 16) 44683 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 160.75-47 chr4 155432462 155432705 + 1 NA Intergenic Intergenic -55618 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 131.5-74 chr5 29362786 29362990 + 1 NA Intergenic Intergenic 33088 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 172.25-41 chr20 52928934 52929165 + 1 NA Intergenic Intergenic -43309 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 180.25-11 chr11 117929605 117930072 + 1 NA promoter-TSS (NM_001244995) promoter-TSS (NM_001244995) -385 NM_001206790 84000 Hs.266308 NM_032046 ENSG00000137747 TMPRSS13 MSP|MSPL|MSPS|TMPRSS11 transmembrane serine protease 13 protein-coding 125.5-58 chr18 75229910 75230141 + 1 NA intron (NM_001308210, intron 1 of 1) intron (NM_001308210, intron 1 of 1) 18496 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 255.25-2 chr10 43750473 43750820 + 1 NA Intergenic L1MB3|LINE|L1 28179 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 260.25-21 chr7 38559459 38559891 + 1 NA intron (NM_001635, intron 1 of 20) MIRb|SINE|MIR 71698 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 173.5-34 chr17 67589000 67589228 + 1 NA intron (NM_181671, intron 5 of 9) intron (NM_181671, intron 5 of 9) -117529 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 131.75-18 chr11 115275407 115275709 + 1 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -58019 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 158.5-54 chr2 46028438 46028661 + 1 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -268858 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 164.75-38 chr2 222345958 222346241 + 1 NA intron (NR_136642, intron 2 of 3) AluSx|SINE|Alu 25438 NR_136639 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 148.5-94 chr6 130200031 130200187 + 1 NA intron (NM_001277185, intron 4 of 10) intron (NM_001277185, intron 4 of 10) 15776 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 118.75-64 chr21 28371381 28371530 + 1 NA Intergenic L1MA3|LINE|L1 -142788 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 134.5-101 chr9 15438292 15438556 + 1 NA intron (NR_161450, intron 3 of 7) L1MB4|LINE|L1 15548 NR_161440 6619 Hs.546299 NM_003084 ENSG00000164975 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex polypeptide 3 protein-coding 202.25-7 chr10 98094910 98095247 + 1 NA Intergenic Intergenic -39546 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 116.5-18 chr11 56878790 56879011 + 1 NA TTS (NR_110137) TTS (NR_110137) 30422 NR_110137 101927120 Hs.472675 NR_110136 ENSG00000255433 LINC02735 - long intergenic non-protein coding RNA 2735 ncRNA 118.75-71 chr3 85346528 85346700 + 1 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -39096 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 182.25-41 chr4 85552431 85552713 + 1 NA intron (NM_001025616, intron 1 of 9) L1PREC2|LINE|L1 77422 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 125.5-79 chr3 61491126 61491356 + 1 NA Intergenic Intergenic -70330 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 181.5-29 chr18 10937131 10937507 + 1 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -177670 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 158.5-61 chr20 58600797 58601069 + 1 NA intron (NR_034147, intron 6 of 6) L1MB8|LINE|L1 -33839 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 180.5-6 chr10 17997766 17998099 + 1 NA intron (NM_001282734, intron 9 of 11) intron (NM_001282734, intron 9 of 11) 12630 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 290.25-4 chr11 47472556 47472872 + 1 NA intron (NM_198700, intron 12 of 13) AluJo|SINE|Alu 16310 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 147.5-15 chr11 78890172 78890499 + 1 NA intron (NM_001098816, intron 8 of 33) intron (NM_001098816, intron 8 of 33) -315471 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 192.5-25 chr18 13601171 13601486 + 1 NA intron (NM_181482, intron 4 of 5) L1PA17|LINE|L1 -9786 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 213.75-32 chr21 30573561 30573814 + 1 NA Intergenic Intergenic -12374 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 149.25-60 chr7 81821235 81821453 + 1 NA Intergenic L1MA9|LINE|L1 -51297 NM_001010932 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 254.5-30 chr6 137452380 137452807 + 1 NA Intergenic Intergenic 41801 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 136.25-36 chr16 78941500 78941758 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 659108 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 127.25-11 chr10 35692494 35692705 + 1 NA Intergenic Intergenic -51165 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 127.25-82 chr6 21329206 21329353 + 1 NA Intergenic MER39|LTR|ERV1 182613 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 115.75-79 chr5 89225389 89225520 + 1 NA intron (NR_136219, intron 7 of 9) L1MB7|LINE|L1 -321349 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 179.5-62 chr3 11649564 11649830 + 1 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) -5782 NM_001128219 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 209.75-23 chr2 219378276 219378723 + 1 NA intron (NM_001319121, intron 14 of 15) MIRc|SINE|MIR 8863 NM_001319118 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 186.5-18 chr13 44347534 44347833 + 1 NA Intergenic Intergenic -25967 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 165.75-17 chr12 76890509 76890747 + 1 NA Intergenic Tigger12|DNA|TcMar-Tigger -11609 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 262.25-7 chr15 93015753 93016069 + 1 NA intron (NM_001271, intron 37 of 38) L1MA8|LINE|L1 57245 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 199.5-36 chr4 42061494 42061862 + 1 NA intron (NM_006345, intron 10 of 17) AluSp|SINE|Alu 71148 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 215.5-31 chr3 64294597 64295117 + 1 NA Intergenic Intergenic -26684 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 190.75-11 chr10 88198583 88198919 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR 335126 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 169.75-15 chr12 29893520 29893790 + 1 NA Intergenic Intergenic -108896 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 147.25-32 chr2 114935144 114935375 + 1 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -101711 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 172.5-10 chr12 33065772 33066117 + 1 NA Intergenic L1M2|LINE|L1 -169098 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 175.25-58 chr8 122461480 122461758 + 1 NA intron (NR_131202, intron 2 of 3) MIR|SINE|MIR 107025 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 208.5-9 chr11 2227627 2227971 + 1 NA Intergenic L1MCa|LINE|L1 43153 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 124.5-82 chr5 14184125 14184299 + 1 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 40870 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 170.25-42 chr21 14790706 14791101 + 1 NA Intergenic AluJo|SINE|Alu 127765 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 123.25-21 chr13 24884697 24884913 + 1 NA intron (NR_047594, intron 14 of 17) intron (NR_047594, intron 14 of 17) 38056 NR_047594 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 233.5-24 chr18 7032240 7032744 + 1 NA intron (NM_005559, intron 15 of 62) intron (NM_005559, intron 15 of 62) 77815 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 137.5-30 chr14 55276151 55276306 + 1 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 4074 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 153.5-91 chr8 74638282 74638600 + 1 NA intron (NR_033830, intron 2 of 5) L2c|LINE|L2 38575 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 218.5-47 chr7 7446910 7447327 + 1 NA intron (NM_001037763, intron 18 of 34) L1MEc|LINE|L1 88755 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 238.75-16 chr7 3594510 3594903 + 1 NA intron (NM_152744, intron 1 of 44) L1MB8|LINE|L1 293454 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 155.25-4 chr1 244861427 244861701 + 1 NA intron (NM_031844, intron 3 of 13) intron (NM_031844, intron 3 of 13) 2961 NM_004501 3192 Hs.106212 NM_004501 ENSG00000153187 HNRNPU EIEE54|GRIP120|HNRNPU-AS1|HNRPU|SAF-A|SAFA|U21.1|hnRNP U|pp120 heterogeneous nuclear ribonucleoprotein U protein-coding 119.5-22 chr11 59352887 59353084 + 1 NA Intergenic L1M2a|LINE|L1 -11474 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 145.75-72 chr8 110879846 110880033 + 1 NA Intergenic Intergenic 147494 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 141.5-40 chr16 64047670 64047847 + 1 NA Intergenic (CTTC)n|Simple_repeat|Simple_repeat 1074305 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 166.75-29 chr2 37908616 37908880 + 1 NA Intergenic L1MA2|LINE|L1 -16539 NM_001170791 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 182.25-58 chr8 123538969 123539272 + 1 NA intron (NM_058229, intron 1 of 8) AluJr|SINE|Alu 2086 NM_001242463 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 177.5-3 chr1 109673254 109673658 + 1 NA intron (NM_001142368, intron 7 of 8) intron (NM_001142368, intron 7 of 8) 5399 NM_000848 2946 Hs.279837 NM_000848 ENSG00000213366 GSTM2 GST4|GSTM|GSTM2-2|GTHMUS glutathione S-transferase mu 2 protein-coding 132.25-77 chr5 116321385 116321765 + 1 NA Intergenic Intergenic 52995 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 145.25-42 chr2 82581983 82582401 + 1 NA Intergenic Intergenic -274611 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 193.5-77 chr8 135373861 135374197 + 1 NA Intergenic Intergenic -83427 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 137.75-17 chr11 108453914 108454135 + 1 NA intron (NR_147053, intron 3 of 12) L1M2|LINE|L1 13505 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 199.25-33 chr5 131883737 131884040 + 1 NA intron (NM_001303622, intron 8 of 12) L1MA2|LINE|L1 61775 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 134.25-86 chr7 42732227 42732494 + 1 NA Intergenic Intergenic -25913 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 165.5-54 chr20 46834839 46835004 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -59703 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 175.5-19 chr12 18421232 18421596 + 1 NA intron (NM_001288774, intron 17 of 32) intron (NM_001288774, intron 17 of 32) 159874 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 122.5-68 chr5 25794157 25794356 + 1 NA Intergenic LTR57-int|LTR|ERVL 603303 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 249.75-15 chr2 198040185 198040647 + 1 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 235823 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 140.75-39 chr21 15834132 15834352 + 1 NA intron (NM_001283042, intron 17 of 24) intron (NM_001283042, intron 17 of 24) 104260 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 183.5-39 chr2 132475617 132475957 + 1 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 42076 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 128.5-102 chrX 79706677 79706857 + 1 NA Intergenic Intergenic -307986 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 197.25-44 chr3 187423937 187424224 + 1 NA Intergenic L1M5|LINE|L1 -22966 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 187.25-52 chr5 29677544 29677776 + 1 NA Intergenic L1M4|LINE|L1 -202900 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 124.5-86 chr5 167338361 167338545 + 1 NA intron (NM_001122679, intron 2 of 29) MLT1I|LTR|ERVL-MaLR -170052 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 137.5-111 chr8 64339864 64340001 + 1 NA intron (NR_125826, intron 1 of 4) MIR|SINE|MIR 28626 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 188.25-12 chr15 101351593 101351904 + 1 NA intron (NM_138323, intron 13 of 13) intron (NM_138323, intron 13 of 13) 17311 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 137.5-107 chr7 68991247 68991483 + 1 NA Intergenic Intergenic 606259 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 190.25-40 chr4 38117136 38117422 + 1 NA intron (NM_001253912, intron 18 of 20) intron (NM_001253912, intron 18 of 20) -2675 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 169.25-33 chr20 60634313 60634680 + 1 NA Intergenic Intergenic 69934 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 174.75-17 chr13 102220271 102220577 + 1 NA intron (NM_001321943, intron 1 of 5) intron (NM_001321943, intron 1 of 5) 90262 NM_001321932 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 161.25-70 chr6 40012930 40013124 + 1 NA Intergenic L1MA4|LINE|L1 -78565 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 124.5-67 chr3 14462669 14462818 + 1 NA intron (NR_103507, intron 6 of 13) MER4CL34|LTR|ERV1 60137 NM_001134368 6533 Hs.529488 NM_003043 ENSG00000131389 SLC6A6 TAUT solute carrier family 6 member 6 protein-coding 146.75-10 chr11 71471248 71471648 + 1 NA intron (NM_018161, intron 5 of 20) intron (NM_018161, intron 5 of 20) -2055 NR_106812 102466728 NR_106812 ENSG00000278349 MIR6754 hsa-mir-6754 microRNA 6754 ncRNA 210.25-23 chr2 96933342 96933758 + 1 NA intron (NM_001122646, intron 8 of 16) intron (NM_001122646, intron 8 of 16) 14444 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 183.25-25 chr2 212249512 212249773 + 1 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 176718 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 157.25-18 chr12 15150302 15150525 + 1 NA intron (NM_032918, intron 2 of 4) MIRb|SINE|MIR -1510 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 129.5-46 chr2 143777941 143778150 + 1 NA Intergenic Intergenic -159022 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 160.5-30 chr18 9483330 9483562 + 1 NA intron (NM_006788, intron 1 of 9) L1MB8|LINE|L1 7933 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 176.5-43 chr19 42564501 42564763 + 1 NA intron (NR_073180, intron 2 of 2) L2c|LINE|L2 30292 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 164.5-25 chr16 10543079 10543293 + 1 NA intron (NM_001424, intron 3 of 4) intron (NM_001424, intron 3 of 4) -14988 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 165.5-48 chr2 105470315 105470598 + 1 NA Intergenic Intergenic -31943 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 212.75-25 chr5 11481146 11481489 + 1 NA intron (NM_001288715, intron 2 of 20) MER96B|DNA|hAT-Tip100 107600 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 148.75-55 chr5 88237090 88237337 + 1 NA intron (NM_001349403, intron 1 of 10) MLT1J2|LTR|ERVL-MaLR 31632 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 115.5-15 chr11 32442193 32442354 + 1 NA intron (NR_120548, intron 1 of 4) intron (NR_120548, intron 1 of 4) 6234 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 153.5-11 chr10 55905732 55906005 + 1 NA Intergenic Intergenic -277926 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 161.75-5 chr10 105090020 105090291 + 1 NA intron (NM_014978, intron 6 of 26) intron (NM_014978, intron 6 of 26) -423939 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 157.5-28 chr14 63700325 63700557 + 1 NA intron (NM_030791, intron 1 of 2).2 L2|LINE|L2 27624 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 131.5-89 chr7 139854986 139855290 + 1 NA intron (NM_001366537, intron 1 of 11) MSTC|LTR|ERVL-MaLR 25874 NM_030984 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 144.5-94 chr6 18435006 18435281 + 1 NA intron (NM_182757, intron 3 of 7) intron (NM_182757, intron 3 of 7) 47793 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 183.5-44 chr21 34879319 34879666 + 1 NA intron (NM_001001890, intron 2 of 5) intron (NM_001001890, intron 2 of 5) 9207 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 146.5-3 chr1 95796106 95796413 + 1 NA Intergenic Intergenic -195809 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 124.5-40 chr17 15479957 15480193 + 1 NA intron (NM_001204478, intron 5 of 6) intron (NM_001204478, intron 5 of 6) -9239 NR_146601 94145 Hs.697356 NR_146601 CDRT3 - CMT1A duplicated region transcript 3 ncRNA 220.25-17 chr16 54338947 54339245 + 1 NA Intergenic L1MB5|LINE|L1 31362 NR_134924 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 122.5-24 chr13 72036943 72037152 + 1 NA Intergenic Intergenic -169843 NM_001366712 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 169.5-9 chr10 34925939 34926287 + 1 NA Intergenic AluSx|SINE|Alu 110345 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 146.25-34 chr19 56438872 56439146 + 1 NA TTS (NM_001321356) TTS (NM_001321356) 34677 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 166.25-50 chr5 121795094 121795339 + 1 NA Intergenic Intergenic -56666 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 113.25-113 chr8 131807023 131807298 + 1 NA Intergenic L2a|LINE|L2 -96933 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 175.25-6 chr10 54667217 54667430 + 1 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -59366 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 135.5-86 chr5 128826227 128826479 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity -138774 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 134.5-37 chr18 60020407 60020568 + 1 NA Intergenic Intergenic 120491 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 169.5-53 chr3 86117337 86117596 + 1 NA Intergenic ERVL47-int|LTR|ERVL -289416 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 202.75-20 chr4 98537394 98537764 + 1 NA intron (NM_005723, intron 1 of 7) MIR|SINE|MIR 121032 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 201.5-49 chr5 73983272 73983485 + 1 NA Intergenic Intergenic 169832 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 171.5-94 chr9 8393512 8393820 + 1 NA intron (NM_130392, intron 21 of 30) intron (NM_130392, intron 21 of 30) 340280 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 158.5-103 chr8 122557922 122558217 + 1 NA intron (NR_131202, intron 2 of 3) MER1B|DNA|hAT-Charlie 10575 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 153.5-25 chr12 23798210 23798505 + 1 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 151313 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 142.5-68 chr4 117775251 117775496 + 1 NA Intergenic L1MA3|LINE|L1 -59028 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 208.25-31 chr4 166607938 166608475 + 1 NA Intergenic L1MC1|LINE|L1 626220 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 114.5-48 chr2 57224711 57224866 + 1 NA Intergenic Intergenic -682863 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 167.75-9 chr10 89047295 89047505 + 1 NA Intergenic LTR16D|LTR|ERVL -15936 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 207.25-10 chr16 75373965 75374330 + 1 NA intron (NM_006324, intron 5 of 6) AluSx1|SINE|Alu 59356 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 114.75-7 chr10 14897202 14897478 + 1 NA TTS (NR_146960) TTS (NR_146960) 18440 NM_024670 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 228.5-5 chr11 63643279 63643549 + 1 NA exon (NM_001290048, exon 8 of 13) exon (NM_001290048, exon 8 of 13) 27962 NM_015459 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 146.75-42 chr5 8425182 8425460 + 1 NA intron (NR_039984, intron 2 of 5) L1MD1|LINE|L1 32243 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 203.5-29 chr22 32352429 32352710 + 1 NA Intergenic Intergenic -2316 NM_006604 10738 Hs.558455 NM_006604 ENSG00000128276 RFPL3 RNF120 ret finger protein like 3 protein-coding 202.25-32 chr5 36253117 36253445 + 1 NA intron (NM_001323279, intron 11 of 12) intron (NM_001323279, intron 11 of 12) -11002 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 152.25-32 chr2 102116487 102116764 + 1 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) 12021 NM_001320986 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 123.5-47 chr2 22334932 22335166 + 1 NA Intergenic Intergenic -201430 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 143.5-53 chr2 106293985 106294243 + 1 NA Intergenic Intergenic -75631 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 150.75-14 chr14 68992004 68992284 + 1 NA Intergenic Intergenic 12462 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 149.5-18 chr12 12164407 12164676 + 1 NA exon (NM_002336, exon 9 of 23).2 exon (NM_002336, exon 9 of 23).2 52589 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 219.75-27 chr3 116687433 116687880 + 1 NA Intergenic Intergenic -22132 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 167.25-70 chr6 142312818 142313096 + 1 NA intron (NM_198569, intron 2 of 24) Alu|SINE|Alu 10950 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 127.25-3 chr1 80139444 80139618 + 1 NA Intergenic MIRc|SINE|MIR -396224 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 127.5-49 chr18 7952782 7953005 + 1 NA intron (NM_002845, intron 6 of 30) AluSz|SINE|Alu 385577 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 137.5-89 chr4 111375196 111375404 + 1 NA Intergenic Intergenic -514653 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 116.75-43 chr2 114256560 114256858 + 1 NA Intergenic L1MC3|LINE|L1 -185932 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 179.5-37 chr14 81031316 81031731 + 1 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 75902 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 192.25-19 chr14 72005436 72005885 + 1 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 72133 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 231.75-22 chr3 156615812 156616168 + 1 NA Intergenic Intergenic -58600 NM_015508 25976 Hs.744050 NM_015508 ENSG00000163659 TIPARP ARTD14|PARP7|pART14 TCDD inducible poly(ADP-ribose) polymerase protein-coding 160.75-36 chr2 227734879 227735125 + 1 NA Intergenic Intergenic -16974 NM_001371413 226.5-28 chr2 83439904 83440162 + 1 NA Intergenic L1MB8|LINE|L1 -82781 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 150.25-48 chr3 50925170 50925454 + 1 NA intron (NM_004947, intron 4 of 52) intron (NM_004947, intron 4 of 52) 250232 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 174.75-19 chr14 56893383 56893729 + 1 NA intron (NR_146411, intron 2 of 2) MIRb|SINE|MIR 80398 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 144.5-103 chr8 80605105 80605250 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 118951 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 153.5-16 chr10 106536772 106537031 + 1 NA Intergenic Intergenic 396736 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 132.5-75 chr3 83250877 83251020 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR 1264806 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 140.5-79 chr4 145608004 145608208 + 1 NA Intergenic Intergenic -11279 NM_172250 166785 Hs.452864 NM_172250 ENSG00000151611 MMAA cblA metabolism of cobalamin associated A protein-coding 115.25-2 chr1 34890821 34891070 + 1 NA intron (NM_001080418, intron 5 of 11) MLT1J1|LTR|ERVL-MaLR -31196 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 149.25-44 chr3 108881885 108882061 + 1 NA Intergenic L1MD1|LINE|L1 59187 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 191.5-59 chr5 180846487 180846706 + 1 NA Intergenic Intergenic 14690 NM_001172638 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 133.25-78 chr7 106485935 106486179 + 1 NA Intergenic Intergenic 175101 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 188.75-16 chr19 27871276 27871521 + 1 NA intron (NR_146734, intron 1 of 7) L1MC1|LINE|L1 -77458 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 150.25-41 chr2 125941434 125941741 + 1 NA Intergenic Intergenic 176398 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 197.5-26 chr17 39861190 39861409 + 1 NA intron (NM_012481, intron 1 of 7) L2b|LINE|L2 2889 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 136.75-61 chr3 85170640 85170844 + 1 NA intron (NM_001167674, intron 1 of 9) L4_B_Mam|LINE|RTE-X -108478 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 115.75-102 chr9 90799222 90799564 + 1 NA Intergenic L1MC1|LINE|L1 -2207 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 172.5-85 chr8 71767052 71767247 + 1 NA Intergenic Intergenic -75974 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 189.75-7 chr10 125061501 125061791 + 1 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -28776 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 254.5-17 chr21 27831959 27832271 + 1 NA Intergenic Intergenic 109736 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 119.5-111 chr6 169288654 169288827 + 1 NA Intergenic Intergenic -34626 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 121.75-61 chr3 193441773 193441916 + 1 NA intron (NM_032279, intron 19 of 29) intron (NM_032279, intron 19 of 29) -63091 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 163.75-3 chr1 75266075 75266291 + 1 NA intron (NM_001320283, intron 4 of 21) intron (NM_001320283, intron 4 of 21) 131795 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 159.5-47 chr2 220688212 220688418 + 1 NA Intergenic AluJb|SINE|Alu -781750 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 169.25-39 chr3 192497836 192498119 + 1 NA intron (NM_004113, intron 2 of 5) L2a|LINE|L2 -17045 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 237.5-19 chr19 29945745 29946129 + 1 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 3698 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 214.75-39 chr8 112007220 112007515 + 1 NA Intergenic L1PA15|LINE|L1 630728 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 134.25-84 chr7 28454417 28454646 + 1 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 18916 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 164.5-21 chr14 62414237 62414492 + 1 NA Intergenic Intergenic -274391 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 116.5-70 chr2 198691474 198691666 + 1 NA Intergenic Intergenic -316473 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 176.25-2 chr1 3229082 3229419 + 1 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 101275 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 225.25-14 chr2 128179233 128179607 + 1 NA intron (NR_027671, intron 34 of 40) intron (NR_027671, intron 34 of 40) 88220 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 150.5-43 chr2 52163568 52163748 + 1 NA intron (NR_135237, intron 7 of 10) A-rich|Low_complexity|Low_complexity -206990 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 125.5-103 chr5 12652615 12652828 + 1 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -15138 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 152.5-10 chr10 47227749 47228012 + 1 NA Intergenic Intergenic -72317 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 168.5-50 chr20 2774946 2775164 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 25572 NM_019609 56265 Hs.659346 NM_019609 ENSG00000088882 CPXM1 CPX1|CPXM carboxypeptidase X, M14 family member 1 protein-coding 204.5-64 chr8 116294243 116294621 + 1 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 30627 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 119.5-79 chr3 82162080 82162262 + 1 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 176029 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 226.5-47 chr8 14507015 14507375 + 1 NA intron (NM_001322881, intron 2 of 6) L2a|LINE|L2 346315 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 117.25-73 chr4 188800265 188800429 + 1 NA Intergenic Intergenic 23690 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 164.5-30 chr17 78650070 78650345 + 1 NA Intergenic Intergenic -18150 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 130.5-4 chr1 65586764 65586936 + 1 NA intron (NM_001003679, intron 5 of 19) (TACTATA)n|Simple_repeat|Simple_repeat 61161 NM_001198689 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 144.5-62 chr20 38270395 38270565 + 1 NA intron (NR_104170, intron 1 of 1) AluSc5|SINE|Alu -9745 NR_145960 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 155.5-90 chr8 42633602 42633956 + 1 NA Intergenic Intergenic -63587 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 145.75-33 chr2 26977812 26977957 + 1 NA intron (NM_012326, intron 1 of 6) intron (NM_012326, intron 1 of 6) 7247 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 228.25-37 chr8 72211997 72212253 + 1 NA non-coding (NR_033867, exon 16 of 20) non-coding (NR_033867, exon 16 of 20) 39509 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 226.25-4 chr10 83328200 83328521 + 1 NA Intergenic L1MB7|LINE|L1 348729 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 268.75-4 chr1 201606061 201606430 + 1 NA Intergenic Intergenic -42077 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 228.25-14 chr2 19138996 19139260 + 1 NA Intergenic Intergenic -112157 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 196.25-43 chr3 104387425 104387750 + 1 NA Intergenic Intergenic -863471 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 139.5-100 chr7 92968951 92969146 + 1 NA Intergenic L1ME1|LINE|L1 -132421 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 184.75-22 chr14 39553369 39553643 + 1 NA Intergenic Intergenic -121006 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 145.75-57 chr4 19189108 19189363 + 1 NA Intergenic L3b|LINE|CR1 -1062670 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 210.5-52 chr6 92609007 92609270 + 1 NA Intergenic Intergenic 810421 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 178.75-59 chr8 125148994 125149279 + 1 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 57276 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 156.5-29 chr2 12333363 12333558 + 1 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 134330 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 214.25-40 chr6 156526464 156526844 + 1 NA Intergenic Intergenic 147904 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 156.75-96 chrX 134602471 134602656 + 1 NA intron (NM_001316887, intron 2 of 3) intron (NM_001316887, intron 2 of 3) 52539 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 LINC00629A|LINC00629B|LINC00629C|LINC00629D long intergenic non-protein coding RNA 629 ncRNA 117.25-25 chr13 27608232 27608366 + 1 NA intron (NM_153371, intron 1 of 9) intron (NM_153371, intron 1 of 9) 12230 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 157.75-7 chr1 52747565 52747883 + 1 NA intron (NM_024646, intron 1 of 13) intron (NM_024646, intron 1 of 13) 21271 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 182.5-22 chr17 44701166 44701446 + 1 NA Intergenic Intergenic -7359 NR_148206 80174 Hs.369998 NM_025104 ENSG00000161692 DBF4B ASKL1|CHIFB|DRF1|ZDBF1B DBF4 zinc finger B protein-coding 133.5-37 chr15 77826497 77826717 + 1 NA Intergenic MIRc|SINE|MIR -5707 NM_001301186 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 150.5-9 chr11 72090013 72090226 + 1 NA intron (NR_026886, intron 4 of 6) intron (NR_026886, intron 4 of 6) -9426 NM_006185 4926 Hs.325978 NM_006185 ENSG00000137497 NUMA1 NMP-22|NUMA nuclear mitotic apparatus protein 1 protein-coding 158.5-73 chr3 145752275 145752560 + 1 NA Intergenic PABL_B-int|LTR|ERV1 316768 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 151.25-14 chr12 34674052 34674223 + 1 NA Intergenic ALR/Alpha|Satellite|centr 651641 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 181.5-30 chr18 44310519 44310825 + 1 NA Intergenic L1PA17|LINE|L1 221025 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 119.5-100 chr5 64778997 64779227 + 1 NA intron (NM_001297645, intron 2 of 10) L2b|LINE|L2 10182 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 124.75-11 chr10 14146803 14146939 + 1 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 72587 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 197.5-48 chr5 15027810 15028179 + 1 NA Intergenic MER89|LTR|ERV1 -156216 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 161.75-38 chr4 42916746 42917022 + 1 NA intron (NM_001080476, intron 1 of 3) L1MC4|LINE|L1 23618 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 284.5-11 chr14 53747722 53748117 + 1 NA Intergenic AluSx1|SINE|Alu 200565 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 124.5-94 chr6 146148336 146148530 + 1 NA intron (NM_001278065, intron 2 of 9) L1ME4a|LINE|L1 119235 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 127.5-28 chr12 51669910 51670109 + 1 NA intron (NM_001369788, intron 2 of 25) intron (NM_001369788, intron 2 of 25) 78773 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 149.5 chr1 11002016 11002244 + 1 NA Intergenic AluJb|SINE|Alu -10492 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 159.5-50 chr20 34762765 34762998 + 1 NA intron (NM_001242539, intron 3 of 11) L1ME4b|LINE|L1 19523 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 153.5-46 chr2 121922758 121922961 + 1 NA Intergenic L1MC5|LINE|L1 167208 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 169.25-30 chr2 57737464 57737748 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -170045 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 133.5-33 chr15 52363491 52363722 + 1 NA intron (NM_001142495, intron 24 of 39) intron (NM_001142495, intron 24 of 39) -67802 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 201.5-15 chr14 50110477 50110693 + 1 NA intron (NM_001040662, intron 4 of 4) L1MB2|LINE|L1 -5542 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 206.5-45 chr6 42378399 42378632 + 1 NA intron (NM_001297573, intron 2 of 17) intron (NM_001297573, intron 2 of 17) 73536 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 136.5-66 chr22 39934288 39934599 + 1 NA intron (NM_001291828, intron 1 of 4) L3|LINE|CR1 7839 NM_001291828 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 136.25-31 chr15 60881547 60881795 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 200102 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 169.25 chr1 119167465 119167774 + 1 NA intron (NR_125975, intron 4 of 6) L1M5|LINE|L1 -26947 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 210.5-39 chr3 23846075 23846440 + 1 NA intron (NM_003341, intron 3 of 5) intron (NM_003341, intron 3 of 5) 35803 NM_001202476 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 145.75-21 chr17 30983907 30984199 + 1 NA intron (NM_197939, intron 1 of 3) L1MB2|LINE|L1 8718 NR_002221 503645 Hs.683578 NR_002221 ENSG00000264743 DPRXP4 - divergent-paired related homeobox pseudogene 4 pseudo 153.5-83 chr6 62787033 62787298 + 1 NA Intergenic L1MC1|LINE|L1 -500938 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 284.25-9 chr19 27964227 27964759 + 1 NA intron (NR_146733, intron 3 of 6) intron (NR_146733, intron 3 of 6) -170553 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 161.25-67 chr5 128496458 128496728 + 1 NA intron (NM_001999, intron 5 of 64) L1M4b|LINE|L1 41652 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 421.5 chr14 68240806 68241523 + 1 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 387623 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 120.5-18 chr11 84539582 84539757 + 1 NA intron (NM_001351274, intron 5 of 26) L1PA5|LINE|L1 181273 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 135.5-29 chr14 27133673 27133829 + 1 NA Intergenic Intergenic 225109 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 241.25-13 chr3 101846239 101846698 + 1 NA intron (NM_001005474, intron 2 of 12) intron (NM_001005474, intron 2 of 12) -3046 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 209.5-28 chr3 83114344 83114743 + 1 NA Intergenic Intergenic 1128401 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 157.75-56 chr4 41821430 41821768 + 1 NA Intergenic Intergenic 61012 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 325.25-15 chr8 128081292 128081823 + 1 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 32405 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 174.75-45 chr5 125791260 125791618 + 1 NA Intergenic ERV24_Prim-int|LTR|ERV1 298178 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 237.5-2 chr1 91061021 91061437 + 1 NA Intergenic L2c|LINE|L2 -38974 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 157.75-79 chr8 114300269 114300519 + 1 NA Intergenic L1ME1|LINE|L1 -863455 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 137.25-31 chr14 84056735 84056896 + 1 NA Intergenic L1MC3|LINE|L1 -1215117 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 182.5-14 chr12 51479660 51479902 + 1 NA intron (NM_001039960, intron 16 of 24) intron (NM_001039960, intron 16 of 24) 54664 NM_001258403 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 135.75-101 chr8 53518951 53519120 + 1 NA intron (NR_149032, intron 1 of 1) MER21C|LTR|ERVL 4930 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 131.25-94 chrX 54419658 54419866 + 1 NA Intergenic Intergenic -20613 NM_001346792 90121 Hs.522662 NM_058163 ENSG00000158526 TSR2 DBA14|DT1P1A10|WGG1 TSR2 ribosome maturation factor protein-coding 178.5-78 chr7 91251993 91252289 + 1 NA Intergenic MIRb|SINE|MIR -12292 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 135.25-53 chr20 25554413 25554767 + 1 NA intron (NM_025176, intron 1 of 23) AluJb|SINE|Alu 30941 NM_025176 22981 Hs.631508 NM_025176 ENSG00000101004 NINL NLP ninein like protein-coding 208.5-55 chr4 90111923 90112143 + 1 NA Intergenic Intergenic -15500 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 127.5-68 chr2 191752430 191752585 + 1 NA Intergenic Intergenic -40333 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 177.75-65 chr9 17660359 17660635 + 1 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 81431 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 132.5-103 chr7 9854959 9855122 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 220770 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 171.5-89 chr8 24136328 24136557 + 1 NA Intergenic Intergenic -157598 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 201.5-65 chr8 121238624 121238880 + 1 NA Intergenic MIR|SINE|MIR -400594 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 128.5-96 chr8 79325827 79325984 + 1 NA Intergenic AluSz6|SINE|Alu -6283 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 113.5-30 chr12 115554762 115554927 + 1 NA Intergenic Intergenic 593810 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 172.25-52 chr4 30727988 30728250 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 7750 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 222.5-5 chr10 59826892 59827232 + 1 NA intron (NM_005436, intron 3 of 8) intron (NM_005436, intron 3 of 8) -73607 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 174.75-4 chr1 165371315 165371668 + 1 NA Intergenic L2a|LINE|L2 -14776 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 171.75-13 chr11 111517001 111517188 + 1 NA intron (NM_001100388, intron 3 of 5) intron (NM_001100388, intron 3 of 5) 2309 NM_207430 399949 Hs.411600 NM_207430 ENSG00000183644 C11orf88 - chromosome 11 open reading frame 88 protein-coding 165.5-33 chr16 1836198 1836486 + 1 NA intron (NM_152764, intron 12 of 12) intron (NM_152764, intron 12 of 12) 9118 NM_001142398 81889 Hs.513265 NM_031208 ENSG00000180185 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 180.5-86 chr8 52188780 52189061 + 1 NA intron (NM_014682, intron 8 of 25) L2a|LINE|L2 -5442 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 159.75-14 chr13 21603779 21603946 + 1 NA intron (NM_152726, intron 1 of 11) CpG 308 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 148.5-49 chr2 171854999 171855175 + 1 NA intron (NR_047549, intron 3 of 16) intron (NR_047549, intron 3 of 16) 39157 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 151.75-23 chr13 74797023 74797200 + 1 NA Intergenic AluJr|SINE|Alu 244268 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 269.25-17 chr4 135145862 135146239 + 1 NA Intergenic L2a|LINE|L2 -22491 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 199.25-28 chr3 107299114 107299397 + 1 NA intron (NR_028302, intron 2 of 3) L1ME1|LINE|L1 58563 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 200.5-66 chr8 121815542 121815816 + 1 NA Intergenic Intergenic -174239 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 136.25-61 chr4 70629893 70630126 + 1 NA intron (NM_031889, intron 2 of 8) intron (NM_031889, intron 2 of 8) 1265 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 177.75-4 chr10 78012952 78013149 + 1 NA intron (NM_007055, intron 11 of 30) L2c|LINE|L2 16465 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 228.5-41 chr9 124712508 124712876 + 1 NA intron (NM_033334, intron 2 of 9) L1MD|LINE|L1 18982 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 172.5-94 chrX 108874104 108874369 + 1 NA Intergenic L2|LINE|L2 137696 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 170.75-49 chr3 51405447 51405633 + 1 NA intron (NR_146065, intron 22 of 25) intron (NR_146065, intron 22 of 25) 14255 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 127.75-97 chr8 89039610 89039761 + 1 NA Intergenic Intergenic -712202 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 128.5-3 chr1 163463253 163463417 + 1 NA Intergenic MIR|SINE|MIR -40144 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 117.25-49 chr20 42430241 42430445 + 1 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -255140 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 184.5-56 chr4 52268349 52268638 + 1 NA Intergenic MER4D1|LTR|ERV1 217189 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 163.5-40 chr2 81636530 81636841 + 1 NA Intergenic L1MA2|LINE|L1 -169739 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 197.25-2 chr1 64661356 64661675 + 1 NA intron (NM_020925, intron 13 of 26) intron (NM_020925, intron 13 of 26) 81668 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 126.5-48 chr2 46770645 46770822 + 1 NA Intergenic Intergenic -45935 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 268.5-14 chr2 12325613 12326112 + 1 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 126732 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 195.5-15 chr11 95047432 95047713 + 1 NA Intergenic Intergenic -19305 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 144.25-17 chr12 71254312 71254465 + 1 NA Intergenic L1MB1|LINE|L1 -96389 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 120.5-27 chr12 121223952 121224226 + 1 NA intron (NR_046373, intron 4 of 10) MLT1K|LTR|ERVL-MaLR 13960 NM_002560 5025 Hs.321709 NM_002560 ENSG00000135124 P2RX4 P2X4|P2X4R purinergic receptor P2X 4 protein-coding 218.5-28 chr20 10923568 10923858 + 1 NA Intergenic L1PB4|LINE|L1 -14441 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 165.5-42 chr2 6040377 6040697 + 1 NA Intergenic Intergenic 58559 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 137.75-70 chr5 81644312 81644520 + 1 NA intron (NM_012446, intron 2 of 16) LTR85c|LTR|Gypsy? 106837 NM_001256736 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 146.5-53 chr20 34139537 34139752 + 1 NA Intergenic HAL1|LINE|L1 -27401 NM_001316363 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 209.5-43 chr6 14526262 14526580 + 1 NA Intergenic L1MDa|LINE|L1 -240967 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 179.5-38 chr15 53153600 53153897 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 37383 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 174.75-42 chr5 41146029 41146461 + 1 NA intron (NM_000065, intron 17 of 17) intron (NM_000065, intron 17 of 17) 67287 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 132.75-43 chr15 73421293 73421439 + 1 NA Intergenic AluJr|SINE|Alu -21798 NM_001348772 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 204.25-4 chr1 241805099 241805407 + 1 NA Intergenic L1MC1|LINE|L1 -42938 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 168.75-17 chr18 3524422 3524599 + 1 NA intron (NM_001242762, intron 7 of 9) L1MA9|LINE|L1 58260 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 238.5-35 chr6 169603243 169603514 + 1 NA intron (NM_182552, intron 22 of 25) intron (NM_182552, intron 22 of 25) 98651 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 114.75-83 chr6 13664568 13664788 + 1 NA intron (NM_005493, intron 2 of 13) L1MA4|LINE|L1 47157 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 191.5-25 chr17 5554311 5554656 + 1 NA intron (NM_014922, intron 4 of 15) intron (NM_014922, intron 4 of 15) 30026 NM_014922 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 123.75-27 chr12 16895301 16895510 + 1 NA Intergenic MER103C|DNA|hAT-Charlie -93342 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 194.75-19 chr2 51002012 51002315 + 1 NA intron (NM_004801, intron 2 of 21) MER39|LTR|ERV1 29969 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 244.75-9 chr14 50559254 50559688 + 1 NA promoter-TSS (NM_181598) promoter-TSS (NM_181598) -554 NM_181598 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 161.75-65 chr8 133102124 133102426 + 1 NA intron (NM_003235, intron 43 of 47) intron (NM_003235, intron 43 of 47) 327 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 167.5-73 chr5 144108107 144108329 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 62441 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 148.75-74 chr8 137113949 137114148 + 1 NA Intergenic L1MB7|LINE|L1 299540 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 122.75-24 chr14 58502558 58502698 + 1 NA intron (NM_001329944, intron 27 of 31) MIR|SINE|MIR 62947 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 197.5-16 chr14 58969102 58969473 + 1 NA intron (NR_110547, intron 4 of 5) AluJb|SINE|Alu 140999 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 223.5-12 chr10 88302309 88302644 + 1 NA intron (NM_001031709, intron 6 of 6) MARNA|DNA|TcMar-Mariner 280842 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 117.25-69 chr4 85660095 85660286 + 1 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -62278 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 132.5-38 chr16 65273072 65273388 + 1 NA Intergenic Intergenic -96657 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 277.75-11 chr4 32763868 32764286 + 1 NA Intergenic Intergenic 413039 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 256.5-39 chr8 106282413 106282761 + 1 NA intron (NM_018002, intron 1 of 15) Tigger2a|DNA|TcMar-Tigger 12409 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 120.5-24 chr12 48317462 48317653 + 1 NA Intergenic Intergenic -11423 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 287.5-28 chr7 69014165 69014679 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR 583202 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 149.25-14 chr11 105911728 105911933 + 1 NA intron (NR_046356, intron 9 of 16) intron (NR_046356, intron 9 of 16) 110410 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 278.5-3 chr10 13281907 13282230 + 1 NA intron (NM_001323080, intron 7 of 8) AluJr|SINE|Alu 17678 NM_001323084 5264 Hs.498732 NM_006214 ENSG00000107537 PHYH LN1|LNAP1|PAHX|PHYH1|RD phytanoyl-CoA 2-hydroxylase protein-coding 242.75-8 chr14 85541902 85542208 + 1 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 8706 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 290.25-13 chr4 118711308 118711727 + 1 NA 3' UTR (NM_020961, exon 11 of 11) 3' UTR (NM_020961, exon 11 of 11) 26125 NM_020961 57721 Hs.596872 NM_020961 ENSG00000145388 METTL14 hMETTL14 methyltransferase like 14 protein-coding 171.75-65 chr9 92925474 92925738 + 1 NA Intergenic Intergenic -21917 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 247.25-30 chr9 79524977 79525266 + 1 NA Intergenic Intergenic -46652 NM_001351564 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 138.5-61 chr2 174986132 174986406 + 1 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 18984 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 161.5-80 chr7 24092135 24092438 + 1 NA Intergenic L1MA7|LINE|L1 -191904 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 168.5-40 chr2 65348199 65348629 + 1 NA intron (NM_181784, intron 1 of 5) L2a|LINE|L2 18364 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 180.5-59 chr3 64816159 64816389 + 1 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -128274 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 163.25-12 chr11 38273687 38274039 + 1 NA Intergenic Intergenic 335262 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 198.5-33 chr3 153891688 153892002 + 1 NA Intergenic Intergenic -129319 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 189.5-48 chr4 182615163 182615442 + 1 NA intron (NM_001080477, intron 4 of 27) intron (NM_001080477, intron 4 of 27) 301951 NM_001351743 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 135.75-60 chr20 61792566 61792824 + 1 NA intron (NM_001252339, intron 3 of 14) AluSg|SINE|Alu -72947 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 228.5 chr1 40001433 40001665 + 1 NA Intergenic Arthur1A|DNA|hAT-Tip100 -38516 NM_001350479 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 153.5-52 chr2 227641794 227641987 + 1 NA Intergenic Intergenic -8570 NM_020161 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 125.5-46 chr15 41373857 41374022 + 1 NA intron (NM_001243144, intron 7 of 8) Alu|SINE|Alu 28557 NM_016013 51103 Hs.106529 NM_016013 ENSG00000137806 NDUFAF1 CGI-65|CGI65|CIA30|MC1DN11 NADH:ubiquinone oxidoreductase complex assembly factor 1 protein-coding 140.5-117 chrX 99626491 99626739 + 1 NA Intergenic L1MCa|LINE|L1 783658 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 114.25-44 chr18 7643078 7643220 + 1 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 75833 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 139.5-45 chr2 152494797 152495042 + 1 NA intron (NM_052905, intron 1 of 25) L2b|LINE|L2 159745 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 191.75-43 chr8 51570838 51571136 + 1 NA intron (NM_144651, intron 3 of 22) intron (NM_144651, intron 3 of 22) 238458 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 249.75-6 chr11 76814075 76814396 + 1 NA Intergenic AluY|SINE|Alu 22483 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 182.5-31 chr2 74084072 74084362 + 1 NA intron (NM_001287491, intron 6 of 11) L1MB3|LINE|L1 63695 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 143.25-20 chr12 58652824 58652996 + 1 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 61208 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 306.5-9 chr3 180007712 180008139 + 1 NA intron (NM_016559, intron 1 of 14) THE1A-int|LTR|ERVL-MaLR 29012 NM_001256753 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 314.5-11 chr7 46700777 46701395 + 1 NA Intergenic L1MC2|LINE|L1 -3964 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 263.75-8 chr3 184595637 184595956 + 1 NA Intergenic Intergenic 34011 NM_004443 2049 Hs.2913 NM_004443 ENSG00000182580 EPHB3 EK2|ETK2|HEK2|TYRO6 EPH receptor B3 protein-coding 200.5-29 chr19 30753375 30753751 + 1 NA Intergenic Intergenic 381179 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 143.5-8 chr10 5738846 5739124 + 1 NA intron (NM_017782, intron 12 of 20) intron (NM_017782, intron 12 of 20) 54147 NM_017782 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 220.75-4 chr11 9734479 9734956 + 1 NA intron (NM_015055, intron 7 of 11) AluJo|SINE|Alu -23576 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 130.5-31 chr13 77843937 77844152 + 1 NA intron (NR_103853, intron 6 of 6) L1ME4c|LINE|L1 25107 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 141.5-77 chr3 105492020 105492226 + 1 NA intron (NM_001243280, intron 1 of 14) THE1C|LTR|ERVL-MaLR 125214 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 125.25-8 chr10 64960948 64961142 + 1 NA Intergenic L1M6|LINE|L1 -36527 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 157.5-61 chr22 25755398 25755564 + 1 NA intron (NM_001318245, intron 1 of 43) AluSp|SINE|Alu 13293 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 195.5-71 chr5 24134595 24134915 + 1 NA intron (NR_131245, intron 4 of 4) L1M4b|LINE|L1 183407 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 235.25-27 chr6 117056757 117057041 + 1 NA Intergenic L1MA4A|LINE|L1 179657 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 141.5-70 chr22 28410695 28410994 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -49025 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 124.5-112 chrX 85368143 85368459 + 1 NA intron (NM_001307940, intron 2 of 15) intron (NM_001307940, intron 2 of 15) 11364 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 124.25-65 chr4 100277577 100277821 + 1 NA Intergenic Intergenic -87231 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 196.75-41 chr7 31804650 31804891 + 1 NA intron (NM_001322057, intron 17 of 17) Tigger7|DNA|TcMar-Tigger 117555 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 249.75-2 chr1 172087677 172087964 + 1 NA intron (NM_001278252, intron 12 of 14) L2|LINE|L2 -50988 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 159.25-11 chr11 44964950 44965297 + 1 NA Intergenic Intergenic -8779 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LINC02685 - long intergenic non-protein coding RNA 2685 ncRNA 234.25-19 chr20 49444756 49445185 + 1 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 37698 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 164.75-17 chr11 115192317 115192521 + 1 NA intron (NM_001301045, intron 8 of 10) intron (NM_001301045, intron 8 of 10) -141158 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 135.75-6 chr1 69404374 69404521 + 1 NA Intergenic L2a|LINE|L2 -28808 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 187.5-44 chr2 199797417 199797864 + 1 NA intron (NM_001350855, intron 3 of 3) intron (NM_001350855, intron 3 of 3) 53533 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 143.25-83 chr9 132655794 132656100 + 1 NA intron (NR_136309, intron 6 of 18) intron (NR_136309, intron 6 of 18) 7379 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 123.25-68 chr5 96163601 96163738 + 1 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 84531 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 154.5-6 chr1 203791714 203791923 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR -3719 NM_001350262 9877 Hs.532399 NM_014827 ENSG00000058673 ZC3H11A ZC3HDC11A zinc finger CCCH-type containing 11A protein-coding 276.25-13 chr9 36911936 36912287 + 1 NA intron (NR_103999, intron 6 of 8) intron (NR_103999, intron 6 of 8) -18580 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 190.5-14 chr10 121155375 121155605 + 1 NA Intergenic L3|LINE|CR1 304128 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 149.25-61 chr7 112780986 112781211 + 1 NA intron (NR_109840, intron 1 of 3) L1M4|LINE|L1 9295 NM_001287497 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 129.5-74 chr5 10403673 10403938 + 1 NA intron (NM_001270660, intron 14 of 24) intron (NM_001270660, intron 14 of 24) 1441 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 271.5-23 chr6 25186167 25186530 + 1 NA Intergenic L1M5|LINE|L1 -47956 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 234.5 chr1 229001022 229001418 + 1 NA Intergenic AluSx|SINE|Alu 173581 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 143.25-42 chr20 56268477 56268764 + 1 NA Intergenic Intergenic 19888 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 129.5-96 chrX 139831984 139832140 + 1 NA intron (NM_001353812, intron 1 of 29) intron (NM_001353812, intron 1 of 29) 179 NM_001010986 286410 Hs.88252 NM_173694 ENSG00000101974 ATP11C ATPIG|ATPIQ|HACXL ATPase phospholipid transporting 11C protein-coding 122.75-87 chr9 116037014 116037209 + 1 NA Intergenic MIRc|SINE|MIR -111904 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 115.75-48 chr2 226059357 226059498 + 1 NA Intergenic Intergenic -83367 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 129.75-59 chr4 150984528 150984844 + 1 NA intron (NM_001367550, intron 2 of 56) intron (NM_001367550, intron 2 of 56) 30581 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 151.5-46 chr20 34514390 34514607 + 1 NA Intergenic Intergenic -1886 NM_177953 83658 Hs.593920 NM_014183 ENSG00000125971 DYNLRB1 BITH|BLP|DNCL2A|DNLC2A|ROBLD1 dynein light chain roadblock-type 1 protein-coding 131.5-85 chr7 34700419 34700553 + 1 NA intron (NM_001300934, intron 2 of 6) L1M4|LINE|L1 42247 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 175.5-32 chr16 61800897 61801143 + 1 NA intron (NM_001796, intron 7 of 11) intron (NM_001796, intron 7 of 11) 235418 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 161.5-27 chr12 105546159 105546549 + 1 NA Intergenic Intergenic -157849 NR_110108 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 143.5-47 chr2 39905887 39906136 + 1 NA Intergenic Intergenic -11623 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 191.75-9 chr13 67426579 67426858 + 1 NA Intergenic Intergenic 54331 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 195.75-3 chr10 6569390 6569710 + 1 NA intron (NM_001323265, intron 1 of 17) intron (NM_001323265, intron 1 of 17) 10726 NM_001282644 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 166.5-76 chr4 174389771 174390116 + 1 NA Intergenic Intergenic -33852 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 299.5-3 chr1 244589725 244590274 + 1 NA intron (NM_001130957, intron 14 of 21) intron (NM_001130957, intron 14 of 21) -63049 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 141.5-5 chr1 114034918 114035137 + 1 NA Intergenic Intergenic 55553 NM_001286352 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 159.75-51 chr5 66686432 66686705 + 1 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 90175 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 214.25-32 chr4 32847534 32847892 + 1 NA Intergenic L1M1|LINE|L1 496675 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 129.5-34 chr15 51911847 51912202 + 1 NA 3' UTR (NM_014547, exon 10 of 10) 3' UTR (NM_014547, exon 10 of 10) 12096 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 184.5-54 chr4 47790869 47791216 + 1 NA intron (NM_006587, intron 2 of 21) MLT1D|LTR|ERVL-MaLR -40303 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 120.5-84 chr5 78975388 78975674 + 1 NA intron (NM_198709, intron 2 of 7) intron (NM_198709, intron 2 of 7) 9779 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 122.75-6 chr1 115336500 115336687 + 1 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 1643 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 155.5-38 chr16 57925900 57926114 + 1 NA intron (NM_001297, intron 17 of 32) intron (NM_001297, intron 17 of 32) 45121 NM_001286130 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 127.5-42 chr16 66386231 66386443 + 1 NA intron (NM_001795, intron 2 of 11) L1PA17|LINE|L1 19646 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 176.5-24 chr13 105188125 105188395 + 1 NA Intergenic Intergenic -277607 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 164.75-39 chr21 10727178 10727523 + 1 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 205836 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 124.5-84 chr5 120000480 120000696 + 1 NA Intergenic L1MC4|LINE|L1 371029 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 152.5-75 chr3 159330817 159331092 + 1 NA intron (NM_001197108, intron 1 of 6) L2b|LINE|L2 48308 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 144.25-79 chr8 121777993 121778268 + 1 NA Intergenic Intergenic -136690 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 228.5-23 chr2 209126239 209126556 + 1 NA Intergenic L1MA8|LINE|L1 -297650 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 134.5-12 chr11 22991137 22991352 + 1 NA Intergenic MER67C|LTR|ERV1 -130770 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 178.25-3 chr1 44981993 44982335 + 1 NA intron (NM_001166588, intron 1 of 9) intron (NM_001166588, intron 1 of 9) 4431 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 144.75-24 chr13 95979184 95979382 + 1 NA intron (NM_020121, intron 10 of 38) intron (NM_020121, intron 10 of 38) 74118 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 127.25-56 chr22 19417666 19417900 + 1 NA intron (NM_003325, intron 1 of 24) L1MB2|LINE|L1 13950 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 142.5-46 chr21 29340314 29340544 + 1 NA intron (NR_027655, intron 4 of 7) intron (NR_027655, intron 4 of 7) -32072 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 170.75-44 chr2 171074071 171074336 + 1 NA intron (NM_012290, intron 3 of 20) intron (NM_012290, intron 3 of 20) -7230 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 202.75-30 chr8 100773216 100773579 + 1 NA Intergenic AluY|SINE|Alu -51309 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 167.5-35 chr2 12407888 12408179 + 1 NA intron (NR_110196, intron 4 of 5) MIR1_Amn|SINE|MIR 208903 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 136.25-52 chr3 64912727 64913031 + 1 NA intron (NR_038264, intron 4 of 5) L3|LINE|CR1 -224879 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 194.75-8 chr11 106602237 106602526 + 1 NA Intergenic L1ME3B|LINE|L1 350974 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 246.75-8 chr14 82360048 82360378 + 1 NA Intergenic Intergenic -282419 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 214.75-41 chr9 79806163 79806624 + 1 NA Intergenic MIR|SINE|MIR -18137 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 142.5-92 chr8 87206139 87206359 + 1 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 339834 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 265.75-11 chr5 13600688 13601179 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR 343547 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 118.5-63 chr20 54960939 54961136 + 1 NA Intergenic Intergenic -462006 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 172.5-11 chr12 111353283 111353579 + 1 NA Intergenic Intergenic 15664 NM_144671 144717 Hs.173088 NM_144671 ENSG00000198324 PHETA1 FAM109A|IPIP27A|SES1 PH domain containing endocytic trafficking adaptor 1 protein-coding 126.5-55 chr2 198203608 198203834 + 1 NA Intergenic MLT1J2|LTR|ERVL-MaLR 171376 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 397.5-3 chr2 36167455 36168034 + 1 NA Intergenic L1ME3Cz|LINE|L1 187826 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 188.5-34 chr22 26942034 26942398 + 1 NA Intergenic Intergenic 38924 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 172.25-49 chr3 95003406 95003733 + 1 NA Intergenic L1MEc|LINE|L1 65306 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 235.75-20 chr4 43974246 43974647 + 1 NA Intergenic Intergenic -42415 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 116.5-40 chr15 68029003 68029192 + 1 NA Intergenic MIRb|SINE|MIR -25082 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 192.5-9 chr11 35244714 35245045 + 1 NA Intergenic Intergenic 81929 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 256.5-18 chr17 59435136 59435533 + 1 NA intron (NR_110813, intron 2 of 2) MER5A1|DNA|hAT-Charlie 69251 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 275.75-3 chr10 67696856 67697183 + 1 NA promoter-TSS (NM_013266) promoter-TSS (NM_013266) -824 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 170.5-90 chr9 120999999 121000404 + 1 NA intron (NM_001317164, intron 20 of 20) intron (NM_001317164, intron 20 of 20) -47370 NR_148450 110599590 NR_148450 C5-OT1 C5T1LNCRNA C5 3' UTR overlapping transcript 1 ncRNA 236.5-46 chr8 14675407 14675817 + 1 NA intron (NM_139167, intron 1 of 7) L2b|LINE|L2 177898 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 121.75-52 chr21 28268537 28268790 + 1 NA Intergenic Intergenic -39996 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 152.5-104 chr9 26793784 26794048 + 1 NA Intergenic L1PREC2|LINE|L1 98886 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 210.75-21 chr3 114614545 114614864 + 1 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 9502 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 123.5-10 chr10 67941957 67942136 + 1 NA intron (NM_022079, intron 20 of 25) intron (NM_022079, intron 20 of 25) 50644 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 225.25-36 chr8 141542317 141542623 + 1 NA Intergenic Intergenic -35240 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 130.5-14 chr10 81324243 81324488 + 1 NA Intergenic Intergenic -550829 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 199.5-7 chr10 75224909 75225167 + 1 NA intron (NM_001324090, intron 10 of 11) intron (NM_001324090, intron 10 of 11) 10919 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 175.5-51 chr3 17974245 17974449 + 1 NA intron (NR_161333, intron 1 of 4) MamRep434|DNA|TcMar-Tigger 11795 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 137.25-84 chrX 86956253 86956461 + 1 NA Intergenic L1MA5|LINE|L1 -561445 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 220.5-5 chr1 232836819 232837155 + 1 NA Intergenic L1M5|LINE|L1 32095 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 157.5-42 chr2 18369831 18370040 + 1 NA Intergenic Intergenic 190718 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 200.25-52 chr9 102797114 102797430 + 1 NA Intergenic MIR|SINE|MIR -198061 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 221.75-29 chr8 61783567 61784025 + 1 NA Intergenic Intergenic 69008 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 229.75-31 chr8 119066780 119067198 + 1 NA promoter-TSS (NM_006438) promoter-TSS (NM_006438) -258 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 141.25-41 chr17 47887131 47887452 + 1 NA Intergenic AluJr|SINE|Alu 8525 NR_135480 102724532 Hs.729067 NR_135480 ENSG00000264920 LOC102724532 - uncharacterized LOC102724532 ncRNA 161.25-25 chr14 89875896 89876224 + 1 NA intron (NM_001284269, intron 5 of 5) L2c|LINE|L2 78476 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 117.25-105 chrX 81130263 81130518 + 1 NA intron (NM_030763, intron 1 of 6) MIRb|SINE|MIR 71523 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 170.75-15 chr11 37747811 37748025 + 1 NA Intergenic Intergenic -190683 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 258.5-13 chr4 63851953 63852439 + 1 NA Intergenic L1MB1|LINE|L1 557254 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 144.5-48 chr17 62693469 62693687 + 1 NA TTS (NM_006039) TTS (NM_006039) -12628 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 131.25-68 chr4 77539890 77540082 + 1 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 28233 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 137.5-128 chrX 96680007 96680217 + 1 NA Intergenic Tigger9a|DNA|TcMar-Tigger -4551 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 125.25-17 chr12 12904146 12904436 + 1 NA intron (NM_003979, intron 1 of 3) intron (NM_003979, intron 1 of 3) -11538 NR_030345 693199 NR_030345 ENSG00000283759 MIR614 MIRN614|hsa-mir-614 microRNA 614 ncRNA 120.5-72 chr3 193390661 193390888 + 1 NA Intergenic MER21C|LTR|ERVL -12021 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 116.5-24 chr12 16505720 16505898 + 1 NA Intergenic MER102b|DNA|hAT-Charlie 99570 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 181.25-22 chr17 58395711 58395940 + 1 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 6896 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 201.25-21 chr21 16005549 16005971 + 1 NA Intergenic Intergenic -64728 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 211.5-8 chr12 3605208 3605590 + 1 NA Intergenic Intergenic -112580 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 140.5-116 chrX 82486618 82486988 + 1 NA Intergenic L1MB3|LINE|L1 -1021487 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 238.5-28 chr4 108949746 108950126 + 1 NA intron (NM_001256074, intron 6 of 31) L2b|LINE|L2 -186883 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 150.25-56 chr4 98124570 98124894 + 1 NA intron (NM_174952, intron 3 of 10) L1PA10|LINE|L1 18744 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 188.5-9 chr11 110739559 110740014 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -26597 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 272.25-14 chr4 59513353 59513728 + 1 NA Intergenic Intergenic 499967 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 197.75-22 chr2 144545038 144545342 + 1 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -20746 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 157.75-69 chr6 146108170 146108461 + 1 NA intron (NM_001278065, intron 2 of 9) THE1B|LTR|ERVL-MaLR 79117 NM_001278067 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 183.75-29 chr2 82471079 82471376 + 1 NA Intergenic Intergenic -385576 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 180.5-85 chr7 120080993 120081189 + 1 NA Intergenic Intergenic -173716 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 195.25-48 chr8 88909029 88909300 + 1 NA Intergenic L1MA6|LINE|L1 -581681 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 247.5-30 chr5 68705572 68705875 + 1 NA Intergenic L1ME3C|LINE|L1 324204 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 175.5-41 chr2 68156864 68157089 + 1 NA promoter-TSS (NM_001329917) promoter-TSS (NM_001329917) 551 NM_001256476 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 124.75-72 chr6 4852028 4852197 + 1 NA intron (NM_001143970, intron 1 of 6) L1MC5a|LINE|L1 16014 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 156.5-81 chr8 50140263 50140458 + 1 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -23771 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 195.75-51 chr7 29560647 29560965 + 1 NA Intergenic AluJo|SINE|Alu -3029 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 197.5-64 chr9 109160115 109160362 + 1 NA intron (NM_014334, intron 1 of 4) intron (NM_014334, intron 1 of 4) 7053 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 135.5-72 chr3 59308237 59308482 + 1 NA Intergenic Intergenic -258327 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 135.5-94 chr7 3310581 3310870 + 1 NA intron (NM_152744, intron 1 of 44) L2|LINE|L2 9473 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 238.25-6 chr14 84568752 84569103 + 1 NA Intergenic Intergenic -703005 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 177.25-48 chr7 30932672 30932994 + 1 NA Intergenic Intergenic 20980 NM_001329872 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 214.25-25 chr3 34483634 34483931 + 1 NA Intergenic Intergenic 685152 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 244.5-23 chr3 95196835 95197155 + 1 NA Intergenic L1ME1|LINE|L1 258732 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 144.5-102 chr7 80371250 80371565 + 1 NA TTS (NR_110075) TTS (NR_110075) 3032 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 167.75-26 chr16 79982174 79982435 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 187055 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 211.5-17 chr14 72424860 72425121 + 1 NA intron (NM_001370288, intron 3 of 16) L2a|LINE|L2 -91830 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 168.25-55 chr6 50070561 50070821 + 1 NA Intergenic Intergenic -20762 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 187.5-82 chr8 59691963 59692285 + 1 NA Intergenic Intergenic 572914 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 140.5-110 chr8 92087977 92088216 + 1 NA intron (NM_001198627, intron 2 of 13) intron (NM_001198627, intron 2 of 13) 7134 NM_001198629 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 192.5-24 chr17 59263715 59264022 + 1 NA intron (NM_182569, intron 6 of 9) intron (NM_182569, intron 6 of 9) 43357 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 156.75-5 chr1 184699817 184700134 + 1 NA intron (NM_025191, intron 19 of 19) intron (NM_025191, intron 19 of 19) 54883 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 154.25-72 chrX 47278274 47278521 + 1 NA Intergenic Intergenic 45388 NM_001371072 183.25 chr1 158476009 158476303 + 1 NA Intergenic Intergenic -3722 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 213.5-4 chr1 89892913 89893363 + 1 NA intron (NM_001134479, intron 2 of 2) L2a|LINE|L2 71199 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 124.5-14 chr10 60220484 60220645 + 1 NA intron (NM_001204403, intron 9 of 43) MER4B|LTR|ERV1 -79548 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 254.5-33 chr8 47432284 47432556 + 1 NA intron (NM_001080394, intron 7 of 19) Tigger19a|DNA|TcMar-Tigger 171482 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 119.5-75 chr22 47232590 47232726 + 1 NA Intergenic Intergenic -112913 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 133.5-36 chr15 71041967 71042217 + 1 NA intron (NM_017691, intron 15 of 15) L1M5|LINE|L1 -99357 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 263.75-2 chr12 90392919 90393287 + 1 NA Intergenic L2a|LINE|L2 99785 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 222.75-26 chr2 233098259 233098536 + 1 NA intron (NM_001017915, intron 2 of 26).2 intron (NM_001017915, intron 2 of 26).2 38055 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 163.5-48 chr22 20110423 20110728 + 1 NA 3' UTR (NM_001190326, exon 13 of 13) 3' UTR (NM_001190326, exon 13 of 13) 4176 NR_106874 102465490 NR_106874 ENSG00000278278 MIR6816 hsa-mir-6816 microRNA 6816 ncRNA 193.75-8 chr11 64893190 64893478 + 1 NA intron (NR_133638, intron 1 of 1) intron (NR_133638, intron 1 of 1) 115 NR_133640 105369343 Hs.199371 NR_133638 MIR194-2HG - MIR194-2 host gene ncRNA 137.75-74 chr5 127263009 127263211 + 1 NA Intergenic Intergenic -27654 NM_001308119 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 121.75-78 chr7 5064016 5064207 + 1 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -7949 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 184.25-8 chr10 75028347 75028564 + 1 NA intron (NM_001370144, intron 15 of 15) intron (NM_001370144, intron 15 of 15) 6722 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 178.25-2 chr1 24899734 24900161 + 1 NA 3' UTR (NM_004350, exon 5 of 5) 3' UTR (NM_004350, exon 5 of 5) 19469 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 121.5-90 chr4 81034203 81034367 + 1 NA intron (NM_001201, intron 1 of 2) intron (NM_001201, intron 1 of 2) 3577 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 153.25-8 chr10 61614405 61614690 + 1 NA Intergenic MIRb|SINE|MIR -48382 NM_001366905 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 139.5 chr1 57537977 57538252 + 1 NA intron (NM_001353980, intron 4 of 5) MSTB1|LTR|ERVL-MaLR -113193 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 183.5-49 chr3 78507328 78507608 + 1 NA Intergenic Intergenic -458505 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 230.5-50 chr7 135491430 135491922 + 1 NA intron (NM_013316, intron 1 of 10) L2|LINE|L2 18426 NM_001190849 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 126.5-25 chr12 3486127 3486301 + 1 NA non-coding (NR_126055, exon 2 of 2) non-coding (NR_126055, exon 2 of 2) -4989 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 162.75-58 chr4 157402863 157403062 + 1 NA Intergenic L1MA9|LINE|L1 -169528 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 165.5-16 chr12 12966246 12966475 + 1 NA intron (NR_149067, intron 1 of 2) intron (NR_149067, intron 1 of 2) -13477 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 258.25-3 chr14 59184449 59184871 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -4007 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 236.5-30 chr22 28674289 28674682 + 1 NA intron (NM_001145418, intron 1 of 22) intron (NM_001145418, intron 1 of 22) 5380 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 315.5-10 chr7 33360042 33360591 + 1 NA intron (NM_198428, intron 16 of 22) L1ME4a|LINE|L1 230752 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 173.5-8 chr10 101023453 101023635 + 1 NA exon (NM_001195263, exon 4 of 17) exon (NM_001195263, exon 4 of 17) 7585 NM_001195263 79955 Hs.438245 NM_024895 ENSG00000186862 PDZD7 DFNB57|PDZK7 PDZ domain containing 7 protein-coding 183.5-64 chr5 71788033 71788331 + 1 NA Intergenic Intergenic 68907 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 167.75-7 chr1 245862695 245862970 + 1 NA intron (NM_022743, intron 9 of 11) L3|LINE|CR1 554580 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 186.25-23 chr18 13829801 13830041 + 1 NA Intergenic MER3|DNA|hAT-Charlie 5772 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 149.75-21 chr18 8078182 8078549 + 1 NA intron (NM_002845, intron 9 of 30) intron (NM_002845, intron 9 of 30) 288669 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 126.5-34 chr14 45564112 45564309 + 1 NA Intergenic Intergenic 151392 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 138.5-45 chr17 47782169 47782444 + 1 NA Intergenic L1MD2|LINE|L1 39488 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 228.5-33 chr6 80995313 80995697 + 1 NA Intergenic L1MA1|LINE|L1 757176 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 115.75-30 chr16 7391396 7391524 + 1 NA intron (NM_145893, intron 1 of 13) L2c|LINE|L2 58615 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 205.5-48 chr5 139125544 139125843 + 1 NA intron (NM_022464, intron 2 of 9) MIRb|SINE|MIR 72675 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 178.5-97 chrX 85296153 85296451 + 1 NA intron (NM_001307940, intron 15 of 15) L1P4a|LINE|L1 52311 NM_021998 7552 Hs.326801 NM_021998 ENSG00000147180 ZNF711 CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1 zinc finger protein 711 protein-coding 130.25-53 chr20 7492781 7493004 + 1 NA Intergenic L1PA17|LINE|L1 121284 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 142.75-19 chr10 89600811 89601036 + 1 NA intron (NM_148977, intron 2 of 6) MIRb|SINE|MIR -8096 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 140.75-50 chr5 44928065 44928370 + 1 NA Intergenic Intergenic 119270 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 168.5-26 chr14 70389668 70389937 + 1 NA intron (NM_001202549, intron 1 of 4) L1MB1|LINE|L1 27288 NM_001202548 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 133.25-4 chr1 193706851 193707161 + 1 NA Intergenic Intergenic 402261 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 150.75-81 chr9 86872756 86872950 + 1 NA Intergenic MIRc|SINE|MIR 74653 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 192.5-62 chr9 34408572 34408842 + 1 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) -10897 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 151.75-4 chr1 169018486 169018901 + 1 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 68312 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 117.5-23 chr14 74097898 74098139 + 1 NA intron (NM_001024674, intron 4 of 5) intron (NM_001024674, intron 4 of 5) 13065 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 160.25-8 chr11 38370416 38370754 + 1 NA Intergenic L1ME2|LINE|L1 275771 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 166.25-49 chr5 45270012 45270353 + 1 NA intron (NM_021072, intron 6 of 7) MLT1L|LTR|ERVL-MaLR 426198 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 158.25-33 chr3 88259390 88259554 + 1 NA Intergenic MIR|SINE|MIR -78984 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 129.5 chr1 33392531 33392743 + 1 NA Intergenic Intergenic -17044 NM_198040 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 174.25-19 chr11 98601484 98601752 + 1 NA Intergenic L1M1|LINE|L1 -419331 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 184.5-46 chr2 239596826 239597178 + 1 NA Intergenic Intergenic -165858 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 138.5-38 chr15 95297978 95298273 + 1 NA intron (NR_034095, intron 1 of 3) MIRc|SINE|MIR 28975 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 140.75-42 chr3 114743649 114743797 + 1 NA promoter-TSS (NR_039959) promoter-TSS (NR_039959) -198 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 177.5-5 chr1 225751304 225751698 + 1 NA Intergenic Intergenic -26312 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 147.75-84 chr8 124390718 124390924 + 1 NA Intergenic L1PB3|LINE|L1 -18122 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 182.75-46 chr5 143506786 143507202 + 1 NA Intergenic Intergenic -71482 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 130.5-18 chr11 13905047 13905235 + 1 NA Intergenic Intergenic 19722 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 183.25-44 chr6 71047456 71047709 + 1 NA Intergenic Intergenic -90522 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 269.25-19 chr5 6333979 6334325 + 1 NA intron (NR_028351, intron 1 of 1) intron (NR_028351, intron 1 of 1) 3140 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 163.5-46 chr20 62329432 62329734 + 1 NA intron (NM_005560, intron 32 of 79) intron (NM_005560, intron 32 of 79) 2974 NR_039915 100616340 NR_039915 ENSG00000284074 MIR4758 - microRNA 4758 ncRNA 318.75-10 chr20 49126653 49127254 + 1 NA intron (NM_001319134, intron 5 of 12) L1M5|LINE|L1 61417 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 165.25-60 chrX 80108663 80108918 + 1 NA Intergenic Intergenic 85730 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 117.75-38 chr2 122055544 122055887 + 1 NA Intergenic Intergenic 300064 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 203.25-22 chr16 71202171 71202533 + 1 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 28370 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 174.5-48 chr21 32275228 32275530 + 1 NA intron (NM_018944, intron 1 of 4) intron (NM_018944, intron 1 of 4) 3670 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 275.5-31 chr7 41046650 41047060 + 1 NA Intergenic Intergenic -54749 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 220.25-7 chr10 84390529 84390854 + 1 NA intron (NM_018999, intron 3 of 10) intron (NM_018999, intron 3 of 10) -34248 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 190.25 chr1 28274842 28275212 + 1 NA intron (NM_031459, intron 8 of 9) intron (NM_031459, intron 8 of 9) 15509 NM_031459 83667 Hs.469543 NM_031459 ENSG00000130766 SESN2 HI95|SES2|SEST2 sestrin 2 protein-coding 218.5-31 chr20 58637003 58637304 + 1 NA Intergenic MIRb|SINE|MIR 2381 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 153.5-38 chr18 7652820 7653111 + 1 NA intron (NM_002845, intron 1 of 30) L1MC2|LINE|L1 85649 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 141.75-47 chr2 180681921 180682137 + 1 NA Intergenic L1MA3|LINE|L1 -10075 NR_104323 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 180.5-50 chr20 5232225 5232449 + 1 NA Intergenic L1MB2|LINE|L1 84395 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 113.25-46 chr15 64384687 64384833 + 1 NA intron (NR_109934, intron 1 of 3) AluSx1|SINE|Alu 2927 NR_109934 9768 Hs.81892 NM_014736 ENSG00000166803 PCLAF KIAA0101|L5|NS5ATP9|OEATC|OEATC-1|OEATC1|PAF|PAF15|p15(PAF)|p15/PAF|p15PAF PCNA clamp associated factor protein-coding 216.5-35 chr5 169114579 169114959 + 1 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 101542 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 123.25-30 chr16 8652796 8653045 + 1 NA Intergenic Intergenic -21697 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 218.75-3 chr1 83759742 83759998 + 1 NA intron (NR_119375, intron 1 of 2) intron (NR_119375, intron 1 of 2) 100676 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 169.75-39 chr20 4545519 4545720 + 1 NA Intergenic L1MA10|LINE|L1 -140837 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 199.5-61 chr8 135967322 135967776 + 1 NA Intergenic Intergenic 510093 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 199.5-15 chr14 52086019 52086440 + 1 NA Intergenic Intergenic -17170 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 149.25-64 chr8 124149946 124150116 + 1 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 21491 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 161.25-4 chr1 111463668 111463929 + 1 NA Intergenic AluY|SINE|Alu -10186 NM_001300834 128346 Hs.288010 NM_174896 ENSG00000143110 C1orf162 - chromosome 1 open reading frame 162 protein-coding 175.5-58 chr5 35727539 35727754 + 1 NA intron (NM_024867, intron 20 of 36) intron (NM_024867, intron 20 of 36) 109783 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 132.5-54 chr2 177054085 177054398 + 1 NA Intergenic Intergenic 158170 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 113.25-20 chr11 75657911 75658140 + 1 NA intron (NM_207577, intron 1 of 2) intron (NM_207577, intron 1 of 2) 10409 NM_033063 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 186.75-30 chr20 8084276 8084549 + 1 NA Intergenic L1ME1|LINE|L1 -47854 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 143.75-82 chr7 115859079 115859272 + 1 NA Intergenic Intergenic 109138 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 223.5-32 chr16 73536270 73536509 + 1 NA Intergenic Intergenic 149584 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 226.5-41 chr5 57862000 57862330 + 1 NA Intergenic Intergenic 36997 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 182.75-16 chr18 75040850 75041125 + 1 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 164526 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 144.25-41 chr2 128108521 128108889 + 1 NA intron (NR_027671, intron 4 of 40) L1ME3B|LINE|L1 17505 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 180.25-12 chr12 54059669 54059997 + 1 NA intron (NR_026655, intron 1 of 1) intron (NR_026655, intron 1 of 1) 1579 NR_026655 440101 Hs.350378 NR_026655 ENSG00000248265 FLJ12825 - uncharacterized LOC440101 ncRNA 329.5-9 chr5 17004626 17005101 + 1 NA Intergenic Intergenic -68575 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 184.5-76 chr8 71449976 71450286 + 1 NA intron (NM_001370336, intron 2 of 17) Tigger1|DNA|TcMar-Tigger -88062 NM_001288574 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 221.25-40 chr8 139355392 139355691 + 1 NA Intergenic Intergenic 347582 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 167.75-8 chr10 13220201 13220390 + 1 NA Intergenic Intergenic 3026 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 268.25-4 chr12 63173292 63173845 + 1 NA Intergenic Intergenic -20758 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 264.75-15 chr22 28162132 28162628 + 1 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -241768 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 128.5-65 chr3 167677244 167677499 + 1 NA Intergenic L1MC4|LINE|L1 -19448 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 133.75 chr1 86327032 86327371 + 1 NA Intergenic Intergenic 30486 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 195.5-6 chr1 114310536 114310774 + 1 NA Intergenic HAL1b|LINE|L1 -156786 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 208.5-29 chr17 40709441 40709705 + 1 NA Intergenic Intergenic -5821 NM_019016 192666 Hs.87383 NM_019016 ENSG00000167916 KRT24 K24|KA24 keratin 24 protein-coding 151.5-90 chr9 99976181 99976555 + 1 NA Intergenic Intergenic 69714 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 138.5-64 chr20 11304709 11304935 + 1 NA Intergenic LTR82A|LTR|ERVL -31439 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 234.5-24 chr2 118114529 118114790 + 1 NA Intergenic Intergenic 26109 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 180.5-45 chr2 188761374 188761701 + 1 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 28586 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 190.5-39 chr20 46427596 46427874 + 1 NA intron (NR_146919, intron 2 of 3) L1MA3|LINE|L1 -20684 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 170.5-7 chr1 167605457 167605774 + 1 NA Intergenic Intergenic -24578 NM_001322923 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 180.5-47 chr2 201502959 201503281 + 1 NA intron (NM_001168216, intron 11 of 12) L1MEc|LINE|L1 51380 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 153.5-75 chr5 24249115 24249357 + 1 NA Intergenic THE1D-int|LTR|ERVL-MaLR 297888 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 157.5-53 chr2 108685521 108685717 + 1 NA 3' UTR (NM_001193483, exon 10 of 10) 3' UTR (NM_001193483, exon 10 of 10) -7018 NR_149074 106182118 Hs.613268 NR_149074 ENSG00000228763 LIMS1-AS1 - LIMS1 antisense RNA 1 ncRNA 184.75-10 chr10 53006458 53006689 + 1 NA Intergenic Intergenic -234873 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 184.5-80 chr8 111486475 111486792 + 1 NA Intergenic L1P3|LINE|L1 109994 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 149.75-48 chr5 20183338 20183667 + 1 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -122049 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 218.75-33 chr5 181220984 181221234 + 1 NA Intergenic AluSc|SINE|Alu 1524 NR_039781 100616342 NR_039781 ENSG00000264732 MIR4638 mir-4638 microRNA 4638 ncRNA 180.5-28 chr15 77302665 77302965 + 1 NA intron (NM_024776, intron 1 of 7) L1MC3|LINE|L1 -77411 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 216.5-16 chr2 17744920 17745274 + 1 NA intron (NM_024624, intron 2 of 26) L1MD1|LINE|L1 8713 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 198.25-11 chr14 54222936 54223171 + 1 NA Intergenic L1MB3|LINE|L1 -173815 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 297.25-19 chr9 31484396 31484787 + 1 NA Intergenic Intergenic -103101 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 132.75-68 chr3 191556298 191556471 + 1 NA intron (NR_120606, intron 2 of 6) ERVL-E-int|LTR|ERVL 95221 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 222.5-34 chr3 189325732 189326007 + 1 NA TTS (NM_198485) TTS (NM_198485) -85275 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 128.25-4 chr1 112067396 112067581 + 1 NA Intergenic LTR16B2|LTR|ERVL 76952 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 256.75-2 chr12 98957926 98958291 + 1 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -62817 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 163.75-26 chr18 13955757 13956085 + 1 NA Intergenic L1PA14|LINE|L1 -40214 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 145.5-33 chr16 74743391 74743671 + 1 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 31289 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 213.5-31 chr21 30864432 30864757 + 1 NA Intergenic Intergenic 16986 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 208.5-28 chr16 75096965 75097284 + 1 NA intron (NM_032268, intron 2 of 4) intron (NM_032268, intron 2 of 4) 19648 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 233.75-5 chr10 107587960 107588345 + 1 NA Intergenic MER4D|LTR|ERV1 -423446 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 114.75-51 chr2 143490384 143490550 + 1 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 361048 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 127.25-93 chr8 126774372 126774562 + 1 NA Intergenic Intergenic -215989 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 180.75-31 chr16 82550444 82550692 + 1 NA Intergenic L1MC5a|LINE|L1 -76401 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 118.75-33 chr14 82708892 82709086 + 1 NA Intergenic Intergenic 66357 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 173.5-47 chr2 109396233 109396491 + 1 NA intron (NM_001099289, intron 3 of 9) MER131|DNA?|DNA? -82737 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 146.5-76 chr5 104389379 104389598 + 1 NA Intergenic Intergenic -709986 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 169.75-19 chr13 41721989 41722308 + 1 NA intron (NM_001009814, intron 24 of 25) intron (NM_001009814, intron 24 of 25) -153753 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 144.5-19 chr11 26013537 26013815 + 1 NA Intergenic L1MA10|LINE|L1 -175447 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 177.5-22 chr17 5335026 5335414 + 1 NA exon (NM_004703, exon 4 of 18) exon (NM_004703, exon 4 of 18) 52936 NM_001291582 9135 Hs.584784 NM_004703 ENSG00000029725 RABEP1 RAB5EP|RABPT5 rabaptin, RAB GTPase binding effector protein 1 protein-coding 154.75-6 chr10 119436651 119437026 + 1 NA exon (NM_005308, exon 9 of 16) exon (NM_005308, exon 9 of 16) 58866 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 201.5-50 chr6 39368947 39369259 + 1 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) -46135 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 152.75-47 chr4 33292763 33293057 + 1 NA Intergenic L1MC4|LINE|L1 746983 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 223.5-49 chr22 48393487 48393935 + 1 NA Intergenic AluSx|SINE|Alu -95842 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 141.5-9 chr1 226195532 226195805 + 1 NA Intergenic Intergenic -8927 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 264.5 chr1 26622029 26622570 + 1 NA Intergenic AluY|SINE|Alu 67757 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 210.5-2 chr1 101590321 101590644 + 1 NA Intergenic Intergenic 256598 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 340.5 chr10 55831709 55832469 + 1 NA Intergenic Intergenic -204147 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 288.75-14 chr3 195573299 195573667 + 1 NA intron (NM_001647, intron 3 of 4) L3|LINE|CR1 10457 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 135.25-39 chr2 18221984 18222247 + 1 NA Intergenic Intergenic 338538 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 202.25-42 chrX 70418550 70418963 + 1 NA intron (NM_012310, intron 29 of 30) intron (NM_012310, intron 29 of 30) -4275 NM_017711 54857 Hs.438712 NM_017711 ENSG00000130055 GDPD2 GDE3|OBDPF glycerophosphodiester phosphodiesterase domain containing 2 protein-coding 121.25-70 chr7 4381764 4381997 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -247043 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 155.25-67 chr7 36395922 36396118 + 1 NA intron (NM_001284302, intron 1 of 22) MLT1H|LTR|ERVL-MaLR -5663 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 141.25-67 chr7 31875641 31875963 + 1 NA intron (NM_001191059, intron 6 of 18) (TA)n|Simple_repeat|Simple_repeat 188587 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 122.5-5 chr1 191598490 191598726 + 1 NA Intergenic Intergenic -370110 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 224.25-33 chrX 56501855 56502119 + 1 NA Intergenic L1MA3|LINE|L1 -61606 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 236.75-10 chr18 1935459 1935901 + 1 NA Intergenic Intergenic -576051 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 167.75-17 chr13 69434207 69434463 + 1 NA Intergenic Intergenic 211989 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 144.5-109 chr8 128537094 128537345 + 1 NA intron (NR_121672, intron 2 of 7) MIRb|SINE|MIR 27460 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 286.75-6 chr3 71280165 71280627 + 1 NA intron (NR_146142, intron 5 of 19) AluSx1|SINE|Alu -9362 NR_126463 104502416 Hs.658538 NR_126463 ENSG00000244203 FOXP1-AS1 - FOXP1 antisense RNA 1 ncRNA 193.25-23 chr3 3038302 3038653 + 1 NA intron (NM_175607, intron 18 of 24) intron (NM_175607, intron 18 of 24) 22668 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 282.25-16 chr8 136329430 136329904 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -201131 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 224.75-7 chr12 13204951 13205351 + 1 NA intron (NM_001423, intron 1 of 4) L3|LINE|CR1 8425 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 113.25-75 chr2 174151712 174151925 + 1 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 96714 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 183.25-51 chr8 8661817 8662211 + 1 NA Intergenic MLT1E1|LTR|ERVL-MaLR -39923 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 165.5-89 chr8 11468906 11469113 + 1 NA Intergenic Intergenic -2256 NM_053279 83648 Hs.124299 NM_053279 ENSG00000154319 FAM167A C8orf13|D8S265|DIORA-1 family with sequence similarity 167 member A protein-coding 177.5-69 chrX 30917866 30918111 + 1 NA Intergenic L1ME3Cz|LINE|L1 -28734 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 148.25-12 chr11 36861992 36862163 + 1 NA Intergenic Intergenic -263798 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 203.25-35 chr4 30879667 30880040 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 159484 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 252.5-11 chr16 12841696 12842133 + 1 NA Intergenic AluSx|SINE|Alu -38027 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 119.75-30 chr15 90532199 90532357 + 1 NA intron (NM_001042574, intron 1 of 14) Charlie29a|DNA|hAT-Charlie 2355 NM_001042574 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 176.25-18 chr14 20524847 20525193 + 1 NA Intergenic Intergenic 14548 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 187.5-74 chr7 19800910 19801257 + 1 NA Intergenic L1MC3|LINE|L1 -27466 NM_001366628 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 122.75-68 chr5 129457876 129458123 + 1 NA Intergenic Intergenic -2299 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 161.75-18 chr15 54266265 54266649 + 1 NA intron (NM_001329919, intron 9 of 31) intron (NM_001329919, intron 9 of 31) 253809 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 122.5-86 chr6 126029738 126029947 + 1 NA intron (NM_001031712, intron 12 of 12) intron (NM_001031712, intron 12 of 12) 43302 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 124.25-42 chr18 493532 493698 + 1 NA intron (NM_130386, intron 1 of 9) L2b|LINE|L2 7086 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 196.75-43 chr8 25568565 25568984 + 1 NA Intergenic Intergenic 109541 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 222.5-36 chr4 29866991 29867369 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 652888 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 208.25-14 chr2 154247008 154247383 + 1 NA intron (NM_052917, intron 7 of 12) intron (NM_052917, intron 7 of 12) 210243 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 178.5-21 chr16 20045343 20045656 + 1 NA intron (NM_001002911, intron 1 of 1) intron (NM_001002911, intron 1 of 1) 28279 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 118.5-40 chr15 73171153 73171319 + 1 NA intron (NM_002499, intron 5 of 28) L1MC5|LINE|L1 118752 NM_001172624 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 126.75-41 chr2 72990521 72990759 + 1 NA intron (NR_138476, intron 9 of 14) MIRb|SINE|MIR 68532 NM_001330411 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 282.25-5 chr14 99818634 99819179 + 1 NA intron (NM_004434, intron 1 of 21) intron (NM_004434, intron 1 of 21) 25493 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 140.5-71 chr4 43960477 43960643 + 1 NA Intergenic MER49|LTR|ERV1 -56301 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 130.5-72 chr5 104137725 104137872 + 1 NA Intergenic Intergenic -575009 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 137.25-24 chr12 44973782 44973965 + 1 NA Intergenic Intergenic -59945 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 167.5-40 chr2 101264329 101264588 + 1 NA intron (NM_017546, intron 3 of 6) intron (NM_017546, intron 3 of 6) 8591 NR_003070 692205 Hs.656503 NR_003070 ENSG00000212283 SNORD89 HBII-289 small nucleolar RNA, C/D box 89 snoRNA 124.5-85 chr5 132580015 132580239 + 1 NA intron (NM_005732, intron 5 of 24) L1MA8|LINE|L1 23150 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 227.75-3 chr11 60612370 60612757 + 1 NA Intergenic Intergenic -3188 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 270.5-26 chr6 91953597 91954005 + 1 NA Intergenic Intergenic -263373 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 194.25-19 chr17 70987693 70988101 + 1 NA Intergenic Intergenic 214282 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 252.5-4 chr10 113440463 113440889 + 1 NA Intergenic Intergenic -110155 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 178.75-54 chr7 41273912 41274131 + 1 NA Intergenic MamRep4096|DNA|hAT-Tip100 172417 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 149.75-62 chr7 87446673 87446869 + 1 NA intron (NM_018849, intron 9 of 27) intron (NM_018849, intron 9 of 27) 28909 NM_018849 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 149.5-53 chr2 71918144 71918396 + 1 NA Intergenic L1ME1|LINE|L1 229592 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 120.25-45 chr3 88300630 88300937 + 1 NA Intergenic Intergenic -37673 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 196.75-21 chr20 57208272 57208479 + 1 NA intron (NM_001719, intron 2 of 6) L1MB7|LINE|L1 -5321 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 179.5-77 chr5 59111323 59111560 + 1 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -71965 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 241.5-15 chr2 71551882 71552204 + 1 NA intron (NM_001130985, intron 19 of 54) MIR|SINE|MIR 85344 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 155.5-76 chr4 105370736 105371019 + 1 NA intron (NM_176869, intron 10 of 11) intron (NM_176869, intron 10 of 11) -17996 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 147.75-78 chr7 55149554 55149729 + 1 NA intron (NM_201284, intron 4 of 15) L1ME4a|LINE|L1 39308 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 140.5-85 chr5 121304864 121305045 + 1 NA Intergenic Intergenic -17596 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 164.5-34 chr18 71034644 71034847 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -383791 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 158.5-87 chr6 45133901 45134143 + 1 NA intron (NM_001350325, intron 2 of 10) MSTD|LTR|ERVL-MaLR 63748 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 124.25-49 chr2 88634531 88634708 + 1 NA Intergenic L1ME1|LINE|L1 6790 NR_135540 101928403 Hs.434326 NR_135540 ENSG00000234028 EIF2AK3-DT - EIF2AK3 divergent transcript ncRNA 142.5-106 chrX 54050396 54050779 + 1 NA Intergenic AluJo|SINE|Alu -5451 NM_001184896 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 171.25-44 chr5 89937063 89937517 + 1 NA Intergenic Intergenic 79430 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 170.75-18 chr12 52382791 52383040 + 1 NA intron (NM_033045, intron 3 of 8) intron (NM_033045, intron 3 of 8) 2737 NM_033045 3890 Hs.272336 NM_033045 ENSG00000161849 KRT84 HB4|KRTHB4 keratin 84 protein-coding 135.5-41 chr16 28108082 28108348 + 1 NA intron (NM_001270940, intron 18 of 24) intron (NM_001270940, intron 18 of 24) -44501 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 151.5-70 chr5 147541502 147541661 + 1 NA Intergenic Intergenic -18413 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 180.25-22 chr16 79646004 79646217 + 1 NA Intergenic L2c|LINE|L2 -45373 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 129.5-61 chr3 58496675 58497039 + 1 NA intron (NM_001128214, intron 1 of 2) intron (NM_001128214, intron 1 of 2) -1508 NM_153331 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 254.75-13 chr18 69914961 69915405 + 1 NA intron (NM_001303619, intron 1 of 4) MER20B|DNA|hAT-Charlie 32690 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 226.75-32 chr9 107113264 107113702 + 1 NA Intergenic MIRb|SINE|MIR -10495 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 131.25-83 chr7 53784171 53784357 + 1 NA intron (NR_038371, intron 1 of 5) L1ME3F|LINE|L1 27667 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 134.5-88 chr7 2826473 2826649 + 1 NA intron (NM_001293092, intron 1 of 2) L1MC2|LINE|L1 -11331 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 226.25-23 chr20 52311912 52312442 + 1 NA Intergenic Intergenic -120192 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 156.75-12 chr10 103553675 103553871 + 1 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -36331 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 179.25-33 chr4 165642001 165642320 + 1 NA Intergenic Intergenic -42479 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 157.5-33 chr16 70534371 70534613 + 1 NA intron (NM_012426, intron 5 of 25) intron (NM_012426, intron 5 of 25) -3513 NR_003079 692214 NR_003079 ENSG00000221066 SNORD111 HBII-82 small nucleolar RNA, C/D box 111 snoRNA 130.25-77 chr5 93587386 93587614 + 1 NA intron (NM_005654, intron 1 of 2) intron (NM_005654, intron 1 of 2) 4278 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 177.5-53 chr5 34944146 34944422 + 1 NA intron (NM_194283, intron 7 of 12) intron (NM_194283, intron 7 of 12) 14691 NM_001348420 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 162.5-38 chr19 29470396 29470642 + 1 NA intron (NR_040029, intron 1 of 9) L1ME1|LINE|L1 55233 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 120.5-88 chr6 37522879 37523097 + 1 NA intron (NR_126057, intron 1 of 3) intron (NR_126057, intron 1 of 3) 15640 NR_126057 100505530 Hs.582978 NM_001039791 LINC02520 - long intergenic non-protein coding RNA 2520 ncRNA 147.75-81 chr8 78118142 78118310 + 1 NA Intergenic Intergenic -398114 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 125.5-80 chr3 73043676 73043902 + 1 NA intron (NM_001318025, intron 2 of 7) L1MB3|LINE|L1 -17870 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 154.5-33 chr16 68494315 68494539 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -44786 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 216.25-4 chr1 210275201 210275758 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -41594 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 131.75-44 chr2 98064257 98064491 + 1 NA Intergenic L1PA3|LINE|L1 -22793 NR_144296 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 174.25-4 chr1 46670273 46670578 + 1 NA Intergenic L2a|LINE|L2 -1429 NM_001300863 374973 Hs.443299 NM_001145474 ENSG00000186118 TEX38 ATPAF1-AS1|C1orf223|THEG4 testis expressed 38 protein-coding 132.5-37 chr16 21083363 21083559 + 1 NA intron (NM_001347886, intron 19 of 61) intron (NM_001347886, intron 19 of 61) 67385 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 164.5-32 chr18 39533554 39533833 + 1 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 88482 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 152.5-91 chr6 72716674 72717062 + 1 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 86373 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 177.25-52 chr8 68960972 68961179 + 1 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 143115 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 146.5-38 chr17 63444670 63444983 + 1 NA intron (NM_001915, intron 1 of 5) intron (NM_001915, intron 1 of 5) 1358 NM_001017916 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 169.25-44 chr4 102639226 102639452 + 1 NA intron (NM_005908, intron 14 of 16) intron (NM_005908, intron 14 of 16) 121629 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 183.5-59 chr5 4507797 4508103 + 1 NA Intergenic L1MD|LINE|L1 -265531 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 303.5 chr1 56985582 56985996 + 1 NA Intergenic Intergenic -19649 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 274.25-4 chr15 25939759 25940155 + 1 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 37597 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 211.25-21 chr20 19315567 19315927 + 1 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -31151 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 162.75-32 chr18 9586520 9586794 + 1 NA intron (NR_052003, intron 5 of 19) intron (NR_052003, intron 5 of 19) 27902 NR_052003 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 141.75-11 chr11 35351261 35351504 + 1 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 68176 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 123.5-21 chr11 70306513 70306763 + 1 NA intron (NR_045286, intron 2 of 28) intron (NR_045286, intron 2 of 28) 22683 NR_031624 100313770 NR_031624 ENSG00000221333 MIR548K MIRN548K microRNA 548k ncRNA 207.25-5 chr10 44998905 44999201 + 1 NA 3' UTR (NM_001039380, exon 2 of 2) 3' UTR (NM_001039380, exon 2 of 2) 1857 NR_126421 220979 Hs.707791 NM_001039380 C10orf25 - chromosome 10 open reading frame 25 protein-coding 214.5-17 chr16 69555499 69555906 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 10166 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 118.5-20 chr10 78811745 78811900 + 1 NA Intergenic MLT2B1|LTR|ERVL 255626 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 141.75-4 chr1 216751065 216751306 + 1 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -27713 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 219.75-2 chr10 19383405 19383669 + 1 NA intron (NM_001142308, intron 26 of 39) L1PA15|LINE|L1 334736 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 157.5-41 chr2 4946492 4946791 + 1 NA Intergenic Intergenic -290419 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 180.25-65 chr8 85839262 85839560 + 1 NA Intergenic Intergenic -11469 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 207.75-14 chr16 11752671 11752992 + 1 NA exon (NM_014153, exon 22 of 23) exon (NM_014153, exon 22 of 23) -9974 NM_001324022 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 131.5-44 chr2 162600797 162601070 + 1 NA intron (NM_033272, intron 2 of 15) MER117|DNA|hAT-Charlie -168003 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 206.25-5 chr10 105317519 105317780 + 1 NA Intergenic Intergenic 502684 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 167.75-23 chr14 64262038 64262297 + 1 NA intron (NR_073496, intron 4 of 7) AluJb|SINE|Alu 20908 NM_001271877 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 131.5-10 chr10 56994489 56994700 + 1 NA Intergenic Intergenic 309965 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 189.75-32 chr3 106800924 106801411 + 1 NA Intergenic L1ME2|LINE|L1 439471 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 159.25-7 chr10 76854101 76854453 + 1 NA Intergenic L1MA2|LINE|L1 -33767 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 213.75-38 chr5 164782263 164782555 + 1 NA Intergenic L1M4|LINE|L1 312130 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 176.25-11 chr11 115986761 115987073 + 1 NA Intergenic Intergenic -226717 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 213.5-33 chr3 24610289 24610588 + 1 NA Intergenic L1ME3B|LINE|L1 -114730 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 154.25-39 chr2 108249700 108249865 + 1 NA intron (NM_001008743, intron 2 of 7) L1ME1|LINE|L1 9814 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 200.5-64 chr8 98726892 98727265 + 1 NA intron (NM_006281, intron 4 of 10) MLT1K|LTR|ERVL-MaLR 98593 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 159.25-48 chr3 33742721 33742978 + 1 NA Intergenic Intergenic -24595 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 248.75-2 chr11 33296512 33296882 + 1 NA intron (NM_001278162, intron 2 of 15) Tigger1|DNA|TcMar-Tigger 38366 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 213.25-7 chr10 129317645 129317973 + 1 NA Intergenic L1ME1|LINE|L1 -149432 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 201.75-14 chr17 58629397 58629726 + 1 NA intron (NM_031272, intron 3 of 31) AluY|SINE|Alu 62494 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 146.5 chr1 32990006 32990372 + 1 NA Intergenic AluSx|SINE|Alu -25380 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 123.75-7 chr1 101662624 101662866 + 1 NA Intergenic Intergenic 184335 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 237.5-13 chr14 87074269 87074696 + 1 NA Intergenic Intergenic 168704 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 223.5-57 chr4 74300620 74300950 + 1 NA intron (NM_001144978, intron 7 of 7) MER47B|DNA|TcMar-Tigger -7685 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 191.5-61 chr7 388943 389295 + 1 NA Intergenic Intergenic 9694 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 172.5-12 chr12 112815815 112816054 + 1 NA intron (NM_001347955, intron 2 of 20) intron (NM_001347955, intron 2 of 20) 24186 NM_014954 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 126.5-126 chrX 143535573 143535719 + 1 NA Intergenic L1PB3|LINE|L1 -18171 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 254.25-8 chr15 85351224 85351577 + 1 NA Intergenic Intergenic -29196 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 124.5-39 chr17 13422594 13422725 + 1 NA Intergenic CR1_Mam|LINE|CR1 -115899 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 156.5-61 chr5 80619146 80619456 + 1 NA intron (NR_125754, intron 1 of 1) intron (NR_125754, intron 1 of 1) 3223 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 156.5-8 chr10 111102464 111102673 + 1 NA Intergenic Intergenic -11723 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 190.5-29 chr16 31439034 31439357 + 1 NA intron (NM_001353381, intron 1 of 1) L1ME1|LINE|L1 3594 NM_001136509 283933 Hs.722243 NM_001136509 ENSG00000176723 ZNF843 - zinc finger protein 843 protein-coding 168.75-18 chr19 30652248 30652440 + 1 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 279960 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 160.5-40 chr2 232597394 232597645 + 1 NA Intergenic L1MD3|LINE|L1 -8538 NM_001243252 80303 Hs.516769 NM_025202 ENSG00000115468 EFHD1 MST133|MSTP133|PP3051|SWS2 EF-hand domain family member D1 protein-coding 239.25-5 chr10 60351682 60351963 + 1 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 38053 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 175.5-47 chr2 193115006 193115294 + 1 NA Intergenic L1MD2|LINE|L1 365305 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 169.5-8 chr10 14871093 14871485 + 1 NA intron (NM_016299, intron 13 of 13) intron (NM_016299, intron 13 of 13) -7494 NR_034181 79723 Hs.554883 NM_024670 ENSG00000152455 SUV39H2 KMT1B suppressor of variegation 3-9 homolog 2 protein-coding 226.5-37 chr4 35693657 35694047 + 1 NA Intergenic AluSz|SINE|Alu 550087 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 126.75-51 chr20 5179697 5179912 + 1 NA intron (NM_003818, intron 5 of 12) MIRc|SINE|MIR 52796 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 144.25-66 chr5 159393070 159393340 + 1 NA Intergenic Intergenic 61687 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 159.25-24 chr17 33792657 33792862 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -258999 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 164.5-93 chr7 88530441 88530640 + 1 NA Intergenic L2|LINE|L2 -223646 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 115.5-54 chr21 23194996 23195181 + 1 NA Intergenic L1M5|LINE|L1 115804 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 216.5-17 chr2 76320345 76320712 + 1 NA Intergenic Intergenic -609613 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 122.75-35 chr18 10036023 10036260 + 1 NA Intergenic Intergenic 122125 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 121.5-65 chr2 105293182 105293340 + 1 NA intron (NM_001142621, intron 4 of 11) intron (NM_001142621, intron 4 of 11) 36395 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 140.5-86 chr5 142259209 142259455 + 1 NA Intergenic L1MA4|LINE|L1 58990 NR_131221 100642175 Hs.684549 NR_131221 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 179.5-95 chr8 118993962 118994286 + 1 NA intron (NM_001324095, intron 1 of 7) MLT1K|LTR|ERVL-MaLR 41861 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 158.25-49 chr5 43445079 43445325 + 1 NA 3' UTR (NM_022483, exon 3 of 3) 3' UTR (NM_022483, exon 3 of 3) -32811 NM_001301874 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 133.5-80 chr4 92088569 92088855 + 1 NA Intergenic Intergenic 188590 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 136.75-102 chr8 62623525 62623891 + 1 NA intron (NM_001304533, intron 3 of 6) L1MCa|LINE|L1 -354153 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 233.25-19 chr2 103133220 103133611 + 1 NA Intergenic Intergenic -148986 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 130.25-37 chr17 58523485 58523661 + 1 NA intron (NM_004574, intron 5 of 11) intron (NM_004574, intron 5 of 11) 3736 NR_110810 101927688 Hs.660034 NR_110810 ENSG00000264672 SEPTIN4-AS1 SEPT4-AS1 SEPT4 antisense RNA 1 ncRNA 173.75-3 chr1 118539580 118539840 + 1 NA Intergenic Intergenic -354482 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 114.25-62 chr2 134271595 134271727 + 1 NA intron (NM_001371457, intron 3 of 16) intron (NM_001371457, intron 3 of 16) 17589 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 184.75-21 chr14 38519523 38519919 + 1 NA Intergenic Intergenic -263628 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 165.75-62 chr6 82685938 82686276 + 1 NA Intergenic LTR8A|LTR|ERV1 321863 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 127.25-22 chr12 109043385 109043522 + 1 NA intron (NM_001301175, intron 3 of 15) L1MB3|LINE|L1 -9123 NM_032663 84749 Hs.486434 NM_032663 ENSG00000135093 USP30 - ubiquitin specific peptidase 30 protein-coding 229.25-3 chr10 92883064 92883512 + 1 NA intron (NM_001319195, intron 1 of 21) intron (NM_001319195, intron 1 of 21) 34768 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 166.25-6 chr10 47202383 47202735 + 1 NA Intergenic Intergenic -97638 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 112.75-51 chr2 139508628 139508761 + 1 NA Intergenic L1MC1|LINE|L1 611370 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 277.75-6 chr11 80859943 80860390 + 1 NA Intergenic AluSq2|SINE|Alu -97363 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 189.25-29 chr3 102746590 102746950 + 1 NA Intergenic Intergenic 311755 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 162.25-12 chr14 78321454 78321668 + 1 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -82158 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 151.5-60 chr5 23700217 23700570 + 1 NA Intergenic Intergenic 192738 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 222.5-39 chr5 10510841 10511188 + 1 NA intron (NR_134289, intron 1 of 2) intron (NR_134289, intron 1 of 2) -1820 NR_134290 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 113.25-108 chr7 90960071 90960227 + 1 NA intron (NM_012395, intron 8 of 13) intron (NM_012395, intron 8 of 13) 250333 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 167.75-52 chr4 114368221 114368556 + 1 NA Intergenic AluSz|SINE|Alu -230014 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 248.25-29 chr6 13739963 13740371 + 1 NA Intergenic AluSq2|SINE|Alu -28332 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 161.25-37 chr2 18453894 18454248 + 1 NA Intergenic Intergenic 106582 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 277.5-24 chrX 98177414 98177771 + 1 NA Intergenic Intergenic -613057 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 161.5-54 chr3 58795493 58795684 + 1 NA intron (NM_001351532, intron 14 of 14) AluJb|SINE|Alu -28883 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 438.5 chr13 86201851 86202652 + 1 NA Intergenic Intergenic -402832 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 114.5-45 chr2 13816858 13816998 + 1 NA Intergenic Intergenic 584030 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 244.25-23 chr6 160205012 160205385 + 1 NA Intergenic L1ME3G|LINE|L1 53623 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 141.75-69 chr5 117707806 117708181 + 1 NA Intergenic L2c|LINE|L2 -22368 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 137.75-66 chr5 7089989 7090145 + 1 NA Intergenic L2b|LINE|L2 179287 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 210.75-29 chr4 139762118 139762528 + 1 NA intron (NM_018717, intron 2 of 4) MIR|SINE|MIR 96504 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 126.5-44 chr17 78838924 78839091 + 1 NA intron (NM_001321291, intron 1 of 20) intron (NM_001321291, intron 1 of 20) 1520 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 314.5-8 chr3 122339440 122340066 + 1 NA intron (NM_005213, intron 2 of 2) AluJr4|SINE|Alu 14505 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 231.5-49 chr8 90600935 90601363 + 1 NA intron (NR_104062, intron 1 of 2) intron (NR_104062, intron 1 of 2) 4914 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 278.25-22 chr6 103264215 103264638 + 1 NA Intergenic LTR28B|LTR|ERV1 1595120 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 141.5-95 chr5 129489052 129489379 + 1 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -28526 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 188.25-5 chr10 34214163 34214490 + 1 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -441646 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 230.25-10 chr18 1598297 1598565 + 1 NA Intergenic Intergenic -238802 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 129.25-7 chr10 51385293 51385615 + 1 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 85881 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 171.25-63 chr9 134758677 134758943 + 1 NA intron (NM_001278074, intron 18 of 65) intron (NM_001278074, intron 18 of 65) 90559 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 167.25-36 chr2 63889481 63889670 + 1 NA intron (NM_001001521, intron 8 of 9) L2a|LINE|L2 47695 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 134.25-8 chr10 61560558 61560876 + 1 NA Intergenic L1MEh|LINE|L1 80676 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 120.25-76 chr8 126184879 126185017 + 1 NA Intergenic Intergenic -140547 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 209.5-30 chr3 150106229 150106586 + 1 NA intron (NR_136187, intron 1 of 2) intron (NR_136187, intron 1 of 2) 9964 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 145.5-18 chr11 88289409 88289650 + 1 NA Intergenic Intergenic 48207 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 192.5-34 chr20 58186486 58186773 + 1 NA Intergenic HAL1|LINE|L1 35727 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 294.75-14 chr4 103681712 103682161 + 1 NA intron (NM_001059, intron 1 of 4) L1MD|LINE|L1 38049 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 219.5 chr1 13470476 13470879 + 1 NA Intergenic MER115|DNA|hAT-Tip100 43326 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 125.25-54 chr3 108359545 108359863 + 1 NA intron (NM_001370244, intron 6 of 9) intron (NM_001370244, intron 6 of 9) 47919 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 122.5-19 chr12 13173973 13174279 + 1 NA Intergenic Intergenic -22600 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 232.5-36 chr5 12114019 12114353 + 1 NA Intergenic Intergenic -209740 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 159.5-79 chr8 121156032 121156302 + 1 NA Intergenic L1ME2|LINE|L1 -344121 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 242.25-18 chr22 27650580 27651014 + 1 NA Intergenic Intergenic 150959 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 135.25-36 chr18 8727229 8727568 + 1 NA intron (NM_015210, intron 4 of 16) L1PB4|LINE|L1 10017 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 165.5-79 chr6 164647959 164648285 + 1 NA Intergenic L1M2|LINE|L1 173941 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 157.75-32 chr17 9123343 9123778 + 1 NA intron (NM_004822, intron 2 of 6) L1MB7|LINE|L1 55558 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 139.5-12 chr11 24786007 24786206 + 1 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 289053 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 249.25 chr1 38068390 38068814 + 1 NA Intergenic Intergenic -20629 NR_037432 100500801 NR_037432 ENSG00000265596 MIR3659 mir-3659 microRNA 3659 ncRNA 145.75-35 chr2 46263254 46263419 + 1 NA Intergenic Intergenic -34071 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 181.75-42 chr8 24433829 24434211 + 1 NA intron (NR_125808, intron 1 of 5) MIR3|SINE|MIR -7006 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 134.75-30 chr2 45835646 45835840 + 1 NA intron (NM_005400, intron 1 of 14) AluJr|SINE|Alu 184068 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 209.25-53 chr8 138322389 138322709 + 1 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 174712 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 126.25-44 chr2 79198457 79198682 + 1 NA Intergenic Intergenic -38816 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 176.5-47 chr2 84687486 84687710 + 1 NA intron (NM_001370, intron 44 of 76) intron (NM_001370, intron 44 of 76) 171143 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 164.75-51 chr4 83902606 83903051 + 1 NA Intergenic HAL1M8|LINE|L1 366720 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 127.25-66 chr4 17366910 17367238 + 1 NA Intergenic MamRep137|DNA|TcMar-Tigger -46192 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 113.5-123 chr8 131902779 131902938 + 1 NA Intergenic AluSx|SINE|Alu -1235 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 151.25-20 chr14 83745741 83745919 + 1 NA Intergenic Intergenic 1103198 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 229.75-23 chr4 165059736 165060258 + 1 NA Intergenic Intergenic 27998 NM_001258025 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 180.5-37 chr2 38899774 38900082 + 1 NA Intergenic AluJr|SINE|Alu -19435 NM_001145451 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 160.75-37 chr2 236703377 236703704 + 1 NA Intergenic L2c|LINE|L2 133715 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 166.75-38 chr2 235398395 235398596 + 1 NA Intergenic Intergenic -95548 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 129.5-39 chr19 48084231 48084429 + 1 NA intron (NM_001159323, intron 10 of 16) AluSz|SINE|Alu 22959 NR_132364 106144526 Hs.622570 NR_132363 ENSG00000269420 PLA2G4C-AS1 - PLA2G4C antisense RNA 1 ncRNA 239.75-14 chr18 9507125 9507554 + 1 NA intron (NM_006788, intron 1 of 9) L1ME2z|LINE|L1 31826 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 140.5-8 chr10 89877033 89877273 + 1 NA intron (NR_149080, intron 1 of 1) MER103C|DNA|hAT-Charlie -10981 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 204.5-14 chr14 52409507 52409836 + 1 NA Intergenic L2c|LINE|L2 95359 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 125.5-65 chr2 57079772 57079942 + 1 NA Intergenic Intergenic -827794 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 141.5-106 chr7 40990125 40990292 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -10269 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 146.5-85 chr7 54386636 54386899 + 1 NA Intergenic Intergenic 56070 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 160.5-25 chr15 81273292 81273502 + 1 NA intron (NM_001352686, intron 6 of 18) intron (NM_001352686, intron 6 of 18) -23573 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 150.5-55 chr20 42551238 42551409 + 1 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -134160 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 157.25-56 chr7 3461122 3461309 + 1 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 159963 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 153.5-80 chr5 133567603 133567862 + 1 NA intron (NM_015082, intron 2 of 15) intron (NM_015082, intron 2 of 15) 44809 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 139.5-79 chr5 80892469 80892663 + 1 NA Intergenic Intergenic -67797 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 223.5-75 chr8 138353888 138354222 + 1 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 143206 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 119.5-17 chr10 116010446 116010591 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 184271 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 175.5-86 chr9 26153765 26154008 + 1 NA Intergenic Intergenic 87211 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 179.75-11 chr12 59748236 59748446 + 1 NA intron (NR_073056, intron 3 of 6) Tigger2b_Pri|DNA|TcMar-Tigger 58971 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 233.25-23 chr3 42827587 42827976 + 1 NA intron (NM_001296, intron 2 of 2) intron (NM_001296, intron 2 of 2) 18336 NM_001296 1238 Hs.146346 NM_001296 ENSG00000144648 ACKR2 CCBP2|CCR10|CCR9|CMKBR9|D6|hD6 atypical chemokine receptor 2 protein-coding 274.5-32 chr6 167483727 167484132 + 1 NA Intergenic AluSx|SINE|Alu -11139 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 208.5-70 chr7 79744253 79744635 + 1 NA Intergenic Intergenic 290484 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 221.75-13 chr2 67420479 67421027 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie 23420 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 200.5-14 chr11 79444105 79444316 + 1 NA Intergenic Intergenic -3180 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 142.5-55 chr3 88809723 88810048 + 1 NA Intergenic Intergenic -297736 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 174.5-66 chr4 108534923 108535142 + 1 NA Intergenic L1ME3G|LINE|L1 -22201 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 175.5-49 chr22 27391311 27391612 + 1 NA Intergenic L2a|LINE|L2 80810 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 133.5-64 chr3 49991990 49992139 + 1 NA intron (NM_001349190, intron 4 of 18) AluJb|SINE|Alu 51914 NM_001349193 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 153.5-20 chr11 97958823 97959130 + 1 NA Intergenic Intergenic -1061973 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 133.75-53 chr3 922686 922926 + 1 NA Intergenic L2a|LINE|L2 -170218 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 136.25-49 chr22 18075965 18076171 + 1 NA Intergenic Intergenic -1852 NM_001199319 55670 Hs.517400 NM_017929 ENSG00000215193 PEX26 PBD7A|PBD7B|PEX26M1T|Pex26pM1T peroxisomal biogenesis factor 26 protein-coding 116.5-64 chr2 163926813 163926986 + 1 NA Intergenic Intergenic -190891 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 282.5-16 chr4 120889302 120889644 + 1 NA intron (NM_001300824, intron 2 of 13) L1ME3A|LINE|L1 33393 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 122.5-56 chr3 58928027 58928207 + 1 NA intron (NR_147235, intron 6 of 6) L2c|LINE|L2 103646 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 192.5-53 chr7 93729612 93729838 + 1 NA Intergenic Intergenic 12797 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 172.5-48 chr3 117411781 117412034 + 1 NA Intergenic Intergenic 279018 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 147.75-71 chr6 158194031 158194185 + 1 NA 3' UTR (NM_207118, exon 3 of 3) 3' UTR (NM_207118, exon 3 of 3) 25761 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 202.5-50 chr7 37746350 37746695 + 1 NA Intergenic L1M6|LINE|L1 62756 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 121.5-16 chr10 77666415 77666607 + 1 NA Intergenic Intergenic -28703 NM_001271521 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 139.25-22 chr12 83456893 83457146 + 1 NA Intergenic Intergenic 769864 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 131.75-37 chr17 81016894 81017219 + 1 NA Intergenic L1MEf|LINE|L1 17663 NR_026857 440465 Hs.448889 NM_001004336 ENSG00000226137 BAIAP2-DT BAIAP2-AS1|lnc-BAIAP2 BAIAP2 divergent transcript ncRNA 170.25-68 chr8 141681904 141682102 + 1 NA Intergenic Intergenic 104310 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 163.75-23 chr14 69596619 69596921 + 1 NA Intergenic MER45R|DNA|hAT-Tip100 -14826 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 192.5-11 chr11 93951957 93952302 + 1 NA Intergenic Intergenic -69225 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 135.5-57 chr2 176486167 176486354 + 1 NA Intergenic Intergenic 114792 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 150.5-70 chr5 40397048 40397211 + 1 NA Intergenic Intergenic -282786 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 146.25-66 chr7 96882819 96883089 + 1 NA Intergenic L1MA3|LINE|L1 -122599 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 255.5-26 chr6 170561546 170561862 + 1 NA intron (NM_003194, intron 2 of 7) intron (NM_003194, intron 2 of 7) 7335 NM_003194 6908 Hs.590872 NM_003194 ENSG00000112592 TBP GTF2D|GTF2D1|HDL4|SCA17|TFIID TATA-box binding protein protein-coding 179.5-85 chr7 18075863 18076203 + 1 NA Intergenic L1MA8|LINE|L1 -10792 NM_001321872 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 267.5-2 chr1 214832489 214832835 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -172880 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 151.25-25 chr16 85282529 85282716 + 1 NA promoter-TSS (NR_038859) promoter-TSS (NR_038859) -336 NR_038859 197196 Hs.679002 NM_153238 ENSG00000179219 LINC00311 NCRNA00311|TMEM148 long intergenic non-protein coding RNA 311 ncRNA 153.5-13 chr10 86059915 86060306 + 1 NA intron (NM_017551, intron 4 of 15) Kanga2_a|DNA|TcMar-Tc2 204678 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 162.5-6 chr1 175214114 175214380 + 1 NA Intergenic L1M1|LINE|L1 -21260 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 158.25-60 chr7 5074482 5074652 + 1 NA Intergenic L1ME1|LINE|L1 2507 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 194.25-39 chr4 65103277 65103522 + 1 NA Intergenic Intergenic -98899 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 117.25-55 chr22 45900544 45900677 + 1 NA Intergenic L1MC2|LINE|L1 76552 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 150.5-41 chr2 21018835 21019137 + 1 NA intron (NM_000384, intron 20 of 28) intron (NM_000384, intron 20 of 28) 25087 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 132.25-17 chr11 60283624 60283785 + 1 NA intron (NM_024021, intron 2 of 7) intron (NM_024021, intron 2 of 7) 3038 NM_024021 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 225.25-18 chr22 24793047 24793290 + 1 NA Intergenic Intergenic -13043 NM_001039948 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 116.5-125 chr8 139206867 139207079 + 1 NA Intergenic Intergenic -292932 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 140.25-93 chr8 139213843 139214002 + 1 NA Intergenic Intergenic -299881 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 140.75-60 chr7 50617531 50617820 + 1 NA intron (NM_001350816, intron 9 of 17) intron (NM_001350816, intron 9 of 17) -52270 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 147.25-64 chr7 104320684 104320891 + 1 NA Intergenic L1MD1|LINE|L1 -7869 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 122.25-27 chr12 133218635 133218781 + 1 NA 3' UTR (NM_001191054, exon 9 of 9) 3' UTR (NM_001191054, exon 9 of 9) 17128 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 183.75-42 chr3 137733515 137733789 + 1 NA Intergenic L1PB1|LINE|L1 -30663 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 201.5-2 chr1 88809475 88809886 + 1 NA intron (NM_006256, intron 15 of 21) AluJr|SINE|Alu 81887 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 137.5-95 chr5 81426499 81426779 + 1 NA intron (NM_001345886, intron 15 of 15) intron (NM_001345886, intron 15 of 15) -32505 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 147.5-31 chr15 82190300 82190521 + 1 NA intron (NM_001040610, intron 13 of 17) intron (NM_001040610, intron 13 of 17) 72118 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1|SDS2 elongation factor like GTPase 1 protein-coding 149.5-95 chr6 76751392 76751605 + 1 NA Intergenic Intergenic -157875 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 182.5-10 chr1 240974615 240974898 + 1 NA intron (NM_001350116, intron 4 of 16) intron (NM_001350116, intron 4 of 16) -157516 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 213.75-26 chr18 44503834 44504160 + 1 NA intron (NR_110792, intron 2 of 4) L1M5|LINE|L1 27700 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 151.5-82 chr8 26796984 26797226 + 1 NA intron (NM_001322504, intron 1 of 1) Charlie1b|DNA|hAT-Charlie 68550 NM_033303 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 213.75-25 chr18 586231 586677 + 1 NA Intergenic AluSx|SINE|Alu 6074 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 211.5-30 chr2 222713134 222713463 + 1 NA Intergenic Intergenic 41640 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 174.25-54 chr6 132223043 132223425 + 1 NA Intergenic Intergenic 89256 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 185.25-34 chr3 44582014 44582289 + 1 NA intron (NM_001288592, intron 5 of 5) intron (NM_001288592, intron 5 of 5) -2813 NM_001351732 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 242.25-27 chr7 52013377 52013827 + 1 NA Intergenic Intergenic -620346 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 152.5-13 chr10 63398917 63399213 + 1 NA intron (NM_001322258, intron 1 of 24) L1MC5|LINE|L1 -26017 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 116.5-72 chr2 219494988 219495248 + 1 NA Intergenic Intergenic -1237 NM_001286811 100996693 Hs.21639 NM_001286811 ENSG00000286095 SPEGNB - SPEG neighbor protein-coding 162.5-15 chr11 26424344 26424578 + 1 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -49441 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 204.25-27 chr2 30781748 30782067 + 1 NA intron (NM_144575, intron 2 of 22) intron (NM_144575, intron 2 of 22) 25539 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 126.75-33 chr17 17896145 17896345 + 1 NA intron (NM_001288787, intron 3 of 13) intron (NM_001288787, intron 3 of 13) -59234 NM_004176 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 119.25-82 chr6 74745672 74745944 + 1 NA Intergenic Intergenic 382974 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 227.5-31 chr21 31650712 31651033 + 1 NA Intergenic L1MB7|LINE|L1 -8750 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 121.25-50 chr4 89424788 89424957 + 1 NA Intergenic Intergenic -117072 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 211.75-24 chr20 36657697 36658043 + 1 NA intron (NM_032013, intron 13 of 15) intron (NM_032013, intron 13 of 15) -11674 NM_175077 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 159.5-39 chr2 21699166 21699415 + 1 NA intron (NR_038837, intron 2 of 2) intron (NR_038837, intron 2 of 2) 11362 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 120.25-8 chr10 56947513 56947732 + 1 NA Intergenic Intergenic 356937 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 216.25-34 chr6 82553194 82553488 + 1 NA Intergenic MER57B2|LTR|ERV1 189097 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 161.75-28 chr20 4653488 4653783 + 1 NA Intergenic Intergenic -32821 NM_001080121 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 175.5-13 chr10 126075925 126076120 + 1 NA intron (NM_001288974, intron 11 of 18) L1PA16|LINE|L1 -102749 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 162.5-85 chr7 116693108 116693313 + 1 NA intron (NM_001324402, intron 1 of 19) intron (NM_001324402, intron 1 of 19) 21014 NM_000245 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 180.5-49 chr20 5224689 5225012 + 1 NA Intergenic Intergenic 91882 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 170.5-87 chr8 139794874 139795130 + 1 NA intron (NM_001160372, intron 21 of 22) MIR|SINE|MIR -91879 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 234.75-19 chr17 11480941 11481309 + 1 NA intron (NM_001173462, intron 3 of 4) AluSz6|SINE|Alu -117345 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 188.5-62 chrX 104686290 104686629 + 1 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 120260 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 204.5-37 chr20 37597623 37597931 + 1 NA Intergenic Intergenic 25342 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 188.5-4 chr1 174428784 174429118 + 1 NA intron (NM_001366446, intron 13 of 25) Charlie29a|DNA|hAT-Charlie -19013 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 117.75-64 chr5 38984264 38984599 + 1 NA intron (NM_001285439, intron 7 of 38) intron (NM_001285439, intron 7 of 38) 89968 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 120.25-40 chr20 19153597 19153743 + 1 NA Intergenic MIRc|SINE|MIR -58972 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 139.25-63 chr4 60310365 60310534 + 1 NA Intergenic Intergenic -612170 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 125.75-26 chr17 53253544 53253714 + 1 NA Intergenic Intergenic 268124 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 115.5-26 chr12 96871037 96871297 + 1 NA intron (NM_001306084, intron 67 of 67) L1MEf|LINE|L1 -36090 NM_152905 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 315.75-3 chr19 43400192 43400650 + 1 NA intron (NM_031451, intron 1 of 8) L1MC5a|LINE|L1 11810 NM_031451 83639 Hs.97978 NM_031451 ENSG00000131126 TEX101 CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP testis expressed 101 protein-coding 125.75-44 chr22 35121529 35121662 + 1 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 55437 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 201.5-68 chr9 87322595 87322971 + 1 NA Intergenic Intergenic 174139 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 199.5-43 chr5 57609620 57609893 + 1 NA intron (NR_120607, intron 4 of 5) L1MCa|LINE|L1 39414 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 141.5-64 chr2 187034815 187035092 + 1 NA Intergenic Intergenic -185783 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 135.5-85 chr5 121044494 121044694 + 1 NA Intergenic Intergenic -277956 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 150.75-83 chr9 123961617 123961809 + 1 NA Intergenic MIRb|SINE|MIR -31575 NM_001352964 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 195.75-27 chr3 18461510 18461789 + 1 NA intron (NR_125803, intron 1 of 6) intron (NR_125803, intron 1 of 6) -16057 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 130.25-36 chr17 47810077 47810273 + 1 NA intron (NM_145798, intron 18 of 22) intron (NM_145798, intron 18 of 22) 11619 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 133.75-64 chr5 17439044 17439223 + 1 NA intron (NR_134273, intron 1 of 1) intron (NR_134273, intron 1 of 1) 2396 NR_134273 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 133.5-47 chr2 31920183 31920443 + 1 NA intron (NR_126032, intron 4 of 6) intron (NR_126032, intron 4 of 6) 90351 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 137.25 chr1 24448480 24448664 + 1 NA intron (NM_001322857, intron 5 of 11) intron (NM_001322857, intron 5 of 11) 32547 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 117.5-36 chr17 63313562 63313812 + 1 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 126580 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 137.25-70 chr7 51658173 51658423 + 1 NA Intergenic Intergenic -265042 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 178.25-41 chr3 185135531 185135751 + 1 NA intron (NM_001025266, intron 1 of 1) L1MA4A|LINE|L1 17419 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 228.5-19 chr2 139487900 139488312 + 1 NA Intergenic L1PA13|LINE|L1 590782 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 119.75-35 chr16 59144179 59144472 + 1 NA Intergenic Intergenic -410009 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 135.25-66 chr4 11974229 11974484 + 1 NA Intergenic L1ME2|LINE|L1 191178 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 134.5-86 chr6 162754628 162754795 + 1 NA intron (NM_001080379, intron 1 of 4) L1MA7|LINE|L1 26741 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 115.75-88 chr7 22963379 22963519 + 1 NA intron (NM_032581, intron 8 of 10) L1MCc|LINE|L1 50681 NM_001363467 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 227.5-18 chr14 75528259 75528780 + 1 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 6050 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 188.5-16 chr14 83253493 83253911 + 1 NA Intergenic Intergenic 611070 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 238.25-7 chr15 61049194 61049452 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 179979 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 178.5-92 chr8 135761690 135761899 + 1 NA Intergenic L1M5|LINE|L1 304338 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 115.75-76 chr5 33418792 33419015 + 1 NA Intergenic AluSp|SINE|Alu -21793 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 122.25-66 chr3 180195322 180195637 + 1 NA Intergenic Intergenic -158542 NM_001256752 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 237.5-39 chr7 114102071 114102534 + 1 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 15975 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 153.5-17 chr11 12742085 12742394 + 1 NA intron (NM_021961, intron 2 of 12) MIRb|SINE|MIR 67818 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 194.75-26 chr22 40277016 40277423 + 1 NA intron (NM_015088, intron 7 of 20) intron (NM_015088, intron 7 of 20) -69281 NM_001123378 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 206.25-36 chr6 101406547 101406955 + 1 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 7766 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 267.25-7 chr2 66231056 66231403 + 1 NA Intergenic Intergenic 127099 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 150.25-33 chr17 66798129 66798309 + 1 NA intron (NM_002737, intron 16 of 16) intron (NM_002737, intron 16 of 16) 11147 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 283.25-16 chr8 30498365 30498737 + 1 NA intron (NM_001008710, intron 4 of 8) L1MC4|LINE|L1 -113150 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 125.75-11 chr10 73571018 73571280 + 1 NA intron (NR_146997, intron 4 of 21) AluSx|SINE|Alu 4526 NM_152586 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 125.25-46 chr2 191241121 191241309 + 1 NA Intergenic MIR|SINE|MIR -4189 NM_001330238 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 298.5-20 chr8 83220281 83220726 + 1 NA Intergenic L1PA15|LINE|L1 -183255 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 155.5-58 chr2 121101749 121102028 + 1 NA Intergenic Intergenic 183314 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 187.5-50 chr3 31953607 31953922 + 1 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -27986 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 130.75-9 chr1 201632792 201633043 + 1 NA Intergenic Intergenic -15405 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 210.75-5 chr1 218731904 218732339 + 1 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 186390 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 261.25-13 chr8 110002305 110002847 + 1 NA Intergenic L1MA2|LINE|L1 -26805 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 139.25-13 chr10 100585797 100586054 + 1 NA Intergenic Intergenic 49982 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 135.5-93 chr6 97293162 97293418 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -10074 NM_001350600 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 186.5-38 chr2 209611951 209612274 + 1 NA intron (NM_001039538, intron 3 of 14) intron (NM_001039538, intron 3 of 14) 32433 NM_031847 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 146.75-43 chr5 27527897 27528138 + 1 NA Intergenic L1P4a|LINE|L1 55725 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 197.25-8 chr10 63960473 63960692 + 1 NA Intergenic THE1A|LTR|ERVL-MaLR -438692 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 221.5-8 chr12 9672261 9672615 + 1 NA intron (NM_001197319, intron 1 of 2) L1MC1|LINE|L1 2725 NR_036693 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 117.5-25 chr14 101810647 101810764 + 1 NA intron (NM_178586, intron 1 of 12) intron (NM_178586, intron 1 of 12) 842 NM_001352912 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 236.75-13 chr2 110145811 110146270 + 1 NA intron (NM_207181, intron 14 of 19) MIR|SINE|MIR -29474 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 154.5-45 chr2 191731742 191731987 + 1 NA Intergenic L2a|LINE|L2 41683 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 236.5-3 chr1 110692835 110693317 + 1 NA Intergenic Intergenic -18136 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 130.75-6 chr1 161801118 161801341 + 1 NA intron (NM_007348, intron 6 of 15) intron (NM_007348, intron 6 of 15) 34909 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 131.5-98 chr8 123791660 123791958 + 1 NA intron (NM_144963, intron 15 of 23) MER105|DNA|hAT-Charlie 23370 NM_144963 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 176.75-37 chr4 62507502 62507694 + 1 NA Intergenic L2|LINE|L2 -345833 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 249.25-17 chr3 75001268 75001649 + 1 NA Intergenic Intergenic -213018 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 300.75-8 chr4 76263564 76264008 + 1 NA exon (NM_001242936, exon 3 of 8) exon (NM_001242936, exon 3 of 8) 12065 NM_001136570 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 192.5-4 chr10 11033825 11034172 + 1 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 15242 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 165.75-9 chr10 121098155 121098363 + 1 NA Intergenic Intergenic 246897 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 147.5-56 chr3 1964891 1965169 + 1 NA Intergenic Intergenic -133773 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 158.5-106 chr8 138174689 138174905 + 1 NA intron (NM_015912, intron 11 of 19) L2a|LINE|L2 -91252 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 156.75 chr1 14593377 14593628 + 1 NA Intergenic Intergenic -5183 NM_001370230 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 149.5-39 chr16 58368389 58368616 + 1 NA Intergenic L1MB3|LINE|L1 -23969 NM_001126129 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 189.5-19 chr16 57278949 57279243 + 1 NA intron (NM_015993, intron 1 of 3) intron (NM_015993, intron 1 of 3) 5576 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 272.5-10 chr3 60221805 60222113 + 1 NA intron (NM_001320900, intron 6 of 9) L2a|LINE|L2 -141050 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 164.25-32 chr2 126487527 126487763 + 1 NA Intergenic L1MEg|LINE|L1 -168290 NM_001256584 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 121.75-85 chr7 132564625 132564809 + 1 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 11753 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 167.25-81 chr8 50642952 50643160 + 1 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 478925 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 139.5-68 chr4 63515498 63515650 + 1 NA Intergenic L1MCa|LINE|L1 893876 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 123.5-114 chr8 142905406 142905560 + 1 NA Intergenic HERVL74-int|LTR|ERVL 12360 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 123.25-19 chr12 93252729 93253002 + 1 NA intron (NR_040096, intron 2 of 4) HUERS-P1-int|LTR|ERV1 78499 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 145.5-91 chr7 144907983 144908267 + 1 NA Intergenic Intergenic -72072 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 144.5-95 chr6 43711400 43711674 + 1 NA Intergenic L2a|LINE|L2 -23725 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 154.25-54 chr6 5531779 5532152 + 1 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) -73890 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 193.5-58 chr5 14839895 14840191 + 1 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) -14031 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 154.5-19 chr11 65273376 65273642 + 1 NA intron (NM_002689, intron 4 of 17) MamRep605|LTR?|LTR? 11547 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 194.5-70 chr7 96829455 96829714 + 1 NA Intergenic Intergenic -119693 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 116.25-23 chr14 95615587 95615801 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -36403 NR_152604 27004 Hs.510368 NM_012468 TCL6 TNG1|TNG2 T cell leukemia/lymphoma 6 ncRNA 180.5-94 chr8 137886384 137886643 + 1 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 197032 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 152.5-53 chr2 206753442 206753701 + 1 NA intron (NR_138468, intron 4 of 11) intron (NR_138468, intron 4 of 11) 11757 NR_138468 130752 Hs.147816 NM_206892 ENSG00000138400 MDH1B RP11-95H11 malate dehydrogenase 1B protein-coding 169.5-13 chr11 43641436 43641883 + 1 NA Intergenic Intergenic -39079 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 156.5-54 chr4 80815845 80816055 + 1 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -214758 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 135.75-28 chr14 38896384 38896566 + 1 NA intron (NR_039982, intron 1 of 4) Charlie15a|DNA|hAT-Charlie 13879 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 228.25-32 chr6 62304350 62304618 + 1 NA Intergenic AluSx1|SINE|Alu -18257 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 133.5-17 chr11 4102820 4103009 + 1 NA intron (NM_001318064, intron 2 of 17) intron (NM_001318064, intron 2 of 17) 8115 NM_001033 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 129.5-37 chr16 87313965 87314210 + 1 NA intron (NM_001195124, intron 3 of 6) L1ME1|LINE|L1 3305 NM_001195125 100506581 Hs.729380 NM_001195124 ENSG00000260456 C16orf95 - chromosome 16 open reading frame 95 protein-coding 179.25-3 chr1 157918433 157918849 + 1 NA Intergenic Intergenic -7326 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 204.25-34 chr22 38512488 38512746 + 1 NA Intergenic Intergenic -6306 NM_006386 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 145.5-67 chr4 33182102 33182282 + 1 NA Intergenic L1PBa|LINE|L1 831154 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 219.5-3 chr1 86212830 86213091 + 1 NA Intergenic Intergenic -55976 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 144.75-15 chr10 75862901 75863080 + 1 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 80229 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 208.25-17 chr20 36464791 36465031 + 1 NA intron (NM_183006, intron 1 of 6) MIRb|SINE|MIR 3116 NM_183006 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 238.5-37 chr8 47131416 47131806 + 1 NA Intergenic Intergenic -57696 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 231.25-4 chr1 209724745 209725081 + 1 NA promoter-TSS (NR_134509) promoter-TSS (NR_134509) -788 NR_134509 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 122.5-14 chr11 4701992 4702217 + 1 NA Intergenic Intergenic -4251 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 135.25-82 chr5 144946986 144947186 + 1 NA Intergenic Intergenic 741695 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 131.75-22 chr12 46260326 46260482 + 1 NA intron (NM_001278387, intron 1 of 17) UCON33|DNA|TcMar-Tigger 6112 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 187.25-28 chr2 24032053 24032300 + 1 NA intron (NM_001142319, intron 2 of 2) AluJr|SINE|Alu 15215 NM_025203 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|MMAP|PP384 WD repeat and coiled coil containing protein-coding 125.5-93 chr4 66124948 66125188 + 1 NA Intergenic Intergenic -151756 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 157.5-70 chr3 157918976 157919227 + 1 NA Intergenic Intergenic 187062 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 153.75-74 chr7 3146781 3146966 + 1 NA intron (NR_126024, intron 3 of 3) intron (NR_126024, intron 3 of 3) 11700 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 240.75-21 chr2 210539423 210539804 + 1 NA intron (NM_001369256, intron 1 of 38) LTR81B|LTR|Gypsy -9512 NR_161225 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 126.25-4 chr1 70457380 70457575 + 1 NA Intergenic MER65C|LTR|ERV1 46209 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 146.5-14 chr11 11525121 11525301 + 1 NA intron (NM_001363464, intron 1 of 9) L2c|LINE|L2 96794 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 174.25-58 chr8 113764549 113764771 + 1 NA Intergenic MER90a|LTR|ERV1 -327721 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 138.5-106 chr8 104869185 104869474 + 1 NA Intergenic Intergenic -280305 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 211.5-12 chr13 47587000 47587364 + 1 NA Intergenic L1P4|LINE|L1 345440 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 133.5-81 chr4 99874615 99874842 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 19699 NM_021970 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 113.75-78 chr3 172755212 172755362 + 1 NA intron (NM_001349097, intron 3 of 26) intron (NM_001349097, intron 3 of 26) 4285 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 147.5-63 chr4 30822187 30822479 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 101964 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 194.25-36 chr3 48841805 48842110 + 1 NA intron (NM_001321982, intron 1 of 11) intron (NM_001321982, intron 1 of 11) 5917 NM_001321989 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 128.5-94 chr7 144739696 144739897 + 1 NA promoter-TSS (NR_146936) promoter-TSS (NR_146936) -898 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 267.75-20 chr9 29955540 29956038 + 1 NA Intergenic L1PB3|LINE|L1 452665 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 178.5-61 chr5 43714025 43714238 + 1 NA Intergenic Intergenic -110901 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 171.5-8 chr10 53951343 53951557 + 1 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -534780 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 133.75-28 chr15 54611296 54611686 + 1 NA intron (NM_001329919, intron 29 of 31) intron (NM_001329919, intron 29 of 31) -445256 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 170.5-46 chr20 58878512 58878726 + 1 NA intron (NR_126334, intron 3 of 4) intron (NR_126334, intron 3 of 4) -9794 NR_132273 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 160.75 chr1 45305110 45305363 + 1 NA non-coding (NR_024270, exon 1 of 1) non-coding (NR_024270, exon 1 of 1) 1326 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 274.5-24 chr5 3131073 3131521 + 1 NA Intergenic MLT2C2|LTR|ERVL -46538 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 171.75-52 chr6 133066779 133067262 + 1 NA Intergenic L2a|LINE|L2 -21060 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 186.75-2 chr1 93784230 93784670 + 1 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -9067 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 170.5-52 chr3 103083330 103083657 + 1 NA Intergenic Intergenic 440623 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 222.5-10 chr11 24036055 24036312 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR -460870 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 177.25-26 chr2 156212260 156212603 + 1 NA intron (NR_110250, intron 1 of 3) L1PREC2|LINE|L1 42500 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 170.75-57 chr5 69206993 69207256 + 1 NA intron (NM_022909, intron 7 of 8) intron (NM_022909, intron 7 of 8) -10636 NM_033281 92259 Hs.631971 NM_033281 ENSG00000134056 MRPS36 DC47|MRP-S36 mitochondrial ribosomal protein S36 protein-coding 211.5-41 chr5 84517679 84518096 + 1 NA Intergenic L1PA13|LINE|L1 -133007 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 185.5-11 chr10 84355956 84356310 + 1 NA intron (NM_018999, intron 1 of 10) intron (NM_018999, intron 1 of 10) 27544 NM_001351292 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 133.5-48 chr2 55585221 55585434 + 1 NA intron (NM_020463, intron 6 of 14) intron (NM_020463, intron 6 of 14) 32295 NM_001282850 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 139.75-69 chr8 24427765 24428038 + 1 NA intron (NR_125808, intron 1 of 5) (A)n|Simple_repeat|Simple_repeat -13125 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 148.25-69 chr8 69806690 69806868 + 1 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 26390 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 250.75-17 chr5 15524468 15524966 + 1 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 23279 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 166.5-40 chr15 78041263 78041474 + 1 NA intron (NM_144572, intron 3 of 12) Tigger13a|DNA|TcMar-Tigger 36284 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 145.75-60 chr5 16985924 16986233 + 1 NA Intergenic Intergenic -49790 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 150.5-78 chr6 36818214 36818477 + 1 NA intron (NM_020939, intron 3 of 20) intron (NM_020939, intron 3 of 20) 21099 NM_020939 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 123.25-16 chr11 48055305 48055647 + 1 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) -41306 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 169.75-26 chr14 101401332 101401533 + 1 NA Intergenic Intergenic 6490 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 139.25-78 chr8 68080102 68080331 + 1 NA intron (NM_024870, intron 15 of 39) intron (NM_024870, intron 15 of 39) 128170 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 258.5-11 chr3 154941102 154941434 + 1 NA Intergenic L1MA5A|LINE|L1 -82856 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 120.5-31 chr13 114173757 114173994 + 1 NA Intergenic Intergenic -41252 NM_001320821 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 132.5 chr1 29450335 29450589 + 1 NA Intergenic MLT1G|LTR|ERVL-MaLR -100348 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 134.25-9 chr10 62620901 62621140 + 1 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 100572 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 188.75-54 chr8 141927273 141927563 + 1 NA Intergenic L5|LINE|RTE-X -141105 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 164.5-51 chr3 31012327 31012640 + 1 NA Intergenic Intergenic -117822 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 113.5-12 chr10 12057498 12057611 + 1 NA Intergenic Intergenic -11400 NM_018706 55526 Hs.104980 NM_018706 ENSG00000181192 DHTKD1 AMOXAD|CMT2Q dehydrogenase E1 and transketolase domain containing 1 protein-coding 237.75-48 chrX 74059193 74059466 + 1 NA intron (NR_028379, intron 5 of 6) L1MB2|LINE|L1 115005 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 288.5-8 chr2 7484342 7484961 + 1 NA Intergenic L1ME1|LINE|L1 63390 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 113.25-29 chr12 57561421 57561543 + 1 NA intron (NM_001354705, intron 1 of 25) intron (NM_001354705, intron 1 of 25) 11438 NM_004984 3798 Hs.151219 NM_004984 ENSG00000155980 KIF5A ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10 kinesin family member 5A protein-coding 216.25-14 chr16 48619299 48619651 + 1 NA Intergenic L2a|LINE|L2 -9295 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 174.5-36 chr19 36396120 36396391 + 1 NA intron (NM_001321917, intron 4 of 4) AluJo|SINE|Alu -17054 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 192.25-17 chr14 48695877 48696273 + 1 NA Intergenic Intergenic 890305 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 142.75-12 chr10 25678585 25678750 + 1 NA intron (NR_108069, intron 3 of 3) intron (NR_108069, intron 3 of 3) 26955 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 114.25-47 chr18 59447555 59447694 + 1 NA intron (NM_133459, intron 7 of 10) intron (NM_133459, intron 7 of 10) -88359 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 113.75-47 chr18 33186559 33186672 + 1 NA intron (NM_001308126, intron 20 of 23) MamRep1527|LTR|LTR 253956 NM_001371121 205.5-9 chr11 40168919 40169298 + 1 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 124022 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 151.75-15 chr12 2445042 2445331 + 1 NA intron (NM_199460, intron 3 of 49).2 L2b|LINE|L2 175410 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 223.5-16 chr11 29231430 29231783 + 1 NA Intergenic L2a|LINE|L2 -362807 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 205.25-18 chr2 167044038 167044422 + 1 NA intron (NM_152381, intron 2 of 10) L1PA15|LINE|L1 96725 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 153.75-81 chr8 14241493 14241867 + 1 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 611830 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 197.5-61 chr8 144172990 144173356 + 1 NA intron (NM_001099281, intron 3 of 11) AluSz6|SINE|Alu 24528 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 215.5-16 chr14 69082545 69082890 + 1 NA intron (NM_003861, intron 6 of 8) intron (NM_003861, intron 6 of 8) 69882 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 206.5-50 chr7 39286735 39287059 + 1 NA intron (NM_001370959, intron 4 of 9) AluJr|SINE|Alu 42237 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 161.75-49 chr6 93002387 93002684 + 1 NA Intergenic MLT2A1|LTR|ERVL 417024 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 183.5-15 chr11 37453625 37453885 + 1 NA Intergenic Intergenic -484846 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 207.75-8 chr10 123776567 123776929 + 1 NA intron (NM_198148, intron 7 of 13) L1ME4c|LINE|L1 110393 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 170.5-62 chr5 50736563 50736814 + 1 NA intron (NM_024615, intron 2 of 25) LTR37A|LTR|ERV1 69274 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 155.5-65 chr20 51780914 51781116 + 1 NA Intergenic Intergenic -12625 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 133.5-53 chr2 220719180 220719428 + 1 NA Intergenic Intergenic -812739 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 141.5-53 chr2 30841282 30841536 + 1 NA Intergenic L2c|LINE|L2 -33963 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 151.5-21 chr12 2409408 2409593 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 139724 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 143.75-8 chr10 6469682 6469892 + 1 NA intron (NM_001282644, intron 12 of 17) intron (NM_001282644, intron 12 of 17) 110489 NM_001282644 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 222.5-4 chr1 146011210 146011568 + 1 NA Intergenic AluSz|SINE|Alu 10346 NM_001316767 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 123.5-86 chr5 53444775 53444969 + 1 NA Intergenic Intergenic -35757 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 122.25-100 chr9 76123802 76123934 + 1 NA intron (NR_120409, intron 9 of 19) intron (NR_120409, intron 9 of 19) 233195 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 222.5-37 chr4 97927156 97927454 + 1 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 216171 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 283.25-10 chr4 47674996 47675413 + 1 NA intron (NM_006587, intron 9 of 21) intron (NM_006587, intron 9 of 21) 22535 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 247.5-53 chrX 113775948 113776286 + 1 NA intron (NR_131204, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 162101 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 135.75-14 chr10 39460238 39460487 + 1 NA Intergenic ALR/Alpha|Satellite|centr 763766 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 140.5-35 chr18 4520093 4520299 + 1 NA Intergenic Intergenic -64889 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 159.75-15 chr13 97252231 97252438 + 1 NA intron (NM_144778, intron 1 of 8) L1ME4a|LINE|L1 30001 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 128.5-80 chr5 148616239 148616487 + 1 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 20698 NM_001040173 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 148.25-58 chr5 39590395 39590598 + 1 NA Intergenic Intergenic 70065 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 142.75-57 chr3 161338991 161339229 + 1 NA Intergenic Intergenic 32973 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 186.25-3 chr1 187408726 187409066 + 1 NA Intergenic HAL1|LINE|L1 -34732 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 146.5-28 chr14 89912058 89912339 + 1 NA intron (NM_001284269, intron 5 of 5) intron (NM_001284269, intron 5 of 5) 42338 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 166.5-78 chr4 182520355 182520562 + 1 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 277056 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 167.5-72 chr5 123171610 123171831 + 1 NA intron (NM_001136239, intron 6 of 7) intron (NM_001136239, intron 6 of 7) -81404 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 147.5-30 chr15 73307363 73307785 + 1 NA Intergenic AluSg4|SINE|Alu 7664 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 204.5-65 chr8 132844721 132845127 + 1 NA intron (NM_001277196, intron 19 of 19) intron (NM_001277196, intron 19 of 19) -22034 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 177.5-33 chr2 99022964 99023400 + 1 NA intron (NM_001349013, intron 13 of 16) AluJo|SINE|Alu -86957 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 115.75-68 chr4 31248145 31248391 + 1 NA Intergenic L1M3f|LINE|L1 77124 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 203.25-51 chr7 156461123 156461477 + 1 NA Intergenic Intergenic -15712 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 310.5-4 chr2 74666650 74667081 + 1 NA intron (NM_001271662, intron 4 of 12) intron (NM_001271662, intron 4 of 12) 12618 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 127.75-96 chr8 83027133 83027460 + 1 NA Intergenic Intergenic 115192 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 198.25-30 chr3 171671301 171671601 + 1 NA intron (NM_002662, intron 19 of 26) intron (NM_002662, intron 19 of 26) 139032 NM_001130081 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 138.25-64 chr4 36981244 36981463 + 1 NA Intergenic Intergenic -20426 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 168.25-61 chr8 30180015 30180331 + 1 NA intron (NM_006571, intron 5 of 6) MIRb|SINE|MIR 23804 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 166.75-53 chr6 51960403 51960743 + 1 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 127040 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 158.75-46 chr3 189266773 189267034 + 1 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -26309 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 183.75-48 chr6 92152124 92152450 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -461859 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 220.25-8 chr10 92172879 92173234 + 1 NA intron (NM_001178137, intron 4 of 9) L2a|LINE|L2 70223 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 127.25-74 chr4 144701445 144701714 + 1 NA intron (NM_022475, intron 4 of 12) L2a|LINE|L2 55423 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 155.5-100 chr9 134001831 134002066 + 1 NA Intergenic AluSq2|SINE|Alu -9624 NM_001134398 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 170.5-42 chr2 179441887 179442092 + 1 NA TTS (NR_148055) TTS (NR_148055) 120599 NM_001113398 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 168.75-48 chr5 104529787 104530110 + 1 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -569526 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 156.25-75 chr9 102924033 102924220 + 1 NA Intergenic Intergenic -71207 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 183.5-78 chr8 139328320 139328593 + 1 NA Intergenic L1ME3|LINE|L1 374667 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 141.75-74 chr6 41117558 41117824 + 1 NA intron (NR_026938, intron 8 of 22) intron (NR_026938, intron 8 of 22) 16657 NR_026938 221442 Hs.374076 NM_001010871 ENSG00000161912 ADCY10P1 - ADCY10 pseudogene 1 pseudo 143.25-28 chr15 63265368 63265618 + 1 NA 3' UTR (NM_016530, exon 8 of 8) 3' UTR (NM_016530, exon 8 of 8) -12057 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 192.25-9 chr10 7158696 7159004 + 1 NA 3' UTR (NM_001018039, exon 21 of 21) 3' UTR (NM_001018039, exon 21 of 21) 27934 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 124.5-3 chr1 102592535 102592708 + 1 NA Intergenic Intergenic 515875 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 139.75-56 chr3 112684672 112684963 + 1 NA Intergenic Intergenic -43674 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 172.5-42 chr20 15437325 15437554 + 1 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 240599 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 224.25-20 chr2 134171284 134171612 + 1 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 44323 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 184.75-4 chr1 97522792 97523098 + 1 NA intron (NM_000110, intron 12 of 22) intron (NM_000110, intron 12 of 22) -273976 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 170.25-33 chr2 38775088 38775432 + 1 NA Intergenic AluJo|SINE|Alu -2950 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 161.25-49 chr20 51295253 51295543 + 1 NA Intergenic Intergenic 157579 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 118.5-108 chr7 100033549 100033764 + 1 NA exon (NM_001287055, exon 4 of 4) exon (NM_001287055, exon 4 of 4) -16118 NM_001362781 7589 Hs.632294 NM_145914 ENSG00000166529 ZSCAN21 NY-REN-21|ZNF38|Zipro1 zinc finger and SCAN domain containing 21 protein-coding 132.25-21 chr12 24120069 24120351 + 1 NA intron (NM_152989, intron 4 of 17) L1ME3A|LINE|L1 -92211 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 150.5-10 chr11 73378228 73378481 + 1 NA intron (NM_032871, intron 1 of 10) intron (NM_032871, intron 1 of 10) 1686 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 162.5-78 chr6 91520777 91521051 + 1 NA promoter-TSS (NR_039786) promoter-TSS (NR_039786) -746 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 151.25-29 chr18 5905820 5906175 + 1 NA Intergenic Intergenic -10043 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 157.5-21 chr13 94477730 94477925 + 1 NA intron (NM_001322185, intron 1 of 7) intron (NM_001322185, intron 1 of 7) 1855 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 130.5-80 chr6 88214331 88214524 + 1 NA Intergenic Intergenic -47078 NM_001370546 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 156.5-30 chr2 21732655 21732882 + 1 NA Intergenic L1PA14|LINE|L1 -22116 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 152.5-109 chrX 67844674 67844970 + 1 NA Intergenic L1M4c|LINE|L1 300199 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 208.75-32 chr9 96106103 96106451 + 1 NA TTS (NR_132344) TTS (NR_132344) 10134 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 127.25-99 chr9 72171117 72171368 + 1 NA intron (NM_001351571, intron 1 of 13) L1MEd|LINE|L1 21802 NM_001351573 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 176.5-44 chr2 15625874 15626123 + 1 NA intron (NM_004939, intron 19 of 25) intron (NM_004939, intron 19 of 25) 34130 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 171.25-49 chr7 7549196 7549490 + 1 NA TTS (NR_110084) TTS (NR_110084) -13470 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 207.5-54 chr7 12012107 12012411 + 1 NA Intergenic Intergenic -180061 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 349.25-3 chr22 49679285 49679801 + 1 NA Intergenic Intergenic -22024 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 174.25-28 chr17 68108817 68109021 + 1 NA intron (NR_027418, intron 3 of 5) L1M5|LINE|L1 7364 NR_027418 100499466 Hs.591212 NR_027418 LINC00674 - long intergenic non-protein coding RNA 674 ncRNA 135.25-27 chr14 47654939 47655275 + 1 NA intron (NM_001113498, intron 1 of 16) L3b|LINE|CR1 19847 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 115.5-2 chr1 59179774 59179918 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -33039 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 165.75-11 chr10 129192349 129192594 + 1 NA Intergenic Intergenic -274770 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 159.5-5 chr1 119149120 119149305 + 1 NA intron (NR_125975, intron 3 of 6) AluY|SINE|Alu -8540 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 132.5-111 chr8 56357751 56357925 + 1 NA Intergenic L1PA15|LINE|L1 32872 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 125.5-23 chr10 120654157 120654295 + 1 NA Intergenic Intergenic 56277 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 132.5-77 chr3 107387509 107387657 + 1 NA Intergenic Intergenic -5424 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 279.25-6 chr13 52359451 52359876 + 1 NA Intergenic Intergenic 25368 NR_120400 103191607 NR_120400 ENSG00000271564 LINC02333 - long intergenic non-protein coding RNA 2333 ncRNA 203.25-46 chr6 109808841 109809210 + 1 NA intron (NM_014845, intron 22 of 22) Charlie1a|DNA|hAT-Charlie 117804 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 139.25-20 chr12 52563371 52563708 + 1 NA Intergenic L1MB5|LINE|L1 10304 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 270.25-3 chr10 102414915 102415241 + 1 NA exon (NM_001270965, exon 5 of 18) exon (NM_001270965, exon 5 of 18) 3707 NM_002779 5662 Hs.154658 NM_002779 ENSG00000059915 PSD EFA6|EFA6A|PSD1|TYL pleckstrin and Sec7 domain containing protein-coding 167.75-21 chr14 62988974 62989176 + 1 NA intron (NM_139318, intron 4 of 10) L2c|LINE|L2 56383 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 220.5-28 chr2 233513275 233513601 + 1 NA intron (NM_001365479, intron 18 of 31) Tigger6a|DNA|TcMar-Tigger 52135 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 119.5-125 chr9 4629319 4629462 + 1 NA intron (NR_148443, intron 2 of 7) MIR|SINE|MIR 32833 NM_001353488 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 153.5-59 chr3 8889545 8889807 + 1 NA intron (NM_020165, intron 12 of 12) L2b|LINE|L2 73796 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 157.75-78 chr8 113918512 113918712 + 1 NA Intergenic Intergenic -481673 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 177.75-38 chr4 33481448 33481845 + 1 NA Intergenic Intergenic 558247 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 185.75-30 chr2 77837135 77837482 + 1 NA intron (NR_110288, intron 3 of 3) LTR49-int|LTR|ERV1 -78626 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 148.5-15 chr11 90986115 90986398 + 1 NA Intergenic Intergenic -117054 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 238.25-4 chr12 5925608 5925955 + 1 NA intron (NM_001278597, intron 1 of 25) intron (NM_001278597, intron 1 of 25) 19478 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 261.5-2 chr1 73315676 73316052 + 1 NA intron (NR_110676, intron 3 of 3) intron (NR_110676, intron 3 of 3) 9694 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 309.5-9 chr2 105312273 105312616 + 1 NA intron (NR_137328, intron 1 of 12) intron (NR_137328, intron 1 of 12) 17212 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 142.5-64 chr4 76790272 76790513 + 1 NA Intergenic L1MA5|LINE|L1 107752 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 233.25-39 chr9 30430649 30430915 + 1 NA Intergenic L1MA3|LINE|L1 -22328 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 161.25-40 chr2 59151332 59151628 + 1 NA Intergenic LTR33|LTR|ERVL -66228 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 210.5-46 chr4 94254673 94254972 + 1 NA intron (NM_001254949, intron 1 of 15) intron (NM_001254949, intron 1 of 15) 1513 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 190.5-41 chr21 23834630 23834897 + 1 NA Intergenic LTR1D|LTR|ERV1 -449928 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 154.25-38 chr2 49924566 49924774 + 1 NA intron (NM_001330097, intron 5 of 5) intron (NM_001330097, intron 5 of 5) 49533 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 161.5-52 chr2 177699156 177699423 + 1 NA intron (NR_136171, intron 2 of 4) Tigger3a|DNA|TcMar-Tigger 25967 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 225.5-7 chr1 169123853 169124351 + 1 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 17412 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 180.25-15 chr13 94258586 94258843 + 1 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -70723 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 221.5-15 chr17 53172253 53172474 + 1 NA Intergenic Intergenic 186858 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 119.25-49 chr2 59984147 59984311 + 1 NA Intergenic Intergenic 398807 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 222.75-39 chr6 38034595 38034852 + 1 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 214996 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 422.75-2 chr5 39069494 39070145 + 1 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 4580 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 137.75-62 chr4 56083293 56083493 + 1 NA Intergenic Intergenic -86802 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 262.25-10 chr18 22633195 22633515 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 153482 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 136.75-18 chr11 64334681 64334850 + 1 NA Intergenic AluJb|SINE|Alu -5439 NM_032251 283234 Hs.98564 NM_032251 ENSG00000168071 CCDC88B BRLZ|CCDC88|HKRP3|gipie coiled-coil domain containing 88B protein-coding 151.5-45 chr20 24748711 24748905 + 1 NA Intergenic HAL1M8|LINE|L1 -200461 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 144.5-81 chr4 111453686 111453844 + 1 NA Intergenic Intergenic -593118 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 190.75-3 chr1 51864542 51864913 + 1 NA intron (NM_001101662, intron 1 of 30) AluSz|SINE|Alu 13313 NM_001242361 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 151.5-58 chr4 162997722 162997948 + 1 NA Intergenic Intergenic 95793 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 172.5-54 chr4 188228481 188228802 + 1 NA Intergenic Intergenic 89200 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 173.5-67 chr3 121714668 121714978 + 1 NA intron (NM_001256486, intron 10 of 21) intron (NM_001256486, intron 10 of 21) 34918 NM_004487 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 201.5-56 chr7 43311990 43312222 + 1 NA intron (NM_001287059, intron 3 of 27) Charlie15b|DNA|hAT-Charlie 161211 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 155.75-52 chr5 84724753 84725007 + 1 NA Intergenic Intergenic -340000 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 170.75-54 chr5 19971042 19971358 + 1 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 17000 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 122.75-63 chr5 9480541 9480744 + 1 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -30691 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 152.5-36 chr14 80221113 80221366 + 1 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -9061 NM_001324462 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 196.25-2 chr1 82679150 82679387 + 1 NA Intergenic Charlie23a|DNA|hAT-Charlie -223915 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 137.5-99 chr5 178148024 178148187 + 1 NA 3' UTR (NM_022762, exon 11 of 11) 3' UTR (NM_022762, exon 11 of 11) 5855 NM_001034833 55651 Hs.744074 NM_017838 ENSG00000145912 NHP2 DKCB2|NHP2P|NOLA2 NHP2 ribonucleoprotein protein-coding 158.25-67 chr8 88259205 88259382 + 1 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 68190 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 133.5-99 chr6 74173048 74173211 + 1 NA intron (NR_110856, intron 1 of 3) L1MC5|LINE|L1 103678 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 153.5-85 chr6 147844124 147844343 + 1 NA Intergenic L1MA7|LINE|L1 335543 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 211.75-14 chr12 33698693 33699129 + 1 NA Intergenic Intergenic -259092 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 158.5-51 chr2 5023746 5024019 + 1 NA Intergenic L1MA8|LINE|L1 -367660 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 123.75-12 chr10 21548216 21548494 + 1 NA intron (NM_001195626, intron 3 of 22) L1MEd|LINE|L1 14183 NM_004641 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 134.75-21 chr17 57900756 57900933 + 1 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 2545 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 238.25-18 chr22 49192855 49193197 + 1 NA Intergenic Intergenic 326256 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 231.25-5 chr10 64931156 64931512 + 1 NA Intergenic Intergenic -6816 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 165.5-28 chr14 20535657 20535853 + 1 NA Intergenic MLT1E3|LTR|ERVL-MaLR 25176 NM_001110358 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 129.25-49 chr20 43012867 43013092 + 1 NA intron (NM_133170, intron 1 of 31) LTR16A1|LTR|ERVL 44236 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 235.25 chr1 55772715 55773015 + 1 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 172098 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 167.5-65 chr5 54611029 54611392 + 1 NA Intergenic Intergenic 92114 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 134.5-28 chr16 8544445 8544633 + 1 NA intron (NM_001290098, intron 2 of 2) intron (NM_001290098, intron 2 of 2) 45299 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 187.25-7 chr1 196610693 196611156 + 1 NA Intergenic Intergenic -2484 NM_198503 343450 Hs.657046 NM_198503 ENSG00000162687 KCNT2 EIEE57|KCa4.2|SLICK|SLO2.1 potassium sodium-activated channel subfamily T member 2 protein-coding 155.5-86 chr6 102241886 102242183 + 1 NA Intergenic Intergenic 843049 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 139.75-20 chr12 42001268 42001457 + 1 NA Intergenic MamGypLTR2c|LTR|Gypsy 143512 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 140.25-58 chr3 137143658 137143819 + 1 NA Intergenic HAL1|LINE|L1 185755 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 145.75-4 chr10 58769708 58770023 + 1 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 54850 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 330.5-13 chr8 130702103 130702722 + 1 NA Intergenic Intergenic -258738 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 260.25-20 chr4 121708238 121708817 + 1 NA Intergenic Intergenic -11547 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 161.25-36 chr2 16262305 16262646 + 1 NA Intergenic Intergenic 212048 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 141.5-114 chr8 128330993 128331209 + 1 NA Intergenic Intergenic 180985 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 128.5-37 chr19 17578516 17578762 + 1 NA intron (NM_024656, intron 9 of 11) AluSz6|SINE|Alu 22990 NM_024656 79709 Hs.418795 NM_024656 ENSG00000130309 COLGALT1 BSVD3|ColGalT 1|GLT25D1 collagen beta(1-O)galactosyltransferase 1 protein-coding 154.75-54 chr5 124161717 124161951 + 1 NA intron (NR_125774, intron 4 of 5) MIR|SINE|MIR 276686 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 198.25-9 chr14 30052843 30053061 + 1 NA Intergenic Intergenic -125105 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 172.75-40 chr7 94497113 94497310 + 1 NA Intergenic LTR1F2|LTR|ERV1 -12598 NM_001363427 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 183.5-70 chr6 64544048 64544327 + 1 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 737351 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 235.25-25 chr6 83755824 83756080 + 1 NA Intergenic L1M1|LINE|L1 46510 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 195.5-76 chr6 48087699 48087991 + 1 NA Intergenic Intergenic -19156 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 119.5-60 chr2 114627560 114627758 + 1 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 166082 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 186.5-60 chr9 71400300 71400561 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 46541 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 140.5-42 chr2 70000143 70000317 + 1 NA intron (NR_033872, intron 7 of 10) FLAM_A|SINE|Alu -37965 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 281.5-13 chr4 72605838 72606435 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -36915 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 160.5-19 chr14 53369529 53369715 + 1 NA Intergenic Intergenic 216268 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 193.25-10 chr14 68687635 68687848 + 1 NA Intergenic Intergenic -58954 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 247.25-21 chr3 103864738 103865182 + 1 NA Intergenic L1ME4a|LINE|L1 -340844 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 125.25-27 chr15 74707874 74708051 + 1 NA Intergenic AluJo|SINE|Alu -11938 NM_001142443 80153 Hs.96852 NM_025083 ENSG00000179151 EDC3 LSM16|MRT50|YJDC|YJEFN2|hYjeF_N2-15q23 enhancer of mRNA decapping 3 protein-coding 137.25-82 chr8 137436083 137436439 + 1 NA Intergenic MIRc|SINE|MIR -22673 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 218.75-4 chr1 115600718 115600975 + 1 NA Intergenic AluJb|SINE|Alu -41124 NM_138959 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 164.25-5 chr1 100596744 100596993 + 1 NA Intergenic L2c|LINE|L2 50136 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 213.25-13 chr15 27169017 27169334 + 1 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -7856 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 180.75-36 chr2 157200735 157201012 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -56832 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 204.75-46 chr7 116647010 116647244 + 1 NA Intergenic Intergenic -25069 NM_001324402 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 291.5-14 chr7 404805 405185 + 1 NA Intergenic L1ME2|LINE|L1 25570 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 217.5-35 chr5 89638961 89639232 + 1 NA Intergenic L1MA4A|LINE|L1 377624 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 150.25 chr1 48880773 48880993 + 1 NA intron (NM_001323575, intron 5 of 12) L1ME4c|LINE|L1 -103914 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 164.25-48 chr5 74034017 74034275 + 1 NA Intergenic L1ME4a|LINE|L1 220600 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 209.25-58 chr9 103117151 103117413 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 121949 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 123.25-24 chr14 64431275 64431548 + 1 NA intron (NM_005956, intron 13 of 27) intron (NM_005956, intron 13 of 27) -34088 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 204.25-22 chr17 53609011 53609420 + 1 NA Intergenic L1MEd|LINE|L1 -213712 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 119.75-66 chr5 3562229 3562509 + 1 NA Intergenic L1MA4A|LINE|L1 -26275 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 234.25-5 chr11 127424752 127425254 + 1 NA Intergenic Intergenic 153933 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 284.5-20 chr7 121460004 121460352 + 1 NA Intergenic AluSz6|SINE|Alu -63810 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 140.25-97 chrX 44813669 44813842 + 1 NA Intergenic Intergenic -30266 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 144.5-66 chr21 30976830 30977131 + 1 NA Intergenic Intergenic 61496 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 120.25-19 chr12 1863074 1863310 + 1 NA intron (NM_172364, intron 18 of 37).2 L1ME2|LINE|L1 42627 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 287.5-12 chr15 87226957 87227468 + 1 NA Intergenic Intergenic -238786 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 192.5-41 chr3 65097880 65098110 + 1 NA Intergenic Intergenic -409995 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 277.25-3 chr1 56111486 56111942 + 1 NA Intergenic L1P4|LINE|L1 166627 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 150.5-5 chr1 205025851 205026120 + 1 NA Intergenic L2c|LINE|L2 -16964 NM_001346083 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 140.25-64 chr4 58267868 58268016 + 1 NA Intergenic Intergenic 268386 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 137.75-78 chr7 70727800 70728080 + 1 NA intron (NM_015570, intron 6 of 18) MER39|LTR|ERV1 -404204 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 225.5-16 chr12 62943783 62944056 + 1 NA Intergenic Intergenic -8769 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 228.25-12 chr14 63829231 63829582 + 1 NA Intergenic AluJr|SINE|Alu -23559 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 249.5-12 chr2 183644817 183645260 + 1 NA Intergenic Intergenic 520595 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 166.5-61 chr2 208826167 208826350 + 1 NA TTS (NR_136588) TTS (NR_136588) 283616 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 127.5-94 chr5 17146290 17146465 + 1 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) 9615 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 173.5-30 chr15 91915776 91916000 + 1 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 61584 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 241.25-4 chr12 4400348 4400760 + 1 NA Intergenic Intergenic -20842 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 227.5-16 chr14 33905359 33905711 + 1 NA Intergenic L1MC4a|LINE|L1 45539 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 198.5-39 chr5 12466307 12466635 + 1 NA Intergenic Intergenic -108386 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 227.5-34 chr3 41663307 41663765 + 1 NA intron (NR_136342, intron 28 of 34) intron (NR_136342, intron 28 of 34) 298567 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 176.5-68 chr4 66065035 66065386 + 1 NA Intergenic Arthur1B|DNA|hAT-Tip100 -211614 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 143.25-35 chr2 23836110 23836316 + 1 NA intron (NR_125717, intron 13 of 28) MER52A|LTR|ERV1 90910 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 286.5-3 chr10 10375648 10376015 + 1 NA Intergenic Intergenic 86518 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 120.25-63 chr6 140132324 140132557 + 1 NA Intergenic L1M2|LINE|L1 -72812 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 113.5-100 chr5 114399699 114399975 + 1 NA intron (NM_001278204, intron 2 of 6) L1PA15|LINE|L1 -33674 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 162.5-80 chr6 126992444 126992643 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -126128 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 133.5-94 chr5 128629564 128629737 + 1 NA Intergenic Intergenic -91405 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 115.5 chr1 48401652 48401828 + 1 NA intron (NM_019073, intron 6 of 12) MLT1H2|LTR|ERVL-MaLR 70464 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 155.75-33 chr22 28135809 28136102 + 1 NA intron (NM_001145418, intron 6 of 22) MER5C|DNA|hAT-Charlie -215343 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 178.5-89 chr8 117262624 117262834 + 1 NA Intergenic MIRb|SINE|MIR 127734 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 115.75-66 chr3 197312657 197312819 + 1 NA Intergenic L1MA9|LINE|L1 -13417 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 152.5-105 chr9 28925038 28925269 + 1 NA intron (NM_001354574, intron 2 of 5) L1MA7|LINE|L1 -36198 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 197.5-29 chr2 46756522 46756847 + 1 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 57389 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 209.5-20 chr20 10769443 10769676 + 1 NA Intergenic MER5A|DNA|hAT-Charlie 16469 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 122.75-20 chr13 46007577 46007887 + 1 NA intron (NM_001330566, intron 8 of 19) intron (NM_001330566, intron 8 of 19) 45014 NM_001330564 23091 Hs.136102 NM_015070 ENSG00000123200 ZC3H13 KIAA0853|Xio zinc finger CCCH-type containing 13 protein-coding 173.5-21 chr14 46995897 46996175 + 1 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -344255 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 153.5-21 chr11 111240820 111241121 + 1 NA Intergenic Intergenic -4755 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 193.5-12 chr11 58525617 58525866 + 1 NA Intergenic L3b|LINE|CR1 -17636 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 227.5-61 chr9 85015803 85016162 + 1 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 310081 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 128.25-9 chr1 231250994 231251155 + 1 NA exon (NM_014236, exon 2 of 16) exon (NM_014236, exon 2 of 16) 9862 NM_014236 8443 Hs.498028 NM_014236 ENSG00000116906 GNPAT DAP-AT|DAPAT|DHAPAT|RCDP2 glyceronephosphate O-acyltransferase protein-coding 230.5-37 chr4 30618999 30619441 + 1 NA Intergenic Intergenic -101149 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 134.25-101 chrX 151990690 151991011 + 1 NA Intergenic L1ME3A|LINE|L1 -16174 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 265.5-25 chr8 82809899 82810208 + 1 NA Intergenic L1ME3A|LINE|L1 -102051 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 156.25-37 chr2 127836607 127836783 + 1 NA Intergenic AluJo|SINE|Alu 21460 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 164.75-21 chr12 124028456 124028620 + 1 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 55323 NM_001347902 100533183 Hs.524828 NM_001204299 ENSG00000178882 ZNF664-RFLNA - ZNF664-RFLNA readthrough protein-coding 204.75-9 chr12 123823461 123823947 + 1 NA intron (NM_207437, intron 23 of 77) L1MA2|LINE|L1 61209 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 166.25-51 chr6 70734861 70735160 + 1 NA intron (NM_001044305, intron 2 of 10) intron (NM_001044305, intron 2 of 10) 66480 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 300.75-13 chr7 54235350 54235817 + 1 NA Intergenic L1PB3|LINE|L1 -95114 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 210.75-24 chr4 54128990 54129324 + 1 NA Intergenic L1MA2|LINE|L1 28994 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 118.25-67 chr4 5979111 5979250 + 1 NA intron (NM_001364689, intron 7 of 11) L1ME3G|LINE|L1 39366 NM_001364689 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 149.5-11 chr10 28883686 28883928 + 1 NA Intergenic Intergenic 37399 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 244.5-39 chr8 76867089 76867506 + 1 NA TTS (NM_024721) TTS (NM_024721) 99553 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 198.25-19 chr17 80467688 80468075 + 1 NA 3' UTR (NM_002522, exon 5 of 5) 3' UTR (NM_002522, exon 5 of 5) 8726 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 192.5-44 chr4 21297867 21298112 + 1 NA intron (NM_147182, intron 2 of 8) MIRb|SINE|MIR 5917 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 224.25-5 chr11 12075785 12076134 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR -34617 NM_001282668 9645 Hs.501928 NM_014632 ENSG00000133816 MICAL2 MICAL-2|MICAL2PV1|MICAL2PV2 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 148.75-65 chr7 27599221 27599560 + 1 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -16584 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 119.5-5 chr1 83783590 83783782 + 1 NA intron (NR_119375, intron 1 of 2) L1ME2|LINE|L1 76860 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 134.25-55 chr3 24600179 24600450 + 1 NA Intergenic Intergenic -104606 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 158.5-22 chr11 25652352 25652542 + 1 NA Intergenic L2b|LINE|L2 -536676 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 194.5-73 chr8 75603909 75604249 + 1 NA Intergenic L1MEc|LINE|L1 64111 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 145.25-45 chr2 197249261 197249496 + 1 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 51387 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 138.5-96 chr7 44632487 44632864 + 1 NA intron (NM_002541, intron 2 of 22) AluSc8|SINE|Alu 26048 NM_001363523 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 206.75-21 chr22 22998149 22998362 + 1 NA Intergenic L1M2|LINE|L1 -72264 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 134.75-10 chr10 81483684 81483968 + 1 NA Intergenic Intergenic -391368 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 216.5 chr1 180289857 180290155 + 1 NA intron (NM_032360, intron 7 of 7) L1ME3D|LINE|L1 -15325 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 213.5-16 chr14 46078269 46078509 + 1 NA intron (NR_102702, intron 1 of 3) L1MC4|LINE|L1 14230 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 250.75-14 chr4 30995513 30995801 + 1 NA intron (NM_001173523, intron 2 of 2) MLT1D|LTR|ERVL-MaLR -175487 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 121.5-14 chr10 62716772 62717041 + 1 NA Intergenic Intergenic -87814 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 287.5-14 chr2 13328036 13328411 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -321210 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 303.5-17 chr7 25708933 25709355 + 1 NA intron (NR_157808, intron 1 of 4) L1MC4a|LINE|L1 -38413 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 156.5-72 chr7 28553740 28553941 + 1 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 118225 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 113.5-112 chr7 129489191 129489314 + 1 NA TTS (NM_020704) TTS (NM_020704) -13279 NM_001195243 100287482 Hs.178144 NM_001195243 ENSG00000240204 SMKR1 - small lysine rich protein 1 protein-coding 129.75-57 chr3 88526316 88526542 + 1 NA Intergenic L1PA8A|LINE|L1 187973 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 148.25-73 chr8 115420218 115420498 + 1 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 247655 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 350.25-9 chr3 132992513 132992957 + 1 NA Intergenic Intergenic -45553 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 276.75-18 chr5 133056964 133057330 + 1 NA intron (NM_002154, intron 1 of 18) intron (NM_002154, intron 1 of 18) 5134 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 207.75-7 chr10 86904467 86904844 + 1 NA intron (NM_004329, intron 7 of 12) L1MEc|LINE|L1 -51104 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 267.5-10 chr17 57171241 57171745 + 1 NA Intergenic MIRc|SINE|MIR 76004 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 142.5-104 chr9 134988675 134988881 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -70866 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 148.25-17 chr12 34637591 34637752 + 1 NA Intergenic ALR/Alpha|Satellite|centr 615175 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 196.25-29 chr2 16303484 16303878 + 1 NA Intergenic L2c|LINE|L2 253254 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 149.5-8 chr1 96135584 96135763 + 1 NA Intergenic Intergenic 143605 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 158.75-66 chr6 86450317 86450612 + 1 NA Intergenic L1MA4|LINE|L1 -487064 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 130.25-66 chr4 59515359 59515667 + 1 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 501940 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 188.5 chr1 54695067 54695377 + 1 NA intron (NM_001039464, intron 16 of 23) MIR3|SINE|MIR -20600 NM_001291333 7268 Hs.412482 NM_004623 ENSG00000243725 TTC4 CNS1 tetratricopeptide repeat domain 4 protein-coding 116.5-6 chr1 170177289 170177481 + 1 NA intron (NR_146891, intron 1 of 4) L2a|LINE|L2 3006 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 250.5-26 chr5 18838624 18839122 + 1 NA Intergenic Intergenic 1031599 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 128.5-82 chr6 37228143 37228293 + 1 NA intron (NM_145316, intron 1 of 3) FLAM_A|SINE|Alu 29381 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 160.5-21 chr14 70228684 70228990 + 1 NA intron (NR_135825, intron 3 of 3) L1P3|LINE|L1 18964 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 137.5-24 chr12 98755650 98755832 + 1 NA intron (NM_001352221, intron 8 of 9) MIRb|SINE|MIR 110441 NM_181868 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 197.5-37 chr2 177972200 177972574 + 1 NA intron (NM_001077197, intron 3 of 20) L2a|LINE|L2 -49550 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 120.5-58 chr21 18379460 18379628 + 1 NA intron (NM_002772, intron 4 of 24) intron (NM_002772, intron 4 of 24) 24241 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 122.5-87 chr6 126903539 126903742 + 1 NA Intergenic Intergenic -215031 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 206.5-5 chr10 59276366 59276763 + 1 NA intron (NM_001347852, intron 6 of 12) MIR|SINE|MIR 85985 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 210.5-53 chr6 111180431 111180755 + 1 NA intron (NM_018593, intron 3 of 5) intron (NM_018593, intron 3 of 5) 66759 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 131.75-85 chr9 29269652 29269950 + 1 NA Intergenic L1ME3B|LINE|L1 -56200 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 206.5-17 chr14 47545748 47546002 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 129079 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 133.5-124 chr9 91350685 91350914 + 1 NA intron (NM_001698, intron 3 of 9) intron (NM_001698, intron 3 of 9) 11125 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 188.25-52 chr6 160403825 160404131 + 1 NA intron (NM_021977, intron 2 of 10) L1MC1|LINE|L1 55600 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 178.5-80 chr7 115180408 115180699 + 1 NA intron (NR_126407, intron 1 of 4) L2a|LINE|L2 50802 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 246.25-15 chr2 72108408 72108723 + 1 NA Intergenic L1ME1|LINE|L1 39297 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 154.75-38 chr20 50281204 50281509 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -11364 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 137.75-47 chr2 167224399 167224552 + 1 NA intron (NM_001199144, intron 3 of 8) AluJb|SINE|Alu 37103 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 133.25-68 chr5 147616398 147616620 + 1 NA intron (NM_001282282, intron 18 of 20) intron (NM_001282282, intron 18 of 20) 56515 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 177.5-46 chr3 7034716 7034968 + 1 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -140825 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 115.5-63 chr4 20769266 20769484 + 1 NA intron (NM_025221, intron 2 of 7) intron (NM_025221, intron 2 of 7) 68917 NR_047661 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 135.75-102 chr8 113488154 113488421 + 1 NA Intergenic L1M1|LINE|L1 -51348 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 156.5-93 chr9 375363 375656 + 1 NA intron (NM_001193536, intron 17 of 46) intron (NM_001193536, intron 17 of 46) -94782 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 188.5-61 chrX 86747103 86747378 + 1 NA intron (NM_001139515, intron 7 of 11) L1PA15|LINE|L1 484272 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 151.25-17 chr14 56145480 56145929 + 1 NA intron (NM_021255, intron 1 of 5) L2b|LINE|L2 27293 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 163.25-40 chr20 62679832 62680144 + 1 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -13367 NR_024470 100127888 Hs.671273 NR_024470 ENSG00000232803 SLCO4A1-AS1 - SLCO4A1 antisense RNA 1 ncRNA 181.5-10 chr11 81952659 81952884 + 1 NA intron (NR_120571, intron 6 of 7) Harlequin-int|LTR|ERV1 -61935 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 154.5-78 chr9 119251101 119251365 + 1 NA intron (NM_014618, intron 2 of 7) intron (NM_014618, intron 2 of 7) 118202 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 133.75-82 chr9 130292881 130293171 + 1 NA intron (NM_001291815, intron 4 of 97) L1MC5a|LINE|L1 27266 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 181.25-46 chr5 25301744 25301984 + 1 NA intron (NR_136209, intron 3 of 3) intron (NR_136209, intron 3 of 3) 110911 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 174.5-76 chr8 31362405 31362777 + 1 NA Intergenic MIRc|SINE|MIR -277161 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 149.75-33 chr20 54194432 54194766 + 1 NA Intergenic MamRep137|DNA|TcMar-Tigger -13488 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 124.75-42 chr19 56289883 56290120 + 1 NA intron (NM_001354658, intron 6 of 10) intron (NM_001354658, intron 6 of 10) 17253 NM_001354658 100506374 Hs.631532 NM_001354658 ENSG00000267710 EDDM13 - epididymal protein 13 protein-coding 112.75-32 chr14 70336681 70336907 + 1 NA intron (NM_001202549, intron 3 of 4) MamRep137|DNA|TcMar-Tigger 22889 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 156.75-11 chr10 67447209 67447533 + 1 NA intron (NM_001127384, intron 5 of 17) MER67C|LTR|ERV1 -43961 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 140.75-63 chr7 80194983 80195287 + 1 NA intron (NM_002069, intron 3 of 7) intron (NM_002069, intron 3 of 7) 59351 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 193.75-15 chr14 65744559 65744947 + 1 NA TTS (NM_178155) TTS (NM_178155) 273651 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 174.25-34 chr2 116751913 116752306 + 1 NA Intergenic Intergenic -1062582 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 213.25-25 chr20 55918038 55918325 + 1 NA Intergenic Intergenic 87338 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 156.5-63 chr5 113711445 113711641 + 1 NA Intergenic L1MA8|LINE|L1 197849 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 129.25-6 chr10 938893 939095 + 1 NA intron (NR_120629, intron 1 of 2) L1MC5|LINE|L1 5968 NR_120629 101927762 Hs.151159 NR_120629 ENSG00000229869 LOC101927762 - uncharacterized LOC101927762 ncRNA 162.75-51 chr4 45243086 45243478 + 1 NA Intergenic Intergenic -516648 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 280.5-6 chr12 106418397 106418703 + 1 NA intron (NM_001160708, intron 12 of 27) intron (NM_001160708, intron 12 of 27) 60468 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 155.25-17 chr14 23568761 23568955 + 1 NA TTS (NR_110555) TTS (NR_110555) -1067 NM_001354681 8906 Hs.343244 NM_003917 ENSG00000213983 AP1G2 G2AD adaptor related protein complex 1 subunit gamma 2 protein-coding 208.25-41 chr8 13528977 13529419 + 1 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -14347 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 253.25-9 chr14 20194584 20194865 + 1 NA Intergenic Intergenic -2612 NM_001005503 390439 Hs.554582 NM_001005503 ENSG00000196832 OR11G2 OR14-34 olfactory receptor family 11 subfamily G member 2 protein-coding 123.75-105 chr8 133229027 133229215 + 1 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 38082 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 113.25-50 chr16 58460036 58460167 + 1 NA Intergenic AluSz6|SINE|Alu -3544 NM_020465 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 113.75-4 chr1 52581563 52581697 + 1 NA Intergenic MIR3|SINE|MIR -20741 NM_015696 2882 Hs.43728 NM_015696 ENSG00000116157 GPX7 CL683|GPX6|GPx-7|GSHPx-7|NPGPx glutathione peroxidase 7 protein-coding 239.25-3 chr10 29900410 29900796 + 1 NA Intergenic Intergenic 158983 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 254.5-12 chr18 12887121 12887414 + 1 NA Intergenic L1ME3A|LINE|L1 -2932 NM_080422 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 155.5-20 chr11 76910612 76910880 + 1 NA intron (NM_001300953, intron 1 of 9) L1M5|LINE|L1 49828 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 254.25-29 chrX 73215050 73215411 + 1 NA promoter-TSS (NM_021963) promoter-TSS (NM_021963) -379 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 233.5-29 chr22 27050614 27050985 + 1 NA intron (NM_001318329, intron 1 of 1) L2c|LINE|L2 9719 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 172.5-81 chr7 84466584 84466913 + 1 NA Intergenic Intergenic -65728 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 123.75-58 chr20 10767054 10767254 + 1 NA Intergenic Intergenic 14064 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 164.5-82 chr6 92327085 92327336 + 1 NA Intergenic Intergenic -636782 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 180.5-41 chr2 78332757 78333090 + 1 NA Intergenic L1MEi|LINE|L1 -42192 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 122.25-92 chr8 106434420 106434599 + 1 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -13415 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 120.75-66 chr3 102018032 102018197 + 1 NA Intergenic LTR80A|LTR|ERVL 77255 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 203.25-34 chr3 170278364 170278663 + 1 NA intron (NM_002740, intron 8 of 17) AluJr|SINE|Alu 56089 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 135.25-76 chr5 59509168 59509422 + 1 NA intron (NM_001349242, intron 1 of 16) L1MEd|LINE|L1 77203 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 158.75-72 chr8 123070255 123070495 + 1 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -2332 NM_001363155 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 205.75-22 chr2 36399907 36400239 + 1 NA intron (NM_016441, intron 2 of 16) L2|LINE|L2 44295 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 199.75-3 chr11 91271697 91272005 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -402649 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 152.5-102 chr8 121854200 121854432 + 1 NA Intergenic L1PA16|LINE|L1 -212876 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 194.5-80 chr8 137085474 137085696 + 1 NA Intergenic Intergenic 328003 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 118.75-21 chr12 39056557 39056752 + 1 NA Intergenic Intergenic -151063 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 128.5-93 chr7 34254459 34254601 + 1 NA Intergenic Intergenic 348991 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 147.75-62 chr5 33587022 33587336 + 1 NA intron (NM_001324512, intron 16 of 21) intron (NM_001324512, intron 16 of 21) 146403 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 112.75-54 chr2 221458236 221458401 + 1 NA intron (NM_001363748, intron 5 of 17) intron (NM_001363748, intron 5 of 17) 113986 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 149.5-84 chr5 95393945 95394117 + 1 NA intron (NM_152548, intron 2 of 9) intron (NM_152548, intron 2 of 9) 2665 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 210.25-21 chr2 22029758 22030133 + 1 NA Intergenic Intergenic -319293 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 207.5-8 chr11 74739623 74740109 + 1 NA Intergenic MIR3|SINE|MIR -8440 NM_001278473 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 183.5-45 chr22 27251689 27251969 + 1 NA Intergenic L1ME4b|LINE|L1 -27150 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 168.75-43 chr5 13952715 13953122 + 1 NA Intergenic FRAM|SINE|Alu -8438 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 196.5-6 chr1 64553607 64553840 + 1 NA intron (NM_020925, intron 2 of 26) L1ME3D|LINE|L1 -26124 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 240.5-44 chr8 14328806 14329108 + 1 NA intron (NM_001322881, intron 2 of 6) MLT1A1|LTR|ERVL-MaLR 524553 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 127.5-7 chr1 158297465 158297604 + 1 NA Intergenic L1PA13|LINE|L1 7611 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 294.75 chr1 8646471 8646887 + 1 NA intron (NM_001042681, intron 2 of 22) MLT1C|LTR|ERVL-MaLR -151766 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 193.5-72 chr7 45187913 45188202 + 1 NA Intergenic Intergenic 30266 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 238.75-5 chr13 58290650 58290930 + 1 NA Intergenic Intergenic -57673 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 179.5-75 chr5 26582895 26583145 + 1 NA Intergenic Intergenic 455566 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 142.75-63 chr4 152786137 152786500 + 1 NA intron (NM_001025595, intron 1 of 8) L2b|LINE|L2 6364 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 120.5-44 chr2 12979748 12979921 + 1 NA intron (NR_038434, intron 5 of 5) intron (NR_038434, intron 5 of 5) 27179 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 237.5-11 chr13 89908379 89908783 + 1 NA Intergenic LOR1-int|LTR|ERV1 211136 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 211.25-29 chr4 16345460 16345671 + 1 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 118902 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 180.25-25 chr18 67053918 67054108 + 1 NA Intergenic Intergenic -27571 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 197.5-32 chr2 110654908 110655141 + 1 NA intron (NM_001278616, intron 15 of 23) MER8|DNA|TcMar-Tigger 3225 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 121.5-112 chr9 73553249 73553434 + 1 NA Intergenic Intergenic 401476 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 261.75-32 chr9 27284888 27285259 + 1 NA intron (NM_001161585, intron 6 of 6) intron (NM_001161585, intron 6 of 6) -2280 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 218.25-27 chr2 75488764 75489081 + 1 NA Intergenic L2c|LINE|L2 -35146 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 209.5-6 chr12 121907559 121907852 + 1 NA intron (NR_048555, intron 3 of 4) L1MB7|LINE|L1 -10887 NM_001178003 144406 Hs.709837 NM_144668 ENSG00000158023 WDR66 CFAP251|CaM-IP4|SPGF33 WD repeat domain 66 protein-coding 127.5-48 chr17 75945075 75945274 + 1 NA 3' UTR (NM_007292, exon 14 of 14) 3' UTR (NM_007292, exon 14 of 14) -6942 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 195.25-21 chr19 36060919 36061315 + 1 NA intron (NM_001083961, intron 3 of 31) intron (NM_001083961, intron 3 of 31) 6220 NM_173636 284403 Hs.116244 NM_173636 ENSG00000075702 WDR62 C19orf14|MCPH2 WD repeat domain 62 protein-coding 193.5-42 chr3 88160031 88160316 + 1 NA Intergenic Intergenic 10214 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 121.5-32 chr14 47484579 47484844 + 1 NA intron (NM_001113498, intron 1 of 16) THE1B|LTR|ERVL-MaLR -141465 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 150.5-18 chr12 60375920 60376158 + 1 NA Intergenic L1PA10|LINE|L1 686669 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 126.5-125 chrX 62761962 62762141 + 1 NA Intergenic ALR/Alpha|Satellite|centr 589281 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 157.25-28 chr16 87415189 87415406 + 1 NA exon (NM_015144, exon 9 of 13) exon (NM_015144, exon 9 of 13) 22961 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 188.5-48 chr6 24552989 24553276 + 1 NA intron (NM_001350407, intron 18 of 19) intron (NM_001350407, intron 18 of 19) 30095 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 137.75-26 chr14 72367383 72367704 + 1 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -149277 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 255.75-9 chr15 101320631 101320978 + 1 NA intron (NM_002570, intron 18 of 21) intron (NM_002570, intron 18 of 21) -11500 NR_045387 100507472 Hs.498494 NR_045387 LOC100507472 - uncharacterized LOC100507472 ncRNA 240.5-46 chr9 26821075 26821418 + 1 NA Intergenic Intergenic 71556 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 193.75-48 chr9 40928559 40928803 + 1 NA TTS (NR_031629) TTS (NR_031629) 411 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 125.25-37 chr2 33414773 33414921 + 1 NA Intergenic Intergenic -3669 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 236.5-33 chr3 96567108 96567441 + 1 NA Intergenic Intergenic 207310 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 224.25-26 chr3 43077856 43078127 + 1 NA Intergenic L1ME3|LINE|L1 28088 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 214.5-32 chr3 12604506 12604898 + 1 NA intron (NM_001354695, intron 4 of 14) intron (NM_001354695, intron 4 of 14) 47615 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 134.75-18 chr15 27043604 27043805 + 1 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 72523 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 254.5-22 chr4 114437993 114438476 + 1 NA Intergenic L1MEb|LINE|L1 -160168 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 124.5-32 chr14 55405472 55405680 + 1 NA intron (NM_014924, intron 1 of 9) intron (NM_014924, intron 1 of 9) 6282 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 166.5-5 chr1 43394335 43394658 + 1 NA intron (NM_015284, intron 1 of 70) MER5A|DNA|hAT-Charlie 4597 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B SZT2 subunit of KICSTOR complex protein-coding 122.5-53 chr20 9737482 9737693 + 1 NA intron (NM_177990, intron 1 of 9) L1ME1|LINE|L1 101489 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 146.75-51 chr6 12348709 12349001 + 1 NA Intergenic L2b|LINE|L2 58494 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 147.75-83 chr8 91998151 91998334 + 1 NA intron (NM_004349, intron 5 of 10) intron (NM_004349, intron 5 of 10) 19438 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 152.25-41 chr3 156471754 156472023 + 1 NA intron (NM_001308222, intron 7 of 12) intron (NM_001308222, intron 7 of 12) -24952 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 212.5-37 chr4 32942563 32942885 + 1 NA Intergenic AluSz|SINE|Alu 591686 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 184.75-23 chr14 41845211 41845653 + 1 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 238576 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 149.25-53 chr5 82752717 82752963 + 1 NA Intergenic L1MB2|LINE|L1 -87315 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 287.5-18 chr2 157852188 157852617 + 1 NA intron (NM_001347664, intron 1 of 11) AluJb|SINE|Alu -13772 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 123.5-108 chr8 88218546 88218711 + 1 NA intron (NM_005941, intron 1 of 9) L1MA9|LINE|L1 108855 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 173.5-29 chr15 61013359 61013557 + 1 NA intron (NM_134261, intron 1 of 10) MIRc|SINE|MIR 215844 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 141.5-51 chr19 47247027 47247244 + 1 NA Intergenic Intergenic -9390 NM_015603 26093 Hs.227782 NM_015603 ENSG00000105321 CCDC9 - coiled-coil domain containing 9 protein-coding 122.5-85 chr6 117967921 117968186 + 1 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 60789 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 236.5-38 chr4 70102264 70102690 + 1 NA Intergenic L1M3|LINE|L1 -31127 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 119.5-58 chr2 88152025 88152185 + 1 NA Intergenic L1MA5|LINE|L1 -18190 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 139.5-91 chr6 48147851 48148033 + 1 NA Intergenic MIR1_Amn|SINE|MIR -79253 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 173.25-14 chr13 102323475 102323717 + 1 NA intron (NM_001321941, intron 1 of 5) intron (NM_001321941, intron 1 of 5) -5892 NM_001321935 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 161.25-28 chr16 87334866 87335097 + 1 NA intron (NM_024735, intron 7 of 8) intron (NM_024735, intron 7 of 8) 17472 NR_135180 101928659 Hs.667450 NR_135180 ENSG00000270006 LOC101928659 - uncharacterized LOC101928659 ncRNA 209.75-17 chr18 77011847 77012134 + 1 NA TTS (NM_001025100) TTS (NM_001025100) 5065 NM_001025092 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 144.75-82 chr7 85150216 85150511 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -28432 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 235.25-5 chr11 108004949 108005389 + 1 NA Intergenic Intergenic -3729 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 259.5-20 chr3 54642953 54643408 + 1 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -3323 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 139.25-3 chr1 92692315 92692468 + 1 NA intron (NM_001350198, intron 9 of 19) intron (NM_001350198, intron 9 of 19) 92717 NM_001350198 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 258.25-8 chr16 20324859 20325460 + 1 NA intron (NM_001007240, intron 2 of 11) MIRb|SINE|MIR 2354 NM_001007240 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 180.5-9 chr10 96696416 96696786 + 1 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 23913 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 139.5-57 chr3 36902920 36903265 + 1 NA intron (NM_001329998, intron 3 of 23) intron (NM_001329998, intron 3 of 23) 41962 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 152.25-12 chr11 35152500 35152670 + 1 NA intron (NM_001001389, intron 1 of 16) intron (NM_001001389, intron 1 of 16) -10365 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 177.5-20 chr15 74242062 74242422 + 1 NA intron (NM_025055, intron 1 of 18) MIR3|SINE|MIR 5916 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 278.25-13 chr2 201381361 201381938 + 1 NA intron (NM_015049, intron 15 of 15) intron (NM_015049, intron 15 of 15) -24251 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 196.75-20 chr20 22615287 22615622 + 1 NA Intergenic HAL1b|LINE|L1 -7937 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 179.5-52 chr18 65664488 65664719 + 1 NA Intergenic Intergenic -85649 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 188.75-22 chr2 208286826 208287077 + 1 NA intron (NM_001178000, intron 6 of 11) intron (NM_001178000, intron 6 of 11) 20684 NM_001178000 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 143.5-2 chr1 70194277 70194449 + 1 NA intron (NM_017768, intron 1 of 14) L1ME1|LINE|L1 11216 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 194.5-44 chr22 36677733 36678032 + 1 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 24976 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 123.75-35 chr13 52891566 52891889 + 1 NA Intergenic Intergenic -43087 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 288.25-6 chr2 59037534 59037925 + 1 NA intron (NR_033873, intron 12 of 13) L1MA4|LINE|L1 -179979 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 132.75-30 chr12 74139761 74140036 + 1 NA intron (NR_038300, intron 6 of 6) L1M4|LINE|L1 152733 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 208.5-2 chr1 86845593 86845915 + 1 NA Intergenic AluSq2|SINE|Alu 68372 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 191.25-2 chr1 173415225 173415451 + 1 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) 46024 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 260.75-23 chr9 32777877 32778232 + 1 NA Intergenic L1M5|LINE|L1 -5486 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 359.25-4 chr19 5140606 5141232 + 1 NA intron (NM_015015, intron 18 of 22) intron (NM_015015, intron 18 of 22) 171806 NM_001370093 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 191.75-39 chr6 155206443 155206689 + 1 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -10400 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 214.25-13 chr13 104417616 104417839 + 1 NA Intergenic Intergenic 992527 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 198.5-45 chr6 7940877 7941297 + 1 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -30299 NM_030810 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 225.5-12 chr10 94434735 94435054 + 1 NA intron (NM_015188, intron 1 of 12) MSTD|LTR|ERVL-MaLR 32353 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 231.75-20 chr3 100605183 100605575 + 1 NA Intergenic Intergenic -4222 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 235.5-51 chr7 42193542 42193953 + 1 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 43462 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 248.5-8 chr14 51602447 51602806 + 1 NA intron (NM_001042481, intron 2 of 14) MER58B|DNA|hAT-Charlie -2674 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 141.25-54 chr4 31334439 31334659 + 1 NA Intergenic Intergenic 163405 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 134.75-37 chr2 137211097 137211274 + 1 NA intron (NM_001316349, intron 7 of 27) intron (NM_001316349, intron 7 of 27) 445640 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 125.25-55 chr3 176508454 176508714 + 1 NA Intergenic HUERS-P3-int|LTR|ERV1 -6519 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 186.75-55 chr6 44392485 44392865 + 1 NA exon (NM_001253, exon 3 of 16) exon (NM_001253, exon 3 of 16) 4969 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 179.25-26 chr20 53855240 53855469 + 1 NA Intergenic Intergenic 20355 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 171.5-15 chr11 134715439 134715663 + 1 NA Intergenic Intergenic -20394 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 147.5-81 chr8 113164596 113164838 + 1 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 212435 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 178.5-48 chr3 46438167 46438406 + 1 NA intron (NM_001321122, intron 18 of 19) intron (NM_001321122, intron 18 of 19) -14619 NR_151704 105377068 NR_151704 ENSG00000283646 LINC02009 - long intergenic non-protein coding RNA 2009 ncRNA 220.5-51 chr8 141331707 141332099 + 1 NA Intergenic Intergenic -8646 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 278.5-17 chr19 30172215 30172628 + 1 NA Intergenic Intergenic -199963 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 197.75-17 chr19 47451182 47451595 + 1 NA intron (NM_015063, intron 3 of 9) AluJb|SINE|Alu 20505 NM_015063 6543 Hs.172884 NM_015063 ENSG00000118160 SLC8A2 NCX2 solute carrier family 8 member A2 protein-coding 353.25-4 chr6 158384829 158385538 + 1 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 62201 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 132.5-78 chr4 18990050 18990294 + 1 NA Intergenic Intergenic -968297 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 209.5-42 chr6 6873335 6873688 + 1 NA Intergenic Intergenic -234232 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 138.5-77 chr4 31577611 31577792 + 1 NA Intergenic Intergenic 71157 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 148.25-59 chr5 63514583 63514968 + 1 NA Intergenic LTR33|LTR|ERVL 447517 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 219.25-21 chr3 67555266 67555527 + 1 NA intron (NM_001177599, intron 2 of 10) L1MC4|LINE|L1 99218 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 148.5-29 chr14 80425195 80425358 + 1 NA intron (NR_038355, intron 8 of 8) MER58B|DNA|hAT-Charlie -194219 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 121.75-91 chr8 120128365 120128647 + 1 NA intron (NM_021110, intron 1 of 47) AluSx1|SINE|Alu 3404 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 176.5-40 chr19 10114151 10114539 + 1 NA TTS (NM_003755) TTS (NM_003755) 2652 NM_002566 5032 Hs.14468 NM_002566 ENSG00000244165 P2RY11 P2Y11 purinergic receptor P2Y11 protein-coding 254.5-5 chr1 239072033 239072371 + 1 NA Intergenic L1MA2|LINE|L1 -314366 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 173.75-32 chr3 150985753 150985942 + 1 NA intron (NR_024066, intron 1 of 5) L1M4c|LINE|L1 -12848 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 188.25-2 chr1 173839715 173839938 + 1 NA intron (NM_001365212, intron 10 of 15) intron (NM_001365212, intron 10 of 15) 15153 NM_001365213 55157 Hs.647707 NM_018122 ENSG00000117593 DARS2 ASPRS|LBSL|MT-ASPRS|mtAspRS aspartyl-tRNA synthetase 2, mitochondrial protein-coding 205.5-38 chr3 112046580 112046932 + 1 NA intron (NM_001042575, intron 4 of 15) L1MC5|LINE|L1 3778 NM_001366279 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 135.5-83 chr5 22925100 22925366 + 1 NA Intergenic Intergenic -71889 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 182.25-45 chr5 113770756 113771015 + 1 NA Intergenic Intergenic 257191 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 135.25-5 chr1 209617082 209617277 + 1 NA intron (NM_001017402, intron 20 of 21) MIR3|SINE|MIR 6331 NR_036213 100422894 NR_036213 ENSG00000283876 MIR4260 - microRNA 4260 ncRNA 184.75-48 chr5 86438286 86438649 + 1 NA Intergenic Intergenic 156023 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 174.5-88 chrX 12064074 12064344 + 1 NA intron (NM_001368398, intron 3 of 18) MIR|SINE|MIR -1332 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 205.5-23 chr17 81631856 81632268 + 1 NA intron (NM_001369698, intron 1 of 16) AluSx|SINE|Alu 5050 NM_001369698 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 155.75-37 chr3 96454691 96454846 + 1 NA Intergenic L1ME3B|LINE|L1 94804 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 178.5-25 chr18 34539497 34539733 + 1 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) 46303 NM_001198945 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 163.5-10 chr1 233381161 233381411 + 1 NA intron (NM_032435, intron 9 of 9) MIR|SINE|MIR 53562 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 165.75-20 chr14 76149319 76149543 + 1 NA Intergenic L2|LINE|L2 -2454 NM_001322029 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 171.25-58 chr8 97865683 97866040 + 1 NA Intergenic Intergenic -3203 NM_002380 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 255.25-12 chr2 42167106 42167403 + 1 NA intron (NR_110584, intron 1 of 3) intron (NR_110584, intron 1 of 3) -2099 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 162.25-7 chr13 53257975 53258412 + 1 NA Intergenic 7SLRNA|srpRNA|srpRNA -106293 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 175.75-17 chr2 15422868 15423323 + 1 NA intron (NR_052013, intron 23 of 50) MIRc|SINE|MIR 138239 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 137.5-79 chr3 179742410 179742686 + 1 NA intron (NM_003940, intron 12 of 20) intron (NM_003940, intron 12 of 20) 89508 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 188.75-37 chr5 17694482 17694864 + 1 NA Intergenic LTR33A_|LTR|ERVL -39035 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 133.5-108 chr8 11272236 11272486 + 1 NA Intergenic Intergenic -12455 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 131.5-45 chr2 168532399 168532639 + 1 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) -50424 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 209.5-32 chr4 14490498 14490754 + 1 NA intron (NR_126435, intron 5 of 6) L1PB1|LINE|L1 378658 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 162.5-47 chr2 229726259 229726450 + 1 NA Intergenic Intergenic -11799 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 124.5-93 chr6 105226510 105226722 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -46602 NM_022361 64208 Hs.458336 NM_022361 ENSG00000132429 POPDC3 POP3|bA355M14.1 popeye domain containing 3 protein-coding 167.75-38 chr2 220140740 220141052 + 1 NA Intergenic L1MA7|LINE|L1 -234331 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 138.25-16 chr11 38613653 38613887 + 1 NA Intergenic Intergenic 32586 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 156.75-34 chr15 61125064 61125293 + 1 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 104124 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 204.75-52 chrX 147651467 147651733 + 1 NA Intergenic L1ME4b|LINE|L1 260217 NR_024501 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 190.25-15 chr11 102084832 102085049 + 1 NA TTS (NM_001363505) TTS (NM_001363505) -25507 NM_001282098 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 185.5-27 chr14 72861695 72861880 + 1 NA intron (NM_001280542, intron 1 of 10) L1MEd|LINE|L1 30862 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 122.75-84 chr9 30841096 30841260 + 1 NA Intergenic L1M4b|LINE|L1 -432724 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 197.5-19 chr14 67254215 67254525 + 1 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 12935 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 117.5-3 chr1 113322306 113322473 + 1 NA Intergenic L3|LINE|CR1 -68126 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 164.5-14 chr11 68621876 68622171 + 1 NA Intergenic L1MB3|LINE|L1 -62521 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 125.75-30 chr17 71840563 71840870 + 1 NA Intergenic Intergenic 185263 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 123.75-46 chr17 65138610 65138870 + 1 NA intron (NM_003835, intron 1 of 18) intron (NM_003835, intron 1 of 18) 1370 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 156.25-48 chr3 4521991 4522279 + 1 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 28787 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 114.25-105 chr8 83741540 83741756 + 1 NA Intergenic Intergenic 337890 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 145.75-32 chr2 14650254 14650451 + 1 NA non-coding (NR_144632, exon 5 of 5) non-coding (NR_144632, exon 5 of 5) 17635 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 114.5-44 chr2 6175077 6175252 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 193186 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 134.75-61 chr5 132409939 132410073 + 1 NA promoter-TSS (NR_161242) promoter-TSS (NR_161242) -923 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 132.5-105 chr7 51644982 51645213 + 1 NA Intergenic Intergenic -251841 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 155.5-19 chr11 74344480 74344762 + 1 NA intron (NM_173582, intron 9 of 13) intron (NM_173582, intron 9 of 13) -32981 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 126.25-43 chr2 63986935 63987240 + 1 NA intron (NM_001005739, intron 1 of 22) L1MA3|LINE|L1 32341 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 136.75-98 chr7 120774391 120774527 + 1 NA Intergenic L1ME1|LINE|L1 83685 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 169.25-50 chr6 45949254 45949519 + 1 NA intron (NM_001114086, intron 2 of 5) intron (NM_001114086, intron 2 of 5) -11789 NR_045674 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 167.5-32 chr17 62763378 62763600 + 1 NA intron (NM_001288780, intron 4 of 10) intron (NM_001288780, intron 4 of 10) 43151 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 169.5-35 chr19 28897703 28898018 + 1 NA Intergenic Intergenic -67271 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 138.75-73 chr8 59584469 59584681 + 1 NA Intergenic Intergenic 465365 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 154.5-67 chr6 162857816 162858036 + 1 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 129956 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 165.5-88 chr8 9709718 9710127 + 1 NA intron (NM_003747, intron 9 of 26) intron (NM_003747, intron 9 of 26) -31750 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 153.5-44 chr2 56822664 56822937 + 1 NA Intergenic Intergenic -637030 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 117.5-60 chr21 42577267 42577472 + 1 NA intron (NM_001320537, intron 18 of 19) MER58C|DNA|hAT-Charlie 37726 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 212.5-46 chr5 66889765 66890182 + 1 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 61200 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 169.25-55 chr8 142143138 142143426 + 1 NA Intergenic Intergenic -33057 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 121.5-62 chr2 80410593 80410733 + 1 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 97284 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 149.75-30 chr2 128699094 128699266 + 1 NA Intergenic L1M3|LINE|L1 -165420 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 167.5-48 chr21 29566237 29566507 + 1 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -29668 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 258.75-28 chr8 117106236 117106540 + 1 NA intron (NM_001172815, intron 2 of 10) MADE1|DNA|TcMar-Mariner -28607 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 135.25-15 chr10 78487795 78488101 + 1 NA Intergenic L1ME4b|LINE|L1 220606 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 298.75 chr10 50409740 50410167 + 1 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -161343 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 170.5-86 chr8 134927152 134927435 + 1 NA Intergenic Intergenic 77358 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 161.25-14 chr12 1982507 1982724 + 1 NA intron (NM_152640, intron 3 of 8) L1MB3|LINE|L1 21842 NM_001319292 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 179.5-15 chr10 34212310 34212569 + 1 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -439759 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 141.75-46 chr2 162179245 162179475 + 1 NA intron (NM_004460, intron 21 of 25) intron (NM_004460, intron 21 of 25) -27113 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 131.5-64 chr4 24552660 24552822 + 1 NA intron (NM_001358, intron 5 of 13) intron (NM_001358, intron 5 of 13) 31813 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 163.5-27 chr12 116039940 116040198 + 1 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 108585 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 114.25-52 chr2 12461599 12461893 + 1 NA intron (NR_110196, intron 4 of 5) L1M4|LINE|L1 -255126 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 136.75-103 chr8 118741973 118742130 + 1 NA Intergenic L2a|LINE|L2 -120088 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 158.75-45 chr3 131187651 131187873 + 1 NA intron (NM_001353043, intron 14 of 17) intron (NM_001353043, intron 14 of 17) 160034 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 145.25-86 chr8 137688249 137688532 + 1 NA Intergenic L1MA6|LINE|L1 -274802 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 151.25-8 chr10 74722491 74722846 + 1 NA Intergenic L1ME1|LINE|L1 -102587 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 156.5-13 chr12 42158945 42159165 + 1 NA non-coding (NR_135139, exon 7 of 7) non-coding (NR_135139, exon 7 of 7) -14181 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 175.75-48 chr8 109369624 109369847 + 1 NA intron (NM_177531, intron 2 of 77) intron (NM_177531, intron 2 of 77) 7274 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 162.5-41 chr2 126968481 126968822 + 1 NA Intergenic Intergenic 69761 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 177.25-5 chr10 19152509 19152707 + 1 NA intron (NM_001142308, intron 11 of 39) intron (NM_001142308, intron 11 of 39) 103807 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 149.5-79 chr5 5406169 5406384 + 1 NA Intergenic Intergenic -16401 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 142.5-31 chr15 85082838 85083076 + 1 NA intron (NM_001243137, intron 5 of 21) intron (NM_001243137, intron 5 of 21) 100983 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 125.5-135 chrX 153221691 153221880 + 1 NA Intergenic Intergenic 42501 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 178.25-26 chr2 60009120 60009470 + 1 NA Intergenic Intergenic 373741 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 199.25-27 chr3 68500814 68501081 + 1 NA intron (NR_135532, intron 1 of 1) AluSx3|SINE|Alu 310 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 170.25-74 chrX 95258497 95258772 + 1 NA Intergenic L1PB3|LINE|L1 -195408 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 170.5-16 chr11 8147890 8148118 + 1 NA intron (NM_001206671, intron 1 of 5) AluSc5|SINE|Alu 21021 NR_144485 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 114.5-103 chr8 3280234 3280386 + 1 NA intron (NM_033225, intron 26 of 69) intron (NM_033225, intron 26 of 69) -551859 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 114.75-64 chr3 115419069 115419242 + 1 NA Intergenic Intergenic -204355 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 138.5-48 chr17 66480896 66481166 + 1 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -64177 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 273.5-18 chr5 105305812 105306335 + 1 NA Intergenic Intergenic 206599 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 185.5-72 chr8 72039465 72039680 + 1 NA intron (NM_007332, intron 18 of 26) L1PA3|LINE|L1 36012 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 208.5-69 chr7 77795006 77795410 + 1 NA intron (NM_032936, intron 1 of 1) intron (NM_032936, intron 1 of 1) 3226 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 181.25-35 chr20 38906477 38906689 + 1 NA intron (NM_015568, intron 7 of 10) intron (NM_015568, intron 7 of 10) -19834 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 135.75-86 chr6 55262022 55262324 + 1 NA intron (NM_001526, intron 4 of 7) L1PB1|LINE|L1 -65296 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 173.25-18 chr15 57461678 57462130 + 1 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) 85399 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 198.75-35 chr4 119086252 119086491 + 1 NA Intergenic L2b|LINE|L2 -49413 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 182.75-61 chr9 23673531 23673844 + 1 NA Intergenic MLT1M|LTR|ERVL-MaLR -1288 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 115.5-25 chr12 88909333 88909497 + 1 NA Intergenic L1MA4A|LINE|L1 110277 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 130.75-64 chr6 41005239 41005650 + 1 NA intron (NR_110873, intron 1 of 5) L1MC5a|LINE|L1 17836 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 116.5-116 chr7 109227956 109228185 + 1 NA Intergenic Intergenic -343483 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 113.5-52 chr18 45564043 45564243 + 1 NA intron (NM_001371319, intron 5 of 23) Arthur1B|DNA|hAT-Tip100 -51333 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 115.25-52 chr2 128254166 128254314 + 1 NA Intergenic THE1C|LTR|ERVL-MaLR 64628 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 145.25-39 chr2 33740041 33740227 + 1 NA intron (NR_126403, intron 1 of 5) L1PB1|LINE|L1 -11917 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 120.5-115 chr9 115062586 115062768 + 1 NA intron (NM_002160, intron 13 of 27) (TA)n|Simple_repeat|Simple_repeat 55480 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 237.25-7 chr12 6030515 6030818 + 1 NA intron (NM_000552, intron 21 of 51) MER5A|DNA|hAT-Charlie 9517 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 169.5-33 chr16 86220401 86220628 + 1 NA Intergenic Intergenic 24333 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 256.25-7 chr17 58085668 58086310 + 1 NA intron (NM_080677, intron 1 of 2) intron (NM_080677, intron 1 of 2) 2570 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 135.5-67 chr21 15738526 15738723 + 1 NA intron (NM_001352560, intron 1 of 23) L1M5|LINE|L1 8642 NM_001283042 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 203.5-30 chr3 95295198 95295540 + 1 NA Intergenic Intergenic 357106 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 257.75-18 chr5 12074961 12075259 + 1 NA Intergenic AluSx3|SINE|Alu -170664 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 124.25-74 chr7 33442441 33442692 + 1 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 313002 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 250.25-18 chr5 148150024 148150312 + 1 NA Intergenic Intergenic -18378 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 179.5-57 chr2 188848782 188848996 + 1 NA Intergenic L1MA6|LINE|L1 -58766 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 114.5-12 chr11 132749109 132749277 + 1 NA intron (NM_001319104, intron 1 of 6) MLT1A0|LTR|ERVL-MaLR 194444 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 143.5-49 chr2 57404589 57404839 + 1 NA Intergenic Intergenic -502937 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 132.5-34 chr15 99654360 99654572 + 1 NA intron (NM_001365201, intron 4 of 11) intron (NM_001365201, intron 4 of 11) 21488 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 134.75-77 chr9 95690282 95690507 + 1 NA Intergenic Intergenic -173337 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 200.75-23 chr2 161707251 161707600 + 1 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 83009 NM_001354446 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 222.5-17 chr14 100456526 100456799 + 1 NA intron (NM_001350949, intron 2 of 6) L1MEc|LINE|L1 80177 NM_001350947 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 118.5-116 chr8 107526153 107526365 + 1 NA Intergenic Intergenic -28341 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 209.25-4 chr11 108204758 108205068 + 1 NA intron (NM_001321307, intron 1 of 17) L1MB7|LINE|L1 17725 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 126.5-30 chr13 55744671 55744927 + 1 NA Intergenic Intergenic 570345 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 237.75-47 chrX 51443666 51444036 + 1 NA Intergenic Intergenic 36903 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 142.5-95 chr8 117713061 117713300 + 1 NA Intergenic Intergenic 192467 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 296.75-10 chr8 120132237 120132732 + 1 NA intron (NM_021110, intron 1 of 47) L1PA16|LINE|L1 7382 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 128.75-53 chr22 34971193 34971432 + 1 NA intron (NR_138042, intron 1 of 4) MER5A|DNA|hAT-Charlie 26604 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 139.25-75 chr7 50409029 50409376 + 1 NA Intergenic Intergenic 41148 NM_001346563 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 151.75-79 chr8 109647111 109647330 + 1 NA non-coding (NR_161375, exon 2 of 2) non-coding (NR_161375, exon 2 of 2) 1582 NM_001099749 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 151.5-11 chr10 19254994 19255283 + 1 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 206337 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 125.5-122 chr8 55518700 55518946 + 1 NA intron (NR_134323, intron 1 of 1) intron (NR_134323, intron 1 of 1) 2155 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 202.25-29 chr4 103915108 103915360 + 1 NA Intergenic Intergenic -195249 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 225.5-17 chr14 79869213 79869492 + 1 NA Intergenic Intergenic -342067 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 151.5-37 chr2 77128799 77129047 + 1 NA intron (NR_146416, intron 1 of 1) AluSq2|SINE|Alu 142958 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 136.5-25 chr12 45733773 45733954 + 1 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 4154 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 159.75-12 chr12 26664927 26665313 + 1 NA intron (NM_002223, intron 14 of 56) intron (NM_002223, intron 14 of 56) 168074 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 195.5-52 chr20 53470843 53471077 + 1 NA intron (NM_173485, intron 2 of 2) MIR|SINE|MIR -81810 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 114.5-34 chr17 62866165 62866415 + 1 NA Intergenic Intergenic 57788 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 188.5-22 chr18 10584996 10585254 + 1 NA Intergenic L1MA4|LINE|L1 41295 NR_146509 102724470 NR_146509 LINC01887 - long intergenic non-protein coding RNA 1887 ncRNA 229.25-4 chr11 18480419 18480830 + 1 NA exon (NM_006292, exon 10 of 10) exon (NM_006292, exon 10 of 10) 24768 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 144.25-60 chr5 23663342 23663591 + 1 NA Intergenic Intergenic 155811 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 145.75-55 chr3 53177766 53178003 + 1 NA intron (NM_001354679, intron 2 of 18) MER102a|DNA|hAT-Charlie 9181 NM_001354678 5580 Hs.155342 NM_006254 ENSG00000163932 PRKCD ALPS3|CVID9|MAY1|PKCD|nPKC-delta protein kinase C delta protein-coding 149.25-29 chr17 53487315 53487488 + 1 NA Intergenic Intergenic -335526 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 242.5-38 chr9 21057671 21058102 + 1 NA Intergenic Intergenic 20056 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 139.25-76 chr7 78494523 78494884 + 1 NA intron (NM_001301128, intron 5 of 20) intron (NM_001301128, intron 5 of 20) 147461 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 187.5-20 chr13 112088258 112088568 + 1 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -18706 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 209.75-46 chrX 95031000 95031246 + 1 NA Intergenic L1M3f|LINE|L1 32103 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 141.75-10 chr10 90967602 90967776 + 1 NA intron (NR_131214, intron 3 of 5) intron (NR_131214, intron 3 of 5) 20389 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 118.75-87 chr5 121097338 121097512 + 1 NA Intergenic L1MC1|LINE|L1 -225125 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 180.25-14 chr12 98563651 98563961 + 1 NA Intergenic AluJb|SINE|Alu -29819 NM_005888 5250 Hs.290404 NM_002635 ENSG00000075415 SLC25A3 OK/SW-cl.48|PHC|PTP solute carrier family 25 member 3 protein-coding 151.75-2 chr1 50328848 50329156 + 1 NA Intergenic MIR3|SINE|MIR 94441 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 201.5-69 chr9 121221772 121222170 + 1 NA intron (NM_001353054, intron 5 of 25) intron (NM_001353054, intron 5 of 25) -20102 NM_016322 51552 Hs.371563 NM_016322 ENSG00000119396 RAB14 FBP|RAB-14 RAB14, member RAS oncogene family protein-coding 131.5-31 chr16 79502766 79502937 + 1 NA Intergenic L1ME2|LINE|L1 97886 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 133.5-92 chr5 99987955 99988231 + 1 NA Intergenic Intergenic 400161 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 182.5-33 chr2 166452895 166453166 + 1 NA intron (NR_045628, intron 10 of 25) intron (NR_045628, intron 10 of 25) 33941 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 202.25-3 chr1 159597962 159598391 + 1 NA Intergenic Intergenic 10350 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 202.25-28 chr4 41766022 41766440 + 1 NA Intergenic Intergenic -17261 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 113.5-128 chr9 31953737 31953880 + 1 NA Intergenic L1MA9|LINE|L1 -430795 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 167.25-31 chr17 47342021 47342259 + 1 NA intron (NM_001195192, intron 6 of 21) intron (NM_001195192, intron 6 of 21) 18185 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 132.5-121 chr9 126850208 126850389 + 1 NA Intergenic AluJo|SINE|Alu -10341 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 115.75-13 chr11 48699408 48699620 + 1 NA Intergenic ALR/Alpha|Satellite|centr 210721 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 152.5-69 chr3 87398931 87399143 + 1 NA Intergenic Intergenic -122453 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 256.75-5 chr15 25414608 25415171 + 1 NA intron (NM_001354542, intron 1 of 11) intron (NM_001354542, intron 1 of 11) 23340 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 246.75-23 chr3 197670785 197671153 + 1 NA 3' UTR (NM_014687, exon 20 of 20) 3' UTR (NM_014687, exon 20 of 20) 3607 NR_030627 100126321 NR_030627 ENSG00000284146 MIR922 MIRN922|hsa-mir-922 microRNA 922 ncRNA 261.5-20 chr4 64529745 64530170 + 1 NA Intergenic Intergenic -120497 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 141.25-30 chr14 37020088 37020378 + 1 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -67842 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 126.5-92 chr5 83499155 83499371 + 1 NA intron (NM_001164098, intron 5 of 13) intron (NM_001164098, intron 5 of 13) 27519 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 157.5-34 chr16 79534282 79534494 + 1 NA Intergenic Intergenic 66349 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 155.25-24 chr15 89941430 89941655 + 1 NA Intergenic MLT1F2|LTR|ERVL-MaLR -28590 NM_001199058 100526783 NM_001199058 ENSG00000250021 ARPIN-AP3S2 ARPIN|C15orf38|C15orf38-AP3S2 ARPIN-AP3S2 readthrough protein-coding 125.5-100 chr4 163697771 163698008 + 1 NA intron (NM_001166373, intron 4 of 7) intron (NM_001166373, intron 4 of 7) -84355 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 132.5-49 chr2 37790204 37790365 + 1 NA Intergenic HAL1|LINE|L1 39427 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 205.25 chr1 98184218 98184465 + 1 NA Intergenic MIR1_Amn|SINE|MIR -26370 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 193.5-49 chr3 183633064 183633353 + 1 NA Intergenic AluSx1|SINE|Alu -2415 NM_001349425 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 117.5-102 chrX 69759831 69760011 + 1 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 143808 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 271.25-7 chr2 176399667 176400158 + 1 NA Intergenic Intergenic 130470 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 204.75-27 chr2 173879475 173879914 + 1 NA Intergenic Intergenic 84186 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 170.5-82 chr8 80408291 80408543 + 1 NA Intergenic Intergenic -77176 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 137.25-46 chr20 39712312 39712458 + 1 NA Intergenic L1MA1|LINE|L1 -292076 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 155.5-60 chr2 142580344 142580669 + 1 NA Intergenic AluSg|SINE|Alu -297158 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 277.25-28 chr8 42454597 42454931 + 1 NA intron (NM_006749, intron 5 of 10) AluJr|SINE|Alu 46467 NM_001257180 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 179.5-88 chr7 133658438 133658701 + 1 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 166319 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 131.25-12 chr1 235818412 235818661 + 1 NA intron (NM_000081, intron 3 of 52) intron (NM_000081, intron 3 of 52) 34524 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 162.75-26 chr16 58777911 58778110 + 1 NA Intergenic L1MA9|LINE|L1 -43694 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 144.5-12 chr10 58049927 58050204 + 1 NA Intergenic MIR3|SINE|MIR 217829 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 141.5-92 chr5 39699317 39699514 + 1 NA Intergenic L2a|LINE|L2 178984 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 180.75-9 chr1 200129079 200129294 + 1 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 86361 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 227.75 chr1 81897436 81897663 + 1 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 95096 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 171.5-37 chr2 21259351 21259549 + 1 NA Intergenic Intergenic 135464 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 114.75-84 chr6 53461836 53462029 + 1 NA Intergenic Intergenic 83169 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 178.5-17 chr15 33512981 33513217 + 1 NA intron (NM_001243996, intron 3 of 102) intron (NM_001243996, intron 3 of 102) 202132 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 125.25-7 chr10 64288512 64288802 + 1 NA Intergenic Intergenic -536871 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 200.25-17 chr13 44008137 44008368 + 1 NA Intergenic Intergenic -14083 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 161.75-32 chr3 55920621 55920820 + 1 NA intron (NR_132749, intron 12 of 17) intron (NR_132749, intron 12 of 17) -68126 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 172.5-33 chr2 138159900 138160144 + 1 NA Intergenic Intergenic 58138 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 215.5-39 chr5 61371237 61371561 + 1 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 39141 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 113.5-7 chr1 158751122 158751287 + 1 NA Intergenic Intergenic -3612 NM_001005184 128371 Hs.553591 NM_001005184 ENSG00000180433 OR6K6 OR1-21 olfactory receptor family 6 subfamily K member 6 protein-coding 194.25-50 chr8 140030240 140030489 + 1 NA intron (NM_001160372, intron 17 of 22) L1MC|LINE|L1 70171 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 166.25-13 chr13 56294773 56295057 + 1 NA Intergenic Intergenic -846003 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 122.5-16 chr11 84415910 84416140 + 1 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -98686 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 129.5-95 chr9 96743742 96744070 + 1 NA Intergenic Cheshire|DNA|hAT-Charlie 18085 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 155.25-6 chr10 98489972 98490256 + 1 NA exon (NM_001166244, exon 9 of 11) exon (NM_001166244, exon 9 of 11) -43151 NM_001322491 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 169.5-23 chr14 44530635 44530879 + 1 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 23348 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 195.25-44 chr7 68728520 68728772 + 1 NA Intergenic Intergenic 708393 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 139.5-24 chr13 22131617 22131864 + 1 NA Intergenic L1MEh|LINE|L1 -78545 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 128.25-28 chr16 80731289 80731525 + 1 NA intron (NM_152342, intron 1 of 6) HAL1|LINE|L1 73191 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 194.25-3 chr1 170633920 170634197 + 1 NA Intergenic MamGypsy2-I|LTR|Gypsy -30073 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 183.25-8 chr12 32728562 32728886 + 1 NA intron (NM_001330380, intron 10 of 18) intron (NM_001330380, intron 10 of 18) 27173 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 163.5-6 chr1 104344895 104345317 + 1 NA Intergenic Intergenic 272083 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 178.25-33 chr22 40586573 40586787 + 1 NA intron (NM_020831, intron 2 of 14) intron (NM_020831, intron 2 of 14) 50039 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 172.25-75 chr8 133275574 133275853 + 1 NA intron (NM_001258432, intron 1 of 13) intron (NM_001258432, intron 1 of 13) 21539 NM_001258432 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 170.25-2 chr1 112555735 112555942 + 1 NA intron (NM_017744, intron 12 of 14) intron (NM_017744, intron 12 of 14) 46873 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 247.5-23 chr4 42789559 42790008 + 1 NA Intergenic MSTA|LTR|ERVL-MaLR -103483 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 140.5 chr1 48795304 48795534 + 1 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -18450 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 163.5-53 chr3 38664583 38664819 + 1 NA Intergenic L1MA4|LINE|L1 -15014 NM_001354701 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 186.25-25 chr2 36700156 36700417 + 1 NA intron (NM_001177969, intron 1 of 14) intron (NM_001177969, intron 1 of 14) 3579 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 233.5-56 chr8 122494432 122494699 + 1 NA intron (NR_131202, intron 2 of 3) L1PA14|LINE|L1 74079 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 136.5-87 chr4 161505200 161505374 + 1 NA intron (NM_001128428, intron 10 of 14) intron (NM_001128428, intron 10 of 14) -517446 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 140.25-91 chr8 99958437 99958582 + 1 NA Intergenic L1MCa|LINE|L1 -46073 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 185.25-2 chr1 70883760 70884116 + 1 NA intron (NR_028293, intron 2 of 4) AluSz|SINE|Alu -162568 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 127.75-32 chr14 67624083 67624231 + 1 NA intron (NM_001172, intron 2 of 7) intron (NM_001172, intron 2 of 7) 4237 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 165.5-12 chr11 40526999 40527255 + 1 NA intron (NM_020929, intron 2 of 4) L1ME3A|LINE|L1 -233997 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 188.5-14 chr14 60352084 60352416 + 1 NA Intergenic Intergenic 29054 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 253.5-29 chr22 25075467 25075885 + 1 NA intron (NM_001145206, intron 4 of 10) AluSc8|SINE|Alu 37016 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 227.5-29 chr20 17150545 17150849 + 1 NA Intergenic L1ME1|LINE|L1 -75410 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 113.75-89 chr5 66213589 66213779 + 1 NA Intergenic L1MEf|LINE|L1 -4238 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 197.75-2 chr1 113649908 113650234 + 1 NA intron (NM_001142782, intron 13 of 20) intron (NM_001142782, intron 13 of 20) 109084 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 122.5-29 chr14 37393979 37394217 + 1 NA intron (NM_138731, intron 11 of 13) L1PB1|LINE|L1 196161 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 136.25-47 chr2 214406340 214406531 + 1 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -4619 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 132.75-94 chr7 97032775 97033062 + 1 NA Intergenic MIRc|SINE|MIR -8087 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 236.5-34 chr3 133770846 133771222 + 1 NA intron (NM_001063, intron 14 of 16) L1MC4|LINE|L1 -12989 NM_021203 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 203.25-17 chr12 92487968 92488338 + 1 NA Intergenic Intergenic 21474 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 236.25-11 chr17 53742997 53743261 + 1 NA Intergenic Intergenic -79798 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 221.25-17 chr2 224853103 224853384 + 1 NA intron (NM_001290263, intron 16 of 55) intron (NM_001290263, intron 16 of 55) 93806 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 168.5-2 chr1 160307732 160307967 + 1 NA intron (NM_001098398, intron 13 of 32) intron (NM_001098398, intron 13 of 32) -9416 NR_002190 474338 Hs.621179 NR_002190 SUMO1P3 - SUMO1 pseudogene 3 pseudo 132.5-70 chr22 33987963 33988221 + 1 NA Intergenic Charlie7a|DNA|hAT-Charlie -65204 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 238.5-15 chr16 64305765 64306026 + 1 NA Intergenic Intergenic 816168 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 289.5-14 chr2 195882262 195882784 + 1 NA intron (NM_018897, intron 35 of 64) L1MB2|LINE|L1 186314 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 243.25-4 chr11 34641042 34641577 + 1 NA intron (NM_001206616, intron 1 of 8) L2a|LINE|L2 8743 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 343.75-6 chr2 111983611 111984125 + 1 NA intron (NM_006343, intron 8 of 18) intron (NM_006343, intron 8 of 18) -71401 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 171.5-79 chr6 89220483 89220731 + 1 NA intron (NM_001267582, intron 2 of 11) intron (NM_001267582, intron 2 of 11) -2830 NM_001256703 2569 Hs.99927 NM_002042 ENSG00000146276 GABRR1 - gamma-aminobutyric acid type A receptor rho1 subunit protein-coding 116.75-77 chr7 111461358 111461581 + 1 NA intron (NM_001350961, intron 4 of 7) L1ME4c|LINE|L1 100822 NM_032549 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 116.5-49 chr17 75847186 75847396 + 1 NA intron (NM_012478, intron 6 of 7) MIR|SINE|MIR -2574 NM_199242 201294 Hs.41045 NM_199242 ENSG00000092929 UNC13D FHL3|HLH3|HPLH3|Munc13-4 unc-13 homolog D protein-coding 244.75-5 chr10 65647528 65648012 + 1 NA intron (NR_120647, intron 3 of 5) L1MEf|LINE|L1 76345 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 140.5-9 chr10 108525101 108525282 + 1 NA Intergenic MER4CL34|LTR|ERV1 -455898 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 119.25-47 chr2 32245563 32245687 + 1 NA intron (NM_001302504, intron 3 of 7) L1MA2|LINE|L1 19261 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 134.25-68 chr5 64100444 64100692 + 1 NA Intergenic Intergenic -65275 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 125.5-136 chrX 154915525 154915705 + 1 NA intron (NM_000132, intron 14 of 25) L1MA4|LINE|L1 -28157 NR_036260 100422977 NR_036260 ENSG00000221603 MIR1184-3 - microRNA 1184-3 ncRNA 141.5-17 chr10 113766553 113766748 + 1 NA exon (NM_182601, exon 3 of 12) exon (NM_182601, exon 3 of 12) 1831 NM_182601 79949 Hs.228320 NM_024889 ENSG00000148735 PLEKHS1 C10orf81|HEL185 pleckstrin homology domain containing S1 protein-coding 148.5-13 chr11 72093201 72093401 + 1 NA intron (NR_026886, intron 4 of 6) intron (NR_026886, intron 4 of 6) 9996 NM_017907 55004 Hs.731528 NM_017907 ENSG00000149357 LAMTOR1 C11orf59|PDRO|Ragulator1|p18|p27RF-Rho late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 protein-coding 233.25-14 chr16 75636068 75636337 + 1 NA intron (NM_001130089, intron 5 of 14) intron (NM_001130089, intron 5 of 14) 11485 NM_005548 3735 Hs.3100 NM_005548 ENSG00000065427 KARS CMTRIB|DFNB89|KARS1|KARS2|KRS lysyl-tRNA synthetase protein-coding 168.25-33 chr2 229401789 229401982 + 1 NA intron (NM_139072, intron 10 of 12) L1M5|LINE|L1 -130598 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 147.25-38 chr22 25722354 25722578 + 1 NA 3' UTR (NM_005160, exon 21 of 21) 3' UTR (NM_005160, exon 21 of 21) -19722 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 158.5-64 chr22 47507482 47507691 + 1 NA Intergenic L1PB3|LINE|L1 -20475 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 140.75-23 chr16 47970862 47971139 + 1 NA intron (NR_146502, intron 1 of 1) intron (NR_146502, intron 1 of 1) 5311 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 197.75-30 chr3 133513101 133513351 + 1 NA Intergenic ERVL-int|LTR|ERVL -22080 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 177.5-47 chr3 15841706 15841957 + 1 NA intron (NM_001349279, intron 1 of 28) L1MA2|LINE|L1 17983 NM_015199 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 186.5-2 chr1 100436202 100436555 + 1 NA intron (NM_001319212, intron 5 of 13) HAL1|LINE|L1 83872 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 138.25-59 chr3 89620310 89620517 + 1 NA Intergenic Intergenic 512792 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 228.25-40 chr8 136781488 136781811 + 1 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 250851 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 125.5-14 chr10 43611722 43611852 + 1 NA intron (NM_145312, intron 4 of 4) L1ME4b|LINE|L1 5349 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 130.25-60 chr22 36338762 36339088 + 1 NA intron (NM_002473, intron 3 of 40) intron (NM_002473, intron 3 of 40) 49142 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 180.75-23 chr14 49458048 49458431 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR 128141 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 205.5-5 chr10 65134171 65134503 + 1 NA Intergenic Intergenic -209819 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 136.5-7 chr1 191882510 191882766 + 1 NA Intergenic Intergenic -275824 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 228.75-30 chr3 124407691 124407981 + 1 NA intron (NM_001024660, intron 13 of 59) AluY|SINE|Alu 33504 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 171.75-5 chr10 33796800 33797072 + 1 NA Intergenic MER21B|LTR|ERVL -24256 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 229.5-46 chr7 38588730 38589054 + 1 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 42481 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 150.5-91 chr8 84418209 84418480 + 1 NA intron (NM_001354308, intron 2 of 9) MIR|SINE|MIR 2860 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 223.5-43 chr20 8404468 8404836 + 1 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 155948 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 116.5-113 chr7 77819383 77819514 + 1 NA intron (NM_001366088, intron 1 of 11) L1MA5A|LINE|L1 20477 NM_001366088 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 249.5-30 chr7 48666262 48666602 + 1 NA Intergenic L1MC4|LINE|L1 -258115 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 225.75-4 chr1 220054277 220054784 + 1 NA Intergenic AluJb|SINE|Alu -8025 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 118.25-115 chr8 132703059 132703250 + 1 NA Intergenic Intergenic -27609 NR_135911 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 171.5-38 chr2 23870547 23870850 + 1 NA intron (NR_125717, intron 8 of 28) intron (NR_125717, intron 8 of 28) 56425 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 200.75-50 chrX 42074422 42074815 + 1 NA Intergenic Intergenic -151064 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 149.5-16 chr11 115307606 115307896 + 1 NA intron (NM_001098517, intron 1 of 8) MARNA|DNA|TcMar-Mariner -25826 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 123.5-119 chrX 47258684 47258884 + 1 NA Intergenic Intergenic 25775 NM_001371072 155.5-91 chr8 58879152 58879312 + 1 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -219379 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 132.75-54 chr2 46915587 46915848 + 1 NA promoter-TSS (NM_001171509) promoter-TSS (NM_001171509) 89 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 228.75-31 chr4 91661757 91662019 + 1 NA Intergenic L1PB4|LINE|L1 615414 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 162.5-58 chr3 197612160 197612423 + 1 NA Intergenic Intergenic 15590 NR_003266 220729 Hs.478854 NR_003266 ENSG00000214135 LOC220729 - succinate dehydrogenase complex flavoprotein subunit A pseudogene pseudo 154.75-69 chrX 96083768 96083988 + 1 NA Intergenic LTR8|LTR|ERV1 254024 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 221.5-45 chr7 48182864 48183296 + 1 NA intron (NM_152701, intron 1 of 61) intron (NM_152701, intron 1 of 61) 11622 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 221.75-21 chr5 20133935 20134390 + 1 NA intron (NM_001291956, intron 2 of 14) AluSz6|SINE|Alu -145962 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 190.5-18 chr12 1746032 1746278 + 1 NA intron (NM_024551, intron 1 of 7).2 L1M4|LINE|L1 55085 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 254.75-19 chr5 158800035 158800316 + 1 NA intron (NM_001324107, intron 8 of 15) L1ME3G|LINE|L1 297781 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 228.5-16 chr2 21852661 21853051 + 1 NA Intergenic L1ME4c|LINE|L1 -142204 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 160.5-66 chr7 1080368 1080625 + 1 NA intron (NM_001134395, intron 2 of 4) CpG -6311 NM_001039966 2852 Hs.20961 NM_001505 ENSG00000164850 GPER1 CEPR|CMKRL2|DRY12|FEG-1|GPCR-Br|GPER|GPR30|LERGU|LERGU2|LyGPR|mER G protein-coupled estrogen receptor 1 protein-coding 200.5-70 chr9 84950018 84950315 + 1 NA intron (NM_001018064, intron 15 of 17) MIRb|SINE|MIR 244265 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 164.5-10 chr10 51095920 51096137 + 1 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 21541 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 241.75-15 chr2 173440815 173441092 + 1 NA Intergenic Intergenic 86081 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 200.75-24 chr2 176663107 176663358 + 1 NA Intergenic MIR3|SINE|MIR 25478 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 162.5-19 chr12 61999110 61999482 + 1 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 193543 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 167.5-62 chr4 100471492 100471762 + 1 NA intron (NM_001159694, intron 3 of 10) L1MB7|LINE|L1 46395 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 175.75-5 chr13 73106671 73107049 + 1 NA Intergenic Intergenic 47855 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 117.75-84 chr9 130776472 130776789 + 1 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) -58624 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 234.75-8 chr11 74316563 74317037 + 1 NA intron (NR_120556, intron 3 of 6) L1MD2|LINE|L1 -5160 NR_110031 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 177.5-32 chr2 65634473 65634743 + 1 NA Intergenic Intergenic -202009 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 140.25-81 chr6 137472978 137473237 + 1 NA Intergenic Intergenic 21287 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 214.75-15 chr17 62407146 62407395 + 1 NA intron (NM_001144933, intron 10 of 11) intron (NM_001144933, intron 10 of 11) -16615 NM_181725 339175 Hs.381204 NM_181725 ENSG00000087995 METTL2A METTL2 methyltransferase like 2A protein-coding 113.5-103 chr5 161120133 161120394 + 1 NA Intergenic Intergenic -181637 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 157.25-59 chr7 50528860 50529218 + 1 NA intron (NM_001242888, intron 3 of 12) intron (NM_001242888, intron 3 of 12) -2720 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 161.5-50 chr2 171718832 171719030 + 1 NA intron (NM_001271787, intron 5 of 15) MIRb|SINE|MIR 31176 NM_001320883 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 202.25-39 chr8 62412842 62413179 + 1 NA intron (NM_001304533, intron 1 of 6) L1P4|LINE|L1 164156 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 144.75-28 chr14 91360498 91360666 + 1 NA intron (NM_001080414, intron 3 of 29) intron (NM_001080414, intron 3 of 29) 57238 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 266.5-24 chr8 79697433 79697856 + 1 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat 68831 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 142.5-57 chr3 106647938 106648268 + 1 NA Intergenic Intergenic 592535 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 222.5-14 chr14 46020432 46020671 + 1 NA Intergenic Intergenic -43608 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 161.5-78 chr6 139944886 139945126 + 1 NA Intergenic Intergenic -31313 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 171.75-53 chr7 54342021 54342257 + 1 NA intron (NR_120516, intron 1 of 2) intron (NR_120516, intron 1 of 2) 11442 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 294.5-6 chr12 21614931 21615626 + 1 NA Intergenic Intergenic -10431 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 293.75-6 chr2 69332502 69333072 + 1 NA intron (NM_002056, intron 14 of 18) intron (NM_002056, intron 14 of 18) 54440 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 259.75-18 chr5 114949356 114949785 + 1 NA Intergenic Intergenic -176157 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 181.75-17 chr2 165057570 165057804 + 1 NA Intergenic AluJb|SINE|Alu -102162 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 200.25-14 chr11 11176502 11176953 + 1 NA Intergenic MER45A|DNA|hAT-Tip100 176523 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 180.75-61 chr9 33057310 33057684 + 1 NA intron (NM_018225, intron 7 of 11) intron (NM_018225, intron 7 of 11) 19177 NM_018225 55234 Hs.655351 NM_018225 ENSG00000122692 SMU1 BWD|SMU-1|fSAP57 SMU1 DNA replication regulator and spliceosomal factor protein-coding 218.5-50 chr7 56235668 56236038 + 1 NA Intergenic L1PB3|LINE|L1 -119436 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 172.75-18 chr2 683826 684203 + 1 NA Intergenic MLT1B|LTR|ERVL-MaLR -6608 NM_152834 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 239.75-25 chr5 10705321 10705761 + 1 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 55693 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 134.5-45 chr2 61580956 61581221 + 1 NA Intergenic AluJb|SINE|Alu -42732 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 313.5-10 chr3 37795119 37795694 + 1 NA intron (NR_110532, intron 4 of 5) intron (NR_110532, intron 4 of 5) 66374 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 148.75-10 chr11 91738844 91739110 + 1 NA Intergenic L1PB3|LINE|L1 -486057 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 178.5-95 chr9 4787674 4787972 + 1 NA Intergenic L1M1|LINE|L1 -5011 NM_001286700 10171 Hs.194121 NM_005772 ENSG00000120158 RCL1 RNAC|RPCL1 RNA terminal phosphate cyclase like 1 protein-coding 132.25-31 chr14 89207235 89207399 + 1 NA intron (NM_001085471, intron 4 of 6) L1MC5|LINE|L1 209916 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 179.25-54 chr9 75688654 75688935 + 1 NA Intergenic Intergenic -201850 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 157.25-34 chr2 50266979 50267191 + 1 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 80669 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 123.75-42 chr14 81963406 81963591 + 1 NA Intergenic LTR85c|LTR|Gypsy? -220360 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 141.75-2 chr1 164140024 164140178 + 1 NA Intergenic L1MC1|LINE|L1 -419259 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 161.5-73 chr5 112195469 112195757 + 1 NA intron (NM_001347887, intron 16 of 23) intron (NM_001347887, intron 16 of 23) -32670 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 240.5-29 chr2 237895842 237896158 + 1 NA intron (NM_001308353, intron 3 of 3) intron (NM_001308353, intron 3 of 3) 36377 NM_005855 10267 Hs.471783 NM_005855 ENSG00000132329 RAMP1 - receptor activity modifying protein 1 protein-coding 118.75-19 chr12 15080762 15080919 + 1 NA Intergenic Intergenic -71083 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 162.5-76 chr6 12390267 12390500 + 1 NA Intergenic Intergenic 100022 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 125.25-4 chr10 43755766 43755906 + 1 NA Intergenic Intergenic 22989 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 131.5-69 chr4 171269939 171270125 + 1 NA Intergenic Intergenic 83848 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 116.5-80 chr3 33384511 33384774 + 1 NA intron (NM_012157, intron 14 of 14) MER5B|DNA|hAT-Charlie 55736 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 126.5-60 chr20 8811929 8812082 + 1 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) -19180 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 189.5-40 chr3 180990661 180990879 + 1 NA promoter-TSS (NR_033723) promoter-TSS (NR_033723) -996 NR_033722 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 187.5-86 chr8 106703913 106704174 + 1 NA intron (NM_181354, intron 6 of 13) intron (NM_181354, intron 6 of 13) -22064 NM_001198534 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 188.5-59 chr9 73419682 73419956 + 1 NA Intergenic L1MDa|LINE|L1 267954 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 265.5-9 chr12 88737448 88737742 + 1 NA Intergenic Intergenic -157122 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 129.75-78 chr8 59781048 59781331 + 1 NA Intergenic MER34-int|LTR|ERV1 500211 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 220.25-15 chr14 50832249 50832533 + 1 NA Intergenic L1MD2|LINE|L1 -1270 NM_182946 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 224.75-5 chr11 105936371 105936645 + 1 NA intron (NM_000829, intron 14 of 16) intron (NM_000829, intron 14 of 16) 85732 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 128.5-99 chr9 32126625 32126853 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -257864 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 119.5-59 chr2 95031618 95031872 + 1 NA intron (NM_022440, intron 1 of 1) intron (NM_022440, intron 1 of 1) 6037 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 481.75-3 chr7 2181683 2182361 + 1 NA intron (NM_001013837, intron 10 of 18) L1PB2|LINE|L1 50923 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 201.25-42 chr9 34907322 34907632 + 1 NA Intergenic LTR48B|LTR|ERV1 -11713 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 170.25-41 chr20 54626092 54626529 + 1 NA intron (NM_018431, intron 6 of 7) intron (NM_018431, intron 6 of 7) 150717 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 172.75-27 chr3 104067055 104067350 + 1 NA Intergenic L2a|LINE|L2 -543086 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 137.5-70 chr20 45084641 45084875 + 1 NA Intergenic MIRb|SINE|MIR 16369 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 197.5-56 chr7 88023971 88024332 + 1 NA intron (NM_001324421, intron 3 of 28) L1MA3|LINE|L1 89900 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 123.5-76 chr4 76061410 76061592 + 1 NA intron (NM_001130017, intron 1 of 9) L2b|LINE|L2 -13194 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 208.75-23 chr4 95366982 95367302 + 1 NA intron (NM_003728, intron 1 of 15) MIRc|SINE|MIR 181831 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 173.75-41 chr5 148088625 148088824 + 1 NA intron (NM_006846, intron 6 of 32) intron (NM_006846, intron 6 of 32) 24744 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 132.75-87 chr6 88802989 88803184 + 1 NA intron (NM_003800, intron 11 of 15) Charlie13a|DNA|hAT-Charlie 160532 NM_003800 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 241.5-22 chr2 220286287 220286749 + 1 NA Intergenic Intergenic -379953 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 127.75-54 chr3 102206133 102206364 + 1 NA Intergenic L1M1|LINE|L1 42543 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 169.25-15 chr12 16620147 16620532 + 1 NA Intergenic Intergenic -12125 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 214.25-10 chr11 34758824 34759177 + 1 NA Intergenic MIR3|SINE|MIR 126434 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 113.75-51 chr2 38927235 38927410 + 1 NA intron (NM_001145451, intron 2 of 15) intron (NM_001145451, intron 2 of 15) 7959 NM_001367623 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 211.5-54 chr7 47872081 47872308 + 1 NA intron (NM_138295, intron 24 of 56) intron (NM_138295, intron 24 of 56) 76297 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 158.5-24 chr11 114832371 114832604 + 1 NA Intergenic Intergenic 153960 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 179.5-89 chr7 143302296 143302629 + 1 NA intron (NM_001224, intron 9 of 11) intron (NM_001224, intron 9 of 11) 12874 NM_001224 835 Hs.368982 NM_001224 ENSG00000106144 CASP2 CASP-2|ICH1|NEDD-2|NEDD2|PPP1R57 caspase 2 protein-coding 196.5-21 chr11 99794716 99794994 + 1 NA intron (NM_175566, intron 1 of 21) L1PA15|LINE|L1 238710 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 242.5-8 chr16 2301549 2301810 + 1 NA intron (NM_001089, intron 12 of 32) AluSx1|SINE|Alu 27059 NR_039868 100616241 NR_039868 ENSG00000264004 MIR4717 - microRNA 4717 ncRNA 118.25-118 chr9 24741468 24741661 + 1 NA Intergenic Intergenic -195667 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 138.5-21 chr12 40274263 40274507 + 1 NA intron (NM_198578, intron 14 of 50) MIRb|SINE|MIR 49388 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 171.75-6 chr10 36632625 36632953 + 1 NA Intergenic Intergenic -493068 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 176.75-44 chr5 72040188 72040431 + 1 NA Intergenic Intergenic -67166 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 193.5-68 chr6 110755868 110756179 + 1 NA intron (NM_001300964, intron 1 of 12) AluSx3|SINE|Alu -58598 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 162.5-13 chr10 72178477 72178799 + 1 NA intron (NM_001369110, intron 5 of 8) MLT1E2|LTR|ERVL-MaLR 37318 NM_001369107 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 134.5-91 chr7 82557491 82557625 + 1 NA Intergenic L1PA15-16|LINE|L1 -113602 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 192.5-45 chr4 114880189 114880413 + 1 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 223542 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 214.5-13 chr12 108936936 108937262 + 1 NA intron (NM_018711, intron 10 of 15) intron (NM_018711, intron 10 of 15) 57007 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 272.5-13 chr4 55855949 55856340 + 1 NA intron (NM_001024924, intron 1 of 18) L2c|LINE|L2 2494 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 274.75-7 chr16 86864439 86864895 + 1 NA Intergenic L1PA15|LINE|L1 142576 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 195.5-86 chr8 83769718 83770081 + 1 NA Intergenic L1PA14|LINE|L1 366141 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 194.5-3 chr1 111022733 111023074 + 1 NA Intergenic L1P4a|LINE|L1 -58959 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 234.75-9 chr11 80859381 80859754 + 1 NA Intergenic Intergenic -96764 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 227.5-22 chr17 9651381 9651751 + 1 NA intron (NM_001267576, intron 1 of 14) intron (NM_001267576, intron 1 of 14) 6029 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 159.5-27 chr14 90813982 90814241 + 1 NA intron (NM_001320421, intron 1 of 20) intron (NM_001320421, intron 1 of 20) 2306 NM_001320421 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 184.5-40 chr2 35507896 35508095 + 1 NA Intergenic Intergenic 36590 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 150.75-50 chr3 127142601 127142844 + 1 NA Intergenic Intergenic -50409 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 114.75-40 chr17 70744711 70744864 + 1 NA Intergenic Intergenic 457392 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 115.75-99 chr8 140194722 140194868 + 1 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -94260 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 120.5-93 chr6 126128271 126128454 + 1 NA Intergenic Intergenic 141822 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 164.5-69 chr5 15701780 15702010 + 1 NA intron (NM_001278317, intron 2 of 3) L2c|LINE|L2 -86893 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 242.25-16 chr20 289844 290281 + 1 NA intron (NM_153269, intron 2 of 10) MIR3|SINE|MIR 688 NM_153269 140680 Hs.348112 NM_080571 ENSG00000196476 C20orf96 dJ1103G7.2 chromosome 20 open reading frame 96 protein-coding 180.25-44 chr3 123528210 123528594 + 1 NA exon (NM_198402, exon 4 of 7) exon (NM_198402, exon 4 of 7) 56215 NM_001329787 201562 Hs.705480 NM_198402 ENSG00000206527 HACD2 PTPLB 3-hydroxyacyl-CoA dehydratase 2 protein-coding 140.5-75 chr4 59909266 59909425 + 1 NA Intergenic MLT2A1|LTR|ERVL 895772 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 153.25-53 chr8 80689661 80689931 + 1 NA intron (NM_001033723, intron 3 of 8) intron (NM_001033723, intron 3 of 8) 184672 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 209.25-45 chr8 28518447 28518774 + 1 NA intron (NM_017412, intron 3 of 7) L1ME1|LINE|L1 -13428 NR_036250 100422903 NR_036250 ENSG00000265251 MIR4288 - microRNA 4288 ncRNA 243.25-17 chr7 28216096 28216569 + 1 NA intron (NR_034097, intron 2 of 3) MIRb|SINE|MIR -35537 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 165.5-61 chr3 23970338 23970589 + 1 NA intron (NM_005126, intron 7 of 7) intron (NM_005126, intron 7 of 7) 24342 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 138.5-39 chr15 97555419 97555569 + 1 NA intron (NR_110756, intron 2 of 3) L1ME4a|LINE|L1 5204 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 163.75-43 chr3 111670494 111670752 + 1 NA Intergenic Intergenic -4053 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 175.25-33 chr20 11173760 11174036 + 1 NA Intergenic L1ME3A|LINE|L1 99485 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 135.75-92 chr7 47805242 47805562 + 1 NA intron (NM_138295, intron 52 of 56) intron (NM_138295, intron 52 of 56) 10111 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 178.5-36 chr2 230561260 230561560 + 1 NA Intergenic AluSz|SINE|Alu 139119 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 245.25-30 chr8 107899807 107900249 + 1 NA 3' UTR (NM_001317942, exon 5 of 5) 3' UTR (NM_001317942, exon 5 of 5) 181911 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 228.75-4 chr10 43967802 43968221 + 1 NA intron (NR_033846, intron 7 of 7) intron (NR_033846, intron 7 of 7) 55609 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 140.25-28 chr17 71487119 71487290 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -285025 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 130.75-63 chr5 129740763 129740934 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -7246 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 211.5-26 chr2 116998672 116999052 + 1 NA Intergenic Intergenic -815829 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 124.5-12 chr1 223795539 223795712 + 1 NA intron (NM_005426, intron 14 of 18) intron (NM_005426, intron 14 of 18) 50322 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 119.5-130 chrX 149854876 149855015 + 1 NA intron (NR_109813, intron 1 of 2) MER34B-int|LTR|ERV1 -26196 NM_001166400 4107 Hs.522803 NM_005364 ENSG00000156009 MAGEA8 CT1.8|MAGE8 MAGE family member A8 protein-coding 126.75-59 chr3 77935921 77936171 + 1 NA Intergenic Intergenic 112917 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 246.25-3 chr10 42087824 42088247 + 1 NA Intergenic Intergenic 280010 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 237.75-37 chr4 175736276 175736669 + 1 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 51204 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 113.5-119 chr8 119980751 119980928 + 1 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 107117 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 141.5-57 chr2 74588719 74588971 + 1 NA intron (NM_001321739, intron 4 of 10) (TCAT)n|Simple_repeat|Simple_repeat 34685 NM_001318867 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 116.5-29 chr12 117688657 117688846 + 1 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 280239 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 149.75-64 chr7 111744754 111744944 + 1 NA intron (NM_001363540, intron 44 of 52) intron (NM_001363540, intron 44 of 52) -63656 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 221.5-3 chr1 106769292 106769726 + 1 NA Intergenic Intergenic -48730 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 136.5-57 chr2 114707933 114708101 + 1 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 125531 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 126.75-30 chr16 77465971 77466114 + 1 NA Intergenic L1MB4|LINE|L1 -31008 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 117.25-19 chr11 45328605 45328794 + 1 NA Intergenic Intergenic -26672 NR_120557 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 193.5-74 chr8 48171365 48171575 + 1 NA Intergenic AluJo|SINE|Alu 163039 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 281.5 chr1 55012310 55012824 + 1 NA 3' UTR (NM_057176, exon 4 of 4) 3' UTR (NM_057176, exon 4 of 4) 13634 NM_057176 7809 Hs.151291 NM_057176 ENSG00000162399 BSND BART|DFNB73 barttin CLCNK type accessory beta subunit protein-coding 263.5-24 chr4 76230344 76230778 + 1 NA intron (NM_001242936, intron 2 of 7) L1PB1|LINE|L1 16521 NM_001242936 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 123.25-9 chr10 52966497 52966704 + 1 NA Intergenic LTR48B|LTR|ERV1 -194900 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 135.25-61 chr3 31260448 31260593 + 1 NA Intergenic AluSx4|SINE|Alu -98733 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 242.5-13 chr2 54203686 54204159 + 1 NA intron (NM_138448, intron 3 of 3) MER30|DNA|hAT-Charlie 52307 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 143.5-67 chr3 111266240 111266412 + 1 NA Intergenic L1MD1|LINE|L1 194510 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 134.25-57 chr3 90057449 90057664 + 1 NA Intergenic Intergenic 949935 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 253.25-28 chr6 157364575 157365116 + 1 NA Intergenic Charlie18a|DNA|hAT-Charlie -16345 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 164.75-46 chr3 139152339 139152639 + 1 NA Intergenic L1PA15|LINE|L1 48304 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 219.75-9 chr13 78730136 78730495 + 1 NA Intergenic MLT1A0|LTR|ERVL-MaLR -71160 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 225.5-11 chr10 87065690 87065991 + 1 NA intron (NM_001318905, intron 8 of 15) MIR|SINE|MIR 28247 NM_001318900 2746 Hs.500409 NM_005271 ENSG00000148672 GLUD1 GDH|GDH1|GLUD glutamate dehydrogenase 1 protein-coding 222.5-46 chr6 137491774 137492016 + 1 NA TTS (NM_175747) TTS (NM_175747) 2499 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 202.5-16 chr19 35472820 35473125 + 1 NA Intergenic L2a|LINE|L2 17492 NM_207392 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 139.75-16 chr12 2731964 2732267 + 1 NA Intergenic Intergenic -40958 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 183.75-60 chr9 1269427 1269666 + 1 NA Intergenic LTR16A1|LTR|ERVL 218059 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 265.5-8 chr11 67135315 67135631 + 1 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 16210 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 135.5-77 chr3 144246313 144246494 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 273322 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 138.25-32 chr16 76280843 76281089 + 1 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 3565 NM_001322181 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 227.5-44 chr5 117659966 117660222 + 1 NA Intergenic Intergenic -70267 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 197.5-51 chr5 163030288 163030523 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -407166 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 171.75-55 chr8 2840427 2840739 + 1 NA Intergenic Intergenic -112132 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 201.5-37 chr3 10535896 10536163 + 1 NA intron (NM_001353564, intron 1 of 20) L1MD2|LINE|L1 -30443 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 127.5-118 chr7 66187192 66187426 + 1 NA Intergenic Intergenic -18025 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 113.5-124 chr8 133392276 133392442 + 1 NA Intergenic Intergenic -95055 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 189.75-45 chr7 104785506 104785928 + 1 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 18375 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 276.75-5 chr11 72068517 72068998 + 1 NA intron (NM_001286561, intron 2 of 26) MARNA|DNA|TcMar-Mariner 3545 NR_036123 100422953 NR_036123 ENSG00000263742 MIR3165 mir-3165 microRNA 3165 ncRNA 153.5-35 chr17 2699955 2700249 + 1 NA intron (NM_001366662, intron 9 of 25) intron (NM_001366662, intron 9 of 25) -7183 NR_106834 102465465 NR_106834 ENSG00000273606 MIR6776 hsa-mir-6776 microRNA 6776 ncRNA 178.25-53 chr6 44821782 44822083 + 1 NA intron (NR_146632, intron 11 of 11) Charlie23a|DNA|hAT-Charlie -270051 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 254.5-35 chr9 80513772 80514167 + 1 NA Intergenic L1PA11|LINE|L1 538946 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 184.75-61 chr9 119814275 119814716 + 1 NA Intergenic MER58B|DNA|hAT-Charlie -120565 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 218.5-30 chr20 38697659 38698064 + 1 NA Intergenic Intergenic -26625 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 157.75-46 chr2 234253948 234254170 + 1 NA Intergenic Intergenic 200536 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 130.5-26 chr12 33748644 33748934 + 1 NA Intergenic Intergenic -273707 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 132.25-69 chr5 6204632 6204806 + 1 NA Intergenic Intergenic 132573 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 217.75-20 chr2 70814298 70814561 + 1 NA intron (NM_001321308, intron 4 of 6) MER5A|DNA|hAT-Charlie 6170 NM_001321308 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 134.25-4 chr1 183296279 183296472 + 1 NA intron (NM_015039, intron 1 of 10) L1MC2|LINE|L1 8499 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 157.25-36 chr2 55299908 55300110 + 1 NA intron (NM_001254943, intron 28 of 33) intron (NM_001254943, intron 28 of 33) 17690 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 168.75-51 chr6 122898317 122898601 + 1 NA Intergenic Intergenic -97776 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 174.25-36 chr2 144960046 144960247 + 1 NA intron (NR_033870, intron 3 of 4) MIR|SINE|MIR 292179 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 150.25-35 chr2 31365571 31365912 + 1 NA intron (NM_000379, intron 22 of 35) intron (NM_000379, intron 22 of 35) 49001 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 181.5-48 chr4 33545619 33545907 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger 494130 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 188.75-30 chr3 141306535 141306857 + 1 NA Intergenic Intergenic -17490 NM_001080412 253461 Hs.518301 NM_152535 ENSG00000177311 ZBTB38 CIBZ|PPP1R171|ZNF921 zinc finger and BTB domain containing 38 protein-coding 290.5-13 chr14 99096726 99097264 + 1 NA Intergenic Intergenic 175202 NM_001282238 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 135.25-35 chr18 7063742 7063949 + 1 NA intron (NM_005559, intron 3 of 62) L1MB3|LINE|L1 53952 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 163.5 chr1 14118452 14118629 + 1 NA Intergenic Intergenic 301433 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 179.5-56 chr2 171144198 171144533 + 1 NA intron (NM_001136554, intron 1 of 20) L1ME3A|LINE|L1 16528 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 229.75 chr1 78627866 78628226 + 1 NA exon (NM_006820, exon 2 of 9) exon (NM_006820, exon 2 of 9) 7598 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 210.5-27 chr18 5446724 5447013 + 1 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 93688 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 215.5-9 chr11 99912209 99912562 + 1 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 356240 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 117.25-16 chr10 102298690 102298996 + 1 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 53311 NM_001199378 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 205.5-59 chr8 78358453 78358758 + 1 NA Intergenic MER63B|DNA|hAT-Blackjack -157735 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 123.5-77 chr4 82098893 82099104 + 1 NA Intergenic Intergenic 274993 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 161.5-29 chr14 32024321 32024634 + 1 NA Intergenic MER41A|LTR|ERV1 52222 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 201.5-53 chr6 105691445 105691783 + 1 NA Intergenic Intergenic -288532 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 134.5-32 chr17 79510497 79510718 + 1 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) 5541 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 128.75-92 chr9 35893483 35893635 + 1 NA Intergenic MER33|DNA|hAT-Charlie -12643 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 174.5-56 chr3 68121922 68122352 + 1 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 117890 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 115.25-39 chr17 54411636 54411822 + 1 NA Intergenic L1PA12|LINE|L1 -488962 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 131.5-70 chr4 172614970 172615104 + 1 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 73880 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 209.75-4 chr11 95056152 95056456 + 1 NA Intergenic L1M5|LINE|L1 -10573 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 112.75-42 chr18 14015138 14015425 + 1 NA Intergenic Intergenic -99574 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 117.25-95 chr8 142643861 142644077 + 1 NA Intergenic MER4-int|LTR|ERV1 5373 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 140.5-99 chr6 105591627 105591894 + 1 NA Intergenic Intergenic -188678 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 230.25-18 chr3 31881188 31881648 + 1 NA intron (NM_001174060, intron 1 of 10) MER119|DNA|hAT-Charlie -100332 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 191.75-5 chr11 8014559 8014959 + 1 NA intron (NR_125366, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR 1750 NR_125366 103581031 Hs.249366 NR_125366 ENSG00000255420 CASC23 LINC01464 cancer susceptibility 23 ncRNA 203.5-50 chr8 127342355 127342652 + 1 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -57896 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 169.5-3 chr1 111530949 111531240 + 1 NA intron (NM_001081976, intron 1 of 5) AluJb|SINE|Alu -10915 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 121.75-57 chr3 23525652 23525822 + 1 NA intron (NM_001370225, intron 4 of 5) Tigger10|DNA|TcMar-Tigger -280218 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 200.5-22 chr15 75824834 75825162 + 1 NA Intergenic Charlie10|DNA|hAT-Charlie -18449 NM_001284382 92912 Hs.23033 NM_173469 ENSG00000140367 UBE2Q2 - ubiquitin conjugating enzyme E2 Q2 protein-coding 194.5-40 chr20 45358262 45358509 + 1 NA Intergenic Intergenic -3564 NM_001197129 90196 Hs.655055 NM_033542 ENSG00000204070 SYS1 C20orf169|dJ453C12.4|dJ453C12.4.1 SYS1 golgi trafficking protein protein-coding 182.75-56 chr8 100173785 100173996 + 1 NA intron (NM_003114, intron 3 of 18) L1MB2|LINE|L1 15555 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 221.5-26 chr20 52366678 52367065 + 1 NA Intergenic Charlie22a|DNA|hAT-Charlie -174886 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 319.5-8 chr2 210802815 210803163 + 1 NA Intergenic Intergenic 185418 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 114.25-108 chr8 102849492 102849629 + 1 NA intron (NM_001363010, intron 2 of 11) intron (NM_001363010, intron 2 of 11) 14603 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 171.25-48 chr6 152103162 152103398 + 1 NA TTS (NM_001291241) TTS (NM_001291241) 65007 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 173.25-24 chr18 4390343 4390569 + 1 NA intron (NM_001242761, intron 1 of 11) L1MC1|LINE|L1 64810 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 196.75-18 chr2 116855635 116855959 + 1 NA Intergenic L1PA13|LINE|L1 -958894 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 236.5-25 chr2 70390024 70390385 + 1 NA Intergenic MIRb|SINE|MIR -88137 NM_001329757 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 163.75-69 chr7 82197466 82197796 + 1 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 188454 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 187.5-36 chr2 84165803 84166086 + 1 NA Intergenic Intergenic -124738 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 192.25-33 chr5 161566599 161566874 + 1 NA Intergenic THE1D|LTR|ERVL-MaLR -18332 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 137.5-68 chr20 14694659 14694829 + 1 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 140360 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 177.5-29 chr19 43941829 43942058 + 1 NA Intergenic L1ME1|LINE|L1 -6661 NM_003425 7596 Hs.381285 NM_003425 ENSG00000124459 ZNF45 KOX5|ZNF13 zinc finger protein 45 protein-coding 201.75-19 chr2 119651042 119651512 + 1 NA intron (NR_073132, intron 23 of 24) MER58A|DNA|hAT-Charlie -27890 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 216.5-31 chr5 29924514 29924979 + 1 NA Intergenic Intergenic 44186 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 240.25-2 chr10 87938763 87939080 + 1 NA intron (NM_001304717, intron 6 of 9) Tigger10|DNA|TcMar-Tigger 75296 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 216.25-24 chr3 18922668 18923021 + 1 NA Intergenic L1MC2|LINE|L1 -225666 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 186.75-9 chr13 32940011 32940287 + 1 NA Intergenic Intergenic -28497 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 245.5-3 chr10 67604479 67604860 + 1 NA intron (NM_001127384, intron 3 of 17) L1PA15|LINE|L1 60991 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 115.75-31 chr16 52640335 52640549 + 1 NA Intergenic Intergenic -33467 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 181.75-14 chr17 60368471 60368763 + 1 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 23516 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 202.75-19 chr4 78378926 78379275 + 1 NA intron (NM_001166133, intron 26 of 41) intron (NM_001166133, intron 26 of 41) 90115 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 184.75-14 chr12 414011 414383 + 1 NA intron (NM_001130148, intron 2 of 10) AluSg|SINE|Alu 12553 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 256.5 chr1 180992109 180992485 + 1 NA intron (NM_005819, intron 4 of 7) intron (NM_005819, intron 4 of 7) 30573 NM_005819 10228 Hs.518417 NM_005819 ENSG00000135823 STX6 - syntaxin 6 protein-coding 195.75-16 chr15 97033215 97033712 + 1 NA Intergenic L1MD1|LINE|L1 250028 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 119.75-3 chr1 182290076 182290258 + 1 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 23894 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 154.75-10 chr11 108287304 108287493 + 1 NA intron (NM_001351834, intron 27 of 63) intron (NM_001351834, intron 27 of 63) 63869 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 142.75-31 chr15 95412167 95412476 + 1 NA Intergenic Intergenic -20772 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 142.5-91 chr8 79686123 79686370 + 1 NA Intergenic L2c|LINE|L2 75129 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 144.5-34 chr13 71344255 71344414 + 1 NA Intergenic Intergenic 329193 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 140.5-109 chr8 81277665 81277836 + 1 NA Intergenic Intergenic -2786 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 247.75-8 chr18 74330649 74330961 + 1 NA intron (NM_001174123, intron 6 of 13) intron (NM_001174123, intron 6 of 13) 14966 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 199.5-23 chr17 66992206 66992508 + 1 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 27650 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 307.75-7 chr4 70396130 70396610 + 1 NA Intergenic MIRb|SINE|MIR -1512 NR_126503 58503 Hs.661425 NM_021225 ENSG00000171199 OPRPN BPLP|PRL1|PROL1|opiorphin opiorphin prepropeptide protein-coding 217.5-43 chr7 104143265 104143631 + 1 NA intron (NM_002553, intron 12 of 13) Plat_L3|LINE|CR1 64565 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 190.5-20 chr12 79680653 79680931 + 1 NA intron (NM_001354732, intron 2 of 6) intron (NM_001354732, intron 2 of 6) 9788 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 141.25-57 chr4 81651487 81651637 + 1 NA Intergenic Intergenic -179655 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 178.5-59 chr5 6358024 6358284 + 1 NA Intergenic Tigger3c|DNA|TcMar-Tigger 20393 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 115.25-45 chr2 31171564 31171767 + 1 NA Intergenic Intergenic -33225 NM_001329095 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 220.5-25 chr2 21382542 21382965 + 1 NA Intergenic Intergenic 258767 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 178.25-55 chr6 89714614 89714981 + 1 NA intron (NM_014611, intron 45 of 101) intron (NM_014611, intron 45 of 101) -76050 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 207.5-47 chr5 63729954 63730261 + 1 NA Intergenic Intergenic 232185 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 213.5-29 chr2 160027289 160027637 + 1 NA intron (NM_001007267, intron 6 of 26) intron (NM_001007267, intron 6 of 26) 35152 NM_001195641 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 183.5-60 chr5 18977207 18977437 + 1 NA Intergenic L1MC3|LINE|L1 908950 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 121.5-54 chr18 48871777 48871993 + 1 NA Intergenic Intergenic 70922 NM_001190823 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 223.5-51 chr3 51824135 51824466 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -2583 NM_001207023 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 148.25-8 chr10 17280057 17280254 + 1 NA Intergenic L1ME3Cz|LINE|L1 -50170 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 186.5-17 chr12 127238087 127238385 + 1 NA Intergenic Intergenic 46047 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 120.5-37 chr15 80749146 80749297 + 1 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) -30149 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 180.5-56 chr3 24387389 24387688 + 1 NA intron (NM_001354709, intron 1 of 10) L2c|LINE|L2 -106549 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 175.5-25 chr14 49661268 49661485 + 1 NA intron (NM_001348385, intron 10 of 18) intron (NM_001348385, intron 10 of 18) -26146 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 152.75-2 chr1 222720528 222720761 + 1 NA intron (NM_001288580, intron 4 of 11) AluSx1|SINE|Alu 7323 NM_001288580 148362 Hs.534965 NM_144695 ENSG00000162819 BROX C1orf58 BRO1 domain and CAAX motif containing protein-coding 154.5-58 chr4 84151041 84151216 + 1 NA intron (NR_125909, intron 5 of 8) MLT1B|LTR|ERVL-MaLR 148041 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 144.25-23 chr15 68732245 68732493 + 1 NA Intergenic Intergenic 69556 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 140.5-82 chr5 67407208 67407396 + 1 NA Intergenic AluJb|SINE|Alu -210503 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 153.5-7 chr1 223074183 223074471 + 1 NA Intergenic AluSx1|SINE|Alu 68921 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 142.5-61 chr4 53593575 53593793 + 1 NA intron (NR_046827, intron 1 of 1) intron (NR_046827, intron 1 of 1) 728 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 122.5-83 chr6 86312166 86312326 + 1 NA Intergenic L1M1|LINE|L1 -625282 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 131.5-5 chr1 198746763 198746978 + 1 NA intron (NM_002838, intron 26 of 32) intron (NM_002838, intron 26 of 32) 107830 NR_052021 5788 Hs.654514 NM_002838 ENSG00000081237 PTPRC B220|CD45|CD45R|GP180|L-CA|LCA|LY5|T200 protein tyrosine phosphatase receptor type C protein-coding 276.75-22 chr9 26084060 26084427 + 1 NA intron (NM_001004352, intron 1 of 6) L2b|LINE|L2 17568 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 195.5-17 chr12 3858382 3858896 + 1 NA intron (NM_020367, intron 1 of 7) Tigger4|DNA|TcMar-Tigger 14760 NM_020367 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 278.5-24 chr5 159553967 159554487 + 1 NA Intergenic Intergenic -87951 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 171.5-57 chr4 72341152 72341501 + 1 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 227895 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 214.5-14 chr15 58648880 58649273 + 1 NA intron (NM_001320570, intron 5 of 14) L1MEg|LINE|L1 44531 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 259.25-11 chr8 90437507 90438037 + 1 NA Intergenic Intergenic 168291 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 147.25-12 chr13 113492401 113492580 + 1 NA intron (NR_146222, intron 1 of 11) L1MD2|LINE|L1 1469 NM_001349741 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 134.5-35 chr18 8133637 8133848 + 1 NA intron (NM_002845, intron 13 of 30) L2c|LINE|L2 233292 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 158.75-13 chr12 12941271 12941557 + 1 NA intron (NM_018654, intron 2 of 2) intron (NM_018654, intron 2 of 2) 8970 NM_018654 55507 Hs.644599 NM_018654 ENSG00000111291 GPRC5D - G protein-coupled receptor class C group 5 member D protein-coding 191.25-61 chr8 122572073 122572339 + 1 NA Intergenic MIR|SINE|MIR -3562 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 119.5-115 chr7 43873496 43873682 + 1 NA intron (NM_001204871, intron 4 of 6) intron (NM_001204871, intron 4 of 6) -4072 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 119.5-51 chr17 30051709 30051879 + 1 NA intron (NR_026738, intron 9 of 15) AluJb|SINE|Alu -65013 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 194.25-37 chr3 119159983 119160459 + 1 NA Intergenic Intergenic -13377 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 143.25-76 chr8 136303952 136304116 + 1 NA Intergenic Intergenic -226764 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 175.5-50 chr3 3637798 3638141 + 1 NA Intergenic Intergenic -161462 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 177.5-7 chr10 25607744 25608066 + 1 NA Intergenic Intergenic -43807 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 165.5-30 chr14 55712030 55712285 + 1 NA Intergenic MSTD|LTR|ERVL-MaLR -54088 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 122.5-33 chr15 53660933 53661168 + 1 NA intron (NM_182758, intron 14 of 19) MER58A|DNA|hAT-Charlie 98613 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 218.5-51 chr7 122975968 122976259 + 1 NA Intergenic Intergenic 19587 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 158.75-16 chr13 23154654 23154888 + 1 NA Intergenic L1M4b|LINE|L1 -26150 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 146.25-43 chr2 219322114 219322280 + 1 NA Intergenic AluJr4|SINE|Alu 10980 NM_001007089 389075 Hs.290551 NM_001007089 ENSG00000182698 RESP18 - regulated endocrine specific protein 18 protein-coding 204.5-29 chr2 77875232 77875647 + 1 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -40495 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 140.25-56 chr3 89904563 89904800 + 1 NA Intergenic L2a|LINE|L2 797060 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 193.25-36 chr5 98430665 98430899 + 1 NA Intergenic MIR3|SINE|MIR -269543 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 149.25-30 chr18 12838134 12838334 + 1 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) 2728 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 154.75-49 chr4 172198471 172198820 + 1 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -385038 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 123.25-65 chr5 39255167 39255329 + 1 NA intron (NM_001243093, intron 1 of 18) intron (NM_001243093, intron 1 of 18) 15401 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 167.25-12 chr10 18598136 18598514 + 1 NA intron (NM_182543, intron 6 of 10) LTR7B|LTR|ERV1 53262 NM_001351118 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 127.75-24 chr12 113756246 113756549 + 1 NA intron (NR_110025, intron 1 of 1) SVA_B|Retroposon|SVA 17286 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 126.5-50 chr2 110165555 110165749 + 1 NA intron (NM_207181, intron 6 of 19) L1M5|LINE|L1 39361 NM_000272 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 213.75-39 chr6 65226729 65226957 + 1 NA intron (NM_001292009, intron 12 of 43) L1MB5|LINE|L1 -74575 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 113.25-96 chr5 93091401 93091583 + 1 NA Intergenic Intergenic 479851 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 170.25-52 chr4 129325006 129325181 + 1 NA Intergenic L2c|LINE|L2 228941 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 156.5-7 chr10 55735227 55735629 + 1 NA Intergenic Intergenic -107486 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 122.75-19 chr12 40921000 40921122 + 1 NA intron (NM_001256064, intron 4 of 15) L3|LINE|CR1 12704 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 243.25 chr1 180776695 180777100 + 1 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) -136000 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 229.75-29 chr6 161956064 161956383 + 1 NA intron (NM_004562, intron 6 of 11) MIR|SINE|MIR 485246 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 189.75-15 chr17 42836418 42836655 + 1 NA intron (NR_049772, intron 4 of 9) intron (NR_049772, intron 4 of 9) 3139 NM_001330229 10197 Hs.152978 NM_005789 ENSG00000131467 PSME3 HEL-S-283|Ki|PA28-gamma|PA28G|PA28gamma|REG-GAMMA proteasome activator subunit 3 protein-coding 180.25-35 chr21 20056736 20056984 + 1 NA Intergenic L1MB8|LINE|L1 -157105 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 140.75-43 chr3 147811100 147811349 + 1 NA Intergenic Intergenic -266935 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 134.5-2 chr1 54434579 54434811 + 1 NA Intergenic Intergenic -28301 NM_145716 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 247.25-8 chr16 26480543 26480889 + 1 NA Intergenic L1MB3|LINE|L1 455479 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 120.25-72 chr8 70269477 70269661 + 1 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 133821 NM_001321712 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 121.75 chr1 70149114 70149323 + 1 NA intron (NM_017768, intron 13 of 14) intron (NM_017768, intron 13 of 14) 56361 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 164.75-6 chr1 207455415 207455697 + 1 NA intron (NM_001006658, intron 1 of 19) intron (NM_001006658, intron 1 of 19) 1228 NM_001877 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 223.25-37 chr9 134028365 134028742 + 1 NA 3' UTR (NM_001355256, exon 3 of 3) 3' UTR (NM_001355256, exon 3 of 3) 3072 NM_001355256 266655 Hs.654869 NM_001355256 ENSG00000235106 BRD3OS LINC00094|LP2477|NCRNA00094 BRD3 opposite strand protein-coding 327.75-6 chr16 74088441 74088972 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 126815 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 135.5-78 chr4 45037563 45037817 + 1 NA Intergenic L1MC5|LINE|L1 -311056 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 220.75-25 chr5 90843276 90843540 + 1 NA intron (NR_003149, intron 78 of 89) L1M5|LINE|L1 284611 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 180.25-9 chr10 116112344 116112597 + 1 NA intron (NM_145793, intron 4 of 8) intron (NM_145793, intron 4 of 8) 82319 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 142.25-37 chr2 154881719 154882027 + 1 NA Intergenic L1PA15|LINE|L1 183178 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 141.75-6 chr10 22005817 22006143 + 1 NA Intergenic L1MEg|LINE|L1 -2250 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 166.5-26 chr12 82988074 82988362 + 1 NA intron (NM_152588, intron 8 of 11) HAL1|LINE|L1 301063 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 204.75-50 chr9 37634897 37635262 + 1 NA intron (NM_001371224, intron 2 of 16) HAL1|LINE|L1 -15875 NM_014907 22844 Hs.163990 NM_014907 ENSG00000070601 FRMPD1 FRMD2 FERM and PDZ domain containing 1 protein-coding 181.5-45 chr3 104908934 104909149 + 1 NA Intergenic Intergenic -457672 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 305.25-4 chr15 69506239 69506779 + 1 NA Intergenic Intergenic 53691 NM_001003 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 228.5-27 chr3 30044422 30044663 + 1 NA Intergenic Intergenic -110386 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 170.5-89 chr9 99070901 99071109 + 1 NA TTS (NM_001855) TTS (NM_001855) -34108 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 168.5-72 chr8 56974815 56975025 + 1 NA intron (NM_017813, intron 3 of 4) MIR3|SINE|MIR 18947 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 115.75-22 chr14 58010046 58010218 + 1 NA intron (NM_001001872, intron 6 of 7) intron (NM_001001872, intron 6 of 7) 142081 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 156.75-17 chr11 91509909 91510161 + 1 NA Intergenic Intergenic -640833 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 170.5-17 chr11 27957952 27958285 + 1 NA Intergenic MIRb|SINE|MIR -98697 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 172.25-47 chr3 71807751 71807986 + 1 NA Intergenic MIR|SINE|MIR -22720 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 197.5-30 chr2 59716001 59716301 + 1 NA Intergenic MIRc|SINE|MIR 498443 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 181.5-42 chr22 33968104 33968322 + 1 NA Intergenic MER57F|LTR|ERV1 -45325 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 137.75-59 chr3 158846797 158846934 + 1 NA Intergenic Intergenic 44811 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 124.5-78 chr4 60777998 60778182 + 1 NA Intergenic Intergenic -144529 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 149.5-93 chr6 49901308 49901526 + 1 NA Intergenic Tigger2a|DNA|TcMar-Tigger -24321 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 167.5-21 chr14 53190068 53190360 + 1 NA Intergenic FLAM_C|SINE|Alu 36860 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 117.5-49 chr2 45045343 45045482 + 1 NA Intergenic Intergenic -35960 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 140.5-54 chr2 234638829 234639048 + 1 NA Intergenic Intergenic -43730 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 143.5-39 chr17 66139523 66139697 + 1 NA intron (NM_001353129, intron 4 of 26) AluJo|SINE|Alu 52282 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 151.75-85 chrX 130996442 130996601 + 1 NA Intergenic MIR|SINE|MIR 61625 NR_126350 104266960 Hs.573575 NR_126350 ENSG00000228659 LINC01201 TCONS_00017091 long intergenic non-protein coding RNA 1201 ncRNA 179.75-3 chr1 153127678 153127930 + 1 NA Intergenic Intergenic 13689 NR_003062 6702 Hs.2421 NR_003062 SPRR2C - small proline rich protein 2C (pseudogene) pseudo 147.5-40 chr19 56543741 56543985 + 1 NA intron (NM_001308440, intron 2 of 6) intron (NM_001308440, intron 2 of 6) 4915 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 191.5-60 chr6 121074380 121074640 + 1 NA Intergenic AluY|SINE|Alu 259970 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 195.25-19 chr18 2510375 2510777 + 1 NA Intergenic Intergenic 60929 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 159.75-43 chr3 189162179 189162475 + 1 NA Intergenic L2c|LINE|L2 -9644 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 256.5-21 chr2 139514970 139515363 + 1 NA Intergenic Intergenic 617842 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 237.5-16 chr15 75019629 75019962 + 1 NA non-coding (NR_033660, exon 6 of 6) non-coding (NR_033660, exon 6 of 6) -3760 NR_125369 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 287.75-8 chr7 125328613 125329004 + 1 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) -64517 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 199.75-41 chr7 142034639 142034861 + 1 NA exon (NM_001365693, exon 16 of 71) exon (NM_001365693, exon 16 of 71) 38871 NM_004668 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 150.75-28 chr19 49996277 49996510 + 1 NA intron (NM_016440, intron 7 of 14) MER63B|DNA|hAT-Blackjack 26729 NR_145574 400709 Hs.568076 NM_001348364 SIGLEC16 SIGLECP16|Siglec-P16 sialic acid binding Ig like lectin 16 (gene/pseudogene) protein-coding 214.75-28 chr4 102333190 102333473 + 1 NA intron (NM_022154, intron 1 of 7) MIRb|SINE|MIR -9019 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 179.5-80 chr6 42032879 42033115 + 1 NA intron (NM_001287434, intron 1 of 4) intron (NM_001287434, intron 1 of 4) 15897 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 114.5-22 chr15 70476368 70476587 + 1 NA Intergenic Intergenic 29451 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 209.75-28 chr4 93405379 93405758 + 1 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -423185 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 178.5-32 chr2 172280569 172280834 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -146635 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 231.75-28 chr6 106651970 106652265 + 1 NA intron (NM_018292, intron 5 of 10) L1ME4a|LINE|L1 -21626 NM_001318746 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 223.75-8 chr15 69447623 69448042 + 1 NA non-coding (NR_160296, exon 23 of 23) non-coding (NR_160296, exon 23 of 23) -4986 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 277.25-26 chr6 70302969 70303324 + 1 NA promoter-TSS (NM_001851) promoter-TSS (NM_001851) -62 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 191.5-8 chr10 96696834 96697048 + 1 NA intron (NM_152309, intron 2 of 16) MER124|DNA?|DNA? 23573 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 186.75-61 chr8 47770508 47770823 + 1 NA Intergenic L1M4|LINE|L1 -32501 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 172.5-23 chr18 5882162 5882541 + 1 NA Intergenic Intergenic 13603 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 125.5-28 chr11 105926321 105926495 + 1 NA intron (NR_046356, intron 11 of 16) MER104|DNA|TcMar-Tc2 95832 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 176.25-17 chr13 97020233 97020430 + 1 NA Intergenic L2b|LINE|L2 -25601 NM_001346195 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 188.5-36 chr3 1088037 1088367 + 1 NA Intergenic MIR|SINE|MIR -4822 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 127.5-91 chr4 110454543 110454755 + 1 NA Intergenic Intergenic -21506 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 195.5-90 chr8 128072260 128072513 + 1 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 23234 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 148.5-2 chr1 155931777 155932034 + 1 NA intron (NM_014949, intron 2 of 13) intron (NM_014949, intron 2 of 13) 2508 NM_014949 22889 Hs.24656 NM_014949 ENSG00000132680 KHDC4 BLOM7|KIAA0907|SNORA80EHG KH domain containing 4, pre-mRNA splicing factor protein-coding 159.5-51 chr20 49844183 49844434 + 1 NA intron (NR_048538, intron 4 of 13) intron (NR_048538, intron 4 of 13) -19551 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 175.5-26 chr14 77304318 77304602 + 1 NA intron (NM_013382, intron 4 of 20) Tigger19a|DNA|TcMar-Tigger 16422 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 153.5-74 chr4 138292590 138292768 + 1 NA Intergenic Intergenic -17032 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 157.5-17 chr12 28843887 28844084 + 1 NA Intergenic L1M4|LINE|L1 -305293 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 204.5-17 chr14 62156070 62156701 + 1 NA Intergenic L1M6|LINE|L1 -16412 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 131.5-65 chr4 30154983 30155135 + 1 NA Intergenic Intergenic -565310 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 129.5-60 chr3 39397192 39397376 + 1 NA TTS (NM_017875) TTS (NM_017875) -9436 NM_002295 3921 Hs.449909 NM_002295 ENSG00000168028 RPSA 37LRP|67LR|ICAS|LAMBR|LAMR1|LBP|LBP/p40|LRP|LRP/LR|NEM/1CHD4|SA|lamR|p40 ribosomal protein SA protein-coding 229.5-7 chr1 202010598 202010879 + 1 NA promoter-TSS (NR_146472) promoter-TSS (NR_146472) 151 NM_001114309 1999 Hs.603657 NM_004433 ENSG00000163435 ELF3 EPR-1|ERT|ESE-1|ESX E74 like ETS transcription factor 3 protein-coding 182.5-73 chr8 134121169 134121444 + 1 NA Intergenic MIR|SINE|MIR 234810 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 163.75-17 chr13 48796829 48797226 + 1 NA Intergenic AluSq2|SINE|Alu 143098 NM_001308465 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 267.75-11 chr4 64866661 64867014 + 1 NA Intergenic Intergenic 137663 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 189.25-3 chr1 97128053 97128315 + 1 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 32261 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 117.5-5 chr1 182818782 182819000 + 1 NA intron (NM_001200052, intron 10 of 11) intron (NM_001200052, intron 10 of 11) -20456 NM_001357 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 203.5-23 chr2 142294612 142294869 + 1 NA Intergenic L1MC4a|LINE|L1 -163039 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 204.5-32 chr2 174789113 174789355 + 1 NA Intergenic LTR1A2|LTR|ERV1 -24762 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 157.25-14 chr11 42002245 42002553 + 1 NA intron (NR_135065, intron 9 of 9) intron (NR_135065, intron 9 of 9) 83059 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 121.25-8 chr11 21188397 21188556 + 1 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 518890 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 190.75-10 chr10 67871202 67871440 + 1 NA Intergenic L1MD|LINE|L1 -13335 NM_012238 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 197.25-27 chr14 86319227 86319446 + 1 NA Intergenic L1ME3G|LINE|L1 384658 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 151.5-69 chr5 146462560 146462739 + 1 NA intron (NM_006706, intron 4 of 21) intron (NM_006706, intron 4 of 21) 15316 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 187.75-52 chr8 77590382 77590587 + 1 NA Intergenic Intergenic 139787 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 163.75-6 chr1 115967593 115967786 + 1 NA intron (NR_125970, intron 1 of 4) L1PB1|LINE|L1 -8824 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 163.75-54 chr4 186375020 186375195 + 1 NA intron (NR_033900, intron 1 of 3) L1ME3A|LINE|L1 108918 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 189.5-46 chr4 141922461 141922777 + 1 NA Intergenic LTR106_Mam|LTR|LTR 286036 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 122.5-37 chr17 68684005 68684176 + 1 NA Intergenic Intergenic 55936 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 123.25-43 chr2 35342409 35342661 + 1 NA Intergenic LTR1A2|LTR|ERV1 -128870 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 130.5-81 chr6 121490974 121491168 + 1 NA Intergenic Intergenic 55425 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 214.75-24 chr3 192349022 192349318 + 1 NA intron (NM_004113, intron 3 of 5) intron (NM_004113, intron 3 of 5) 59879 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 203.5-20 chr2 58593376 58593601 + 1 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 72735 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 172.5-86 chr8 81062285 81062523 + 1 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 49664 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 115.25-86 chr6 137396987 137397184 + 1 NA Intergenic Intergenic 97309 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 133.75-33 chr16 78078741 78078995 + 1 NA Intergenic L2c|LINE|L2 -20786 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 187.5-69 chr6 139305278 139305561 + 1 NA Intergenic Intergenic -13421 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 172.75-31 chr5 22939725 22939992 + 1 NA Intergenic L1MCb|LINE|L1 -86514 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 143.25-62 chr5 98575853 98576170 + 1 NA Intergenic Intergenic -192621 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 205.25-13 chr15 60219080 60219397 + 1 NA Intergenic Intergenic 178748 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 205.75-2 chr1 96424318 96424783 + 1 NA Intergenic Intergenic -50425 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 118.25-98 chr7 33140803 33140997 + 1 NA intron (NM_001348044, intron 1 of 18) intron (NM_001348044, intron 1 of 18) 11336 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 326.75-10 chr3 100941091 100941804 + 1 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 52043 NM_001365642 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 193.75-14 chr14 65296466 65296724 + 1 NA Intergenic Intergenic 38588 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 130.5-69 chr5 12231550 12231768 + 1 NA Intergenic Intergenic -327213 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 163.75-9 chr1 219158005 219158222 + 1 NA intron (NR_038845, intron 1 of 4) intron (NR_038845, intron 1 of 4) 15675 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 134.5-9 chr10 34898480 34898704 + 1 NA Intergenic AluSx|SINE|Alu 82824 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 118.5-54 chr19 9977592 9977754 + 1 NA exon (NM_015719, exon 42 of 67) exon (NM_015719, exon 42 of 67) 32831 NM_015719 50509 Hs.235368 NM_015719 ENSG00000080573 COL5A3 - collagen type V alpha 3 chain protein-coding 145.5-51 chr2 156077136 156077375 + 1 NA intron (NR_110250, intron 1 of 3) UCON1|Unknown|Unknown 177676 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 318.5-9 chr19 34850091 34850459 + 1 NA Intergenic Intergenic -17406 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 116.75-71 chr6 97491834 97491965 + 1 NA intron (NR_110757, intron 1 of 4) Kanga2_a|DNA|TcMar-Tc2 186313 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 209.5-55 chr9 132026573 132026886 + 1 NA intron (NM_001253881, intron 2 of 6) L2a|LINE|L2 53138 NM_001253881 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 173.5-16 chr12 115304919 115305187 + 1 NA Intergenic Intergenic -620878 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 157.75-53 chr3 145211442 145211649 + 1 NA Intergenic Intergenic 857640 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 321.5-12 chr8 138032455 138032942 + 1 NA intron (NR_161374, intron 2 of 7) THE1C|LTR|ERVL-MaLR 50847 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 127.5-106 chr6 45392981 45393131 + 1 NA intron (NM_001015051, intron 2 of 7) L1MCb|LINE|L1 -15122 NM_181356 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 131.25-23 chr11 99741239 99741562 + 1 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 185255 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 160.75-24 chr16 35351695 35351924 + 1 NA Intergenic L1MA6|LINE|L1 -11607 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 152.5-110 chrX 76853257 76853496 + 1 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 65984 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 153.75-18 chr12 40501980 40502323 + 1 NA intron (NM_173600, intron 67 of 173) intron (NM_173600, intron 67 of 173) 108757 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 176.5-8 chr10 73009597 73009784 + 1 NA intron (NM_001017962, intron 14 of 14) intron (NM_001017962, intron 14 of 14) -54884 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 158.5-74 chr3 146010626 146010896 + 1 NA Intergenic L1PA13|LINE|L1 58424 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 227.25-21 chr2 63288477 63289022 + 1 NA intron (NR_148704, intron 14 of 18) L1MC4|LINE|L1 149258 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 178.5-76 chr7 71619216 71619561 + 1 NA intron (NM_022479, intron 6 of 10) L1PA16|LINE|L1 -311618 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 172.25-40 chr20 51323613 51323919 + 1 NA Intergenic Intergenic 129211 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 115.5-46 chr2 113732300 113732489 + 1 NA intron (NM_001330316, intron 9 of 14) intron (NM_001330316, intron 9 of 14) -11026 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 137.5-93 chr5 19383147 19383381 + 1 NA Intergenic Intergenic 503008 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 208.25-37 chr6 44767891 44768146 + 1 NA Intergenic Intergenic -216137 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 132.5-93 chr5 131442086 131442276 + 1 NA intron (NM_016340, intron 23 of 27) intron (NM_016340, intron 23 of 27) 178172 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 236.5-51 chr9 71727680 71727935 + 1 NA intron (NM_013390, intron 10 of 23) AluSx1|SINE|Alu 40706 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 179.5-104 chrX 148493102 148493407 + 1 NA Intergenic Intergenic -7363 NM_001169122 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 219.75-23 chr22 25525101 25525418 + 1 NA Intergenic L2a|LINE|L2 -39416 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 204.5-33 chr2 176700740 176701070 + 1 NA Intergenic L1MEf|LINE|L1 63151 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 180.5-71 chr5 97832284 97832548 + 1 NA Intergenic AluJb|SINE|Alu -8342 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 241.5-16 chr2 123429640 123430108 + 1 NA Intergenic L1ME3D|LINE|L1 -356393 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 157.25-35 chr2 52520900 52521172 + 1 NA Intergenic Intergenic 150388 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 195.5-50 chr20 38081717 38082019 + 1 NA intron (NM_021215, intron 6 of 6) L1PA15|LINE|L1 48122 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 249.5-14 chr20 20399478 20399798 + 1 NA intron (NM_020343, intron 38 of 39) intron (NM_020343, intron 38 of 39) 31534 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 146.75-24 chr2 115000461 115000891 + 1 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -63897 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 190.5-62 chr5 130067074 130067302 + 1 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 162723 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 232.5-38 chr5 26570837 26571212 + 1 NA Intergenic Intergenic 467562 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 157.25-10 chr10 108166498 108166779 + 1 NA Intergenic Intergenic -97345 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 148.5-33 chr16 78758345 78758617 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 658827 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 125.5-116 chr7 30604771 30604981 + 1 NA intron (NM_002047, intron 6 of 16) L3|LINE|CR1 9998 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 452.75-2 chr9 86577988 86578583 + 1 NA Intergenic Intergenic -223875 NM_001185074 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 115.5-102 chr9 79341212 79341526 + 1 NA Intergenic MIR3|SINE|MIR -195703 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 139.5-74 chr5 7412887 7413091 + 1 NA intron (NM_020546, intron 1 of 24) intron (NM_020546, intron 1 of 24) 16851 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 132.5-10 chr10 52969146 52969420 + 1 NA Intergenic L1PA16|LINE|L1 -197583 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 195.75-43 chr5 55477782 55478087 + 1 NA intron (NM_003711, intron 1 of 5) AluSc8|SINE|Alu 30992 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 137.5-57 chr2 100816086 100816322 + 1 NA Intergenic Intergenic -3935 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 216.5-25 chr3 157937270 157937539 + 1 NA Intergenic Intergenic 168759 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 190.75-27 chr18 74235497 74235809 + 1 NA Intergenic Intergenic 56310 NM_148923 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5|METAG cytochrome b5 type A protein-coding 113.75-69 chr22 46841919 46842184 + 1 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 68124 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 163.75-36 chr20 19757620 19757991 + 1 NA Intergenic CpG -128716 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 159.75-50 chr5 37585860 37586198 + 1 NA intron (NM_001345998, intron 9 of 17) L2b|LINE|L2 206711 NM_001345999 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 220.5-52 chr9 29159986 29160396 + 1 NA intron (NM_001354574, intron 1 of 5) MER5A|DNA|hAT-Charlie 52108 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 169.75-49 chr5 65002465 65002634 + 1 NA intron (NM_005869, intron 13 of 13) L1M2|LINE|L1 233619 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 217.5-53 chrX 30885158 30885474 + 1 NA intron (NM_152787, intron 1 of 10) Tigger16b|DNA|TcMar-Tigger 3938 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 127.75-13 chr10 70173166 70173418 + 1 NA Intergenic AluSz|SINE|Alu -2778 NM_020150 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 138.5-2 chr1 41252526 41252824 + 1 NA Intergenic L1PA14|LINE|L1 -10369 NM_001172220 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 165.25-9 chr10 99150296 99150714 + 1 NA intron (NM_021828, intron 2 of 11) AluJr|SINE|Alu 85370 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 247.5-28 chr5 13917481 13917925 + 1 NA intron (NM_001369, intron 7 of 78) L2a|LINE|L2 26777 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 278.5-28 chr8 129870461 129870779 + 1 NA intron (NM_001353307, intron 6 of 13) intron (NM_001353307, intron 6 of 13) 69191 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 131.75-36 chr17 63029997 63030241 + 1 NA intron (NM_025185, intron 2 of 25) L4_B_Mam|LINE|RTE-X 63884 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 152.25-39 chr3 97875878 97876058 + 1 NA exon (NM_153605, exon 4 of 22) exon (NM_153605, exon 4 of 22) 53957 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 154.5-41 chr2 76317937 76318144 + 1 NA Intergenic LTR83|LTR|ERVL -607125 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 150.5-62 chr3 188262447 188262642 + 1 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 37139 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 136.25-72 chr7 66260005 66260238 + 1 NA intron (NM_003596, intron 2 of 5) Tigger4b|DNA|TcMar-Tigger 54787 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 125.5-92 chr4 61951266 61951475 + 1 NA intron (NM_001371343, intron 16 of 23) intron (NM_001371343, intron 16 of 23) 210395 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 154.25-35 chr18 73998528 73998724 + 1 NA Intergenic L1MA2|LINE|L1 149208 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 255.75-27 chr9 75336121 75336513 + 1 NA Intergenic Intergenic 247803 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 329.75-7 chr3 99841082 99841707 + 1 NA intron (NM_001282794, intron 2 of 2) intron (NM_001282794, intron 2 of 2) -17529 NR_110821 101929357 Hs.741615 NR_110821 HP09053 - uncharacterized LOC101929357 ncRNA 139.5-29 chr14 62769950 62770267 + 1 NA intron (NM_172375, intron 9 of 9) MamGypsy2-I|LTR|Gypsy 275350 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 133.5-123 chr9 29203513 29203744 + 1 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 8671 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 208.75-30 chr8 125841318 125841622 + 1 NA Intergenic L1PREC2|LINE|L1 109727 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 142.5-9 chr10 19039452 19039832 + 1 NA Intergenic L2c|LINE|L2 -9159 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 144.5-74 chr3 99070835 99071078 + 1 NA Intergenic Tigger4|DNA|TcMar-Tigger -169261 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 135.25-71 chr4 158276604 158276833 + 1 NA Intergenic Intergenic 66232 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 208.5-60 chr5 42314340 42314585 + 1 NA Intergenic L1PA13|LINE|L1 -108977 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 225.75-25 chr8 38514121 38514436 + 1 NA intron (NM_001369354, intron 1 of 1) intron (NM_001369354, intron 1 of 1) 14384 NM_001369354 389649 Hs.546586 NM_207412 ENSG00000196166 C8orf86 - chromosome 8 open reading frame 86 protein-coding 205.25-19 chr2 170844663 170844905 + 1 NA intron (NM_000817, intron 7 of 16) intron (NM_000817, intron 7 of 16) 27897 NM_000817 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 175.5-16 chr12 6539826 6540127 + 1 NA non-coding (NR_036467, exon 10 of 10) non-coding (NR_036467, exon 10 of 10) 4712 NM_001256799 2597 Hs.544577 NM_002046 ENSG00000111640 GAPDH G3PD|GAPD|HEL-S-162eP glyceraldehyde-3-phosphate dehydrogenase protein-coding 162.5-59 chr4 15929354 15929570 + 1 NA Intergenic MER5B|DNA|hAT-Charlie 9278 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 156.25-26 chr17 51920788 51920993 + 1 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 237824 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 141.75-25 chr15 47457362 47457600 + 1 NA intron (NM_001198999, intron 2 of 19) L1MEc|LINE|L1 -260024 NM_001358352 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 211.75-37 chr7 40559744 40560062 + 1 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 420036 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 161.75-2 chr10 4280441 4280759 + 1 NA Intergenic MER39B|LTR|ERV1 -36688 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 139.5-96 chr6 161235073 161235296 + 1 NA intron (NM_020133, intron 1 of 8) MIR|SINE|MIR 38877 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 161.5-25 chr12 22738121 22738368 + 1 NA Intergenic L1ME3Cz|LINE|L1 113073 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 270.5-12 chr18 48111494 48112001 + 1 NA intron (NM_001371291, intron 4 of 6) intron (NM_001371291, intron 4 of 6) 25401 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 227.5-40 chr4 90848750 90849211 + 1 NA intron (NM_001145065, intron 8 of 10) THE1D|LTR|ERVL-MaLR 613949 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 146.75-20 chr17 75161834 75162164 + 1 NA Intergenic AluJo|SINE|Alu -7316 NR_109933 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 137.75-21 chr14 41334769 41335157 + 1 NA Intergenic Intergenic -271893 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 164.5-12 chr11 31887883 31888053 + 1 NA TTS (NR_033971) TTS (NR_033971) 61401 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 116.75-40 chr2 19899442 19899764 + 1 NA intron (NM_001008237, intron 1 of 2) intron (NM_001008237, intron 1 of 2) 2380 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 244.25-16 chr21 27497110 27497363 + 1 NA Intergenic Intergenic -225143 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 133.5-97 chr6 13232244 13232445 + 1 NA intron (NM_001322308, intron 9 of 13) intron (NM_001322308, intron 9 of 13) 51098 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 171.75-56 chr8 18122134 18122399 + 1 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -37305 NM_001127505 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 211.25-39 chr8 133603228 133603559 + 1 NA Intergenic Intergenic -31506 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 207.25-28 chr5 174463574 174463823 + 1 NA intron (NR_125806, intron 2 of 5) L2c|LINE|L2 127344 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 308.5-4 chr12 43761885 43762389 + 1 NA intron (NM_001351339, intron 2 of 13) L1ME4a|LINE|L1 3193 NM_016123 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 160.75-32 chr2 98786019 98786275 + 1 NA Intergenic Intergenic -14249 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 172.75-46 chr8 101485976 101486169 + 1 NA Intergenic Intergenic -6367 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 197.5-18 chr14 62718349 62718582 + 1 NA intron (NM_172375, intron 9 of 9) L1MB7|LINE|L1 326993 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 219.75-21 chr21 29498733 29499162 + 1 NA intron (NR_146594, intron 1 of 1) intron (NR_146594, intron 1 of 1) 2900 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 156.75-55 chr2 239300896 239301123 + 1 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -4453 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 130.5-108 chr9 36417396 36417664 + 1 NA Intergenic AluSz|SINE|Alu -16332 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 151.75-76 chr8 97068208 97068379 + 1 NA intron (NM_016134, intron 7 of 7) intron (NM_016134, intron 7 of 7) 209635 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 171.75-64 chr9 71307202 71307540 + 1 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 139600 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 236.25-40 chr7 113283780 113284054 + 1 NA Intergenic L2b|LINE|L2 -165335 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 220.5-9 chr10 101881118 101881450 + 1 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -37364 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 184.75-47 chr5 13218909 13219144 + 1 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -186140 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 155.75-32 chr21 36512195 36512433 + 1 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 30470 NM_001146078 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 215.5-19 chr15 63687766 63688094 + 1 NA intron (NM_003922, intron 33 of 77) L2a|LINE|L2 -87103 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 118.25-32 chr15 35564086 35564287 + 1 NA intron (NR_038251, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 17991 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 135.5-112 chr9 30697110 30697250 + 1 NA Intergenic L1MA9|LINE|L1 -288726 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 160.75-51 chr5 93568092 93568425 + 1 NA intron (NR_021490, intron 1 of 5) intron (NR_021490, intron 1 of 5) 3085 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 123.5-116 chr9 103850175 103850421 + 1 NA Intergenic L1M5|LINE|L1 -149411 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 137.25-78 chr8 122345460 122345620 + 1 NA Intergenic L1MB2|LINE|L1 223104 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 115.5-27 chr12 124644396 124644543 + 1 NA Intergenic L1ME3|LINE|L1 -76857 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 122.5-32 chr15 51771828 51772164 + 1 NA intron (NM_001142885, intron 3 of 8) intron (NM_001142885, intron 3 of 8) 20399 NM_001142885 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 135.5-9 chr10 62850817 62851060 + 1 NA Intergenic Intergenic -31771 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 131.25-49 chr2 235521838 235522075 + 1 NA intron (NM_001037131, intron 1 of 17) L1MC5|LINE|L1 -4035 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 135.25-4 chr1 205165576 205165715 + 1 NA intron (NM_199462, intron 3 of 11) L1ME4b|LINE|L1 -43667 NM_005057 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 160.5-77 chr8 112241272 112241558 + 1 NA intron (NM_001363185, intron 62 of 66) intron (NM_001363185, intron 62 of 66) -402078 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 169.5-40 chr2 44550521 44550882 + 1 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 188754 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 273.25-10 chr22 27190446 27190811 + 1 NA Intergenic AluSx|SINE|Alu 3112 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 260.5-2 chr10 58648448 58648934 + 1 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -66324 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 126.5-71 chr3 76241109 76241440 + 1 NA Intergenic Intergenic -455725 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 115.25-14 chr10 105734066 105734219 + 1 NA intron (NR_120625, intron 3 of 3) LTR23|LTR|ERV1 86191 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 127.5-120 chr7 89040719 89040950 + 1 NA intron (NM_181646, intron 1 of 3) L1MA9|LINE|L1 -245097 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 120.25-51 chr4 33045344 33045539 + 1 NA Intergenic Intergenic 694403 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 117.5-11 chr10 82357302 82357461 + 1 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -124461 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 175.5-7 chr1 183187459 183187777 + 1 NA intron (NM_005562, intron 1 of 22) L1MA9|LINE|L1 1354 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 117.75-31 chr17 47964947 47965123 + 1 NA Intergenic Intergenic -5493 NM_001278197 80279 Hs.20157 NM_025197 ENSG00000108465 CDK5RAP3 C53|HSF-27|IC53|LZAP|MST016|OK/SW-cl.114|PP1553 CDK5 regulatory subunit associated protein 3 protein-coding 327.25-6 chr4 128794279 128794951 + 1 NA Intergenic Intergenic -15085 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 152.75-32 chr2 121180567 121180795 + 1 NA Intergenic L1M8|LINE|L1 104521 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 173.25-57 chr6 3234675 3234875 + 1 NA intron (NR_147505, intron 1 of 1) intron (NR_147505, intron 1 of 1) 3372 NR_147505 100422781 Hs.664539 NR_147505 LOC100422781 - uncharacterized LOC100422781 ncRNA 160.5-16 chr13 112045200 112045430 + 1 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -21834 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 223.5-2 chr1 20219127 20219383 + 1 NA Intergenic L1ME4a|LINE|L1 -23840 NR_147205 105376827 Hs.559701 NR_147205 ENSG00000228105 LINC01757 - long intergenic non-protein coding RNA 1757 ncRNA 193.25-47 chr8 113977715 113978047 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -540942 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 162.5-37 chr19 28162811 28163032 + 1 NA Intergenic L1MA8|LINE|L1 -368981 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 131.25-70 chr5 33132179 33132442 + 1 NA Intergenic THE1B-int|LTR|ERVL-MaLR -97425 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 233.25-18 chr2 30445283 30445728 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -1741 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 135.5-18 chr11 95132425 95132662 + 1 NA 3' UTR (NM_015036, exon 2 of 2) 3' UTR (NM_015036, exon 2 of 2) -17996 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 175.75-41 chr5 85020590 85020842 + 1 NA Intergenic L1PA13|LINE|L1 -635836 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 155.5-78 chr5 32639229 32639422 + 1 NA Intergenic MamTip3|DNA|hAT-Tip100 -51547 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 144.5-105 chr8 112792271 112792481 + 1 NA intron (NM_001363185, intron 11 of 66) MLT1A|LTR|ERVL-MaLR 148883 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 141.5-90 chr5 28041622 28041858 + 1 NA Intergenic L2|LINE|L2 245925 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 158.25-3 chr1 80293220 80293662 + 1 NA Intergenic Intergenic -242314 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 139.5-48 chr2 194286825 194287046 + 1 NA Intergenic LTR105_Mam|LTR|ERVL -57334 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 251.5-2 chr1 235980027 235980337 + 1 NA intron (NM_002508, intron 17 of 19) intron (NM_002508, intron 17 of 19) 84908 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 149.25-5 chr1 206825215 206825544 + 1 NA intron (NM_153758, intron 2 of 6) intron (NM_153758, intron 2 of 6) -3498 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 160.75-3 chr1 163086736 163086920 + 1 NA Intergenic Intergenic 14923 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 210.25-29 chr22 26861366 26861660 + 1 NA intron (NR_146604, intron 2 of 5) AluSq2|SINE|Alu 1302 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 156.75-33 chr14 69992141 69992386 + 1 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 14130 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 167.25-57 chr4 176039464 176039693 + 1 NA Intergenic L1PA13|LINE|L1 -26263 NM_181265 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 136.75-75 chr5 2231822 2231992 + 1 NA Intergenic L1MEd|LINE|L1 80294 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 145.25-55 chr4 59125038 59125342 + 1 NA Intergenic Intergenic 111617 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 377.5-3 chr2 64135473 64135920 + 1 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 8724 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 128.5-85 chr6 54322805 54322971 + 1 NA intron (NM_014464, intron 3 of 10) intron (NM_014464, intron 3 of 10) 14447 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 126.5-40 chr16 87133801 87133939 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 76086 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 281.75-21 chr9 99728791 99729268 + 1 NA intron (NR_109802, intron 2 of 6) L3|LINE|CR1 90860 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 140.75-9 chr11 44356056 44356291 + 1 NA Intergenic MamTip2|DNA|hAT-Tip100 -46034 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 205.25-36 chr5 124798932 124799251 + 1 NA Intergenic Intergenic -53979 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 159.25-50 chr3 67259381 67259574 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR 34013 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 234.5-40 chr7 96588388 96588800 + 1 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 75744 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 128.75-35 chr18 68301147 68301337 + 1 NA Intergenic Intergenic 413866 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 186.5-6 chr1 205194822 205195191 + 1 NA intron (NM_199462, intron 1 of 11) AluSx|SINE|Alu 16696 NM_199462 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 172.25-26 chr16 65001335 65001667 + 1 NA intron (NM_001330576, intron 2 of 11) intron (NM_001330576, intron 2 of 11) 120562 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 115.75-21 chr14 45531618 45531754 + 1 NA Intergenic L1MA9|LINE|L1 183916 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 185.5-14 chr11 18622173 18622464 + 1 NA intron (NM_194285, intron 1 of 5) AluJo|SINE|Alu 12024 NM_194285 144108 Hs.738650 NM_194285 ENSG00000179119 SPTY2D1 Spt2 SPT2 chromatin protein domain containing 1 protein-coding 282.5-21 chr8 140433305 140433800 + 1 NA intron (NM_001160372, intron 4 of 22) AluSx1|SINE|Alu 24192 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 128.25 chr1 14709178 14709442 + 1 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 110593 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 168.75-32 chr21 30865640 30865940 + 1 NA Intergenic Intergenic 15790 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 182.5-29 chr2 43576276 43576658 + 1 NA intron (NM_001083953, intron 10 of 37) MIRc|SINE|MIR 19507 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 211.75-29 chr5 9164992 9165256 + 1 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -111229 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 239.5-23 chr5 36407990 36408244 + 1 NA Intergenic L1MA2|LINE|L1 -106215 NM_001323275 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 155.75-44 chr4 55037319 55037516 + 1 NA Intergenic Intergenic 88178 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 123.75-107 chr9 105552200 105552371 + 1 NA 3' UTR (NM_001145313, exon 14 of 14) 3' UTR (NM_001145313, exon 14 of 14) -5845 NM_001079802 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 121.75-12 chr11 60634314 60634552 + 1 NA intron (NR_026946, intron 3 of 6) L1PB4|LINE|L1 18682 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 142.75-55 chr3 99577875 99578148 + 1 NA Intergenic Intergenic -60583 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 149.5-106 chr8 85259268 85259516 + 1 NA intron (NM_198584, intron 2 of 6) intron (NM_198584, intron 2 of 6) 13934 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 120.25-34 chr2 57643318 57643572 + 1 NA Intergenic Intergenic -264206 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 205.75-32 chr5 68652173 68652505 + 1 NA Intergenic Intergenic 359762 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 128.25-34 chr2 101103181 101103378 + 1 NA intron (NM_001102426, intron 1 of 19) L1MC3|LINE|L1 48168 NM_001102426 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 166.5-85 chr5 88523788 88524142 + 1 NA Intergenic Intergenic -84875 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 137.5-54 chr2 75731589 75731793 + 1 NA Intergenic Intergenic -20776 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 132.75-62 chr3 62276640 62276846 + 1 NA intron (NM_002841, intron 24 of 29) intron (NM_002841, intron 24 of 29) 42204 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 293.75-7 chr2 108820823 108821237 + 1 NA intron (NM_001351559, intron 10 of 11) L1M4|LINE|L1 34259 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 194.75-3 chr10 62892384 62892676 + 1 NA Intergenic Intergenic -73363 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 121.75-46 chr2 189770096 189770393 + 1 NA TTS (NM_001128150) TTS (NM_001128150) -7046 NR_148883 64172 Hs.60772 NM_022353 ENSG00000128694 OSGEPL1 OSGEPL|Qri7 O-sialoglycoprotein endopeptidase like 1 protein-coding 228.75-41 chr8 136518900 136519343 + 1 NA Intergenic L1MCc|LINE|L1 -11677 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 223.5-39 chr2 164129829 164130155 + 1 NA Intergenic Intergenic -393984 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 198.75-5 chr10 114566210 114566657 + 1 NA intron (NM_001352440, intron 4 of 20) intron (NM_001352440, intron 4 of 20) -39520 NM_001352443 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 113.5-40 chr15 47780411 47780524 + 1 NA Intergenic MER41C|LTR|ERV1 61978 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 182.5-47 chr3 195578140 195578358 + 1 NA intron (NM_001647, intron 2 of 4) intron (NM_001647, intron 2 of 4) 5691 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 157.75-47 chr20 25127990 25128173 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL 19912 NR_027093 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 236.25-15 chr2 47366743 47367223 + 1 NA Intergenic Intergenic -2165 NM_002354 4072 Hs.542050 NM_002354 ENSG00000119888 EPCAM DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 epithelial cell adhesion molecule protein-coding 253.5-21 chr19 10712268 10712570 + 1 NA intron (NM_031209, intron 6 of 9) intron (NM_031209, intron 6 of 9) -5634 NM_001005361 1785 Hs.211463 NM_004945 ENSG00000079805 DNM2 CMT2M|CMTDI1|CMTDIB|DI-CMTB|DYN2|DYNII|LCCS5 dynamin 2 protein-coding 139.25-85 chr8 143995452 143995624 + 1 NA Intergenic Intergenic 5480 NM_000837 2907 Hs.594634 NM_000837 ENSG00000178719 GRINA HNRGW|LFG1|NMDARA1|TMBIM3 glutamate ionotropic receptor NMDA type subunit associated protein 1 protein-coding 225.25-33 chr8 89558973 89559234 + 1 NA Intergenic Intergenic 198608 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 233.5-26 chr2 50580455 50580920 + 1 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 115575 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 172.25-44 chr3 22124216 22124431 + 1 NA Intergenic L1MA3|LINE|L1 167184 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 180.5-7 chr10 76361433 76361651 + 1 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -526502 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 156.25-39 chr2 160729705 160729871 + 1 NA Intergenic Intergenic -235981 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 161.25-31 chr19 47225098 47225308 + 1 NA intron (NM_001127242, intron 1 of 1) AluSp|SINE|Alu -1739 NR_036158 100422899 NR_036158 ENSG00000265134 MIR3190 mir-3190 microRNA 3190 ncRNA 114.75-99 chr7 50863805 50864029 + 1 NA Intergenic Intergenic -70464 NM_001371008 172.25-9 chr11 63031156 63031328 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -15397 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 126.75-55 chr22 32478357 32478535 + 1 NA intron (NM_001033024, intron 1 of 8) MER104|DNA|TcMar-Tc2 3209 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 119.25-100 chr8 128439355 128439583 + 1 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 125210 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 181.25-9 chr11 7480676 7480937 + 1 NA Intergenic Intergenic -4700 NM_001370500 283298 Hs.503500 NM_198474 ENSG00000183801 OLFML1 MVAL564|UNQ564 olfactomedin like 1 protein-coding 266.5-3 chr1 229719834 229720211 + 1 NA Intergenic L1MB2|LINE|L1 93775 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 200.25-30 chr22 30943743 30944060 + 1 NA intron (NM_001303257, intron 6 of 25) AluSx4|SINE|Alu 21593 NR_026920 150291 Hs.592202 NM_153044 ENSG00000235989 MORC2-AS1 C22orf27|NCRNA00325 MORC2 antisense RNA 1 ncRNA 158.25-48 chr5 39730944 39731211 + 1 NA Intergenic Intergenic 210646 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 278.5-27 chr8 84926559 84926908 + 1 NA Intergenic Intergenic -180505 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 204.5-10 chr12 51014632 51014963 + 1 NA intron (NM_001174125, intron 1 of 15) AluSx1|SINE|Alu -5582 NM_001174130 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 234.5-30 chr4 34959594 34959925 + 1 NA Intergenic Intergenic -690012 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 193.5 chr1 42766835 42767218 + 1 NA promoter-TSS (NM_024097) promoter-TSS (NM_024097) 58 NM_001146289 64175 Hs.720014 NM_022356 ENSG00000117385 P3H1 GROS1|LEPRE1|OI8 prolyl 3-hydroxylase 1 protein-coding 123.75-28 chr12 27989791 27990049 + 1 NA Intergenic Intergenic -17187 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 170.75-28 chr16 56678049 56678453 + 1 NA TTS (NR_003669) TTS (NR_003669) 2135 NR_003669 644314 Hs.434199 NM_175621 MT1IP MT1|MT1I|MTE metallothionein 1I, pseudogene pseudo 164.75-25 chr15 62436796 62436968 + 1 NA Intergenic AluJr|SINE|Alu 93853 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 149.25-13 chr11 90788472 90788658 + 1 NA intron (NR_104190, intron 3 of 6) L1M4|LINE|L1 80637 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 118.25-99 chr7 43313543 43313709 + 1 NA intron (NM_001287059, intron 3 of 27) AluSp|SINE|Alu 162731 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 278.25-8 chr14 65900148 65900471 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 429207 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 151.5-41 chr2 213386768 213386932 + 1 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 102386 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 176.25-49 chr3 188996470 188996719 + 1 NA Intergenic HAL1|LINE|L1 -48955 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 191.5-34 chr2 172282776 172283068 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -144414 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 213.25-14 chr16 54401244 54401622 + 1 NA Intergenic MIRb|SINE|MIR -30734 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 182.25-28 chr2 214303621 214303831 + 1 NA intron (NR_047660, intron 14 of 14) L1PB4|LINE|L1 -107328 NM_001080500 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 173.5-15 chr12 47631084 47631359 + 1 NA Intergenic L2a|LINE|L2 74809 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 146.5-41 chr18 71301943 71302225 + 1 NA Intergenic Intergenic 276872 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 162.75-47 chr3 143881460 143881717 + 1 NA Intergenic Intergenic -33120 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 239.5-16 chr3 106087817 106088217 + 1 NA Intergenic Tigger17a|DNA|TcMar-Tigger -218616 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 137.25-9 chr10 7501382 7501721 + 1 NA Intergenic Intergenic -90065 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 223.5-68 chr6 62485526 62485958 + 1 NA Intergenic Intergenic -199515 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 119.5-55 chr2 8946607 8946847 + 1 NA intron (NR_135600, intron 1 of 12) Tigger1|DNA|TcMar-Tigger 56957 NR_135600 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 144.75-51 chr22 26605953 26606370 + 1 NA intron (NM_001887, intron 4 of 5) MER5B|DNA|hAT-Charlie 11866 NM_001887 1414 Hs.37135 NM_001887 ENSG00000100122 CRYBB1 CATCN3|CTRCT17 crystallin beta B1 protein-coding 270.25-6 chr18 6427546 6427922 + 1 NA Intergenic Intergenic -12475 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 118.5-55 chr19 38273141 38273291 + 1 NA intron (NM_001166103, intron 1 of 5) intron (NM_001166103, intron 1 of 5) 8643 NM_021102 10653 Hs.31439 NM_021102 ENSG00000167642 SPINT2 DIAR3|HAI-2|HAI2|Kop|PB serine peptidase inhibitor, Kunitz type 2 protein-coding 180.5-93 chr8 136509804 136510125 + 1 NA Intergenic Intergenic -20834 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 163.25-58 chr5 66047724 66048073 + 1 NA intron (NM_001253697, intron 18 of 25) intron (NM_001253697, intron 18 of 25) -96402 NM_001323534 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 166.5-92 chr7 10836454 10836733 + 1 NA Intergenic Intergenic -56649 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 171.75-38 chr3 89780215 89780647 + 1 NA Intergenic Intergenic 672810 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 136.75-12 chr10 77728422 77728592 + 1 NA Intergenic Intergenic -90699 NM_001271521 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 217.75-28 chr4 31030242 31030500 + 1 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -140773 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 126.5-89 chr5 56917649 56917878 + 1 NA TTS (NM_153706) TTS (NM_153706) 7701 NR_136557 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 222.5-38 chr5 2603698 2604065 + 1 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -108710 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 194.25-6 chr10 62625199 62625570 + 1 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 104936 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 182.5-43 chr3 96039403 96039689 + 1 NA Intergenic L1MC1|LINE|L1 -320418 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 118.5-67 chr3 4514993 4515187 + 1 NA intron (NM_001168272, intron 2 of 60) intron (NM_001168272, intron 2 of 60) 21742 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 257.5-25 chr5 164717889 164718324 + 1 NA Intergenic Intergenic 247827 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 125.5-43 chr14 54718985 54719188 + 1 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -35747 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 240.25-13 chr2 221003201 221003587 + 1 NA Intergenic Intergenic 568910 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 186.75-64 chr9 94716483 94716851 + 1 NA Intergenic Intergenic -10002 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 182.5-62 chr6 40925017 40925312 + 1 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 98116 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 190.75-40 chr4 144781067 144781430 + 1 NA Intergenic Intergenic 135092 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 167.5-47 chr20 55816696 55816933 + 1 NA Intergenic L1M3|LINE|L1 188705 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 114.5-41 chr18 3991158 3991378 + 1 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 28915 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 226.25-11 chr17 2233102 2233465 + 1 NA non-coding (NR_110888, exon 2 of 2) non-coding (NR_110888, exon 2 of 2) 605 NR_110888 101927839 Hs.665648 NR_110888 ENSG00000225084 LOC101927839 - uncharacterized LOC101927839 ncRNA 167.75-58 chr5 135785049 135785457 + 1 NA intron (NM_001349335, intron 3 of 10) SATR2|Satellite|Satellite 17822 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 128.75-13 chr11 22889933 22890141 + 1 NA Intergenic Intergenic -29563 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 198.5-6 chr10 67355336 67355700 + 1 NA intron (NM_001127384, intron 5 of 17) Charlie7|DNA|hAT-Charlie 47892 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 237.25-28 chr8 58487582 58488107 + 1 NA Intergenic Intergenic 12319 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 126.5-87 chr5 41099507 41099677 + 1 NA Intergenic Intergenic -28250 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 183.75-32 chr2 174570746 174570978 + 1 NA intron (NM_001077269, intron 5 of 7) intron (NM_001077269, intron 5 of 7) -12790 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 162.5-8 chr1 217470058 217470304 + 1 NA intron (NM_018040, intron 8 of 9) LFSINE_Vert|SINE|tRNA 160909 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 134.25-65 chr4 186142726 186142991 + 1 NA intron (NM_001367768, intron 1 of 13) MLT1H1|LTR|ERVL-MaLR -1429 NM_001006655 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 213.5-11 chr12 69573646 69573920 + 1 NA intron (NM_001278354, intron 9 of 9) L1M4|LINE|L1 -10940 NR_037476 100500868 NR_037476 ENSG00000283677 MIR3913-2 mir-3913-2 microRNA 3913-2 ncRNA 173.25-27 chr2 51105560 51105944 + 1 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 73151 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 143.25-12 chr11 45576897 45577133 + 1 NA Intergenic L2c|LINE|L2 88607 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 259.25-2 chr11 30289793 30290086 + 1 NA Intergenic Intergenic -33165 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 148.5-105 chr8 26175509 26175751 + 1 NA Intergenic Intergenic -115878 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 258.25-16 chr3 158293005 158293287 + 1 NA intron (NM_001271838, intron 4 of 9) intron (NM_001271838, intron 4 of 9) 183057 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 175.25-51 chr6 148958089 148958352 + 1 NA intron (NR_038408, intron 2 of 2) intron (NR_038408, intron 2 of 2) 6464 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 213.25 chr1 96973838 96974266 + 1 NA Intergenic LTR81|LTR|Gypsy -121871 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 260.75-20 chr7 36324304 36324673 + 1 NA 3' UTR (NM_001100425, exon 7 of 7) 3' UTR (NM_001100425, exon 7 of 7) 42752 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 128.25-17 chr11 33050415 33050687 + 1 NA intron (NM_001145541, intron 2 of 9) AluYa5|SINE|Alu 10536 NM_001145541 55346 Hs.655341 NM_018393 ENSG00000176148 TCP11L1 dJ85M6.3 t-complex 11 like 1 protein-coding 113.5-22 chr11 85570966 85571181 + 1 NA intron (NM_001142699, intron 3 of 27) L1MB7|LINE|L1 56197 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 117.5-53 chr2 159907610 159907896 + 1 NA Intergenic Intergenic -2997 NM_002349 4065 Hs.153563 NM_002349 ENSG00000054219 LY75 CD205|CLEC13B|DEC-205|GP200-MR6|LY-75 lymphocyte antigen 75 protein-coding 126.5-124 chrX 45683308 45683541 + 1 NA Intergenic Intergenic -47664 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 264.75-11 chr2 79940955 79941438 + 1 NA intron (NM_001282598, intron 7 of 17) MamRTE1|LINE|RTE-BovB -74613 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 123.25-2 chr1 71577139 71577386 + 1 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 259750 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 165.5-6 chr10 7672625 7672882 + 1 NA Intergenic L1ME4b|LINE|L1 -5755 NM_001001851 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 143.75-51 chr2 188993592 188993914 + 1 NA intron (NM_000090, intron 16 of 50) intron (NM_000090, intron 16 of 50) -1877 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 233.75-36 chr8 127667844 127668386 + 1 NA Intergenic L2b|LINE|L2 65852 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 246.25-14 chr2 69060006 69060664 + 1 NA intron (NM_032208, intron 3 of 17) MIRb|SINE|MIR -43347 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 163.25-14 chr11 92008797 92008979 + 1 NA Intergenic L1PBa|LINE|L1 -216146 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 294.25-8 chr2 65333153 65333469 + 1 NA intron (NM_001128210, intron 3 of 5) intron (NM_001128210, intron 3 of 5) 33467 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 193.75-35 chr3 76071801 76072184 + 1 NA Intergenic Intergenic -286443 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 185.75-31 chr2 163931643 163931949 + 1 NA Intergenic L3|LINE|CR1 -195788 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 131.5-99 chr8 127273473 127273627 + 1 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 28913 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 218.75 chr1 46112633 46112916 + 1 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 17899 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 182.5-25 chr17 74650356 74650595 + 1 NA Intergenic Intergenic -20656 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 161.75-42 chr5 51556839 51557188 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 173565 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 135.25-73 chr5 37802839 37803131 + 1 NA Intergenic AluSx1|SINE|Alu 31837 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 147.5-29 chr15 53710525 53710771 + 1 NA intron (NM_182758, intron 9 of 19) intron (NM_182758, intron 9 of 19) 49015 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 194.75-50 chr8 134523992 134524275 + 1 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -73938 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 198.25-44 chr7 91516930 91517228 + 1 NA Intergenic Intergenic 252646 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 146.5-84 chr7 42433731 42433877 + 1 NA Intergenic Intergenic -196595 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 190.25-54 chrX 100194856 100195288 + 1 NA Intergenic Intergenic 215201 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 134.25-100 chrX 96443716 96444120 + 1 NA Intergenic Intergenic -106016 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 154.75-28 chr2 88490565 88490802 + 1 NA Intergenic Intergenic -33966 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 135.5-82 chr5 17000424 17000656 + 1 NA Intergenic Intergenic -64252 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 205.75-25 chr2 231522148 231522456 + 1 NA TTS (NM_006056) TTS (NM_006056) -7963 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 117.5-90 chr7 81203474 81203685 + 1 NA Intergenic Intergenic -281190 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 115.75-9 chr10 42797387 42797609 + 1 NA exon (NM_014753, exon 11 of 23) exon (NM_014753, exon 11 of 23) 14703 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 118.25-41 chr18 3790522 3790739 + 1 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 54728 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 148.25-45 chr21 16942657 16942939 + 1 NA Intergenic L1MA4|LINE|L1 352561 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 128.25-10 chr10 18798454 18798594 + 1 NA Intergenic L1PA16|LINE|L1 139093 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 121.5-53 chr18 38083090 38083227 + 1 NA Intergenic MIRb|SINE|MIR 426023 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 206.5-25 chr2 47907536 47907986 + 1 NA Intergenic Intergenic -1968 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 274.75-13 chr21 20079355 20079787 + 1 NA Intergenic Intergenic 179114 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 127.25-58 chr22 39315576 39315767 + 1 NA promoter-TSS (NR_000027) promoter-TSS (NR_000027) -364 NR_000027 116937 NR_000027 ENSG00000209482 SNORD83A RNU83A|U83A small nucleolar RNA, C/D box 83A snoRNA 135.5-81 chr5 3274025 3274199 + 1 NA Intergenic Intergenic 96277 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 165.75-18 chr12 88197333 88197520 + 1 NA non-coding (NR_159381, exon 15 of 15) non-coding (NR_159381, exon 15 of 15) 55119 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 275.5-23 chr4 172643790 172644332 + 1 NA intron (NR_125894, intron 2 of 2) L1ME3A|LINE|L1 44856 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 195.5-74 chr5 123190475 123191014 + 1 NA 3' UTR (NM_001136239, exon 8 of 8) 3' UTR (NM_001136239, exon 8 of 8) -100428 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 161.25-52 chr3 93858420 93858668 + 1 NA Intergenic Intergenic 115537 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 116.75-70 chr6 93563231 93563365 + 1 NA Intergenic Intergenic -140719 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 132.75-15 chr10 12758214 12758356 + 1 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -32932 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 157.5-4 chr1 102424205 102424443 + 1 NA Intergenic MIRb|SINE|MIR -427090 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 135.5-6 chr1 236307703 236307921 + 1 NA Intergenic Intergenic -25854 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 275.5-4 chr11 4735828 4736364 + 1 NA Intergenic Intergenic 33842 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 209.75-22 chr2 207730366 207730820 + 1 NA intron (NM_001142300, intron 3 of 7) AluSz|SINE|Alu 19053 NM_152523 151195 Hs.471234 NM_152523 ENSG00000163249 CCNYL1 - cyclin Y like 1 protein-coding 178.5-8 chr10 80382943 80383184 + 1 NA Intergenic Intergenic -24766 NM_001243779 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 171.5-45 chr2 122825622 122825982 + 1 NA Intergenic Intergenic 247679 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 211.25-28 chr3 178584054 178584502 + 1 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 25428 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 194.5-21 chr14 40284311 40284645 + 1 NA Intergenic Intergenic -670233 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 135.5-30 chr14 49014861 49015188 + 1 NA Intergenic L2c|LINE|L2 571356 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 131.25-27 chr12 49103548 49103836 + 1 NA exon (NM_001300750, exon 7 of 18) exon (NM_001300750, exon 7 of 18) 7208 NM_001352161 55716 Hs.272838 NM_018113 ENSG00000139636 LMBR1L LIMR limb development membrane protein 1 like protein-coding 113.75-81 chr4 67556856 67557001 + 1 NA Intergenic Intergenic -1799 NM_012108 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 148.5-111 chr8 134636130 134636333 + 1 NA intron (NM_020863, intron 3 of 15) MIR|SINE|MIR 38160 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 115.25-28 chr12 128959168 128959314 + 1 NA intron (NM_144669, intron 7 of 7) intron (NM_144669, intron 7 of 7) 105763 NM_001366887 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 169.25-47 chr5 19295829 19296206 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger 590255 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 160.75-42 chr3 77624029 77624310 + 1 NA intron (NM_001290039, intron 24 of 26) intron (NM_001290039, intron 24 of 26) 424794 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 190.5-55 chr4 66912501 66912839 + 1 NA Intergenic Intergenic 509330 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 163.25-54 chr5 36527572 36527849 + 1 NA Intergenic Intergenic -78645 NM_001289940 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 197.5-15 chr13 26121077 26121321 + 1 NA Intergenic AluSx1|SINE|Alu -61677 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 230.5-14 chr13 84782182 84782526 + 1 NA Intergenic L1ME3G|LINE|L1 -1300 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 123.75-66 chr3 7990874 7991047 + 1 NA intron (NR_110131, intron 2 of 3) intron (NR_110131, intron 2 of 3) 25347 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 161.5 chr1 8106953 8107204 + 1 NA Intergenic L1MB7|LINE|L1 -80769 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 282.75-9 chr2 33779726 33780048 + 1 NA intron (NR_126403, intron 1 of 5) L2b|LINE|L2 -51670 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 198.5-11 chr12 2044778 2045069 + 1 NA Intergenic Intergenic -3429 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 170.5-48 chr22 24782056 24782284 + 1 NA Intergenic AluSq|SINE|Alu -7450 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 243.75-19 chr3 133905731 133906054 + 1 NA Intergenic L1MEg|LINE|L1 -10010 NM_016577 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 155.5-2 chr1 31003234 31003496 + 1 NA intron (NM_001020658, intron 5 of 21) intron (NM_001020658, intron 5 of 21) -35128 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 237.75-6 chr10 60799980 60800420 + 1 NA Intergenic Intergenic 21722 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 281.75-2 chr11 115452219 115452550 + 1 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 52031 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 219.5-37 chr4 63420392 63420763 + 1 NA Intergenic LTR8B|LTR|ERV1 988873 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 137.25-45 chr2 211120514 211120780 + 1 NA Intergenic L2|LINE|L2 503076 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 205.5 chr1 200211280 200211485 + 1 NA Intergenic Tigger3|DNA|TcMar-Tigger 162410 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 171.5-26 chr14 63475554 63475804 + 1 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 32559 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 175.5-22 chr13 53912802 53913050 + 1 NA Intergenic UCON66|Unknown|Unknown 97507 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 125.75-12 chr11 23528021 23528168 + 1 NA Intergenic Intergenic -108904 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 181.75-49 chrX 155111305 155111667 + 1 NA intron (NM_024332, intron 8 of 11) L1MDb|LINE|L1 40066 NM_024332 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 236.25-33 chr5 157889856 157890315 + 1 NA Intergenic AluSp|SINE|Alu -30940 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 191.25-31 chr2 60117754 60118058 + 1 NA Intergenic L1PA14|LINE|L1 265130 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 117.25-66 chr4 65375009 65375207 + 1 NA intron (NM_182472, intron 8 of 16) intron (NM_182472, intron 8 of 16) 294380 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 217.5-45 chr8 46325501 46325747 + 1 NA Intergenic ALR/Alpha|Satellite|centr 292019 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 144.5-44 chr15 99270445 99270702 + 1 NA intron (NR_135755, intron 2 of 8) L1MB5|LINE|L1 13048 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 149.5-115 chrX 102694993 102695200 + 1 NA intron (NR_146585, intron 2 of 6) L1MB8|LINE|L1 -16954 NR_146587 100528062 Hs.522729 NM_001199818 ENSG00000286237 ARMCX5-GPRASP2 ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP ARMCX5-GPRASP2 readthrough protein-coding 121.5-18 chr10 114341265 114341386 + 1 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 63177 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 193.5-7 chr10 28909057 28909538 + 1 NA Intergenic Intergenic 62889 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 202.5-55 chr8 15767030 15767421 + 1 NA TTS (NM_006765) TTS (NM_006765) 226962 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 157.75-75 chr8 108300147 108300344 + 1 NA Intergenic Intergenic -51528 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 158.5-35 chr14 89264635 89264861 + 1 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 152485 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 218.75-36 chr7 16226339 16226615 + 1 NA intron (NM_001101426, intron 8 of 9) intron (NM_001101426, intron 8 of 9) 15991 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 229.5-15 chr12 9843207 9843511 + 1 NA intron (NR_120305, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 15878 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 167.25-30 chr17 43081682 43082037 + 1 NA intron (NM_007300, intron 12 of 23) intron (NM_007300, intron 12 of 23) 42256 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 172.5-13 chr14 25347801 25348068 + 1 NA Intergenic MLT1D|LTR|ERVL-MaLR -297637 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 118.5-23 chr10 118858879 118859018 + 1 NA Intergenic MER58A|DNA|hAT-Charlie -103978 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 331.25-11 chr8 112489754 112490222 + 1 NA intron (NM_001363185, intron 29 of 66) intron (NM_001363185, intron 29 of 66) -153505 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 161.75-20 chr15 61530284 61530598 + 1 NA Intergenic L1ME3G|LINE|L1 -199477 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 125.5-59 chr19 9416020 9416189 + 1 NA intron (NM_001370400, intron 9 of 10) AluSg|SINE|Alu 19469 NM_001370385 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 204.5-72 chr9 88996453 88996819 + 1 NA TTS (NM_001142413) TTS (NM_001142413) 5168 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 234.25-8 chr14 65360652 65361049 + 1 NA Intergenic MIRc|SINE|MIR -25667 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 125.5-105 chr5 55358165 55358354 + 1 NA intron (NM_015360, intron 14 of 26) intron (NM_015360, intron 14 of 26) 50270 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 154.5-7 chr1 217444608 217444878 + 1 NA intron (NM_018040, intron 9 of 9) intron (NM_018040, intron 9 of 9) 186347 NM_018040 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 211.5-45 chr6 69013702 69014108 + 1 NA intron (NM_001704, intron 11 of 31) intron (NM_001704, intron 11 of 31) 378623 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 163.5-66 chr5 53009309 53009569 + 1 NA intron (NR_073107, intron 1 of 28) MLT1D-int|LTR|ERVL-MaLR 20087 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 153.75-88 chr8 120805417 120805570 + 1 NA intron (NM_021021, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 6553 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 225.5-10 chr10 58520824 58521091 + 1 NA intron (NM_001080512, intron 1 of 20) L2a|LINE|L2 8085 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 131.5-66 chr4 76374843 76375033 + 1 NA intron (NM_001042784, intron 8 of 23) intron (NM_001042784, intron 8 of 23) 32367 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 180.75-42 chr22 40777064 40777314 + 1 NA intron (NM_006358, intron 6 of 8) intron (NM_006358, intron 6 of 8) 36769 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 177.25-44 chr6 49970773 49971010 + 1 NA Intergenic Intergenic -1266 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 195.5-9 chr10 14107636 14107989 + 1 NA intron (NR_134578, intron 2 of 3) L1MC5|LINE|L1 33528 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 145.5-104 chrX 70598655 70598969 + 1 NA intron (NM_001003811, intron 25 of 30) L1MB8|LINE|L1 -142818 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 113.5-17 chr10 61476631 61476788 + 1 NA intron (NR_120643, intron 2 of 5) MIR|SINE|MIR -3332 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 134.5-29 chr16 62932217 62932416 + 1 NA Intergenic Intergenic -895878 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 143.25-6 chr10 22906972 22907307 + 1 NA Intergenic Intergenic -20885 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 140.25-50 chr3 18867376 18867552 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -281046 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 168.5-20 chr13 74984890 74985204 + 1 NA Intergenic Intergenic 255334 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 182.5-55 chr5 37370703 37371030 + 1 NA exon (NM_153485, exon 1 of 35) exon (NM_153485, exon 1 of 35) 240 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 126.25-90 chr8 103178926 103179076 + 1 NA intron (NM_001024372, intron 1 of 1) LTR37B|LTR|ERV1 -6861 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 283.5-30 chr8 132373926 132374342 + 1 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 73128 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 115.5-103 chr9 90043026 90043172 + 1 NA Intergenic Intergenic -1600 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 191.75-30 chr4 65131144 65131550 + 1 NA Intergenic Intergenic -126847 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 195.75-39 chr4 104310417 104310703 + 1 NA Intergenic L1MB4|LINE|L1 -180405 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 157.75-8 chr1 158060942 158061213 + 1 NA intron (NM_001286349, intron 1 of 12) intron (NM_001286349, intron 1 of 12) 35527 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 142.25-26 chr16 8356876 8357120 + 1 NA Intergenic L1PA15|LINE|L1 232840 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 309.5-17 chr6 100879515 100880041 + 1 NA intron (NM_006828, intron 1 of 41) intron (NM_006828, intron 1 of 41) 1551 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 147.5-35 chr17 58128004 58128278 + 1 NA Intergenic AluJr|SINE|Alu -27013 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 181.75-28 chr3 191928883 191929137 + 1 NA Intergenic LTR7|LTR|ERV1 -309620 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 179.5-28 chr13 67941700 67942014 + 1 NA Intergenic Intergenic 569470 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 149.5-78 chr5 2416136 2416318 + 1 NA Intergenic Intergenic -104026 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 203.5-35 chr4 70830502 70830849 + 1 NA intron (NM_001098477, intron 5 of 9) AluSz|SINE|Alu 8828 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 344.25-4 chr2 154253360 154253857 + 1 NA intron (NM_052917, intron 7 of 12) FLAM_A|SINE|Alu 203830 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 126.5-12 chr10 25267002 25267165 + 1 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -90807 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 145.25-57 chr4 78074325 78074646 + 1 NA intron (NM_001166133, intron 2 of 41) L2b|LINE|L2 16915 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 119.5-30 chr12 103232293 103232471 + 1 NA Intergenic L1MC1|LINE|L1 80540 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 201.5-47 chr5 39031292 39031562 + 1 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 42972 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 219.75-3 chr10 63124093 63124398 + 1 NA Intergenic MER72|LTR|ERV1 -9002 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 137.5-47 chr18 8769057 8769344 + 1 NA intron (NM_015210, intron 4 of 16) intron (NM_015210, intron 4 of 16) 51819 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 130.5-99 chr8 119017165 119017424 + 1 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -49953 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 227.75-13 chr2 221887449 221887889 + 1 NA Intergenic Intergenic -313467 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 159.5-26 chr14 65114588 65114799 + 1 NA Intergenic MIR3|SINE|MIR -11998 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 179.5-102 chr9 91826332 91826592 + 1 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 123766 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 205.25-11 chr13 79655175 79655534 + 1 NA Intergenic Intergenic 88627 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 174.5-71 chr5 98766377 98766685 + 1 NA Intergenic Intergenic -2101 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 118.75-24 chr12 96360888 96361134 + 1 NA intron (NM_002595, intron 1 of 16) LTR50|LTR|ERVL 39428 NM_001170464 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 143.5-63 chr22 31497647 31497813 + 1 NA intron (NM_001258326, intron 1 of 30) Tigger1|DNA|TcMar-Tigger 1194 NM_001258327 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 241.5-19 chr2 180839705 180840087 + 1 NA intron (NR_104324, intron 4 of 4) intron (NR_104324, intron 4 of 4) -140489 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 149.5-12 chr10 30130948 30131198 + 1 NA Intergenic Intergenic -15579 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 168.75-21 chr2 5718614 5718907 + 1 NA Intergenic L2a|LINE|L2 26376 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 216.5-15 chr17 65663744 65664152 + 1 NA intron (NM_001353129, intron 24 of 26) AluY|SINE|Alu -102300 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 136.5-91 chr5 64528904 64529242 + 1 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 23058 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 144.5-50 chr19 8475433 8475602 + 1 NA intron (NM_001297418, intron 10 of 13) intron (NM_001297418, intron 10 of 13) 27123 NM_032152 84106 Hs.465812 NM_032152 ENSG00000133246 PRAM1 PML-RAR|PRAM-1 PML-RARA regulated adaptor molecule 1 protein-coding 229.75-28 chr6 134086863 134087130 + 1 NA Intergenic Intergenic 30684 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 139.75-57 chr4 54924404 54924725 + 1 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 201031 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 178.25-28 chr2 76835228 76835470 + 1 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -150616 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 131.5-41 chr2 60784314 60784503 + 1 NA intron (NM_022894, intron 13 of 21) intron (NM_022894, intron 13 of 21) 28140 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 214.5-63 chr9 96713955 96714169 + 1 NA Intergenic MER65C|LTR|ERV1 -11759 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 236.5-16 chr14 33967468 33967908 + 1 NA Intergenic Intergenic -16614 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 332.5-6 chr14 67331387 67331918 + 1 NA intron (NM_001256550, intron 14 of 14) intron (NM_001256550, intron 14 of 14) 28152 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 163.5-7 chr1 145700252 145700486 + 1 NA intron (NM_002614, intron 1 of 9) intron (NM_002614, intron 1 of 9) 6999 NM_001201325 5174 Hs.444751 NM_002614 ENSG00000174827 PDZK1 CAP70|CLAMP|NHERF-3|NHERF3|PDZD1 PDZ domain containing 1 protein-coding 148.25-54 chr3 195321285 195321545 + 1 NA intron (NM_012287, intron 9 of 22) AluSx|SINE|Alu -50256 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 260.25-6 chr17 60231836 60232127 + 1 NA promoter-TSS (NR_002999) promoter-TSS (NR_002999) -336 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 200.75-20 chr2 109590019 109590229 + 1 NA intron (NM_001321500, intron 1 of 8) (AT)n|Simple_repeat|Simple_repeat 23543 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 137.25-73 chr8 3018221 3018379 + 1 NA intron (NM_033225, intron 52 of 69) intron (NM_033225, intron 52 of 69) -289849 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 207.25-20 chr4 72647069 72647458 + 1 NA Intergenic MER20|DNA|hAT-Charlie -78042 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 117.5-41 chr2 9629653 9629899 + 1 NA intron (NM_006826, intron 2 of 5) X9_LINE|LINE|L1 1221 NM_006826 10971 Hs.74405 NM_006826 ENSG00000134308 YWHAQ 14-3-3|1C5|HS1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 170.25-36 chr2 185056866 185057215 + 1 NA Intergenic LTR24C|LTR|ERV1 110032 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 121.25-67 chr6 128683620 128683790 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -163106 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 268.75-6 chr10 102657473 102658004 + 1 NA non-coding (NR_144321, exon 6 of 6) non-coding (NR_144321, exon 6 of 6) 13243 NM_001345950 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 165.25-28 chr2 182327607 182327876 + 1 NA intron (NM_005019, intron 1 of 14) L2a|LINE|L2 -85678 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 130.75-59 chr5 22414003 22414309 + 1 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -200306 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 131.25-2 chr1 43026191 43026356 + 1 NA Intergenic MLT1A|LTR|ERVL-MaLR 67224 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 156.5-41 chr2 237021424 237021604 + 1 NA Intergenic Intergenic 34653 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 202.75-11 chr16 61346094 61346466 + 1 NA Intergenic L2c|LINE|L2 -290514 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 151.75 chr1 9421175 9421328 + 1 NA Intergenic Intergenic 7665 NR_104623 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 152.75-64 chr8 104507564 104507776 + 1 NA intron (NM_013437, intron 3 of 6) intron (NM_013437, intron 3 of 6) -23205 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 123.5-7 chr1 244480664 244480829 + 1 NA intron (NM_001242340, intron 4 of 18) MamGypLTR1a|LTR|Gypsy 19375 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 157.5-90 chr6 150506684 150506945 + 1 NA Intergenic L1MA3|LINE|L1 -93071 NM_001029884 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 233.5-2 chr1 65185148 65185524 + 1 NA intron (NM_001330616, intron 1 of 4) MER45A|DNA|hAT-Tip100 36342 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 225.5-19 chr15 96464872 96465116 + 1 NA Intergenic Intergenic 131229 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 213.5-21 chr18 1236511 1236813 + 1 NA Intergenic L1MB7|LINE|L1 122967 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 122.25-65 chr3 175090944 175091105 + 1 NA intron (NR_046390, intron 2 of 3) intron (NR_046390, intron 2 of 3) 24218 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 180.5-40 chr2 44936878 44937143 + 1 NA intron (NR_147194, intron 1 of 2) intron (NR_147194, intron 1 of 2) 1878 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 114.25-7 chr1 156386733 156386908 + 1 NA Intergenic AluJo|SINE|Alu 17609 NR_046115 57127 Hs.131835 NM_020407 ENSG00000132677 RHBG SLC42A2 Rh family B glycoprotein (gene/pseudogene) protein-coding 153.25-18 chr14 69618152 69618321 + 1 NA intron (NM_014734, intron 1 of 5) Tigger4b|DNA|TcMar-Tigger 6640 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 449.5 chr14 69700157 69700894 + 1 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -66617 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 238.5-9 chr10 98813669 98814029 + 1 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 110719 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 137.75-36 chr17 52429084 52429335 + 1 NA intron (NR_146898, intron 1 of 3) AluJo|SINE|Alu 38687 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 236.5-29 chr21 42371767 42372252 + 1 NA 3' UTR (NM_001256317, exon 13 of 13) 3' UTR (NM_001256317, exon 13 of 13) -5474 NM_003225 7031 Hs.162807 NM_003225 ENSG00000160182 TFF1 BCEI|D21S21|HP1.A|HPS2|pNR-2|pS2 trefoil factor 1 protein-coding 258.25-13 chr2 206430939 206431232 + 1 NA Intergenic Charlie1a|DNA|hAT-Charlie -12447 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 174.25-6 chr1 64909111 64909550 + 1 NA intron (NM_001321852, intron 1 of 24) intron (NM_001321852, intron 1 of 24) 57219 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 123.75-70 chr3 54203315 54203524 + 1 NA intron (NM_018398, intron 2 of 37) LTR1A2|LTR|ERV1 80867 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 147.5-66 chr4 176804020 176804327 + 1 NA Intergenic L1M4|LINE|L1 -11251 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 240.5-5 chr1 170565450 170565764 + 1 NA Intergenic Intergenic -32998 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 134.25-5 chr10 9879341 9879505 + 1 NA Intergenic MER74B|LTR|ERVL -179299 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 186.25-30 chr2 217894925 217895240 + 1 NA intron (NM_001308023, intron 5 of 29) intron (NM_001308023, intron 5 of 29) 5546 NR_106867 102465485 NR_106867 ENSG00000275458 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 143.5-84 chr5 39439622 39439865 + 1 NA Intergenic Intergenic -14510 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 145.75-51 chr22 50311487 50311769 + 1 NA 3' UTR (NM_001001794, exon 20 of 20) 3' UTR (NM_001001794, exon 20 of 20) -3982 NM_012401 23654 Hs.3989 NM_012401 ENSG00000196576 PLXNB2 MM1|Nbla00445|PLEXB2|dJ402G11.3 plexin B2 protein-coding 173.75-12 chr11 43995360 43995567 + 1 NA Intergenic L2b|LINE|L2 -52518 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 261.75-7 chr14 73194406 73194797 + 1 NA intron (NM_000021, intron 7 of 11) AluY|SINE|Alu -42905 NR_158678 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 132.5-56 chr2 177509877 177510058 + 1 NA intron (NM_003659, intron 16 of 19) intron (NM_003659, intron 16 of 19) 42829 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 182.5-58 chr5 94614598 94614808 + 1 NA intron (NM_001145678, intron 1 of 20) L2b|LINE|L2 3901 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 255.25-20 chr4 70258718 70259098 + 1 NA Intergenic L1MC1|LINE|L1 16292 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 133.5-118 chr8 122471017 122471195 + 1 NA intron (NR_131202, intron 2 of 3) L1PREC2|LINE|L1 97538 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 124.5-49 chr19 49263427 49263603 + 1 NA Intergenic L1MEc|LINE|L1 45353 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 152.75-35 chr2 203506798 203507226 + 1 NA intron (NM_001329728, intron 1 of 15) AluSq2|SINE|Alu 28289 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 132.5-59 chr2 212777695 212777883 + 1 NA Intergenic Intergenic -17542 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 179.5-81 chr6 97410353 97410623 + 1 NA intron (NR_110757, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 104902 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 208.5-34 chr18 45902081 45902370 + 1 NA intron (NM_020964, intron 25 of 43) intron (NM_020964, intron 25 of 43) 65104 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 207.5-35 chr21 16244152 16244540 + 1 NA intron (NR_027790, intron 4 of 7) AluSx1|SINE|Alu 40422 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 184.5-48 chr20 39208949 39209206 + 1 NA Intergenic LTR16A2|LTR|ERVL 15671 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 116.5-16 chr11 33348499 33348630 + 1 NA exon (NM_005734, exon 13 of 17) exon (NM_005734, exon 13 of 17) -27544 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 160.5-84 chr9 113013908 113014178 + 1 NA Intergenic L1MA10|LINE|L1 -1851 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 129.25-28 chr14 65264588 65264856 + 1 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -42375 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 240.5-18 chr14 90865708 90866018 + 1 NA 3' UTR (NM_001322234, exon 17 of 17) 3' UTR (NM_001322234, exon 17 of 17) -49433 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 197.25-7 chr10 29997043 29997511 + 1 NA Intergenic Intergenic 62309 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 219.5-32 chr3 144760584 144760971 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 787696 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 212.25-43 chr9 33339066 33339334 + 1 NA intron (NM_002504, intron 12 of 23) THE1B|LTR|ERVL-MaLR 48684 NM_001318758 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 164.5-46 chr20 10832790 10832960 + 1 NA Intergenic Intergenic 76397 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 227.5-38 chr4 85897684 85898027 + 1 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -32161 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 124.75-63 chr3 155328607 155328879 + 1 NA Intergenic MIRb|SINE|MIR -35060 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 152.5-43 chr16 78489943 78490152 + 1 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 390393 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 286.5-6 chr12 16811102 16811414 + 1 NA Intergenic Intergenic -177489 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 133.25-16 chr11 105545112 105545387 + 1 NA Intergenic AluJb|SINE|Alu -64824 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 119.25-50 chr2 68736097 68736249 + 1 NA intron (NM_001364821, intron 1 of 10) intron (NM_001364821, intron 1 of 10) 796 NM_001364821 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 240.25-14 chr20 55564007 55564374 + 1 NA Intergenic L1PA16|LINE|L1 -136993 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 117.5-92 chr8 62522162 62522395 + 1 NA intron (NM_001304533, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 273424 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 173.5-87 chr5 119212587 119212854 + 1 NA intron (NM_001290321, intron 34 of 43) intron (NM_001290321, intron 34 of 43) -56039 NM_001286817 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 120.5-43 chr19 37728483 37728655 + 1 NA Intergenic Intergenic -8808 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 164.5 chr1 8951269 8951511 + 1 NA intron (NM_001270500, intron 2 of 7) intron (NM_001270500, intron 2 of 7) 5522 NM_001215 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 280.5-7 chr12 131280662 131281015 + 1 NA Intergenic Intergenic 17134 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 141.75-83 chr8 118317042 118317408 + 1 NA intron (NM_001101676, intron 4 of 4) MLT1B|LTR|ERVL-MaLR -205406 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 218.75-14 chr13 94481192 94481456 + 1 NA intron (NM_001322185, intron 1 of 7) MLT1D|LTR|ERVL-MaLR -1642 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 119.25-13 chr11 57224525 57224782 + 1 NA Intergenic L2a|LINE|L2 12597 NR_027991 187 Hs.438311 NM_005161 ENSG00000134817 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 161.25-83 chrX 48635334 48635647 + 1 NA Intergenic AluSz|SINE|Alu 37998 NR_029427 64743 Hs.521973 NM_017883 ENSG00000101940 WDR13 MG21 WD repeat domain 13 protein-coding 138.75-58 chr5 16619051 16619395 + 1 NA intron (NR_109946, intron 1 of 3) intron (NR_109946, intron 1 of 3) -2165 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 173.5-14 chr12 39048915 39049108 + 1 NA Intergenic AluSq10|SINE|Alu -143420 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 182.5-49 chr4 45641841 45642059 + 1 NA Intergenic (CCTT)n|Simple_repeat|Simple_repeat 482104 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 168.5-22 chr14 36780969 36781213 + 1 NA intron (NM_001171170, intron 3 of 10) L1M3c|LINE|L1 123523 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 213.5-47 chr7 39215835 39216182 + 1 NA intron (NM_001370959, intron 4 of 9) MLT1A0|LTR|ERVL-MaLR 113126 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 197.5-22 chr14 90821037 90821309 + 1 NA Intergenic Intergenic -4743 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 180.5-64 chr3 184145725 184146028 + 1 NA TTS (NM_003907) TTS (NM_003907) -9501 NM_004423 1857 Hs.388116 NM_004423 ENSG00000161202 DVL3 DRS3 dishevelled segment polarity protein 3 protein-coding 246.25-5 chr14 45131798 45132105 + 1 NA intron (NM_002013, intron 1 of 6) intron (NM_002013, intron 1 of 6) 2530 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FKBP prolyl isomerase 3 protein-coding 148.75-67 chr7 33209621 33209902 + 1 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 80197 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 139.5-19 chr12 27993605 27993826 + 1 NA Intergenic Intergenic -20982 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 170.5-60 chr5 37310945 37311191 + 1 NA intron (NM_004298, intron 22 of 34) intron (NM_004298, intron 22 of 34) 60038 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 123.5-59 chr20 46557834 46558032 + 1 NA 3' UTR (NM_022829, exon 13 of 13) 3' UTR (NM_022829, exon 13 of 13) -7279 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 194.75-2 chr1 245739042 245739290 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -504649 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 180.5-33 chr19 56379649 56379877 + 1 NA TTS (NR_003127) TTS (NR_003127) -11380 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 133.25-43 chr2 117710171 117710413 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -104399 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 208.5-58 chr5 19388384 19388790 + 1 NA Intergenic A-rich|Low_complexity|Low_complexity 497685 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 191.5-68 chr8 87295320 87295562 + 1 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 429026 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192.25-18 chr14 64166244 64166562 + 1 NA intron (NM_015180, intron 90 of 114) intron (NM_015180, intron 90 of 114) -47741 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 129.75-13 chr10 97438522 97438651 + 1 NA intron (NM_001318364, intron 2 of 4) AluJo|SINE|Alu 7420 NR_134587 51013 Hs.632089 NM_016046 ENSG00000171311 EXOSC1 CGI-108|CSL4|Csl4p|SKI4|Ski4p|p13 exosome component 1 protein-coding 131.25-15 chr10 33488169 33488436 + 1 NA Intergenic MIRb|SINE|MIR -153397 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 122.25-30 chr14 59602719 59602927 + 1 NA intron (NM_021136, intron 8 of 8) intron (NM_021136, intron 8 of 8) 7316 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 164.5-54 chr3 89225283 89225539 + 1 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 117790 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 267.5-4 chr10 85329450 85329788 + 1 NA Intergenic L1PB1|LINE|L1 103153 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 196.5-20 chr11 93370608 93370957 + 1 NA intron (NM_181645, intron 6 of 13) intron (NM_181645, intron 6 of 13) 40065 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 288.75-6 chr17 62130610 62130975 + 1 NA Intergenic Intergenic -65514 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 118.5-120 chr9 37483779 37483919 + 1 NA Intergenic L2b|LINE|L2 -2086 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 138.5-108 chr8 123579713 123579909 + 1 NA Intergenic L2a|LINE|L2 -38605 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 119.25-62 chr22 19394443 19394593 + 1 NA intron (NM_003325, intron 7 of 24) intron (NM_003325, intron 7 of 24) 37215 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 139.5-95 chr6 160225335 160225495 + 1 NA intron (NM_003058, intron 9 of 10) intron (NM_003058, intron 9 of 10) 33406 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 209.5-16 chr2 70665557 70665928 + 1 NA intron (NM_001617, intron 15 of 15) intron (NM_001617, intron 15 of 15) 101973 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 166.5-53 chr2 21150540 21150833 + 1 NA Intergenic Intergenic 26700 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 171.5-80 chr6 101447177 101447415 + 1 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 48311 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 131.5-30 chr16 60157899 60158175 + 1 NA Intergenic Intergenic 201756 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 194.5-4 chr1 199140481 199140725 + 1 NA Intergenic Intergenic -7995 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 185.25-30 chr20 3417974 3418174 + 1 NA Intergenic L1ME2|LINE|L1 -10412 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 118.25-91 chr6 73978070 73978273 + 1 NA Intergenic Intergenic -91280 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 222.75-27 chr2 240382577 240382891 + 1 NA Intergenic Intergenic -52929 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 145.25-56 chr4 70128799 70128968 + 1 NA Intergenic Intergenic -4721 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 219.5-18 chr15 77596626 77596972 + 1 NA Intergenic Intergenic 36113 NM_032808 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 227.5-26 chr2 26975512 26975923 + 1 NA intron (NM_012326, intron 1 of 6) intron (NM_012326, intron 1 of 6) 5080 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 122.25-70 chr4 114100757 114100904 + 1 NA Intergenic Intergenic -121183 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 169.25-48 chr5 34049851 34050029 + 1 NA intron (NR_146599, intron 7 of 11) MLT2D|LTR|ERVL -6727 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 150.25-25 chr14 63547889 63548162 + 1 NA Intergenic Intergenic -4630 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 143.5-68 chr4 29965725 29966027 + 1 NA Intergenic Intergenic 751584 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 118.5-18 chr10 32673915 32674116 + 1 NA intron (NM_001321115, intron 22 of 43) L1M4c|LINE|L1 227457 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 144.75-95 chr9 122043212 122043569 + 1 NA intron (NM_194252, intron 1 of 3) L1MB3|LINE|L1 50216 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 241.75-10 chr15 70295958 70296276 + 1 NA Intergenic L1ME1|LINE|L1 -198200 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 195.5-26 chr14 64443123 64443431 + 1 NA intron (NM_005956, intron 21 of 27) Charlie1b|DNA|hAT-Charlie -22222 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 120.25-57 chr5 9131828 9132119 + 1 NA intron (NM_003966, intron 13 of 22) intron (NM_003966, intron 13 of 22) -78078 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 173.5-50 chr2 185523333 185523562 + 1 NA Intergenic THE1A-int|LTR|ERVL-MaLR 215272 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 154.25-13 chr11 8097896 8098172 + 1 NA intron (NM_177972, intron 8 of 11) intron (NM_177972, intron 8 of 11) 16672 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 235.5-52 chr7 70812818 70813146 + 1 NA Intergenic L1MA9|LINE|L1 -319162 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 245.5-29 chr4 132572664 132573156 + 1 NA Intergenic L1MA8|LINE|L1 -18179 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 246.5 chr1 63983585 63983966 + 1 NA intron (NM_005012, intron 1 of 8) MIRb|SINE|MIR 128430 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 166.25-41 chr3 64491926 64492221 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR -69273 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 114.25-43 chr17 81180877 81181042 + 1 NA intron (NM_001354639, intron 3 of 6) intron (NM_001354639, intron 3 of 6) -14738 NM_001080395 9625 Hs.514575 NM_004920 ENSG00000181409 AATK AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP apoptosis associated tyrosine kinase protein-coding 146.25-7 chr10 12537540 12537711 + 1 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) -41128 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 143.75-81 chr7 99491156 99491361 + 1 NA intron (NM_001345968, intron 2 of 2) intron (NM_001345968, intron 2 of 2) 9023 NM_001345967 84124 Hs.386324 NM_032164 ENSG00000160908 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 155.75-21 chr17 39742035 39742200 + 1 NA intron (NM_001242443, intron 1 of 14) MIRc|SINE|MIR 2150 NM_001242443 2886 Hs.86859 NM_005310 ENSG00000141738 GRB7 - growth factor receptor bound protein 7 protein-coding 135.5-55 chr2 157609418 157609704 + 1 NA intron (NM_145259, intron 1 of 8) L1MA4A|LINE|L1 -12001 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 123.25-35 chr18 71890224 71890453 + 1 NA Intergenic L2|LINE|L2 -108112 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 220.25-39 chr7 95594632 95595036 + 1 NA intron (NM_002612, intron 2 of 10) intron (NM_002612, intron 2 of 10) 1682 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 120.25-17 chr11 114224843 114225047 + 1 NA intron (NM_006006, intron 4 of 6) L2c|LINE|L2 -70868 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 127.5-20 chr11 8139579 8139884 + 1 NA intron (NM_001206671, intron 2 of 5) MIRc|SINE|MIR 29294 NR_144485 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 167.75-45 chr3 37818769 37818978 + 1 NA intron (NM_002207, intron 27 of 27) intron (NM_002207, intron 27 of 27) 42907 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 123.25 chr1 64733010 64733315 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -11811 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 132.75-53 chr2 38071387 38071519 + 1 NA intron (NM_000104, intron 2 of 2) intron (NM_000104, intron 2 of 2) 4728 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 169.75-5 chr10 75965243 75965633 + 1 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 182677 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 187.5-87 chr8 120360439 120360704 + 1 NA intron (NM_021110, intron 45 of 47) L2c|LINE|L2 84579 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 210.5-31 chr2 34808051 34808320 + 1 NA Intergenic Intergenic 130628 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 113.5-111 chr7 94524941 94525119 + 1 NA intron (NM_001363427, intron 4 of 17) L1MC4|LINE|L1 15221 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 173.5-39 chr2 14455729 14455993 + 1 NA Intergenic MER66-int|LTR|ERV1 -54903 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 131.75-45 chr2 117378859 117379106 + 1 NA Intergenic LTR24B|LTR|ERV1 -435709 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 136.25-67 chr5 169540615 169540813 + 1 NA Intergenic Intergenic -43059 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 195.25-34 chr5 31679327 31679633 + 1 NA intron (NM_178140, intron 1 of 24) (TGTTG)n|Simple_repeat|Simple_repeat 40349 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 114.5-60 chr2 236652345 236652503 + 1 NA Intergenic L1ME1|LINE|L1 82599 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 198.25-14 chr15 63776926 63777206 + 1 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 56882 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 120.5-87 chr5 148798611 148798802 + 1 NA Intergenic Intergenic -27887 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 173.5-71 chr3 159827067 159827371 + 1 NA intron (NM_001197113, intron 5 of 10) intron (NM_001197113, intron 5 of 10) -12642 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 126.25-62 chr4 33076421 33076677 + 1 NA Intergenic Intergenic 725511 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 198.5-19 chr19 33574184 33574452 + 1 NA Intergenic HAL1|LINE|L1 -47635 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 242.75-20 chr7 85221965 85222207 + 1 NA Intergenic Intergenic -100155 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 194.5-38 chr20 10190105 10190457 + 1 NA intron (NR_040710, intron 2 of 4) MIR|SINE|MIR -28517 NM_001322904 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 247.25-13 chr2 99258655 99259129 + 1 NA Intergenic L1M5|LINE|L1 -3785 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 142.25-40 chr22 35678931 35679133 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 30586 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 138.25-24 chr13 104125514 104125772 + 1 NA Intergenic Intergenic 700443 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 176.5-86 chr9 28326728 28326965 + 1 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 392459 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 129.5-45 chr2 122861503 122861894 + 1 NA Intergenic Intergenic 211783 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 158.25-21 chr17 70294277 70294687 + 1 NA Intergenic L1PA10|LINE|L1 124947 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 167.25-40 chr20 20053179 20053381 + 1 NA promoter-TSS (NM_001278628) promoter-TSS (NM_001278628) 748 NM_015585 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 146.5-101 chrX 145984549 145984807 + 1 NA Intergenic Intergenic 8148 NR_106783 102466721 NR_106783 ENSG00000252219 MIR892C hsa-mir-892c microRNA 892c ncRNA 120.75-89 chr6 125510434 125510596 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -163838 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 180.5-46 chr2 194943564 194943801 + 1 NA Intergenic Intergenic 213087 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 177.5-10 chr11 41367264 41367459 + 1 NA intron (NM_001258419, intron 1 of 6) MER5A|DNA|hAT-Charlie 92275 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 121.25-83 chr8 123925091 123925353 + 1 NA intron (NM_001039112, intron 1 of 40) MLT1J|LTR|ERVL-MaLR 73235 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 112.75-76 chr6 62394558 62394690 + 1 NA Intergenic Intergenic -108397 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 179.5-27 chr12 42908905 42909242 + 1 NA Intergenic Intergenic 216857 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 115.5-99 chr8 110032656 110032844 + 1 NA Intergenic MLT1I|LTR|ERVL-MaLR -56979 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 269.25-12 chr2 117436680 117437009 + 1 NA Intergenic Intergenic -377847 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 157.75-57 chr4 43208365 43208651 + 1 NA Intergenic AluSc|SINE|Alu 284035 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 222.25-24 chr5 107910242 107910635 + 1 NA intron (NM_001163315, intron 7 of 8) L1M5|LINE|L1 -239501 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 138.75-29 chr17 63218759 63218983 + 1 NA intron (NM_025185, intron 6 of 25) AluSq|SINE|Alu 221396 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 141.75-31 chr16 72700603 72700807 + 1 NA Intergenic Intergenic -35735 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 117.25-60 chr3 140143803 140143940 + 1 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 208686 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 128.5-52 chr21 30944431 30944694 + 1 NA Intergenic Intergenic -62982 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 194.5-7 chr10 15190275 15190620 + 1 NA Intergenic Intergenic -21754 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 115.25-72 chr4 144609970 144610211 + 1 NA Intergenic Intergenic 35929 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 157.75-52 chr3 68432467 68432726 + 1 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -68041 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 178.5-53 chr4 55034558 55034775 + 1 NA Intergenic MIR|SINE|MIR 90929 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 176.5-45 chr2 17452751 17453039 + 1 NA Intergenic L1MC4|LINE|L1 65545 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 191.5-10 chr11 66361737 66362044 + 1 NA TTS (NM_001300869) TTS (NM_001300869) 9870 NM_001532 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 143.5-54 chr2 129402171 129402423 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -128406 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 159.5-77 chr7 146409491 146409707 + 1 NA Intergenic Intergenic -364672 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 268.25-9 chr2 134920894 134921256 + 1 NA intron (NR_135468, intron 2 of 9) intron (NR_135468, intron 2 of 9) 2253 NM_001320749 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 127.75-17 chr11 31522409 31522702 + 1 NA intron (NM_001288725, intron 2 of 10) L1ME4b|LINE|L1 12788 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 159.75-69 chr8 135854651 135854835 + 1 NA Intergenic Intergenic 397287 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 200.75-30 chr5 13953431 13953778 + 1 NA Intergenic Intergenic -9124 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 185.25 chr1 70759306 70759582 + 1 NA intron (NR_125938, intron 5 of 6) intron (NR_125938, intron 5 of 6) 52991 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 155.25-12 chr12 59303960 59304226 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -291936 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 130.5-93 chr7 152404289 152404489 + 1 NA intron (NM_170606, intron 1 of 58) AluSx|SINE|Alu 31614 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 181.25-26 chr19 51417341 51417743 + 1 NA promoter-TSS (NM_001171161) promoter-TSS (NM_001171161) 100 NM_001322105 89790 Hs.284813 NM_033130 ENSG00000142512 SIGLEC10 PRO940|SIGLEC-10|SLG2 sialic acid binding Ig like lectin 10 protein-coding 184.5-58 chr4 157784847 157785200 + 1 NA Intergenic L1MCa|LINE|L1 212533 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 182.25-34 chr22 45658259 45658506 + 1 NA Intergenic L1ME1|LINE|L1 -13416 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 148.5-73 chr4 89315677 89315930 + 1 NA Intergenic Intergenic -8003 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 166.5-43 chr17 3571210 3571456 + 1 NA intron (NM_018727, intron 15 of 15) CpG -13521 NM_001258205 162514 Hs.446255 NM_145068 ENSG00000167723 TRPV3 FNEPPK2|OLMS|VRL3 transient receptor potential cation channel subfamily V member 3 protein-coding 305.5-13 chr22 23634609 23635146 + 1 NA Intergenic AluSg4|SINE|Alu -2556 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 261.75-23 chr5 149936331 149936690 + 1 NA intron (NM_000440, intron 1 of 21) intron (NM_000440, intron 1 of 21) -3533 NR_110534 644762 Hs.730366 NR_110534 LOC644762 - mitochondrial fission factor pseudogene pseudo 180.5-43 chr2 138335155 138335540 + 1 NA Intergenic LTR33A_|LTR|ERVL -166423 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 169.5-34 chr17 33223508 33223679 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 69395 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 222.75-32 chr4 113170387 113170660 + 1 NA intron (NM_001354241, intron 2 of 45) Charlie29a|DNA|hAT-Charlie 18241 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 166.25-5 chr10 42877049 42877355 + 1 NA Intergenic MLT2B1|LTR|ERVL 5681 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 125.25-70 chr5 163560005 163560203 + 1 NA Intergenic L1MB7|LINE|L1 54485 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 199.25-18 chr17 57427978 57428450 + 1 NA intron (NM_001322250, intron 6 of 13) MER5B|DNA|hAT-Charlie 95383 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 145.75-24 chr18 771678 771858 + 1 NA intron (NM_005433, intron 1 of 11) AluJb|SINE|Alu 40474 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 169.75-64 chr8 129824661 129825025 + 1 NA Intergenic Intergenic -38219 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 221.75-17 chr3 54640586 54641037 + 1 NA promoter-TSS (NR_027122) promoter-TSS (NR_027122) -954 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 236.25-5 chr11 76568040 76568306 + 1 NA Intergenic L1MC3|LINE|L1 101765 NM_001370188 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 339.25-2 chr2 183294081 183294732 + 1 NA Intergenic L1ME3|LINE|L1 169963 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 140.5-112 chr8 122966995 122967209 + 1 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 58670 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 123.25-64 chr5 36875962 36876100 + 1 NA promoter-TSS (NM_133433) promoter-TSS (NM_133433) 663 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 184.5-8 chr10 20717739 20718086 + 1 NA Intergenic AluSz|SINE|Alu 165942 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 138.75-69 chr6 168524557 168524753 + 1 NA intron (NM_001166412, intron 2 of 12) intron (NM_001166412, intron 2 of 12) 83471 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 176.5-70 chr4 111911080 111911335 + 1 NA Intergenic Intergenic -234247 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 141.5-32 chr14 71817125 71817417 + 1 NA Intergenic MER4D|LTR|ERV1 -114900 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 137.5-88 chr4 105380838 105381039 + 1 NA intron (NM_176869, intron 10 of 11) L1ME3Cz|LINE|L1 -28057 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 123.5-50 chr2 78644923 78645101 + 1 NA Intergenic MER44B|DNA|TcMar-Tigger 99481 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 165.5-55 chr21 10692720 10692947 + 1 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 171319 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 114.5-72 chr3 185727704 185727847 + 1 NA intron (NR_126326, intron 5 of 7) intron (NR_126326, intron 5 of 7) 14523 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 176.25-27 chr16 77883815 77884014 + 1 NA intron (NM_020927, intron 6 of 8) intron (NM_020927, intron 6 of 8) 95350 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 360.25-3 chr6 159068360 159068828 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -23442 NM_152133 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 141.25-2 chr1 109547965 109548257 + 1 NA promoter-TSS (NM_006496) promoter-TSS (NM_006496) -504 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 140.5-46 chr2 117434908 117435128 + 1 NA Intergenic Intergenic -379673 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 113.25-91 chr4 53146789 53146962 + 1 NA intron (NM_152540, intron 4 of 8) MER44A|DNA|TcMar-Tigger 219186 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 170.75-48 chr3 37477817 37478110 + 1 NA intron (NM_002207, intron 3 of 27) intron (NM_002207, intron 3 of 27) 25822 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 139.5-83 chr5 112701165 112701448 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -6192 NM_001127511 324 Hs.158932 NM_000038 ENSG00000134982 APC BTPS2|DP2|DP2.5|DP3|GS|PPP1R46 APC regulator of WNT signaling pathway protein-coding 147.5-6 chr1 174167788 174168039 + 1 NA intron (NM_001366445, intron 1 of 13) intron (NM_001366445, intron 1 of 13) 8393 NR_158982 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 116.5-71 chr2 202013224 202013347 + 1 NA Intergenic Intergenic -21302 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 175.5-89 chr9 128029624 128029820 + 1 NA Intergenic AluJb|SINE|Alu 37598 NM_197956 203245 Hs.373606 NM_197956 ENSG00000171169 NAIF1 C9orf90|bA379C10.2 nuclear apoptosis inducing factor 1 protein-coding 147.25-3 chr10 30437817 30437994 + 1 NA intron (NM_005204, intron 2 of 8) intron (NM_005204, intron 2 of 8) 3259 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 231.5-28 chr3 96235848 96236130 + 1 NA Intergenic L2a|LINE|L2 -123975 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 245.75 chr1 184224709 184225060 + 1 NA Intergenic Intergenic -162145 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 249.5-4 chr12 97270681 97271014 + 1 NA Intergenic L2c|LINE|L2 -191929 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 129.5-90 chr8 121746767 121746944 + 1 NA Intergenic L1ME2|LINE|L1 -105415 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 177.25-23 chr2 75672793 75673005 + 1 NA intron (NM_001201334, intron 13 of 16) intron (NM_001201334, intron 13 of 16) 26116 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 167.5-67 chr5 85292758 85292959 + 1 NA Intergenic Intergenic -907978 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 160.5-14 chr13 21987429 21987836 + 1 NA Intergenic Intergenic -109472 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 223.5-46 chr20 55181626 55181972 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -241244 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 159.5-40 chr2 51618964 51619226 + 1 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 586494 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 125.25-60 chr4 87848460 87848735 + 1 NA Intergenic Intergenic 13894 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 141.25-11 chr10 81586821 81587103 + 1 NA Intergenic Intergenic -288232 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 150.75-82 chr9 107247630 107247896 + 1 NA Intergenic Intergenic -35516 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 117.25-59 chr3 125261453 125261718 + 1 NA intron (NM_001348434, intron 6 of 7) L2|LINE|L2 -48820 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 204.75-29 chr2 192401307 192401559 + 1 NA Intergenic Intergenic -206500 NM_016192 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 167.5-53 chr3 75189360 75189692 + 1 NA Intergenic Intergenic -24950 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 120.5-80 chr4 135322822 135323060 + 1 NA Intergenic L1PA16|LINE|L1 -199382 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 212.5-16 chr16 13100349 13100706 + 1 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 198929 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 121.5-63 chr2 83695366 83695602 + 1 NA Intergenic LTR1C|LTR|ERV1 172670 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 359.25-7 chr4 49119789 49120525 + 1 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 133515 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 171.5-14 chr11 80867971 80868304 + 1 NA Intergenic MER5B|DNA|hAT-Charlie -105334 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 138.25-88 chr8 88292073 88292356 + 1 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 35269 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 186.25-51 chr8 3867225 3867447 + 1 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1127578 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 155.5-36 chr16 8140111 8140481 + 1 NA Intergenic L1MB4|LINE|L1 449542 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 181.25-24 chr19 29990817 29990998 + 1 NA intron (NM_001252641, intron 4 of 10) L1ME1|LINE|L1 48668 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 186.5-52 chr6 73007245 73007554 + 1 NA intron (NM_001160132, intron 2 of 13) MIR|SINE|MIR -39646 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 126.75-46 chr2 177722784 177722924 + 1 NA intron (NM_001077197, intron 13 of 20) intron (NM_001077197, intron 13 of 20) 49532 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 164.5-74 chr5 168728737 168729001 + 1 NA intron (NM_003062, intron 20 of 35) AluJb|SINE|Alu 21942 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 118.5-52 chr18 39643705 39643922 + 1 NA intron (NR_024391, intron 2 of 3) L1ME1|LINE|L1 -21638 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 131.25-89 chr8 141915203 141915483 + 1 NA Intergenic L1ME3D|LINE|L1 -129030 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 235.25-19 chr4 88690011 88690557 + 1 NA intron (NM_001271602, intron 22 of 24) intron (NM_001271602, intron 22 of 24) 7545 NM_153757 266812 Hs.12554 NM_153757 ENSG00000177432 NAP1L5 DRLM nucleosome assembly protein 1 like 5 protein-coding 192.5-21 chr15 59516390 59516659 + 1 NA intron (NM_152450, intron 7 of 8) MLT1J|LTR|ERVL-MaLR 78338 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 139.5-51 chr20 36261609 36261849 + 1 NA Intergenic Intergenic 25251 NM_001271874 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 209.5-49 chr8 113258919 113259315 + 1 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 118035 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 133.25-87 chr8 139272428 139272656 + 1 NA Intergenic Intergenic -358501 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 141.25-66 chr6 140096588 140096919 + 1 NA Intergenic Intergenic -105492 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 214.25-12 chr13 54916563 54916952 + 1 NA Intergenic L1PA15-16|LINE|L1 -257697 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 187.75-36 chr3 111538074 111538339 + 1 NA Intergenic Intergenic -3991 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 151.75-21 chr12 88929387 88929569 + 1 NA Intergenic L1M5|LINE|L1 90214 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 138.75-32 chr18 62969784 62969945 + 1 NA intron (NM_194449, intron 14 of 16) L1MEc|LINE|L1 254323 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 183.5-54 chr4 86759960 86760251 + 1 NA intron (NM_080685, intron 23 of 47) intron (NM_080685, intron 23 of 47) 89279 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 189.5-12 chr13 48981537 48981741 + 1 NA intron (NR_103528, intron 1 of 25) MIRb|SINE|MIR 4977 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 135.5-26 chr13 57807566 57807714 + 1 NA Intergenic L1MA6|LINE|L1 175896 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 185.75-13 chr11 29012143 29012533 + 1 NA Intergenic L1MA10|LINE|L1 -534790 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 130.75-11 chr11 41244402 41244609 + 1 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 215131 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 237.25-32 chr9 29285204 29285560 + 1 NA Intergenic Intergenic -71781 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 224.5-9 chr10 73520756 73521160 + 1 NA exon (NM_152586, exon 16 of 22) exon (NM_152586, exon 16 of 22) -24934 NM_001142354 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 191.25-57 chr7 80470272 80470783 + 1 NA intron (NM_001102386, intron 5 of 7) intron (NM_001102386, intron 5 of 7) 41537 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 114.25-17 chr11 30335594 30335766 + 1 NA intron (NM_152316, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 12576 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 113.5-63 chr2 123491959 123492112 + 1 NA Intergenic Intergenic -418554 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 129.5-19 chr11 119853575 119853743 + 1 NA Intergenic AluJb|SINE|Alu 124076 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 185.5-60 chr5 59167526 59167711 + 1 NA intron (NM_001364602, intron 5 of 5) intron (NM_001364602, intron 5 of 5) 108497 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 319.5-17 chr7 85679317 85679659 + 1 NA Intergenic L1PA6|LINE|L1 258366 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 126.25-70 chr5 28600386 28600527 + 1 NA Intergenic Intergenic -312791 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 211.5-21 chr19 47592160 47592522 + 1 NA Intergenic Intergenic -15855 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 154.25-69 chr9 94968767 94968943 + 1 NA intron (NM_032823, intron 8 of 14) intron (NM_032823, intron 8 of 14) -23301 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 118.5-49 chr18 8587312 8587452 + 1 NA Intergenic Intergenic -22063 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 194.5-64 chr6 144159715 144160101 + 1 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 9391 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 157.5-13 chr11 91717805 91718102 + 1 NA Intergenic Intergenic -507081 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 237.5-25 chr22 35513754 35514142 + 1 NA Intergenic L2a|LINE|L2 -26546 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 128.5-84 chr6 50529070 50529292 + 1 NA Intergenic L2|LINE|L2 -184363 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 205.5-29 chr2 226022278 226022688 + 1 NA Intergenic Intergenic -120311 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 159.75-30 chr2 200715790 200716089 + 1 NA intron (NR_037886, intron 2 of 2) L1ME4a|LINE|L1 19238 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 140.5-92 chr6 36691330 36691503 + 1 NA Intergenic ERVL-E-int|LTR|ERVL -6410 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 213.75-53 chr8 137110490 137110795 + 1 NA Intergenic Intergenic 302946 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 139.75-63 chr6 120449137 120449351 + 1 NA Intergenic Intergenic 434065 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 119.75-17 chr11 29365915 29366060 + 1 NA Intergenic Intergenic -228426 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 139.5-34 chr17 31075294 31075527 + 1 NA Intergenic LTR16A2|LTR|ERVL -16301 NR_146737 646030 NR_146737 LOC646030 - leucine rich repeat containing 37B pseudogene pseudo 156.5-42 chr20 57112694 57112998 + 1 NA Intergenic Intergenic -100850 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 209.25-2 chr11 22745565 22745982 + 1 NA intron (NM_005256, intron 4 of 6) L1PA16|LINE|L1 70999 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 190.75-29 chr2 8649057 8649423 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 32621 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 253.5-12 chr12 85772458 85772855 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR 63753 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 149.75 chr1 54824491 54824741 + 1 NA intron (NM_001110533, intron 9 of 9) L1M2|LINE|L1 18553 NM_001110533 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 112.75-52 chr2 157812908 157813087 + 1 NA intron (NM_001111067, intron 2 of 10) intron (NM_001111067, intron 2 of 10) 25633 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 157.25-58 chr7 43030719 43031064 + 1 NA Intergenic L1M6|LINE|L1 -81756 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 245.25-32 chr9 6836945 6837417 + 1 NA intron (NR_148680, intron 4 of 21) AluJo|SINE|Alu 79831 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 158.5-71 chr3 114370056 114370303 + 1 NA intron (NR_038993, intron 6 of 8) intron (NR_038993, intron 6 of 8) 13463 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 194.5-76 chr8 110324198 110324511 + 1 NA Intergenic L1ME4a|LINE|L1 -348583 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 129.75-44 chr2 155889876 155890100 + 1 NA Intergenic Intergenic 364943 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 213.25-6 chr10 67550974 67551387 + 1 NA intron (NM_001127384, intron 3 of 17) LTR1A2|LTR|ERV1 114480 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 241.5-38 chr8 25999359 25999686 + 1 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 45891 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 115.25-22 chr11 115049303 115049490 + 1 NA Intergenic Intergenic -284181 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 224.5-2 chr1 95202366 95202664 + 1 NA intron (NR_125948, intron 3 of 4) intron (NR_125948, intron 3 of 4) 31467 NR_125948 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 319.75-7 chr8 37763021 37763400 + 1 NA intron (NM_001349349, intron 1 of 4) CpG 565 NM_001349348 11212 Hs.304792 NM_007198 ENSG00000147471 PLPBP EPVB6D|PROSC pyridoxal phosphate binding protein protein-coding 228.75-23 chr2 76439006 76439371 + 1 NA Intergenic L1ME3A|LINE|L1 -546777 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 135.5-36 chr14 83617825 83618047 + 1 NA Intergenic Intergenic 975304 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 144.75 chr1 10070336 10070523 + 1 NA intron (NM_006048, intron 1 of 26) L1ME3A|LINE|L1 37471 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 139.25-91 chrX 116883931 116884259 + 1 NA Intergenic AluSx3|SINE|Alu -66235 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 216.5-37 chr7 20908427 20908711 + 1 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 73138 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 305.75-11 chr5 35103633 35103938 + 1 NA intron (NR_037910, intron 1 of 7) intron (NR_037910, intron 1 of 7) 14337 NM_001204314 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 124.25-48 chr2 81646415 81646630 + 1 NA Intergenic Intergenic -179576 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 196.5-56 chr5 11321543 11321805 + 1 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 267243 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 118.5-24 chr11 23876134 23876263 + 1 NA Intergenic Arthur1|DNA|hAT-Tip100 -457008 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 179.5-7 chr1 81339615 81339919 + 1 NA intron (NM_001366003, intron 2 of 27) L2c|LINE|L2 33372 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 127.5-43 chr16 73420607 73420803 + 1 NA non-coding (NR_038234, exon 3 of 3) non-coding (NR_038234, exon 3 of 3) 33900 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 137.5-19 chr11 58118301 58118470 + 1 NA TTS (NM_001005211) TTS (NM_001005211) 1059 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 144.75-81 chr7 83283611 83283834 + 1 NA Intergenic Tigger3b|DNA|TcMar-Tigger -120838 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 118.5-91 chr6 37853874 37854026 + 1 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 34223 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 263.5 chr1 100168742 100169068 + 1 NA intron (NM_001256387, intron 1 of 8) L1M5|LINE|L1 9368 NM_001256385 127495 Hs.44277 NM_144620 ENSG00000122477 LRRC39 - leucine rich repeat containing 39 protein-coding 119.75-70 chr5 79686115 79686424 + 1 NA 3' UTR (NM_173797, exon 16 of 16) 3' UTR (NM_173797, exon 16 of 16) -3567 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 239.5-26 chr7 16883684 16883966 + 1 NA Intergenic Intergenic -1842 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 252.75-26 chr5 155092351 155092927 + 1 NA Intergenic Intergenic 78884 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 136.5-107 chr8 122012535 122012764 + 1 NA Intergenic L1PA15|LINE|L1 -371209 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 237.75 chr1 60185534 60185972 + 1 NA Intergenic THE1B|LTR|ERVL-MaLR -111983 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 154.5-81 chrX 80288671 80288964 + 1 NA intron (NR_110646, intron 5 of 5) intron (NR_110646, intron 5 of 5) 46501 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 123.75-19 chr10 121262404 121262652 + 1 NA Intergenic Intergenic 268786 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 128.5-78 chr5 137721917 137722160 + 1 NA promoter-TSS (NM_001257194) promoter-TSS (NM_001257194) -728 NM_001257194 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 201.5-4 chr1 158356981 158357217 + 1 NA 3' UTR (NM_001042584, exon 6 of 6) 3' UTR (NM_001042584, exon 6 of 6) 3205 NM_001185115 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 119.75 chr1 38546263 38546656 + 1 NA Intergenic Intergenic 71263 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 267.75-19 chr8 126149279 126149668 + 1 NA Intergenic L1PA16|LINE|L1 -176022 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 135.5-40 chr16 26788462 26788760 + 1 NA Intergenic L1ME4b|LINE|L1 -278316 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 170.5-67 chr5 92640497 92640800 + 1 NA Intergenic Intergenic 930695 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 169.5-32 chr16 86198279 86198518 + 1 NA intron (NR_103859, intron 1 of 1) intron (NR_103859, intron 1 of 1) 2217 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 120.5-64 chr22 43898186 43898337 + 1 NA Intergenic Intergenic -6248 NM_001177675 150379 Hs.248086 NM_138814 ENSG00000100341 PNPLA5 GS2L|dJ388M5|dJ388M5.4 patatin like phospholipase domain containing 5 protein-coding 194.5-28 chr18 61140136 61140406 + 1 NA Intergenic Intergenic -193159 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 195.5-10 chr10 32682275 32682659 + 1 NA intron (NM_001321115, intron 22 of 43) L1PA15|LINE|L1 219005 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 142.75-81 chr7 67774838 67775020 + 1 NA Intergenic Intergenic -245324 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 159.75-49 chr4 167713939 167714142 + 1 NA Intergenic Intergenic -378497 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 159.5-36 chr18 75604135 75604345 + 1 NA Intergenic L1MB8|LINE|L1 108163 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 144.75-90 chr8 138107994 138108217 + 1 NA Intergenic Intergenic -24560 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 251.75-16 chr7 139061375 139061732 + 1 NA intron (NM_020119, intron 8 of 12) intron (NM_020119, intron 8 of 12) -17396 NR_162108 113218503 NR_162108 MIR10399 - microRNA 10399 ncRNA 113.25-51 chr16 86030502 86030628 + 1 NA Intergenic MIRb|SINE|MIR 112218 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 196.25-40 chr21 16977396 16977717 + 1 NA Intergenic MIRb|SINE|MIR 387319 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 223.5-25 chr14 58678103 58678330 + 1 NA Intergenic Intergenic 39379 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 181.75-35 chr6 34798247 34798541 + 1 NA intron (NM_017754, intron 1 of 20) L1ME3A|LINE|L1 6311 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 154.75-51 chr5 18562372 18562560 + 1 NA Intergenic Intergenic 755192 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 265.5-12 chr15 68299549 68299939 + 1 NA 3' UTR (NM_001004439, exon 30 of 30) 3' UTR (NM_001004439, exon 30 of 30) 21999 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 200.5-31 chr2 16681053 16681310 + 1 NA Intergenic Intergenic -15347 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 128.5-21 chr14 47503061 47503237 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -159903 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 210.25-30 chr3 7504258 7504674 + 1 NA intron (NM_000844, intron 7 of 9) MSTD|LTR|ERVL-MaLR 30818 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 209.25 chr10 54800746 54801194 + 1 NA 5' UTR (NM_001354420, exon 1 of 34) 5' UTR (NM_001354420, exon 1 of 34) 261 NM_001142763 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 132.5-12 chr11 4026916 4027100 + 1 NA intron (NM_001277962, intron 3 of 12) MER21C|LTR|ERVL -67677 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 215.5-12 chr12 59621122 59621491 + 1 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) 25277 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 183.5-52 chr3 186232648 186232898 + 1 NA intron (NM_001346, intron 20 of 24) intron (NM_001346, intron 20 of 24) -123684 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 242.75-6 chr11 130743851 130744201 + 1 NA Intergenic AluJr|SINE|Alu 71070 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 156.75-78 chr5 85252474 85252827 + 1 NA Intergenic Intergenic -867770 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 256.25-8 chr19 40231066 40231414 + 1 NA 3' UTR (NM_001243028, exon 13 of 13) 3' UTR (NM_001243028, exon 13 of 13) -4551 NM_024877 79935 Hs.631603 NM_024877 ENSG00000105219 CNTD2 CCNP cyclin N-terminal domain containing 2 protein-coding 240.5-20 chr15 26004469 26004930 + 1 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 102339 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 204.5-50 chr5 130988203 130988555 + 1 NA Intergenic Intergenic 176877 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 157.5-3 chr1 102314781 102315038 + 1 NA Intergenic L1MC1|LINE|L1 -317675 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 184.5-42 chr2 52574809 52575264 + 1 NA Intergenic L1PA15-16|LINE|L1 127579 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 184.75-59 chr9 36756457 36756675 + 1 NA Intergenic Intergenic 67033 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 191.5-22 chr14 50288156 50288392 + 1 NA intron (NM_024884, intron 4 of 9) LTR54|LTR|ERV1 11672 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 140.5-87 chr5 148785523 148785694 + 1 NA Intergenic HAL1|LINE|L1 -40985 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 301.75 chr1 227145312 227145814 + 1 NA exon (NM_001366010, exon 8 of 35) exon (NM_001366010, exon 8 of 35) 172929 NM_001366010 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 144.25-76 chr8 41601453 41601819 + 1 NA intron (NM_178819, intron 2 of 12) intron (NM_178819, intron 2 of 12) 23120 NM_001363197 137964 Hs.355753 NM_178819 ENSG00000158669 GPAT4 1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7 glycerol-3-phosphate acyltransferase 4 protein-coding 158.75-36 chr2 188678729 188678965 + 1 NA Intergenic Intergenic 111276 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 148.5-58 chr3 54755444 54755629 + 1 NA intron (NM_018398, intron 12 of 37) intron (NM_018398, intron 12 of 37) -115679 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 155.75-16 chr14 59937648 59938000 + 1 NA intron (NR_075071, intron 6 of 32) intron (NR_075071, intron 6 of 32) 18111 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 159.25-68 chr8 144788511 144788709 + 1 NA Intergenic Intergenic -1265 NM_030580 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 159.5-15 chr11 95982808 95982978 + 1 NA intron (NM_032427, intron 4 of 4) Tigger3b|DNA|TcMar-Tigger -58686 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 132.75-90 chr7 41865689 41865821 + 1 NA Intergenic LTR28C|LTR|ERV1 -162665 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 216.5-20 chr22 45547941 45548356 + 1 NA intron (NM_006487, intron 12 of 14) AluJb|SINE|Alu 45265 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 231.25-29 chr4 89475773 89476095 + 1 NA Intergenic Intergenic -168134 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 231.25-32 chr6 42823910 42824421 + 1 NA intron (NM_001318819, intron 6 of 13) AluSc5|SINE|Alu 3109 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 224.25 chr1 31513693 31514080 + 1 NA Intergenic MER52C|LTR|ERV1 -4549 NR_027085 284551 Hs.658659 NR_027085 LINC01226 - long intergenic non-protein coding RNA 1226 ncRNA 204.75-32 chr3 44825212 44825529 + 1 NA intron (NM_020242, intron 20 of 34).2 intron (NM_020242, intron 20 of 34).2 -36518 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 158.25-52 chr5 102223519 102223827 + 1 NA Intergenic Intergenic 72611 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 167.75-46 chr3 151251109 151251413 + 1 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) -2270 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 172.5-80 chr7 84333359 84333594 + 1 NA Intergenic Intergenic -138687 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 180.25-48 chr4 88959918 88960254 + 1 NA intron (NM_014883, intron 4 of 23) intron (NM_014883, intron 4 of 23) 97099 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 200.75-34 chr6 12866834 12867085 + 1 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -90397 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 132.5-25 chr14 51313446 51313703 + 1 NA intron (NR_145423, intron 1 of 1) L1PA3|LINE|L1 14811 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 239.25-2 chr1 81977257 81977543 + 1 NA intron (NM_001366002, intron 16 of 20) intron (NM_001366002, intron 16 of 20) 174947 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 202.25-5 chr1 184199549 184199904 + 1 NA Intergenic Intergenic 147996 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 219.5-15 chr14 73109940 73110242 + 1 NA intron (NM_021239, intron 14 of 18) AluSz|SINE|Alu -26416 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 226.25 chr1 33629306 33629737 + 1 NA intron (NM_052896, intron 32 of 69) intron (NM_052896, intron 32 of 69) 156876 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 132.75-44 chr15 90663510 90663672 + 1 NA intron (NR_120371, intron 2 of 2) intron (NR_120371, intron 2 of 2) 3357 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 192.75-29 chr3 136284513 136284777 + 1 NA intron (NM_000532, intron 6 of 14) L1M5|LINE|L1 34305 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 255.75-5 chr14 53475648 53476245 + 1 NA Intergenic Intergenic 322592 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 155.5-44 chr18 5113506 5113666 + 1 NA Intergenic L1MA3|LINE|L1 32404 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 122.25-87 chr7 84639744 84640005 + 1 NA Intergenic Intergenic 107398 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 121.25-19 chr14 46094907 46095103 + 1 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 30846 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 119.5-10 chr10 19622098 19622302 + 1 NA intron (NM_001142308, intron 36 of 39) L1MC4|LINE|L1 106350 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 274.5-38 chr9 106064736 106065383 + 1 NA Intergenic HAL1|LINE|L1 370518 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 116.5-81 chr3 79896960 79897122 + 1 NA Intergenic L3|LINE|CR1 -129043 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 185.5 chr1 62132004 62132242 + 1 NA intron (NM_001350145, intron 41 of 43) AluSz|SINE|Alu -53267 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 163.5-25 chr12 85742955 85743166 + 1 NA Intergenic L1MA1|LINE|L1 93349 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 177.5-19 chr15 60503408 60503670 + 1 NA exon (NM_002943, exon 7 of 11) exon (NM_002943, exon 7 of 11) 24361 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 220.5-12 chr12 37304303 37304712 + 1 NA Intergenic ALR/Alpha|Satellite|centr -1012267 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 119.5-98 chr5 39189350 39189580 + 1 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 30098 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 117.25-58 chr3 111685463 111685711 + 1 NA intron (NM_001185106, intron 1 of 4) intron (NM_001185106, intron 1 of 4) -8154 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 155.75-47 chr4 164874927 164875113 + 1 NA Intergenic MamRTE1|LINE|RTE-BovB -2158 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 115.75-11 chr10 52187294 52187425 + 1 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 126769 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 150.75-47 chr3 96537745 96538068 + 1 NA Intergenic L1MC3|LINE|L1 177942 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 137.75-48 chr2 176318125 176318336 + 1 NA intron (NM_001319097, intron 3 of 9) intron (NM_001319097, intron 3 of 9) 48788 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 156.75-94 chr9 89597082 89597253 + 1 NA Intergenic Intergenic -7845 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 118.75-46 chr2 13839163 13839454 + 1 NA Intergenic Intergenic 561650 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 128.5-72 chr5 13439519 13439709 + 1 NA Intergenic Intergenic -406728 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 134.75-15 chr12 12516522 12516696 + 1 NA intron (NM_030640, intron 3 of 6).2 intron (NM_030640, intron 3 of 6).2 46254 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 120.5 chr1 84340293 84340483 + 1 NA intron (NM_001134663, intron 3 of 3) L1MB4|LINE|L1 37737 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 229.5-14 chr11 127857072 127857368 + 1 NA Intergenic Intergenic -351546 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 251.5-6 chr12 24758707 24759039 + 1 NA Intergenic Intergenic 143349 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 160.5-73 chr7 113060195 113060381 + 1 NA Intergenic AluSq2|SINE|Alu 26050 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 209.25-29 chr4 67822639 67823020 + 1 NA intron (NM_004262, intron 9 of 9) intron (NM_004262, intron 9 of 9) 61173 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 198.25-6 chr11 95912609 95912893 + 1 NA intron (NM_016156, intron 1 of 14) intron (NM_016156, intron 1 of 14) 11356 NM_201278 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 138.25-20 chr12 61824376 61824624 + 1 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 368339 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 144.75-7 chr1 232813825 232814070 + 1 NA Intergenic MIRc|SINE|MIR 9055 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 212.5-41 chr4 84637240 84637523 + 1 NA intron (NM_001263, intron 8 of 12) MSTA|LTR|ERVL-MaLR 54254 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 214.5 chr1 36961428 36961823 + 1 NA intron (NM_000831, intron 1 of 15) MIR3|SINE|MIR 72890 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 255.75-8 chr15 63199845 63200276 + 1 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 10454 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 257.5-5 chr11 39182107 39182408 + 1 NA Intergenic Intergenic 533399 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 148.25-23 chr15 71329912 71330283 + 1 NA intron (NM_024817, intron 5 of 16) AluJb|SINE|Alu -141038 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 119.75-24 chr14 46235187 46235443 + 1 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 171156 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 117.75-24 chr15 51425099 51425246 + 1 NA Intergenic MER4-int|LTR|ERV1 47926 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 381.25 chr2 34404270 34404887 + 1 NA Intergenic Charlie11|DNA|hAT-Charlie -272979 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 136.5-29 chr13 56144009 56144183 + 1 NA Intergenic AluSz|SINE|Alu 969642 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 158.25-40 chr4 52028187 52028404 + 1 NA intron (NM_000232, intron 4 of 5) MIR3|SINE|MIR -7932 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 140.75-36 chr2 187937186 187937458 + 1 NA Intergenic Intergenic 350369 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 166.25-14 chr13 92127319 92127758 + 1 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 224669 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 125.25-73 chr6 37242490 37242644 + 1 NA intron (NM_145316, intron 1 of 3) intron (NM_145316, intron 1 of 3) 15032 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 193.5-44 chr3 112063160 112063443 + 1 NA intron (NR_026734, intron 10 of 16) intron (NR_026734, intron 10 of 16) 20323 NM_001366279 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 132.75-83 chr6 20369140 20369289 + 1 NA Intergenic Intergenic -32665 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 136.25-58 chr3 153765462 153765609 + 1 NA Intergenic LTR33|LTR|ERVL -3009 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 232.5-28 chr3 192040541 192041008 + 1 NA Intergenic Intergenic -197856 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 222.75-42 chr6 160524903 160525277 + 1 NA Intergenic FRAM|SINE|Alu -13966 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 171.5-83 chr6 135441725 135441980 + 1 NA intron (NM_017651, intron 13 of 27) intron (NM_017651, intron 13 of 27) 55888 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 151.25-22 chr15 78351114 78351353 + 1 NA Intergenic Intergenic 10880 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 130.5-52 chr20 2991853 2992116 + 1 NA intron (NM_080841, intron 8 of 22) ERVL-E-int|LTR|ERVL -51638 NM_178331 2797 Hs.129715 NM_001501 ENSG00000125787 GNRH2 GnRH-II|LH-RHII gonadotropin releasing hormone 2 protein-coding 225.25-34 chr8 110059484 110059767 + 1 NA Intergenic Intergenic -83854 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 125.5-115 chr6 155207325 155207566 + 1 NA intron (NM_012454, intron 13 of 25) intron (NM_012454, intron 13 of 25) -9521 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 188.5-41 chr4 188160789 188161072 + 1 NA Intergenic Intergenic 21489 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 145.25-79 chr8 13220774 13221033 + 1 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) 55618 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 120.75-11 chr10 130613484 130613645 + 1 NA Intergenic L1MEf|LINE|L1 349104 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 125.75-61 chr5 102240772 102241083 + 1 NA intron (NM_180991, intron 10 of 12) intron (NM_180991, intron 10 of 12) 55357 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 162.5-97 chr8 144034743 144035086 + 1 NA intron (NM_198572, intron 1 of 4) AluSx3|SINE|Alu -14484 NR_158554 392275 NR_158554 SMPD5 MA-nSMase sphingomyelin phosphodiesterase 5 pseudo 135.5-104 chr8 94940033 94940179 + 1 NA exon (NM_033285, exon 3 of 4) exon (NM_033285, exon 3 of 4) 9272 NM_033285 94241 Hs.492261 NM_033285 ENSG00000164938 TP53INP1 SIP|TP53DINP1|TP53INP1A|TP53INP1B|Teap|p53DINP1 tumor protein p53 inducible nuclear protein 1 protein-coding 158.5-86 chr6 38918028 38918245 + 1 NA exon (NM_001206927, exon 70 of 93) exon (NM_001206927, exon 70 of 93) 34971 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 140.75-11 chr11 118955968 118956191 + 1 NA promoter-TSS (NM_006760) promoter-TSS (NM_006760) -219 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 221.5-38 chr6 27808777 27809179 + 1 NA TTS (NM_003509) TTS (NM_003509) 779 NM_003509 8329 Hs.534035 NM_003509 ENSG00000196747 HIST1H2AI H2A/c|H2AFC histone cluster 1 H2A family member i protein-coding 238.25-14 chr2 62611549 62611892 + 1 NA Intergenic MARNA|DNA|TcMar-Mariner -62158 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 171.25-9 chr12 1330859 1331057 + 1 NA intron (NR_027948, intron 15 of 19) L1MEi|LINE|L1 -169533 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 144.25-58 chr4 176023208 176023465 + 1 NA Intergenic Intergenic -20645 NM_001261447 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 165.25-36 chr3 21990635 21991040 + 1 NA Intergenic Intergenic 33698 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 176.25-26 chr16 67554997 67555362 + 1 NA Intergenic AluSp|SINE|Alu 7130 NR_158165 107984813 Hs.385760 NR_158165 LOC107984813 - uncharacterized LOC107984813 ncRNA 266.25-4 chr1 211888824 211889210 + 1 NA Intergenic AluSq|SINE|Alu 58056 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 114.25-77 chr4 52179406 52179683 + 1 NA Intergenic L1MC3|LINE|L1 128240 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 202.5-17 chr2 26958593 26958818 + 1 NA Intergenic HAL1|LINE|L1 -11932 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 194.75-9 chr11 129506026 129506291 + 1 NA Intergenic L1MD1|LINE|L1 111111 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 249.5-13 chr2 191007839 191008223 + 1 NA intron (NM_007315, intron 4 of 24) intron (NM_007315, intron 4 of 24) 6219 NM_139266 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 173.5-27 chr14 72503115 72503377 + 1 NA intron (NM_001370280, intron 13 of 17) MLT1A0|LTR|ERVL-MaLR -13574 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 130.25-11 chr10 15632949 15633268 + 1 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 86814 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 133.5-27 chr14 59686864 59687052 + 1 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -39938 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 148.75-51 chr5 8765554 8765752 + 1 NA Intergenic LTR41B|LTR|ERVL -74079 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 121.25-24 chr15 71706913 71707079 + 1 NA intron (NM_001286429, intron 2 of 11) intron (NM_001286429, intron 2 of 11) -15457 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 240.25-22 chr4 39382967 39383340 + 1 NA Intergenic L1MA2|LINE|L1 -16791 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 202.25-18 chr2 48848592 48848934 + 1 NA Intergenic Intergenic -93039 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 199.5-27 chr2 123768874 123769119 + 1 NA Intergenic Intergenic 256178 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 127.5-129 chr9 85173622 85173800 + 1 NA Intergenic Intergenic 467810 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 159.5-58 chr3 94893568 94893871 + 1 NA Intergenic LTR24|LTR|ERV1 -44544 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 189.75-22 chr2 140027943 140028208 + 1 NA Intergenic Intergenic 558610 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 184.5-24 chr14 37195085 37195594 + 1 NA Intergenic MLT2D|LTR|ERVL -2574 NM_001195297 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 180.25-68 chr9 36202139 36202339 + 1 NA intron (NM_001076677, intron 3 of 5) intron (NM_001076677, intron 3 of 5) 11318 NM_001311205 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 136.5-89 chr5 32212308 32212491 + 1 NA Intergenic L1MA1|LINE|L1 -38080 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 197.25-17 chr11 109952288 109952521 + 1 NA Intergenic MER4A|LTR|ERV1 -140988 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 163.75-63 chr6 107540865 107541054 + 1 NA intron (NM_018013, intron 4 of 6) intron (NM_018013, intron 4 of 6) 50842 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 176.5-32 chr15 72034579 72034802 + 1 NA intron (NM_006901, intron 2 of 41) intron (NM_006901, intron 2 of 41) -79568 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 178.5-54 chr4 59751719 59751992 + 1 NA Intergenic Intergenic 738282 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 142.75-27 chr14 64626945 64627194 + 1 NA Intergenic L2c|LINE|L2 77108 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 159.25-56 chr5 111751436 111751729 + 1 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) 4669 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 152.5-83 chr4 83618773 83618987 + 1 NA Intergenic Intergenic 82772 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 145.25-49 chr22 33329689 33329984 + 1 NA intron (NM_133642, intron 10 of 14) Tigger15a|DNA|TcMar-Tigger 106833 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 144.75-53 chr3 40721840 40722050 + 1 NA Intergenic LTR33|LTR|ERVL 196985 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 161.75-33 chr3 73722122 73722552 + 1 NA Intergenic MER1B|DNA|hAT-Charlie -86907 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 135.25-11 chr10 63519573 63519787 + 1 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -1721 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 253.25-15 chr2 67525892 67526252 + 1 NA Intergenic Intergenic 128739 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 164.75-42 chr3 83764027 83764228 + 1 NA Intergenic Intergenic 1105448 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 182.25-38 chr4 39604931 39605338 + 1 NA exon (NM_001317897, exon 2 of 5) exon (NM_001317897, exon 2 of 5) 21987 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 187.5-13 chr11 82699909 82700125 + 1 NA Intergenic Intergenic 33847 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 188.5-47 chr5 181040140 181040392 + 1 NA promoter-TSS (NM_152547) promoter-TSS (NM_152547) 0 NM_001308245 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 146.75-55 chr6 129181989 129182223 + 1 NA intron (NM_000426, intron 10 of 64) L1MEd|LINE|L1 298965 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 139.25-49 chr2 120910363 120910613 + 1 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 118207 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 189.75-19 chr2 55121551 55121766 + 1 NA intron (NM_001321904, intron 1 of 9) intron (NM_001321904, intron 1 of 9) 16173 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 144.75-68 chr5 8619786 8620242 + 1 NA Intergenic Intergenic 159089 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 179.75-35 chr3 127449387 127449655 + 1 NA Intergenic Intergenic -58851 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 160.25-44 chr4 58101454 58101738 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 434732 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 220.25-42 chr9 86279338 86279617 + 1 NA intron (NM_030940, intron 1 of 3) intron (NM_030940, intron 1 of 3) 3061 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 221.5-6 chr10 4750269 4750611 + 1 NA Intergenic L1MEf|LINE|L1 -72370 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 173.5-54 chr20 10773155 10773446 + 1 NA Intergenic MSTB1|LTR|ERVL-MaLR 20210 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 151.25-50 chr6 40615652 40615821 + 1 NA Intergenic L1ME2z|LINE|L1 -28372 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 158.5 chr1 23361741 23362178 + 1 NA 3' UTR (NM_001077195, exon 4 of 4) 3' UTR (NM_001077195, exon 4 of 4) 6427 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 163.5-49 chr22 28373535 28373814 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -86195 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 131.25-76 chr6 77016873 77017022 + 1 NA Intergenic L2a|LINE|L2 -423324 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 153.75-52 chr3 79799223 79799498 + 1 NA Intergenic Intergenic -31362 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 219.5-48 chr7 69084421 69084792 + 1 NA Intergenic L1P4|LINE|L1 513018 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 198.75-9 chr12 50354608 50354861 + 1 NA exon (NM_001145475, exon 4 of 8) exon (NM_001145475, exon 4 of 8) 41875 NM_001145475 121006 Hs.133187 NM_001145475 ENSG00000185958 FAM186A - family with sequence similarity 186 member A protein-coding 124.5-23 chr11 124239141 124239347 + 1 NA Intergenic Intergenic -10432 NR_045681 26494 Hs.448172 NM_001002905 ENSG00000197849 OR8G1 HSTPCR25|OR8G1P|TPCR25 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding 114.25-39 chr17 62968082 62968266 + 1 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 1939 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 148.5-41 chr18 6590555 6590730 + 1 NA TTS (NR_120518) TTS (NR_120518) 79226 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 137.5-97 chr5 167659863 167660142 + 1 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 86343 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 130.75-52 chr3 124345703 124345910 + 1 NA intron (NM_001024660, intron 9 of 59) intron (NM_001024660, intron 9 of 59) -28526 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 234.5-37 chr6 120305162 120305500 + 1 NA Intergenic L1MEd|LINE|L1 290152 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 273.5-2 chr1 93202487 93202865 + 1 NA intron (NM_001306076, intron 7 of 28) intron (NM_001306076, intron 7 of 28) 21960 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 254.5-20 chr4 63953734 63954014 + 1 NA Intergenic L1MEf|LINE|L1 455576 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 260.5-18 chr2 46617031 46617390 + 1 NA promoter-TSS (NM_014171) promoter-TSS (NM_014171) -5 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 137.25-21 chr12 13194753 13194941 + 1 NA Intergenic Intergenic -1879 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 285.5-15 chr6 61559261 61559581 + 1 NA intron (NR_146870, intron 14 of 15) L1M1|LINE|L1 -14709 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 117.5-48 chr2 43035291 43035425 + 1 NA intron (NR_110585, intron 2 of 5) MER44A|DNA|TcMar-Tigger 4185 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 168.5-4 chr1 183016017 183016350 + 1 NA Intergenic AluYk4|SINE|Alu -7237 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 160.5-6 chr10 75086656 75086862 + 1 NA Intergenic MER31A|LTR|ERV1 12727 NM_001363514 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 143.5-65 chr3 40944928 40945138 + 1 NA Intergenic L1MB8|LINE|L1 -254472 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 198.5-47 chr6 145592399 145592620 + 1 NA Intergenic L1PA8|LINE|L1 94368 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 185.25-18 chr14 63551697 63551955 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -8431 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 141.5-4 chr1 111385180 111385389 + 1 NA intron (NR_029429, intron 4 of 4) L2b|LINE|L2 4567 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 184.5 chr1 27626094 27626294 + 1 NA promoter-TSS (NM_001042747) promoter-TSS (NM_001042747) 46 NM_001042747 2268 Hs.1422 NM_005248 ENSG00000000938 FGR SRC2|c-fgr|c-src2|p55-Fgr|p55c-fgr|p58-Fgr|p58c-fgr FGR proto-oncogene, Src family tyrosine kinase protein-coding 146.5-29 chr15 33816189 33816464 + 1 NA intron (NM_001243996, intron 73 of 102) intron (NM_001243996, intron 73 of 102) -152171 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 119.5-87 chr4 10924459 10924641 + 1 NA Intergenic Intergenic -239782 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 153.25-31 chr2 224840663 224840844 + 1 NA intron (NM_001290263, intron 23 of 55) L1MA8|LINE|L1 106296 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 149.25-35 chr2 191720545 191720923 + 1 NA Intergenic Intergenic 30553 NR_131917 105747689 Hs.104972 NR_131917 LOC105747689 - uncharacterized LOC105747689 ncRNA 159.5-52 chr21 22100886 22101079 + 1 NA intron (NR_038400, intron 1 of 5) L1M4|LINE|L1 2365 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 205.5-12 chr14 51784573 51784883 + 1 NA Intergenic Intergenic 67445 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 123.75-43 chr15 100412076 100412301 + 1 NA intron (NR_120374, intron 3 of 4) L1MB3|LINE|L1 39249 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 147.5-42 chr2 29925603 29925978 + 1 NA Intergenic Intergenic -4204 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 130.25-93 chr8 137585895 137586115 + 1 NA Intergenic LTR8A|LTR|ERV1 -172417 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 231.5-35 chr4 129901935 129902287 + 1 NA intron (NR_151713, intron 12 of 16) MER84-int|LTR|ERV1 130492 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 186.75-11 chr13 94627793 94628161 + 1 NA 3' UTR (NM_180989, exon 9 of 9) 3' UTR (NM_180989, exon 9 of 9) 26120 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 142.5-79 chr5 117270702 117270927 + 1 NA Intergenic Intergenic -144698 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 210.25-9 chr10 112248739 112249071 + 1 NA Intergenic Intergenic -34495 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 142.5-30 chr15 83979178 83979342 + 1 NA intron (NM_207517, intron 20 of 29) intron (NM_207517, intron 20 of 29) -100927 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 217.5-34 chr4 92968378 92968716 + 1 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 664148 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 119.5-119 chr8 28372741 28372953 + 1 NA intron (NM_018660, intron 1 of 9) intron (NM_018660, intron 1 of 9) 13613 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 118.5-88 chr5 161098666 161098838 + 1 NA Intergenic Intergenic -160126 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 209.5-24 chr22 28400167 28400434 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -59569 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 198.75-49 chr8 129383282 129383647 + 1 NA intron (NR_130918, intron 1 of 2) L2c|LINE|L2 100678 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 121.5-102 chr6 122177927 122178135 + 1 NA Intergenic (TCATCAT)n|Simple_repeat|Simple_repeat -221520 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 232.5-17 chr15 59731235 59731582 + 1 NA Intergenic Intergenic -42088 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 193.75-12 chr13 37704586 37704831 + 1 NA intron (NM_001135958, intron 2 of 9) intron (NM_001135958, intron 2 of 9) -105864 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 150.75-70 chr8 109625801 109626214 + 1 NA intron (NM_001099746, intron 1 of 5) L1M5|LINE|L1 17183 NM_001099756 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 161.5-28 chr13 40383582 40383777 + 1 NA intron (NR_024506, intron 5 of 5) MIR|SINE|MIR 97327 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 192.5-6 chr10 65295591 65295955 + 1 NA Intergenic Intergenic -275652 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 171.75-50 chr6 75137728 75138027 + 1 NA intron (NM_080645, intron 15 of 50) MLT1A|LTR|ERVL-MaLR -9095 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 139.25-35 chr15 85959707 85959935 + 1 NA Intergenic Intergenic -119799 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 175.5-64 chr6 19999495 19999737 + 1 NA Intergenic Intergenic 162246 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 117.5-34 chr17 21531844 21531977 + 1 NA non-coding (NR_160801, exon 2 of 2) non-coding (NR_160801, exon 2 of 2) 19768 NR_160801 339263 Hs.514016 NM_001113434 ENSG00000212719 LINC02693 C17orf51 long intergenic non-protein coding RNA 2693 ncRNA 115.25-15 chr10 109486948 109487144 + 1 NA Intergenic L1ME3G|LINE|L1 436200 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 172.5-57 chr5 14051108 14051293 + 1 NA Intergenic L1ME1|LINE|L1 -92142 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 170.5-74 chr6 142862514 142862765 + 1 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 82537 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 115.5-100 chr8 118888412 118888684 + 1 NA Intergenic L1M3d|LINE|L1 63337 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 159.5-59 chr3 96028463 96028815 + 1 NA Intergenic Intergenic -331325 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 194.75-15 chr17 2458492 2458721 + 1 NA intron (NM_024086, intron 6 of 9) AluSz|SINE|Alu -43170 NR_028335 284009 Hs.632244 NM_001025459 LOC284009 - uncharacterized LOC284009 ncRNA 115.75-47 chr2 153605525 153605745 + 1 NA Intergenic Intergenic -126873 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 172.75-5 chr10 97263315 97263708 + 1 NA exon (NM_001256423, exon 4 of 12) exon (NM_001256423, exon 4 of 12) 7146 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 209.75-31 chr5 72565475 72565854 + 1 NA intron (NR_105008, intron 1 of 3) intron (NR_105008, intron 1 of 3) 8587 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 122.5-93 chr8 90021402 90021547 + 1 NA intron (NM_001330575, intron 7 of 11) L2b|LINE|L2 19997 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 198.75-25 chr20 54608213 54608484 + 1 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 132755 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 189.5-62 chr7 54719967 54720341 + 1 NA Intergenic MSTB|LTR|ERVL-MaLR 39057 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 253.5-11 chr12 80495893 80496355 + 1 NA intron (NM_001145026, intron 13 of 44) intron (NM_001145026, intron 13 of 44) 51889 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 164.75-40 chr22 35016681 35016882 + 1 NA Intergenic L2a|LINE|L2 -18865 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 137.75 chr1 45059460 45059671 + 1 NA intron (NM_020883, intron 3 of 13) L1MB8|LINE|L1 47311 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 226.5-25 chr2 24752769 24753117 + 1 NA intron (NM_001362950, intron 20 of 23) intron (NM_001362950, intron 20 of 23) -40172 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 192.75-35 chr5 106564759 106565070 + 1 NA Intergenic Intergenic 446100 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 203.5-11 chr13 75232285 75232561 + 1 NA Intergenic Intergenic 7958 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 128.25-64 chr5 83616535 83616775 + 1 NA Intergenic Intergenic -54341 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 207.25-13 chr2 28851189 28851708 + 1 NA TTS (NM_001142634) TTS (NM_001142634) 18861 NM_017910 55006 Hs.468026 NM_017910 ENSG00000171103 TRMT61B - tRNA methyltransferase 61B protein-coding 182.25-24 chr2 154387337 154387689 + 1 NA intron (NM_052917, intron 9 of 12) L1MA7|LINE|L1 69925 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 151.75-50 chr20 9324639 9324846 + 1 NA intron (NM_000933, intron 1 of 35) intron (NM_000933, intron 1 of 35) 16942 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 167.75-60 chr6 39607206 39607594 + 1 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 118008 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 175.25-48 chr6 56461482 56461669 + 1 NA intron (NM_001144770, intron 93 of 94) intron (NM_001144770, intron 93 of 94) -67447 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 252.5-30 chr5 19879635 19879964 + 1 NA intron (NM_001291957, intron 1 of 12) intron (NM_001291957, intron 1 of 12) 6473 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 161.75-67 chr9 26876388 26876584 + 1 NA intron (NM_001167575, intron 4 of 5) (T)n|Simple_repeat|Simple_repeat 16316 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 135.5-105 chr8 112623063 112623288 + 1 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -20318 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 168.75-3 chr1 180176504 180176782 + 1 NA intron (NM_002826, intron 4 of 11) intron (NM_002826, intron 4 of 11) 21774 NM_002826 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 114.25-54 chr2 58870929 58871143 + 1 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -346672 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 135.5-31 chr14 55239826 55240064 + 1 NA Intergenic L1MC4|LINE|L1 -31476 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 125.5-49 chr15 66715793 66716000 + 1 NA intron (NM_005585, intron 2 of 3) intron (NM_005585, intron 2 of 3) 13660 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 173.25-36 chr21 18368168 18368614 + 1 NA intron (NM_002772, intron 6 of 24) MLT1J2|LTR|ERVL-MaLR 35394 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 194.25 chr1 28685556 28685785 + 1 NA intron (NM_001319674, intron 2 of 9) intron (NM_001319674, intron 2 of 9) 16886 NM_006582 10691 Hs.632373 NM_006582 ENSG00000162419 GMEB1 P96PIF|PIF96 glucocorticoid modulatory element binding protein 1 protein-coding 156.5-94 chr9 10841350 10841597 + 1 NA Intergenic L1MEc|LINE|L1 228267 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 255.25-4 chr10 52699004 52699338 + 1 NA intron (NR_155748, intron 1 of 2) MER5A|DNA|hAT-Charlie 56233 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 148.5-59 chr3 60409602 60409946 + 1 NA intron (NM_001320900, intron 6 of 9) LTR106_Mam|LTR|LTR 208096 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 196.5-73 chr8 118598775 118599049 + 1 NA intron (NR_109794, intron 1 of 4) MER5B|DNA|hAT-Charlie -22089 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 124.5-20 chr11 88076313 88076525 + 1 NA Intergenic L1MA6|LINE|L1 99024 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 129.5-94 chr8 141618418 141618561 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -111259 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 217.5-19 chr2 71976457 71976775 + 1 NA Intergenic L1MB5|LINE|L1 171246 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 155.5-21 chr11 90638060 90638303 + 1 NA intron (NR_104190, intron 3 of 6) L1PA5|LINE|L1 -82324 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 195.5-95 chr9 128561073 128561358 + 1 NA intron (NM_003127, intron 1 of 55) AluSc|SINE|Alu 8628 NM_001363759 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 119.75-60 chr4 43483153 43483350 + 1 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 9292 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 174.5-79 chr8 55196821 55197058 + 1 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 94911 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 140.25-68 chr5 84325416 84325689 + 1 NA intron (NM_001278642, intron 1 of 9) L1MB3|LINE|L1 59315 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 152.5-72 chr3 124972315 124972553 + 1 NA intron (NM_020733, intron 16 of 16) intron (NM_020733, intron 16 of 16) -37683 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 145.25-67 chr5 170789172 170789371 + 1 NA intron (NM_001291985, intron 3 of 8) intron (NM_001291985, intron 3 of 8) 5546 NM_014211 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 150.25-42 chr2 155206329 155206555 + 1 NA Intergenic L1MB3|LINE|L1 507747 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 118.25-19 chr12 43267532 43267833 + 1 NA Intergenic Intergenic 112367 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 122.5-57 chr3 60220009 60220230 + 1 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -139210 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 117.25-46 chr2 76682517 76682838 + 1 NA Intergenic Intergenic -303288 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 225.25-31 chr7 31408833 31409126 + 1 NA Intergenic Intergenic -68253 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 140.5-6 chr10 44550440 44550701 + 1 NA Intergenic L1MD1|LINE|L1 -165473 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 185.75-16 chr12 47989982 47990339 + 1 NA intron (NM_033150, intron 15 of 52) AluSx|SINE|Alu 14316 NM_033150 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 229.5-50 chr8 82622790 82623198 + 1 NA Intergenic Intergenic -289110 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 239.5-18 chr4 44380772 44381213 + 1 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 67817 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 137.25-56 chr4 37968133 37968320 + 1 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 7828 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 285.25-10 chr2 109183476 109183780 + 1 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -42040 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 149.75-43 chr3 147947778 147948019 + 1 NA Intergenic Intergenic -130261 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 132.5-99 chr6 54144877 54145079 + 1 NA intron (NM_001281746, intron 4 of 11) intron (NM_001281746, intron 4 of 11) 33535 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 141.75-28 chr16 24231606 24231820 + 1 NA Intergenic MIR|SINE|MIR -4391 NR_146569 105371142 Hs.128031 NR_146569 ENSG00000260264 LINC2194 - long intergenic non-protein coding RNA 2194 ncRNA 175.5-23 chr13 103437585 103437895 + 1 NA Intergenic Intergenic 12540 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 186.75-39 chr4 73595850 73596224 + 1 NA intron (NM_001270392, intron 2 of 9) intron (NM_001270392, intron 2 of 9) 24399 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 129.5-20 chr11 133502729 133503017 + 1 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 29628 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 195.5-63 chr4 73429796 73430101 + 1 NA Intergenic MLT1A1|LTR|ERVL-MaLR -6273 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 144.25-28 chr16 80367374 80367567 + 1 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -173264 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 195.5-79 chr6 155180097 155180314 + 1 NA intron (NM_012454, intron 11 of 25) AluSp|SINE|Alu -36761 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 181.5-36 chr2 46120816 46121176 + 1 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -176411 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 115.75-70 chr4 60106475 60106639 + 1 NA Intergenic Tigger18a|DNA|TcMar-Tigger -816062 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 147.25-13 chr14 27431373 27431596 + 1 NA intron (NR_148991, intron 2 of 2) L1MC4|LINE|L1 -181104 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 162.5-100 chrX 31898811 31899033 + 1 NA intron (NM_000109, intron 47 of 78) intron (NM_000109, intron 47 of 78) 256547 NM_004020 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 272.25-11 chr2 67125634 67126271 + 1 NA intron (NR_038844, intron 7 of 7) intron (NR_038844, intron 7 of 7) 39506 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 192.5-12 chr11 103363633 103363981 + 1 NA intron (NM_001377, intron 83 of 88) Tigger20a|DNA|TcMar-Tigger 254381 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 148.75-62 chr6 126139703 126140012 + 1 NA Intergenic L1MD|LINE|L1 153317 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 149.75-56 chr6 8336744 8336998 + 1 NA Intergenic L2|LINE|L2 98674 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 214.25-4 chr1 98106275 98106792 + 1 NA Intergenic Intergenic -56840 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 160.5-36 chr2 88238491 88238805 + 1 NA Intergenic MIR3|SINE|MIR 65509 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 310.75-8 chr2 230150912 230151470 + 1 NA Intergenic Intergenic 68793 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 132.75-39 chr14 99368800 99368954 + 1 NA Intergenic L1MB8|LINE|L1 -96680 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 173.25-47 chr3 129949101 129949388 + 1 NA Intergenic LTR16A1|LTR|ERVL -25476 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 119.25-48 chr2 57456859 57457022 + 1 NA Intergenic Intergenic -450711 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 176.25-65 chr7 37332232 37332437 + 1 NA intron (NM_001206480, intron 2 of 21) intron (NM_001206480, intron 2 of 21) 21334 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 212.75-5 chr11 85656875 85657183 + 1 NA TTS (NM_032273) TTS (NM_032273) 8100 NR_028027 58487 Hs.535319 NM_021212 ENSG00000137504 CREBZF SMILE|ZF CREB/ATF bZIP transcription factor protein-coding 172.75-21 chr2 86226393 86226660 + 1 NA intron (NM_001371279, intron 7 of 8) AluJo|SINE|Alu 27069 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 136.75-14 chr10 96453499 96453648 + 1 NA intron (NM_012465, intron 2 of 20) L1ME4a|LINE|L1 60353 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 138.75-37 chr2 64769865 64770125 + 1 NA Intergenic Intergenic 93636 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 138.25-33 chr16 76900936 76901140 + 1 NA Intergenic Intergenic 32102 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 163.75-34 chr2 171365602 171365855 + 1 NA intron (NM_001321158, intron 1 of 8) L1MEf|LINE|L1 68262 NM_001321159 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 125.25-41 chr2 106896228 106896376 + 1 NA Intergenic Intergenic -9193 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 122.5-49 chr2 99766652 99766871 + 1 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -276744 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 188.25-54 chr7 5806552 5806787 + 1 NA Intergenic AluSx|SINE|Alu -16491 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 119.75-91 chr9 77300281 77300514 + 1 NA intron (NM_001018038, intron 33 of 68) L1ME4a|LINE|L1 -122480 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 116.75-50 chr3 43706676 43706792 + 1 NA intron (NR_158560, intron 3 of 5) AluJr|SINE|Alu -15140 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 217.25-3 chr10 29268615 29269052 + 1 NA Intergenic Intergenic -20237 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 190.5-4 chr1 165389065 165389399 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR -32517 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 145.25-4 chr1 92798889 92799068 + 1 NA Intergenic AluSc|SINE|Alu -6568 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 228.5-2 chr1 170290011 170290273 + 1 NA Intergenic LTR104_Mam|LTR|Gypsy -5934 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 137.25-61 chr4 112399052 112399278 + 1 NA intron (NM_001102406, intron 4 of 15) L2a|LINE|L2 101796 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 130.5-65 chr3 180321586 180321762 + 1 NA Intergenic MER77|LTR|ERVL -92499 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 117.5-52 chr2 137014007 137014155 + 1 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 248536 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 161.75-63 chr8 113354044 113354306 + 1 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 22977 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 150.25-10 chr10 50898103 50898415 + 1 NA Intergenic L1MC3|LINE|L1 -12584 NM_001198818 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 189.5-47 chr4 147300581 147300891 + 1 NA Intergenic Intergenic 43981 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 129.25-50 chr3 7172031 7172308 + 1 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -278152 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 117.5-61 chr22 47409639 47409820 + 1 NA Intergenic Intergenic 64158 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 267.5-9 chr17 51071302 51071772 + 1 NA intron (NM_001130527, intron 2 of 29) intron (NM_001130527, intron 2 of 29) -24659 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 281.75-22 chrX 31110016 31110585 + 1 NA Intergenic Intergenic -38259 NM_031894 53940 Hs.333125 NM_031894 ENSG00000132446 FTHL17 CT38 ferritin heavy chain like 17 protein-coding 125.25-63 chr5 21085796 21086107 + 1 NA Intergenic Intergenic -373529 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 305.25-18 chr8 61528242 61528723 + 1 NA intron (NM_004318, intron 21 of 24) intron (NM_004318, intron 21 of 24) 161329 NM_032467 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 226.5-12 chr12 39462322 39462684 + 1 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -19383 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 166.25-11 chr12 13190254 13190651 + 1 NA Intergenic Intergenic -6274 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 221.5-27 chr22 26223975 26224266 + 1 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 54646 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 144.5-97 chr6 100426993 100427459 + 1 NA intron (NM_005068, intron 8 of 10) intron (NM_005068, intron 8 of 10) 36449 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 259.5-19 chr21 19366077 19366450 + 1 NA Intergenic Intergenic 533492 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 234.25-32 chr7 154260555 154260868 + 1 NA intron (NM_130797, intron 1 of 25) (TA)n|Simple_repeat|Simple_repeat -44448 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 207.75-44 chr9 75227782 75228063 + 1 NA Intergenic HAL1|LINE|L1 139408 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 136.5-55 chr2 104768532 104768799 + 1 NA Intergenic Intergenic -10946 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 250.25-5 chr17 49698565 49698947 + 1 NA Intergenic Intergenic 9208 NM_005827 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 182.75-28 chr21 44393807 44394104 + 1 NA intron (NM_003307, intron 11 of 31) AluSq2|SINE|Alu -31574 NM_001320352 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 126.75-22 chr14 45579588 45579723 + 1 NA Intergenic L1MA3|LINE|L1 135947 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 172.75-45 chr8 92097902 92098252 + 1 NA intron (NM_175634, intron 1 of 11) intron (NM_175634, intron 1 of 11) 1611 NM_001198628 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 148.5-36 chr17 2026293 2026621 + 1 NA Intergenic L2a|LINE|L2 -1123 NM_178568 146760 Hs.22917 NM_178568 ENSG00000185924 RTN4RL1 NGRH2|NgR3 reticulon 4 receptor like 1 protein-coding 158.5-26 chr12 5421354 5421615 + 1 NA Intergenic L3|LINE|CR1 -10624 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 238.5-7 chr10 20046433 20046687 + 1 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 230128 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 170.5-56 chr5 13336336 13336613 + 1 NA Intergenic L1MC5a|LINE|L1 -303588 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 163.5-54 chr3 40524371 40524592 + 1 NA promoter-TSS (NM_198484) promoter-TSS (NM_198484) -397 NM_001287245 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 150.25-61 chr5 66275241 66275522 + 1 NA Intergenic Intergenic -65935 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 162.5-4 chr1 99602487 99602799 + 1 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -43470 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 162.5-49 chr2 235911199 235911412 + 1 NA intron (NM_014914, intron 11 of 16) L2a|LINE|L2 257081 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 139.5-109 chr8 131841976 131842250 + 1 NA Intergenic LTR88c|LTR|Gypsy? -61980 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 204.75-25 chr2 95101396 95101868 + 1 NA intron (NR_136152, intron 7 of 10) intron (NR_136152, intron 7 of 10) 19925 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 193.5-8 chr10 67451570 67451918 + 1 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -48334 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 173.5-22 chr14 48503615 48503836 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -708711 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 312.25-6 chr2 107746063 107746510 + 1 NA Intergenic L1PA4|LINE|L1 -7826 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 187.25-60 chr7 46421045 46421251 + 1 NA Intergenic Intergenic 275974 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 119.25-70 chr3 146919865 146920102 + 1 NA Intergenic Intergenic -1940 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 341.25-4 chr11 27904777 27905306 + 1 NA Intergenic Intergenic -151774 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 133.5-105 chr6 151155313 151155565 + 1 NA Intergenic AluJb|SINE|Alu 52764 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 179.75-47 chr6 39559590 39559806 + 1 NA intron (NM_001289020, intron 10 of 21) L2c|LINE|L2 -128308 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 158.5-107 chrX 89130745 89130954 + 1 NA Intergenic L1M1|LINE|L1 383624 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 172.5-22 chr17 77939664 77940006 + 1 NA Intergenic L1ME4a|LINE|L1 -55748 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 154.5-36 chr17 62407508 62407702 + 1 NA intron (NM_001144933, intron 10 of 11) intron (NM_001144933, intron 10 of 11) -16280 NM_181725 339175 Hs.381204 NM_181725 ENSG00000087995 METTL2A METTL2 methyltransferase like 2A protein-coding 155.5-99 chr9 35207363 35207519 + 1 NA intron (NM_006377, intron 1 of 38) AluJr|SINE|Alu 45432 NM_001330653 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 223.25-8 chr12 75117883 75118220 + 1 NA intron (NM_001260499, intron 2 of 3) MIRc|SINE|MIR 91697 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 171.5-33 chr17 61107967 61108237 + 1 NA intron (NM_001330413, intron 23 of 25) L1MDa|LINE|L1 259602 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 269.5-2 chr1 96918892 96919234 + 1 NA Intergenic MIRb|SINE|MIR -176860 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 187.5-61 chr5 142971738 142971972 + 1 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -102945 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 180.5-31 chr17 71088324 71088747 + 1 NA Intergenic Intergenic 113644 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 143.75-33 chr14 42523367 42523541 + 1 NA Intergenic Intergenic 916598 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 197.5-3 chr1 48726048 48726362 + 1 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) 50686 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 158.75-48 chr4 38687525 38687801 + 1 NA intron (NM_016531, intron 2 of 5) intron (NM_016531, intron 2 of 5) -23035 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 186.75-27 chr2 118697580 118697963 + 1 NA Intergenic L1ME4a|LINE|L1 -94805 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 176.5-41 chr19 32643096 32643327 + 1 NA intron (NM_032139, intron 8 of 28) intron (NM_032139, intron 8 of 28) 31969 NM_032139 84079 Hs.59236 NM_032139 ENSG00000105186 ANKRD27 PP12899|VARP ankyrin repeat domain 27 protein-coding 127.5-109 chr6 56920395 56920572 + 1 NA intron (NM_001144769, intron 2 of 96) MLT1J|LTR|ERVL-MaLR 34347 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 226.25-13 chr17 59670902 59671402 + 1 NA intron (NM_001288653, intron 14 of 31) intron (NM_001288653, intron 14 of 31) 36446 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 247.25-16 chr20 15365737 15366034 + 1 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 169045 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 160.75-31 chr2 80175048 80175265 + 1 NA intron (NM_001282598, intron 7 of 17) L2b|LINE|L2 129596 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 207.5-26 chr2 11708564 11708923 + 1 NA intron (NM_001349207, intron 1 of 20) MIR3|SINE|MIR -15572 NM_001261427 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 161.25-5 chr1 164589434 164589802 + 1 NA intron (NM_001204963, intron 2 of 8) MER135|DNA|DNA 29896 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 240.5-42 chr6 93351025 93351399 + 1 NA intron (NM_004440, intron 5 of 16) LTR16A|LTR|ERVL 68347 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 158.5-67 chr3 34841884 34842275 + 1 NA Intergenic Intergenic 551944 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 122.25-24 chr12 14215490 14215622 + 1 NA Intergenic Intergenic -150076 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 157.5-7 chr1 187942384 187942681 + 1 NA Intergenic MER45C|DNA|hAT-Tip100 498904 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 152.5-2 chr1 67008739 67008987 + 1 NA intron (NM_015139, intron 11 of 11) AluJb|SINE|Alu 45285 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 197.75-13 chr14 62531765 62532001 + 1 NA Intergenic Intergenic -391910 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 117.25-65 chr4 51864579 51864731 + 1 NA intron (NM_001040402, intron 3 of 10) MLT1A0|LTR|ERVL-MaLR 21076 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 126.5-56 chr2 205327852 205328134 + 1 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -354507 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 176.5-36 chr17 48185551 48185814 + 1 NA intron (NM_001075099, intron 6 of 12) intron (NM_001075099, intron 6 of 12) -29171 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 178.5-11 chr14 24688085 24688410 + 1 NA Intergenic Intergenic -54057 NM_001346011 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 121.25-68 chr6 128809881 128810084 + 1 NA Intergenic L1PB2|LINE|L1 -73156 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 176.5-58 chr21 29449271 29449595 + 1 NA Intergenic HAL1b|LINE|L1 -46614 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 288.5-6 chr14 64896925 64897399 + 1 NA Intergenic Intergenic -17199 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 175.5-77 chr7 127743629 127743884 + 1 NA intron (NM_014390, intron 10 of 23) intron (NM_014390, intron 10 of 23) 91562 NM_014390 27044 Hs.122523 NM_014390 ENSG00000197157 SND1 TDRD11|Tudor-SN|p100 staphylococcal nuclease and tudor domain containing 1 protein-coding 184.25-3 chr1 157407183 157407395 + 1 NA Intergenic MIRb|SINE|MIR 145226 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 146.5-45 chr2 12176462 12176735 + 1 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -22532 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 127.5-37 chr14 65906105 65906377 + 1 NA Intergenic AluY|SINE|Alu 435139 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 138.5-33 chr14 46431318 46431489 + 1 NA intron (NR_102702, intron 3 of 3) MER45B|DNA|hAT-Tip100 -39956 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 124.5-16 chr11 16042848 16043062 + 1 NA intron (NM_033326, intron 12 of 15) intron (NM_033326, intron 12 of 15) -73334 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 195.5-56 chr3 25583592 25583827 + 1 NA intron (NR_110893, intron 5 of 6) intron (NR_110893, intron 5 of 6) 80663 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 191.25-45 chr4 1996133 1996343 + 1 NA intron (NM_005663, intron 1 of 10) L1M5|LINE|L1 -9761 NR_030641 100126332 NR_030641 ENSG00000284587 MIR943 MIRN943|hsa-mir-943 microRNA 943 ncRNA 191.5-41 chr3 109089498 109089900 + 1 NA intron (NM_014429, intron 8 of 27) intron (NM_014429, intron 8 of 27) -11757 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 207.75-42 chr9 27237732 27237939 + 1 NA Intergenic L1MA8|LINE|L1 44958 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 186.25-29 chr2 182777678 182777956 + 1 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 61560 NM_018981 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 221.75-2 chr10 58987993 58988548 + 1 NA Intergenic Intergenic -11248 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 121.25-29 chr17 52102747 52102895 + 1 NA intron (NM_001082533, intron 2 of 9) MamTip3|DNA|hAT-Tip100 55893 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 182.75-48 chr6 39278074 39278314 + 1 NA Intergenic Intergenic 36225 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 144.5-59 chr2 176413509 176413719 + 1 NA Intergenic Intergenic 144172 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 142.5-78 chr5 95293478 95293720 + 1 NA Intergenic Intergenic -9024 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 156.75-41 chr18 37785235 37785585 + 1 NA Intergenic L1MCa|LINE|L1 128275 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 154.5-14 chr10 81542721 81542999 + 1 NA Intergenic MER5A|DNA|hAT-Charlie -332334 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 142.5-35 chr16 84065987 84066266 + 1 NA intron (NM_003791, intron 17 of 22) intron (NM_003791, intron 17 of 22) -23969 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 229.5-30 chr20 10449969 10450317 + 1 NA intron (NM_001009608, intron 1 of 7) intron (NM_001009608, intron 1 of 7) 14838 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 182.75-37 chr4 139497730 139498144 + 1 NA intron (NM_001306199, intron 7 of 7) intron (NM_001306199, intron 7 of 7) 43816 NM_031296 83452 Hs.591679 NM_031296 ENSG00000172007 RAB33B SMC2 RAB33B, member RAS oncogene family protein-coding 134.5-39 chr19 28418302 28418508 + 1 NA Intergenic Intergenic -188283 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 232.5-18 chr17 55024661 55025013 + 1 NA intron (NM_178509, intron 8 of 17) intron (NM_178509, intron 8 of 17) -56052 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 141.5-110 chr8 34493078 34493279 + 1 NA Intergenic L2a|LINE|L2 -290743 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 243.25-15 chr5 117865951 117866249 + 1 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 135739 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 199.5-22 chr17 41578830 41579183 + 1 NA Intergenic Intergenic -6947 NM_000226 3857 Hs.654569 NM_000226 ENSG00000171403 KRT9 CK-9|EPPK|K9 keratin 9 protein-coding 186.5-33 chr2 139857202 139857608 + 1 NA Intergenic AluJr|SINE|Alu 729280 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 204.5-9 chr11 118951443 118951950 + 1 NA Intergenic AluSq2|SINE|Alu -4602 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 132.5-68 chr22 23072392 23072585 + 1 NA intron (NM_002073, intron 1 of 2) intron (NM_002073, intron 1 of 2) 1969 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 129.75 chr1 101914885 101915076 + 1 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 42968 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 191.25-5 chr1 212922130 212922400 + 1 NA Intergenic MLT1J1|LTR|ERVL-MaLR -28276 NM_024749 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 165.75-56 chr5 108566671 108567096 + 1 NA Intergenic MER20B|DNA|hAT-Charlie 161378 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 120.25-61 chr5 122656107 122656248 + 1 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) -71577 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 132.5-36 chr16 19131063 19131246 + 1 NA Intergenic Intergenic 17190 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - ITPRIP like 2 protein-coding 147.25-45 chr4 43240588 43240816 + 1 NA Intergenic MIRc|SINE|MIR 251841 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 165.5-59 chr3 5280683 5280907 + 1 NA Intergenic AluJr|SINE|Alu -30540 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 172.25-17 chr13 87640256 87640486 + 1 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) -21631 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 228.75-24 chr2 174442323 174442725 + 1 NA intron (NM_001267051, intron 12 of 14) intron (NM_001267051, intron 12 of 14) 44505 NM_001267050 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 251.5-5 chr12 2314590 2315067 + 1 NA intron (NM_199460, intron 3 of 49).2 L1ME3A|LINE|L1 45052 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 120.5-8 chr1 220544413 220544624 + 1 NA intron (NM_018650, intron 1 of 17) MSTD|LTR|ERVL-MaLR 16335 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 175.25-7 chr10 73923653 73924107 + 1 NA Intergenic L2c|LINE|L2 -1103 NR_160938 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 171.25-26 chr2 51124969 51125394 + 1 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 92580 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 154.5-77 chr9 30291308 30291589 + 1 NA Intergenic LTR37-int|LTR|ERV1 117006 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 155.25-70 chr8 16313724 16313921 + 1 NA Intergenic L1ME3C|LINE|L1 -121031 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 320.75-9 chr8 99518245 99518750 + 1 NA intron (NM_017890, intron 29 of 61) intron (NM_017890, intron 29 of 61) 18233 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 220.5-46 chr8 76848577 76849121 + 1 NA intron (NM_024721, intron 6 of 10) intron (NM_024721, intron 6 of 10) 118001 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 221.5-48 chr7 93472503 93472899 + 1 NA intron (NM_001164738, intron 4 of 12) MIRb|SINE|MIR 10154 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 126.5-112 chr8 13673193 13673439 + 1 NA Intergenic Intergenic 43626 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 204.5-26 chr2 56865612 56865931 + 1 NA Intergenic Intergenic -680001 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 168.5-5 chr1 212300155 212300405 + 1 NA intron (NM_006243, intron 1 of 12) intron (NM_006243, intron 1 of 12) -1578 NM_001199756 5525 Hs.744012 NM_006243 ENSG00000066027 PPP2R5A B56A|B56alpha|PR61A protein phosphatase 2 regulatory subunit B'alpha protein-coding 139.25-9 chr10 51999081 51999278 + 1 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -299584 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 356.5-8 chr8 126052423 126053094 + 1 NA Intergenic Intergenic -101561 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 152.5-82 chr4 76937980 76938259 + 1 NA Intergenic MLT1L|LTR|ERVL-MaLR -11633 NM_001306147 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 187.5-37 chr2 89837660 89837904 + 1 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -199875 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 158.5-95 chr7 77296227 77296453 + 1 NA Intergenic L1MA5A|LINE|L1 -96521 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 184.5-44 chr2 175188603 175188941 + 1 NA Intergenic L1MA2|LINE|L1 -7062 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 200.75-19 chr2 67059135 67059371 + 1 NA Intergenic Tigger1|DNA|TcMar-Tigger -27193 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 169.5-75 chr7 17229161 17229498 + 1 NA Intergenic Intergenic -69323 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 139.75-52 chr21 31318635 31318812 + 1 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 25631 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 199.75-25 chr3 95199579 95199974 + 1 NA Intergenic Intergenic 261513 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 123.5-18 chr11 18735024 18735224 + 1 NA intron (NM_001278236, intron 9 of 14) intron (NM_001278236, intron 9 of 14) -8936 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 206.5-39 chr4 43271611 43272012 + 1 NA Intergenic MLT1K|LTR|ERVL-MaLR 220732 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 120.5-59 chr21 19046204 19046372 + 1 NA Intergenic Intergenic -286476 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 131.25-16 chr10 79030647 79030902 + 1 NA intron (NR_015429, intron 3 of 7) GA-rich|Low_complexity|Low_complexity 36674 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 219.5-29 chr2 144951742 144952027 + 1 NA intron (NR_033870, intron 3 of 4) MER33|DNA|hAT-Charlie 283917 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 143.25-22 chr13 70465888 70466141 + 1 NA Intergenic Intergenic -357521 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 212.25-13 chr14 57547119 57547366 + 1 NA Intergenic Intergenic -53385 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 127.5-127 chr9 82906154 82906321 + 1 NA Intergenic Intergenic 156905 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 152.75-10 chr11 104015912 104016151 + 1 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -20609 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 178.5-35 chr2 204714607 204714864 + 1 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 169260 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 113.25-77 chr2 190422381 190422606 + 1 NA intron (NM_017694, intron 2 of 7) HAL1|LINE|L1 14138 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 139.75-45 chr2 167674613 167674786 + 1 NA Intergenic Intergenic -143973 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 130.5-87 chr7 41130431 41130628 + 1 NA intron (NR_110832, intron 4 of 5) intron (NR_110832, intron 4 of 5) 28925 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 219.25-36 chr8 103513397 103513713 + 1 NA intron (NM_001348497, intron 1 of 22) MER46C|DNA|TcMar-Tigger -11645 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 175.25-18 chr14 54792777 54793038 + 1 NA 3' UTR (NM_001161577, exon 9 of 9) 3' UTR (NM_001161577, exon 9 of 9) 38074 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 203.5-6 chr10 90935234 90935569 + 1 NA Intergenic Intergenic -11899 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 179.5-36 chr14 74448084 74448372 + 1 NA Intergenic L1ME1|LINE|L1 -22018 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 165.75-22 chr15 41216543 41216803 + 1 NA exon (NM_001286441, exon 5 of 12) exon (NM_001286441, exon 5 of 12) 14084 NM_001286441 161829 Hs.307999 NM_152596 ENSG00000178997 EXD1 EXDL1 exonuclease 3'-5' domain containing 1 protein-coding 140.75-73 chrX 24182469 24182626 + 1 NA intron (NM_001178084, intron 3 of 7) L2a|LINE|L2 32818 NM_003410 7543 Hs.336681 NM_003410 ENSG00000005889 ZFX ZNF926 zinc finger protein X-linked protein-coding 213.75-18 chr12 46338608 46338933 + 1 NA Intergenic L1MA3|LINE|L1 34003 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 214.25-6 chr10 22545768 22546109 + 1 NA intron (NM_005028, intron 7 of 9) AluJr|SINE|Alu -108009 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 127.25-62 chr3 36559441 36559648 + 1 NA Intergenic MIRb|SINE|MIR 179057 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 127.25-83 chr6 45528791 45529062 + 1 NA intron (NM_001015051, intron 7 of 7) intron (NM_001015051, intron 7 of 7) 106651 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 252.25-15 chr2 187213238 187213538 + 1 NA Intergenic L1PA13|LINE|L1 234864 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 148.5-66 chr3 148823554 148823781 + 1 NA Intergenic Intergenic -4144 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 164.5-89 chr7 67951739 67951942 + 1 NA Intergenic Intergenic -68413 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 178.25-59 chr7 81535558 81535874 + 1 NA intron (NR_136264, intron 3 of 4) LTR1F2|LTR|ERV1 26103 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 166.5-107 chr9 105603599 105603849 + 1 NA 5' UTR (NM_001351501, exon 5 of 11) 5' UTR (NM_001351501, exon 5 of 11) 45593 NR_147214 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 195.5-73 chr5 115012329 115012574 + 1 NA Intergenic Intergenic 157457 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 182.5-12 chr11 93934910 93935187 + 1 NA Intergenic Intergenic -84430 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 130.5-90 chr7 98267586 98267762 + 1 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -14012 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 167.75-3 chr1 66388466 66388667 + 1 NA Intergenic MLT1C|LTR|ERVL-MaLR 34031 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 163.25-21 chr12 122095388 122095580 + 1 NA intron (NM_014938, intron 1 of 16).2 intron (NM_014938, intron 1 of 16).2 16728 NM_014938 22877 Hs.437153 NM_014938 ENSG00000175727 MLXIP MIR|MONDOA|bHLHe36 MLX interacting protein protein-coding 189.5-33 chr2 187381791 187382121 + 1 NA intron (NM_001369434, intron 6 of 15) intron (NM_001369434, intron 6 of 15) 66296 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 142.5-2 chr1 86533120 86533329 + 1 NA Intergenic L1MC1|LINE|L1 -13854 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 139.5-107 chr8 109050800 109050996 + 1 NA Intergenic L1ME1|LINE|L1 -35730 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 137.25-28 chr14 58288824 58289100 + 1 NA non-coding (NR_146595, exon 1 of 1) non-coding (NR_146595, exon 1 of 1) 929 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 195.25-42 chr6 150680082 150680510 + 1 NA intron (NM_001029884, intron 2 of 16) L2a|LINE|L2 -3351 NM_001329800 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 188.75-4 chr10 73147866 73148236 + 1 NA intron (NM_007265, intron 8 of 13) intron (NM_007265, intron 8 of 13) 19957 NM_007265 11319 Hs.631822 NM_007265 ENSG00000122882 ECD GCR2|HSGT1|SGT1 ecdysoneless cell cycle regulator protein-coding 228.25-6 chr10 53307884 53308153 + 1 NA Intergenic Intergenic -536318 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 233.75-4 chr1 207154855 207155212 + 1 NA Intergenic LTR16C|LTR|ERVL 50800 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 139.75-64 chr6 148924783 148925107 + 1 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 39739 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 221.75-11 chr2 26309000 26309423 + 1 NA TTS (NM_001145168) TTS (NM_001145168) 9838 NM_001145168 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 165.5-25 chr13 91473711 91473876 + 1 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 75172 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 142.75-24 chr13 102678110 102678349 + 1 NA exon (NM_003291, exon 29 of 29) exon (NM_003291, exon 29 of 29) 16292 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 206.5-4 chr10 44282647 44282960 + 1 NA Intergenic Intergenic -9947 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 118.25-9 chr10 68333036 68333240 + 1 NA promoter-TSS (NM_022129) promoter-TSS (NM_022129) -210 NM_001033083 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 158.5-49 chr18 75503653 75503934 + 1 NA Intergenic Intergenic -76090 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 150.5-2 chr1 49247824 49248057 + 1 NA intron (NR_136623, intron 2 of 12) MIRb|SINE|MIR -9471 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 161.75-31 chr22 16822378 16822539 + 1 NA promoter-TSS (NM_175878) promoter-TSS (NM_175878) -759 NM_175878 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 253.5-20 chr19 2870964 2871319 + 1 NA intron (NR_145838, intron 1 of 3) AluSx3|SINE|Alu 3806 NM_001300843 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 264.75-22 chr7 71324771 71325160 + 1 NA intron (NM_022479, intron 1 of 10) L1M5|LINE|L1 -17195 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 132.75-16 chr10 21527497 21527754 + 1 NA Intergenic Intergenic -1943 NM_207371 387640 Hs.350848 NM_207371 ENSG00000180592 SKIDA1 C10orf140|DLN-1 SKI/DACH domain containing 1 protein-coding 229.75-20 chr4 60948801 60949335 + 1 NA Intergenic Intergenic 26449 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 210.5-29 chr19 31566054 31566265 + 1 NA Intergenic Intergenic -22030 NM_001278575 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 171.5-30 chr16 24076412 24076740 + 1 NA intron (NM_002738, intron 5 of 16) intron (NM_002738, intron 5 of 16) -126540 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 203.5-19 chr2 55204835 55205167 + 1 NA intron (NR_148539, intron 1 of 3) L1P4|LINE|L1 -26902 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 161.5-5 chr1 83958071 83958267 + 1 NA intron (NM_001350214, intron 1 of 21) MIR|SINE|MIR 40963 NM_024686 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 148.5-65 chr3 138579396 138579622 + 1 NA intron (NM_001320598, intron 2 of 17) L1M1|LINE|L1 12447 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 153.25-57 chr8 125208809 125208993 + 1 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 117041 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 185.5-71 chr8 41648131 41648422 + 1 NA promoter-TSS (NM_152568) promoter-TSS (NM_152568) -917 NM_152568 157848 NM_152568 ENSG00000165066 NKX6-3 NKX6.3 NK6 homeobox 3 protein-coding 216.25-38 chr8 58264973 58265418 + 1 NA intron (NR_105005, intron 2 of 7) Tigger1|DNA|TcMar-Tigger 6906 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 116.25-80 chr7 7829894 7830043 + 1 NA intron (NM_001302350, intron 4 of 4) L2|LINE|L2 -111361 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 119.75-75 chr6 158637292 158637530 + 1 NA intron (NM_001291602, intron 2 of 3) Tigger5b|DNA|TcMar-Tigger 7332 NM_006519 6993 Hs.445999 NM_006519 ENSG00000146425 DYNLT1 CW-1|TCTEL1|tctex-1 dynein light chain Tctex-type 1 protein-coding 151.25-16 chr14 54181952 54182255 + 1 NA Intergenic AluJr|SINE|Alu -214765 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 177.25-32 chr22 48023893 48024179 + 1 NA Intergenic L1MEg|LINE|L1 -250328 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 130.5-16 chr10 123236501 123236631 + 1 NA Intergenic L1M2c|LINE|L1 82164 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 184.5-11 chr11 39215024 39215389 + 1 NA Intergenic MIR|SINE|MIR 566348 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 170.25-67 chr8 140311359 140311607 + 1 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 146261 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 220.5-3 chr1 168148906 168149368 + 1 NA Intergenic MIRb|SINE|MIR -11470 NM_001349632 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 130.25-58 chr21 32718819 32718978 + 1 NA intron (NM_203446, intron 2 of 32) intron (NM_203446, intron 2 of 32) 9023 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 170.5-9 chr1 205286332 205286582 + 1 NA Intergenic Intergenic 29260 NM_001331034 9911 Hs.6360 NM_014858 ENSG00000133069 TMCC2 HUCEP11 transmembrane and coiled-coil domain family 2 protein-coding 140.25-18 chr12 103597170 103597474 + 1 NA intron (NM_017564, intron 3 of 68) intron (NM_017564, intron 3 of 68) 10049 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 238.5-3 chr1 52470224 52470728 + 1 NA intron (NM_001009881, intron 14 of 29) L1ME1|LINE|L1 65874 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 134.25-45 chr20 52134581 52134720 + 1 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) -29166 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 242.5-33 chr5 153852559 153852930 + 1 NA Intergenic AluSz|SINE|Alu 46243 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 126.5-46 chr19 48793280 48793465 + 1 NA Intergenic Intergenic 17657 NM_001284325 587 Hs.512670 NM_001190 ENSG00000105552 BCAT2 BCAM|BCATM|BCT2|PP18 branched chain amino acid transaminase 2 protein-coding 157.5-11 chr10 78899564 78899764 + 1 NA Intergenic L1MC5a|LINE|L1 167784 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 118.25-121 chr9 85644245 85644417 + 1 NA intron (NM_015239, intron 12 of 25) intron (NM_015239, intron 12 of 25) 97698 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 113.25-12 chr10 8281517 8281666 + 1 NA Intergenic Intergenic -13286 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 143.5-45 chr19 38022229 38022414 + 1 NA intron (NM_015073, intron 1 of 21) AluJr|SINE|Alu 115113 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 219.5-8 chr11 80245659 80245927 + 1 NA Intergenic L2b|LINE|L2 517010 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 114.25-12 chr10 98651248 98651475 + 1 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) -204398 NM_001322491 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 124.75-32 chr16 21054871 21055050 + 1 NA intron (NM_001347886, intron 27 of 61) L1ME1|LINE|L1 95886 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 154.5-30 chr14 21039712 21040137 + 1 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) -2438 NM_032572 84659 Hs.525206 NM_032572 ENSG00000165799 RNASE7 RAE1 ribonuclease A family member 7 protein-coding 141.5-97 chr6 42225462 42225695 + 1 NA 3' UTR (NM_033502, exon 18 of 18) 3' UTR (NM_033502, exon 18 of 18) -7717 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 149.5-17 chr11 132093907 132094152 + 1 NA intron (NR_147849, intron 2 of 6) MER57B1|LTR|ERV1 183211 NM_001352004 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 121.75-82 chr7 54656958 54657079 + 1 NA Intergenic AluJr4|SINE|Alu 100048 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 177.75-61 chr8 104617879 104618152 + 1 NA Intergenic L2c|LINE|L2 -28991 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 174.75-7 chr10 43964581 43964885 + 1 NA intron (NR_136147, intron 4 of 4) intron (NR_136147, intron 4 of 4) 52331 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 133.5-49 chr2 72392707 72392882 + 1 NA intron (NM_001321729, intron 18 of 22) L1MEg|LINE|L1 -244932 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 120.5-4 chr1 184522677 184522835 + 1 NA intron (NM_030806, intron 3 of 5) AluJo|SINE|Alu 135727 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 205.25-16 chr2 51346968 51347355 + 1 NA intron (NR_135237, intron 3 of 10) L1ME1|LINE|L1 314560 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 168.75-30 chr20 56468844 56469191 + 1 NA intron (NM_001283036, intron 1 of 8) MIRb|SINE|MIR 432 NM_001283037 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 153.25-39 chr3 180848231 180848423 + 1 NA intron (NR_109986, intron 1 of 13) intron (NR_109986, intron 1 of 13) 21851 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 139.25-53 chr20 48973201 48973400 + 1 NA intron (NM_006420, intron 12 of 38) intron (NM_006420, intron 12 of 38) 51589 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 215.75-19 chr5 18151879 18152171 + 1 NA Intergenic MLT1E2|LTR|ERVL-MaLR 344751 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 296.75-2 chr16 8587638 8588178 + 1 NA intron (NM_001290097, intron 2 of 3) AluJb|SINE|Alu 1930 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 207.25-2 chr1 159935800 159936166 + 1 NA intron (NM_020789, intron 6 of 20) intron (NM_020789, intron 6 of 20) 9630 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 166.5-13 chr10 4696564 4696850 + 1 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -18637 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 183.5-57 chr4 102623714 102624054 + 1 NA Intergenic Intergenic -121398 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 280.25-4 chr15 99719100 99719664 + 1 NA Intergenic L1MC4a|LINE|L1 14055 NM_001284418 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 217.5-39 chr6 141684294 141684749 + 1 NA Intergenic Intergenic 404278 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 209.5-26 chr3 25785225 25785446 + 1 NA intron (NM_001145294, intron 1 of 11) intron (NM_001145294, intron 1 of 11) -1837 NM_001145295 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 188.5-21 chr17 78118004 78118321 + 1 NA intron (NM_001321185, intron 15 of 19) MIRb|SINE|MIR -6363 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 205.25-2 chr1 100674162 100674409 + 1 NA Intergenic L1MB3|LINE|L1 -27281 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 182.5-60 chr5 150315720 150315933 + 1 NA Intergenic MER3|DNA|hAT-Charlie -12921 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 276.5-3 chr13 83710392 83710951 + 1 NA Intergenic Intergenic 171722 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 260.25-19 chr4 113173973 113174294 + 1 NA intron (NM_001354241, intron 2 of 45) intron (NM_001354241, intron 2 of 45) 21851 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 194.25-23 chr2 32802848 32803183 + 1 NA intron (NM_017735, intron 16 of 19) L1MEh|LINE|L1 -22418 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 139.75-24 chr13 37924572 37924774 + 1 NA Intergenic Intergenic -54248 NM_001135957 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 133.25-74 chr7 35326369 35326709 + 1 NA intron (NR_038864, intron 1 of 2) L1M6|LINE|L1 12684 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 239.75-22 chr21 28387346 28387726 + 1 NA Intergenic Intergenic -151782 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 125.75-47 chr3 26348429 26348617 + 1 NA Intergenic Intergenic -274283 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 151.5-44 chr20 3481923 3482198 + 1 NA intron (NM_001323332, intron 1 of 25) Charlie21a|DNA|hAT-Charlie 11042 NM_001207047 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 265.75-9 chr2 149305407 149305726 + 1 NA Intergenic Intergenic -24419 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 180.5-81 chr7 20811151 20811468 + 1 NA Intergenic Intergenic -15989 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 174.5-78 chr8 53969132 53969466 + 1 NA intron (NM_201437, intron 8 of 8) AluSx|SINE|Alu 53149 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 136.5-4 chr1 52325749 52325988 + 1 NA intron (NM_007324, intron 12 of 17) intron (NM_007324, intron 12 of 17) 40337 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 230.75-16 chr3 182817002 182817407 + 1 NA intron (NM_014616, intron 1 of 29) intron (NM_014616, intron 1 of 29) 23700 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 150.75-25 chr18 9352695 9352954 + 1 NA intron (NM_020648, intron 2 of 4) intron (NM_020648, intron 2 of 4) 18051 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 362.25-10 chr9 83358479 83359132 + 1 NA intron (NM_001244960, intron 3 of 13) intron (NM_001244960, intron 3 of 13) -26844 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 132.5-51 chr2 60946950 60947107 + 1 NA intron (NM_144709, intron 16 of 17) intron (NM_144709, intron 16 of 17) 65454 NM_002908 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 150.75-38 chr2 199209540 199209860 + 1 NA Intergenic Intergenic 248239 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 136.5-38 chr15 59653042 59653186 + 1 NA intron (NM_004492, intron 1 of 4) intron (NM_004492, intron 1 of 4) 4191 NM_001320929 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 137.5-110 chr8 14152003 14152176 + 1 NA intron (NM_001322880, intron 4 of 6) L1MD1|LINE|L1 522399 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 144.75-21 chr11 112291646 112291957 + 1 NA intron (NR_126004, intron 1 of 3) L1M6|LINE|L1 21052 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 139.25-83 chr8 109973327 109973669 + 1 NA intron (NM_014379, intron 2 of 3) intron (NM_014379, intron 2 of 3) 2273 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 194.5-51 chr3 155249349 155249575 + 1 NA Intergenic AluSp|SINE|Alu 8517 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 175.25-5 chr1 244759482 244759734 + 1 NA Intergenic Intergenic -75698 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 181.25-21 chr17 58072549 58072971 + 1 NA Intergenic AluJb|SINE|Alu 10444 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 180.75-48 chr4 123089951 123090177 + 1 NA intron (NM_001345856, intron 13 of 15) intron (NM_001345856, intron 13 of 15) 166986 NM_001317799 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 189.25-40 chr6 111784725 111785072 + 1 NA intron (NM_153047, intron 2 of 13) intron (NM_153047, intron 2 of 13) -24981 NM_001370529 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 152.25-38 chr3 27758764 27759123 + 1 NA Intergenic L2c|LINE|L2 -36228 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 136.25-39 chr17 55411650 55411909 + 1 NA intron (NM_012329, intron 2 of 6) intron (NM_012329, intron 2 of 6) 10056 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 132.5-98 chr6 46268963 46269143 + 1 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -7271 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 158.25-32 chr3 79412281 79412480 + 1 NA intron (NR_110133, intron 1 of 2) intron (NR_110133, intron 1 of 2) 653 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 114.75-36 chr14 85628639 85628857 + 1 NA TTS (NM_001346145) TTS (NM_001346145) 95399 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 145.75-20 chr16 76751927 76752168 + 1 NA Intergenic Intergenic -116889 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 210.25-7 chr10 36518813 36519138 + 1 NA Intergenic MLT2B3|LTR|ERVL -606882 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 133.25-67 chr5 133308640 133308829 + 1 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 118972 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 207.5-28 chr2 62158505 62158762 + 1 NA Intergenic Intergenic -37482 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 149.75-4 chr1 208234973 208235154 + 1 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 9321 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 215.5-36 chr4 172715739 172716047 + 1 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) 10985 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 113.75-9 chr1 96112743 96112888 + 1 NA Intergenic Intergenic 120747 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 194.5-87 chrX 88778775 88779044 + 1 NA Intergenic L1PB1|LINE|L1 31684 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 171.75-28 chr2 67942205 67942408 + 1 NA Intergenic Intergenic -116744 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 141.5-63 chr2 168222732 168222884 + 1 NA intron (NM_013233, intron 1 of 17) Tigger19b|DNA|TcMar-Tigger 24787 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 263.5-7 chr12 50655545 50656047 + 1 NA intron (NM_173602, intron 3 of 37) AluJb|SINE|Alu -108305 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 210.5-6 chr10 74285732 74285946 + 1 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 109076 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 181.5-65 chr7 16620624 16620941 + 1 NA intron (NM_020319, intron 4 of 9) L1MEj|LINE|L1 24972 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 311.5-4 chr17 51691501 51692072 + 1 NA intron (NM_001082533, intron 5 of 9) L1MA8|LINE|L1 256359 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 200.5-61 chr8 38141140 38141421 + 1 NA Intergenic Intergenic 9672 NM_000349 6770 Hs.521535 NM_000349 ENSG00000147465 STAR STARD1 steroidogenic acute regulatory protein protein-coding 124.75-85 chr8 71819094 71819418 + 1 NA Intergenic Intergenic -23867 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 133.75-27 chr14 100987291 100987465 + 1 NA promoter-TSS (NR_003220) promoter-TSS (NR_003220) 332 NR_003219 767606 NR_003219 ENSG00000200413 SNORD114-26 14q(II-26) small nucleolar RNA, C/D box 114-26 snoRNA 307.5-4 chr12 105757949 105758467 + 1 NA Intergenic Intergenic 51434 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 183.5-73 chr7 14684579 14684888 + 1 NA intron (NM_001350717, intron 10 of 24) intron (NM_001350717, intron 10 of 24) 156717 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 216.5-8 chr12 13522900 13523327 + 1 NA Intergenic Intergenic -146368 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 125.5-90 chr4 42415426 42415712 + 1 NA intron (NM_001105529, intron 34 of 35) intron (NM_001105529, intron 34 of 35) 18081 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 162.5-23 chr13 81961391 81961711 + 1 NA Intergenic L1PA17|LINE|L1 -734568 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 135.75-89 chr6 151015523 151015861 + 1 NA exon (NM_001242767, exon 24 of 28) exon (NM_001242767, exon 24 of 28) 8684 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 285.5 chr1 167393568 167393944 + 1 NA intron (NM_001198783, intron 9 of 15) intron (NM_001198783, intron 9 of 15) 64686 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 119.75-72 chr6 55386540 55386824 + 1 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 59213 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 133.75-30 chr15 66722509 66722676 + 1 NA intron (NR_027654, intron 4 of 4) intron (NR_027654, intron 4 of 4) 20356 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 166.25-59 chr8 144002179 144002415 + 1 NA Intergenic FLAM_A|SINE|Alu -9983 NM_198572 375686 Hs.97726 NM_198572 ENSG00000186583 SPATC1 SPATA15 spermatogenesis and centriole associated 1 protein-coding 219.25-32 chr7 33726274 33726646 + 1 NA Intergenic AluSz6|SINE|Alu -178455 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 264.25-2 chr11 118255327 118255898 + 1 NA intron (NM_005797, intron 5 of 5) L1MC5a|LINE|L1 -3244 NR_104404 196264 Hs.15396 NM_198275 ENSG00000160588 MPZL3 - myelin protein zero like 3 protein-coding 169.5-78 chr8 8769748 8770098 + 1 NA Intergenic L1MB7|LINE|L1 67986 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 192.5-57 chr8 88813847 88814173 + 1 NA Intergenic L1PA17|LINE|L1 -486527 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 198.75-3 chr10 44804633 44804854 + 1 NA Intergenic Intergenic -106573 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 197.25-46 chr4 10070827 10071149 + 1 NA Intergenic Charlie15b|DNA|hAT-Charlie 7704 NR_036090 100423011 NR_036090 ENSG00000264931 MIR3138 mir-3138 microRNA 3138 ncRNA 186.75-17 chr15 34729826 34730081 + 1 NA Intergenic Intergenic 25045 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 309.5-7 chr18 3510557 3511079 + 1 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 44568 NR_110428 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 128.5-27 chr15 65126632 65126818 + 1 NA intron (NM_005707, intron 2 of 4) AluJr|SINE|Alu 7083 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 136.75-68 chr4 8903682 8903867 + 1 NA Intergenic L1MC4|LINE|L1 -31935 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 218.75-27 chr4 61150382 61150764 + 1 NA intron (NR_147148, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 6917 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 143.75-71 chr5 89130131 89130441 + 1 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -226181 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 198.5-20 chr19 36634503 36634938 + 1 NA TTS (NM_032825) TTS (NM_032825) 29407 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 195.75-18 chr17 30112550 30112747 + 1 NA Intergenic Intergenic -4159 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 203.5-26 chr2 232867576 232867798 + 1 NA Intergenic MER45C|DNA|hAT-Tip100 -1327 NM_001346122 389084 Hs.657509 NM_206895 ENSG00000182600 SNORC ASCL830|C2orf82|UNQ830 secondary ossification center associated regulator of chondrocyte maturation protein-coding 169.5-85 chr8 131307133 131307433 + 1 NA Intergenic L1MCa|LINE|L1 -266374 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 243.5-23 chr5 92121669 92122043 + 1 NA Intergenic Intergenic -738539 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 159.25-38 chr2 162860740 162861082 + 1 NA Intergenic Intergenic -22144 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 219.75-12 chr16 66841440 66841750 + 1 NA Intergenic Intergenic -2819 NM_005182 766 Hs.37014 NM_005182 ENSG00000168748 CA7 CA-VII|CAVII carbonic anhydrase 7 protein-coding 164.25-40 chr21 19526527 19526818 + 1 NA Intergenic Intergenic 373083 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 149.75-12 chr12 68984044 68984318 + 1 NA Intergenic MER57-int|LTR|ERV1 -20941 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 120.75-34 chr15 71168276 71168461 + 1 NA intron (NR_120349, intron 1 of 1) intron (NR_120349, intron 1 of 1) 20691 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 340.5-6 chr20 33833899 33834490 + 1 NA intron (NM_176812, intron 1 of 4) L1MEc|LINE|L1 22846 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 155.5-73 chr3 119570027 119570267 + 1 NA Intergenic Plat_L3|LINE|CR1 -9345 NM_001125 141 Hs.99884 NM_001125 ENSG00000144843 ADPRH ARH1|hARH1 ADP-ribosylarginine hydrolase protein-coding 169.75-16 chr12 41249876 41250343 + 1 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 61789 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 217.5-10 chr12 132406106 132406447 + 1 NA Intergenic Intergenic 76426 NR_120467 101928416 NR_120467 ENSG00000255916 LOC101928416 - uncharacterized LOC101928416 ncRNA 231.5 chr1 91609856 91610172 + 1 NA Intergenic Intergenic 108906 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 117.75-77 chr7 50035812 50035950 + 1 NA intron (NM_001159878, intron 4 of 7) L1MEi|LINE|L1 57365 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 148.5-54 chr20 19161547 19161722 + 1 NA Intergenic L1MEd|LINE|L1 -51008 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 118.75-20 chr12 22245490 22245638 + 1 NA intron (NM_003034, intron 4 of 4) intron (NM_003034, intron 4 of 4) 89150 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 147.75-89 chr9 129887479 129887651 + 1 NA 3' UTR (NM_015033, exon 17 of 17) 3' UTR (NM_015033, exon 17 of 17) 17960 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 158.75-33 chr2 146347197 146347435 + 1 NA Intergenic Intergenic -239741 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 137.5-73 chr21 14749107 14749326 + 1 NA Intergenic L1MA4|LINE|L1 -106109 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 137.5-80 chr3 197186955 197187158 + 1 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) -2925 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 226.5-26 chr2 32218461 32218731 + 1 NA intron (NM_001330476, intron 10 of 10) AluSx|SINE|Alu 46290 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 293.25-17 chr7 83129475 83130159 + 1 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 33067 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 213.5-20 chr17 73963158 73963555 + 1 NA Intergenic L1ME2z|LINE|L1 -134819 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 170.25-56 chr6 81141720 81142050 + 1 NA Intergenic L1PA14|LINE|L1 610796 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 325.75-6 chr2 75689241 75689794 + 1 NA intron (NM_001201334, intron 9 of 16) MIRb|SINE|MIR 21398 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 238.75-6 chr17 54282313 54282822 + 1 NA Intergenic L2b|LINE|L2 459640 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 232.5-30 chr4 67687679 67687982 + 1 NA intron (NM_018227, intron 2 of 32) L1PA13|LINE|L1 13325 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 210.5-23 chr16 62133705 62134007 + 1 NA Intergenic MSTB-int|LTR|ERVL-MaLR -97418 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 148.75-28 chr19 2774240 2774451 + 1 NA intron (NM_003021, intron 1 of 11) CpG 8928 NM_003021 6449 Hs.203910 NM_003021 ENSG00000104969 SGTA SGT|alphaSGT|hSGT small glutamine rich tetratricopeptide repeat containing alpha protein-coding 148.5-119 chrX 82461439 82461622 + 1 NA Intergenic Intergenic -1046760 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 122.25-3 chr1 110517244 110517486 + 1 NA exon (NM_005549, exon 1 of 1) exon (NM_005549, exon 1 of 1) 1810 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 215.5-3 chr1 216032940 216033188 + 1 NA intron (NM_206933, intron 32 of 71) MLT1J1|LTR|ERVL-MaLR -39401 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 144.25-11 chr10 91148879 91149039 + 1 NA Intergenic L1MC4a|LINE|L1 4121 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 200.5-6 chr1 233733180 233733499 + 1 NA Intergenic MER4E1|LTR|ERV1 109187 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 221.25-24 chr4 47908749 47909151 + 1 NA intron (NR_103795, intron 3 of 23) AluY|SINE|Alu -5277 NR_125879 101927157 Hs.134190 NR_125879 LOC101927157 - uncharacterized LOC101927157 ncRNA 241.25-6 chr14 79161114 79161490 + 1 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -38680 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 230.5-53 chr8 35020968 35021316 + 1 NA Intergenic Intergenic -214333 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 152.75-67 chr8 142072601 142072860 + 1 NA Intergenic AluJb|SINE|Alu -103609 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 133.5-3 chr1 60152173 60152418 + 1 NA Intergenic MIR|SINE|MIR -78525 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 127.5-95 chr5 25278744 25278945 + 1 NA intron (NR_136209, intron 1 of 3) MLT1H2|LTR|ERVL-MaLR 87891 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 210.25-11 chr11 102707858 102708238 + 1 NA Intergenic HAL1|LINE|L1 -2279 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 140.5-80 chr5 4001505 4001771 + 1 NA Intergenic Intergenic 405806 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 173.25-63 chr7 41397641 41397994 + 1 NA Intergenic L1MC1|LINE|L1 -296102 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 115.5-41 chr19 10681649 10681878 + 1 NA intron (NM_012218, intron 11 of 19) intron (NM_012218, intron 11 of 19) -19676 NM_031209 81890 Hs.631638 NM_031209 ENSG00000213339 QTRT1 FP3235|TGT|TGUT queuine tRNA-ribosyltransferase catalytic subunit 1 protein-coding 243.25-16 chr6 120908684 120909048 + 1 NA Intergenic L1ME1|LINE|L1 425614 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 199.5-60 chr8 125919079 125919439 + 1 NA Intergenic Intergenic 31938 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 240.5-22 chr17 49346671 49347002 + 1 NA intron (NR_135579, intron 1 of 7) intron (NR_135579, intron 1 of 7) -14329 NR_110884 102724596 Hs.559253 NR_110882 ENSG00000248714 LOC102724596 - uncharacterized LOC102724596 ncRNA 226.5-15 chr14 35129475 35129833 + 1 NA intron (NM_014672, intron 4 of 7) AluSx3|SINE|Alu 7102 NM_001256680 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 210.25-28 chr20 52843950 52844323 + 1 NA Intergenic Intergenic -128222 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 182.5-18 chr14 75703783 75704056 + 1 NA intron (NM_015072, intron 7 of 31) intron (NM_015072, intron 7 of 31) 42673 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 256.5-11 chr12 48775645 48776160 + 1 NA intron (NM_015270, intron 9 of 21) intron (NM_015270, intron 9 of 21) -3865 NR_039850 100616262 NR_039850 ENSG00000264201 MIR4701 - microRNA 4701 ncRNA 198.75-39 chr5 120866563 120866947 + 1 NA Intergenic Intergenic 335291 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 174.25-64 chrUn_KI270442v1 88085 88275 + 1 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 153.5-50 chr2 193761348 193761581 + 1 NA Intergenic Intergenic -582805 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 237.5-32 chr4 40550846 40551168 + 1 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) -35022 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 213.5-53 chr9 27013294 27013667 + 1 NA intron (NM_001099224, intron 10 of 13) L1ME4b|LINE|L1 -7808 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 219.5-2 chr1 41891620 41891869 + 1 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 27178 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 260.5-9 chr14 55799229 55799676 + 1 NA Intergenic Intergenic -2778 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 146.5-72 chr5 79403682 79403936 + 1 NA intron (NM_004272, intron 5 of 8) L1MC4a|LINE|L1 110027 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 114.5-109 chr9 11648443 11648647 + 1 NA Intergenic AluSc|SINE|Alu 1035339 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 176.5-67 chr4 65535088 65535285 + 1 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 134302 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 197.25-58 chr7 110762721 110763076 + 1 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -328108 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 183.75-13 chr13 109516455 109516685 + 1 NA Intergenic Intergenic 115874 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 477.25-2 chr14 74435259 74436296 + 1 NA Intergenic Intergenic -9567 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 227.5-14 chr12 55054607 55054858 + 1 NA Intergenic Intergenic 34758 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 137.75-86 chr8 84248645 84248985 + 1 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 64149 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 177.5-17 chr14 51649318 51649624 + 1 NA TTS (NR_037676) TTS (NR_037676) 2273 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 149.5-4 chr1 20855611 20855785 + 1 NA intron (NM_003760, intron 20 of 31) intron (NM_003760, intron 20 of 31) -69010 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 136.75-42 chr19 51580339 51580532 + 1 NA intron (NM_007147, intron 2 of 4) L1MC5a|LINE|L1 9152 NR_136208 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 176.25-36 chr20 21690720 21691209 + 1 NA intron (NR_109878, intron 1 of 4) intron (NR_109878, intron 1 of 4) 12621 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 197.75-31 chr3 190227304 190227568 + 1 NA Intergenic MIRb|SINE|MIR 95010 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 153.75-22 chr13 35473982 35474174 + 1 NA 3' UTR (NM_005584, exon 1 of 1) 3' UTR (NM_005584, exon 1 of 1) 2611 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 172.75-41 chr7 107115305 107115789 + 1 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) -53414 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 176.5-28 chr14 57050867 57051174 + 1 NA Intergenic FLAM_A|SINE|Alu 217885 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 177.5-14 chr13 25498343 25498591 + 1 NA intron (NM_016529, intron 2 of 36) intron (NM_016529, intron 2 of 36) 29693 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 163.5-12 chr10 28904936 28905285 + 1 NA Intergenic Intergenic 58702 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 204.5-28 chr2 72184333 72184628 + 1 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -36618 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 152.75-21 chr16 75979615 75979847 + 1 NA Intergenic Intergenic -253241 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 149.25-62 chr8 25287789 25287974 + 1 NA intron (NM_024940, intron 5 of 51) intron (NM_024940, intron 5 of 51) -57521 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 199.5-56 chr7 119387419 119387751 + 1 NA Intergenic L2|LINE|L2 519790 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 148.5-55 chr20 20383267 20383496 + 1 NA Intergenic MLT1F|LTR|ERVL-MaLR 15277 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 217.75-39 chr7 137052082 137052362 + 1 NA intron (NR_046103, intron 1 of 3) L1MD|LINE|L1 112119 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 119.5-36 chr14 86304931 86305119 + 1 NA Intergenic Intergenic 370347 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 133.5-38 chr15 81625319 81625531 + 1 NA Intergenic Intergenic -251212 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 148.25-61 chr6 39097044 39097333 + 1 NA Intergenic L1MC4|LINE|L1 17998 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 152.5 chr1 6719316 6719601 + 1 NA Intergenic AluJb|SINE|Alu -5287 NR_104620 100505887 Hs.250839 NR_104620 LINC01672 NMR long intergenic non-protein coding RNA 1672 ncRNA 133.75-66 chr5 169937823 169938063 + 1 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 42552 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 182.5-71 chr8 127006991 127007273 + 1 NA Intergenic Intergenic -6022 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 183.25-3 chr1 192769224 192769643 + 1 NA Intergenic AluJr|SINE|Alu -39606 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 114.5-105 chr8 87931641 87931921 + 1 NA Intergenic Intergenic -57766 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 184.25-30 chr3 43386291 43386533 + 1 NA intron (NM_001204831, intron 11 of 12) A-rich|Low_complexity|Low_complexity -34450 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 159.25-69 chr9 76785186 76785390 + 1 NA non-coding (NR_015342, exon 3 of 3) non-coding (NR_015342, exon 3 of 3) 20852 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 199.25-5 chr1 244832947 244833226 + 1 NA Intergenic AluJb|SINE|Alu -2220 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 141.75-22 chr14 62783523 62783748 + 1 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 261823 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 178.5-88 chr8 116729467 116729799 + 1 NA intron (NM_003756, intron 1 of 7) L3|LINE|CR1 26190 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 146.75-14 chr14 45263260 45263668 + 1 NA Intergenic L1MA5A|LINE|L1 -10262 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 133.25-30 chr16 54642324 54642457 + 1 NA Intergenic Intergenic 205843 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 218.75-21 chr3 19208264 19208611 + 1 NA intron (NM_144633, intron 1 of 15) intron (NM_144633, intron 1 of 15) 59927 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 160.75-48 chr4 158204683 158204862 + 1 NA Intergenic L1MCb|LINE|L1 -5714 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 140.5-26 chr14 59971025 59971224 + 1 NA intron (NR_075071, intron 12 of 32) L1PA13|LINE|L1 51411 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 163.5-56 chr3 123820784 123821070 + 1 NA intron (NM_001321309, intron 3 of 32) AluSz|SINE|Alu 63405 NM_053027 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 154.5-25 chr12 111616409 111616569 + 1 NA Intergenic Intergenic -16813 NR_132311 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 211.5-16 chr14 66366945 66367312 + 1 NA Intergenic Intergenic -119243 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 213.5-41 chr5 45951513 45951814 + 1 NA Intergenic ALR/Alpha|Satellite|centr -255283 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 140.5-19 chr12 108529163 108529321 + 1 NA intron (NM_014706, intron 15 of 18) L1MC4|LINE|L1 13965 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 164.5-65 chr4 60138402 60138651 + 1 NA Intergenic L1MEc|LINE|L1 -784093 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 258.25-21 chr6 44227622 44228148 + 1 NA intron (NM_001078177, intron 3 of 13) intron (NM_001078177, intron 3 of 13) 4290 NM_001078175 2030 Hs.25450 NM_004955 ENSG00000112759 SLC29A1 ENT1 solute carrier family 29 member 1 (Augustine blood group) protein-coding 168.5-29 chr14 100668971 100669172 + 1 NA intron (NR_024096, intron 1 of 1) intron (NR_024096, intron 1 of 1) 11803 NR_024096 283601 Hs.379802 NM_001007560 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 135.25-22 chr12 56319228 56319554 + 1 NA exon (NM_001127460, exon 23 of 26) exon (NM_001127460, exon 23 of 26) -3043 NM_001190991 10330 Hs.8752 NM_014255 ENSG00000257727 CNPY2 HP10390|MSAP|TMEM4|ZSIG9 canopy FGF signaling regulator 2 protein-coding 271.5-24 chr8 136980567 136981185 + 1 NA Intergenic MIRc|SINE|MIR 432712 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 173.5-106 chr9 28761126 28761422 + 1 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -41969 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 208.5-43 chr20 5456289 5456629 + 1 NA Intergenic AluSx|SINE|Alu -10711 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 135.75-96 chr7 105547267 105547508 + 1 NA intron (NM_001346601, intron 6 of 14) intron (NM_001346601, intron 6 of 14) 15186 NM_021930 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 132.75-96 chr8 28254876 28255199 + 1 NA Intergenic Intergenic -62231 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 172.25-33 chr2 116600167 116600507 + 1 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1214354 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 131.25-19 chr10 105803810 105804100 + 1 NA intron (NR_120625, intron 3 of 3) HAL1|LINE|L1 16378 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 214.5-36 chr3 118574419 118574849 + 1 NA intron (NR_135547, intron 2 of 3) L1ME2|LINE|L1 -67134 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 221.5-33 chr4 46266175 46266512 + 1 NA intron (NM_001114175, intron 7 of 8) (TTAATA)n|Simple_repeat|Simple_repeat 123036 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 162.25-4 chr10 109330518 109330844 + 1 NA Intergenic Intergenic 592565 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 166.5-56 chr2 70792822 70793111 + 1 NA Intergenic L1MC4|LINE|L1 -2323 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 150.75-65 chr7 16591601 16591894 + 1 NA Intergenic Ricksha_c|DNA|MULE-MuDR 54007 NM_020319 57037 Hs.157378 NM_020319 ENSG00000106524 ANKMY2 ZMYND20 ankyrin repeat and MYND domain containing 2 protein-coding 134.25-51 chr22 28365814 28365963 + 1 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -93981 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 114.5-82 chr5 36032667 36032854 + 1 NA Intergenic MER70-int|LTR|ERVL -31738 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 170.5-78 chr7 94580151 94580372 + 1 NA Intergenic L2c|LINE|L2 70452 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 146.75-22 chr2 30642077 30642360 + 1 NA 3' UTR (NM_001002257, exon 6 of 6) 3' UTR (NM_001002257, exon 6 of 6) 165228 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 146.25-24 chr14 71034866 71035243 + 1 NA intron (NM_014982, intron 18 of 35) intron (NM_014982, intron 18 of 35) 127595 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 187.5-57 chr5 56023424 56023773 + 1 NA Intergenic Intergenic 28431 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 228.75-3 chr10 41883876 41884353 + 1 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 483931 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 115.25-55 chr2 232019693 232019856 + 1 NA intron (NR_046477, intron 3 of 18) L2a|LINE|L2 58061 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 210.5-61 chr9 27091760 27092037 + 1 NA Intergenic HAL1|LINE|L1 -17243 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 124.75-62 chr3 140386639 140386807 + 1 NA intron (NM_022131, intron 2 of 16) LTR18B|LTR|ERVL 122066 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 180.5-29 chr15 97188940 97189159 + 1 NA Intergenic Intergenic 332762 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 152.5-67 chr3 36958962 36959217 + 1 NA Intergenic Intergenic -14035 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 128.75-30 chr17 9158950 9159115 + 1 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 20086 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 160.5-47 chr3 4547383 4547608 + 1 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 54147 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 115.25-80 chr5 133187496 133187829 + 1 NA Intergenic L1ME3B|LINE|L1 135649 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 125.5-11 chr10 25020282 25020492 + 1 NA intron (NM_024838, intron 1 of 2) intron (NM_024838, intron 1 of 2) 3775 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 158.25-16 chr14 47550022 47550255 + 1 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 124816 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 133.5-125 chr9 95870186 95870436 + 1 NA TTS (NR_023389) TTS (NR_023389) -5380 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 159.5-31 chr17 40849255 40849706 + 1 NA Intergenic Intergenic 17743 NM_000223 3859 Hs.66739 NM_000223 ENSG00000187242 KRT12 K12 keratin 12 protein-coding 170.5-75 chr7 21702029 21702239 + 1 NA intron (NM_001277115, intron 36 of 81) intron (NM_001277115, intron 36 of 81) 159095 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 234.5-28 chr21 27519451 27519728 + 1 NA Intergenic Intergenic -202790 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 117.5-66 chr3 186340235 186340492 + 1 NA intron (NM_001346, intron 1 of 24) intron (NM_001346, intron 1 of 24) 21871 NM_001080744 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 185.5-53 chr4 53418678 53418894 + 1 NA intron (NM_001134937, intron 10 of 17) intron (NM_001134937, intron 10 of 17) 41133 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 232.75-22 chr6 155024165 155024613 + 1 NA Intergenic Intergenic -65900 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 135.5-13 chr10 98690717 98690982 + 1 NA intron (NM_021828, intron 6 of 11) intron (NM_021828, intron 6 of 11) 233719 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 114.5-88 chr6 9231105 9231256 + 1 NA Intergenic Intergenic 578971 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 135.25-18 chr11 35235370 35235655 + 1 NA Intergenic Intergenic 72562 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 125.5-3 chr1 70850860 70851082 + 1 NA Intergenic Intergenic 144518 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 127.5-44 chr17 12728200 12728327 + 1 NA intron (NM_001146312, intron 5 of 13) intron (NM_001146312, intron 5 of 13) -22128 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 204.5-44 chr4 87588580 87588815 + 1 NA Intergenic Intergenic -19832 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 176.5-23 chr13 48651910 48652126 + 1 NA Intergenic Intergenic -1911 NM_001308471 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 117.5-63 chr3 78361132 78361499 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -312352 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 118.5-10 chr1 152963366 152963577 + 1 NA Intergenic MER31A|LTR|ERV1 -7177 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 117.5-39 chr18 57618869 57619041 + 1 NA intron (NM_004539, intron 2 of 13) intron (NM_004539, intron 2 of 13) 2881 NM_004539 4677 Hs.465224 NM_004539 ENSG00000134440 NARS ASNRS|NARS1 asparaginyl-tRNA synthetase protein-coding 205.25-28 chr4 91327269 91327705 + 1 NA intron (NM_001145065, intron 10 of 10) MSTA-int|LTR|ERVL-MaLR 949815 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 170.75-3 chr1 28205147 28205334 + 1 NA intron (NM_014280, intron 7 of 8) intron (NM_014280, intron 7 of 8) -11304 NM_001164721 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 178.75-40 chr3 114949221 114949594 + 1 NA intron (NM_001348805, intron 3 of 10) L1ME3A|LINE|L1 -48782 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 189.5-31 chr2 162038072 162038384 + 1 NA intron (NM_001935, intron 8 of 25) intron (NM_001935, intron 8 of 25) 35987 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 138.5-4 chr1 85417092 85417310 + 1 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -12695 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 149.25-70 chr9 85729189 85729361 + 1 NA intron (NM_015239, intron 1 of 25) L1MB4|LINE|L1 12754 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 153.25-27 chr2 119579267 119579471 + 1 NA intron (NR_073132, intron 6 of 24) intron (NR_073132, intron 6 of 24) 34920 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 210.75-14 chr15 83363042 83363411 + 1 NA Intergenic Intergenic -78562 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 129.5-54 chr22 26213974 26214205 + 1 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 44615 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 157.5-75 chr4 43954809 43955103 + 1 NA Intergenic L2|LINE|L2 -61905 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 161.5-58 chr3 111749657 111749976 + 1 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 17320 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 121.75-24 chr15 62430517 62430742 + 1 NA Intergenic Intergenic 87600 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 184.5-2 chr1 43064448 43064783 + 1 NA Intergenic MER102c|DNA|hAT-Charlie -83289 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 258.25-12 chr2 184201737 184202068 + 1 NA Intergenic Intergenic -177073 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 150.25-81 chr9 95879272 95879510 + 1 NA intron (NM_020207, intron 1 of 18) intron (NM_020207, intron 1 of 18) 3383 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 170.75-23 chr14 63577998 63578258 + 1 NA Intergenic AluSg|SINE|Alu -34733 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 171.5-19 chr12 104733533 104733756 + 1 NA intron (NM_018413, intron 2 of 2) MADE1|DNA|TcMar-Mariner 142011 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 197.5-46 chr4 98355306 98355556 + 1 NA intron (NM_001100430, intron 4 of 12) intron (NM_001100430, intron 4 of 12) 94047 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 205.5-60 chr8 84578249 84578566 + 1 NA intron (NM_001354308, intron 3 of 9) MER52A|LTR|ERV1 -127520 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 144.5-91 chr5 115315502 115315717 + 1 NA Intergenic Intergenic -18955 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 191.25-23 chr14 72897994 72898389 + 1 NA Intergenic AluSx1|SINE|Alu -4075 NM_001280543 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 155.25-52 chr4 61079605 61079838 + 1 NA Intergenic L1PB4|LINE|L1 -63935 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 237.25-17 chr22 33898138 33898481 + 1 NA intron (NM_001362949, intron 1 of 15) MIR3|SINE|MIR 22119 NM_004737 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 121.25-9 chr11 23831878 23832205 + 1 NA Intergenic HAL1b|LINE|L1 -412851 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 232.5-45 chr6 125084006 125084468 + 1 NA non-coding (NR_104440, exon 7 of 7) non-coding (NR_104440, exon 7 of 7) -69536 NM_001300994 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 119.5-54 chr19 51192034 51192198 + 1 NA Intergenic L1ME2|LINE|L1 -10150 NR_110732 101928517 Hs.707693 NR_110732 ENSG00000269072 LOC101928517 - uncharacterized LOC101928517 ncRNA 170.75-62 chr6 20157256 20157575 + 1 NA intron (NM_001080480, intron 1 of 12) L1ME4c|LINE|L1 55054 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 170.25-30 chr16 82460279 82460449 + 1 NA Intergenic L2a|LINE|L2 -166605 NM_001220488 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 220.75-20 chr20 56068803 56069191 + 1 NA Intergenic Intergenic -63478 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 209.5-50 chr8 117955080 117955381 + 1 NA intron (NM_000127, intron 1 of 10) MER21C|LTR|ERVL -34317 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 168.5-49 chr2 219874669 219875091 + 1 NA Intergenic Intergenic 30009 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 173.75-16 chr14 37273613 37274112 + 1 NA intron (NM_138731, intron 7 of 13) MIRb|SINE|MIR 75925 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 160.5-28 chr17 51677524 51677741 + 1 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 242205 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 188.75-59 chr9 134818081 134818657 + 1 NA intron (NM_001278074, intron 54 of 65) CpG 31000 NR_039691 100616333 NR_039691 ENSG00000264744 MIR3689C - microRNA 3689c ncRNA 220.25-10 chr11 2611664 2612000 + 1 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 88166 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 217.5-37 chr6 22139761 22140236 + 1 NA intron (NR_034143, intron 2 of 2) AluJb|SINE|Alu 7195 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 162.5-71 chr5 91958082 91958284 + 1 NA Intergenic Charlie5|DNA|hAT-Charlie -574866 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 156.5-50 chr4 31303462 31303795 + 1 NA Intergenic Intergenic 132484 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 174.25-2 chr1 45035680 45035938 + 1 NA exon (NM_020883, exon 10 of 14) exon (NM_020883, exon 10 of 14) 23555 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 257.5 chr1 28039410 28039876 + 1 NA intron (NM_001282562, intron 3 of 16) intron (NM_001282562, intron 3 of 16) 48967 NM_001990 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 113.75-40 chr15 23839272 23839543 + 1 NA Intergenic Intergenic -135740 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 147.5-14 chr11 22358127 22358354 + 1 NA intron (NM_020346, intron 3 of 11) intron (NM_020346, intron 3 of 11) 19859 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 168.25-15 chr12 115182885 115183098 + 1 NA Intergenic MIRb|SINE|MIR -498816 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 117.75-14 chr11 92740082 92740208 + 1 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 175483 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 174.5-28 chr14 76052847 76053157 + 1 NA intron (NR_045664, intron 3 of 7) MIRb|SINE|MIR 67239 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 184.5-4 chr1 115885408 115885592 + 1 NA Intergenic L1ME1|LINE|L1 -33876 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 194.5-39 chr20 22156971 22157324 + 1 NA Intergenic Intergenic 103057 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 255.5-28 chr7 40033056 40033522 + 1 NA intron (NM_003718, intron 5 of 13) L1MC2|LINE|L1 82929 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 147.75-37 chr2 145974739 145974992 + 1 NA Intergenic Intergenic -612192 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 176.5-13 chr11 42731940 42732356 + 1 NA Intergenic Intergenic -478458 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 114.5-71 chr3 184936064 184936259 + 1 NA intron (NM_001009921, intron 33 of 46) intron (NM_001009921, intron 33 of 46) 123654 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 131.5-55 chr3 27084191 27084444 + 1 NA Intergenic Intergenic 132206 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 143.5-76 chr4 68101339 68101485 + 1 NA intron (NM_207407, intron 1 of 9) intron (NM_207407, intron 1 of 9) 28457 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 190.5-34 chr2 54556166 54556370 + 1 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -2126 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 137.5-101 chr6 68078351 68078750 + 1 NA Intergenic Intergenic 23199 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 153.25-48 chr6 53543131 53543393 + 1 NA intron (NM_001498, intron 1 of 15) intron (NM_001498, intron 1 of 15) 1839 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 198.25-16 chr17 64145094 64145375 + 1 NA promoter-TSS (NR_132278) promoter-TSS (NR_132278) -736 NR_132278 105376843 Hs.405444 NR_132278 ENSG00000266402 SNHG25 - small nucleolar RNA host gene 25 ncRNA 116.25-96 chr8 132421792 132421996 + 1 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 25368 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 113.25-26 chr12 2236430 2236678 + 1 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -13073 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 133.25-2 chr1 118177763 118178065 + 1 NA intron (NM_206996, intron 1 of 48) L1MA4|LINE|L1 7314 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 171.25-60 chr8 134566605 134566818 + 1 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -31360 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 124.25-45 chr2 22480237 22480368 + 1 NA Intergenic Intergenic -56177 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 191.5-32 chr2 56700274 56700648 + 1 NA Intergenic Intergenic -514691 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 124.75-10 chr10 11135550 11135751 + 1 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -29231 NM_001326348 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 227.25-31 chr6 45810915 45811390 + 1 NA Intergenic Intergenic 126445 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 121.75-94 chr8 139364590 139364865 + 1 NA Intergenic Intergenic 338396 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 214.5-62 chr9 79270537 79270958 + 1 NA Intergenic MER5A1|DNA|hAT-Charlie -125081 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 172.5-93 chrX 39333930 39334290 + 1 NA Intergenic Intergenic -6748 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 160.25-60 chr8 132670811 132671071 + 1 NA intron (NR_135907, intron 1 of 10) L1M5|LINE|L1 4604 NR_135905 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 130.25-89 chr8 129366419 129366686 + 1 NA intron (NR_130920, intron 3 of 3) MER112|DNA|hAT-Charlie 117590 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 115.75-17 chr12 84971000 84971150 + 1 NA Intergenic Intergenic -58246 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 156.5-32 chr2 47095858 47096143 + 1 NA intron (NM_001163561, intron 5 of 6) MLT1J|LTR|ERVL-MaLR 59308 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 137.75-5 chr10 22737642 22738057 + 1 NA Intergenic MLT1H|LTR|ERVL-MaLR -23271 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 251.5-16 chr2 40146781 40147143 + 1 NA intron (NM_001351483, intron 7 of 8) intron (NM_001351483, intron 7 of 8) 229328 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 149.5-35 chr15 96001705 96001894 + 1 NA Intergenic MIR|SINE|MIR 126042 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 146.25-27 chr15 77474178 77474392 + 1 NA intron (NM_001304505, intron 6 of 9) intron (NM_001304505, intron 6 of 9) -51310 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 128.5-4 chr1 188155371 188155555 + 1 NA Intergenic Intergenic 711835 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 139.25-69 chr5 149177407 149177771 + 1 NA intron (NM_001370418, intron 1 of 18) intron (NM_001370418, intron 1 of 18) 35858 NM_001301028 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 218.5-22 chr2 45357497 45357822 + 1 NA Intergenic Intergenic -102718 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 115.25-82 chr6 49706943 49707077 + 1 NA intron (NM_001261822, intron 3 of 8) intron (NM_001261822, intron 3 of 8) 6533 NM_001142408 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 155.5-56 chr2 70664360 70664629 + 1 NA intron (NM_001617, intron 15 of 15) intron (NM_001617, intron 15 of 15) 103221 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 127.5-65 chr2 127343177 127343401 + 1 NA promoter-TSS (NM_006609) promoter-TSS (NM_006609) -60 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 176.25-13 chr12 3167201 3167514 + 1 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 89978 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 163.5-68 chr5 73919562 73919860 + 1 NA intron (NM_001177693, intron 35 of 35) intron (NM_001177693, intron 35 of 35) 106165 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 116.5-104 chr6 132165718 132166026 + 1 NA intron (NR_038981, intron 2 of 2) L1MEf|LINE|L1 31894 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 165.75-43 chr4 30850839 30851067 + 1 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 130584 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 210.5-62 chr9 76584086 76584332 + 1 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 83576 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 165.75-2 chr1 48659470 48659868 + 1 NA intron (NM_001323575, intron 7 of 12) intron (NM_001323575, intron 7 of 12) 117222 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 196.5-23 chr12 37957962 37958196 + 1 NA Intergenic ALR/Alpha|Satellite|centr -358695 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 177.5-43 chr21 27583294 27583515 + 1 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -138975 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 144.5-108 chr8 122874774 122875073 + 1 NA intron (NM_001362797, intron 3 of 4) MIR|SINE|MIR 93268 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 306.75 chr11 104081572 104082107 + 1 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 45199 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 116.75-81 chr8 88877053 88877181 + 1 NA Intergenic Intergenic -549634 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 153.5-56 chr22 24896211 24896373 + 1 NA intron (NM_001098498, intron 17 of 23) L1MC5|LINE|L1 50403 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 209.5-3 chr11 64388153 64388424 + 1 NA Intergenic MLT1J|LTR|ERVL-MaLR 19686 NR_031602 100302280 NR_031602 ENSG00000221273 MIR1237 MIRN1237|hsa-mir-1237 microRNA 1237 ncRNA 251.5-14 chr19 33876516 33876873 + 1 NA Intergenic Intergenic 79824 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 125.25-66 chr5 131106372 131106630 + 1 NA Intergenic L1MA8|LINE|L1 58755 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 124.5-15 chr10 72593683 72593848 + 1 NA intron (NM_006077, intron 1 of 11) L1M4c|LINE|L1 32314 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 125.5-107 chr5 127069955 127070134 + 1 NA intron (NM_001164479, intron 2 of 4) intron (NM_001164479, intron 2 of 4) 3448 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 194.5-52 chr3 197050608 197050898 + 1 NA intron (NM_001366216, intron 23 of 23) L1MA9|LINE|L1 -20936 NM_033316 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 160.75-35 chr2 220783001 220783198 + 1 NA Intergenic MER54B|LTR|ERVL 789205 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 150.25-30 chr15 56853961 56854117 + 1 NA Intergenic L1M5|LINE|L1 -64051 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 132.5-43 chr18 3024808 3025033 + 1 NA Intergenic Intergenic -12973 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 181.75-41 chr8 4711448 4711665 + 1 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 283358 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 190.75-46 chr6 48437698 48437924 + 1 NA Intergenic Intergenic -369122 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 113.75-104 chr8 54725477 54725775 + 1 NA Intergenic Intergenic 109530 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 201.5-67 chr8 139492898 139493188 + 1 NA Intergenic L2a|LINE|L2 210080 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 176.5-6 chr10 58007188 58007460 + 1 NA Intergenic Intergenic 260570 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 305.25-19 chr8 80209266 80209631 + 1 NA Intergenic L4_A_Mam|LINE|RTE-X -31941 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 122.75-28 chr17 33119284 33119486 + 1 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 126534 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 186.5-51 chr6 44724150 44724472 + 1 NA Intergenic Intergenic -172430 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 139.5-76 chr5 21091821 21091999 + 1 NA Intergenic Intergenic -367570 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 138.5-104 chr8 77810671 77810915 + 1 NA Intergenic L1MA5A|LINE|L1 360096 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 117.5-77 chr5 117848831 117848997 + 1 NA intron (NR_104997, intron 1 of 2) L1MC4|LINE|L1 118553 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 145.5-98 chr9 33846532 33846776 + 1 NA intron (NM_017811, intron 1 of 4) Cheshire|DNA|hAT-Charlie 29494 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 136.75-78 chr5 35640997 35641184 + 1 NA intron (NM_144722, intron 2 of 9) Charlie24|DNA|hAT-Charlie 23227 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 193.5-45 chr3 152012982 152013344 + 1 NA Intergenic L1ME4b|LINE|L1 -84988 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 173.25-54 chr5 64781033 64781455 + 1 NA intron (NM_001297645, intron 2 of 10) intron (NM_001297645, intron 2 of 10) 12314 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 188.25-46 chr5 62983515 62983970 + 1 NA Intergenic L1M5|LINE|L1 404923 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 130.25-8 chr1 206481096 206481305 + 1 NA intron (NM_001193321, intron 12 of 20) intron (NM_001193321, intron 12 of 20) 6397 NR_106919 102466202 NR_106919 ENSG00000278465 MIR6769B hsa-mir-6769b microRNA 6769b ncRNA 126.5-90 chr5 60309454 60309616 + 1 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 63128 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 136.5-73 chr3 149063798 149064012 + 1 NA intron (NM_001318935, intron 9 of 25) intron (NM_001318935, intron 9 of 25) -22427 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 196.25-3 chr1 204060812 204061115 + 1 NA Intergenic Intergenic -12152 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box transcription factor 13 protein-coding 217.5-4 chr1 226060664 226061048 + 1 NA Intergenic Intergenic -1860 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 246.5-10 chr2 184655931 184656307 + 1 NA intron (NM_194250, intron 1 of 3) MER89-int|LTR|ERV1 57590 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 316.5-17 chr8 133905574 133906498 + 1 NA Intergenic Intergenic 19540 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 137.25-5 chr1 119661279 119661651 + 1 NA Intergenic Intergenic -13199 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 169.5-6 chr1 151455473 151455714 + 1 NA intron (NM_001194938, intron 1 of 17) Charlie1a|DNA|hAT-Charlie 3901 NM_145796 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 121.5-51 chr18 7498800 7498992 + 1 NA Intergenic Intergenic -37890 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 164.75-32 chr2 4531578 4531857 + 1 NA Intergenic Intergenic 124505 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 213.5-39 chr5 32158521 32158817 + 1 NA intron (NM_022130, intron 1 of 3) intron (NM_022130, intron 1 of 3) 15650 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 186.5 chr1 22127128 22127639 + 1 NA intron (NM_030761, intron 2 of 4) intron (NM_030761, intron 2 of 4) 15714 NM_030761 54361 Hs.25766 NM_030761 ENSG00000162552 WNT4 SERKAL|WNT-4 Wnt family member 4 protein-coding 150.5-23 chr13 34375350 34375604 + 1 NA intron (NR_146542, intron 1 of 3) HAL1M8|LINE|L1 27434 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 117.75 chr1 45878348 45878636 + 1 NA intron (NM_001324321, intron 1 of 28) L1ME2z|LINE|L1 14144 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 124.5-76 chr4 36541123 36541327 + 1 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 100675 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 167.25-16 chr10 65412501 65412831 + 1 NA Intergenic Intergenic -158759 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 174.5-43 chr2 166712964 166713236 + 1 NA Intergenic L1MB1|LINE|L1 -175387 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 247.75-21 chr4 162759096 162759565 + 1 NA Intergenic Intergenic 334298 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 127.5-116 chr7 23571864 23572030 + 1 NA Intergenic L1ME3Cz|LINE|L1 14580 NR_002711 1197 Hs.632635 NR_002711 CLK2P1 CLK2P CDC like kinase 2, pseudogene 1 pseudo 172.5-46 chr3 50028434 50028771 + 1 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) -60317 NM_005778 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 138.25-35 chr17 55073446 55073806 + 1 NA intron (NM_178509, intron 13 of 17) intron (NM_178509, intron 13 of 17) -104841 NM_001162862 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 189.5-44 chr4 57107567 57108087 + 1 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -1935 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 177.5-64 chr7 158880111 158880374 + 1 NA intron (NM_001350915, intron 5 of 23) intron (NM_001350915, intron 5 of 23) 23684 NM_001350918 55112 Hs.389945 NM_018051 ENSG00000126870 WDR60 FAP163|SRPS6|SRTD8 WD repeat domain 60 protein-coding 200.75-17 chr17 47387575 47387810 + 1 NA intron (NM_001195192, intron 12 of 21) L1M3f|LINE|L1 63737 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 126.25-100 chr9 110575420 110575640 + 1 NA intron (NM_153366, intron 1 of 47) intron (NM_153366, intron 1 of 47) 4211 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 167.75-13 chr11 126449245 126449466 + 1 NA intron (NM_001301097, intron 7 of 15) intron (NM_001301097, intron 7 of 15) 43268 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 153.5-18 chr11 76479189 76479381 + 1 NA intron (NM_001300942, intron 9 of 21) Tigger4|DNA|TcMar-Tigger 34260 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 177.75-25 chr2 112489191 112489535 + 1 NA intron (NM_153712, intron 2 of 6) Charlie5|DNA|hAT-Charlie 7207 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 344.75-3 chr22 38869560 38869961 + 1 NA intron (NM_014292, intron 4 of 4) MIR3|SINE|MIR 2456 NM_001303494 23466 Hs.592201 NM_014292 ENSG00000183741 CBX6 - chromobox 6 protein-coding 124.5-35 chr15 65578536 65578719 + 1 NA TTS (NM_016395) TTS (NM_016395) 32504 NM_001136043 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 138.75-81 chr9 35120699 35120877 + 1 NA Intergenic LTR7B|LTR|ERV1 -4926 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 138.25-52 chr21 24280807 24281167 + 1 NA Intergenic Intergenic 40390 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 177.5-63 chr7 123623311 123623685 + 1 NA intron (NR_111922, intron 1 of 4) MamTip2|DNA|hAT-Tip100 1459 NR_111922 102724555 Hs.83916 NR_111922 ENSG00000230442 LOC102724555 - uncharacterized LOC102724555 ncRNA 270.25 chr1 86423396 86423867 + 1 NA promoter-TSS (NM_006536) promoter-TSS (NM_006536) -540 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 118.75-53 chr2 124956555 124956711 + 1 NA Intergenic L1MC|LINE|L1 931346 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 113.25-31 chr12 111717760 111717954 + 1 NA intron (NM_025247, intron 7 of 20) L1MEf|LINE|L1 31804 NM_025247 80724 Hs.331141 NM_025247 ENSG00000111271 ACAD10 - acyl-CoA dehydrogenase family member 10 protein-coding 344.75 chr11 120361442 120362029 + 1 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) -23592 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 140.5-58 chr21 27763772 27763985 + 1 NA Intergenic L1MB2|LINE|L1 41499 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 215.75-6 chr14 50466733 50467044 + 1 NA intron (NM_198794, intron 10 of 31) intron (NM_198794, intron 10 of 31) 65681 NM_198794 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 195.25-32 chr4 59609205 59609547 + 1 NA Intergenic Intergenic 595803 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 151.75-34 chr17 58382114 58382359 + 1 NA intron (NM_001305544, intron 2 of 9) intron (NM_001305544, intron 2 of 9) 20485 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 121.5-12 chr10 55424422 55424569 + 1 NA intron (NM_001354404, intron 2 of 34) Zaphod|DNA|hAT-Tip100 -174547 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 117.5-27 chr15 73644098 73644253 + 1 NA Intergenic L1M4a2|LINE|L1 -10786 NM_001161363 27020 Hs.744867 NM_012428 ENSG00000156642 NPTN GP55|GP65|SDFR1|SDR1|np55|np65 neuroplastin protein-coding 141.75-63 chr4 129812399 129812569 + 1 NA intron (NR_151713, intron 5 of 16) intron (NR_151713, intron 5 of 16) 40865 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 192.25-30 chr4 157089476 157089820 + 1 NA intron (NM_000824, intron 2 of 9) intron (NM_000824, intron 2 of 9) 13245 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 177.5-11 chr11 60681988 60682212 + 1 NA intron (NR_026946, intron 6 of 6) L1M4|LINE|L1 -17512 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 187.75-39 chr4 92820697 92820910 + 1 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 516404 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 206.75-34 chr8 141328147 141328440 + 1 NA Intergenic Intergenic -12256 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 170.75-6 chr1 113888910 113889169 + 1 NA intron (NR_037864, intron 3 of 4) L1MC|LINE|L1 -1458 NM_001010922 440603 Hs.123106 NM_001010922 ENSG00000188761 BCL2L15 Bfk|C1orf178 BCL2 like 15 protein-coding 194.75-37 chr5 63131973 63132272 + 1 NA Intergenic Intergenic 553303 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 197.5-49 chr5 87902039 87902275 + 1 NA Intergenic Intergenic 240115 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 183.25-37 chr4 45847504 45847805 + 1 NA Intergenic Intergenic 276400 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 125.75-21 chr13 89328563 89328688 + 1 NA Intergenic ERVL-B4-int|LTR|ERVL -91735 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 137.5-28 chr14 51078690 51078860 + 1 NA intron (NM_015163, intron 1 of 9) L1MA9|LINE|L1 16929 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 161.75-22 chr17 32476718 32476993 + 1 NA intron (NM_002815, intron 8 of 13) AluSx1|SINE|Alu -10138 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 130.5-25 chr12 26139832 26139971 + 1 NA Intergenic L2c|LINE|L2 -14864 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 147.75-80 chr8 63829036 63829344 + 1 NA Intergenic LTR60B|LTR|ERV1 59760 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 186.75-40 chr4 75301685 75302017 + 1 NA Intergenic Intergenic -52225 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 218.25-39 chr5_GL000208v1_random 44063 44401 + 1 NA NA ALR/Alpha|Satellite|centr NA NA 169.75-29 chr17 80878687 80879009 + 1 NA intron (NM_001163034, intron 13 of 29) intron (NM_001163034, intron 13 of 29) -73216 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 132.5-16 chr11 86496785 86496939 + 1 NA intron (NM_001014811, intron 5 of 13) L1ME4a|LINE|L1 121975 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 162.5-54 chr22 34975526 34975903 + 0.75 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 22202 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 127.75-14 chr10 105269802 105269993 + 0.75 NA Intergenic Eulor6B|DNA?|DNA? 550436 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 150.75-4 chr10 60758772 60759172 + 0.75 NA Intergenic Intergenic -19359 NM_001320918 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 168.25-31 chr2 61382754 61383112 + 0.75 NA intron (NM_014709, intron 6 of 79) L2a|LINE|L2 34444 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 154.75-14 chr12 78383312 78383602 + 0.75 NA Intergenic MER115|DNA|hAT-Tip100 -23711 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 148.5-71 chr4 46550426 46550857 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -160513 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 155-5 chr1 176869898 176870185 + 0.75 NA intron (NM_207108, intron 21 of 21) intron (NM_207108, intron 21 of 21) 159404 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 207-41 chr5 8679072 8679484 + 0.75 NA Intergenic Intergenic -160454 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 120.75-2 chr1 163094463 163094710 + 0.75 NA Intergenic GA-rich|Low_complexity|Low_complexity 22681 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 126.75-78 chr5 125966142 125966528 + 0.75 NA Intergenic Intergenic -213242 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 136.25-12 chr10 92617355 92617657 + 0.75 NA intron (NM_004523, intron 9 of 21) L1MB8|LINE|L1 24376 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 128.5-12 chr11 90904528 90904774 + 0.75 NA intron (NR_104190, intron 6 of 6) L1M4|LINE|L1 -35449 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 150-12 chr1 214835913 214836356 + 0.75 NA Intergenic LTR78B|LTR|ERV1 -169408 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 118.75-79 chr4 74990639 74990901 + 0.75 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -20408 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 172.75-28 chr4 43545260 43545672 + 0.75 NA Intergenic MER63B|DNA|hAT-Blackjack -52923 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 128.75-27 chr14 86488545 86488775 + 0.75 NA Intergenic Intergenic -417118 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 184.5-7 chr1 245946265 245946820 + 0.75 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 470870 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 126.25-2 chr1 48329300 48329619 + 0.75 NA intron (NM_001286238, intron 11 of 12) intron (NM_001286238, intron 11 of 12) 106743 NM_001011547 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 134.5-24 chr14 49824458 49824801 + 0.75 NA intron (NM_001301732, intron 16 of 31) FLAM_C|SINE|Alu 28159 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 151.75-60 chr4 56300006 56300300 + 0.75 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 87338 NM_001323892 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 116.5-130 chr9 96174936 96175129 + 0.75 NA Intergenic Intergenic -58621 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 161-58 chr6 67817502 67817768 + 0.75 NA Intergenic LTR86A2|LTR|ERVL -237716 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 113.75-113 chr8 119125740 119126072 + 0.75 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -57124 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 193-36 chr21 28352204 28352680 + 0.75 NA Intergenic Intergenic -123775 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 217.75-11 chr15 38677804 38678200 + 0.75 NA Intergenic HERV16-int|LTR|ERVL -18596 NR_160786 189.5-25 chr2 19867850 19868218 + 0.75 NA promoter-TSS (NR_033875) promoter-TSS (NR_033875) -820 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 152.5-35 chr14 73359223 73359455 + 0.75 NA intron (NM_001320114, intron 3 of 11) AluSz6|SINE|Alu 99241 NM_001320114 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 118.5-26 chr11 59656275 59656474 + 0.75 NA intron (NM_152716, intron 6 of 18) intron (NM_152716, intron 6 of 18) 12663 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 126.75-38 chr18 22881747 22881952 + 0.75 NA Intergenic L1ME1|LINE|L1 -51479 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 172.25-8 chr10 107580215 107580543 + 0.75 NA Intergenic L1MD3|LINE|L1 -415673 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 169.25-56 chr9 929058 929471 + 0.75 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -47391 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 163.25-34 chr17 68395395 68395750 + 0.75 NA intron (NM_001352899, intron 10 of 12) intron (NM_001352899, intron 10 of 12) -18051 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 204.75-8 chr12 80018502 80018926 + 0.75 NA Intergenic Intergenic -80823 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 116-56 chr5 53793143 53793366 + 0.75 NA intron (NR_147168, intron 1 of 3) intron (NR_147168, intron 1 of 3) 26428 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 143-35 chr2 63692913 63693135 + 0.75 NA Intergenic MIR|SINE|MIR 103873 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 131.25-73 chr6 11797807 11798059 + 0.75 NA Intergenic MIR|SINE|MIR -18886 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 166-16 chr11 88465786 88466249 + 0.75 NA Intergenic Intergenic -38559 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 185.75 chr1 41938890 41939261 + 0.75 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -20153 NM_024503 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 123.5-94 chr6 56411441 56411780 + 0.75 NA Intergenic AluSz|SINE|Alu -17482 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 252.75-19 chr3 44977209 44977741 + 0.75 NA intron (NR_023353, intron 1 of 6) intron (NR_023353, intron 1 of 6) 1226 NR_023353 23016 Hs.719958 NM_015004 ENSG00000075914 EXOSC7 EAP1|RRP42|Rrp42p|hRrp42p|p8 exosome component 7 protein-coding 280.5-14 chr2 54317105 54317634 + 0.75 NA Intergenic Intergenic -13515 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 198.75-24 chr2 95213115 95213524 + 0.75 NA Intergenic Intergenic 47510 NM_001282398 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 173.75-49 chr7 106103044 106103474 + 0.75 NA intron (NM_182715, intron 1 of 4) L1ME3F|LINE|L1 9053 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 114.25-94 chr6 169512822 169513130 + 0.75 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 189053 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 146.5-74 chr5 95827353 95827760 + 0.75 NA Intergenic L2c|LINE|L2 -4683 NM_001243659 2745 Hs.28988 NM_002064 ENSG00000173221 GLRX GRX|GRX1 glutaredoxin protein-coding 189.25-37 chr5 77235517 77235968 + 0.75 NA intron (NM_001029853, intron 1 of 20) L2a|LINE|L2 25062 NM_003719 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 216.25-44 chr8 119249503 119249972 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -2880 NR_149114 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 120.5-3 chr1 152009946 152010155 + 0.75 NA Intergenic Intergenic -8228 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - NBPF member 18, pseudogene pseudo 199.25-41 chr8 142929180 142929638 + 0.75 NA Intergenic L1MEd|LINE|L1 -11566 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 116.75-65 chr6 35732827 35733073 + 0.75 NA intron (NR_027117, intron 4 of 9) AluSx|SINE|Alu 3997 NR_027117 285847 Hs.407190 NR_027117 LOC285847 - uncharacterized LOC285847 ncRNA 126.75-67 chr4 92784676 92784902 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 480390 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 133.25-3 chr1 173781947 173782143 + 0.75 NA intron (NM_014458, intron 10 of 11) intron (NM_014458, intron 10 of 11) 42087 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 116.25-39 chr18 2063682 2063905 + 0.75 NA Intergenic L1MA8|LINE|L1 507712 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 195.5-77 chr6 149060316 149060756 + 0.75 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -27875 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 169-2 chr1 67283762 67284034 + 0.75 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -23466 NM_001319233 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 244.5-25 chr3 112878971 112879369 + 0.75 NA Intergenic Intergenic -33220 NM_001199215 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 203.5-31 chr3 113953632 113954105 + 0.75 NA exon (NM_001320468, exon 3 of 5) exon (NM_001320468, exon 3 of 5) 5855 NR_135271 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 155-31 chr21 17137270 17137765 + 0.75 NA Intergenic AluY|SINE|Alu -301373 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 129.75-34 chr17 73402493 73402739 + 0.75 NA intron (NM_001144952, intron 18 of 44) AluJb|SINE|Alu -90615 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 134-13 chr10 22660878 22661253 + 0.75 NA intron (NM_005028, intron 1 of 9) L1MC1|LINE|L1 53043 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 293.25-11 chr20 52115699 52116208 + 0.75 NA intron (NM_199427, intron 5 of 8) AluSp|SINE|Alu -10469 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 165.75-10 chr10 121492095 121492407 + 0.75 NA intron (NR_073009, intron 12 of 16) intron (NR_073009, intron 12 of 16) 39063 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 195-29 chr2 127220805 127221126 + 0.75 NA promoter-TSS (NM_001367502) promoter-TSS (NM_001367502) -666 NM_001367502 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 149.75-38 chr22 35264317 35264568 + 0.75 NA intron (NR_027780, intron 5 of 11) intron (NR_027780, intron 5 of 11) 6949 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 116.75-85 chr9 35623260 35623566 + 0.75 NA Intergenic Intergenic -5000 NM_001782 971 Hs.116481 NM_001782 ENSG00000137101 CD72 CD72b|LYB2 CD72 molecule protein-coding 263.75-6 chr2 153928321 153928691 + 0.75 NA intron (NM_052917, intron 2 of 12) intron (NM_052917, intron 2 of 12) -15888 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 120.25-52 chr4 39881716 39882064 + 0.75 NA intron (NM_001100399, intron 17 of 32) THE1B|LTR|ERVL-MaLR 96021 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 190-17 chr17 52809318 52809663 + 0.75 NA Intergenic L1ME3|LINE|L1 -52631 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 153.5-94 chr8 120430385 120430674 + 0.75 NA intron (NM_014078, intron 3 of 6) intron (NM_014078, intron 3 of 6) 14621 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 205.75-8 chr12 17751507 17751820 + 0.75 NA Intergenic Intergenic 78364 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 138-36 chr2 64497625 64497817 + 0.75 NA intron (NR_147011, intron 2 of 2) intron (NR_147011, intron 2 of 2) 11368 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 144-57 chr5 120159 120508 + 0.75 NA intron (NM_052909, intron 2 of 19) intron (NM_052909, intron 2 of 19) 28165 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 117.75-7 chr10 37319320 37319541 + 0.75 NA intron (NR_104061, intron 3 of 4) L2|LINE|L2 10244 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 140.25-83 chr7 7401498 7401736 + 0.75 NA intron (NM_001037763, intron 27 of 34) L2a|LINE|L2 134256 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 127-38 chr17 65736031 65736344 + 0.75 NA intron (NR_126542, intron 2 of 5) L2a|LINE|L2 90264 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 121.25-77 chr8 49144614 49144921 + 0.75 NA Intergenic L1ME2|LINE|L1 72423 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 204.25-3 chr1 163308510 163308888 + 0.75 NA intron (NM_001254748, intron 1 of 5) intron (NM_001254748, intron 1 of 5) 13092 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 123.5-61 chr21 33988854 33989166 + 0.75 NA Intergenic MIRb|SINE|MIR 12628 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 164.5-75 chr5 169485217 169485674 + 0.75 NA Intergenic L1ME1|LINE|L1 -98328 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 145-59 chr7 17528294 17528679 + 0.75 NA intron (NR_110013, intron 1 of 3) AluJb|SINE|Alu 30423 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 167.75-48 chr4 30579393 30579753 + 0.75 NA Intergenic L1MC5a|LINE|L1 -140796 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 121-24 chr14 105169901 105170260 + 0.75 NA Intergenic Intergenic -1304 NM_002226 3714 Hs.433445 NM_002226 ENSG00000184916 JAG2 HJ2|SER2 jagged canonical Notch ligand 2 protein-coding 167-38 chr2 225270567 225270908 + 0.75 NA Intergenic Intergenic -128973 NM_001371273 123.25-48 chr20 51051525 51051816 + 0.75 NA Intergenic Intergenic -28563 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 119.75-14 chr10 84223088 84223370 + 0.75 NA intron (NM_001284223, intron 2 of 3) MIR|SINE|MIR 2315 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 117.25-86 chr7 31904672 31904908 + 0.75 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 165617 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 137-70 chr8 131009630 131009971 + 0.75 NA intron (NM_001115, intron 1 of 17) L2c|LINE|L2 31109 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 145.25-61 chr4 181847471 181847769 + 0.75 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat -17647 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 202.25-14 chr17 62961138 62961492 + 0.75 NA Intergenic Intergenic -4920 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 175.5-57 chr5 19732548 19732848 + 0.75 NA intron (NM_001349559, intron 4 of 12) MER52-int|LTR|ERV1 153574 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 157.25-22 chr12 61735629 61736054 + 0.75 NA intron (NM_178539, intron 4 of 4) L1MEg|LINE|L1 456998 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 194.5-84 chrX 51021413 51021852 + 0.75 NA Intergenic LTR49|LTR|ERV1 110897 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 177.25-45 chr6 70874770 70875207 + 0.75 NA intron (NM_080742, intron 2 of 3) L1M4|LINE|L1 82072 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 114-42 chr17 64501773 64502072 + 0.75 NA promoter-TSS (NR_039969) promoter-TSS (NR_039969) -609 NR_039969 100616408 NR_039969 ENSG00000284368 MIR5047 - microRNA 5047 ncRNA 136.75-104 chr9 35708763 35709121 + 0.75 NA intron (NM_006289, intron 33 of 56) intron (NM_006289, intron 33 of 56) 1799 NR_106911 102465513 NR_106911 ENSG00000284195 MIR6852 hsa-mir-6852 microRNA 6852 ncRNA 124-23 chr16 85903633 85903927 + 0.75 NA intron (NM_001363907, intron 2 of 8) MIR|SINE|MIR 765 NM_001363908 3394 Hs.137427 NM_002163 ENSG00000140968 IRF8 H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8 interferon regulatory factor 8 protein-coding 198-5 chr10 23565011 23565286 + 0.75 NA Intergenic L1MD1|LINE|L1 125879 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 118.75-96 chr8 67633101 67633308 + 0.75 NA intron (NM_020361, intron 1 of 10) L1MEd|LINE|L1 113156 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 119.25-8 chr10 31845117 31845456 + 0.75 NA intron (NM_001270696, intron 6 of 17) L1MDa|LINE|L1 63640 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 122.25-19 chr11 83152786 83153128 + 0.75 NA Intergenic AluSx1|SINE|Alu -4174 NM_001346415 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 279.25-23 chr9 29322296 29322811 + 0.75 NA Intergenic Intergenic -108952 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 136.75-5 chr1 182960903 182961111 + 0.75 NA Intergenic Intergenic -7841 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 245.75-9 chr17 61028204 61028642 + 0.75 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 339281 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 187.75-50 chr7 134509544 134509945 + 0.75 NA Intergenic Intergenic -17823 NM_020299 57016 Hs.116724 NM_020299 ENSG00000198074 AKR1B10 AKR1B11|AKR1B12|ALDRLn|ARL-1|ARL1|HIS|HSI aldo-keto reductase family 1 member B10 protein-coding 187.5-30 chr18 6638508 6638946 + 0.75 NA Intergenic Intergenic -90989 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 117.75-75 chr7 11382939 11383165 + 0.75 NA intron (NM_015204, intron 22 of 26) L1ME3Cz|LINE|L1 409180 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 132-38 chr2 141758403 141758791 + 0.75 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 373104 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 202.75-5 chr11 15100367 15100755 + 0.75 NA Intergenic Intergenic -11863 NM_001031853 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 127.75-55 chr3 106140798 106141049 + 0.75 NA Intergenic MER92-int|LTR|ERV1 -271522 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 142.75-78 chr6 143212656 143212877 + 0.75 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 47984 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 114.75-89 chr6 109383447 109383692 + 0.75 NA promoter-TSS (NM_001142404) promoter-TSS (NM_001142404) -757 NM_001142401 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 155-15 chr12 113217077 113217310 + 0.75 NA intron (NM_001330452, intron 1 of 4) intron (NM_001330452, intron 1 of 4) 3901 NM_138451 115811 Hs.568276 NM_138451 ENSG00000166578 IQCD 4933433C09Rik|CFAP84|DRC10 IQ motif containing D protein-coding 124.75-30 chr16 9392302 9392576 + 0.75 NA intron (NR_135195, intron 1 of 2) MLT1F|LTR|ERVL-MaLR 36851 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 149.25-43 chr3 98214186 98214430 + 0.75 NA Intergenic Intergenic 45608 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 191.75-42 chr7 126996447 126996820 + 0.75 NA intron (NM_001371085, intron 3 of 10) L1MB3|LINE|L1 61551 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 144.25-80 chr8 130278195 130278587 + 0.75 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 18142 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 171.75-62 chr8 132607434 132607788 + 0.75 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -46132 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 118.5-30 chr12 60867304 60867632 + 0.75 NA Intergenic Intergenic 1178098 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 117.5-75 chr5 38554558 38554793 + 0.75 NA intron (NM_002310, intron 1 of 19) intron (NM_002310, intron 1 of 19) 1971 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 182.75-58 chr8 132945366 132945702 + 0.75 NA intron (NM_003235, intron 26 of 47) L2b|LINE|L2 78576 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 235.25-10 chr14 58996246 58996832 + 0.75 NA intron (NR_110547, intron 4 of 5) (TAT)n|Simple_repeat|Simple_repeat 168251 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 122-10 chr10 68662758 68662994 + 0.75 NA intron (NM_030625, intron 6 of 11) AluJr|SINE|Alu -58363 NM_001282960 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 131.75-25 chr13 37588593 37588792 + 0.75 NA intron (NM_001286667, intron 4 of 18) intron (NM_001286667, intron 4 of 18) 10076 NM_001330517 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 121.75-69 chr5 56907148 56907431 + 0.75 NA Intergenic L1ME3G|LINE|L1 -1971 NM_001323022 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 253.75-20 chr8 9979548 9980101 + 0.75 NA Intergenic Intergenic -74468 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 123-50 chr6 14381972 14382327 + 0.75 NA Intergenic Intergenic -96695 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 124.25-60 chr3 16107010 16107270 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -67540 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 163.25-57 chr5 61165432 61165900 + 0.75 NA intron (NR_109908, intron 1 of 3) intron (NR_109908, intron 1 of 3) -3198 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 132.25-36 chr17 61177213 61177472 + 0.75 NA intron (NM_001330413, intron 23 of 25) L1ME1|LINE|L1 190362 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 214.5-24 chr2 55991048 55991575 + 0.75 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -2252 NR_029629 406998 NR_029629 ENSG00000207798 MIR216A MIR216|MIRN216|MIRN216A|miRNA216|mir-216|mir-216a microRNA 216a ncRNA 113-70 chr4 98400925 98401234 + 0.75 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 139695 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 215.25-26 chr4 119172599 119173049 + 0.75 NA intron (NM_016599, intron 5 of 5) LTR8|LTR|ERV1 37040 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 201.75-28 chr4 64020460 64020778 + 0.75 NA Intergenic Intergenic 388831 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 176.25-50 chr3 197389928 197390320 + 0.75 NA Intergenic Intergenic -90803 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 159-69 chr9 68767759 68768166 + 0.75 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -12103 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 113-4 chr1 70148512 70148738 + 0.75 NA exon (NM_017768, exon 14 of 15) exon (NM_017768, exon 14 of 15) 56954 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 266.75-8 chr5 111115087 111115565 + 0.75 NA intron (NM_139281, intron 16 of 22) MIRb|SINE|MIR 23154 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 167.25-64 chr5 79074457 79074743 + 0.75 NA intron (NM_001178005, intron 1 of 6) intron (NM_001178005, intron 1 of 6) 4833 NM_001178005 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 172.25-77 chr9 101834812 101835094 + 0.75 NA Intergenic MER44D|DNA|TcMar-Tigger -96373 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 114.25-88 chr6 7025270 7025489 + 0.75 NA Intergenic Intergenic -82364 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 141.75-54 chr3 73626969 73627221 + 0.75 NA non-coding (NR_046681, exon 2 of 2) non-coding (NR_046681, exon 2 of 2) -2154 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 177.75-22 chr2 35652213 35652726 + 0.75 NA Intergenic L1MC4|LINE|L1 181064 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 187.5-89 chr8 130986706 130987162 + 0.75 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 53975 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 140.5-68 chr4 6936236 6936474 + 0.75 NA intron (NM_020773, intron 2 of 13) L1MC1|LINE|L1 -17811 NM_001330638 57533 Hs.518611 NM_020773 ENSG00000132405 TBC1D14 - TBC1 domain family member 14 protein-coding 125-13 chr10 48792332 48792570 + 0.75 NA intron (NM_020945, intron 23 of 61) intron (NM_020945, intron 23 of 61) 106988 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 113.5 chr1 42580127 42580310 + 0.75 NA intron (NM_001080850, intron 8 of 16) LSU-rRNA_Hsa|rRNA|rRNA 47198 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 209-42 chr9 32358752 32359161 + 0.75 NA Intergenic L1MB8|LINE|L1 -25647 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 129.75-21 chr13 51155013 51155307 + 0.75 NA intron (NR_102431, intron 1 of 4) intron (NR_102431, intron 1 of 4) 17062 NR_102432 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 142.75-89 chr8 110569987 110570248 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 457316 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 156.25-17 chr13 56127597 56127834 + 0.75 NA Intergenic Intergenic 953261 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 163.75-33 chr2 129710389 129710763 + 0.75 NA Intergenic LTR49|LTR|ERV1 166915 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 126-15 chr11 8537670 8537969 + 0.75 NA intron (NM_030906, intron 1 of 13) AluSx|SINE|Alu 56157 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 120-48 chr2 76407203 76407400 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 -578664 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 191.25-7 chr10 10798396 10798814 + 0.75 NA promoter-TSS (NM_001326328) promoter-TSS (NM_001326328) -120 NM_001326328 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 122.75-39 chr19 43679769 43679933 + 0.75 NA Intergenic AluSx3|SINE|Alu -9505 NM_001005376 5329 Hs.466871 NM_002659 ENSG00000011422 PLAUR CD87|U-PAR|UPAR|URKR plasminogen activator, urokinase receptor protein-coding 113.5-54 chr2 30667995 30668351 + 0.75 NA Intergenic AluSz|SINE|Alu 139273 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 141.5-61 chr2 105026185 105026444 + 0.75 NA intron (NR_110603, intron 1 of 2) CR1_Mam|LINE|CR1 -11755 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 137.5-32 chr14 70104822 70105028 + 0.75 NA intron (NM_033262, intron 2 of 7) L1MEf|LINE|L1 -24708 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 137-38 chr2 133109534 133109729 + 0.75 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -156564 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 165.5-18 chr12 41462349 41462658 + 0.75 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 24764 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 125.25 chr1 48833461 48833706 + 0.75 NA intron (NR_136623, intron 5 of 12) MLT1-int|LTR|ERVL-MaLR -56614 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 126.5-122 chr8 141834951 141835166 + 0.75 NA Intergenic L1ME2|LINE|L1 -48745 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 199.25-43 chr9 117354164 117354493 + 0.75 NA intron (NM_014010, intron 1 of 21) L2c|LINE|L2 60729 NM_001365068 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 112.75-19 chr11 19130168 19130334 + 0.75 NA intron (NM_001001483, intron 1 of 15) L1MEc|LINE|L1 13083 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 157.25-50 chr3 78356141 78356420 + 0.75 NA Intergenic L2|LINE|L2 -307317 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 150.25-44 chr2 231380424 231380695 + 0.75 NA Intergenic Intergenic -15151 NM_145236 93010 Hs.299329 NM_145236 ENSG00000156966 B3GNT7 beta3GnT7 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 protein-coding 162.75-31 chr17 51797470 51797730 + 0.75 NA intron (NM_001082533, intron 4 of 9) AluSg|SINE|Alu 361114 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 126.75-32 chr17 17018559 17018761 + 0.75 NA Intergenic Intergenic -23797 NM_001364716 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 117.25-70 chr4 106710015 106710246 + 0.75 NA Intergenic Intergenic 276506 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 165.25-18 chr17 48397817 48398166 + 0.75 NA intron (NM_001075099, intron 1 of 12) intron (NM_001075099, intron 1 of 12) 32223 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 113.25-16 chr10 101729184 101729416 + 0.75 NA Intergenic L1M3|LINE|L1 -34005 NM_001323541 6468 Hs.500822 NM_022039 ENSG00000107829 FBXW4 DAC|FBW4|FBWD4|SHFM3|SHSF3 F-box and WD repeat domain containing 4 protein-coding 131.5-68 chr4 107974140 107974462 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -15413 NM_001184705 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 140.75-5 chr1 195017502 195017755 + 0.75 NA Intergenic L2a|LINE|L2 1071087 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 120-55 chr20 47665073 47665368 + 0.75 NA exon (NM_001161841, exon 14 of 21) exon (NM_001161841, exon 14 of 21) 120844 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 212.75-14 chr2 35508557 35509107 + 0.75 NA Intergenic Intergenic 37427 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 179.25-47 chr7 54585565 54585934 + 0.75 NA Intergenic Intergenic 28779 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 143.5-17 chr11 50225288 50225707 + 0.75 NA Intergenic Intergenic 72965 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 123.25-59 chr3 194987967 194988152 + 0.75 NA Intergenic MIR1_Amn|SINE|MIR -106529 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 147.25-36 chr20 28813842 28814270 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -211391 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 123-38 chr3 180620053 180620324 + 0.75 NA intron (NM_181426, intron 14 of 19) intron (NM_181426, intron 14 of 19) 18025 NM_001042601 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 182.25-55 chr8 23713474 23713904 + 0.75 NA Intergenic L1MC4a|LINE|L1 -7091 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 136-26 chr18 67423263 67423513 + 0.75 NA Intergenic Intergenic -93158 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 200.75-11 chr13 43848553 43849077 + 0.75 NA intron (NM_144974, intron 6 of 6) intron (NM_144974, intron 6 of 6) -30363 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 159-56 chr7 6684393 6684664 + 0.75 NA Intergenic MSTC|LTR|ERVL-MaLR 22419 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 138.75-11 chr12 38661872 38662147 + 0.75 NA intron (NM_153634, intron 19 of 19) L1MA5|LINE|L1 243582 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 232-28 chr7 43224958 43225502 + 0.75 NA intron (NM_015052, intron 2 of 29) L1ME3Cz|LINE|L1 74335 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 210.25 chr1 30833693 30834292 + 0.75 NA non-coding (NR_146732, exon 3 of 3) non-coding (NR_146732, exon 3 of 3) 9340 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 191.25-55 chr6 135848256 135848568 + 0.75 NA Intergenic L2a|LINE|L2 -3289 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 164.5-103 chr9 100423599 100424062 + 0.75 NA Intergenic Intergenic -3383 NM_080655 91283 Hs.530272 NM_080655 ENSG00000066697 MSANTD3 C9orf30|L8 Myb/SANT DNA binding domain containing 3 protein-coding 150.25-45 chr20 59285118 59285352 + 0.75 NA Intergenic Intergenic -15376 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 155-29 chr2 200533012 200533299 + 0.75 NA intron (NM_001160046, intron 2 of 8) intron (NM_001160046, intron 2 of 8) 6948 NM_152524 151246 Hs.655182 NM_152524 ENSG00000163535 SGO2 SGOL2|TRIPIN shugoshin 2 protein-coding 150-88 chr9 135158683 135158949 + 0.75 NA Intergenic Intergenic -22793 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 122.25-9 chr10 71469103 71469306 + 0.75 NA intron (NM_052836, intron 3 of 12) L1ME1|LINE|L1 42716 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 145.75-66 chr7 44149379 44149775 + 0.75 NA intron (NM_033507, intron 6 of 9) intron (NM_033507, intron 6 of 9) -2944 NM_001354801 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 176.25-7 chr10 14520483 14520784 + 0.75 NA 3' UTR (NM_001320741, exon 4 of 4) 3' UTR (NM_001320741, exon 4 of 4) 12081 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 141-26 chr16 62237604 62237911 + 0.75 NA Intergenic L1ME1|LINE|L1 -201319 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 175.75-19 chr2 77423410 77423764 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 98789 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 179.5-90 chr7 157144946 157145377 + 0.75 NA intron (NM_014671, intron 1 of 22) AluSx3|SINE|Alu 6235 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 133.5-112 chr8 51789079 51789276 + 0.75 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 20268 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 121-20 chr14 47932150 47932465 + 0.75 NA Intergenic Intergenic -137293 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 153.75-13 chr11 45806552 45806876 + 0.75 NA intron (NM_001145265, intron 2 of 2) MIR|SINE|MIR 1624 NM_018389 55343 Hs.12211 NM_018389 ENSG00000181830 SLC35C1 CDG2C|FUCT1 solute carrier family 35 member C1 protein-coding 121.25-10 chr11 45362980 45363246 + 0.75 NA Intergenic Intergenic 7742 NR_120558 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 222.5-9 chr10 114779833 114780238 + 0.75 NA TTS (NR_120628) TTS (NR_120628) -11731 NM_001322886 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 155.5-42 chr17 55363295 55363610 + 0.75 NA Intergenic MLT2B2|LTR|ERVL 58383 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 129.5-38 chr18 6025363 6025592 + 0.75 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -129523 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 179.25-36 chr5 121967722 121968198 + 0.75 NA intron (NM_152546, intron 1 of 7) intron (NM_152546, intron 1 of 7) 5985 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 162.75-61 chr5 129253486 129253818 + 0.75 NA Intergenic L1MA2|LINE|L1 143495 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 169.25-24 chr2 15228656 15228984 + 0.75 NA intron (NM_015909, intron 47 of 51) L1MA6|LINE|L1 332514 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 146-60 chr8 104079912 104080184 + 0.75 NA intron (NR_145711, intron 17 of 21) intron (NR_145711, intron 17 of 21) -143287 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 217.25-13 chr14 87325247 87325660 + 0.75 NA Intergenic Intergenic 329841 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 147-40 chr2 115297169 115297646 + 0.75 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -11830 NM_020868 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 219-31 chr6 93675689 93676105 + 0.75 NA Intergenic Intergenic -28120 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 114.75-5 chr1 242848315 242848555 + 0.75 NA Intergenic Intergenic 253309 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 127.75-21 chr12 43128182 43128380 + 0.75 NA Intergenic Intergenic -27034 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 179.5-54 chr2 51428001 51428349 + 0.75 NA intron (NR_135237, intron 4 of 10) MLT1C|LTR|ERVL-MaLR 395574 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 116.5-69 chr2 191674215 191674474 + 0.75 NA Intergenic Intergenic -3728 NM_001254736 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 123.75-25 chr12 9078586 9078848 + 0.75 NA intron (NM_000014, intron 25 of 35) intron (NM_000014, intron 25 of 35) 13540 NR_137424 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 179.75-2 chr1 56574983 56575426 + 0.75 NA intron (NM_003713, intron 1 of 5) MIRb|SINE|MIR 4359 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 149.5-2 chr1 17362497 17362732 + 0.75 NA intron (NM_012387, intron 15 of 15).2 L1PA17|LINE|L1 -9582 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 116.5-100 chr6 52189425 52189673 + 0.75 NA 3' UTR (NM_002190, exon 3 of 3) 3' UTR (NM_002190, exon 3 of 3) 3174 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 113.25-90 chr4 18644106 18644364 + 0.75 NA Intergenic Intergenic -622360 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 145.75-56 chr3 122511069 122511472 + 0.75 NA intron (NR_026698, intron 1 of 14) MamSINE1|SINE|tRNA-RTE 3669 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 156.75-83 chr6 159503364 159503734 + 0.75 NA Intergenic Intergenic 120018 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 160.5-24 chr15 62702457 62702906 + 0.75 NA intron (NM_015059, intron 15 of 55) intron (NM_015059, intron 15 of 55) 55370 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 178.5-98 chrX 142392321 142392725 + 0.75 NA Intergenic Intergenic -187233 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 157-4 chr1 57924322 57924600 + 0.75 NA intron (NM_021080, intron 1 of 16) AluSx1|SINE|Alu 63880 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 143.75-65 chr4 92987203 92987544 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 682974 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 183.75-45 chr5 118252012 118252368 + 0.75 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -30384 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 124-74 chr9 7097217 7097507 + 0.75 NA intron (NM_001353997, intron 17 of 22) intron (NM_001353997, intron 17 of 22) 340012 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 126.25-22 chr11 101902229 101902430 + 0.75 NA intron (NM_178127, intron 6 of 8) intron (NM_178127, intron 6 of 8) -12681 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 142.25-49 chr4 63507721 63507949 + 0.75 NA Intergenic L1PA8|LINE|L1 901615 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 169.75-50 chr5 104272781 104273166 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -710184 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 133.75-83 chrX 145147465 145147643 + 0.75 NA Intergenic Intergenic -99949 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 191.25-21 chr14 55978185 55978460 + 0.75 NA Intergenic Intergenic -140089 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 223-16 chr14 61632426 61633001 + 0.75 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -62060 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 115-75 chr8 80222786 80223088 + 0.75 NA Intergenic L1MEc|LINE|L1 -18452 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 135.5-46 chr19 4119869 4120079 + 0.75 NA intron (NM_030662, intron 1 of 10) intron (NM_030662, intron 1 of 10) 4155 NM_030662 5605 Hs.465627 NM_030662 ENSG00000126934 MAP2K2 CFC4|MAPKK2|MEK2|MKK2|PRKMK2 mitogen-activated protein kinase kinase 2 protein-coding 132.25-42 chr2 45618004 45618231 + 0.75 NA Intergenic Intergenic -6850 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 205.5-2 chr1 225305306 225305715 + 0.75 NA intron (NM_001367479, intron 58 of 85) LTR75|LTR|ERVL 122528 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 178.5-72 chr7 29332203 29332696 + 0.75 NA intron (NM_001293070, intron 2 of 13) Tigger5b|DNA|TcMar-Tigger -123479 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 179.75-8 chr10 130932842 130933172 + 0.75 NA Intergenic Intergenic 29661 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 152-42 chr3 84171965 84172188 + 0.75 NA Intergenic Intergenic 697499 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 206.5-41 chr5 27737836 27738238 + 0.75 NA Intergenic Intergenic 265745 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 147.75-91 chrX 39009539 39009857 + 0.75 NA Intergenic MER53|DNA|hAT -205815 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 144.75-22 chr12 24703957 24704302 + 0.75 NA Intergenic Intergenic -119961 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 236.5-18 chr16 20753212 20753719 + 0.75 NA Intergenic AluSx|SINE|Alu -10525 NM_202000 6296 Hs.706754 NM_005622 ENSG00000005187 ACSM3 SA|SAH acyl-CoA synthetase medium chain family member 3 protein-coding 119.5-84 chr3 174741110 174741380 + 0.75 NA Intergenic Intergenic -118089 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 176.25-29 chr17 58076805 58077137 + 0.75 NA TTS (NR_110809) TTS (NR_110809) 6233 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 116.25-72 chr5 57132493 57132834 + 0.75 NA Intergenic Intergenic -41285 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 169.5-21 chr12 129137942 129138324 + 0.75 NA intron (NM_133448, intron 5 of 8) MER102b|DNA|hAT-Charlie 28443 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 118-31 chr16 46389607 46389826 + 0.75 NA Intergenic Intergenic 179381 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 165.75-27 chr17 82612334 82612720 + 0.75 NA Intergenic L1M5|LINE|L1 35917 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 164.5-58 chr3 118454720 118455159 + 0.75 NA Intergenic L1PA11|LINE|L1 -186829 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 155.25-65 chr7 30229040 30229288 + 0.75 NA Intergenic L1PA16|LINE|L1 -55433 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 114.75-45 chr19 51446795 51447096 + 0.75 NA Intergenic Intergenic 11509 NM_014442 27181 Hs.447899 NM_014442 ENSG00000105366 SIGLEC8 SAF2|SIGLEC-8|SIGLEC8L sialic acid binding Ig like lectin 8 protein-coding 238-18 chr19 44117099 44117492 + 0.75 NA intron (NM_013362, intron 2 of 4) MIR|SINE|MIR 3896 NM_013362 7768 Hs.279567 NM_013362 ENSG00000256294 ZNF225 - zinc finger protein 225 protein-coding 122.75-37 chr18 72126793 72127092 + 0.75 NA Intergenic HSMAR1|DNA|TcMar-Mariner -344716 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 116.5-63 chr2 154977442 154977745 + 0.75 NA Intergenic Intergenic 278898 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 164-37 chr3 61321766 61322077 + 0.75 NA Intergenic L1M5|LINE|L1 -70460 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 201-11 chr12 16565105 16565608 + 0.75 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 40023 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 158.5-100 chr8 29374082 29374477 + 0.75 NA Intergenic Intergenic -23595 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 117.75-48 chr22 32900967 32901220 + 0.75 NA intron (NM_003490, intron 4 of 13) intron (NM_003490, intron 4 of 13) 100277 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 155.5-84 chr6 63319649 63320008 + 0.75 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 149 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 152.25-55 chr6 48640678 48640920 + 0.75 NA Intergenic Intergenic -572110 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 151.75-39 chr19 32501274 32501602 + 0.75 NA Intergenic L1MC4|LINE|L1 -79752 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 213-14 chr12 98178076 98178578 + 0.75 NA Intergenic Intergenic -182879 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 144.75-69 chr5 122535378 122535679 + 0.75 NA Intergenic Intergenic 49072 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 196.25-68 chr9 90163394 90163892 + 0.75 NA Intergenic L1ME1|LINE|L1 -122144 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 121.5-95 chr5 20294744 20295028 + 0.75 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -10665 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 187.5-19 chr13 78982025 78982459 + 0.75 NA Intergenic Intergenic -142192 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 145.5-72 chr4 158196292 158196556 + 0.75 NA intron (NR_147409, intron 2 of 2) MLT1K|LTR|ERVL-MaLR -14062 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 130.5-40 chr18 53236817 53237032 + 0.75 NA promoter-TSS (NR_130465) promoter-TSS (NR_130465) -177 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 215.75-15 chr22 30355280 30355683 + 0.75 NA intron (NM_005877, intron 1 of 15) L2|LINE|L2 -1143 NM_001318334 550631 Hs.505597 NM_001017437 ENSG00000187860 CCDC157 - coiled-coil domain containing 157 protein-coding 122-34 chr2 25714945 25715312 + 0.75 NA Intergenic L2|LINE|L2 -41454 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 160.75-12 chr10 115186427 115186743 + 0.75 NA intron (NM_207303, intron 8 of 28) L1MA3|LINE|L1 93220 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 137-2 chr1 41098434 41098720 + 0.75 NA intron (NM_001172222, intron 4 of 10) intron (NM_001172222, intron 4 of 10) 62855 NM_001031694 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 144.5-69 chr3 4409351 4409723 + 0.75 NA intron (NM_001164674, intron 6 of 7) intron (NM_001164674, intron 6 of 7) 57732 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 143-32 chr18 10955689 10955912 + 0.75 NA intron (NM_022068, intron 3 of 51) L2a|LINE|L2 192962 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 134.75-35 chr2 127346867 127347046 + 0.75 NA Intergenic AluSx1|SINE|Alu -3727 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 120-32 chr15 50610161 50610410 + 0.75 NA intron (NR_149154, intron 17 of 37) intron (NR_149154, intron 17 of 37) -63619 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 129.25-12 chr10 112403624 112403939 + 0.75 NA intron (NM_203379, intron 3 of 20) L1ME4c|LINE|L1 27583 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long chain family member 5 protein-coding 191.5-38 chr22 27178628 27179224 + 0.75 NA Intergenic L1ME3E|LINE|L1 -8590 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 194-10 chr12 9368943 9369298 + 0.75 NA non-coding (NR_120479, exon 1 of 4) non-coding (NR_120479, exon 1 of 4) 1656 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 127.5-23 chr11 67233941 67234274 + 0.75 NA intron (NR_027473, intron 12 of 20) intron (NR_027473, intron 12 of 20) -5907 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 190.75-18 chr14 33192971 33193341 + 0.75 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 254277 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 157.25-2 chr1 184170777 184171113 + 0.75 NA Intergenic Intergenic 119215 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 173.5-101 chr8 122987880 122988195 + 0.75 NA Intergenic AluSq|SINE|Alu 37735 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 137.75-13 chr11 23994827 23995175 + 0.75 NA Intergenic L1PREC2|LINE|L1 -502052 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 125.75-41 chr2 235100219 235100479 + 0.75 NA Intergenic Intergenic 72614 NM_001371306 203.25-23 chr16 78068796 78069157 + 0.75 NA Intergenic Tigger18a|DNA|TcMar-Tigger -30678 NR_120436 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 147-48 chr20 47140504 47140751 + 0.75 NA intron (NM_172110, intron 9 of 13) MIR|SINE|MIR -26340 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 201-16 chr13 97684017 97684325 + 0.75 NA Intergenic Intergenic 250002 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 161.25-66 chr5 124453661 124453963 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -15292 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 192-27 chr18 76789864 76790214 + 0.75 NA Intergenic Intergenic 32256 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 131-8 chr1 215489541 215489756 + 0.75 NA Intergenic FLAM_A|SINE|Alu -77656 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 160.75-62 chr7 78326469 78326845 + 0.75 NA intron (NM_001301128, intron 9 of 20) LTR78B|LTR|ERV1 -20585 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 166.75-23 chr17 60060144 60060392 + 0.75 NA intron (NM_022070, intron 9 of 19) intron (NM_022070, intron 9 of 19) -17163 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 209-20 chr22 43788083 43788402 + 0.75 NA intron (NM_022785, intron 2 of 31) L1MB7|LINE|L1 24063 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 146-24 chr2 10816980 10817186 + 0.75 NA intron (NM_001282704, intron 3 of 14) intron (NM_001282704, intron 3 of 14) -4244 NM_001282707 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 194.25-47 chr8 32660448 32660908 + 0.75 NA intron (NM_001322205, intron 1 of 8) MIR|SINE|MIR 13589 NM_001322207 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 144.75-67 chr4 150038916 150039242 + 0.75 NA Intergenic Intergenic -39366 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 143-62 chr6 18973041 18973385 + 0.75 NA Intergenic Intergenic 207267 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 122.5-90 chr7 105652927 105653213 + 0.75 NA intron (NM_001318229, intron 3 of 9) intron (NM_001318229, intron 3 of 9) 26085 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 146.5-13 chr10 123797644 123798000 + 0.75 NA intron (NM_198148, intron 6 of 13) AluJb|SINE|Alu 93985 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 148.25-30 chr18 12683385 12683643 + 0.75 NA intron (NM_001271989, intron 7 of 10) AluSq2|SINE|Alu 19209 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 118.75-57 chr2 156394952 156395315 + 0.75 NA Intergenic AluJb|SINE|Alu -40419 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 123.5-117 chr9 110176025 110176294 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 31974 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 195-57 chr7 44597136 44597598 + 0.75 NA Intergenic AluSx|SINE|Alu -9260 NM_001003941 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 141.75-81 chr7 26001514 26001771 + 0.75 NA Intergenic Intergenic -51656 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 188.5-23 chr18 79397926 79398369 + 0.75 NA intron (NM_172388, intron 1 of 8) CpG-12705 -2127 NM_001278673 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 132.5-45 chr18 7460739 7460965 + 0.75 NA intron (NM_001364581, intron 1 of 1) intron (NM_001364581, intron 1 of 1) 154 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 133-5 chr10 65263855 65264175 + 0.75 NA Intergenic Intergenic -307410 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 140-14 chr12 88560571 88560816 + 0.75 NA intron (NM_000899, intron 1 of 9) AluSx3|SINE|Alu 19778 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 149.5-88 chr5 122233029 122233330 + 0.75 NA Intergenic L1PA8|LINE|L1 73003 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 156-15 chr10 84212721 84212992 + 0.75 NA intron (NM_033100, intron 15 of 16) MIRb|SINE|MIR 12688 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 119.25-96 chr8 56988225 56988413 + 0.75 NA intron (NM_017813, intron 1 of 4) intron (NM_017813, intron 1 of 4) 5548 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 140.75-51 chr5 85771514 85771822 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB -510776 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 192.25-41 chr9 3688669 3689039 + 0.75 NA intron (NR_121586, intron 3 of 4) MLT1J-int|LTR|ERVL-MaLR 20768 NR_121586 101929302 Hs.122828 NR_121586 ENSG00000232104 RFX3-AS1 CVAT7 RFX3 antisense RNA 1 ncRNA 113.5-8 chr1 163038124 163038302 + 0.75 NA Intergenic Intergenic -30393 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 159.75-54 chr5 164898448 164898839 + 0.75 NA Intergenic L1MC3|LINE|L1 428364 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 171-4 chr1 50187437 50187749 + 0.75 NA intron (NM_001144774, intron 3 of 6) intron (NM_001144774, intron 3 of 6) 77760 NR_136725 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 148-29 chr16 73234384 73234593 + 0.75 NA Intergenic Intergenic -90041 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 139.75-29 chr14 79666599 79666890 + 0.75 NA intron (NM_004796, intron 14 of 16) intron (NM_004796, intron 14 of 16) 387364 NM_001105250 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 203-21 chr2 166112044 166112327 + 0.75 NA intron (NR_110260, intron 2 of 11) Tigger1|DNA|TcMar-Tigger 15835 NM_001353951 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 135-48 chr3 18487757 18487981 + 0.75 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -42277 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 192.75-51 chr9 136079463 136079756 + 0.75 NA intron (NM_144653, intron 1 of 5) intron (NM_144653, intron 1 of 5) 15680 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 166.75-41 chr20 52483354 52483799 + 0.75 NA Intergenic Intergenic -137262 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 116.75-52 chr3 177902711 177902923 + 0.75 NA Intergenic Intergenic 85952 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 145.25-54 chr3 193471378 193471660 + 0.75 NA intron (NM_032279, intron 8 of 29) AluJo|SINE|Alu -81694 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 119.75-65 chr4 105250025 105250229 + 0.75 NA intron (NM_001127208, intron 6 of 10) L1MB7|LINE|L1 102754 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 148.5-84 chr5 126391691 126391963 + 0.75 NA intron (NM_001146319, intron 1 of 13) L1MB7|LINE|L1 -31319 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 125.25-56 chr3 185913203 185913526 + 0.75 NA Intergenic Intergenic 24650 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 244.75-12 chr18 3797480 3798262 + 0.75 NA intron (NM_001242762, intron 2 of 9) THE1B|LTR|ERVL-MaLR 47487 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 115.25-88 chr7 43619940 43620260 + 0.75 NA intron (NM_004760, intron 4 of 6) intron (NM_004760, intron 4 of 6) 36992 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 205-22 chr2 67826823 67827300 + 0.75 NA Intergenic Intergenic -1499 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 135.75-78 chr5 116672548 116672793 + 0.75 NA Intergenic Intergenic 89539 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 150.5-19 chr12 60416347 60416691 + 0.75 NA Intergenic Intergenic 727149 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 150.5-71 chr5 59527710 59528020 + 0.75 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 58633 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 113-58 chr21 36301427 36301755 + 0.75 NA Intergenic LTR10C|LTR|ERV1 -18598 NM_001320446 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 217-4 chr1 159575361 159576016 + 0.75 NA Intergenic AluSc|SINE|Alu -12138 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 146.5-59 chr3 78116172 78116441 + 0.75 NA Intergenic Intergenic -67343 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 182.75-30 chr3 71990255 71990560 + 0.75 NA Intergenic Intergenic 110048 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 118.75 chr1 31905142 31905444 + 0.75 NA Intergenic AluJb|SINE|Alu 32525 NM_001369859 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 162.25-2 chr1 185938893 185939341 + 0.75 NA intron (NM_031935, intron 11 of 106) L1M6|LINE|L1 204726 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 162.5-10 chr10 24593576 24593905 + 0.75 NA intron (NM_001367447, intron 20 of 24) intron (NM_001367447, intron 20 of 24) 29103 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 150-81 chr8 128357802 128358144 + 0.75 NA Intergenic Intergenic 206706 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 170.5-20 chr11 114437074 114437534 + 0.75 NA Intergenic AluSg|SINE|Alu -2163 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 143.5-36 chr15 83797754 83797978 + 0.75 NA intron (NM_207517, intron 4 of 29) L1ME3Cz|LINE|L1 143743 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 180.5-4 chr1 216641621 216641907 + 0.75 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 81665 NM_001243515 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 204.25-6 chr10 58415168 58415566 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 29957 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 181-45 chr7 71579167 71579730 + 0.75 NA intron (NM_022479, intron 6 of 10) L2c|LINE|L2 -271678 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 216-15 chr15 83853375 83853889 + 0.75 NA intron (NM_207517, intron 7 of 29) L1M4|LINE|L1 199509 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 147.5-54 chr21 31039972 31040362 + 0.75 NA Intergenic Intergenic -1691 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 137.5-36 chr15 61504883 61505190 + 0.75 NA Intergenic Intergenic -224882 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 228.75-27 chr21 22033173 22033723 + 0.75 NA intron (NR_109959, intron 4 of 5) ERV3-16A3_I-int|LTR|ERVL 65011 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 218.75-23 chr3 28102928 28103429 + 0.75 NA Intergenic Intergenic -138441 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 165.25-54 chr7 150806425 150806921 + 0.75 NA Intergenic L1MEd|LINE|L1 -5313 NM_014020 28959 Hs.647090 NM_014020 ENSG00000106565 TMEM176B LR8|MS4B2 transmembrane protein 176B protein-coding 159.5-43 chr2 105933026 105933315 + 0.75 NA Intergenic L2a|LINE|L2 81323 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 137-46 chr3 45052437 45052736 + 0.75 NA Intergenic Intergenic 22443 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 188.5-24 chr19 10834496 10834966 + 0.75 NA intron (NM_006858, intron 3 of 3) AluSq2|SINE|Alu 1009 NR_104015 11018 Hs.211463 NM_006858 ENSG00000099203 TMED1 IL1RL1LG|Il1rl1l|Tp24|p24g1 transmembrane p24 trafficking protein 1 protein-coding 156-21 chr11 129731533 129731940 + 0.75 NA Intergenic Intergenic -84045 NM_001331211 120224 Hs.504301 NM_138788 ENSG00000151715 TMEM45B - transmembrane protein 45B protein-coding 158.75-50 chr4 93843322 93843775 + 0.75 NA Intergenic Intergenic 14795 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 190-9 chr12 11890998 11891493 + 0.75 NA 3' UTR (NM_001987, exon 8 of 8) 3' UTR (NM_001987, exon 8 of 8) -158616 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 128-17 chr15 74650907 74651152 + 0.75 NA intron (NM_001142443, intron 7 of 9) intron (NM_001142443, intron 7 of 9) 36035 NM_001130028 1198 Hs.511790 NM_001292 ENSG00000179335 CLK3 PHCLK3|PHCLK3/152 CDC like kinase 3 protein-coding 122-33 chr2 17874418 17874580 + 0.75 NA Intergenic Intergenic -3348 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 113.75-30 chr12 111475410 111475720 + 0.75 NA intron (NR_132311, intron 17 of 23) AluSg4|SINE|Alu 40703 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 172-21 chr2 26702741 26703115 + 0.75 NA intron (NM_002246, intron 1 of 1) AluSx1|SINE|Alu 10206 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 122.75-56 chr3 166725561 166725769 + 0.75 NA Intergenic MER4D1|LTR|ERV1 -173018 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 141.75-37 chr19 49998170 49998512 + 0.75 NA intron (NM_016440, intron 6 of 14) AluSz|SINE|Alu 27031 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 150.75-2 chr1 189680329 189680620 + 0.75 NA Intergenic Intergenic 795536 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 165.5-69 chr5 3313526 3313858 + 0.75 NA Intergenic MIRc|SINE|MIR 135857 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 164-27 chr2 46481260 46481682 + 0.75 NA intron (NM_001145051, intron 2 of 2) intron (NM_001145051, intron 2 of 2) 1906 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 192.5-29 chr2 109452057 109452447 + 0.75 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) -138627 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 184-41 chr5 1745861 1746298 + 0.75 NA Intergenic Intergenic -37211 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 123.75-18 chr10 93097676 93097879 + 0.75 NA Intergenic Intergenic 23884 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 118.25-40 chr17 53366541 53366708 + 0.75 NA Intergenic MER4E|LTR|ERV1 381119 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 163.25-43 chr22 29906090 29906524 + 0.75 NA intron (NM_153051, intron 1 of 18) (TCTA)n|Simple_repeat|Simple_repeat 23133 NM_021090 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 123.25-8 chr10 29980513 29980850 + 0.75 NA Intergenic LTR82A|LTR|ERVL 78905 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 113.75-54 chr2 69331910 69332206 + 0.75 NA intron (NM_002056, intron 14 of 18) (TTTTCCT)n|Simple_repeat|Simple_repeat 55169 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 151-40 chr21 21536760 21537000 + 0.75 NA intron (NM_001352591, intron 17 of 17) intron (NM_001352591, intron 17 of 17) 200439 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 126.75-8 chr1 203250536 203250770 + 0.75 NA Intergenic L1MC3|LINE|L1 -20980 NM_001256125 1118 Hs.201688 NM_003465 ENSG00000133063 CHIT1 CHI3|CHIT|CHITD chitinase 1 protein-coding 175-42 chr3 195231562 195231833 + 0.75 NA intron (NM_152531, intron 1 of 3) L1MA3|LINE|L1 16223 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 136.25-54 chr3 97673507 97673728 + 0.75 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -90904 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 155.5-25 chr11 129319233 129319626 + 0.75 NA Intergenic Intergenic -36265 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 113.25-81 chr22 28398783 28399087 + 0.75 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -60934 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 193.25-15 chr18 59570564 59570907 + 0.75 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 126688 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 122-8 chr1 212992239 212992538 + 0.75 NA TTS (NM_024749) TTS (NM_024749) 23121 NM_001300755 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 189-40 chr5 66489482 66489839 + 0.75 NA Intergenic LTR1E|LTR|ERV1 21944 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 120.75-36 chr16 79932745 79932916 + 0.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 137581 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 133-50 chr4 33675359 33675761 + 0.75 NA Intergenic L1ME2|LINE|L1 364333 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 126.75-37 chr18 6385220 6385554 + 0.75 NA intron (NM_001365765, intron 1 of 18) AluJo|SINE|Alu -10962 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 128-35 chr3 21071814 21072111 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -333764 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 141.5-98 chr6 43946581 43946861 + 0.75 NA Intergenic L1ME5|LINE|L1 -53864 NR_160954 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 141.75-85 chr8 137481740 137481957 + 0.75 NA Intergenic L2|LINE|L2 -68260 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 118.5-106 chr7 77916451 77916802 + 0.75 NA intron (NM_001366085, intron 7 of 10) MER2|DNA|TcMar-Tigger 76496 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 152.75-12 chr12 118274642 118274943 + 0.75 NA intron (NM_001346490, intron 1 of 21) AluSx3|SINE|Alu -84257 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 166.5-7 chr1 62712506 62712767 + 0.75 NA Intergenic Intergenic -24250 NM_001272002 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 185.75-58 chr8 99107666 99108072 + 0.75 NA intron (NR_047582, intron 6 of 8) L1PA15|LINE|L1 94603 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 112.75-85 chr8 108173959 108174241 + 0.75 NA Intergenic L1ME1|LINE|L1 74617 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 258.5-20 chr8 88714506 88714945 + 0.75 NA Intergenic MER34A|LTR|ERV1 -387242 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 139.25-19 chr12 37847947 37848200 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -468701 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 114.25-37 chr16 86859287 86859590 + 0.75 NA Intergenic Intergenic 137347 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 159-3 chr1 114523765 114524044 + 0.75 NA Intergenic FLAM_C|SINE|Alu -12701 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 121.75-33 chr17 75522721 75522964 + 0.75 NA intron (NM_207346, intron 8 of 10) MER53|DNA|hAT -2855 NM_004524 3993 Hs.514477 NM_004524 ENSG00000073350 LLGL2 HGL|Hugl-2|LGL2 LLGL scribble cell polarity complex component 2 protein-coding 121.5-48 chr17 59694355 59694569 + 0.75 NA 3' UTR (NM_004859, exon 32 of 32) 3' UTR (NM_004859, exon 32 of 32) 13136 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 172.75-38 chr7 46477998 46478273 + 0.75 NA Intergenic MIRb|SINE|MIR 218987 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 183-48 chr4 36087064 36087438 + 0.75 NA intron (NR_146894, intron 28 of 32) intron (NR_146894, intron 28 of 32) 156688 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 135.25-86 chr6 113307376 113307712 + 0.75 NA Intergenic Intergenic 125903 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 123-16 chr13 47656875 47657193 + 0.75 NA Intergenic L1PA17|LINE|L1 275588 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 142-22 chr16 1360382 1360597 + 0.75 NA intron (NM_032520, intron 3 of 10) AluSx1|SINE|Alu 8558 NM_032520 84572 Hs.241575 NM_032520 ENSG00000090581 GNPTG C16orf27|GNPTAG|LP2537|RJD9 N-acetylglucosamine-1-phosphate transferase subunit gamma protein-coding 228.75-17 chr17 6073635 6074067 + 0.75 NA intron (NM_015253, intron 1 of 8) intron (NM_015253, intron 1 of 8) 3237 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 140.5-2 chr1 50866801 50867114 + 0.75 NA intron (NM_007051, intron 1 of 18) L1PB1|LINE|L1 93310 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 155.25-44 chr3 57841768 57841992 + 0.75 NA intron (NM_001304420, intron 3 of 21) intron (NM_001304420, intron 3 of 21) -48034 NM_001311178 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 218-20 chr2 57449076 57449394 + 0.75 NA Intergenic Intergenic -458416 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 118-2 chr1 95641734 95641903 + 0.75 NA Intergenic Intergenic 131702 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 125-60 chr3 53436360 53436649 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie -58107 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 124.75-31 chr16 12105397 12105606 + 0.75 NA intron (NM_032167, intron 11 of 20) AluSx3|SINE|Alu 128767 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 230-5 chr14 48463991 48464559 + 0.75 NA Intergenic L1ME3G|LINE|L1 -669261 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 142-54 chr5 46300116 46300339 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -603847 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 138.5-16 chr10 121439380 121439717 + 0.75 NA Intergenic Intergenic 91766 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 161-11 chr10 120300616 120301080 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 54375 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 200.25-3 chr1 94746661 94746983 + 0.75 NA promoter-TSS (NR_039620) promoter-TSS (NR_039620) -922 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 132-83 chr9 92843737 92843975 + 0.75 NA TTS (NM_031486) TTS (NM_031486) 34112 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 146.5-57 chr3 5436105 5436530 + 0.75 NA Intergenic Intergenic -186062 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 127.5-13 chr1 222414790 222415021 + 0.75 NA Intergenic L3|LINE|CR1 133199 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 157.25-13 chr11 40408504 40408730 + 0.75 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -115487 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 122.5-17 chr11 95504211 95504503 + 0.75 NA Intergenic L2|LINE|L2 -271882 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 164-26 chr2 10298432 10298828 + 0.75 NA Intergenic MIRb|SINE|MIR -4274 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 150.25-39 chr2 122840909 122841314 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 232370 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 213.75-13 chr10 116025541 116025873 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie 169082 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 154.25-60 chr7 41334082 41334464 + 0.75 NA Intergenic Intergenic 232669 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 153.75-63 chr5 26316652 26317032 + 0.75 NA Intergenic L1PB3|LINE|L1 721744 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 136.5-19 chr11 84904993 84905327 + 0.75 NA intron (NM_001351274, intron 5 of 26) AluJb|SINE|Alu 18261 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 157.75-77 chr8 111008712 111008991 + 0.75 NA intron (NR_125416, intron 1 of 4) intron (NR_125416, intron 1 of 4) 18582 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 121-33 chr2 4892599 4892788 + 0.75 NA Intergenic AluSc|SINE|Alu -236471 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 117.5-83 chr6 82033208 82033426 + 0.75 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) 68448 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 193.25-49 chr9 27199154 27199463 + 0.75 NA intron (NM_001290077, intron 11 of 21) L1ME3Cz|LINE|L1 83485 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 113.25-57 chr18 22627296 22627558 + 0.75 NA Intergenic L1ME1|LINE|L1 159410 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 171.25-22 chr17 66229034 66229265 + 0.75 NA intron (NM_000042, intron 1 of 7) AluSx|SINE|Alu 266 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 143.75-58 chr21 42314770 42315188 + 0.75 NA intron (NM_003226, intron 1 of 2) intron (NM_003226, intron 1 of 2) 617 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 148.75-71 chr8 112146088 112146353 + 0.75 NA Intergenic HAL1|LINE|L1 -497273 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 153.5-10 chr10 43844611 43844959 + 0.75 NA promoter-TSS (NR_033923) promoter-TSS (NR_033923) -521 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 136.5-85 chr4 134689137 134689352 + 0.75 NA Intergenic Intergenic 265376 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 202 chr1 97960816 97961160 + 0.75 NA Intergenic L1ME3A|LINE|L1 -19248 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 137.25-10 chr10 77694272 77694481 + 0.75 NA Intergenic Intergenic -56568 NM_001271521 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 160-9 chr12 128037863 128038188 + 0.75 NA Intergenic Intergenic -10859 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 115.75-65 chr3 192498673 192498919 + 0.75 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -16226 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 265.25-28 chr9 109902178 109902646 + 0.75 NA intron (NM_053016, intron 3 of 6) intron (NM_053016, intron 3 of 6) 122214 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 141-3 chr1 75624972 75625197 + 0.75 NA Intergenic Intergenic -8921 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 278-2 chr10 48856294 48856766 + 0.75 NA intron (NM_020945, intron 39 of 61) L1PA7|LINE|L1 57705 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 117-62 chr4 80231631 80231832 + 0.75 NA Intergenic Intergenic 34228 NM_001099403 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 144.5-64 chr20 47139675 47139895 + 0.75 NA intron (NM_172110, intron 9 of 13) HAL1|LINE|L1 -27182 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 172.25-22 chr14 83228021 83228282 + 0.75 NA Intergenic Intergenic 585519 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 124.75-80 chr7 28428879 28429189 + 0.75 NA intron (NM_182898, intron 1 of 10) intron (NM_182898, intron 1 of 10) -6581 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 164.75-26 chr15 96437189 96437686 + 0.75 NA Intergenic L1PB2|LINE|L1 103672 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 154-56 chr6 34818609 34818940 + 0.75 NA intron (NM_017754, intron 1 of 20) L1ME3Cz|LINE|L1 26691 NM_017754 54887 Hs.700656 NM_017754 ENSG00000065060 UHRF1BP1 C6orf107|ICBP90|dJ349A12.1 UHRF1 binding protein 1 protein-coding 140-29 chr2 28179122 28179481 + 0.75 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 27660 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 126.25 chr1 6044642 6044916 + 0.75 NA intron (NM_001199861, intron 3 of 15) intron (NM_001199861, intron 3 of 15) -1109 NM_001199862 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 154.75-5 chr10 97711813 97712044 + 0.75 NA Intergenic Intergenic -1802 NM_031484 83742 Hs.744073 NM_031484 ENSG00000155254 MARVELD1 GB14|MARVD1|MRVLDC1|bA548K23.8 MARVEL domain containing 1 protein-coding 158.25-17 chr14 98157559 98157986 + 0.75 NA Intergenic Intergenic -179648 NR_152746 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 155.5-66 chr21 24505284 24505600 + 0.75 NA intron (NR_135519, intron 1 of 2) L1MEf|LINE|L1 76702 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 227.5-10 chr10 110271359 110271816 + 0.75 NA intron (NM_005962, intron 3 of 5) L2b|LINE|L2 33333 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 230-15 chr2 198991870 198992359 + 0.75 NA Intergenic Intergenic 465825 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 130-59 chr4 97153318 97153573 + 0.75 NA Intergenic Intergenic -213481 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 146.25-18 chr11 111250435 111250704 + 0.75 NA intron (NM_198498, intron 1 of 4) L2a|LINE|L2 4844 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 154.5-69 chr7 62714304 62714544 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 589632 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 128.25-88 chr9 17191603 17191882 + 0.75 NA intron (NM_001365029, intron 2 of 25) intron (NM_001365029, intron 2 of 25) 56702 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 194.5-48 chr3 83423177 83423698 + 0.75 NA Intergenic MER34-int|LTR|ERV1 1437295 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 164-13 chr12 12308794 12309116 + 0.75 NA Intergenic Intergenic 41287 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 129.5-30 chr14 70878818 70879006 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 -28547 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 116-72 chr8 105173329 105173508 + 0.75 NA Intergenic Intergenic -145020 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 126-76 chr7 6177800 6178037 + 0.75 NA exon (NM_004227, exon 5 of 13) exon (NM_004227, exon 5 of 13) -5781 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 167.25-25 chr14 52722670 52723026 + 0.75 NA intron (NM_002806, intron 12 of 13) MER58A|DNA|hAT-Charlie -7318 NM_145251 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 140.25-92 chr8 111089354 111089636 + 0.75 NA Intergenic L1M3a|LINE|L1 -62062 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 124.75-74 chr6 39078905 39079189 + 0.75 NA intron (NR_136563, intron 9 of 13) intron (NR_136563, intron 9 of 13) 4733 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 169-39 chr3 108031657 108031916 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR 59302 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 188.75-6 chr12 21820641 21821211 + 0.75 NA intron (NM_005691, intron 29 of 37) L2a|LINE|L2 -46220 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 169-38 chr3 104794627 104794935 + 0.75 NA Intergenic Intergenic -571932 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 156.25-50 chr3 40823857 40824327 + 0.75 NA Intergenic L1ME4a|LINE|L1 299132 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 142.25-73 chr9 126774993 126775182 + 0.75 NA Intergenic L1M5|LINE|L1 -29919 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 209.5-27 chr3 50297369 50297762 + 0.75 NA 5' UTR (NM_001200016, exon 2 of 2) 5' UTR (NM_001200016, exon 2 of 2) 1295 NM_001200018 24142 Hs.129910 NM_012191 ENSG00000243477 NAA80 FUS-2|FUS2|HsNAAA80|NAT6 N(alpha)-acetyltransferase 80, NatH catalytic subunit protein-coding 144.75-19 chr11 77476168 77476553 + 0.75 NA Intergenic MIR|SINE|MIR -2297 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 158-71 chr9 112665102 112665483 + 0.75 NA TTS (NM_001287036) TTS (NM_001287036) 52825 NM_001329587 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 119.5-72 chr22 28141454 28141642 + 0.75 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -220936 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 131-71 chr7 48898814 48899121 + 0.75 NA Intergenic Intergenic -25580 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 144.25-53 chr3 194830151 194830495 + 0.75 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat -61614 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 198-7 chr10 83324087 83324600 + 0.75 NA Intergenic L1MA2|LINE|L1 352746 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 140.5-49 chr2 144877021 144877296 + 0.75 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 209191 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 126.75-94 chr8 95587646 95587882 + 0.75 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -318563 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 207.25-24 chr5 24222056 24222368 + 0.75 NA Intergenic L1PBb|LINE|L1 270864 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 150.25-79 chr8 134607570 134607920 + 0.75 NA intron (NM_020863, intron 5 of 15) intron (NM_020863, intron 5 of 15) 9674 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 149.75-15 chr14 32182446 32182776 + 0.75 NA Intergenic L1MEd|LINE|L1 -19434 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 134.5-61 chr3 102913449 102913685 + 0.75 NA Intergenic Intergenic 478552 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 218.25-34 chr4 81444926 81445258 + 0.75 NA intron (NM_152545, intron 8 of 13) intron (NM_152545, intron 8 of 13) 26815 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 168.75-36 chr3 96211420 96211785 + 0.75 NA Intergenic L1PA7|LINE|L1 -148362 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 114.5 chr1 16315081 16315295 + 0.75 NA exon (NM_018994, exon 2 of 10) exon (NM_018994, exon 2 of 10) 37292 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 144.25-2 chr1 50548476 50548776 + 0.75 NA intron (NM_007051, intron 13 of 18) intron (NM_007051, intron 13 of 18) -125183 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 162-8 chr11 78285620 78285854 + 0.75 NA intron (NM_080491, intron 1 of 9) AluSz|SINE|Alu 56143 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 168.5-37 chr18 6991928 6992191 + 0.75 NA intron (NM_005559, intron 36 of 62) intron (NM_005559, intron 36 of 62) 37382 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 208.5-47 chr21 32236083 32236522 + 0.75 NA Intergenic AluY|SINE|Alu 42747 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 174.25-3 chr1 45084101 45084426 + 0.75 NA intron (NM_020883, intron 2 of 13) MSTA|LTR|ERVL-MaLR 72009 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 123.5-69 chr3 133772146 133772425 + 0.75 NA intron (NM_001063, intron 14 of 16) intron (NM_001063, intron 14 of 16) -11738 NM_021203 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 124.25-70 chr5 94644753 94645031 + 0.75 NA intron (NM_032290, intron 5 of 20) L2b|LINE|L2 26223 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 246.25-29 chr7 124268372 124268767 + 0.75 NA Intergenic L1ME1|LINE|L1 83527 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 114.25-56 chr2 79770145 79770429 + 0.75 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 96296 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 185.5-35 chr17 65261584 65262019 + 0.75 NA Intergenic L1ME4a|LINE|L1 124431 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 172-50 chr9 11323081 11323325 + 0.75 NA Intergenic Intergenic 709997 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 234.75-10 chr11 82357951 82358454 + 0.75 NA intron (NR_120571, intron 1 of 7) intron (NR_120571, intron 1 of 7) 45711 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 138-30 chr18 11391077 11391382 + 0.75 NA Intergenic Intergenic -63249 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 157.25-5 chr1 224287099 224287534 + 0.75 NA intron (NM_002533, intron 14 of 22) L1MA4|LINE|L1 -30206 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 161.5-82 chr8 31774808 31775146 + 0.75 NA intron (NM_013962, intron 1 of 4) L1PB4|LINE|L1 135225 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 143.75-39 chr15 97231599 97231961 + 0.75 NA Intergenic Intergenic 290031 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 177.5-48 chr3 73938018 73938376 + 0.75 NA Intergenic L1MCc|LINE|L1 128953 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 135.5-23 chr12 15694337 15694556 + 0.75 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 94942 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 117.5-79 chr6 11679578 11679919 + 0.75 NA Intergenic Intergenic 99299 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 140-42 chr3 39941570 39941858 + 0.75 NA intron (NM_001284424, intron 2 of 15) L1ME4a|LINE|L1 132054 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 209-29 chr6 74291230 74291731 + 0.75 NA intron (NR_110856, intron 1 of 3) L1MA2|LINE|L1 222029 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 137.25-52 chr3 11037947 11038300 + 0.75 NA 3' UTR (NM_001348250, exon 16 of 16) 3' UTR (NM_001348250, exon 16 of 16) -18899 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 179-54 chr6 136996884 136997187 + 0.75 NA Intergenic Intergenic -3804 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 139-39 chr20 2077058 2077273 + 0.75 NA Intergenic L1MC1|LINE|L1 -24662 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 253.75-11 chr2 34777330 34777760 + 0.75 NA Intergenic Intergenic 99988 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 113.25-49 chr16 57238900 57239102 + 0.75 NA 3' UTR (NM_001305163, exon 15 of 15) 3' UTR (NM_001305163, exon 15 of 15) -6258 NM_012106 23568 Hs.632873 NM_012106 ENSG00000102931 ARL2BP BART|BART1|RP66 ADP ribosylation factor like GTPase 2 binding protein protein-coding 239.75-3 chr1 177556706 177557073 + 0.75 NA Intergenic MSTC|LTR|ERVL-MaLR -143635 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 144.25-14 chr11 16055452 16055804 + 0.75 NA intron (NM_033326, intron 10 of 15) intron (NM_033326, intron 10 of 15) -86007 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 124.25-23 chr12 41940933 41941213 + 0.75 NA Intergenic L2c|LINE|L2 176884 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 168.25-40 chr3 61067911 61068289 + 0.75 NA intron (NR_148922, intron 2 of 3) MER5A|DNA|hAT-Charlie 183352 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 150.25-26 chr14 66172293 66172578 + 0.75 NA Intergenic Intergenic -313936 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 181.5-71 chr8 28855538 28855858 + 0.75 NA intron (NR_026826, intron 1 of 14) L1MC4|LINE|L1 34217 NM_001172562 55756 Hs.162397 NM_018250 ENSG00000104299 INTS9 CPSF2L|INT9|RC74 integrator complex subunit 9 protein-coding 174.25-45 chr5 10645209 10645646 + 0.75 NA intron (NM_001164440, intron 3 of 3) intron (NM_001164440, intron 3 of 3) 81357 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 120.75-88 chr6 108418942 108419115 + 0.75 NA intron (NM_145315, intron 7 of 12) intron (NM_145315, intron 7 of 12) 123974 NM_001323005 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 184-14 chr14 60084910 60085510 + 0.75 NA Intergenic Intergenic -6701 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 142-66 chr7 135049280 135049560 + 0.75 NA intron (NM_001345850, intron 6 of 11) L1MB1|LINE|L1 62912 NM_178563 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 155-62 chr8 121789750 121790011 + 0.75 NA Intergenic AluSp|SINE|Alu -148440 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 130.25-50 chr2 194148949 194149179 + 0.75 NA Intergenic LTR77|LTR|ERV1 -195205 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 153.75-25 chr14 61539003 61539247 + 0.75 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 31069 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 130.75-23 chr14 57254033 57254269 + 0.75 NA intron (NM_006544, intron 1 of 17) L1M4c|LINE|L1 14754 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 113.75-29 chr12 47340060 47340410 + 0.75 NA Intergenic MIR|SINE|MIR 24034 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 149.5-22 chr12 22033237 22033468 + 0.75 NA Intergenic Intergenic -12822 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 184.25-11 chr12 127265399 127265852 + 0.75 NA Intergenic MER30|DNA|hAT-Charlie 18658 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 160.75-23 chr15 83554698 83555081 + 0.75 NA intron (NM_001324186, intron 2 of 9) L1MEi|LINE|L1 64275 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 127.25-72 chr4 108315864 108316219 + 0.75 NA Intergenic Intergenic 143921 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 149.75-40 chr3 68251067 68251335 + 0.75 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 246954 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 115.75-50 chr20 35570942 35571157 + 0.75 NA intron (NR_119376, intron 35 of 42) AluSz6|SINE|Alu 28971 NM_198398 51614 Hs.472558 NM_015966 ENSG00000125991 ERGIC3 C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 ERGIC and golgi 3 protein-coding 149.5-51 chr2 18479576 18479941 + 0.75 NA Intergenic Intergenic 80895 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 140-44 chr3 110030976 110031380 + 0.75 NA Intergenic Intergenic 428350 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 122.25-17 chr11 74455990 74456307 + 0.75 NA 3' UTR (NM_005472, exon 3 of 3) 3' UTR (NM_005472, exon 3 of 3) 11407 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 114.75-28 chr14 41594809 41595195 + 0.75 NA Intergenic Intergenic -11854 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 188.75-10 chr14 67550389 67550722 + 0.75 NA intron (NM_020715, intron 2 of 28) intron (NM_020715, intron 2 of 28) -16705 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 188.75-11 chr14 100662843 100663232 + 0.75 NA intron (NR_024096, intron 1 of 1) intron (NR_024096, intron 1 of 1) 5769 NR_024096 283601 Hs.379802 NM_001007560 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 136.5-90 chr5 64271984 64272287 + 0.75 NA intron (NM_001113561, intron 5 of 7) L2c|LINE|L2 106292 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 131.75-73 chr7 2274347 2274674 + 0.75 NA intron (NM_013321, intron 3 of 10) intron (NM_013321, intron 3 of 10) -16933 NR_106895 102465503 NR_106895 ENSG00000284047 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 114.75-98 chr7 46620020 46620290 + 0.75 NA Intergenic LTR65|LTR|ERV1 76967 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 152-74 chr9 126053517 126053826 + 0.75 NA Intergenic Intergenic 222244 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 124-54 chr5 12930801 12931096 + 0.75 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 101938 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 125.75-14 chr11 78584110 78584339 + 0.75 NA Intergenic L1MEg|LINE|L1 -9360 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 142.5-99 chr8 132606773 132607030 + 0.75 NA intron (NR_135913, intron 9 of 10) Tigger3|DNA|TcMar-Tigger -45422 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 123.25-49 chr20 59465043 59465411 + 0.75 NA Intergenic Intergenic -112282 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 135-74 chr8 82982681 82982996 + 0.75 NA Intergenic L1MC4a|LINE|L1 70734 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 120-26 chr14 48838513 48838805 + 0.75 NA Intergenic Intergenic 747721 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 151.25-36 chr21 33941874 33942129 + 0.75 NA intron (NR_038883, intron 1 of 2) L1ME4a|LINE|L1 10787 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 161-56 chr5 142010822 142011111 + 0.75 NA intron (NM_005471, intron 2 of 6) AluJb|SINE|Alu 2061 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 126.5-73 chr3 112946796 112947055 + 0.75 NA intron (NM_138940, intron 1 of 2) L1MC1|LINE|L1 28178 NM_138806 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 127.5-30 chr13 76817026 76817343 + 0.75 NA Intergenic Intergenic 69221 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 128.25-14 chr10 86423615 86423840 + 0.75 NA Intergenic LTR26C|LTR|ERV1 -56932 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 142.75-60 chr4 32002960 32003378 + 0.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) 5790 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 160.5-44 chr22 26917581 26917885 + 0.75 NA intron (NR_110540, intron 2 of 2) MIR|SINE|MIR 14441 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 127-16 chr11 90464635 90464982 + 0.75 NA intron (NR_104190, intron 1 of 6) L1MA2|LINE|L1 91049 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 117.75-29 chr16 26133900 26134121 + 0.75 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 108773 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 158.5-34 chr14 71732737 71733087 + 0.75 NA intron (NM_001354286, intron 21 of 24) intron (NM_001354286, intron 21 of 24) 146614 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 146.25 chr1 34766645 34766933 + 0.75 NA Intergenic L2a|LINE|L2 7049 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV|EKVP2 gap junction protein beta 4 protein-coding 148-22 chr14 66237062 66237361 + 0.75 NA Intergenic Intergenic -249160 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 177.5-23 chr17 16316990 16317297 + 0.75 NA intron (NM_004278, intron 5 of 6) intron (NM_004278, intron 5 of 6) 35129 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 132.75-79 chr5 142938488 142938806 + 0.75 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -69737 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 139.5-87 chr5 177265101 177265345 + 0.75 NA intron (NM_172349, intron 15 of 23) intron (NM_172349, intron 15 of 23) 38496 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 122-21 chr14 20836684 20836925 + 0.75 NA Intergenic Intergenic -33960 NM_198235 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 185.25-45 chr5 141831790 141832121 + 0.75 NA Intergenic Intergenic 34247 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 113-95 chr7 66071206 66071407 + 0.75 NA Intergenic Intergenic -4513 NM_000048 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 139.75-35 chr17 48169038 48169287 + 0.75 NA intron (NM_003726, intron 10 of 12) intron (NM_003726, intron 10 of 12) -12651 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 155.75-40 chr3 183349502 183349765 + 0.75 NA intron (NM_015078, intron 3 of 29) MIRb|SINE|MIR 78636 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 166.5-29 chr14 20074835 20075329 + 0.75 NA Intergenic L1MA8|LINE|L1 15037 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 134.75-14 chr11 112656658 112656909 + 0.75 NA Intergenic L2c|LINE|L2 -100981 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 160 chr1 71112508 71112829 + 0.75 NA intron (NR_046217, intron 2 of 3) Charlie2b|DNA|hAT-Charlie 31344 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 128-51 chr5 21766339 21766586 + 0.75 NA intron (NM_004061, intron 11 of 14) MIR|SINE|MIR -117992 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 113.5-89 chr4 76673137 76673322 + 0.75 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 97678 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 125.75-34 chr2 46893495 46893751 + 0.75 NA Intergenic L1MD1|LINE|L1 22183 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 174.25-22 chr13 22070961 22071262 + 0.75 NA Intergenic Intergenic -139174 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 130.5-96 chr8 78087246 78087472 + 0.75 NA Intergenic Intergenic -428981 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 140.5-63 chr3 45642564 45642851 + 0.75 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 46175 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 121.75-10 chr10 132972638 132972902 + 0.75 NA non-coding (NR_046231, exon 2 of 3) non-coding (NR_046231, exon 2 of 3) 7236 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 138.75-46 chr3 24624622 24624929 + 0.75 NA Intergenic Intergenic -129067 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 201.25-18 chr2 156493111 156493494 + 0.75 NA intron (NM_000408, intron 2 of 16) intron (NM_000408, intron 2 of 16) 56923 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 167-70 chr9 34415374 34415776 + 0.75 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) -17765 NM_032596 84688 Hs.50334 NM_032596 ENSG00000164972 C9orf24 CBE1|NYD-SP22|SMRP1|bA573M23.4 chromosome 9 open reading frame 24 protein-coding 150-66 chr6 48143465 48143891 + 0.75 NA Intergenic HAL1ME|LINE|L1 -74989 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 126-88 chr8 91365611 91365842 + 0.75 NA intron (NM_134266, intron 13 of 18) MIRc|SINE|MIR 116407 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 204.5-24 chr18 26884204 26884645 + 0.75 NA intron (NR_026908, intron 1 of 7) SATR1|Satellite|Satellite -18621 NM_001317387 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 122.75-72 chr6 62571431 62571657 + 0.75 NA Intergenic Intergenic -285317 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 193.5-69 chr6 127134400 127134932 + 0.75 NA intron (NM_032784, intron 1 of 4) intron (NM_032784, intron 1 of 4) 15995 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 134.25-42 chr2 202540933 202541184 + 0.75 NA intron (NM_001204, intron 9 of 12) intron (NM_001204, intron 9 of 12) -93911 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 172.25-48 chr3 86249870 86250325 + 0.75 NA Intergenic Intergenic -231846 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 158-68 chr8 133206574 133206981 + 0.75 NA intron (NM_001204870, intron 1 of 1) intron (NM_001204870, intron 1 of 1) 15738 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 157.75-44 chr2 211638179 211638612 + 0.75 NA intron (NM_001042599, intron 16 of 26) intron (NM_001042599, intron 16 of 26) 787965 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 216.25-7 chr10 72921876 72922434 + 0.75 NA intron (NR_130125, intron 6 of 7) L1PA12|LINE|L1 28416 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 136.75-23 chr12 128580559 128580910 + 0.75 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 243224 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 177.25-24 chr2 90066468 90066777 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -428715 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 112.75-63 chr3 94779937 94780160 + 0.75 NA Intergenic UCON12|Unknown|Unknown -158215 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 157.5-19 chr12 119222687 119223160 + 0.75 NA Intergenic AluJo|SINE|Alu 44133 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 123.25-33 chr17 30354984 30355249 + 0.75 NA Intergenic Intergenic -21059 NM_206832 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 202-28 chr8 87948869 87949288 + 0.75 NA Intergenic Intergenic -75063 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 195.5-55 chr22 44125482 44125961 + 0.75 NA intron (NM_001243386, intron 4 of 11) L2a|LINE|L2 -47235 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 151.5-36 chr2 54696303 54696643 + 0.75 NA Intergenic L1MA3|LINE|L1 -28539 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 164.75-50 chr4 37280172 37280576 + 0.75 NA intron (NM_001144990, intron 1 of 6) MER6A|DNA|TcMar-Tigger 35631 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 201 chr1 97251645 97252044 + 0.75 NA intron (NM_000110, intron 18 of 22) intron (NM_000110, intron 18 of 22) 155921 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 123.25-27 chr15 71011128 71011335 + 0.75 NA intron (NM_017691, intron 13 of 15) intron (NM_017691, intron 13 of 15) 118788 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 144-20 chr12 66006102 66006415 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger 17468 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 175-32 chr20 8162561 8162923 + 0.75 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 30476 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 127.75-5 chr1 162721460 162721754 + 0.75 NA intron (NM_006182, intron 3 of 17) intron (NM_006182, intron 3 of 17) -69095 NM_001304512 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 143.75-17 chr10 104124216 104124526 + 0.75 NA intron (NM_001002759, intron 3 of 3) Tigger15a|DNA|TcMar-Tigger 2200 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 214-25 chr2 64416431 64416869 + 0.75 NA Intergenic Intergenic -37512 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 142.75 chr1 67051978 67052216 + 0.75 NA intron (NM_015139, intron 3 of 11) intron (NM_015139, intron 3 of 11) 2051 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 116-35 chr19 33935405 33935657 + 0.75 NA Intergenic Intergenic 138661 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 146-5 chr10 44188140 44188402 + 0.75 NA Intergenic L1ME1|LINE|L1 -104479 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 144.5-40 chr14 59928306 59928701 + 0.75 NA intron (NR_075071, intron 3 of 32) intron (NR_075071, intron 3 of 32) 8790 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 176.5-7 chr10 66911632 66912133 + 0.75 NA intron (NR_111911, intron 3 of 6) intron (NR_111911, intron 3 of 6) -14154 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 143.75-59 chr22 25636080 25636475 + 0.75 NA intron (NM_001362778, intron 2 of 19) L1MC4|LINE|L1 71602 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 199.5-33 chr3 86919382 86919715 + 0.75 NA Intergenic L2c|LINE|L2 71601 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 215-13 chr12 24770056 24770593 + 0.75 NA Intergenic Intergenic 131898 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 134.25-58 chr3 119012878 119013177 + 0.75 NA intron (NM_001353319, intron 1 of 7) L2a|LINE|L2 21819 NM_001353319 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 152.75-15 chr13 109575894 109576290 + 0.75 NA Intergenic Intergenic -152182 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 120.5-36 chr15 77222138 77222409 + 0.75 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 3131 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 146.5-22 chr12 48062719 48063027 + 0.75 NA intron (NR_051992, intron 14 of 18) intron (NR_051992, intron 14 of 18) -42380 NM_001354741 5213 Hs.75160 NM_000289 ENSG00000152556 PFKM ATP-PFK|GSD7|PFK-1|PFK-A|PFK1|PFKA|PFKX|PPP1R122 phosphofructokinase, muscle protein-coding 200.25-27 chr20 44712089 44712609 + 0.75 NA intron (NR_132377, intron 4 of 4) intron (NR_132377, intron 4 of 4) -2495 NM_001323370 8839 Hs.592145 NM_003881 ENSG00000064205 CCN5 CT58|CTGF-L|WISP2 cellular communication network factor 5 protein-coding 215.5-38 chr5 44729584 44729901 + 0.75 NA Intergenic LTR39|LTR|ERV1 79051 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 199.25-17 chr17 51737943 51738397 + 0.75 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 302743 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 143-70 chr7 97487281 97487636 + 0.75 NA Intergenic Intergenic -244628 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 212-15 chr15 95539636 95540024 + 0.75 NA Intergenic L3|LINE|CR1 106737 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 125.75-32 chr18 63856875 63857135 + 0.75 NA Intergenic L1MA3|LINE|L1 -30700 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 176.25-48 chr3 122382545 122382911 + 0.75 NA intron (NM_001017928, intron 1 of 4) intron (NM_001017928, intron 1 of 4) 503 NM_001308326 131076 Hs.220594 NM_001017928 ENSG00000160124 CCDC58 - coiled-coil domain containing 58 protein-coding 118-44 chr3 98992179 98992488 + 0.75 NA Intergenic Intergenic -90638 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 161-18 chr11 69124352 69124641 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -31439 NM_001369201 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 149.5-5 chr1 32719057 32719355 + 0.75 NA Intergenic Intergenic -16436 NM_001161708 81493 Hs.712631 NM_030786 ENSG00000162520 SYNC SYNC1|SYNCOILIN syncoilin, intermediate filament protein protein-coding 194.5-67 chr6 162888878 162889211 + 0.75 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 161074 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 166.25-29 chr2 42698514 42698854 + 0.75 NA intron (NM_001330443, intron 11 of 16) intron (NM_001330443, intron 11 of 16) 65577 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 221-6 chr10 20772578 20773080 + 0.75 NA Intergenic L1M5|LINE|L1 124773 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 151.75-55 chr3 137429560 137429804 + 0.75 NA Intergenic L1ME3|LINE|L1 -334633 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 144.75-55 chr3 110536618 110536866 + 0.75 NA Intergenic L1MA3|LINE|L1 533217 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 224 chr1 225404531 225404952 + 0.75 NA intron (NM_194442, intron 11 of 13) intron (NM_194442, intron 11 of 13) 23297 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 124.5-75 chr4 8041840 8042007 + 0.75 NA intron (NM_001130084, intron 9 of 19) AluY|SINE|Alu 30065 NM_001286688 84448 Hs.233404 NM_032432 ENSG00000163995 ABLIM2 - actin binding LIM protein family member 2 protein-coding 146.5-18 chr11 60030456 60030746 + 0.75 NA intron (NM_001368161, intron 3 of 3).2 intron (NM_001368161, intron 3 of 3).2 6798 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 134.75-63 chr6 56657567 56657768 + 0.75 NA intron (NM_001144770, intron 7 of 94) L1MB3|LINE|L1 -14778 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 127.5-58 chr2 46112832 46113223 + 0.75 NA intron (NM_005400, intron 11 of 14) MIRb|SINE|MIR -184380 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 161.75-30 chr20 60155486 60155711 + 0.75 NA intron (NR_046099, intron 2 of 4) L1ME2|LINE|L1 17106 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 124-56 chr5 72937197 72937408 + 0.75 NA Intergenic MIR|SINE|MIR -18739 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 114.75-91 chr6 148257072 148257237 + 0.75 NA Intergenic Intergenic -15174 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 186.5-45 chr4 105987064 105987423 + 0.75 NA Intergenic Intergenic 35235 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 139.25-27 chr14 49009034 49009355 + 0.75 NA Intergenic Intergenic 577186 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 137-43 chr20 51657481 51657797 + 0.75 NA intron (NM_006045, intron 13 of 27) MER20|DNA|hAT-Charlie -94800 NM_001258295 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 137.5-44 chr17 61374164 61374491 + 0.75 NA intron (NM_001099432, intron 24 of 24) AluSz|SINE|Alu -6623 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 140.5-57 chr21 24957585 24957830 + 0.75 NA intron (NR_046198, intron 2 of 3) L1MEc|LINE|L1 117157 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 146.5-90 chr8 111895130 111895418 + 0.75 NA Intergenic Intergenic 518635 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 153.5-30 chr14 59228483 59228888 + 0.75 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -34756 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 167.75-19 chr14 62041023 62041351 + 0.75 NA intron (NM_001367661, intron 4 of 8) MLT2A2|LTR|ERVL -76170 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 133.25-39 chr2 49372080 49372344 + 0.75 NA Intergenic Intergenic -217685 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 209.25-57 chr9 100263474 100263845 + 0.75 NA intron (NR_134606, intron 10 of 16) MLT1D|LTR|ERVL-MaLR 88912 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 240.5-30 chr20 3231531 3232246 + 0.75 NA intron (NM_032034, intron 6 of 18) AluJr|SINE|Alu 5839 NM_032034 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 113.5-67 chr2 226388201 226388444 + 0.75 NA Intergenic L2|LINE|L2 245528 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 141-44 chr2 216645137 216645381 + 0.75 NA intron (NM_000597, intron 1 of 3) intron (NM_000597, intron 1 of 3) 11839 NM_000597 3485 Hs.438102 NM_000597 ENSG00000115457 IGFBP2 IBP2|IGF-BP53 insulin like growth factor binding protein 2 protein-coding 127.5-87 chr3 151980805 151981036 + 0.75 NA Intergenic Intergenic -52745 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 148.5-22 chr12 123751278 123751746 + 0.75 NA intron (NM_012463, intron 16 of 19) AluJb|SINE|Alu -10983 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 174.75-24 chr16 76020017 76020285 + 0.75 NA Intergenic Intergenic -257250 NR_136210 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 153-51 chr8 142699319 142699729 + 0.75 NA promoter-TSS (NM_001160354) promoter-TSS (NM_001160354) -587 NM_017527 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 199.5-35 chr3 111154001 111154436 + 0.75 NA intron (NM_001243288, intron 7 of 8) L1ME1|LINE|L1 82402 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 207-38 chr4 28329754 28330168 + 0.75 NA Intergenic Intergenic -489621 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 202.75-9 chr15 62070584 62070950 + 0.75 NA 3' UTR (NM_207322, exon 2 of 2) 3' UTR (NM_207322, exon 2 of 2) 3790 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 142.25-64 chr7 13721923 13722146 + 0.75 NA Intergenic UCON132b|DNA|hAT-Tip100 264480 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 161-47 chr3 130237563 130237845 + 0.75 NA intron (NR_027898, intron 12 of 22) intron (NR_027898, intron 12 of 22) 24884 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 148.75-22 chr16 13126088 13126494 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 224693 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 123.25-51 chr22 27928096 27928350 + 0.75 NA intron (NR_026963, intron 1 of 4) MER75|DNA|PiggyBac -7611 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 175-16 chr15 37734217 37734667 + 0.75 NA Intergenic MIRc|SINE|MIR -200165 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 205.25-45 chr8 107391977 107392494 + 0.75 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -55720 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 173.75-63 chrX 91302707 91303133 + 0.75 NA Intergenic L1M1|LINE|L1 -131919 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 147.25-14 chr14 28647850 28648097 + 0.75 NA Intergenic Intergenic 117346 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 139.25-23 chr12 95711553 95711752 + 0.75 NA intron (NM_001329701, intron 4 of 9) intron (NM_001329701, intron 4 of 9) 62397 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 140.5-93 chr6 37734990 37735419 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -37321 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 114.25-72 chr3 10791084 10791273 + 0.75 NA Intergenic L1ME3A|LINE|L1 -25050 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 121-73 chrX 48868288 48868526 + 0.75 NA Intergenic L1ME3A|LINE|L1 -29505 NM_001032382 10084 Hs.534384 NM_005710 ENSG00000102103 PQBP1 MRX2|MRX55|MRXS3|MRXS8|NPW38|RENS1|SHS polyglutamine binding protein 1 protein-coding 183.25-28 chr3 54675197 54675548 + 0.75 NA intron (NM_018398, intron 11 of 37) L2|LINE|L2 -35515 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 120.5-46 chr2 70395826 70396081 + 0.75 NA Intergenic MamGypLTR3a|LTR|Gypsy 85687 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 115.5-8 chr10 67757679 67757944 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -61616 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 233.25-38 chr8 131479758 131480237 + 0.75 NA Intergenic Intergenic -424096 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 116-18 chr13 40648862 40649180 + 0.75 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) 17620 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 134.5-71 chr4 89596950 89597176 + 0.75 NA Intergenic Intergenic -239338 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 170-46 chr6 34747467 34747869 + 0.75 NA Intergenic L2c|LINE|L2 -9426 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 124.5-108 chr8 123965176 123965389 + 0.75 NA intron (NM_001039112, intron 3 of 40) intron (NM_001039112, intron 3 of 40) 75500 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 186-28 chr2 104259198 104259551 + 0.75 NA Intergenic L1MA1|LINE|L1 148958 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 165.25-58 chr9 37386018 37386262 + 0.75 NA Intergenic L1MB2|LINE|L1 -36556 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 140.5-78 chr4 135141679 135142119 + 0.75 NA Intergenic Intergenic -18340 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 176.5-52 chr20 4357588 4357870 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -108442 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 174.5-25 chr14 41809894 41810220 + 0.75 NA intron (NM_001330106, intron 2 of 4) A-rich|Low_complexity|Low_complexity 203201 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 150.25-19 chr14 20871975 20872306 + 0.75 NA Intergenic L1M6|LINE|L1 -19263 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 152.75-51 chr4 135187773 135188107 + 0.75 NA Intergenic Intergenic -64381 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 163.25-26 chr14 63968420 63968704 + 0.75 NA intron (NM_015180, intron 11 of 114) L1MEf|LINE|L1 115558 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 113.5-88 chr4 75769293 75769463 + 0.75 NA intron (NM_001290049, intron 5 of 25) intron (NM_001290049, intron 5 of 25) 44856 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 120-16 chr1 248903498 248903739 + 0.75 NA Intergenic Intergenic -2617 NM_170725 267002 Hs.602037 NM_170725 ENSG00000185220 PGBD2 - piggyBac transposable element derived 2 protein-coding 152.75-39 chr21 18074118 18074353 + 0.75 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) 156895 NM_001204176 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 135.25-65 chr3 177316456 177316741 + 0.75 NA intron (NR_047465, intron 1 of 1) AluJr|SINE|Alu 22156 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 148.5-90 chr6 116806952 116807179 + 0.75 NA exon (NM_001286355, exon 3 of 5) exon (NM_001286355, exon 3 of 5) 21992 NM_001286354 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 197.5-34 chr2 147880697 147880982 + 0.75 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 35810 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 116-73 chr8 110200234 110200522 + 0.75 NA Intergenic Intergenic -224607 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 157.25 chr1 56480223 56480617 + 0.75 NA Intergenic Intergenic 65457 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 158.75-43 chr3 8533805 8534147 + 0.75 NA intron (NM_001278234, intron 2 of 4) L3|LINE|CR1 32153 NM_014583 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 121.75-42 chr2 134089024 134089381 + 0.75 NA Intergenic Intergenic -30733 NM_001371457 126.25-10 chr10 16095143 16095353 + 0.75 NA Intergenic L1MEc|LINE|L1 -234715 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 163.25-31 chr15 58817081 58817409 + 0.75 NA intron (NM_001040450, intron 4 of 8) L1ME3B|LINE|L1 45943 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 180-68 chr8 131343110 131343375 + 0.75 NA Intergenic LTR17|LTR|ERV1 -302333 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 115-68 chr6 108942397 108942576 + 0.75 NA intron (NM_001286609, intron 11 of 16) intron (NM_001286609, intron 11 of 16) -18383 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 168.5-46 chr2 121176142 121176429 + 0.75 NA Intergenic LTR50|LTR|ERVL 108917 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 124.25-17 chr10 112294185 112294550 + 0.75 NA intron (NM_058222, intron 7 of 10) intron (NM_058222, intron 7 of 10) -5245 NR_106771 102466189 NR_106771 ENSG00000276857 MIR6715A hsa-mir-6715a microRNA 6715a ncRNA 113.75-111 chr8 113089226 113089526 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 287776 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 148-21 chr14 61821022 61821298 + 0.75 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 8457 NM_001367661 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 175.75-26 chr21 21256135 21256599 + 0.75 NA intron (NM_001352592, intron 2 of 18) (ATA)n|Simple_repeat|Simple_repeat 109205 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 127-90 chr7 92427756 92427963 + 0.75 NA intron (NR_145992, intron 4 of 9) L1MD2|LINE|L1 9455 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 162.5-36 chr19 16909634 16910028 + 0.75 NA intron (NM_015692, intron 29 of 41) 7SLRNA|srpRNA|srpRNA -12884 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 161.75-35 chr3 126615260 126615575 + 0.75 NA exon (NM_052883, exon 13 of 16) exon (NM_052883, exon 13 of 16) 39707 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 172-52 chr9 78000453 78000754 + 0.75 NA intron (NM_002072, intron 1 of 6) Mam_R4|LINE|Dong-R4 31208 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 116.25-88 chr8 4606809 4607073 + 0.75 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 387973 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 115.75-94 chr8 99434375 99434644 + 0.75 NA intron (NM_017890, intron 22 of 61) MLT1E1|LTR|ERVL-MaLR 102221 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 114.25-19 chr11 61179398 61179648 + 0.75 NA Intergenic L1MA5|LINE|L1 -18097 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 124.75-75 chr6 54628539 54628729 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -218137 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 209.75-20 chr2 19009608 19010014 + 0.75 NA intron (NR_135287, intron 2 of 3) intron (NR_135287, intron 2 of 3) 17160 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 137.25-34 chr15 80295140 80295371 + 0.75 NA intron (NR_033833, intron 1 of 2) MER52C|LTR|ERV1 -43042 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 156.5-24 chr15 83036789 83037113 + 0.75 NA intron (NM_001011885, intron 4 of 6) L1ME3|LINE|L1 -25312 NM_001160114 123207 Hs.352541 NM_144597 ENSG00000169609 C15orf40 - chromosome 15 open reading frame 40 protein-coding 127.75-38 chr16 88967228 88967528 + 0.75 NA intron (NM_005187, intron 1 of 11) CpG 9829 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 124.5-24 chr12 19223400 19223566 + 0.75 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 18158 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 122.75-67 chr5 125547488 125547694 + 0.75 NA intron (NR_109887, intron 3 of 3) L1MDa|LINE|L1 54330 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 167.75-70 chr9 99975243 99975569 + 0.75 NA TTS (NM_017919) TTS (NM_017919) 68752 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 121-45 chr3 126287998 126288215 + 0.75 NA Intergenic CpG 69302 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 172-7 chr11 42801712 42802022 + 0.75 NA Intergenic Intergenic 467502 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 144-67 chr6 157929755 157930158 + 0.75 NA intron (NM_016224, intron 12 of 17) MER58A|DNA|hAT-Charlie -51907 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 136-61 chr7 38017327 38017739 + 0.75 NA Intergenic Intergenic 96214 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 173-23 chr16 80922765 80923129 + 0.75 NA Intergenic Intergenic -30351 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 131.25-28 chr12 61219691 61220017 + 0.75 NA Intergenic Intergenic 972985 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 129.75-23 chr14 25078155 25078435 + 0.75 NA Intergenic Intergenic -27998 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 162.5-101 chrX 74147784 74148093 + 0.75 NA intron (NR_028379, intron 5 of 6) L1PREC2|LINE|L1 70523 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 146.5-86 chr7 74350443 74350724 + 0.75 NA intron (NM_032421, intron 3 of 15) intron (NM_032421, intron 3 of 15) 61108 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 162.25-43 chr6 56531915 56532242 + 0.75 NA intron (NM_001144770, intron 56 of 94) L2b|LINE|L2 110811 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 170.5-44 chr2 230301935 230302282 + 0.75 NA intron (NM_001278453, intron 19 of 23) L1PBa|LINE|L1 -25063 NM_138402 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 195-52 chr7 20602474 20602822 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -13019 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 148.5-63 chr3 112283415 112283783 + 0.75 NA intron (NM_001320531, intron 2 of 27).2 intron (NM_001320531, intron 2 of 27).2 10617 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 207-12 chr12 70644876 70645339 + 0.75 NA intron (NR_073474, intron 9 of 10) Charlie15a|DNA|hAT-Charlie -7678 NM_001109754 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 148-52 chr5 25564321 25564564 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 373489 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 113.5-32 chr13 58546590 58546883 + 0.75 NA Intergenic Intergenic -313619 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 219.25-22 chr4 30756676 30757096 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 36517 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 206.5-10 chr11 81598684 81599000 + 0.75 NA Intergenic Intergenic 291994 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 163.75-62 chr6 65686840 65687128 + 0.75 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 20241 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 141.75-48 chr20 18838319 18838583 + 0.75 NA Intergenic FRAM|SINE|Alu -8248 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 134-56 chr4 85882739 85883022 + 0.75 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -47136 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 116.75-44 chr2 115189588 115189808 + 0.75 NA intron (NM_001321906, intron 2 of 26) HERVIP10F-int|LTR|ERV1 27543 NM_001321909 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 153-16 chr2 41376490 41376836 + 0.75 NA Intergenic Intergenic -500892 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 287.25-6 chr14 50181530 50182021 + 0.75 NA intron (NM_006939, intron 6 of 22) intron (NM_006939, intron 6 of 22) 49803 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 236-8 chr11 125116255 125116643 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie -4686 NR_047586 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 121 chr1 24779766 24779976 + 0.75 NA intron (NM_013943, intron 1 of 5) L2|LINE|L2 34424 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 256.75-12 chr8 54562657 54563046 + 0.75 NA Intergenic Intergenic -53245 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 118.25-97 chr7 15171123 15171350 + 0.75 NA Intergenic AluYm1|SINE|Alu -196378 NM_001350707 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 165.5-37 chr17 61005206 61005559 + 0.75 NA intron (NM_001353144, intron 16 of 25) intron (NM_001353144, intron 16 of 25) 327531 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 233.75-6 chr11 37378783 37379215 + 0.75 NA Intergenic Intergenic -559602 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 150.5-61 chr3 124453766 124454093 + 0.75 NA intron (NM_001024660, intron 21 of 59) intron (NM_001024660, intron 21 of 59) 79597 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 318-18 chr5 16322550 16323015 + 0.75 NA Intergenic Intergenic 118320 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 117.25-47 chr2 197148442 197148692 + 0.75 NA intron (NM_153697, intron 2 of 9) intron (NM_153697, intron 2 of 9) -49424 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 129-6 chr1 219192441 219192698 + 0.75 NA intron (NM_001350629, intron 3 of 5) intron (NM_001350629, intron 3 of 5) 17600 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 138.5-18 chr11 81246867 81247056 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -484158 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 119.5-90 chr4 74821445 74821708 + 0.75 NA Intergenic LTR75_1|LTR|ERV1 -27053 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 128.25-60 chr5 43357846 43358188 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy 39120 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 147-8 chr10 43323354 43323740 + 0.75 NA Intergenic Intergenic -48089 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 233.5-25 chr18 11179473 11179920 + 0.75 NA Intergenic AluJo|SINE|Alu -30934 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 121.75-89 chr8 55314025 55314249 + 0.75 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 141184 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 175.75-36 chr4 59898722 59899061 + 0.75 NA Intergenic LTR16A|LTR|ERVL 885318 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 121-11 chr10 813484 813756 + 0.75 NA intron (NM_015155, intron 17 of 17) intron (NM_015155, intron 17 of 17) 118085 NM_015155 23185 Hs.159069 NM_015155 ENSG00000107929 LARP4B KIAA0217|LARP5 La ribonucleoprotein domain family member 4B protein-coding 115.25-20 chr11 78946361 78946702 + 0.75 NA intron (NM_001098816, intron 6 of 33) Tigger1|DNA|TcMar-Tigger -371667 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 156.5-16 chr12 131055795 131056065 + 0.75 NA intron (NM_198827, intron 13 of 24) intron (NM_198827, intron 13 of 24) -61954 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 190.75-36 chr3 133731828 133732224 + 0.75 NA intron (NM_001354703, intron 7 of 22) intron (NM_001354703, intron 7 of 22) -14367 NM_001063 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 125.25-10 chr10 113529966 113530175 + 0.75 NA Intergenic Intergenic -20761 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 126.75-95 chr9 1839885 1840153 + 0.75 NA Intergenic Intergenic -175328 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 201-44 chr5 168817709 168818120 + 0.75 NA intron (NM_003062, intron 7 of 35) intron (NM_003062, intron 7 of 35) -49659 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 162.75-54 chr4 107504630 107504995 + 0.75 NA Intergenic Intergenic 215422 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 194.5-45 chr3 6880011 6880302 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 13861 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 225.5-52 chr9 90943547 90944100 + 0.75 NA Intergenic L1MA7|LINE|L1 116403 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 153.5-40 chr2 31243771 31243984 + 0.75 NA intron (NM_014600, intron 1 of 5) intron (NM_014600, intron 1 of 5) 9725 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 215.5-27 chr20 47625879 47626300 + 0.75 NA intron (NM_181659, intron 5 of 22) intron (NM_181659, intron 5 of 22) 124202 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 209.75-16 chr18 32409507 32409959 + 0.75 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 61149 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 158-27 chr19 51466781 51467042 + 0.75 NA Intergenic L1M2|LINE|L1 -8457 NM_001363548 27181 Hs.447899 NM_014442 ENSG00000105366 SIGLEC8 SAF2|SIGLEC-8|SIGLEC8L sialic acid binding Ig like lectin 8 protein-coding 152.25-17 chr12 112767908 112768330 + 0.75 NA intron (NM_001347952, intron 1 of 21) L1MB7|LINE|L1 -23419 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 137.5-94 chr5 27745881 27746094 + 0.75 NA Intergenic L1PA17|LINE|L1 273695 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 222.75-29 chr3 142837964 142838295 + 0.75 NA intron (NM_013363, intron 5 of 8) intron (NM_013363, intron 5 of 8) 50954 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 125-42 chr17 80855861 80856100 + 0.75 NA intron (NM_020761, intron 12 of 33) intron (NM_020761, intron 12 of 33) -50348 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 226-30 chr7 46109839 46110376 + 0.75 NA Intergenic Intergenic -188835 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 205.75-18 chr18 21798937 21799330 + 0.75 NA intron (NM_020774, intron 8 of 20) intron (NM_020774, intron 8 of 20) 26652 NR_029675 406922 NR_029675 ENSG00000283927 MIR133A1 MIRN133A1|mir-133a-1 microRNA 133a-1 ncRNA 220.75-21 chr4 108859981 108860565 + 0.75 NA intron (NM_198721, intron 22 of 36) AluSx|SINE|Alu -97220 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 131.5-84 chr7 26851699 26851988 + 0.75 NA intron (NM_003930, intron 3 of 12) intron (NM_003930, intron 3 of 12) 5880 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 140.25-45 chr20 45226722 45227006 + 0.75 NA Intergenic L1ME2|LINE|L1 5491 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 133.75-67 chr6 44243572 44243819 + 0.75 NA Intergenic AluSp|SINE|Alu -2471 NM_001271970 3326 Hs.509736 NM_007355 ENSG00000096384 HSP90AB1 D6S182|HSP84|HSP90B|HSPC2|HSPCB heat shock protein 90 alpha family class B member 1 protein-coding 185.25-46 chr6 110793425 110793857 + 0.75 NA intron (NM_001300963, intron 1 of 13) intron (NM_001300963, intron 1 of 13) -20980 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 221-25 chr20 39537640 39538110 + 0.75 NA Intergenic Intergenic -313127 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 124.5-92 chr6 97051075 97051388 + 0.75 NA intron (NR_136579, intron 2 of 7) intron (NR_136579, intron 2 of 7) 41155 NR_136579 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 118.25-87 chr6 16384272 16384598 + 0.75 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 145848 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 141.5-100 chr6 51170886 51171129 + 0.75 NA Intergenic L1MA5A|LINE|L1 352136 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 258-26 chr5 67616211 67616806 + 0.75 NA Intergenic L1ME1|LINE|L1 30281 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 137.25-40 chr18 63440618 63440964 + 0.75 NA Intergenic L1ME4a|LINE|L1 -18315 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 137-60 chr5 128543919 128544177 + 0.75 NA Intergenic L1MDa|LINE|L1 -5803 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 130-33 chr2 42859518 42859813 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -67082 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 117.5-45 chr2 27924977 27925333 + 0.75 NA intron (NM_199193, intron 3 of 13) MamTip3|DNA|hAT-Tip100 -34041 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 118.75-89 chr6 9578511 9578723 + 0.75 NA Intergenic Intergenic -825885 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 139.5-81 chr5 91623896 91624272 + 0.75 NA Intergenic L1PA15|LINE|L1 -240767 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 234.75-40 chr6 142278845 142279382 + 0.75 NA Intergenic Intergenic -22806 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 171.5-90 chr8 66257737 66258133 + 0.75 NA Intergenic Intergenic 65821 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 187-15 chr18 2011039 2011347 + 0.75 NA Intergenic Intergenic 560312 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 164.5-5 chr1 225501180 225501579 + 0.75 NA intron (NM_018212, intron 11 of 13) intron (NM_018212, intron 11 of 13) -72524 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 144.5-58 chr2 125328485 125328916 + 0.75 NA Intergenic Intergenic 789285 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 171.75-39 chr3 150793022 150793316 + 0.75 NA Intergenic Intergenic -30000 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 212-33 chr4 32709391 32709742 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB 358528 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 242.5-22 chr20 37398649 37399242 + 0.75 NA intron (NM_198291, intron 9 of 13) intron (NM_198291, intron 9 of 13) 52817 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 177.5-60 chr6 163171244 163171647 + 0.75 NA intron (NM_001080379, intron 4 of 4) MIRb|SINE|MIR 20557 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 113-6 chr1 99687934 99688182 + 0.75 NA intron (NM_017734, intron 6 of 7) intron (NM_017734, intron 6 of 7) 24895 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 144.25-5 chr1 147527056 147527295 + 0.75 NA Intergenic Intergenic -9300 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 165.5-78 chr6 151700728 151701214 + 0.75 NA intron (NM_001122742, intron 1 of 9) intron (NM_001122742, intron 1 of 9) 10475 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 115.75-49 chr2 226817475 226817698 + 0.75 NA intron (NM_001349069, intron 3 of 8) intron (NM_001349069, intron 3 of 8) 17427 NM_001349069 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 164.5-35 chr2 9997254 9997711 + 0.75 NA intron (NM_198182, intron 14 of 15) intron (NM_198182, intron 14 of 15) 45789 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 132.25-26 chr12 94929678 94929872 + 0.75 NA Intergenic Intergenic 73922 NM_018838 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 132-24 chr15 62972235 62972463 + 0.75 NA Intergenic MIRc|SINE|MIR -70398 NM_001365776 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 141.5-50 chr19 32233498 32233704 + 0.75 NA Intergenic AluJr|SINE|Alu -112009 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 174-2 chr1 65353632 65353948 + 0.75 NA intron (NM_001256865, intron 2 of 19) intron (NM_001256865, intron 2 of 19) 44247 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 126.5-28 chr12 120631835 120632169 + 0.75 NA Intergenic L2a|LINE|L2 -8617 NM_001033677 9478 Hs.458482 NM_004276 ENSG00000157782 CABP1 CALBRAIN|HCALB_BR calcium binding protein 1 protein-coding 180-30 chr17 65595708 65596093 + 0.75 NA Intergenic AluSz6|SINE|Alu -34252 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 175.25-52 chr7 24923982 24924347 + 0.75 NA intron (NM_015550, intron 1 of 22) L1ME4c|LINE|L1 -31543 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 195.25-3 chr1 151466151 151466587 + 0.75 NA Intergenic Charlie4z|DNA|hAT-Charlie -6875 NM_001194938 23126 Hs.489873 NM_015100 ENSG00000143442 POGZ MRD37|WHSUS|ZNF280E|ZNF635|ZNF635m pogo transposable element derived with ZNF domain protein-coding 152-71 chr9 80547878 80548154 + 0.75 NA Intergenic Intergenic 572993 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 158.25-39 chr4 39943299 39943686 + 0.75 NA intron (NM_001100399, intron 2 of 32) intron (NM_001100399, intron 2 of 32) 34419 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 124-21 chr15 75052066 75052363 + 0.75 NA Intergenic L2c|LINE|L2 8928 NM_001301104 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 244.5-26 chr3 178507058 178507504 + 0.75 NA Intergenic Intergenic -29155 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 153.25-4 chr1 150177782 150178087 + 0.75 NA intron (NR_135098, intron 3 of 3) intron (NR_135098, intron 3 of 3) 17206 NR_135098 105371433 Hs.599366 NR_135098 LOC105371433 - uncharacterized LOC105371433 ncRNA 123.5-101 chr7 137502292 137502579 + 0.75 NA intron (NM_001321710, intron 21 of 32) intron (NM_001321710, intron 21 of 32) -158702 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 211-29 chr6 65441211 65441613 + 0.75 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 138392 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 214-32 chr4 70494835 70495195 + 0.75 NA Intergenic Intergenic 22818 NM_152291 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 166-15 chr11 81108879 81109192 + 0.75 NA Intergenic Intergenic -346232 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 135.75-34 chr15 55473383 55473653 + 0.75 NA intron (NM_001033560, intron 4 of 8) intron (NM_001033560, intron 4 of 8) 25066 NR_037923 100533483 Hs.285051 NR_037923 ENSG00000261771 DNAAF4-CCPG1 DYX1C1-CCPG1 DNAAF4-CCPG1 readthrough (NMD candidate) ncRNA 192.5-50 chr6 74945280 74945732 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie 183276 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 127.25-57 chr22 30031498 30031672 + 0.75 NA TTS (NM_153050) TTS (NM_153050) 24536 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 117.25-44 chr2 65889886 65890220 + 0.75 NA Intergenic L1PA7|LINE|L1 -457454 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 153-50 chr8 112805894 112806273 + 0.75 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 162590 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 135.25-44 chr2 60506247 60506612 + 0.75 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 47069 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 147.5-25 chr14 54743898 54744172 + 0.75 NA intron (NM_015589, intron 3 of 11) intron (NM_015589, intron 3 of 11) -10798 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 132.5-71 chr3 45205428 45205677 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 20735 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 225.75-17 chr3 82774288 82774615 + 0.75 NA Intergenic Intergenic 788309 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 113.5-27 chr12 48266165 48266457 + 0.75 NA Intergenic Intergenic -62669 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 121.75-67 chr5 7806585 7806787 + 0.75 NA intron (NM_020546, intron 22 of 24) MLT1A|LTR|ERVL-MaLR 44447 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 127-89 chr7 87552474 87552700 + 0.75 NA intron (NM_001348944, intron 11 of 29) intron (NM_001348944, intron 11 of 29) 48297 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 156.5-9 chr11 50658174 50658472 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 249176 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 163.25-63 chr6 52280976 52281243 + 0.75 NA intron (NR_158964, intron 4 of 17) intron (NR_158964, intron 4 of 17) 3633 NM_001366371 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 123.5-81 chr4 140401477 140401764 + 0.75 NA intron (NM_001130675, intron 7 of 15) intron (NM_001130675, intron 7 of 15) 26028 NM_004362 1047 Hs.86368 NM_004362 ENSG00000153132 CLGN - calmegin protein-coding 177-41 chr3 165842460 165842835 + 0.75 NA Intergenic L1ME4a|LINE|L1 -5224 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 141.75-3 chr1 184166923 184167163 + 0.75 NA Intergenic HAL1ME|LINE|L1 115313 NM_052965 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 131.5-95 chr8 117915421 117915619 + 0.75 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 5393 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 130.75-4 chr1 66438912 66439219 + 0.75 NA Intergenic Intergenic 84530 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 152.5-65 chr3 1447336 1447650 + 0.75 NA Intergenic Intergenic 354469 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 121.75-49 chr20 43792259 43792601 + 0.75 NA Intergenic Intergenic -65428 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 154.25-34 chr18 7758598 7758916 + 0.75 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 191441 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 121.25-74 chr7 127907908 127908167 + 0.75 NA intron (NM_014390, intron 14 of 23) intron (NM_014390, intron 14 of 23) -89472 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 240.5-41 chr6 38312907 38313314 + 0.75 NA intron (NM_052893, intron 8 of 11) L1MA3|LINE|L1 -168486 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 131.75-16 chr11 113170147 113170345 + 0.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 103655 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 127-9 chr1 232543564 232543912 + 0.75 NA Intergenic AluJr4|SINE|Alu -28130 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 128.25-12 chr10 72836857 72837130 + 0.75 NA intron (NM_138357, intron 2 of 7) intron (NM_138357, intron 2 of 7) -56746 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 177-17 chr16 81472405 81472781 + 0.75 NA intron (NM_198390, intron 1 of 20) L2c|LINE|L2 -22761 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 189.25-49 chr8 134631209 134631604 + 0.75 NA intron (NM_020863, intron 3 of 15) MIR3|SINE|MIR 33335 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 130.75-21 chr14 47393440 47393822 + 0.75 NA intron (NM_001113498, intron 1 of 16) Arthur1A|DNA|hAT-Tip100 -50385 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 202.25-37 chr6 27078138 27078508 + 0.75 NA Intergenic L1MC4|LINE|L1 54473 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 144.75-91 chr9 34211280 34211626 + 0.75 NA intron (NM_001171203, intron 2 of 7) intron (NM_001171203, intron 2 of 7) 32410 NM_001171204 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 116.5-38 chr15 51537124 51537371 + 0.75 NA intron (NM_001174116, intron 11 of 42) Tigger19b|DNA|TcMar-Tigger 85524 NM_001174116 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 114.75-52 chr2 156183922 156184137 + 0.75 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 70902 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 118.25-55 chr20 53891659 53891882 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -16061 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 118.25-90 chr6 54794210 54794447 + 0.75 NA Intergenic MIRc|SINE|MIR -52443 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 167.25-74 chr7 11821270 11821640 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 10743 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 117-78 chr6 139030293 139030573 + 0.75 NA intron (NM_021243, intron 1 of 2) L1MA6|LINE|L1 1688 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 167-7 chr11 82541652 82541970 + 0.75 NA Intergenic Intergenic -137898 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 142.75-33 chr17 58765971 58766235 + 0.75 NA intron (NM_014906, intron 1 of 6) AluSx|SINE|Alu 10234 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 134.5-56 chr3 11109170 11109396 + 0.75 NA Intergenic L1MEf|LINE|L1 -27955 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 154.5-55 chr3 143068435 143068782 + 0.75 NA Intergenic Intergenic -51163 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 139.25-65 chr5 23836618 23836914 + 0.75 NA Intergenic L1PA13|LINE|L1 -114582 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 244.75-7 chr10 111671295 111671882 + 0.75 NA Intergenic L1MCa|LINE|L1 512177 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 115.5-9 chr10 82545242 82545517 + 0.75 NA intron (NR_163253, intron 3 of 10) AluY|SINE|Alu -312459 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 167.5-41 chr2 145235988 145236292 + 0.75 NA Intergenic Intergenic 568173 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 178-5 chr1 170723099 170723554 + 0.75 NA intron (NM_022716, intron 2 of 3) MER91C|DNA|hAT-Tip100 59195 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 158.75-25 chr16 87087898 87088274 + 0.75 NA Intergenic MER41A|LTR|ERV1 30302 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 161.25-27 chr16 8550555 8550951 + 0.75 NA intron (NM_001290098, intron 2 of 2) intron (NM_001290098, intron 2 of 2) 39085 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 186.75-6 chr12 52452765 52453093 + 0.75 NA promoter-TSS (NM_005555) promoter-TSS (NM_005555) -783 NM_005555 3854 Hs.708950 NM_005555 ENSG00000185479 KRT6B CK-6B|CK6B|K6B|KRTL1|PC2|PC4 keratin 6B protein-coding 173.25-45 chr3 95624772 95625131 + 0.75 NA Intergenic MamRep434|DNA|TcMar-Tigger 58242 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 120.25-44 chr3 56448492 56448788 + 0.75 NA intron (NR_132749, intron 1 of 17) MER58A|DNA|hAT-Charlie 19827 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 119.25-69 chr3 117702760 117702961 + 0.75 NA Intergenic MIR|SINE|MIR -11935 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 114-22 chr12 28659444 28659769 + 0.75 NA Intergenic L1MC1|LINE|L1 -468868 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 135.5-92 chr6 90314582 90314970 + 0.75 NA Intergenic Intergenic 2034 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 154-16 chr13 47527529 47527900 + 0.75 NA Intergenic Intergenic 404908 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 260.5-24 chr3 168872347 168872967 + 0.75 NA Intergenic Intergenic -29288 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 156.75-58 chr20 55893354 55893573 + 0.75 NA Intergenic Intergenic 112056 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 123.25-54 chr3 7249296 7249520 + 0.75 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 285876 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 170.75-33 chr18 68339543 68339853 + 0.75 NA Intergenic Intergenic 375410 NM_001350514 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 229.75-24 chr5 26500696 26501247 + 0.75 NA Intergenic Intergenic 537615 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 156.25-20 chr14 66787154 66787540 + 0.75 NA intron (NM_001024218, intron 3 of 21) L1MDa|LINE|L1 279940 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 151.75-66 chr5 133981427 133981682 + 0.75 NA intron (NM_003374, intron 5 of 8) intron (NM_003374, intron 5 of 8) 12865 NR_134247 105379183 Hs.543907 NR_134247 LOC105379183 - uncharacterized LOC105379183 ncRNA 124.75-54 chr20 48552672 48552962 + 0.75 NA Intergenic LTR16C|LTR|ERVL 192906 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 148-26 chr15 62653927 62654268 + 0.75 NA intron (NM_015059, intron 4 of 55) L1MA7|LINE|L1 6786 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 115.5-98 chr8 107050083 107050271 + 0.75 NA Intergenic Intergenic -279933 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 132.75-78 chr5 96067273 96067625 + 0.75 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) -11689 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 204-3 chr1 217119926 217120321 + 0.75 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) 17579 NM_001134285 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 141.25-16 chr11 106261780 106262101 + 0.75 NA intron (NR_120551, intron 4 of 4) intron (NR_120551, intron 4 of 4) 10533 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 175.5-45 chr2 182065448 182065744 + 0.75 NA intron (NM_001261425, intron 4 of 5) FAM|SINE|Alu 79743 NM_001261424 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 159.25-42 chr21 20729500 20729956 + 0.75 NA Intergenic LTR40a|LTR|ERVL 73380 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 132-86 chrX 11396184 11396473 + 0.75 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 31490 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 211.5-39 chr5 29647912 29648300 + 0.75 NA Intergenic L1PA16|LINE|L1 -232454 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 173.5-76 chr4 101608353 101608734 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -182064 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 128-13 chr14 28158658 28158955 + 0.75 NA Intergenic MER52A|LTR|ERV1 -485585 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 157.25-27 chr14 63245154 63245457 + 0.75 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 40862 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 182.75-24 chr21 17789703 17790074 + 0.75 NA 3' UTR (NM_001100421, exon 4 of 4) 3' UTR (NM_001100421, exon 4 of 4) 2621 NR_038871 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 113.75-96 chr7 24643204 24643389 + 0.75 NA intron (NM_016447, intron 4 of 12) intron (NM_016447, intron 4 of 12) 69844 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 148.5-9 chr10 64923979 64924205 + 0.75 NA intron (NR_134456, intron 1 of 1) intron (NR_134456, intron 1 of 1) 426 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 113.5-122 chr8 129596549 129596738 + 0.75 NA intron (NR_130917, intron 1 of 3) L2|LINE|L2 -21625 NR_130918 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 199.75-15 chr18 22008255 22008616 + 0.75 NA Intergenic AluJo|SINE|Alu 160533 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 135.25-80 chr5 117284966 117285208 + 0.75 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -130425 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 117 chr1 46630823 46631066 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14053 NM_201403 148932 Hs.632401 NM_145279 ENSG00000142961 MOB3C MOB1E|MOBKL2C MOB kinase activator 3C protein-coding 130.75-33 chr18 34639617 34639879 + 0.75 NA intron (NM_001198939, intron 1 of 21) intron (NM_001198939, intron 1 of 21) 46413 NM_001128175 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 130-37 chr2 107470118 107470335 + 0.75 NA Intergenic L2a|LINE|L2 -59193 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 157-23 chr17 44809939 44810316 + 0.75 NA intron (NM_001080383, intron 1 of 2) AluYj4|SINE|Alu 20160 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 115.5-42 chr2 33518582 33518889 + 0.75 NA intron (NM_015376, intron 3 of 16) Tigger3b|DNA|TcMar-Tigger 4860 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 115.25-9 chr10 54810853 54811244 + 0.75 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -9757 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 201.25-25 chr3 98221720 98222241 + 0.75 NA Intergenic Intergenic -42264 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 126-78 chr7 29820642 29820849 + 0.75 NA intron (NM_001080529, intron 1 of 8) intron (NM_001080529, intron 1 of 8) 14191 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 150.75-23 chr17 77193704 77194004 + 0.75 NA intron (NM_001143999, intron 6 of 16) intron (NM_001143999, intron 6 of 16) 8641 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 113.25-73 chr2 96754677 96754912 + 0.75 NA Intergenic Intergenic -6108 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 239.75-20 chr20 47056334 47056858 + 0.75 NA intron (NM_172110, intron 5 of 13) MIRb|SINE|MIR -110371 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 143-41 chr2 193406361 193406784 + 0.75 NA Intergenic Intergenic 656727 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 116-76 chr8 121585179 121585499 + 0.75 NA Intergenic Intergenic -54007 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 244.25-18 chr3 120788403 120788838 + 0.75 NA Intergenic Intergenic 45876 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 134.25-85 chr7 42281759 42282014 + 0.75 NA Intergenic Intergenic -44677 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 166-4 chr10 10383478 10383918 + 0.75 NA Intergenic L1ME1|LINE|L1 78651 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 198.5-49 chr7 7649366 7649962 + 0.75 NA intron (NM_002947, intron 4 of 7) L1MEd|LINE|L1 8912 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 137.5-100 chr6 66627150 66627355 + 0.75 NA Intergenic Intergenic 839373 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 139.5-72 chr4 142654889 142655149 + 0.75 NA intron (NM_003866, intron 2 of 26) MIRc|SINE|MIR 191516 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 128.25-33 chr2 100675123 100675412 + 0.75 NA Intergenic Intergenic 71528 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 122-64 chr6 11342507 11342734 + 0.75 NA intron (NR_073131, intron 1 of 9) L1M4a1|LINE|L1 39728 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 175-7 chr10 128148815 128149280 + 0.75 NA Intergenic AluSz|SINE|Alu -22624 NM_002417 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 146.75-16 chr14 61517355 61517767 + 0.75 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 52633 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 123.25-12 chr10 65308550 65308714 + 0.75 NA Intergenic Intergenic -262793 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 205.25-4 chr1 222653807 222654293 + 0.75 NA intron (NM_001300867, intron 10 of 22) intron (NM_001300867, intron 10 of 22) 9747 NM_001300867 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 130.5-47 chr2 80710764 80711138 + 0.75 NA Intergenic L1MEd|LINE|L1 397572 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 189.25-24 chr2 63895622 63896066 + 0.75 NA intron (NM_001005739, intron 22 of 22) intron (NM_001005739, intron 22 of 22) 53964 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 163-29 chr20 35912018 35912478 + 0.75 NA intron (NM_016436, intron 10 of 17) AluSg|SINE|Alu 42378 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 175.25-44 chr5 85713716 85714108 + 0.75 NA Intergenic Charlie22a|DNA|hAT-Charlie -568532 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 183.5-9 chr1 244069290 244069648 + 0.75 NA Intergenic MLT1O|LTR|ERVL-MaLR 16264 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 183.25-18 chr17 61886808 61887185 + 0.75 NA intron (NM_001351695, intron 15 of 24) intron (NM_001351695, intron 15 of 24) -23437 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 122.75-48 chr2 119874715 119875082 + 0.75 NA intron (NM_002830, intron 3 of 26) L1ME4b|LINE|L1 114976 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 121.25-60 chr5 113365593 113365890 + 0.75 NA intron (NM_001085377, intron 2 of 18) MSTA|LTR|ERVL-MaLR 69248 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 160.25-23 chr15 23970236 23970481 + 0.75 NA Intergenic L1MC3|LINE|L1 -4789 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 130.5-15 chr10 85523862 85524089 + 0.75 NA Intergenic Intergenic -53756 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 161.75 chr1 234826991 234827309 + 0.75 NA Intergenic Intergenic -67094 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 132.25-28 chr13 23164273 23164461 + 0.75 NA Intergenic Intergenic -16554 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 203-19 chr2 75387960 75388436 + 0.75 NA Intergenic MER50-int|LTR|ERV1 -135870 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 131.25-64 chr4 23544839 23545133 + 0.75 NA Intergenic L1PA10|LINE|L1 336306 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 135.75-20 chr11 18422037 18422269 + 0.75 NA intron (NM_017448, intron 3 of 7) intron (NM_017448, intron 3 of 7) 9835 NM_017448 3948 Hs.654377 NM_002301 ENSG00000166796 LDHC CT32|LDH3|LDHX lactate dehydrogenase C protein-coding 262.5-31 chr5 27026510 27027183 + 0.75 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 11740 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 140.5-39 chr2 20591687 20591952 + 0.75 NA intron (NR_046836, intron 1 of 1) AluSz6|SINE|Alu 729 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 270.5-18 chr21 29979985 29980429 + 0.75 NA Intergenic MADE1|DNA|TcMar-Mariner -40155 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 174.25-35 chr2 124333534 124333783 + 0.75 NA intron (NM_130773, intron 3 of 23) LTR49-int|LTR|ERV1 308371 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 121.5-49 chr17 80172083 80172342 + 0.75 NA intron (NR_047566, intron 1 of 21) intron (NR_047566, intron 1 of 21) 2182 NR_047566 79092 Hs.675480 NM_024110 ENSG00000141527 CARD14 BIMP2|CARMA2|PRP|PSORS2|PSS1 caspase recruitment domain family member 14 protein-coding 130-30 chr18 32114019 32114313 + 0.75 NA intron (NM_001191324, intron 3 of 6) intron (NM_001191324, intron 3 of 6) 21560 NM_001191324 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 200-30 chr3 115446062 115446460 + 0.75 NA Intergenic Intergenic -177249 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 131.75-84 chr8 125773227 125773543 + 0.75 NA Intergenic Intergenic 177812 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 160.25-14 chr12 37890060 37890296 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -426596 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 133-4 chr10 54721472 54721654 + 0.75 NA intron (NM_001354404, intron 4 of 34) L1PB4|LINE|L1 79668 NM_001142763 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 154.5-64 chr5 114076205 114076614 + 0.75 NA Intergenic Intergenic -285661 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 123.25-52 chr22 29127313 29127700 + 0.75 NA intron (NM_001039570, intron 5 of 8) AluSx|SINE|Alu 54471 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 168.25-67 chr8 139471306 139471729 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 231606 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 115.25-10 chr10 60379654 60379908 + 0.75 NA intron (NM_001204403, intron 2 of 43) L1MA5A|LINE|L1 10094 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 126-75 chr6 130025500 130025871 + 0.75 NA intron (NM_001007102, intron 2 of 21) intron (NM_001007102, intron 2 of 21) 6041 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 164-38 chr3 88521347 88521613 + 0.75 NA Intergenic L1PB1|LINE|L1 183024 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 142.75-7 chr1 163174451 163174765 + 0.75 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 12933 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 116.75-89 chrX 88909317 88909515 + 0.75 NA Intergenic Intergenic 162191 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 113-38 chr17 82761332 82761516 + 0.75 NA intron (NM_005993, intron 2 of 38) L1ME2|LINE|L1 9359 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 143.5-80 chr5 16504259 16504674 + 0.75 NA intron (NM_001034850, intron 3 of 8) MER63B|DNA|hAT-Blackjack 4532 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 125.75-60 chr5 85141141 85141478 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -756429 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 155.75-68 chr8 81175918 81176186 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR -63984 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 176-11 chr11 26489485 26489802 + 0.75 NA intron (NM_001313727, intron 1 of 23) THE1A-int|LTR|ERVL-MaLR 15741 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 178.75-15 chr15 92909447 92909867 + 0.75 NA intron (NM_001042572, intron 2 of 12) AluJb|SINE|Alu 5258 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 163.75-19 chr14 44593579 44593913 + 0.75 NA Intergenic HERVL40-int|LTR|ERVL 86337 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 166-26 chr16 63138735 63139090 + 0.75 NA Intergenic Intergenic -1102474 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 171.75-30 chr2 182883986 182884255 + 0.75 NA Intergenic L1MB7|LINE|L1 -17483 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 142.25-27 chr16 9128921 9129299 + 0.75 NA Intergenic Intergenic 37466 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 121.25-87 chr8 137972978 137973190 + 0.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 110461 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 133.75-26 chr14 73890927 73891206 + 0.75 NA intron (NR_040251, intron 1 of 11) intron (NR_040251, intron 1 of 11) 4207 NM_001242927 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 192.5-10 chr11 83570201 83570636 + 0.75 NA intron (NM_001142699, intron 19 of 27) MIRc|SINE|MIR 112007 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150.5-81 chr6 145131767 145132003 + 0.75 NA Intergenic L1MA2|LINE|L1 554992 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 129-24 chr15 25591112 25591478 + 0.75 NA Intergenic AluJr|SINE|Alu -152239 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 144.75-75 chr7 2276379 2276585 + 0.75 NA intron (NM_013321, intron 2 of 10) intron (NM_013321, intron 2 of 10) -18905 NR_106895 102465503 NR_106895 ENSG00000284047 MIR6836 hsa-mir-6836 microRNA 6836 ncRNA 205.25-26 chr4 61069179 61069660 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB -74237 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 117-5 chr1 181602230 181602443 + 0.75 NA intron (NM_001205293, intron 6 of 47) Tigger4a|DNA|TcMar-Tigger 118819 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 143.25-17 chr12 11635142 11635416 + 0.75 NA Intergenic L1M5|LINE|L1 -14575 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 172.5-88 chr8 102565903 102566157 + 0.75 NA Intergenic Intergenic 14441 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 169.75-12 chr11 21484029 21484433 + 0.75 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -708854 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 231.5-40 chr6 67762961 67763304 + 0.75 NA Intergenic L1MA7|LINE|L1 -292219 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 131.75-8 chr10 30503989 30504297 + 0.75 NA Intergenic L2|LINE|L2 69497 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 203.5-34 chr4 44333264 44333781 + 0.75 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 115287 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 168.25-20 chr14 71840176 71840506 + 0.75 NA Intergenic L1M1|LINE|L1 -91830 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 123.5-49 chr2 54474449 54474817 + 0.75 NA intron (NM_003128, intron 1 of 35) L1ME4a|LINE|L1 18306 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 144-71 chr7 86509296 86509628 + 0.75 NA Intergenic L2a|LINE|L2 -134447 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 147.5-69 chr5 62933275 62933598 + 0.75 NA Intergenic Intergenic 354617 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 147.25-39 chr3 1394264 1394505 + 0.75 NA intron (NM_001289080, intron 20 of 22) intron (NM_001289080, intron 20 of 22) 301360 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 163.25-59 chr5 95161243 95161616 + 0.75 NA intron (NM_024717, intron 1 of 22) L1MA7|LINE|L1 -79563 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 223.75-10 chr2 50297981 50298405 + 0.75 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 49561 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 122.5-20 chr12 59632803 59633019 + 0.75 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) 36882 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 122.5-30 chr14 57369548 57369738 + 0.75 NA Intergenic L1PA7|LINE|L1 -20943 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 126.75-93 chr8 85950491 85950691 + 0.75 NA Intergenic Intergenic 119077 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 141.75-87 chrX 155683556 155683808 + 0.75 NA intron (NM_001304990, intron 1 of 2) L2b|LINE|L2 -70730 NM_001184797 55217 Hs.133321 NM_018196 ENSG00000185973 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 186.75-20 chr17 52110198 52110686 + 0.75 NA intron (NM_001082533, intron 2 of 9) MIRb|SINE|MIR 48272 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 140-7 chr10 66086946 66087149 + 0.75 NA intron (NM_001127384, intron 14 of 17) LTR9D|LTR|ERV1 515622 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 113-29 chr15 27110310 27110539 + 0.75 NA intron (NM_001270873, intron 3 of 5) L1MCa|LINE|L1 50895 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 120.75-42 chr19 38254800 38255123 + 0.75 NA intron (NM_033256, intron 1 of 3) AluSp|SINE|Alu 1413 NM_033256 94274 Hs.631569 NM_033256 ENSG00000167641 PPP1R14A CPI-17|CPI17|PPP1INL protein phosphatase 1 regulatory inhibitor subunit 14A protein-coding 151.5-3 chr1 83641307 83641723 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 195461 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 133.25-66 chr5 121487538 121487844 + 0.75 NA Intergenic Intergenic 165141 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 174.25-51 chr6 37193627 37193986 + 0.75 NA Intergenic Tigger16a|DNA|TcMar-Tigger 23654 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 171.25-32 chr22 40252440 40252775 + 0.75 NA intron (NM_015088, intron 3 of 20) intron (NM_015088, intron 3 of 20) 74682 NM_015088 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 137.5-123 chr8 134766668 134766951 + 0.75 NA Intergenic MIR|SINE|MIR 33798 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 117.25-5 chr1 83126660 83126946 + 0.75 NA intron (NR_147074, intron 9 of 10) L1ME1|LINE|L1 -140595 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 187.25-44 chr4 46121755 46122089 + 0.75 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 2132 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 133.75-29 chr15 63042460 63042708 + 0.75 NA promoter-TSS (NM_001018007) promoter-TSS (NM_001018007) -163 NM_001365776 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 123.5-23 chr11 118508877 118509127 + 0.75 NA intron (NM_005933, intron 28 of 35) intron (NM_005933, intron 28 of 35) -18431 NM_001346096 143941 Hs.653449 NM_001080441 ENSG00000172425 TTC36 HBP21 tetratricopeptide repeat domain 36 protein-coding 119.75-10 chr10 37498675 37498835 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 104176 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 312.75-10 chrX 155100103 155100776 + 0.75 NA intron (NM_024332, intron 8 of 11) L1MC4|LINE|L1 29019 NM_024332 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 130.25-38 chr17 65117129 65117353 + 0.75 NA Intergenic L2c|LINE|L2 16429 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 143.5-60 chr20 12156221 12156457 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 238446 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 115.75-15 chr12 971387 971568 + 0.75 NA intron (NM_001297419, intron 1 of 11) intron (NM_001297419, intron 1 of 11) 18564 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 153-26 chr21 43989482 43989714 + 0.75 NA Intergenic Intergenic -22711 NM_003274 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 129-33 chr18 39857794 39858125 + 0.75 NA intron (NR_151703, intron 1 of 8) MLT1I|LTR|ERVL-MaLR 16250 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 147.5-21 chr12 68309624 68309942 + 0.75 NA intron (NM_001368282, intron 11 of 13) intron (NM_001368282, intron 11 of 13) 22579 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 116.5-90 chr5 39156348 39156687 + 0.75 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 63046 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 118.75-4 chr1 66975403 66975668 + 0.75 NA intron (NM_001077700, intron 11 of 13) AluJb|SINE|Alu 45279 NM_001077701 57708 Hs.605432 NM_020948 ENSG00000198160 MIER1 ER1|MI-ER1 MIER1 transcriptional regulator protein-coding 184.75-28 chr2 5229843 5230342 + 0.75 NA Intergenic Intergenic 461026 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 115.25-66 chr3 145796661 145796985 + 0.75 NA Intergenic L1PA16|LINE|L1 272362 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 135-9 chr1 209584843 209585101 + 0.75 NA intron (NM_020439, intron 1 of 12) MIRc|SINE|MIR 1258 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 215.5 chr1 82507431 82507777 + 0.75 NA Intergenic AluSc8|SINE|Alu -395579 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 156 chr1 18028306 18028710 + 0.75 NA Intergenic Intergenic -37149 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 187.25-54 chr5 43115948 43116323 + 0.75 NA Intergenic Intergenic -4779 NM_001330710 7690 Hs.535804 NM_003432 ENSG00000172262 ZNF131 ZBTB35|pHZ-10 zinc finger protein 131 protein-coding 140.25-46 chr22 19738372 19738648 + 0.75 NA Intergenic Intergenic 14967 NM_000407 2812 Hs.283743 NM_000407 ENSG00000203618 GP1BB BDPLT1|BS|CD42C|GPIBB|GPIbbeta glycoprotein Ib platelet subunit beta protein-coding 118-21 chr12 117249512 117249669 + 0.75 NA intron (NM_001204213, intron 16 of 27) MamRep434|DNA|TcMar-Tigger 55462 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 134-78 chr9 129127603 129127838 + 0.75 NA intron (NM_178003, intron 3 of 8) intron (NM_178003, intron 3 of 8) 16032 NM_001193397 5524 Hs.400740 NM_021131 ENSG00000119383 PTPA PP2A|PPP2R4|PR53 protein phosphatase 2 phosphatase activator protein-coding 117.25-104 chrX 80179533 80179800 + 0.75 NA Intergenic MER66-int|LTR|ERV1 155652 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 191-10 chr11 112500483 112500860 + 0.75 NA intron (NR_120559, intron 2 of 2) L1MC3|LINE|L1 16326 NR_120560 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 163.5-62 chr4 35794568 35794875 + 0.75 NA Intergenic L1MA6|LINE|L1 449218 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 153-45 chr5 133003988 133004320 + 0.75 NA intron (NR_131767, intron 2 of 3) Charlie2b|DNA|hAT-Charlie 22395 NR_131767 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 123-5 chr1 213750069 213750391 + 0.75 NA Intergenic Intergenic -174519 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 144.25 chr1 30170607 30170839 + 0.75 NA Intergenic L1ME1|LINE|L1 -133111 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 141.5-72 chr3 10590171 10590410 + 0.75 NA intron (NM_001353564, intron 1 of 20) L1ME1|LINE|L1 29671 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 151.5-4 chr1 85323242 85323524 + 0.75 NA intron (NM_001134445, intron 6 of 6) intron (NM_001134445, intron 6 of 6) -46751 NM_003921 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 219.25-9 chr12 23896146 23896637 + 0.75 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 53279 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 124.25-10 chr1 231198664 231198905 + 0.75 NA intron (NM_001300889, intron 4 of 11) L1ME4a|LINE|L1 -11157 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 128.5-23 chr14 57965870 57966183 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -99934 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 176.5-3 chr1 227644715 227644982 + 0.75 NA intron (NR_102302, intron 2 of 5) MER5B|DNA|hAT-Charlie 52859 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 119.75-81 chr7 144147572 144147786 + 0.75 NA Intergenic L1M1|LINE|L1 18566 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 179.75-59 chr8 123955209 123955661 + 0.75 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 85347 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 121-69 chr7 79203544 79203893 + 0.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 194730 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 141.25-70 chr7 111206348 111206600 + 0.75 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 115347 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 120.75-86 chr6 64865677 64866065 + 0.75 NA intron (NM_001292009, intron 19 of 43) L2|LINE|L2 -435547 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 130.75-61 chr5 115656339 115656672 + 0.75 NA intron (NR_104674, intron 3 of 4) Zaphod|DNA|hAT-Tip100 16147 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 117.75-46 chr20 43285859 43286202 + 0.75 NA Intergenic L1M7|LINE|L1 -96124 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 134-28 chr16 5041112 5041422 + 0.75 NA intron (NR_038913, intron 1 of 1) AluJb|SINE|Alu -7332 NM_016256 51172 Hs.21334 NM_016256 ENSG00000103174 NAGPA APAA|UCE N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 143.75-14 chr10 88941157 88941443 + 0.75 NA exon (NM_001320855, exon 6 of 9) exon (NM_001320855, exon 6 of 9) 8616 NR_125373 100132116 NR_125373 ENSG00000180139 ACTA2-AS1 UC001kfo|ZXF1|uc001kfo.1 ACTA2 antisense RNA 1 ncRNA 122-13 chr11 44901998 44902295 + 0.75 NA intron (NM_130783, intron 3 of 9) intron (NM_130783, intron 3 of 9) 48014 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 154.75-43 chr22 34961616 34961944 + 0.75 NA intron (NR_138042, intron 1 of 4) AluSx4|SINE|Alu 36136 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 179.5-45 chr16 80230563 80230856 + 0.75 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -310025 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 168.5-9 chr10 53765661 53765996 + 0.75 NA Intergenic Intergenic -720402 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 119-27 chr14 72135518 72135789 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 202126 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 137.75-72 chr5 93781311 93781661 + 0.75 NA intron (NM_032042, intron 9 of 10) L1PB4|LINE|L1 -39886 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 156-14 chr10 53512899 53513194 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -741346 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 124-16 chr12 15522029 15522284 + 0.75 NA intron (NM_030667, intron 10 of 26) MIRc|SINE|MIR -24455 NM_030671 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 113.75-70 chr3 39706563 39706770 + 0.75 NA Intergenic AluSz|SINE|Alu -102248 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 157.25-57 chr7 41800515 41800775 + 0.75 NA Intergenic Intergenic -97555 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 150.5-82 chr6 156939497 156939892 + 0.75 NA intron (NM_020732, intron 5 of 19) intron (NM_020732, intron 5 of 19) -96733 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 119.5-38 chr15 37016662 37016903 + 0.75 NA intron (NM_172316, intron 8 of 12) intron (NM_172316, intron 8 of 12) -43881 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 115.75-93 chr8 84109865 84110171 + 0.75 NA Intergenic Intergenic -72769 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 155-60 chr8 54972286 54972687 + 0.75 NA Intergenic Intergenic -129542 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 198.75-14 chr16 61765710 61766023 + 0.75 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 270572 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 214.75-18 chr2 141884889 141885235 + 0.75 NA intron (NM_018557, intron 1 of 90) (TATTGA)n|Simple_repeat|Simple_repeat 246639 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 119-51 chr3 64784729 64784960 + 0.75 NA intron (NR_038264, intron 1 of 5) L1MB5|LINE|L1 -96844 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 121.75-20 chr14 47419481 47419699 + 0.75 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -76344 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 114-65 chr4 55155809 55156116 + 0.75 NA Intergenic Intergenic -30367 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 138-29 chr17 53980642 53980957 + 0.75 NA Intergenic Intergenic 157872 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 129.5-40 chr2 33295755 33296096 + 0.75 NA intron (NM_206943, intron 20 of 33) intron (NM_206943, intron 20 of 33) -122591 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 120-22 chr11 110238310 110238482 + 0.75 NA intron (NM_001260493, intron 10 of 15) intron (NM_001260493, intron 10 of 15) 58316 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 174-25 chr18 33044648 33044893 + 0.75 NA intron (NM_001308126, intron 21 of 23) L1PB4|LINE|L1 -271747 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 147-12 chr10 71592982 71593419 + 0.75 NA intron (NM_052836, intron 9 of 12) L1ME3Cz|LINE|L1 -81280 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 153.75-83 chr8 26117948 26118304 + 0.75 NA Intergenic Intergenic -72713 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 162.75-33 chr18 75079049 75079482 + 0.75 NA Intergenic Intergenic 126248 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 125.5-60 chr19 29725446 29725881 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR -9874 NM_001256047 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 212.5-12 chr14 45869355 45869856 + 0.75 NA Intergenic MER50|LTR|ERV1 -154003 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 113-88 chr6 88941015 88941192 + 0.75 NA exon (NM_003800, exon 2 of 16) exon (NM_003800, exon 2 of 16) 22515 NM_003800 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 146.5-97 chr9 104176002 104176275 + 0.75 NA Intergenic Intergenic 81511 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 151.25-26 chr17 7232319 7232618 + 0.75 NA intron (NM_004422, intron 1 of 14) intron (NM_004422, intron 1 of 14) 2049 NM_004422 1856 Hs.118640 NM_004422 ENSG00000004975 DVL2 - dishevelled segment polarity protein 2 protein-coding 181.75-10 chr13 57688394 57688886 + 0.75 NA intron (NM_001040429, intron 3 of 3) intron (NM_001040429, intron 3 of 3) 56896 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 182.75-38 chr4 178405094 178405337 + 0.75 NA Intergenic Intergenic -497279 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 225.5-18 chr15 86843976 86844477 + 0.75 NA intron (NM_152336, intron 23 of 24) L1ME1|LINE|L1 -88654 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 141.25-52 chr3 101558271 101558563 + 0.75 NA Intergenic L2|LINE|L2 -3451 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 138.5-15 chr10 46020977 46021174 + 0.75 NA intron (NM_001145263, intron 1 of 9) intron (NM_001145263, intron 1 of 9) -1538 NM_001145262 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 172-29 chr3 55192152 55192515 + 0.75 NA Intergenic Intergenic 14161 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 180.5-80 chr7 15637469 15637791 + 0.75 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -30317 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 133-2 chr1 188852623 188852896 + 0.75 NA Intergenic L1MC3|LINE|L1 1409131 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 211.75-26 chr3 111765540 111766024 + 0.75 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 33286 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 134.5-5 chr1 174479648 174480058 + 0.75 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 31889 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 114.75-110 chr9 99861518 99861690 + 0.75 NA intron (NM_006981, intron 7 of 7) MIR3|SINE|MIR 39719 NM_173199 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 135.75-55 chr2 199495573 199495888 + 0.75 NA Intergenic MER49|LTR|ERV1 -24464 NM_015265 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 168-22 chr12 98504205 98504512 + 0.75 NA promoter-TSS (NR_038383) promoter-TSS (NR_038383) -503 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 142-71 chr8 130981652 130981970 + 0.75 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 59098 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 220.75-24 chr5 84213544 84213893 + 0.75 NA intron (NM_001278642, intron 2 of 9) intron (NM_001278642, intron 2 of 9) 171149 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 151-70 chr8 80898965 80899244 + 0.75 NA Intergenic Intergenic -24323 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 204-30 chr4 38221426 38221826 + 0.75 NA Intergenic L1MC1|LINE|L1 101672 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 295.5-3 chr1 190629569 190630155 + 0.75 NA intron (NR_033922, intron 1 of 4) L1M1|LINE|L1 4972 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 116.5-76 chr21 18535887 18536064 + 0.75 NA Intergenic Intergenic -132190 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 170-7 chr12 29979677 29980002 + 0.75 NA Intergenic Intergenic -195080 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 170.25-9 chr11 95157933 95158267 + 0.75 NA intron (NR_110303, intron 2 of 2) MIR|SINE|MIR 7561 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 115.25-84 chr6 79028251 79028438 + 0.75 NA intron (NM_017934, intron 7 of 39) L2c|LINE|L2 49910 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 136.5-40 chr16 4105180 4105446 + 0.75 NA intron (NM_001116, intron 2 of 10) Charlie1b|DNA|hAT-Charlie 11129 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 224.75-6 chr12 7721833 7722234 + 0.75 NA Intergenic AluSx|SINE|Alu 10600 NM_199286 359787 Hs.131358 NM_199286 ENSG00000187569 DPPA3 Pgc7|STELLA developmental pluripotency associated 3 protein-coding 149.5-33 chr15 70881890 70882259 + 0.75 NA 3' UTR (NM_020147, exon 3 of 3) 3' UTR (NM_020147, exon 3 of 3) 10359 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 162.75-23 chr16 24387242 24387528 + 0.75 NA Intergenic LTR1C|LTR|ERV1 131832 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 145.75-65 chr7 22643719 22643993 + 0.75 NA Intergenic L1MA9|LINE|L1 21677 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 133-70 chr8 141264478 141264785 + 0.75 NA Intergenic L1M5|LINE|L1 -10002 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 134.5-92 chr7 125229239 125229457 + 0.75 NA TTS (NR_110182) TTS (NR_110182) 34943 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 198.5-28 chr2 162391989 162392424 + 0.75 NA intron (NM_033272, intron 12 of 15) intron (NM_033272, intron 12 of 15) 47838 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 114-8 chr1 229401922 229402191 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 32040 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 124-65 chr6 61710764 61710979 + 0.75 NA intron (NR_146872, intron 7 of 9) MER5A|DNA|hAT-Charlie 136741 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 158.5-18 chr10 81085346 81085581 + 0.75 NA Intergenic L1MC1|LINE|L1 435666 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 134.25-18 chr14 65975060 65975310 + 0.75 NA Intergenic Intergenic 504083 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 150-9 chr1 188953560 188953857 + 0.75 NA Intergenic L1PA16|LINE|L1 1510080 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 175.25-39 chr3 99265546 99265863 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -364009 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 155.75-53 chr5 87935264 87935521 + 0.75 NA Intergenic Intergenic 273350 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 127.5-33 chr14 47981517 47981937 + 0.75 NA Intergenic Intergenic -186713 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 115.5-87 chr7 12952531 12952793 + 0.75 NA Intergenic Intergenic 265029 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 121-6 chr1 106147487 106147770 + 0.75 NA Intergenic Intergenic -119375 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 113.75-2 chr1 36747207 36747423 + 0.75 NA Intergenic L1ME3G|LINE|L1 -264001 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 193.25-44 chr7 42451304 42451636 + 0.75 NA Intergenic Intergenic -214261 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 183.75-3 chr1 177738863 177739169 + 0.75 NA Intergenic L2c|LINE|L2 38492 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 166.75 chr1 169981706 169981988 + 0.75 NA intron (NM_014970, intron 15 of 19) intron (NM_014970, intron 15 of 19) 87068 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 182.25-14 chr15 91644557 91644897 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger 181388 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 130-75 chr7 25153663 25154008 + 0.75 NA intron (NM_138811, intron 6 of 9) intron (NM_138811, intron 6 of 9) 26519 NM_001371352 188-35 chr6 35721484 35721958 + 0.75 NA intron (NM_001145775, intron 1 of 11) AluSp|SINE|Alu 6862 NM_001145775 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 179-37 chr2 222914435 222914850 + 0.75 NA intron (NM_004457, intron 4 of 16) L2|LINE|L2 53606 NM_004457 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 173.75-24 chr20 16097534 16097816 + 0.75 NA Intergenic MIRb|SINE|MIR -111793 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 124.75-87 chr9 110659733 110660079 + 0.75 NA Intergenic L2c|LINE|L2 -8885 NM_001166280 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 142.5-45 chr2 239286911 239287204 + 0.75 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -18405 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 165.75-55 chr5 107948446 107948773 + 0.75 NA intron (NM_001163315, intron 7 of 8) L2|LINE|L2 -277672 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 115-64 chr5 130196548 130196799 + 0.75 NA Intergenic Intergenic 292208 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 195.75-29 chr3 102257476 102257938 + 0.75 NA Intergenic Intergenic 94002 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 138-62 chr5 129383748 129384024 + 0.75 NA Intergenic AluSz|SINE|Alu 13261 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 149.75-42 chr3 115188163 115188548 + 0.75 NA Intergenic LTR8|LTR|ERV1 -41067 NM_001348803 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 171.5-56 chr3 130704031 130704542 + 0.75 NA intron (NM_014602, intron 12 of 19) intron (NM_014602, intron 12 of 19) 42543 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 191.25-6 chr1 223317424 223317734 + 0.75 NA intron (NM_017982, intron 2 of 8) intron (NM_017982, intron 2 of 8) 46597 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 159.25-63 chr7 28152205 28152547 + 0.75 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -28081 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 122.5-47 chr2 68230779 68231016 + 0.75 NA intron (NM_000945, intron 1 of 5) L1MDa|LINE|L1 21635 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 157.25-37 chr2 56115263 56115656 + 0.75 NA Intergenic MER66B|LTR|ERV1 -25077 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 170-51 chr8 116894038 116894312 + 0.75 NA Intergenic L1MA4|LINE|L1 -19309 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 140.25-82 chr6 165691344 165691677 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -29230 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 142-44 chr3 79341033 79341310 + 0.75 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -70556 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 157.5-39 chr18 1223715 1224170 + 0.75 NA Intergenic Intergenic 135687 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 163-11 chr14 20262503 20262792 + 0.75 NA Intergenic MIR3|SINE|MIR 19855 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 132-28 chr17 44941092 44941386 + 0.75 NA intron (NM_001265577, intron 1 of 15) intron (NM_001265577, intron 1 of 15) 6534 NM_001264573 146909 Hs.135094 NM_001080443 ENSG00000186185 KIF18B - kinesin family member 18B protein-coding 114.75-33 chr14 70869192 70869404 + 0.75 NA Intergenic MER41-int|LTR|ERV1 -38161 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 149.5-42 chr17 60912447 60912691 + 0.75 NA intron (NM_001330413, intron 12 of 25) intron (NM_001330413, intron 12 of 25) 234718 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 122-32 chr2 5665943 5666243 + 0.75 NA intron (NR_110580, intron 2 of 4) intron (NR_110580, intron 2 of 4) 25025 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 120.5-42 chr18 36920675 36920943 + 0.75 NA intron (NR_134585, intron 2 of 3) L1MEc|LINE|L1 3005 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 131.75-68 chr6 41222557 41222825 + 0.75 NA Intergenic Intergenic -4744 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 136.5-114 chrX 88762134 88762403 + 0.75 NA Intergenic L1PA14|LINE|L1 15043 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 151.75-71 chr7 53216265 53216590 + 0.75 NA Intergenic Intergenic 180794 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 149.5-27 chr12 93551275 93551611 + 0.75 NA Intergenic Intergenic -18526 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 224-17 chr20 60219109 60219583 + 0.75 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 80854 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 115-16 chr10 132853241 132853498 + 0.75 NA intron (NM_001200049, intron 39 of 57) L1M5|LINE|L1 -67222 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 196.75-42 chr7 39548874 39549227 + 0.75 NA Intergenic AluSz6|SINE|Alu -17354 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 127.75-40 chr17 66406735 66406967 + 0.75 NA intron (NR_110822, intron 3 of 3) intron (NR_110822, intron 3 of 3) 10003 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 115.75-95 chr8 99552354 99552606 + 0.75 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) -15619 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 121.25-17 chr14 38705845 38706032 + 0.75 NA Intergenic Intergenic -176658 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 154-2 chr1 183588112 183588359 + 0.75 NA intron (NM_001190794, intron 1 of 13) intron (NM_001190794, intron 1 of 13) 2369 NM_001190789 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 130.25-68 chr5 7619810 7620222 + 0.75 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 223878 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 191.75-14 chr15 98634302 98634557 + 0.75 NA Intergenic Intergenic -14110 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 113.5-81 chr3 164944943 164945127 + 0.75 NA Intergenic MLT2C2|LTR|ERVL -113555 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 163.25-33 chr17 65805970 65806392 + 0.75 NA intron (NR_126542, intron 1 of 5) L2c|LINE|L2 20270 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 130.5-44 chr2 35224127 35224439 + 0.75 NA Intergenic Intergenic -247122 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 194-6 chr11 9202205 9202514 + 0.75 NA intron (NR_145966, intron 4 of 21) L1MC4|LINE|L1 62967 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 156.25-27 chr17 78090979 78091349 + 0.75 NA intron (NM_018996, intron 14 of 20) intron (NM_018996, intron 14 of 20) 20635 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 188.5-11 chr12 50883040 50883321 + 0.75 NA intron (NM_182559, intron 3 of 4) AluJo|SINE|Alu 40254 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 136.75-39 chr18 6244394 6244693 + 0.75 NA non-coding (NR_158610, exon 5 of 17) non-coding (NR_158610, exon 5 of 17) -12201 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 145.5-61 chr22 34294658 34294949 + 0.75 NA Intergenic Intergenic -371915 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 125-67 chr3 170181080 170181271 + 0.75 NA intron (NM_024947, intron 1 of 14) CpG 558 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 129-82 chr8 134360502 134360833 + 0.75 NA Intergenic Intergenic -237404 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 121.75-30 chr16 73332565 73332851 + 0.75 NA Intergenic Intergenic -54097 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 129.5-59 chr3 12706370 12706591 + 0.75 NA Intergenic LTR16|LTR|ERVL -42279 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 135-20 chr13 99455157 99455374 + 0.75 NA Intergenic L1MB8|LINE|L1 44041 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 145.75-3 chr10 34143377 34143697 + 0.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -370857 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 157-47 chr4 132967164 132967619 + 0.75 NA Intergenic Intergenic 181725 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 113.25-109 chr7 103443303 103443562 + 0.75 NA promoter-TSS (NR_120443) promoter-TSS (NR_120443) -221 NR_120443 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 149.25-28 chr16 86805371 86805827 + 0.75 NA Intergenic L1ME4a|LINE|L1 83508 NR_135182 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 149.5-43 chr17 63148174 63148416 + 0.75 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 182060 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 188.75-26 chr3 15873388 15873853 + 0.75 NA promoter-TSS (NR_030289) promoter-TSS (NR_030289) -151 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 120.25-26 chr14 66165345 66165565 + 0.75 NA Intergenic L1ME3A|LINE|L1 -320916 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 120.25-16 chr11 101789901 101790234 + 0.75 NA Intergenic Intergenic -124943 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 199.5-47 chr6 42678976 42679420 + 0.75 NA intron (NM_015255, intron 41 of 46) intron (NM_015255, intron 41 of 46) 43399 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 150.5-53 chr2 231501352 231501663 + 0.75 NA Intergenic AluSx|SINE|Alu 12832 NR_024079 151477 Hs.375211 NM_173513 ENSG00000181798 LINC00471 C2orf52 long intergenic non-protein coding RNA 471 ncRNA 182.25-11 chr12 110532987 110533259 + 0.75 NA TTS (NM_139283) TTS (NM_139283) 30792 NM_001286534 144715 Hs.97794 NM_152442 ENSG00000151164 RAD9B - RAD9 checkpoint clamp component B protein-coding 157.5-69 chr3 130846428 130846718 + 0.75 NA Intergenic Intergenic -4022 NM_001199182 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 189.5-23 chr19 33919217 33919475 + 0.75 NA Intergenic L1MC3|LINE|L1 122476 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 124.25-7 chr1 200924463 200924648 + 0.75 NA Intergenic AluJb|SINE|Alu -4389 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 215.25-36 chr7 36592572 36593064 + 0.75 NA intron (NM_001177507, intron 11 of 19) intron (NM_001177507, intron 11 of 19) 7302 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 152-6 chr1 194932275 194932632 + 0.75 NA Intergenic Intergenic 1156262 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 163-41 chr5 64113552 64113875 + 0.75 NA Intergenic Intergenic -52130 NM_178532 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 142.25-7 chr10 31400951 31401256 + 0.75 NA intron (NM_001323646, intron 4 of 11) L1ME4c|LINE|L1 -1348 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 197-45 chr7 32453326 32453803 + 0.75 NA Intergenic Intergenic 4930 NR_038454 100130673 Hs.609282 NR_038454 LOC100130673 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo 137.25-29 chr14 64461849 64462072 + 0.75 NA intron (NM_001304508, intron 2 of 2) intron (NM_001304508, intron 2 of 2) -3539 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 133-16 chr12 120072531 120072798 + 0.75 NA exon (NM_207311, exon 6 of 9) exon (NM_207311, exon 6 of 9) 44089 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 218.5-27 chr2 222220660 222221064 + 0.75 NA intron (NM_181457, intron 6 of 7) intron (NM_181457, intron 6 of 7) -77285 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 174.75-27 chr2 34182664 34183051 + 0.75 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 115631 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 217.5-23 chr20 4069124 4069518 + 0.75 NA Intergenic AluJr|SINE|Alu -53763 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 133-53 chr5 58624486 58624788 + 0.75 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 41562 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 196.5-59 chr5 151807731 151808154 + 0.75 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -35766 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 180.5-76 chr6 54741958 54742348 + 0.75 NA Intergenic L1MD|LINE|L1 -104618 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 172.5-4 chr10 55124034 55124556 + 0.75 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -323004 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 223.75-20 chr5 112554247 112554577 + 0.75 NA Intergenic Intergenic -74024 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 131.25-77 chr6 86124242 86124594 + 0.75 NA Intergenic Intergenic -445685 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 134.5-46 chr2 80989642 80990002 + 0.75 NA Intergenic L1MA3|LINE|L1 477124 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 324.75-10 chr4 43793877 43794654 + 0.75 NA Intergenic Intergenic -222596 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 136.75-79 chr5 62884969 62885363 + 0.75 NA Intergenic L1MEc|LINE|L1 306347 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 164.5-85 chr6 126649533 126649903 + 0.75 NA Intergenic L1M4c|LINE|L1 165087 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 119.5-63 chr2 174801828 174802049 + 0.75 NA intron (NM_001025201, intron 11 of 12) intron (NM_001025201, intron 11 of 12) -37466 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 188.75-51 chr8 78302665 78302917 + 0.75 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -213549 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 139.75-23 chr12 107342981 107343305 + 0.75 NA intron (NM_001347944, intron 1 of 14) AluJo|SINE|Alu 22555 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 136.5-28 chr12 107160362 107160677 + 0.75 NA Intergenic LTR33|LTR|ERVL -66970 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 137.5-48 chr18 58546757 58546979 + 0.75 NA intron (NM_052947, intron 4 of 12) intron (NM_052947, intron 4 of 12) -53752 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 187.25-51 chr5 28486875 28487243 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -199394 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 228.25-13 chr17 66313724 66314214 + 0.75 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 11356 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 158.25-30 chr3 12153568 12153937 + 0.75 NA intron (NM_003256, intron 4 of 4) intron (NM_003256, intron 4 of 4) 5160 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 177-58 chr8 78140169 78140661 + 0.75 NA Intergenic Intergenic -375925 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 120-47 chr2 48541195 48541377 + 0.75 NA intron (NM_001198595, intron 2 of 4) AluSz|SINE|Alu 11117 NM_006873 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 157.5-81 chr5 16388390 16388615 + 0.75 NA intron (NR_104625, intron 7 of 8) MLT1B|LTR|ERVL-MaLR 52600 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 116-52 chr4 113437944 113438278 + 0.75 NA Intergenic Intergenic 145272 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 209-36 chr8 84564981 84565322 + 0.75 NA intron (NM_001354308, intron 3 of 9) L3|LINE|CR1 -140776 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 126.75-60 chr3 126703564 126703895 + 0.75 NA promoter-TSS (NM_001320610) promoter-TSS (NM_001320610) -511 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 138-60 chr5 98878200 98878570 + 0.75 NA intron (NM_001364113, intron 23 of 36) intron (NM_001364113, intron 23 of 36) 48149 NM_001270 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 178-20 chr16 6486158 6486589 + 0.75 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -287436 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 160.25-33 chr2 117646597 117646981 + 0.75 NA Intergenic Intergenic -167902 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 150.5-34 chr15 67047041 67047306 + 0.75 NA intron (NR_135686, intron 2 of 5) L1ME3C|LINE|L1 17009 NR_135686 102723493 Hs.419760 NR_135686 LOC102723493 - uncharacterized LOC102723493 ncRNA 122-16 chr12 77821179 77821376 + 0.75 NA Intergenic Intergenic -9617 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 201-26 chr2 143858606 143859094 + 0.75 NA Intergenic Intergenic -78217 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 136.25-6 chr1 210649073 210649314 + 0.75 NA intron (NM_001122834, intron 11 of 11) intron (NM_001122834, intron 11 of 11) 319827 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 146.5-93 chr8 122046699 122047128 + 0.75 NA Intergenic Intergenic -405473 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 118.25-8 chr10 57166440 57166742 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 137968 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 115.75-54 chr22 33157727 33158031 + 0.75 NA Intergenic L1MEc|LINE|L1 49350 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 127-66 chr3 189055222 189055430 + 0.75 NA Intergenic LTR16A2|LTR|ERVL -107687 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 133.5-40 chr16 76780288 76780630 + 0.75 NA Intergenic X6B_LINE|LINE|CR1 -88477 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 127-46 chr2 68144351 68144631 + 0.75 NA intron (NM_138458, intron 3 of 7) intron (NM_138458, intron 3 of 7) 13036 NM_001256476 116143 Hs.631877 NM_138458 ENSG00000243667 WDR92 - WD repeat domain 92 protein-coding 185.75-32 chr2 206121330 206121736 + 0.75 NA 3' UTR (NM_005006, exon 19 of 19) 3' UTR (NM_005006, exon 19 of 19) -4961 NR_033248 100329109 Hs.356055 NR_033248 GCSHP3 - glycine cleavage system protein H pseudogene 3 pseudo 121-28 chr17 81934037 81934351 + 0.75 NA intron (NM_001330523, intron 6 of 6) intron (NM_001330523, intron 6 of 6) 3106 NM_006907 5831 Hs.163451 NM_006907 ENSG00000183010 PYCR1 ARCL2B|ARCL3B|P5C|P5CR|PIG45|PP222|PRO3|PYCR pyrroline-5-carboxylate reductase 1 protein-coding 165-39 chr3 105467077 105467538 + 0.75 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 100398 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 163.5-74 chr5 157229873 157230136 + 0.75 NA intron (NM_005546, intron 7 of 16) L1MC4|LINE|L1 -36119 NM_001291721 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 222-36 chr5 20154252 20154753 + 0.75 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -151049 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 123-59 chr6 149651411 149651662 + 0.75 NA Intergenic Intergenic -2732 NM_001204076 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 130.25-95 chrX 134326851 134327226 + 0.75 NA Intergenic L1MA4A|LINE|L1 -46274 NM_032335 84295 Hs.356501 NM_032335 ENSG00000156531 PHF6 BFLS|BORJ|CENP-31 PHD finger protein 6 protein-coding 198-42 chr6 35896992 35897297 + 0.75 NA intron (NR_034069, intron 2 of 15) L1MB7|LINE|L1 23954 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 136-64 chr7 119079929 119080165 + 0.75 NA Intergenic L1MEc|LINE|L1 827328 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 197-47 chr8 18306977 18307370 + 0.75 NA Intergenic Intergenic -84109 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 129.75-61 chr5 6328798 6329080 + 0.75 NA intron (NR_028351, intron 1 of 1) intron (NR_028351, intron 1 of 1) 8353 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 140.5-43 chr2 72672042 72672322 + 0.75 NA intron (NR_135774, intron 6 of 19) L1MA4|LINE|L1 153851 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 234-37 chr7 90944160 90944565 + 0.75 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 234546 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 168.5-65 chr6 83928129 83928448 + 0.75 NA intron (NM_016230, intron 10 of 15) intron (NM_016230, intron 10 of 15) 68599 NM_016230 51167 Hs.5741 NM_016230 ENSG00000065615 CYB5R4 NCB5OR|cb5/cb5R|dJ676J13.1 cytochrome b5 reductase 4 protein-coding 181.25-52 chr6 37939434 37939808 + 0.75 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 119894 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 112.75-53 chr2 214054244 214054426 + 0.75 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 296268 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 183.25-48 chr6 147098453 147098851 + 0.75 NA intron (NR_034115, intron 4 of 10) intron (NR_034115, intron 4 of 10) -60273 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 148.5-88 chr6 64518563 64518861 + 0.75 NA intron (NM_001292009, intron 26 of 43) THE1C|LTR|ERVL-MaLR 711876 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 129.75-51 chr22 44170085 44170428 + 0.75 NA Intergenic AluJb|SINE|Alu -2700 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 248.75-11 chr3 64939207 64939569 + 0.75 NA intron (NR_038264, intron 4 of 5) MIR|SINE|MIR -251388 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 143.25-31 chr16 77665982 77666206 + 0.75 NA Intergenic Intergenic -56398 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 140-31 chr2 43342259 43342564 + 0.75 NA intron (NR_144316, intron 29 of 36) intron (NR_144316, intron 29 of 36) 115200 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 113.5-39 chr14 83174627 83174822 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 532092 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 117-81 chr7 40758353 40758535 + 0.75 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 221495 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 141-29 chr17 63938149 63938418 + 0.75 NA TTS (NM_000334) TTS (NM_000334) -5952 NM_001039933 974 Hs.89575 NM_000626 ENSG00000007312 CD79B AGM6|B29|IGB CD79b molecule protein-coding 158.75-47 chr4 25493459 25493751 + 0.75 NA Intergenic Intergenic 75741 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 131.5-71 chr5 12839624 12839900 + 0.75 NA Intergenic Intergenic 171903 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 134-61 chr5 83790538 83790819 + 0.75 NA Intergenic HAL1|LINE|L1 -69823 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 142.75-69 chr5 103703734 103704023 + 0.75 NA Intergenic Intergenic -141089 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 132-7 chr10 4724230 4724605 + 0.75 NA Intergenic Intergenic -46347 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 190.75-54 chr8 112303845 112304126 + 0.75 NA intron (NM_052900, intron 50 of 68) MIRb|SINE|MIR -339508 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 130.75-80 chrX 124437798 124438206 + 0.75 NA intron (NM_014253, intron 22 of 30) MamSINE1|SINE|tRNA-RTE 91720 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 180.5-12 chr11 9160159 9160535 + 0.75 NA intron (NR_145966, intron 12 of 21) intron (NR_145966, intron 12 of 21) 65984 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 158.75-38 chr2 221325331 221325715 + 0.75 NA Intergenic Intergenic 246781 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 204.25-17 chr15 70229625 70230068 + 0.75 NA Intergenic L2c|LINE|L2 -131929 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 194.75-43 chr7 54384460 54384782 + 0.75 NA Intergenic L1MEd|LINE|L1 53924 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 137-29 chr15 59106703 59107030 + 0.75 NA intron (NM_004701, intron 1 of 8) intron (NM_004701, intron 1 of 8) 1720 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 230-33 chrX 99600204 99600656 + 0.75 NA Intergenic L1MC4|LINE|L1 809843 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 123.25-46 chr2 142343041 142343221 + 0.75 NA Intergenic Intergenic -211430 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 152.5-5 chr1 195826831 195827260 + 0.75 NA Intergenic Intergenic 261670 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 170.75-12 chr10 71542209 71542536 + 0.75 NA intron (NM_052836, intron 6 of 12) MIR|SINE|MIR -30452 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 114.75-103 chr8 101836443 101836736 + 0.75 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -45620 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 136.5-17 chr11 61168880 61169099 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -7563 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 173-51 chr7 139181158 139181578 + 0.75 NA intron (NM_001144920, intron 16 of 16) intron (NM_001144920, intron 16 of 16) 47590 NM_001318333 79989 Hs.133020 NM_024926 ENSG00000105948 TTC26 DYF13|IFT56|dyf-13 tetratricopeptide repeat domain 26 protein-coding 196.25-38 chr20 11944509 11944914 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 26818 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 136.5-94 chr5 155686494 155686784 + 0.75 NA Intergenic HAL1|LINE|L1 -640118 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 137.25-22 chr12 42498207 42498529 + 0.75 NA intron (NM_153026, intron 1 of 7) AluJr|SINE|Alu -14358 NM_001144883 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 167.5-94 chr9 103560666 103560971 + 0.75 NA Intergenic Intergenic -235785 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 130-56 chr4 65788230 65788487 + 0.75 NA Intergenic Intergenic -117863 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 130.25-26 chr14 44838104 44838404 + 0.75 NA Intergenic Intergenic -39128 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 148.5-39 chr17 58888034 58888311 + 0.75 NA intron (NM_014906, intron 1 of 6) L2a|LINE|L2 132303 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 207.5-15 chr13 71856292 71856681 + 0.75 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 10706 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 138-53 chr4 90374206 90374455 + 0.75 NA intron (NM_207491, intron 3 of 7) HERVL40-int|LTR|ERVL 139299 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 154.75-12 chr12 46259052 46259484 + 0.75 NA intron (NM_001278387, intron 1 of 17) Charlie19a|DNA|hAT-Charlie 7248 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 148.75 chr1 159204000 159204289 + 0.75 NA promoter-TSS (NM_002036) promoter-TSS (NM_002036) -731 NM_001122951 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 176.75-15 chr15 54338481 54338909 + 0.75 NA intron (NM_001329919, intron 16 of 31) MIRc|SINE|MIR 326047 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 168.75-49 chr5 132316278 132316634 + 0.75 NA intron (NM_003059, intron 3 of 9) intron (NM_003059, intron 3 of 9) 22062 NM_003059 6583 Hs.310591 NM_003059 ENSG00000197208 SLC22A4 DFNB60|OCTN1 solute carrier family 22 member 4 protein-coding 154.5-32 chr15 64621036 64621289 + 0.75 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 82119 NM_001301302 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 156-46 chr3 136627347 136627783 + 0.75 NA intron (NM_005862, intron 2 of 33) L1ME3G|LINE|L1 124813 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 141.75-40 chr2 44771594 44771827 + 0.75 NA intron (NM_024766, intron 10 of 10) intron (NM_024766, intron 10 of 10) 167178 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 144-30 chr2 380406 380772 + 0.75 NA Intergenic L1MA9|LINE|L1 64305 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 116.25-81 chr7 22734576 22734826 + 0.75 NA Intergenic LTR38A1|LTR|ERV1 -7081 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 137-47 chr3 67473468 67473692 + 0.75 NA intron (NM_001177599, intron 9 of 10) intron (NM_001177599, intron 9 of 10) 181034 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 156.75-18 chr12 823393 823632 + 0.75 NA intron (NM_001184985, intron 2 of 27) L1MB5|LINE|L1 70589 NM_001184985 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 154.75-36 chr20 13172529 13172852 + 0.75 NA Intergenic HAL1ME|LINE|L1 -48584 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 114.25-30 chr14 42448992 42449258 + 0.75 NA Intergenic L1ME3|LINE|L1 842269 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 120.5-68 chr3 128345327 128345558 + 0.75 NA intron (NM_021937, intron 5 of 6) intron (NM_021937, intron 5 of 6) -118152 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 140.25-15 chr12 31038262 31038612 + 0.75 NA intron (NR_038927, intron 2 of 2) intron (NR_038927, intron 2 of 2) 35410 NR_038927 100506660 Hs.586774 NR_038927 ENSG00000245614 DDX11-AS1 CONCR|SCAT4 DDX11 antisense RNA 1 ncRNA 118.5-81 chr4 153220265 153220563 + 0.75 NA intron (NM_001302693, intron 1 of 2) MLT1N2|LTR|ERVL-MaLR 15971 NM_001351057 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 148.75-31 chr2 38262284 38262546 + 0.75 NA Intergenic Intergenic 114115 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 118.75-10 chr10 67609471 67609679 + 0.75 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 56085 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 175-43 chr4 42133133 42133434 + 0.75 NA intron (NM_207406, intron 3 of 5) intron (NM_207406, intron 3 of 5) 19372 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 132.5-35 chr16 2504781 2505095 + 0.75 NA 3' UTR (NM_001199107, exon 8 of 8) 3' UTR (NM_001199107, exon 8 of 8) -8788 NM_001198569 527 Hs.389107 NM_001694 ENSG00000185883 ATP6V0C ATP6C|ATP6L|ATPL|VATL|VPPC|Vma3 ATPase H+ transporting V0 subunit c protein-coding 200.25-10 chr10 70739409 70739869 + 0.75 NA intron (NM_080722, intron 11 of 21) intron (NM_080722, intron 11 of 21) 42934 NR_134532 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 129.5-41 chr2 38255017 38255254 + 0.75 NA Intergenic AluJb|SINE|Alu 121395 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 114 chr1 65944266 65944458 + 0.75 NA intron (NM_002600, intron 3 of 16) L1MA8|LINE|L1 31117 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 122.25-34 chr17 59285781 59285953 + 0.75 NA Intergenic MIRb|SINE|MIR -45788 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 149.5-81 chr5 24429568 24429821 + 0.75 NA Intergenic MER39|LTR|ERV1 215284 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 129-83 chr8 138905782 138906068 + 0.75 NA intron (NM_152888, intron 1 of 64) L2c|LINE|L2 8116 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 142.75-29 chr15 56896088 56896409 + 0.75 NA intron (NR_015419, intron 2 of 3) MLT1N2|LTR|ERVL-MaLR -21842 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 170.75-43 chr2 169686759 169687095 + 0.75 NA intron (NM_001085447, intron 1 of 8) THE1A|LTR|ERVL-MaLR 7478 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 121-27 chr17 68777503 68777808 + 0.75 NA Intergenic Intergenic 149501 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 175.5-79 chr8 119022301 119022572 + 0.75 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -44811 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 123-52 chr6 52306034 52306265 + 0.75 NA Intergenic Intergenic -21407 NR_158966 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 123.75-11 chr10 18745491 18745750 + 0.75 NA Intergenic Intergenic 86189 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 128.75-93 chr9 68987736 68987964 + 0.75 NA intron (NM_001278253, intron 13 of 13) THE1A|LTR|ERVL-MaLR -12009 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 114.75-112 chrX 22412858 22413238 + 0.75 NA intron (NR_073010, intron 4 of 11) intron (NR_073010, intron 4 of 11) 140135 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 135.75-85 chr6 41833243 41833644 + 0.75 NA intron (NM_001286554, intron 1 of 5) intron (NM_001286554, intron 1 of 5) 38194 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 190-53 chr8 123797945 123798476 + 0.75 NA exon (NM_001317917, exon 16 of 24) exon (NM_001317917, exon 16 of 24) 29771 NM_144963 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 115.5-66 chr4 73600399 73600778 + 0.75 NA intron (NM_001270391, intron 2 of 9) L2a|LINE|L2 19848 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 167.25-11 chr1 232039633 232040015 + 0.75 NA non-coding (NR_028393, exon 16 of 16) non-coding (NR_028393, exon 16 of 16) 113990 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 154.5-73 chr8 100819320 100819628 + 0.75 NA Intergenic Intergenic -97386 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 136.5-96 chr6 24547760 24548011 + 0.75 NA intron (NM_001168377, intron 18 of 18) intron (NM_001168377, intron 18 of 18) 35342 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 125.75-45 chr3 7572102 7572478 + 0.75 NA intron (NM_000844, intron 7 of 9) MER5B|DNA|hAT-Charlie -37006 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 126-11 chr10 84027253 84027568 + 0.75 NA Intergenic L1ME1|LINE|L1 -112099 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 167-11 chr14 68149210 68149627 + 0.75 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 325826 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 134-26 chr14 75747753 75748139 + 0.75 NA intron (NM_015072, intron 17 of 31) L1MEc|LINE|L1 86700 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 135.75-109 chr8 131213746 131214075 + 0.75 NA Intergenic L2|LINE|L2 -173001 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 154.75-29 chr2 101542112 101542380 + 0.75 NA Intergenic L1ME1|LINE|L1 -67134 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 135.25-8 chr10 57104672 57105004 + 0.75 NA Intergenic Intergenic 199721 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 200.5-43 chr3 59122193 59122549 + 0.75 NA Intergenic LTR40a|LTR|ERVL -72339 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 114.5-39 chr18 2119004 2119283 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 452362 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 173-6 chr10 82099969 82100324 + 0.75 NA intron (NR_163253, intron 2 of 10) L1MEf|LINE|L1 132774 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 207.75-17 chr16 75343555 75343932 + 0.75 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) -75736 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 125.5-75 chr3 17453902 17454199 + 0.75 NA intron (NM_014744, intron 3 of 21) L1M1|LINE|L1 245970 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 121.75-4 chr1 175418843 175419175 + 0.75 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -226022 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 114.5-112 chr9 74489035 74489265 + 0.75 NA intron (NR_125791, intron 1 of 4) L1MEg|LINE|L1 -8185 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 183-63 chr7 33271072 33271451 + 0.75 NA intron (NM_198428, intron 7 of 22) L1PREC2|LINE|L1 141697 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 123.5-52 chr2 103614598 103614791 + 0.75 NA Intergenic Intergenic -630265 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 142.5-72 chr4 145485765 145486013 + 0.75 NA intron (NM_001354817, intron 1 of 6) MIR|SINE|MIR 3084 NM_001003688 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 126.5-37 chr15 50715198 50715491 + 0.75 NA intron (NM_032802, intron 14 of 14) intron (NM_032802, intron 14 of 14) -28547 NM_001301212 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 178.5-4 chr1 225765065 225765506 + 0.75 NA Intergenic Intergenic -12528 NM_003133 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 148-30 chr17 43347096 43347346 + 0.75 NA Intergenic HERVK13-int|LTR|ERVK 41677 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 132.75-49 chr17 60934071 60934281 + 0.75 NA intron (NM_001330413, intron 13 of 25) intron (NM_001330413, intron 13 of 25) 256325 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 147.25 chr1 162541436 162541698 + 0.75 NA Intergenic Intergenic -19873 NM_001324117 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 182-39 chr5 66153374 66153662 + 0.75 NA exon (NM_001077199, exon 2 of 12) exon (NM_001077199, exon 2 of 12) 8683 NM_139168 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 193.75-44 chr8 42115290 42115635 + 0.75 NA Intergenic Intergenic -37484 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 176.75-33 chr3 130677634 130677988 + 0.75 NA 3' UTR (NM_001102608, exon 36 of 36) 3' UTR (NM_001102608, exon 36 of 36) 69018 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 166.5-15 chr10 20300856 20301230 + 0.75 NA Intergenic Intergenic -250927 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 147.5-71 chr6 38188409 38188729 + 0.75 NA intron (NM_052893, intron 11 of 11) intron (NM_052893, intron 11 of 11) -293027 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 127.5-88 chr4 34433106 34433305 + 0.75 NA Intergenic (CTTTTCT)n|Simple_repeat|Simple_repeat -163458 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 142.5-29 chr15 83867581 83867891 + 0.75 NA intron (NM_207517, intron 8 of 29) intron (NM_207517, intron 8 of 29) -212451 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 149-44 chr5 19951138 19951499 + 0.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 36882 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 116.5-27 chr12 100768822 100769008 + 0.75 NA Intergenic Intergenic -25861 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 127.5-103 chr6 14271842 14272029 + 0.75 NA Intergenic LTR8B|LTR|ERV1 13519 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 121.5-8 chr1 183864671 183864940 + 0.75 NA intron (NM_001297669, intron 4 of 18) intron (NM_001297669, intron 4 of 18) 59685 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 129.25-63 chr5 176357438 176357652 + 0.75 NA intron (NM_001287336, intron 1 of 6) MIRb|SINE|MIR 4219 NM_020444 57179 Hs.743257 NM_020444 ENSG00000122203 KIAA1191 p33MONOX|p60MONOX KIAA1191 protein-coding 128-46 chr4 32068658 32068828 + 0.75 NA intron (NR_125936, intron 1 of 2) L1PA16|LINE|L1 -46321 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 147-47 chr20 36524403 36524610 + 0.75 NA intron (NM_001042486, intron 5 of 6) intron (NM_001042486, intron 5 of 6) -17013 NM_006097 10398 Hs.504687 NM_006097 ENSG00000101335 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin light chain 9 protein-coding 114.5-97 chr7 30282613 30282895 + 0.75 NA intron (NR_136267, intron 1 of 3) intron (NR_136267, intron 1 of 3) -1843 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 125.5-39 chr14 48125772 48125984 + 0.75 NA Intergenic Intergenic -330864 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 128.5-56 chr3 42226604 42226825 + 0.75 NA TTS (NR_146089) TTS (NR_146089) 37233 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 179.5 chr1 10845240 10845681 + 0.75 NA Intergenic L1MC3|LINE|L1 -48814 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 167.25-2 chr1 49005266 49005524 + 0.75 NA intron (NM_001323575, intron 5 of 12) MER44B|DNA|TcMar-Tigger -228426 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 139.75-33 chr16 2691986 2692347 + 0.75 NA intron (NM_018992, intron 1 of 5) intron (NM_018992, intron 1 of 5) 9643 NM_018992 54442 Hs.61960 NM_018992 ENSG00000167977 KCTD5 - potassium channel tetramerization domain containing 5 protein-coding 123.5-3 chr1 44611925 44612208 + 0.75 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 58990 NR_145816 109623472 NR_145816 SNORD145 - small nucleolar RNA, C/D box 145 snoRNA 164.5-94 chr8 17087515 17087820 + 0.75 NA intron (NR_146233, intron 7 of 15) MIR|SINE|MIR 60429 NM_001349810 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 155-43 chr5 27135451 27135689 + 0.75 NA Intergenic Intergenic -96984 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 171.5-12 chr11 32760270 32760611 + 0.75 NA intron (NM_001008391, intron 1 of 17) intron (NM_001008391, intron 1 of 17) 34218 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 158-61 chr7 83585616 83585853 + 0.75 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 55697 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 191-29 chr21 18267453 18267781 + 0.75 NA TTS (NM_024944) TTS (NM_024944) 21742 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 126.5-67 chr20 45559249 45559666 + 0.75 NA intron (NM_130896, intron 2 of 5) intron (NM_130896, intron 2 of 5) -12056 NM_001302861 57119 Hs.121084 NM_020398 ENSG00000101448 EPPIN CT71|CT72|SPINLW1|WAP7|WFDC7|dJ461P17.2 epididymal peptidase inhibitor protein-coding 165.25-53 chr7 42764240 42764602 + 0.75 NA Intergenic Intergenic -57974 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 125.75-39 chr2 184863811 184864038 + 0.75 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 265395 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 119.25-54 chr2 159895666 159895901 + 0.75 NA intron (NM_002349, intron 2 of 34) intron (NM_002349, intron 2 of 34) 8973 NM_001198760 100526664 Hs.153563 NM_001198759 ENSG00000248672 LY75-CD302 CD205|CLEC13B|DEC-205|LY75|Ly-75|gp200-MR6 LY75-CD302 readthrough protein-coding 151.75-65 chr5 104773365 104773568 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -326008 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 198-10 chr11 130772736 130773095 + 0.75 NA Intergenic Intergenic 89195 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 118.5-2 chr1 24024600 24024925 + 0.75 NA Intergenic Intergenic -44299 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 164.25-21 chr16 89654422 89654968 + 0.75 NA intron (NR_046418, intron 1 of 6) AluY|SINE|Alu 3013 NM_002768 5119 Hs.589427 NM_002768 ENSG00000131165 CHMP1A CHMP1|PCH8|PCOLN3|PRSM1|VPS46-1|VPS46A charged multivesicular body protein 1A protein-coding 163.75-18 chr14 32847971 32848404 + 0.75 NA Intergenic Intergenic -90692 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 119.75-49 chr2 157039226 157039526 + 0.75 NA Intergenic Intergenic -218329 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 137-22 chr14 67463739 67463952 + 0.75 NA Intergenic MIRb|SINE|MIR -21915 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 192-42 chr5 59793483 59793769 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -24778 NM_001364601 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 131.75-10 chr10 116365042 116365241 + 0.75 NA intron (NM_198515, intron 7 of 8) X6B_LINE|LINE|CR1 40693 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 204.75-42 chr7 18231804 18232250 + 0.75 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -58065 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 176.75-13 chr14 68037248 68037687 + 0.75 NA intron (NM_133509, intron 7 of 10) AluSc5|SINE|Alu 213875 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 153.5-55 chr21 39720671 39721054 + 0.75 NA Intergenic L1MC3|LINE|L1 -24545 NM_001080444 150084 Hs.422120 NM_001080444 ENSG00000183067 IGSF5 GSF5|JAM4 immunoglobulin superfamily member 5 protein-coding 320.25-10 chr4 65051424 65052004 + 0.75 NA Intergenic Intergenic -47214 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 128.75-65 chr3 133927920 133928134 + 0.75 NA TTS (NR_161373) TTS (NR_161373) 1785 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 156.5-40 chr2 233870077 233870435 + 0.75 NA Intergenic L1MD|LINE|L1 -1847 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 159.25-60 chr6 70982944 70983364 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -26094 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 169.75-10 chr10 127080024 127080509 + 0.75 NA intron (NM_001290223, intron 23 of 51) intron (NM_001290223, intron 23 of 51) 116325 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 152.75-26 chr18 5113947 5114218 + 0.75 NA Intergenic L1MA3|LINE|L1 32900 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 197-11 chr12 86667014 86667555 + 0.75 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 77865 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 119.25-18 chr12 62863299 62863485 + 0.75 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 71758 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 165.5-13 chr11 91203256 91203615 + 0.75 NA Intergenic L1MEd|LINE|L1 -334233 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 148.75-72 chr8 125476400 125476682 + 0.75 NA Intergenic MIRb|SINE|MIR 44332 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 178.75-47 chr5 96373680 96373996 + 0.75 NA intron (NR_130776, intron 3 of 4) AluJo|SINE|Alu 58321 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 128.75-52 chr22 30120432 30120661 + 0.75 NA intron (NM_001329457, intron 9 of 11) intron (NM_001329457, intron 9 of 11) 40082 NM_001329458 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 165.75-7 chr10 89840707 89841084 + 0.75 NA TTS (NR_038382) TTS (NR_038382) 11402 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 172.5-9 chr11 133839941 133840308 + 0.75 NA TTS (NM_174927) TTS (NM_174927) 5389 NM_001291992 219938 Hs.97541 NM_174927 ENSG00000166118 SPATA19 CT132|SPAS1|spergen1 spermatogenesis associated 19 protein-coding 191.5-29 chr18 2995160 2995513 + 0.75 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 16611 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 203-22 chr20 59655125 59655636 + 0.75 NA intron (NM_001281507, intron 1 of 12) L1MB8|LINE|L1 -21281 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 323.75-8 chr9 119960919 119961469 + 0.75 NA Intergenic L1MA8|LINE|L1 26134 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 140.75-2 chr1 76034948 76035227 + 0.75 NA Intergenic Tigger15a|DNA|TcMar-Tigger 23763 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 130-41 chr20 49796551 49796916 + 0.75 NA Intergenic MIR|SINE|MIR -15980 NM_001260491 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 155.75-41 chr3 191694911 191695184 + 0.75 NA Intergenic L2b|LINE|L2 233884 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 166.5-106 chr9 85118046 85118305 + 0.75 NA Intergenic Intergenic 412274 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 135.25-62 chr3 102333085 102333353 + 0.75 NA Intergenic Intergenic -101796 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 189.25-11 chr13 82022522 82022866 + 0.75 NA Intergenic L1MC1|LINE|L1 -795711 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 123.75-106 chr8 137770595 137770819 + 0.75 NA Intergenic L1M2|LINE|L1 312838 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 188-29 chr5 13193812 13194150 + 0.75 NA Intergenic Intergenic -161095 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 172.25-20 chr14 70613189 70613540 + 0.75 NA intron (NR_110071, intron 2 of 2) intron (NR_110071, intron 2 of 2) -12674 NM_001284210 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 146.75-37 chr4 75712216 75712473 + 0.75 NA Intergenic Intergenic -12178 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 201.5-46 chr5 33759612 33760005 + 0.75 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 132182 NM_030955 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 121.75-13 chr11 78324164 78324379 + 0.75 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 17609 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 142.25-3 chr1 70581300 70581548 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -125029 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 140.25-9 chr10 91006818 91007146 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy -26184 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 191.5-20 chr12 130961862 130962264 + 0.75 NA intron (NM_198827, intron 2 of 24) intron (NM_198827, intron 2 of 24) 8156 NM_198827 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 125-64 chr3 120611155 120611390 + 0.75 NA Intergenic Intergenic 14936 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 137-42 chr20 45796388 45796570 + 0.75 NA intron (NM_052951, intron 4 of 12) intron (NM_052951, intron 4 of 12) 4525 NM_052951 116092 Hs.472852 NM_052951 ENSG00000101457 DNTTIP1 C20orf167|Tdif1|dJ447F3.4 deoxynucleotidyltransferase terminal interacting protein 1 protein-coding 163.5-83 chr7 17555582 17555854 + 0.75 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 3191 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 161-69 chr8 138443012 138443272 + 0.75 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 54119 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 152.75-60 chr8 66113661 66113949 + 0.75 NA Intergenic CpG -13324 NM_184087 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 121.25-2 chr1 84509573 84509827 + 0.75 NA intron (NM_001310156, intron 1 of 13) AluSx|SINE|Alu -3119 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 167-10 chr14 37942220 37942442 + 0.75 NA Intergenic L1MC3|LINE|L1 -40207 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 133.25-45 chr2 125714719 125714993 + 0.75 NA Intergenic Intergenic 403129 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 126.75-71 chr4 150289565 150289904 + 0.75 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 211289 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 127-10 chr10 12430422 12430720 + 0.75 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 41589 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 196.25-16 chr14 59039629 59040030 + 0.75 NA Intergenic Intergenic -148838 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 121-60 chr6 35674340 35674501 + 0.75 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) -9631 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 181.75-6 chr10 45042993 45043335 + 0.75 NA Intergenic L1MEf|LINE|L1 42241 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 120-12 chr1 164679737 164679908 + 0.75 NA intron (NM_001204963, intron 2 of 8) MIRc|SINE|MIR 94819 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 138-65 chr6 62215861 62216169 + 0.75 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 70210 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 180.5-24 chr13 110278236 110278584 + 0.75 NA intron (NM_001845, intron 1 of 51) intron (NM_001845, intron 1 of 51) 28747 NM_001303110 1282 Hs.17441 NM_001845 ENSG00000187498 COL4A1 BSVD|BSVD1|RATOR collagen type IV alpha 1 chain protein-coding 130.5-8 chr1 171149636 171149915 + 0.75 NA intron (NR_002601, intron 4 of 6) intron (NR_002601, intron 4 of 6) 12035 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing dimethylaniline monoxygenase 6, pseudogene pseudo 131-27 chr2 10737639 10737986 + 0.75 NA intron (NM_001039362, intron 3 of 13) AluSx1|SINE|Alu 16182 NM_144583 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 151.5-84 chr8 87766718 87766988 + 0.75 NA Intergenic L1MA7|LINE|L1 107162 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 173.5-96 chr7 44538473 44538971 + 0.75 NA intron (NM_001300967, intron 2 of 6) intron (NM_001300967, intron 2 of 6) 2608 NM_013389 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 183.75-26 chr17 40136998 40137415 + 0.75 NA TTS (NM_001365920) TTS (NM_001365920) -3331 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 CASC3 exon junction complex subunit protein-coding 171.25-21 chr17 12951811 12952057 + 0.75 NA intron (NM_001321164, intron 12 of 20) intron (NM_001321164, intron 12 of 20) -34592 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 167.75-35 chr2 182383050 182383512 + 0.75 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 43767 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 213.25-18 chr19 48681163 48681605 + 0.75 NA non-coding (NR_004401, exon 5 of 5) non-coding (NR_004401, exon 5 of 5) -8303 NM_145807 126147 Hs.326217 NM_145807 ENSG00000142233 NTN5 - netrin 5 protein-coding 123.25-18 chr12 61611472 61611726 + 0.75 NA Intergenic Intergenic 581240 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 226.25-6 chr11 121871829 121872264 + 0.75 NA Intergenic MIR|SINE|MIR 227798 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 118.5-12 chr1 191905895 191906100 + 0.75 NA Intergenic Intergenic -252465 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 174-21 chr17 52093675 52094023 + 0.75 NA intron (NM_001082533, intron 2 of 9) MIRb|SINE|MIR 64865 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 145.75-73 chr8 115628876 115629136 + 0.75 NA intron (NM_014112, intron 1 of 6) MER103C|DNA|hAT-Charlie 39007 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 164-23 chr16 69137576 69137907 + 0.75 NA intron (NM_001318391, intron 3 of 16) (GT)n|Simple_repeat|Simple_repeat 5092 NM_032830 84916 Hs.461113 NM_032830 ENSG00000141076 UTP4 CIRH1A|CIRHIN|NAIC|TEX292 UTP4 small subunit processome component protein-coding 162.25-8 chr13 77454194 77454472 + 0.75 NA Intergenic Intergenic -81341 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 144-28 chr15 75483209 75483473 + 0.75 NA intron (NM_002833, intron 8 of 12) L1MB7|LINE|L1 -27526 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 141.25-19 chr11 116679752 116680134 + 0.75 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 40521 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 120-19 chr11 13686190 13686397 + 0.75 NA intron (NM_032228, intron 1 of 11) intron (NM_032228, intron 1 of 11) 17625 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 152-48 chr4 59121308 59121578 + 0.75 NA Intergenic Intergenic 107870 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 120-58 chr3 24782452 24782703 + 0.75 NA Intergenic Intergenic -46746 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 150.75-77 chr9 69411968 69412265 + 0.75 NA Intergenic CpG 82791 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 157-19 chr14 43606801 43607127 + 0.75 NA Intergenic Intergenic 900319 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 158.5-28 chr12 75925276 75925574 + 0.75 NA Intergenic LTR45B|LTR|ERV1 106351 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 156.5-11 chr12 6743027 6743276 + 0.75 NA Intergenic Intergenic 9765 NM_005439 8079 Hs.524214 NM_005439 ENSG00000089693 MLF2 NTN4 myeloid leukemia factor 2 protein-coding 247.25-9 chr18 7396262 7396855 + 0.75 NA Intergenic Intergenic 64448 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 118.5-121 chr9 72791418 72791753 + 0.75 NA intron (NM_138691, intron 15 of 23) intron (NM_138691, intron 15 of 23) 82524 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 189-22 chr16 35467901 35468218 + 0.75 NA Intergenic Intergenic 12537 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 137.5-13 chr10 78906781 78907003 + 0.75 NA Intergenic L3|LINE|CR1 160556 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 252.25-26 chr9 110513220 110513690 + 0.75 NA intron (NM_153366, intron 4 of 47) intron (NM_153366, intron 4 of 47) 66286 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 145-14 chr12 106669378 106669667 + 0.75 NA intron (NM_001206691, intron 4 of 17) intron (NM_001206691, intron 4 of 17) 15178 NR_038912 100505978 Hs.662583 NR_038912 ENSG00000257711 LOC100505978 - uncharacterized LOC100505978 ncRNA 133.5-68 chr3 102726927 102727246 + 0.75 NA Intergenic MIR|SINE|MIR 292071 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 144-40 chr21 26734130 26734364 + 0.75 NA Intergenic MamTip2|DNA|hAT-Tip100 111162 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 133.5-25 chr14 43145830 43146152 + 0.75 NA Intergenic Intergenic 1361292 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 121.75-28 chr16 3316410 3316631 + 0.75 NA intron (NM_001302109, intron 5 of 6) intron (NM_001302109, intron 5 of 6) 10308 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 173-11 chr11 108011213 108011522 + 0.75 NA intron (NM_003478, intron 1 of 18) Kanga2_a|DNA|TcMar-Tc2 2469 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 222.75-13 chr14 72697324 72697804 + 0.75 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 180744 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 118.75-11 chr10 78858867 78859138 + 0.75 NA Intergenic L1MB8|LINE|L1 208446 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 185.75-25 chr16 73808294 73808632 + 0.75 NA Intergenic Intergenic 407058 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 168.5-42 chr2 89799133 89799615 + 0.75 NA Intergenic Intergenic -161467 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 226.75-6 chr10 77714030 77714581 + 0.75 NA Intergenic Intergenic -76497 NM_001271521 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 125.75-59 chr5 59234566 59234771 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 41447 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 182.5-28 chr2 36606935 36607266 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -8932 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 161-35 chr18 46569600 46569861 + 0.75 NA intron (NM_144612, intron 15 of 39) intron (NM_144612, intron 15 of 39) -10418 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 206.25-20 chr3 39298677 39299012 + 0.75 NA Intergenic L1M2|LINE|L1 -17109 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 116.75-79 chr8 80733028 80733342 + 0.75 NA intron (NM_001033723, intron 2 of 8) L1MEg|LINE|L1 141283 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 116.75-17 chr12 64536186 64536395 + 0.75 NA Intergenic AluY|SINE|Alu -74205 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 204-40 chr8 123137742 123138103 + 0.75 NA intron (NM_001363149, intron 17 of 21) intron (NM_001363149, intron 17 of 21) -41125 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 112.75 chr1 27299135 27299323 + 0.75 NA intron (NM_001276252, intron 12 of 15) L2c|LINE|L2 -22916 NM_032125 84065 Hs.469171 NM_032125 ENSG00000186501 TMEM222 C1orf160 transmembrane protein 222 protein-coding 150.25-58 chr4 112216471 112216725 + 0.75 NA Intergenic Intergenic -15189 NM_001128426 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 119.5-123 chr8 88766137 88766374 + 0.75 NA Intergenic MIR|SINE|MIR -438772 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 134.25-20 chr14 77659266 77659568 + 0.75 NA Intergenic AluJr|SINE|Alu -42650 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 161.25-32 chr19 56383529 56383821 + 0.75 NA 3' UTR (NM_144690, exon 5 of 5) 3' UTR (NM_144690, exon 5 of 5) 9859 NM_001320371 147948 Hs.244391 NM_144690 ENSG00000018869 ZNF582 - zinc finger protein 582 protein-coding 121.25-44 chr3 81511536 81511746 + 0.75 NA intron (NM_000158, intron 14 of 15) L1PA16|LINE|L1 250004 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 117.25-23 chr11 113527999 113528175 + 0.75 NA Intergenic L1ME4b|LINE|L1 -52689 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 121-13 chr10 66573311 66573589 + 0.75 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -352586 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 153.75-48 chr21 20066026 20066316 + 0.75 NA Intergenic Intergenic -166416 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 141.25-79 chr9 128842754 128843100 + 0.75 NA 5' UTR (NM_001352999, exon 3 of 13) 5' UTR (NM_001352999, exon 3 of 13) 2823 NM_001352993 883 Hs.495250 NM_004059 ENSG00000171097 KYAT1 CCBL1|GTK|KAT1|KATI kynurenine aminotransferase 1 protein-coding 131.25-53 chr20 55526560 55526842 + 0.75 NA Intergenic Intergenic -99504 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 122.25-95 chr8 118996180 118996484 + 0.75 NA intron (NM_001324095, intron 1 of 7) L1MB1|LINE|L1 44069 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 115.25-33 chr14 49335792 49336071 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 250449 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 143-56 chr5 40304647 40304916 + 0.75 NA Intergenic L2b|LINE|L2 252490 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 112.75-81 chr7 25107577 25107831 + 0.75 NA Intergenic GA-rich|Low_complexity|Low_complexity 17657 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 125.25-62 chr5 16908577 16908815 + 0.75 NA intron (NM_012334, intron 1 of 40) (ATAGAT)n|Simple_repeat|Simple_repeat 27592 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 155.75-4 chr1 106584645 106584925 + 0.75 NA Intergenic Intergenic -233454 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 121.5-45 chr16 86252510 86252781 + 0.75 NA intron (NR_104139, intron 3 of 5) MLT1C|LTR|ERVL-MaLR 33602 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 242-21 chr2 23315582 23315998 + 0.75 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -69389 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 148.5-92 chr6 129302473 129302842 + 0.75 NA intron (NM_000426, intron 22 of 64) L1ME2|LINE|L1 407520 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 174.75-35 chr3 165938198 165938544 + 0.75 NA Intergenic Intergenic -100948 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 141.5-112 chr8 107322988 107323251 + 0.75 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 13396 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 199.25-3 chr1 168932432 168932928 + 0.75 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 145739 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 183.5-4 chr1 71317296 71317765 + 0.75 NA Intergenic L1MC1|LINE|L1 236206 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 168-29 chr15 91045052 91045517 + 0.75 NA Intergenic L2b|LINE|L2 22662 NR_110104 101926911 Hs.459366 NR_110104 ENSG00000214432 VPS33B-DT - VPS33B divergent transcript ncRNA 144.75-76 chr7 3660892 3661154 + 0.75 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 359771 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 167.75-69 chr9 90839431 90839703 + 0.75 NA intron (NM_001174167, intron 1 of 13) intron (NM_001174167, intron 1 of 13) 12147 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 140.5-25 chr14 48528464 48528774 + 0.75 NA Intergenic Intergenic -733605 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 134.5-98 chr8 127062656 127063034 + 0.75 NA Intergenic MIR|SINE|MIR -17029 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 170.75-22 chr14 56365303 56365792 + 0.75 NA Intergenic Intergenic -148784 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 116.75-21 chr13 20537822 20538013 + 0.75 NA Intergenic L1MEc|LINE|L1 -12044 NM_001363647 51084 Hs.370703 NM_015974 ENSG00000165475 CRYL1 GDH|HEL30|gul3DH|lambda-CRY crystallin lambda 1 protein-coding 172.5-15 chr14 35902894 35903261 + 0.75 NA Intergenic Charlie9|DNA|hAT-Charlie 76739 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 112.75-2 chr1 47001723 47001933 + 0.75 NA intron (NM_001320289, intron 1 of 11) intron (NM_001320289, intron 1 of 11) -2358 NM_001320290 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 118.25-51 chr2 223884765 223885062 + 0.75 NA intron (NM_020830, intron 8 of 11) AluSg|SINE|Alu -47331 NR_110905 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 210.25-2 chr1 36452286 36452754 + 0.75 NA Intergenic Intergenic -2035 NM_001330493 127700 Hs.202207 NM_145047 ENSG00000116885 OSCP1 C1orf102|NOR1 organic solute carrier partner 1 protein-coding 168-65 chr8 120339465 120339781 + 0.75 NA intron (NM_021110, intron 42 of 47) MIR3|SINE|MIR 105527 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 159.75-61 chr8 47103791 47104186 + 0.75 NA Intergenic L1MEc|LINE|L1 -85319 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 139.5-50 chr20 9236982 9237368 + 0.75 NA intron (NM_182797, intron 1 of 35) L1ME3|LINE|L1 19785 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 158.75-6 chr10 54819006 54819336 + 0.75 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -17880 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 132.5-5 chr1 208754869 208755045 + 0.75 NA Intergenic Intergenic 26269 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 151.5-54 chr3 152893919 152894150 + 0.75 NA Intergenic LTR16B|LTR|ERVL 58903 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 116.5-48 chr17 71384763 71385074 + 0.75 NA Intergenic L1PA4|LINE|L1 -182739 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 149.25-31 chr18 29376905 29377124 + 0.75 NA Intergenic AluSz6|SINE|Alu -921896 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 140.5-48 chr2 135587261 135587584 + 0.75 NA intron (NM_001282798, intron 1 of 25) intron (NM_001282798, intron 1 of 25) 1070 NM_001282798 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 146.25-64 chr6 130954378 130954652 + 0.75 NA intron (NR_146620, intron 1 of 12) MIRb|SINE|MIR 15968 NM_001350306 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 134.5-87 chr7 1163088 1163489 + 0.75 NA intron (NR_110067, intron 2 of 3) Tigger17a|DNA|TcMar-Tigger 2503 NR_110070 101927021 Hs.529566 NR_110065 LOC101927021 - uncharacterized LOC101927021 ncRNA 121.25-15 chr12 6881340 6881613 + 0.75 NA intron (NR_135083, intron 2 of 3) AluJo|SINE|Alu -2505 NR_002803 283345 Hs.720698 NR_002803 ENSG00000240370 RPL13P5 RPL13-2|RPL13L|RPL13_4_1199|RRPL13L ribosomal protein L13 pseudogene 5 pseudo 155.75-29 chr20 41079816 41080107 + 0.75 NA intron (NM_003286, intron 5 of 20) intron (NM_003286, intron 5 of 20) 51139 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 122.25-72 chr5 12338052 12338264 + 0.75 NA Intergenic LTR16A1|LTR|ERVL -236699 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 135.75-54 chr2 193818341 193818602 + 0.75 NA Intergenic Intergenic -525798 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 114.25-23 chr12 12165041 12165288 + 0.75 NA exon (NM_002336, exon 8 of 23).2 exon (NM_002336, exon 8 of 23).2 53212 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 130-29 chr18 12843514 12843760 + 0.75 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) -2675 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 231-20 chr2 238887700 238888283 + 0.75 NA TTS (NM_057179) TTS (NM_057179) 38278 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 266.75-13 chrX 93684404 93684841 + 0.75 NA intron (NM_001171110, intron 3 of 4) L1ME3G|LINE|L1 10416 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 122.5-9 chr10 13629121 13629387 + 0.75 NA intron (NM_003675, intron 9 of 9) L3|LINE|CR1 42289 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 165.25-43 chr4 160347643 160347976 + 0.75 NA Intergenic Intergenic -570025 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 149.5-97 chr6 139910226 139910506 + 0.75 NA Intergenic Intergenic 55516 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 138-45 chr20 46156085 46156323 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 37890 NM_001302753 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 169-44 chr4 110855596 110855936 + 0.75 NA Intergenic L1MC5|LINE|L1 4881 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 199-54 chr9 76501942 76502367 + 0.75 NA intron (NM_001097633, intron 2 of 2) intron (NM_001097633, intron 2 of 2) 1521 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 141-56 chr4 47757716 47757997 + 0.75 NA intron (NM_006587, intron 4 of 21) intron (NM_006587, intron 4 of 21) -73489 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 124-47 chr4 114552265 114552632 + 0.75 NA Intergenic LTR8|LTR|ERV1 -45954 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 126.25-101 chrUn_GL000216v2 65375 65609 + 0.75 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 259.25-10 chr7 49671390 49672037 + 0.75 NA Intergenic Intergenic -101925 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 146-21 chr17_GL000205v2_random 34489 34781 + 0.75 NA Intergenic CER|Satellite|Satellite 23331 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 164-17 chr14 24534814 24535090 + 0.75 NA Intergenic Intergenic -26687 NM_001836 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 224.25-25 chr3 31601763 31602219 + 0.75 NA intron (NM_178862, intron 5 of 15) AluJr|SINE|Alu 69066 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 120.75-22 chr12 16699327 16699534 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 -91216 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 170-56 chr9 76121515 76121795 + 0.75 NA intron (NR_120409, intron 9 of 19) L1P3|LINE|L1 230982 NM_006200 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 186.25-28 chr2 104185416 104185794 + 0.75 NA Intergenic L1MEf|LINE|L1 222727 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 200.5-36 chr2 171736031 171736330 + 0.75 NA intron (NM_001271787, intron 13 of 15) MamRep605|LTR?|LTR? 48425 NM_001320883 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 153.5-87 chr7 16071196 16071580 + 0.75 NA Intergenic Intergenic -139098 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 186-11 chr11 96145469 96145774 + 0.75 NA intron (NM_032427, intron 1 of 4) MIRc|SINE|MIR -195817 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 165.5-41 chr19 36834909 36835350 + 0.75 NA intron (NM_001242800, intron 1 of 4) AluSx3|SINE|Alu 2898 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 167.75-55 chr5 61605006 61605255 + 0.75 NA Intergenic Intergenic -32630 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 113-60 chr3 25736941 25737303 + 0.75 NA intron (NM_001145293, intron 6 of 11) MIRb|SINE|MIR 46321 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 115-74 chr8 50002900 50003188 + 0.75 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 91637 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 137.5-117 chr8 109570299 109570586 + 0.75 NA Intergenic Intergenic 29816 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 199.25-12 chr13 67760625 67760890 + 0.75 NA Intergenic Intergenic 388370 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 113.75-63 chr20 31310464 31310763 + 0.75 NA Intergenic Intergenic -2028 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 158.75-29 chr2 21441223 21441487 + 0.75 NA Intergenic Intergenic 269297 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 240.5-11 chr10 86780838 86781246 + 0.75 NA intron (NM_004329, intron 1 of 12) AluSg|SINE|Alu 24403 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 142-38 chr21 30653176 30653487 + 0.75 NA Intergenic Intergenic 10467 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 117-59 chr4 30415521 30415758 + 0.75 NA Intergenic L1MB5|LINE|L1 -304730 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 205-16 chr14 40215843 40216194 + 0.75 NA Intergenic Intergenic -738693 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 141.5-59 chr2 98033942 98034367 + 0.75 NA Intergenic MER4A|LTR|ERV1 -38206 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 197.75-5 chr10 18458367 18458898 + 0.75 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 58057 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 159-36 chr2 127366104 127366376 + 0.75 NA Intergenic Intergenic -23011 NM_006609 10746 Hs.145605 NM_006609 ENSG00000169967 MAP3K2 MEKK2|MEKK2B mitogen-activated protein kinase kinase kinase 2 protein-coding 139.25-12 chr10 99422613 99423057 + 0.75 NA intron (NM_002079, intron 1 of 8) L1ME4b|LINE|L1 7789 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 198.5-15 chr15 93262751 93263098 + 0.75 NA Intergenic L2c|LINE|L2 56858 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 131.25-9 chr1 178463380 178463594 + 0.75 NA intron (NM_004841, intron 12 of 15) MIRc|SINE|MIR -49622 NM_001170724 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 152.5-32 chr14 47231628 47231991 + 0.75 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 111437 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 145.5-64 chr3 137809090 137809456 + 0.75 NA Intergenic Intergenic 37362 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 157.25-3 chr1 185155420 185155754 + 0.75 NA intron (NM_001202423, intron 1 of 14) intron (NM_001202423, intron 1 of 14) 1366 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 189-48 chr7 85546569 85546938 + 0.75 NA Intergenic Intergenic 125631 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 135.5-113 chr9 104576527 104576829 + 0.75 NA Intergenic Intergenic 7510 NM_001004483 138802 Hs.553599 NM_001004483 ENSG00000186943 OR13C8 OR37H|OR9-10 olfactory receptor family 13 subfamily C member 8 protein-coding 154.25-56 chr6 39107157 39107555 + 0.75 NA intron (NM_018322, intron 1 of 1) intron (NM_018322, intron 1 of 1) 7830 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 134.5-80 chr5 174842326 174842512 + 0.75 NA Intergenic Intergenic 90685 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 144.5-39 chr14 53057655 53058072 + 0.75 NA intron (NM_030637, intron 9 of 11) AluSx|SINE|Alu 95460 NM_030637 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 132.25-6 chr10 22989107 22989343 + 0.75 NA intron (NM_001282745, intron 10 of 18) intron (NM_001282745, intron 10 of 18) 61172 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 126.25-13 chr10 66998635 66998929 + 0.75 NA intron (NR_111911, intron 1 of 6) L1MEd|LINE|L1 13371 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 135.5-71 chr3 25952049 25952271 + 0.75 NA Intergenic Intergenic -78465 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 199.75-32 chr4 108685611 108685934 + 0.75 NA Intergenic Intergenic 35173 NM_001267818 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 112.75-40 chr17 69432870 69433119 + 0.75 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 18297 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 144.5-84 chr5 12828412 12828797 + 0.75 NA Intergenic L1ME2|LINE|L1 160745 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 195.5-67 chr4 113259621 113260043 + 0.75 NA intron (NM_001354275, intron 14 of 43) intron (NM_001354275, intron 14 of 43) -33007 NM_001354279 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 117-65 chr4 154501776 154501974 + 0.75 NA Intergenic Intergenic -10076 NM_001358235 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 136.25-68 chr6 164224073 164224334 + 0.75 NA Intergenic L1ME3C|LINE|L1 -552719 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 247.75-29 chrX 85792680 85793105 + 0.75 NA Intergenic L1PA3|LINE|L1 -42888 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 232.25-11 chr19 34754358 34754761 + 0.75 NA Intergenic L1M4c|LINE|L1 18656 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 157.25-17 chr12 4004578 4004906 + 0.75 NA Intergenic Intergenic -131294 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 125.5-42 chr14 53025761 53026096 + 0.75 NA Intergenic L3|LINE|CR1 -74831 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 192.75-30 chr3 190036643 190037050 + 0.75 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 84051 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 120-41 chr18 56191763 56191984 + 0.75 NA promoter-TSS (NR_148972) promoter-TSS (NR_148972) -611 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 178.25-67 chr9 26699333 26699798 + 0.75 NA Intergenic L1PA16|LINE|L1 193237 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 137.25-83 chr9 128424823 128425091 + 0.75 NA intron (NM_001286760, intron 5 of 12) AluSx1|SINE|Alu 4100 NM_016174 51148 Hs.495230 NM_016174 ENSG00000167123 CERCAM CEECAM1|GLT25D3 cerebral endothelial cell adhesion molecule protein-coding 173-22 chr16 64841512 64841823 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 280396 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 212.75-33 chr7 47088444 47089022 + 0.75 NA Intergenic Intergenic 376070 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 142-53 chr5 41879375 41879565 + 0.75 NA Intergenic Intergenic -9045 NR_157114 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 136.5-41 chr16 23516352 23516691 + 0.75 NA Intergenic L2b|LINE|L2 -6027 NM_015044 23062 Hs.460336 NM_015044 ENSG00000103365 GGA2 VEAR golgi associated, gamma adaptin ear containing, ARF binding protein 2 protein-coding 152.25-35 chr2 151061498 151061770 + 0.75 NA Intergenic Intergenic 200229 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 114.5-46 chr2 24862560 24862876 + 0.75 NA intron (NM_001320613, intron 3 of 21) intron (NM_001320613, intron 3 of 21) 57519 NM_001320613 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 148-11 chr11 11994115 11994546 + 0.75 NA intron (NM_015881, intron 4 of 7) MIRb|SINE|MIR 14309 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 234.75-36 chr5 23115718 23116057 + 0.75 NA Intergenic Intergenic -262543 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 187.75-54 chr8 119952437 119952825 + 0.75 NA intron (NM_022783, intron 3 of 8) L1PA10|LINE|L1 78909 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 177-19 chr17 58775169 58775491 + 0.75 NA intron (NM_014906, intron 1 of 6) MIR|SINE|MIR 19461 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 174.75-11 chr11 127807903 127808199 + 0.75 NA Intergenic Intergenic -400715 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 229.25-17 chr21 22879769 22880094 + 0.75 NA Intergenic Intergenic -199353 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 119-33 chr17 77566123 77566376 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 19308 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 157.25-53 chr4 60790316 60790557 + 0.75 NA Intergenic Intergenic -132183 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 119.5-70 chr21 18673387 18673590 + 0.75 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 12676 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 154.25-49 chr3 195086970 195087291 + 0.75 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) -7458 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 151.5-8 chr1 237552632 237552884 + 0.75 NA intron (NM_001035, intron 27 of 104) L1ME2|LINE|L1 81639 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 169.75-32 chr2 64915040 64915340 + 0.75 NA intron (NR_036586, intron 1 of 2) FRAM|SINE|Alu 17257 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 143.25-71 chr8 52244788 52245002 + 0.75 NA intron (NM_001352881, intron 2 of 2) intron (NM_001352881, intron 2 of 2) 3749 NM_001352869 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 170.5-54 chr4 171216982 171217259 + 0.75 NA Intergenic Intergenic 30936 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 223.25 chr1 11653609 11653984 + 0.75 NA promoter-TSS (NM_001304791) promoter-TSS (NM_001304791) -611 NM_183412 93611 Hs.556006 NM_033182 ENSG00000132879 FBXO44 FBG3|FBX30|FBX6A|Fbx44|Fbxo6a F-box protein 44 protein-coding 165.25-31 chr20 52023880 52024280 + 0.75 NA Intergenic Intergenic 81404 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 157.25-26 chr14 30897723 30898063 + 0.75 NA intron (NM_001083893, intron 16 of 17) intron (NM_001083893, intron 16 of 17) -8085 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 149-43 chr4 173464248 173464563 + 0.75 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) 54833 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 203-28 chr5 55452638 55453007 + 0.75 NA intron (NR_103485, intron 4 of 6) intron (NR_103485, intron 4 of 6) 56104 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 158.5-66 chr3 27515583 27515961 + 0.75 NA Intergenic L1M4|LINE|L1 -31388 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 129.75-67 chr5 133088469 133088850 + 0.75 NA intron (NM_002154, intron 9 of 18) intron (NM_002154, intron 9 of 18) 36646 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 173.25-31 chr2 85993351 85993837 + 0.75 NA Intergenic AluSc8|SINE|Alu 104314 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 150.75-18 chr16 2137707 2138024 + 0.75 NA Intergenic AluSg|SINE|Alu -1736 NR_037467 100500916 NR_037467 ENSG00000264397 MIR3180-5 mir-3180-5 microRNA 3180-5 ncRNA 214-42 chr8 124107852 124108193 + 0.75 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) 63500 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 154.25-16 chr11 62183821 62184211 + 0.75 NA Intergenic L1PA13|LINE|L1 -6200 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 119.25-63 chr22 28476488 28476781 + 0.75 NA intron (NM_001145418, intron 2 of 22) L1ME3F|LINE|L1 16765 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 167.25-24 chr14 29330315 29330691 + 0.75 NA Intergenic MER97c|DNA|hAT-Tip100 -544716 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 210.25-16 chr16 49007001 49007488 + 0.75 NA Intergenic MIR3|SINE|MIR 274594 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 130.25-5 chr1 167257329 167257630 + 0.75 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 36593 NM_002697 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 170.75-41 chr2 112859914 112860239 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -23297 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 166.5-88 chr5 112281827 112282118 + 0.75 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 53689 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 159-44 chr22 29655951 29656266 + 0.75 NA intron (NR_156186, intron 7 of 16) AluJb|SINE|Alu 52475 NM_181830 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 147.75-41 chr20 919988 920302 + 0.75 NA Intergenic Intergenic -3811 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 244.5-33 chr5 108961240 108961888 + 0.75 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 36958 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 120.75-5 chr10 33953174 33953517 + 0.75 NA Intergenic AluYm1|SINE|Alu -180665 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 114.5-2 chr1 37372287 37372443 + 0.75 NA Intergenic Intergenic 102078 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 205.5-49 chr6 117594208 117594564 + 0.75 NA intron (NM_001017408, intron 1 of 7) L2b|LINE|L2 8125 NM_020399 57120 Hs.191539 NM_020399 ENSG00000047932 GOPC CAL|FIG|GOPC1|PIST|dJ94G16.2 golgi associated PDZ and coiled-coil motif containing protein-coding 184.75-45 chr4 146240522 146241019 + 0.75 NA Intergenic MIRb|SINE|MIR 26232 NM_001354631 345051 Hs.170876 NM_001354631 ENSG00000250673 REELD1 - reeler domain containing 1 protein-coding 122.75-54 chr3 41918001 41918165 + 0.75 NA intron (NR_136342, intron 7 of 34) intron (NR_136342, intron 7 of 34) 44020 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 133.5-71 chr3 189215760 189216065 + 0.75 NA intron (NM_198485, intron 3 of 5) intron (NM_198485, intron 3 of 5) 24682 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 165.25-33 chr22 31770264 31770484 + 0.75 NA intron (NR_146296, intron 7 of 42) intron (NR_146296, intron 7 of 42) 16351 NM_001369903 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 154.75-30 chr2 109414574 109414824 + 0.75 NA intron (NM_001099289, intron 4 of 9) L2|LINE|L2 -101074 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 252.25-23 chr8 139032966 139033558 + 0.75 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -119221 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 207-39 chr4 32438404 32438791 + 0.75 NA Intergenic Intergenic 87559 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 163-35 chr3 39967602 39967855 + 0.75 NA intron (NM_001284424, intron 2 of 15) L1PA14|LINE|L1 -132283 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 113.25-85 chr3 88979261 88979477 + 0.75 NA Intergenic Intergenic -128252 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 135-44 chr20 3880048 3880229 + 0.75 NA Intergenic AluY|SINE|Alu -8643 NM_024960 80025 Hs.114180 NM_024960 ENSG00000125779 PANK2 C20orf48|HARP|HSS|NBIA1|PKAN pantothenate kinase 2 protein-coding 163-34 chr3 28395442 28395842 + 0.75 NA intron (NM_001040432, intron 2 of 9) L1MA9|LINE|L1 46493 NM_001324170 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 173.5-81 chr5 32265230 32265654 + 0.75 NA intron (NM_001294344, intron 6 of 13) intron (NM_001294344, intron 6 of 13) 47497 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 157.5-5 chr1 111413957 111414371 + 0.75 NA TTS (NM_002557) TTS (NM_002557) 13571 NM_002557 5016 Hs.1154 NM_002557 ENSG00000085465 OVGP1 CHIT5|EGP|MUC9|OGP oviductal glycoprotein 1 protein-coding 142.75-36 chr2 14902033 14902323 + 0.75 NA Intergenic AluSz6|SINE|Alu 269461 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 128.75-74 chr5 57816644 57816852 + 0.75 NA Intergenic L2a|LINE|L2 82414 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 205.75-15 chr15 87236887 87237273 + 0.75 NA Intergenic Intergenic -248654 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 124.75-6 chr1 116509657 116509911 + 0.75 NA Intergenic L2a|LINE|L2 -30958 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 114-5 chr1 111004200 111004527 + 0.75 NA Intergenic MER65-int|LTR|ERV1 -40419 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 130.25-33 chr16 25981160 25981382 + 0.75 NA intron (NM_006040, intron 1 of 1) AluSq2|SINE|Alu -43966 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 116.25-33 chr17 27971597 27971979 + 0.75 NA intron (NR_146896, intron 2 of 4) Charlie4a|DNA|hAT-Charlie 19919 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 141.75-68 chr5 114325373 114325709 + 0.75 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -36529 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 137.75-45 chr2 78850254 78850506 + 0.75 NA Intergenic L1MEd|LINE|L1 -175322 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 118.25-100 chr7 46297982 46298181 + 0.75 NA Intergenic L1MDa|LINE|L1 -376809 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 185.75-36 chr21 19190928 19191211 + 0.75 NA Intergenic Intergenic -431257 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 127.25-44 chr2 16049293 16049500 + 0.75 NA Intergenic Intergenic -1031 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 133-62 chr7 121661153 121661501 + 0.75 NA Intergenic L1MC1|LINE|L1 -211834 NM_001206839 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 216.25-17 chr2 34466518 34466880 + 0.75 NA Intergenic L1PA7|LINE|L1 -210858 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 167.25-76 chr7 26855218 26855561 + 0.75 NA intron (NM_003930, intron 1 of 12) intron (NM_003930, intron 1 of 12) 2334 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 142.75-72 chr5 176844899 176845353 + 0.75 NA intron (NM_133369, intron 1 of 14) intron (NM_133369, intron 1 of 14) 34567 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 netrin receptor A protein-coding 145.75-62 chr5 115518692 115518997 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 25931 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 233.75-18 chr2 173983753 173984142 + 0.75 NA Intergenic Intergenic -18245 NM_003111 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 175.25-20 chr15 42460245 42460698 + 0.75 NA intron (NM_001366845, intron 3 of 21) intron (NM_001366845, intron 3 of 21) -2904 NM_001284306 64397 Hs.511143 NM_022473 ENSG00000103994 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 140-23 chr15 68965703 68965964 + 0.75 NA intron (NM_001184780, intron 1 of 15) L1PB2|LINE|L1 35308 NM_001184780 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 124.5-54 chr2 77578663 77579034 + 0.75 NA Intergenic Intergenic -56415 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 135.5-8 chr10 52627400 52627700 + 0.75 NA intron (NR_155748, intron 1 of 2) MER33|DNA|hAT-Charlie 127854 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 128-47 chr4 63295635 63295849 + 0.75 NA Intergenic L2|LINE|L2 1113708 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 148-40 chr20 45200542 45200827 + 0.75 NA Intergenic L1M1|LINE|L1 -6349 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 113-18 chr12 6076557 6076761 + 0.75 NA intron (NM_000552, intron 6 of 51) intron (NM_000552, intron 6 of 51) -36476 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 161.75-50 chr6 104412870 104413298 + 0.75 NA Intergenic MER39|LTR|ERV1 446462 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 156.75-30 chr14 55599765 55600154 + 0.75 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 19752 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 164.75-3 chr1 187521613 187521924 + 0.75 NA Intergenic Intergenic 78140 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 114-54 chr21 27294439 27294736 + 0.75 NA Intergenic Intergenic -327499 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 136.75-100 chr7 152884285 152884645 + 0.75 NA Intergenic Intergenic 124713 NM_020445 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA actin related protein 3B protein-coding 219.5-51 chr8 138982214 138982620 + 0.75 NA Intergenic L1ME1|LINE|L1 -68376 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 132.75-100 chr8 128258948 128259194 + 0.75 NA Intergenic MIRc|SINE|MIR 108955 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 159.5-45 chr2 180702446 180702805 + 0.75 NA intron (NR_104323, intron 1 of 5) L1M2|LINE|L1 10521 NR_104320 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 161.5-61 chr3 122673066 122673540 + 0.75 NA Intergenic AluJb|SINE|Alu -7536 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 119-7 chr1 205557689 205557977 + 0.75 NA intron (NR_152721, intron 3 of 3) L1MA5|LINE|L1 -11181 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 127-11 chr10 28774301 28774502 + 0.75 NA intron (NR_120652, intron 2 of 3) HAL1ME|LINE|L1 21649 NR_038374 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 217.75-33 chr5 104264784 104265319 + 0.75 NA Intergenic Intergenic -702262 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 160.5-71 chr7 33612448 33612669 + 0.75 NA intron (NM_001348041, intron 22 of 22) intron (NM_001348041, intron 22 of 22) -292357 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 161.75-64 chr8 132137354 132137593 + 0.75 NA intron (NM_001204824, intron 12 of 14) L1M5|LINE|L1 -32208 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 181.25-30 chr2 88669913 88670291 + 0.75 NA Intergenic MIRb|SINE|MIR -21571 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 200.5-8 chr10 11506278 11506698 + 0.75 NA intron (NM_014688, intron 6 of 14) AluJo|SINE|Alu 25792 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 164-44 chr5 10386043 10386344 + 0.75 NA intron (NM_005885, intron 4 of 25) intron (NM_005885, intron 4 of 25) -16171 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 175-57 chr8 77682438 77682819 + 0.75 NA Intergenic Intergenic 231931 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 168.25-60 chr7 78676557 78677136 + 0.75 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) 329604 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 165.5-81 chr7 27774698 27774992 + 0.75 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 34750 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 166-58 chr8 83679190 83679491 + 0.75 NA Intergenic Intergenic 275582 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 155.5-77 chr4 130997133 130997384 + 0.75 NA Intergenic MER61-int|LTR|ERV1 620897 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 168.25-58 chr7 44951017 44951458 + 0.75 NA Intergenic AluSx1|SINE|Alu 27778 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 161.5-87 chr9 22109979 22110398 + 0.75 NA intron (NR_003529, intron 14 of 18) intron (NR_003529, intron 14 of 18) -100875 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 120.5-33 chr14 72259245 72259600 + 0.75 NA intron (NM_001370288, intron 2 of 16) MER102c|DNA|hAT-Charlie -257398 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 122.25-97 chr9 27262998 27263302 + 0.75 NA intron (NR_026679, intron 11 of 16) MIR|SINE|MIR 19643 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 155.75-75 chr9 102848530 102848940 + 0.75 NA Intergenic Intergenic -146598 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 164.5-60 chr3 167716257 167716533 + 0.75 NA intron (NM_145859, intron 3 of 8) L1MA3|LINE|L1 18447 NM_145860 11235 Hs.478150 NM_007217 ENSG00000114209 PDCD10 CCM3|TFAR15 programmed cell death 10 protein-coding 171-24 chr14 73884876 73885231 + 0.75 NA non-coding (NR_163921, exon 10 of 10) non-coding (NR_163921, exon 10 of 10) -1806 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 175.5-65 chr6 24268437 24268726 + 0.75 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) -88322 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 120-92 chrY 56834177 56834435 + 0.75 NA Intergenic Intergenic -119949 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 139.25-64 chr4 102114613 102115018 + 0.75 NA Intergenic Intergenic 209497 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 183.75-17 chr14 61236049 61236444 + 0.75 NA Intergenic MER41A|LTR|ERV1 45092 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 150.25-14 chr11 123082064 123082428 + 0.75 NA intron (NM_024769, intron 5 of 6) intron (NM_024769, intron 5 of 6) -20110 NM_153201 3312 Hs.180414 NM_006597 ENSG00000109971 HSPA8 HEL-33|HEL-S-72p|HSC54|HSC70|HSC71|HSP71|HSP73|HSPA10|LAP-1|LAP1|NIP71 heat shock protein family A (Hsp70) member 8 protein-coding 185-27 chr22 33181185 33181456 + 0.75 NA Intergenic MIRb|SINE|MIR 72791 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 128.75-76 chr5 109124539 109124793 + 0.75 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 200060 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 148 chr1 159153934 159154306 + 0.75 NA Intergenic Intergenic -17495 NM_001127173 57863 Hs.365689 NM_021189 ENSG00000162706 CADM3 BIgR|IGSF4B|NECL1|Necl-1|TSLL1|synCAM3 cell adhesion molecule 3 protein-coding 128-3 chr10 32582586 32582858 + 0.75 NA intron (NM_001321115, intron 17 of 43) intron (NM_001321115, intron 17 of 43) 136582 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 114.25-75 chr4 14023566 14023829 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -88271 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 176.75-26 chr2 153358302 153358603 + 0.75 NA Intergenic Intergenic 120310 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 183.75-38 chr3 79902211 79902629 + 0.75 NA Intergenic Intergenic -134422 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 113.75-56 chr2 81889713 81889900 + 0.75 NA Intergenic Intergenic -422860 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 185-41 chr7 95975629 95975916 + 0.75 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 203266 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 115.5-60 chr3 118861799 118862121 + 0.75 NA Intergenic L1MA2|LINE|L1 -51127 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 160.75-9 chr10 56768137 56768515 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 -407053 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 136.25-24 chr14 43594253 43594471 + 0.75 NA Intergenic L1M2|LINE|L1 912921 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 186.75-19 chr16 75590560 75590920 + 0.75 NA Intergenic Intergenic 24361 NM_007285 11345 Hs.461379 NM_007285 ENSG00000034713 GABARAPL2 ATG8|ATG8C|GATE-16|GATE16|GEF-2|GEF2 GABA type A receptor associated protein like 2 protein-coding 121.25-61 chr5 113834873 113835168 + 0.75 NA Intergenic Intergenic 321326 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 122.25-11 chr10 74894556 74894750 + 0.75 NA intron (NM_001370144, intron 3 of 15) L1MB2|LINE|L1 -18133 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 193.25-40 chr6 65120930 65121253 + 0.75 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -180327 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 118.25-43 chr18 46712565 46712842 + 0.75 NA intron (NM_013305, intron 1 of 6) L2a|LINE|L2 44350 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 228.25-28 chr3 121464587 121465011 + 0.75 NA intron (NM_199420, intron 24 of 29) Tigger4b|DNA|TcMar-Tigger 81189 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 120.5-45 chr2 28685539 28685746 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 50563 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 150.75-19 chr16 64263050 64263360 + 0.75 NA Intergenic Intergenic 858858 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 192.75-33 chr4 74582749 74583087 + 0.75 NA Intergenic L2a|LINE|L2 137782 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 134.25-27 chr16 51435015 51435343 + 0.75 NA Intergenic Intergenic -283907 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 124.75-2 chr1 37569129 37569427 + 0.75 NA exon (NM_001323623, exon 14 of 17) exon (NM_001323623, exon 14 of 17) 12338 NM_003462 7802 Hs.406050 NM_003462 ENSG00000163879 DNALI1 P28|dJ423B22.5|hp28 dynein axonemal light intermediate chain 1 protein-coding 149-5 chr10 29116386 29116692 + 0.75 NA Intergenic Intergenic -172531 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 156-29 chr15 86845848 86846147 + 0.75 NA intron (NM_152336, intron 23 of 24) LTR51|LTR|ERV1 -86883 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 127.5-75 chr3 24061609 24061941 + 0.75 NA Intergenic Intergenic 41472 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 199.75-27 chr3 116915094 116915475 + 0.75 NA Intergenic L2a|LINE|L2 -6147 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 154.75-34 chr2 201210515 201210839 + 0.75 NA intron (NM_032974, intron 9 of 9) intron (NM_032974, intron 9 of 9) -22766 NM_033355 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 123.5-36 chr14 82609132 82609331 + 0.75 NA Intergenic Intergenic -33401 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 191.75-20 chr2 32418466 32419036 + 0.75 NA intron (NM_016252, intron 10 of 73) intron (NM_016252, intron 10 of 73) 61723 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 122-2 chr1 50159698 50159889 + 0.75 NA intron (NM_001144774, intron 2 of 6) intron (NM_001144774, intron 2 of 6) 49960 NR_136725 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 147.25-34 chr2 156993606 156993988 + 0.75 NA Intergenic Intergenic -263908 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 145.5-34 chr17 59683133 59683438 + 0.75 NA intron (NM_001288653, intron 25 of 31) intron (NM_001288653, intron 25 of 31) 24313 NM_016077 51651 Hs.12677 NM_016077 ENSG00000141378 PTRH2 BIT1|CFAP37|CGI-147|IMNEPD|PTH|PTH 2|PTH2 peptidyl-tRNA hydrolase 2 protein-coding 130-79 chr8 43742109 43742370 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 449797 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 226-12 chr16 69802593 69803045 + 0.75 NA intron (NM_001270455, intron 4 of 8) AluSx1|SINE|Alu -35918 NM_001270453 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 159-16 chr12 123367931 123368342 + 0.75 NA Intergenic AluSx1|SINE|Alu 3188 NR_157806 112268105 Hs.7012 NR_157805 SBNO1-AS1 - SBNO1 antisense RNA 1 ncRNA 222.75-11 chr13 22466839 22467184 + 0.75 NA Intergenic Intergenic 256726 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 113.25-107 chr7 84387077 84387373 + 0.75 NA Intergenic Intergenic -145251 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 125.5-69 chr2 120263072 120263356 + 0.75 NA intron (NM_002881, intron 1 of 4) AluJb|SINE|Alu 10362 NM_001369400 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 123.25-81 chr9 77789773 77790089 + 0.75 NA intron (NM_002072, intron 5 of 6) intron (NM_002072, intron 5 of 6) -141609 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 172-42 chr6 96833709 96834143 + 0.75 NA intron (NM_001143957, intron 1 of 2) intron (NM_001143957, intron 1 of 2) 3551 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 215.25-15 chr2 919803 920394 + 0.75 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -14647 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 217.5-25 chr20 40869243 40869728 + 0.75 NA Intergenic Intergenic -111228 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 119-31 chr17 59491531 59491772 + 0.75 NA intron (NR_110813, intron 2 of 2) AluJr|SINE|Alu 35206 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 146-37 chr22 29009347 29009627 + 0.75 NA intron (NM_001206998, intron 2 of 8) intron (NM_001206998, intron 2 of 8) 21989 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 137.25-58 chr4 89485173 89485545 + 0.75 NA Intergenic Intergenic -177559 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 169.25-4 chr1 214267893 214268300 + 0.75 NA Intergenic L1ME4a|LINE|L1 -13063 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 149.5-67 chr3 62704228 62704476 + 0.75 NA intron (NM_003716, intron 3 of 29) intron (NM_003716, intron 3 of 29) 171064 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 225-36 chr7 114494612 114494925 + 0.75 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 68266 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 162.75-2 chr1 115960165 115960471 + 0.75 NA intron (NR_125970, intron 1 of 4) intron (NR_125970, intron 1 of 4) -16195 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 155.25-51 chr4 58211465 58211875 + 0.75 NA Intergenic L2a|LINE|L2 324658 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 132.75-25 chr11 39713653 39713932 + 0.75 NA Intergenic Intergenic 579338 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 154.25-14 chr11 27958871 27959310 + 0.75 NA Intergenic Intergenic -97725 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 133.5-42 chr17 27160157 27160458 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -71066 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 119.5-11 chr10 22944828 22944997 + 0.75 NA intron (NM_001282747, intron 2 of 15) intron (NM_001282747, intron 2 of 15) 16859 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 112.75-35 chr15 96816586 96816736 + 0.75 NA Intergenic MER34|LTR|ERV1 33226 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 174.25-9 chr10 61027322 61027690 + 0.75 NA Intergenic Intergenic 11231 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 114.25-22 chr11 114941628 114941855 + 0.75 NA Intergenic Intergenic 263214 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 122-56 chr4 90788529 90788734 + 0.75 NA intron (NM_001145065, intron 7 of 10) MLT1C|LTR|ERVL-MaLR 553600 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 125.5-108 chr5 173524303 173524498 + 0.75 NA Intergenic L2a|LINE|L2 -55234 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 117-4 chr1 164972552 164972765 + 0.75 NA Intergenic MamTip2|DNA|hAT-Tip100 -198017 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 127.25-25 chr14 30023882 30024139 + 0.75 NA Intergenic Intergenic -96163 NM_001330069 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 235-21 chr19 4187998 4188628 + 0.75 NA intron (NM_133475, intron 2 of 21) AluSq2|SINE|Alu 4959 NM_133475 170961 Hs.197872 NM_133475 ENSG00000089847 ANKRD24 - ankyrin repeat domain 24 protein-coding 167.75-54 chr5 12356816 12357162 + 0.75 NA Intergenic L1M2|LINE|L1 -217868 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 167.5-30 chr17 51653038 51653323 + 0.75 NA intron (NM_001082533, intron 6 of 9) intron (NM_001082533, intron 6 of 9) 217753 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 114.75 chr1 69253123 69253399 + 0.75 NA Intergenic Intergenic -179994 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 122.25-53 chr2 117664661 117664868 + 0.75 NA Intergenic Intergenic -149927 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 185.75-38 chr22 19865065 19865347 + 0.75 NA Intergenic L1MEf|LINE|L1 -10332 NM_053004 54584 Hs.105642 NM_053004 ENSG00000185838 GNB1L DGCRK3|FKSG1|GY2|WDR14|WDVCF G protein subunit beta 1 like protein-coding 169.5-80 chr8 34426093 34426386 + 0.75 NA Intergenic L2a|LINE|L2 -357682 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 118.25-77 chr5 56106615 56106888 + 0.75 NA intron (NM_024669, intron 10 of 11) AluJr|SINE|Alu 111584 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 148-24 chr14 81951598 81952052 + 0.75 NA Intergenic Intergenic -208687 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 335.25-11 chr6 39613737 39614339 + 0.75 NA intron (NM_001289020, intron 5 of 21) intron (NM_001289020, intron 5 of 21) 111370 NM_001289020 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 139-5 chr10 90211997 90212294 + 0.75 NA Intergenic Intergenic -254772 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 143.25-79 chr9 30454658 30454901 + 0.75 NA Intergenic MLT1E1|LTR|ERVL-MaLR -46325 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 113.75-31 chr13 41813353 41813675 + 0.75 NA intron (NM_001009814, intron 16 of 25) intron (NM_001009814, intron 16 of 25) 147571 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 169.75-11 chr11 10086356 10086785 + 0.75 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 207637 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 162.5-91 chr8 79546095 79546528 + 0.75 NA Intergenic L1M1|LINE|L1 -64806 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 129.25-37 chr19 50939755 50940057 + 0.75 NA Intergenic Intergenic 13132 NM_001077491 25818 Hs.50915 NM_012427 ENSG00000167754 KLK5 KLK-L2|KLKL2|SCTE kallikrein related peptidase 5 protein-coding 169.5-61 chr5 7377830 7378195 + 0.75 NA Intergenic Intergenic -18126 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 151.5-10 chr10 15690848 15691080 + 0.75 NA intron (NM_001291494, intron 2 of 28) L1MA7|LINE|L1 28958 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 154.25-27 chr14 65455657 65455895 + 0.75 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -15326 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 196.75-32 chr5 46254081 46254518 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -557919 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 136.5-79 chr4 33300131 33300407 + 0.75 NA Intergenic MIR|SINE|MIR 739624 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 122.25-59 chr20 32743614 32743897 + 0.75 NA 5' UTR (NM_053041, exon 1 of 9) 5' UTR (NM_053041, exon 1 of 9) 253 NM_053041 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 141-57 chr4 53372449 53372699 + 0.75 NA Intergenic L2|LINE|L2 -5067 NM_030917 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 117.5-43 chr2 12064676 12064897 + 0.75 NA intron (NR_110196, intron 2 of 5) MER45B|DNA|hAT-Tip100 57670 NR_110197 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 114-40 chr16 68398360 68398603 + 0.75 NA intron (NM_018667, intron 1 of 8) intron (NM_018667, intron 1 of 8) 50027 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 158.25-51 chr5 67622938 67623205 + 0.75 NA Intergenic Intergenic 23718 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 153.25-16 chr12 120001712 120002205 + 0.75 NA intron (NR_147894, intron 3 of 8) AluJr|SINE|Alu 12114 NR_147892 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 118.5-117 chr8 108102363 108102616 + 0.75 NA Intergenic AluYm1|SINE|Alu -18869 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 147-74 chr7 54942420 54942744 + 0.75 NA Intergenic Intergenic -76435 NM_001346898 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 158.75-7 chr10 72121647 72121962 + 0.75 NA intron (NM_001369103, intron 8 of 9) L1MCa|LINE|L1 -32772 NM_014767 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 181.25-33 chr2 175732257 175732750 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR 269764 NM_030650 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 129.5-10 chr10 20905046 20905260 + 0.75 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -7551 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 279.25-4 chr11 109677758 109678324 + 0.75 NA Intergenic Intergenic 255851 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 210.25-38 chr5 125885010 125885507 + 0.75 NA Intergenic L1MD1|LINE|L1 -294319 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 167-17 chr16 7204305 7204603 + 0.75 NA intron (NM_018723, intron 4 of 15) AluJb|SINE|Alu -128391 NM_145892 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 170-11 chr14 52745537 52745830 + 0.75 NA intron (NM_001130701, intron 3 of 11) intron (NM_001130701, intron 3 of 11) 15517 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 120.75-39 chr17 71275868 71276128 + 0.75 NA Intergenic Intergenic -73819 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 127.5-123 chr8 57772316 57772507 + 0.75 NA Intergenic L1MEg|LINE|L1 26262 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 171.25-3 chr1 154979582 154979858 + 0.75 NA TTS (NM_001826) TTS (NM_001826) -3624 NM_001184892 80308 Hs.118666 NM_025207 ENSG00000160688 FLAD1 FAD1|FADS|LSMFLAD|PP591 flavin adenine dinucleotide synthetase 1 protein-coding 118.75-59 chr2 208198624 208198949 + 0.75 NA Intergenic LTR88c|LTR|Gypsy? -8756 NM_001099334 389073 Hs.198416 NM_001099334 ENSG00000188674 C2orf80 GONDA1 chromosome 2 open reading frame 80 protein-coding 113.75-76 chr3 123024495 123024788 + 0.75 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 3122 NM_001031702 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 127.75-44 chr18 74378735 74378905 + 0.75 NA Intergenic Intergenic -30628 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 178.25-57 chr7 2739510 2739810 + 0.75 NA intron (NM_007353, intron 2 of 3) L1MB5|LINE|L1 23480 NM_001282440 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 122-78 chr9 109522427 109522650 + 0.75 NA Intergenic Intergenic -10993 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 144.75-5 chr1 195187183 195187458 + 0.75 NA Intergenic Intergenic 901395 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 183.25-36 chr4 42562682 42563106 + 0.75 NA intron (NM_001105529, intron 14 of 35) THE1B|LTR|ERVL-MaLR 94211 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 148-58 chr6 64426925 64427236 + 0.75 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 620244 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 145.5-100 chr9 85653383 85653708 + 0.75 NA intron (NM_015239, intron 11 of 25) intron (NM_015239, intron 11 of 25) 88484 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 193.5-48 chr3 170841577 170842043 + 0.75 NA Intergenic Intergenic 28385 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 122.75-60 chr4 68265411 68265696 + 0.75 NA Intergenic MER41B|LTR|ERV1 -19859 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 129.75-12 chr10 91168540 91168882 + 0.75 NA intron (NM_001257101, intron 1 of 9) AluSx3|SINE|Alu 5699 NM_001257101 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 113.5-21 chr11 33120836 33121026 + 0.75 NA intron (NM_001326, intron 3 of 20) intron (NM_001326, intron 3 of 20) 40549 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 177.5-65 chr8 25474648 25475087 + 0.75 NA intron (NM_001317906, intron 6 of 13) intron (NM_001317906, intron 6 of 13) 15634 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 208-44 chr9 118228878 118229435 + 0.75 NA Intergenic L2c|LINE|L2 -450515 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 127.5-121 chr7 102940625 102941075 + 0.75 NA intron (NM_001031692, intron 3 of 3) intron (NM_001031692, intron 3 of 3) 27850 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 147.25-31 chr2 112637193 112637493 + 0.75 NA Intergenic Intergenic 6837 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 118-8 chr1 246940258 246940555 + 0.75 NA Intergenic L2a|LINE|L2 -8458 NR_136586 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 146.5-7 chr1 193545532 193545869 + 0.75 NA Intergenic Intergenic 240955 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 135-43 chr2 222465531 222465868 + 0.75 NA intron (NM_001320833, intron 2 of 5) intron (NM_001320833, intron 2 of 5) 41156 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 149.5-44 chr17 69379350 69379728 + 0.75 NA Intergenic AluSx1|SINE|Alu -35158 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 121.75-68 chr5 18914938 18915151 + 0.75 NA Intergenic Intergenic 971228 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 247.25-14 chr2 116341550 116342094 + 0.75 NA Intergenic Intergenic 998007 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 128.25-23 chr14 22542115 22542408 + 0.75 NA Intergenic Intergenic 14801 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 225.5-37 chr4 114453790 114454304 + 0.75 NA Intergenic MER41A|LTR|ERV1 -144355 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 183-9 chr10 60386191 60386561 + 0.75 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 3499 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 141.75-55 chr3 85437095 85437370 + 0.75 NA intron (NM_001167674, intron 1 of 9) L1MC1|LINE|L1 51522 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 118-30 chr15 79805907 79806123 + 0.75 NA Intergenic L2a|LINE|L2 90982 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 227.5-19 chr15 66784507 66784899 + 0.75 NA Intergenic MIR3|SINE|MIR 82467 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 189.5-71 chr8 139325952 139326431 + 0.75 NA Intergenic HERV16-int|LTR|ERVL 376932 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 146.75-19 chr17 44573505 44573839 + 0.75 NA Intergenic Intergenic 16188 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 131.5-76 chr5 96012270 96012483 + 0.75 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 50375 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 156.75-73 chr5 18712109 18712460 + 0.75 NA Intergenic Intergenic 905010 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 189.25-34 chr5 6828708 6829172 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie -1019 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 161.25-74 chr6 148132746 148133116 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -139397 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 113-50 chr2 117260366 117260633 + 0.75 NA Intergenic L1MC4a|LINE|L1 -554192 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 160-30 chr3 135949844 135950202 + 0.75 NA Intergenic Intergenic -15705 NM_002718 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 223.25-36 chr9 87542117 87542712 + 0.75 NA intron (NM_004938, intron 2 of 25) MIRb|SINE|MIR -11040 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 192-40 chr4 121273166 121273654 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR -45927 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 129.25-30 chr14 67159038 67159346 + 0.75 NA intron (NM_001024218, intron 17 of 21) L2a|LINE|L2 -30248 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 162.25-36 chr5 61234308 61234593 + 0.75 NA Intergenic L1ME4b|LINE|L1 30479 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 208.5-32 chr18 5317880 5318314 + 0.75 NA Intergenic L2b|LINE|L2 -21044 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 154-4 chr10 76226639 76226965 + 0.75 NA intron (NM_001305581, intron 5 of 6) MSTB1|LTR|ERVL-MaLR 444041 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 116-74 chr8 113101580 113101866 + 0.75 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 275429 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 124-4 chr1 154441362 154441655 + 0.75 NA intron (NM_000565, intron 6 of 9) L3b|LINE|CR1 -34944 NR_147855 101928101 Hs.617089 NR_147855 ENSG00000228013 IL6R-AS1 - IL6R antisense RNA 1 ncRNA 216.5-7 chr11 124338660 124339046 + 0.75 NA Intergenic Intergenic -18656 NM_001002918 283160 Hs.504212 NM_001002918 ENSG00000279116 OR8D2 JCG2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding 199-2 chr1 47870677 47871118 + 0.75 NA intron (NM_001194986, intron 2 of 6) L2c|LINE|L2 126488 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 150.75-44 chr3 26875763 26876136 + 0.75 NA Intergenic L1P3|LINE|L1 181392 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 158-41 chr3 52800277 52800529 + 0.75 NA intron (NM_002217, intron 9 of 21) intron (NM_002217, intron 9 of 21) 5635 NM_002217 3699 Hs.76716 NM_002217 ENSG00000162267 ITIH3 H3P|ITI-HC3|SHAP inter-alpha-trypsin inhibitor heavy chain 3 protein-coding 118.5-80 chr4 56115136 56115537 + 0.75 NA Intergenic Intergenic -54859 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 119-30 chr17 56311644 56311914 + 0.75 NA intron (NM_001370326, intron 3 of 20) Tigger4|DNA|TcMar-Tigger 158304 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 165.75-44 chr4 36323134 36323505 + 0.75 NA intron (NM_001170700, intron 8 of 9) intron (NM_001170700, intron 8 of 9) 41703 NR_160267 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 153-33 chr4 20012672 20012969 + 0.75 NA Intergenic MER99|DNA|hAT? -239085 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 138.5-10 chr1 194284565 194284828 + 0.75 NA Intergenic Tigger8|DNA|TcMar-Tigger 979951 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 201.25-12 chr15 51167535 51167885 + 0.75 NA intron (NR_146310, intron 1 of 2) L1MD3|LINE|L1 -62434 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 121.75-75 chr6 136555496 136555801 + 0.75 NA Intergenic AluJr|SINE|Alu -4829 NM_003980 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 160.25-51 chr6 39100564 39100830 + 0.75 NA Intergenic L2c|LINE|L2 14489 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 145.5-24 chr12 122623090 122623363 + 0.75 NA intron (NM_014708, intron 62 of 63) Tigger15a|DNA|TcMar-Tigger 72773 NR_162094 113218484 NR_162094 MIR9902-1 - microRNA 9902-1 ncRNA 124-58 chr5 113348534 113348789 + 0.75 NA intron (NM_001085377, intron 2 of 18) L1MA2|LINE|L1 -53723 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 145.75-54 chr3 35920694 35921050 + 0.75 NA Intergenic L1PA16|LINE|L1 176396 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 128.25-50 chr4 22812333 22812673 + 0.75 NA intron (NR_102357, intron 4 of 4) intron (NR_102357, intron 4 of 4) 98414 NM_001277225 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 247-3 chr10 99111749 99112196 + 0.75 NA intron (NM_021828, intron 3 of 11) L2b|LINE|L2 123903 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 151.25-54 chr7 29356105 29356341 + 0.75 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -123489 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 123-7 chr10 8759977 8760242 + 0.75 NA Intergenic L1ME3B|LINE|L1 -137880 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 140.75-17 chr13 68847667 68847906 + 0.75 NA Intergenic Intergenic 37539 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 184.25-24 chr2 218623011 218623425 + 0.75 NA intron (NM_032726, intron 6 of 15) intron (NM_032726, intron 6 of 15) 15319 NM_032726 84812 Hs.632528 NM_032726 ENSG00000115556 PLCD4 - phospholipase C delta 4 protein-coding 117.25-103 chrX 71616775 71617052 + 0.75 NA exon (NM_001504, exon 2 of 2) exon (NM_001504, exon 2 of 2) 1598 NM_001142797 2833 Hs.198252 NM_001504 ENSG00000186810 CXCR3 CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR C-X-C motif chemokine receptor 3 protein-coding 146.75-40 chr4 99966725 99967037 + 0.75 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 16387 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 166.5-80 chr5 18439360 18439653 + 0.75 NA Intergenic L1MEc|LINE|L1 632232 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 130.25-20 chr12 30050643 30050958 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -266041 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 113.5-50 chr17 70061396 70061594 + 0.75 NA intron (NR_104130, intron 1 of 1) intron (NR_104130, intron 1 of 1) 10224 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 145-70 chrX 52858393 52858684 + 0.75 NA Intergenic L1M5|LINE|L1 8763 NM_130776 170626 Hs.43879 NM_130776 ENSG00000171402 XAGE3 CT12.3a|CT12.3b|GAGED4|PLAC6|XAGE-3|pp9012 X antigen family member 3 protein-coding 132.5-8 chr10 20657877 20658274 + 0.75 NA Intergenic LTR73|LTR|ERV1 106105 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 122.75-15 chr11 97802878 97803041 + 0.75 NA Intergenic Intergenic -1217990 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 126.25-61 chr3 120519943 120520271 + 0.75 NA Intergenic Intergenic -69115 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 113-5 chr1 70786929 70787216 + 0.75 NA TTS (NR_125938) TTS (NR_125938) 80619 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 169.75-25 chr14 75018860 75019122 + 0.75 NA intron (NM_014381, intron 10 of 11) intron (NM_014381, intron 10 of 11) 16070 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 117-48 chr20 42164119 42164426 + 0.75 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -521211 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 127.5-119 chr7 78131456 78131772 + 0.75 NA intron (NM_001301128, intron 17 of 20) (TGTT)n|Simple_repeat|Simple_repeat -215628 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 132.5-14 chr11 76448574 76448953 + 0.75 NA intron (NM_001300942, intron 2 of 21) intron (NM_001300942, intron 2 of 21) 3738 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 205.25-5 chr10 64887531 64887968 + 0.75 NA Intergenic L1PB2|LINE|L1 36769 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 165.5-65 chr4 47145912 47146245 + 0.75 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 114511 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 130-49 chr3 55779589 55779803 + 0.75 NA intron (NR_132749, intron 13 of 17) L1M5|LINE|L1 72898 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 123.5-38 chr15 61944192 61944454 + 0.75 NA intron (NM_001018088, intron 45 of 81) L1PA16|LINE|L1 116124 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 197-50 chr8 137906085 137906540 + 0.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 177233 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 162.75-66 chr7 78654225 78654713 + 0.75 NA intron (NM_001301128, intron 2 of 20) MER103C|DNA|hAT-Charlie 307227 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 127-100 chr8 143960169 143960386 + 0.75 NA intron (NM_000445, intron 2 of 32) AluSp|SINE|Alu -6443 NM_201379 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 134-8 chr1 113891361 113891713 + 0.75 NA intron (NR_037864, intron 3 of 4) intron (NR_037864, intron 3 of 4) -3956 NM_001010922 440603 Hs.123106 NM_001010922 ENSG00000188761 BCL2L15 Bfk|C1orf178 BCL2 like 15 protein-coding 140.5-96 chr6 72341329 72341576 + 0.75 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -25294 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 113.5-46 chr16 31045948 31046155 + 0.75 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 12493 NM_004604 6810 Hs.83734 NM_004604 ENSG00000103496 STX4 STX4A|p35-2 syntaxin 4 protein-coding 146-56 chr7 28188778 28189021 + 0.75 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -8104 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 131-29 chr2 24438224 24438537 + 0.75 NA Intergenic Charlie1|DNA|hAT-Charlie -52874 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 144.25-9 chr10 32947248 32947549 + 0.75 NA intron (NM_002211, intron 1 of 15) L2|LINE|L2 10496 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 203.5-39 chr4 109258521 109258919 + 0.75 NA intron (NM_198721, intron 3 of 36) MIR|SINE|MIR 43938 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 123-3 chr1 95980349 95980557 + 0.75 NA Intergenic L1ME1|LINE|L1 -11615 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 127.5-73 chr21 29672990 29673357 + 0.75 NA intron (NM_001320621, intron 1 of 13) intron (NM_001320621, intron 1 of 13) -75002 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 206.25-39 chr8 99727447 99727933 + 0.75 NA intron (NM_017890, intron 39 of 61) THE1B|LTR|ERVL-MaLR 166017 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 200.75-10 chr12 117014371 117014807 + 0.75 NA intron (NM_153348, intron 8 of 10) L1MEf|LINE|L1 -27252 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 119.25-77 chr5 86533062 86533259 + 0.75 NA Intergenic Intergenic -84781 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 118.75-73 chr3 171376676 171376939 + 0.75 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 83598 NM_001161563 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 143.5-31 chr14 19956115 19956373 + 0.75 NA Intergenic Intergenic -19275 NM_001005486 81127 Hs.554583 NM_001005486 ENSG00000169488 OR4K15 OR14-20|OR4K15Q olfactory receptor family 4 subfamily K member 15 protein-coding 117.25-26 chr13 104614516 104614760 + 0.75 NA Intergenic Intergenic -851229 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 132.75-35 chr14 33365875 33366240 + 0.75 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -342880 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 149-38 chr3 125089361 125089654 + 0.75 NA intron (NM_001195483, intron 11 of 12) intron (NM_001195483, intron 11 of 12) -33510 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 170.75-45 chr2 173182648 173182978 + 0.75 NA intron (NM_133646, intron 3 of 11) intron (NM_133646, intron 3 of 11) 99223 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 118.75-38 chr16 83702695 83702910 + 0.75 NA intron (NM_001220489, intron 9 of 12) L2b|LINE|L2 101174 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 114.5-101 chr7 106652130 106652330 + 0.75 NA Intergenic L2c|LINE|L2 8928 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 153-14 chr19 34774439 34774814 + 0.75 NA Intergenic MLT1J1|LTR|ERVL-MaLR -1411 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 178-36 chr3 179595175 179595622 + 0.75 NA intron (NM_020409, intron 4 of 6) intron (NM_020409, intron 4 of 6) 9240 NM_020409 57129 Hs.283734 NM_020409 ENSG00000136522 MRPL47 CGI-204|L47mt|MRP-L47|NCM1 mitochondrial ribosomal protein L47 protein-coding 227-15 chr2 44234622 44235011 + 0.75 NA TTS (NM_177968) TTS (NM_177968) -40664 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 185.5-52 chr3 192863135 192863535 + 0.75 NA intron (NM_178496, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 54521 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 120.5-28 chr13 77088197 77088584 + 0.75 NA TTS (NR_046716) TTS (NR_046716) 12876 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 234.75-24 chr2 225182691 225183128 + 0.75 NA Intergenic Intergenic -140441 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 162.25-33 chr5 5673337 5673668 + 0.75 NA Intergenic L1M4|LINE|L1 250825 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 133.75-69 chr6 154403644 154403956 + 0.75 NA 3' UTR (NM_173515, exon 13 of 13) 3' UTR (NM_173515, exon 13 of 13) 30273 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 129.25-72 chr8 68359787 68360037 + 0.75 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -28421 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 131-75 chr7 140378616 140378800 + 0.75 NA intron (NM_032295, intron 3 of 11) AluSc|SINE|Alu 19822 NR_156491 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 125.5-62 chr2 20605645 20605884 + 0.75 NA Intergenic L1MB5|LINE|L1 -13216 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 173.5-94 chr7 28801889 28802251 + 0.75 NA intron (NM_001011666, intron 3 of 6) AluSc|SINE|Alu 115937 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 181.5-7 chr11 13128683 13128994 + 0.75 NA Intergenic L2b|LINE|L2 119522 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 197.25-33 chr19 17354794 17355222 + 0.75 NA intron (NM_031310, intron 5 of 5) AluSx1|SINE|Alu 17455 NM_001128855 84705 Hs.334885 NM_032620 ENSG00000130299 GTPBP3 COXPD23|GTPBG3|MSS1|MTGP1|THDF1 GTP binding protein 3, mitochondrial protein-coding 139-18 chr14 45794248 45794597 + 0.75 NA Intergenic Intergenic -78820 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 122.25-84 chr6 65276409 65276573 + 0.75 NA intron (NM_001292009, intron 12 of 43) ERVL-B4-int|LTR|ERVL -24927 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 167.25-26 chr14 56936374 56936771 + 0.75 NA Intergenic Intergenic 123414 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 201.5-7 chr1 240399220 240399577 + 0.75 NA intron (NM_020066, intron 15 of 17) L1M4b|LINE|L1 212757 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 175.5-83 chr8 134536067 134536447 + 0.75 NA intron (NM_020863, intron 11 of 15) L3|LINE|CR1 -61814 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 171-50 chr7 9410235 9410628 + 0.75 NA Intergenic Intergenic -223839 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 216.75-6 chr1 221375323 221375920 + 0.75 NA Intergenic Intergenic -39325 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 116.25-16 chr11 92491887 92492096 + 0.75 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 139895 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 154.25-18 chr11 108841306 108841652 + 0.75 NA intron (NM_004398, intron 15 of 17) intron (NM_004398, intron 15 of 17) 176410 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 174-53 chr9 25756477 25756855 + 0.75 NA Intergenic MLT1-int|LTR|ERVL-MaLR -23390 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 180.25-27 chr2 32844349 32844687 + 0.75 NA intron (NR_027098, intron 2 of 5) THE1B|LTR|ERVL-MaLR 19085 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 195.75-48 chr5 166458596 166458973 + 0.75 NA Intergenic Intergenic 467586 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 158.25-25 chr2 65124937 65125308 + 0.75 NA intron (NM_015543, intron 1 of 3) intron (NM_015543, intron 1 of 3) 4984 NM_004161 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 115.25-48 chr2 114721409 114721714 + 0.75 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 111987 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 121.25-22 chr14 76588446 76588714 + 0.75 NA Intergenic FRAM|SINE|Alu -172888 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 158.5-15 chr10 46287626 46287878 + 0.75 NA intron (NM_001278688, intron 1 of 16) intron (NM_001278688, intron 1 of 16) 755 NM_001354208 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 186.5-20 chr14 58025640 58025974 + 0.75 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 126406 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 120.75-8 chr10 50524173 50524371 + 0.75 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 99684 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 113-54 chr20 33333841 33334100 + 0.75 NA Intergenic Intergenic 50756 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 153.5-51 chr2 211192580 211192816 + 0.75 NA Intergenic L1MC4a|LINE|L1 575127 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 147.75-13 chr11 34194251 34194511 + 0.75 NA intron (NM_145804, intron 3 of 16) intron (NM_145804, intron 3 of 16) 88752 NM_001144030 55226 Hs.577281 NM_024662 ENSG00000135372 NAT10 ALP|Kre33|NET43 N-acetyltransferase 10 protein-coding 118.75-94 chr8 10912310 10912527 + 0.75 NA intron (NM_173683, intron 2 of 2) intron (NM_173683, intron 2 of 2) 72392 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 135.25-93 chr8 95950104 95950348 + 0.75 NA Intergenic AluSq2|SINE|Alu -1878 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 238-21 chr21 29529228 29529732 + 0.75 NA Intergenic Intergenic 33433 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 165-25 chr17 33036160 33036675 + 0.75 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 43566 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 135-46 chr22 31467017 31467296 + 0.75 NA intron (NM_019843, intron 4 of 18) L1MC|LINE|L1 22400 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 127.25-90 chr7 51932931 51933118 + 0.75 NA Intergenic L1MA8|LINE|L1 -539768 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 186-23 chr19 29154201 29154588 + 0.75 NA Intergenic GA-rich|Low_complexity|Low_complexity 58757 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 169-20 chr17 53819739 53820221 + 0.75 NA Intergenic Intergenic -2947 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 137.25-8 chr1 219803558 219803927 + 0.75 NA Intergenic Intergenic 124909 NM_018713 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 173.25-48 chr4 30315650 30316030 + 0.75 NA Intergenic AluJo|SINE|Alu -404529 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 202.5-37 chr4 124837344 124837734 + 0.75 NA Intergenic L1MA3|LINE|L1 -124807 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 178.75-5 chr10 99088927 99089240 + 0.75 NA intron (NM_021828, intron 3 of 11) L1PB1|LINE|L1 146792 NM_001166245 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 115-5 chr1 90198259 90198439 + 0.75 NA Intergenic Intergenic 203239 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 204.75-37 chr5 26056378 26056739 + 0.75 NA Intergenic L2a|LINE|L2 865605 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 114.5-81 chr5 33453329 33453554 + 0.75 NA intron (NM_152295, intron 4 of 18) intron (NM_152295, intron 4 of 18) 12665 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 217-35 chr9 28485643 28486100 + 0.75 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 233434 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 116.75-39 chr2 13034279 13034642 + 0.75 NA Intergenic L1ME2|LINE|L1 -27447 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 133.5-2 chr1 21866375 21866689 + 0.75 NA intron (NM_005529, intron 33 of 96) intron (NM_005529, intron 33 of 96) 54267 NM_001013693 401944 Hs.745158 NM_001013693 ENSG00000187942 LDLRAD2 - low density lipoprotein receptor class A domain containing 2 protein-coding 181.25-31 chr2 153197970 153198335 + 0.75 NA Intergenic L1MA4A|LINE|L1 280610 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 151-36 chr2 71202535 71202873 + 0.75 NA intron (NM_020459, intron 1 of 3) intron (NM_020459, intron 1 of 3) 24399 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 179.75-46 chr5 152802791 152803201 + 0.75 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 169353 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 143-74 chr8 75780066 75780339 + 0.75 NA Intergenic Intergenic 240234 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 138-27 chr16 77178346 77178678 + 0.75 NA Intergenic Intergenic -12678 NM_014940 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 162.75-40 chr20 11877086 11877430 + 0.75 NA Intergenic L1ME3A|LINE|L1 -6543 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 203.75-34 chr5 151423811 151424156 + 0.75 NA Intergenic Intergenic -13063 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 112.75-62 chr3 89420172 89420502 + 0.75 NA intron (NM_005233, intron 11 of 16) intron (NM_005233, intron 11 of 16) 312716 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 212-10 chr12 56743375 56743886 + 0.75 NA intron (NM_000946, intron 6 of 12) MIRc|SINE|MIR 8693 NM_000946 5557 Hs.534339 NM_000946 ENSG00000198056 PRIM1 p49 DNA primase subunit 1 protein-coding 148-49 chr4 121231188 121231583 + 0.75 NA Intergenic Intergenic -3902 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 226.5-20 chr18 3323899 3324312 + 0.75 NA Intergenic Intergenic 26454 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 117.5-71 chr4 150919568 150919956 + 0.75 NA intron (NM_001367550, intron 5 of 56) intron (NM_001367550, intron 5 of 56) 95505 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 117.75-43 chr2 194789928 194790228 + 0.75 NA Intergenic Intergenic 59483 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 190.5-10 chr10 78713360 78713705 + 0.75 NA Intergenic Intergenic 353916 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 180.25-4 chr1 198265809 198266091 + 0.75 NA intron (NM_133494, intron 5 of 9) MIRb|SINE|MIR 108952 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 195.5-72 chr5 44412613 44412973 + 0.75 NA non-coding (NR_108034, exon 3 of 3) non-coding (NR_108034, exon 3 of 3) -23373 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 120-52 chr2 233937666 233937847 + 0.75 NA intron (NM_024080, intron 4 of 25) intron (NM_024080, intron 4 of 25) 20383 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 158.75-21 chr14 68279408 68279701 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 349233 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 188.75-58 chr9 117778560 117778968 + 0.75 NA Intergenic Intergenic 74361 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 162.25-16 chr16 73940190 73940406 + 0.75 NA Intergenic L1ME3D|LINE|L1 275223 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 158-47 chr4 86663712 86663926 + 0.75 NA intron (NM_080685, intron 2 of 47) intron (NM_080685, intron 2 of 47) 69504 NM_080684 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 178.25-39 chr3 159975973 159976308 + 0.75 NA intron (NR_108088, intron 9 of 9) intron (NR_108088, intron 9 of 9) -12695 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 135.5-98 chr7 33135332 33135580 + 0.75 NA intron (NM_001348044, intron 1 of 18) L1MB7|LINE|L1 5892 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 121.25-37 chr2 155200251 155200527 + 0.75 NA Intergenic L1MB7|LINE|L1 501694 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 118.5-58 chr2 29675211 29675421 + 0.75 NA intron (NM_004304, intron 3 of 28) L1ME3G|LINE|L1 -199939 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 161.5-85 chr8 104637034 104637397 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -48191 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 154-41 chr2 105928705 105929119 + 0.75 NA Intergenic Intergenic 77065 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 127.75-64 chr4 67688645 67688881 + 0.75 NA intron (NM_018227, intron 2 of 32) intron (NM_018227, intron 2 of 32) 12392 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 114.75-25 chr13 79716763 79716968 + 0.75 NA Intergenic CR1-3_Croc|LINE|CR1 -87521 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 120.25-3 chr1 183743900 183744153 + 0.75 NA intron (NM_001297669, intron 3 of 18) intron (NM_001297669, intron 3 of 18) -61094 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 182-23 chr2 64163017 64163334 + 0.75 NA Intergenic Intergenic -18755 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 125-47 chr18 63859352 63859587 + 0.75 NA Intergenic L1MA3|LINE|L1 -28236 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 228-3 chr10 20973591 20973974 + 0.75 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -76180 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 152.25-14 chr11 102858812 102859197 + 0.75 NA Intergenic L1MEc|LINE|L1 -15395 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 150.5-96 chrX 73507895 73508198 + 0.75 NA Intergenic L1MDa|LINE|L1 55039 NR_029423 139201 Hs.586477 NR_029423 ENSG00000269904 MAP2K4P1 - mitogen-activated protein kinase kinase 4 pseudogene 1 pseudo 164.75-54 chr5 25108188 25108506 + 0.75 NA Intergenic Intergenic 82309 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 168.25-54 chr5 127306480 127306951 + 0.75 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 15919 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 136.25-66 chr5 166496421 166496703 + 0.75 NA Intergenic L1MC5a|LINE|L1 429808 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 173.25-9 chr10 117635359 117635792 + 0.75 NA Intergenic Intergenic -90507 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 118.25 chr1 53020110 53020396 + 0.75 NA intron (NM_001007100, intron 1 of 4) intron (NM_001007100, intron 1 of 4) 5315 NM_001007250 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 219.75-6 chr11 86274734 86275218 + 0.75 NA intron (NM_001308007, intron 10 of 12) L1MD1|LINE|L1 -3357 NR_106813 102465452 NR_106813 ENSG00000283744 MIR6755 hsa-mir-6755 microRNA 6755 ncRNA 137.5-34 chr15 53108700 53108985 + 0.75 NA Intergenic Intergenic -7523 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 116.25-4 chr1 118685555 118685772 + 0.75 NA Intergenic L1M5|LINE|L1 302680 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 150.25-23 chr14 47769255 47769577 + 0.75 NA intron (NR_039996, intron 2 of 2) L1MC1|LINE|L1 -8312 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 194.75-41 chr6 135542243 135542561 + 0.75 NA intron (NR_152845, intron 2 of 4) L1PA14|LINE|L1 44601 NR_152845 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 155.25-57 chr5 128145112 128145512 + 0.75 NA intron (NM_001046, intron 10 of 26) intron (NM_001046, intron 10 of 26) 61546 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 143.5-14 chr10 119767417 119767772 + 0.75 NA intron (NM_014937, intron 2 of 19) L1MEg|LINE|L1 41544 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 127.25-52 chr2 177224096 177224452 + 0.75 NA TTS (NM_001330248) TTS (NM_001330248) 11480 NR_138470 220988 Hs.516539 NM_194247 ENSG00000170144 HNRNPA3 2610510D13Rik|D10S102|FBRNP|HNRPA3 heterogeneous nuclear ribonucleoprotein A3 protein-coding 220-13 chr16 13065884 13066292 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 164490 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 118.75-32 chr14 67592413 67592609 + 0.75 NA intron (NM_004569, intron 3 of 3) intron (NM_004569, intron 3 of 3) 7757 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 152-57 chr5 167615791 167616256 + 0.75 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 42364 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 119-66 chr6 151844769 151845116 + 0.75 NA intron (NM_001291230, intron 3 of 8) intron (NM_001291230, intron 3 of 8) 35835 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 145.5-48 chr2 75476659 75477015 + 0.75 NA Intergenic Intergenic -47231 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 234.5-12 chr13 82790895 82791274 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 1091309 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 232-32 chrX 31169560 31170039 + 0.75 NA intron (NM_000109, intron 73 of 78) intron (NM_000109, intron 73 of 78) 97155 NM_004015 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 118.25-34 chr15 38598592 38598824 + 0.75 NA Intergenic Intergenic -33894 NM_001306086 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 113.75-33 chr14 38931361 38931576 + 0.75 NA Intergenic MIR|SINE|MIR -14586 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 142.75-84 chr8 79992272 79992632 + 0.75 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 37807 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 308.25-12 chr8 136185158 136185987 + 0.75 NA Intergenic Intergenic -345226 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 116.25-63 chr4 39159635 39159976 + 0.75 NA Intergenic Intergenic -22724 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 113.25-65 chr2 34726546 34726832 + 0.75 NA Intergenic Intergenic 49132 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 141.75-19 chr13 39921731 39921988 + 0.75 NA Intergenic L1MA5|LINE|L1 -257724 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 221.5-31 chr3 110821656 110822123 + 0.75 NA Intergenic AluSx1|SINE|Alu 248070 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 160.5-23 chr15 53662236 53662550 + 0.75 NA intron (NM_182758, intron 14 of 19) intron (NM_182758, intron 14 of 19) 97270 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 150-23 chr15 60386275 60386528 + 0.75 NA intron (NM_004039, intron 1 of 12) intron (NM_004039, intron 1 of 12) 11585 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 167.5-14 chr11 1791691 1791961 + 0.75 NA Intergenic L1MEc|LINE|L1 -27899 NM_001909 1509 Hs.654447 NM_001909 ENSG00000117984 CTSD CLN10|CPSD|HEL-S-130P cathepsin D protein-coding 144-25 chr14 51634155 51634476 + 0.75 NA intron (NM_001042481, intron 2 of 14) L2c|LINE|L2 17429 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 126-60 chr3 67514411 67514816 + 0.75 NA intron (NM_001177599, intron 6 of 10) intron (NM_001177599, intron 6 of 10) 140001 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 123.25-36 chr18 79878825 79879080 + 0.75 NA intron (NM_012283, intron 1 of 1) intron (NM_012283, intron 1 of 1) 15284 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 188.75-36 chr4 168547998 168548399 + 0.75 NA intron (NM_001166108, intron 2 of 21) intron (NM_001166108, intron 2 of 21) 51146 NM_001166108 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 196-32 chr5 24370006 24370370 + 0.75 NA Intergenic Intergenic 274790 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 125.25-59 chr4 84742335 84742678 + 0.75 NA intron (NM_014991, intron 37 of 67) MamRep1879|DNA|hAT-Tip100? 159379 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 128.75-15 chr11 62249515 62249900 + 0.75 NA Intergenic Intergenic 7468 NM_006551 10647 Hs.204096 NM_006551 ENSG00000124935 SCGB1D2 LIPB|LPHB|LPNB secretoglobin family 1D member 2 protein-coding 113-78 chr5 39427074 39427335 + 0.75 NA Intergenic Intergenic -1971 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 143.5-7 chr10 2029865 2030210 + 0.75 NA Intergenic Intergenic -15689 NR_040253 282980 Hs.576810 NR_040253 ENSG00000234962 LINC00700 - long intergenic non-protein coding RNA 700 ncRNA 165.5-91 chr8 127498738 127498997 + 0.75 NA Intergenic L2b|LINE|L2 -16728 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 165.75-21 chr14 83870589 83870971 + 0.75 NA Intergenic Intergenic 1228148 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 148.5-30 chr15 57248440 57248680 + 0.75 NA intron (NM_207038, intron 13 of 19) intron (NM_207038, intron 13 of 19) 29130 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 129.25-78 chr8 139343250 139343504 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR 359746 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 130.5-62 chr3 98780958 98781205 + 0.75 NA intron (NM_001271147, intron 6 of 9) L1PA7|LINE|L1 17774 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 172.75-50 chr9 36405194 36405629 + 0.75 NA Intergenic L1M5|LINE|L1 -4213 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 139.75-31 chr15 61629409 61629677 + 0.75 NA Intergenic LFSINE_Vert|SINE|tRNA -100375 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 268.75-19 chr20 57728037 57728515 + 0.75 NA Intergenic Intergenic -16740 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 201.5-64 chr8 108038924 108039257 + 0.75 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 42849 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 125.5-76 chr3 19661558 19661851 + 0.75 NA Intergenic Intergenic 272513 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 118.5-15 chr10 7437923 7438172 + 0.75 NA Intergenic AluSx|SINE|Alu -26561 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 128.25-91 chr9 122318715 122318949 + 0.75 NA intron (NR_144421, intron 8 of 8) MIRb|SINE|MIR -51701 NM_001271368 5742 Hs.201978 NM_000962 ENSG00000095303 PTGS1 COX1|COX3|PCOX1|PES-1|PGG/HS|PGHS-1|PGHS1|PHS1|PTGHS prostaglandin-endoperoxide synthase 1 protein-coding 147.5-84 chr9 32938266 32938693 + 0.75 NA Intergenic Intergenic 63097 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 136.75-6 chr1 236546346 236546665 + 0.75 NA intron (NM_201543, intron 10 of 10) intron (NM_201543, intron 10 of 10) -21997 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 156.25-9 chr11 15357176 15357613 + 0.75 NA Intergenic MER21A|LTR|ERVL 208292 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 204.75-34 chr4 34387440 34387871 + 0.75 NA Intergenic Intergenic -117908 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 170-35 chr3 194976449 194976731 + 0.75 NA Intergenic Intergenic -117998 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 116.5-86 chr4 103397753 103398051 + 0.75 NA Intergenic Intergenic -27140 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 191.25-40 chr22 40254160 40254477 + 0.75 NA intron (NM_015088, intron 3 of 20) intron (NM_015088, intron 3 of 20) 76393 NM_015088 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 140.5-10 chr11 16349377 16349664 + 0.75 NA intron (NM_001367872, intron 3 of 16) AluSz|SINE|Alu 7026 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 128.5-90 chr6 151697594 151697932 + 0.75 NA intron (NM_001122742, intron 1 of 9) MIR3|SINE|MIR 7267 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 122.25-38 chr18 6434440 6434701 + 0.75 NA Intergenic Intergenic -19311 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 124.75-25 chr13 28737996 28738200 + 0.75 NA Intergenic AluJr|SINE|Alu -19085 NM_181785 283537 Hs.117167 NM_181785 ENSG00000139508 SLC46A3 FKSG16 solute carrier family 46 member 3 protein-coding 184.5-81 chr8 122896836 122897238 + 0.75 NA intron (NM_001362797, intron 3 of 4) MIRc|SINE|MIR 115382 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 119.5-107 chr6 133697156 133697481 + 0.75 NA intron (NR_109982, intron 4 of 8) L1MC5|LINE|L1 -123829 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 117.75-63 chr5 23748497 23748723 + 0.75 NA Intergenic Intergenic -202738 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 171-60 chr8 128046501 128046860 + 0.75 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -2472 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 126.75-92 chr8 31419580 31419821 + 0.75 NA Intergenic L1M6|LINE|L1 -220052 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 134.25-66 chr5 17875223 17875573 + 0.75 NA intron (NR_134286, intron 5 of 7) L2a|LINE|L2 68124 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 197.75-18 chr2 30438531 30438929 + 0.75 NA Intergenic Intergenic -8516 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 121.5-71 chr20 35477478 35477754 + 0.75 NA intron (NM_007186, intron 16 of 34) L2c|LINE|L2 17633 NM_001318219 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 180.75 chr1 9781585 9781903 + 0.75 NA intron (NM_001009566, intron 1 of 18) intron (NM_001009566, intron 1 of 18) 42782 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 168-6 chr1 147894139 147894450 + 0.75 NA Intergenic Intergenic -8501 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 147.5-34 chr16 78328477 78328721 + 0.75 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 228945 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 114-4 chr1 101580417 101580689 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR 256716 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 123.75-17 chr10 67732128 67732442 + 0.75 NA Intergenic Intergenic -36090 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 182.25-7 chr10 118723944 118724332 + 0.75 NA intron (NM_153810, intron 3 of 8) L1MEg|LINE|L1 30832 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 185.25-31 chr20 57518724 57519207 + 0.75 NA intron (NM_001269052, intron 3 of 3) intron (NM_001269052, intron 3 of 3) 5902 NM_001269041 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 133.25-20 chr12 105472322 105472694 + 0.75 NA Intergenic L1ME2|LINE|L1 141817 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 132.25-22 chr12 29695384 29695653 + 0.75 NA intron (NM_001367875, intron 5 of 19) AluSc5|SINE|Alu 88424 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 117.5-69 chr4 39566162 39566435 + 0.75 NA intron (NM_174921, intron 3 of 4) L2a|LINE|L2 38459 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 202.75-36 chr8 134445737 134446331 + 0.75 NA Intergenic Intergenic -152037 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 204.75-51 chrX 76917300 76917683 + 0.75 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 1869 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 135.75-94 chr7 56230447 56230868 + 0.75 NA Intergenic Intergenic -114240 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 142.25-4 chr1 160119566 160119822 + 0.75 NA intron (NM_000702, intron 1 of 22) intron (NM_000702, intron 1 of 22) 3935 NM_000702 477 Hs.34114 NM_000702 ENSG00000018625 ATP1A2 FHM2|MHP2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding 158.25-6 chr1 233413872 233414224 + 0.75 NA Intergenic MLT2B4|LTR|ERVL 86324 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 195.75-36 chr4 13579412 13579775 + 0.75 NA intron (NM_148894, intron 22 of 25) L1ME4a|LINE|L1 -31769 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 117.75-57 chr3 173610819 173611142 + 0.75 NA intron (NM_001365928, intron 3 of 6) L2a|LINE|L2 26546 NM_001365933 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 147-42 chr2 182185221 182185536 + 0.75 NA intron (NM_001258313, intron 13 of 13) intron (NM_001258313, intron 13 of 13) 56685 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 177.5-71 chrX 125374155 125374495 + 0.75 NA Intergenic L1PA13|LINE|L1 54454 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 146-16 chr16 62231633 62231911 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -195334 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 138.25-89 chr8 103615639 103616019 + 0.75 NA intron (NM_001348497, intron 1 of 22) L1PA14|LINE|L1 -113919 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 226.5-3 chr1 53864273 53864750 + 0.75 NA intron (NR_036639, intron 9 of 11) intron (NR_036639, intron 9 of 11) 25286 NM_018982 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 164-63 chr8 77982832 77983103 + 0.75 NA Intergenic Intergenic 532270 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 133.5-117 chr8 122187833 122188076 + 0.75 NA Intergenic Intergenic 380690 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 120-5 chr1 65294687 65294895 + 0.75 NA intron (NM_014787, intron 1 of 18) MER33|DNA|hAT-Charlie -14752 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 129-41 chr20 56840008 56840287 + 0.75 NA Intergenic MER66A|LTR|ERV1 210841 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 123.25-10 chr10 61838383 61838673 + 0.75 NA Intergenic Intergenic -63171 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 118.75-77 chr4 47217655 47218024 + 0.75 NA intron (NM_000812, intron 4 of 8) L1MA4|LINE|L1 186272 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 181.75-30 chr4 26302997 26303325 + 0.75 NA Intergenic AluSz6|SINE|Alu -16549 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 122.25-6 chr10 11840140 11840370 + 0.75 NA intron (NM_153256, intron 1 of 3) intron (NM_153256, intron 1 of 3) 16899 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 144.75-79 chr7 43731756 43732082 + 0.75 NA Intergenic Intergenic -2378 NM_001350925 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 130-76 chr7 44150397 44150631 + 0.75 NA intron (NM_033507, intron 4 of 9) LTR40b|LTR|ERVL -3881 NM_001354801 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 130.5-70 chr5 34542776 34543037 + 0.75 NA Intergenic Zaphod3|DNA|hAT-Tip100 -113422 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 142-36 chr20 43466334 43466667 + 0.75 NA Intergenic Intergenic 8604 NR_034009 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 195-50 chr6 115196606 115197028 + 0.75 NA Intergenic Intergenic 447018 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 123.5-51 chr2 78831827 78832087 + 0.75 NA Intergenic Intergenic -193745 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 154.25-63 chr8 95639204 95639482 + 0.75 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 309005 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 142.25-11 chr10 129769411 129769601 + 0.75 NA 3' UTR (NM_002412, exon 5 of 5) 3' UTR (NM_002412, exon 5 of 5) 73868 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 202.25-6 chr1 231608817 231609179 + 0.75 NA intron (NR_034037, intron 1 of 1) AluSx|SINE|Alu 3092 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 170.75-75 chr8 127905157 127905508 + 0.75 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 43391 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 153.75-60 chr5 13172568 13172878 + 0.75 NA Intergenic L1MA9|LINE|L1 -139837 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 131.25-95 chrX 98012926 98013247 + 0.75 NA Intergenic L1ME2|LINE|L1 -448551 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 186.25-17 chr14 20175898 20176175 + 0.75 NA Intergenic Intergenic -21300 NM_001005503 390439 Hs.554582 NM_001005503 ENSG00000196832 OR11G2 OR14-34 olfactory receptor family 11 subfamily G member 2 protein-coding 119.25-89 chr7 75841827 75842117 + 0.75 NA Intergenic MLT2C2|LTR|ERVL -18600 NM_001371193 136.25-19 chr12 33732269 33732665 + 0.75 NA Intergenic L1M5|LINE|L1 -290029 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 120.25-24 chr13 44327512 44327796 + 0.75 NA Intergenic Intergenic -45996 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 128-24 chr19 49392422 49392667 + 0.75 NA intron (NM_144688, intron 2 of 19) MIR3|SINE|MIR 4295 NM_144688 147872 Hs.662085 NM_144688 ENSG00000161609 CCDC155 KASH5 coiled-coil domain containing 155 protein-coding 125.25-53 chr3 70464598 70464871 + 0.75 NA Intergenic Intergenic -152096 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 140.75-46 chr4 136637507 136637809 + 0.75 NA Intergenic HUERS-P2-int|LTR|ERV1 -556098 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 176.5-48 chr2 138656921 138657270 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X 123295 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 209-39 chr8 132445316 132445658 + 0.75 NA intron (NM_004519, intron 1 of 14) L2c|LINE|L2 1775 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 152.75-41 chr3 16753741 16754020 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -131075 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 126.5-118 chr8 104714429 104714753 + 0.75 NA Intergenic Intergenic -125567 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 253.25-8 chr11 113593521 113594114 + 0.75 NA Intergenic Intergenic 112491 NM_001288750 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 144-11 chr10 89831693 89831936 + 0.75 NA intron (NR_038382, intron 2 of 3) HAL1|LINE|L1 2321 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 215-22 chr2 33847342 33847781 + 0.75 NA intron (NR_126403, intron 1 of 5) MER77|LTR|ERVL -119344 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 196.75-4 chr1 208382343 208382785 + 0.75 NA Intergenic AluSp|SINE|Alu -138180 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 163 chr1 34692008 34692292 + 0.75 NA Intergenic Intergenic -22456 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 146.5-33 chr15 101335432 101335695 + 0.75 NA intron (NR_132373, intron 1 of 2) L1ME4b|LINE|L1 1126 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 187.5-5 chr1 117147816 117148178 + 0.75 NA intron (NM_024626, intron 4 of 5) intron (NM_024626, intron 4 of 5) -26248 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 150.25-32 chr16 49260513 49260841 + 0.75 NA Intergenic L1MC3|LINE|L1 21161 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 120-65 chr4 10547921 10548106 + 0.75 NA intron (NM_052964, intron 8 of 18) L1MA10|LINE|L1 -90587 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 130.75-25 chr15 67129673 67129898 + 0.75 NA intron (NM_001145102, intron 1 of 8) MER33|DNA|hAT-Charlie 4069 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 189-42 chr5 95740722 95741250 + 0.75 NA intron (NM_014899, intron 3 of 11) L1MC4|LINE|L1 -8884 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 205.75-9 chr12 103045947 103046365 + 0.75 NA Intergenic Intergenic -87715 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 114.25-80 chr4 165686058 165686380 + 0.75 NA intron (NR_121676, intron 2 of 5) intron (NR_121676, intron 2 of 5) 1580 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 159.5-33 chr18 5110229 5110570 + 0.75 NA Intergenic Intergenic 29217 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 151.25-55 chr8 67538741 67539107 + 0.75 NA intron (NM_020361, intron 2 of 10) AluY|SINE|Alu 195090 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 160-27 chr20 1024068 1024408 + 0.75 NA Intergenic L2a|LINE|L2 -21927 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 152.5-8 chr10 13114920 13115218 + 0.75 NA intron (NM_001008213, intron 6 of 15) (AT)n|Simple_repeat|Simple_repeat 14906 NM_001008212 10133 Hs.332706 NM_021980 ENSG00000123240 OPTN ALS12|FIP2|GLC1E|HIP7|HYPL|NRP|TFIIIA-INTP optineurin protein-coding 124-61 chr5 169901443 169901724 + 0.75 NA intron (NM_001346304, intron 1 of 3) L2a|LINE|L2 78912 NM_001129891 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 138.75-88 chrX 134745098 134745444 + 0.75 NA intron (NM_001316887, intron 1 of 3) MLT1L|LTR|ERVL-MaLR -11635 NM_001316888 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 191-43 chr5 133208503 133208908 + 0.75 NA intron (NM_015082, intron 14 of 15) AluSx|SINE|Alu 156692 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 188.25-50 chr6 12410952 12411231 + 0.75 NA Intergenic Intergenic 120730 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 151.75-74 chr8 15996103 15996505 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 189968 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 166.25-34 chr2 160964255 160964615 + 0.75 NA Intergenic Intergenic -172520 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 174.25-13 chr10 102677899 102678296 + 0.75 NA intron (NM_004311, intron 5 of 5) intron (NM_004311, intron 5 of 5) 33602 NM_001345950 81603 Hs.336810 NM_030912 ENSG00000171206 TRIM8 GERP|RNF27 tripartite motif containing 8 protein-coding 153.25-19 chr15 71500560 71500811 + 0.75 NA intron (NM_024817, intron 6 of 16) L1M3|LINE|L1 -46551 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 182.5-19 chr15 57614659 57614952 + 0.75 NA intron (NM_001018100, intron 2 of 12) intron (NM_001018100, intron 2 of 12) 22901 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 156.25-19 chr14 53702942 53703266 + 0.75 NA Intergenic Intergenic 245380 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 148-64 chr8 100639113 100639412 + 0.75 NA intron (NM_152628, intron 2 of 13) L1MC3|LINE|L1 10403 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 130.25-30 chr15 52188922 52189095 + 0.75 NA intron (NM_016194, intron 1 of 12) intron (NM_016194, intron 1 of 12) 2384 NM_016194 10681 Hs.155090 NM_006578 ENSG00000069966 GNB5 GB5|IDDCA|LADCI G protein subunit beta 5 protein-coding 128.5-29 chr15 97125839 97126037 + 0.75 NA Intergenic L1M4b|LINE|L1 342503 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 118-9 chr10 17533362 17533538 + 0.75 NA Intergenic MER97d|DNA|hAT-Tip100 -78855 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 126.75-97 chr9 93309618 93309841 + 0.75 NA intron (NM_006648, intron 27 of 28) L1M5|LINE|L1 36574 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 166.25 chr1 9889876 9890103 + 0.75 NA intron (NM_020248, intron 1 of 5) intron (NM_020248, intron 1 of 5) 20280 NM_001012329 56998 Hs.463759 NM_020248 ENSG00000178585 CTNNBIP1 ICAT catenin beta interacting protein 1 protein-coding 168.5-57 chr4 159572752 159573151 + 0.75 NA Intergenic ERV24_Prim-int|LTR|ERV1 204833 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 228-9 chr12 53613113 53613704 + 0.75 NA intron (NR_073163, intron 1 of 12) Charlie1a|DNA|hAT-Charlie 12582 NM_001366563 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 155.25-32 chr2 33161833 33162154 + 0.75 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 27396 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 120.25-68 chr7 134148591 134148752 + 0.75 NA intron (NM_001365700, intron 5 of 15) AluSz6|SINE|Alu 21331 NM_144648 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 120-54 chr20 16156890 16157079 + 0.75 NA Intergenic Intergenic -171102 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 214.5-56 chr7 39501006 39501441 + 0.75 NA Intergenic Intergenic -65181 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 188.25-32 chr3 22255360 22255771 + 0.75 NA Intergenic Intergenic 298426 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 146-43 chr5 10826210 10826509 + 0.75 NA Intergenic LTR50|LTR|ERVL -65125 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 154-33 chr2 12732302 12732546 + 0.75 NA intron (NM_021643, intron 2 of 2) intron (NM_021643, intron 2 of 2) -4943 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 202.25-22 chr20 12510927 12511358 + 0.75 NA Intergenic Intergenic 425821 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 196.5-51 chr3 140585889 140586177 + 0.75 NA Intergenic Intergenic -77244 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 114.25-29 chr12 105487925 105488125 + 0.75 NA Intergenic LTR16E2|LTR|ERVL 157334 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 132.25-52 chr20 11043051 11043291 + 0.75 NA Intergenic Intergenic 16627 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 131.5-7 chr1 237940920 237941166 + 0.75 NA Intergenic Intergenic -50121 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 183.75-9 chr11 80409908 80410290 + 0.75 NA Intergenic L1PA17|LINE|L1 352704 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 128-53 chr5 131414144 131414399 + 0.75 NA Intergenic Intergenic 150262 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 122.25-83 chr5 117266401 117266611 + 0.75 NA Intergenic L1MEg|LINE|L1 -149006 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 114-18 chr11 121726211 121726413 + 0.75 NA Intergenic Intergenic 273998 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 168-3 chr1 96207953 96208317 + 0.75 NA Intergenic Intergenic 165990 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 193.25-16 chr2 7182018 7182451 + 0.75 NA Intergenic L2a|LINE|L2 -104354 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 162-10 chr14 59978979 59979276 + 0.75 NA intron (NR_075071, intron 15 of 32) AluJr4|SINE|Alu 59414 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 119.25-38 chr18 10888624 10888886 + 0.75 NA intron (NM_022068, intron 4 of 51) intron (NM_022068, intron 4 of 51) -129106 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 171.25-15 chr14 54174093 54174383 + 0.75 NA Intergenic Intergenic -217347 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 172.25-63 chr5 55509987 55510391 + 0.75 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) -1263 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 164-49 chr5 151113097 151113445 + 0.75 NA intron (NM_001193544, intron 19 of 24) AluSq|SINE|Alu -25586 NM_001252390 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 152.75-16 chr14 36674154 36674498 + 0.75 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 16758 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 182.5-74 chr8 134429308 134429584 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -168625 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 127.25-2 chr1 76011279 76011490 + 0.75 NA promoter-TSS (NR_125939) promoter-TSS (NR_125939) 60 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 141.5-71 chr22 48162506 48162893 + 0.75 NA Intergenic L1MEd|LINE|L1 -111665 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 117.75-25 chr15 56298603 56298891 + 0.75 NA Intergenic L2|LINE|L2 -53665 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 180.25-6 chr10 43626574 43627002 + 0.75 NA Intergenic Intergenic -2029 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 166.75-60 chr9 20636501 20636835 + 0.75 NA Intergenic Intergenic -14169 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 160.75-50 chr5 60170176 60170450 + 0.75 NA intron (NM_001349243, intron 2 of 16) MIRb|SINE|MIR 202350 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 154-14 chr12 10176045 10176331 + 0.75 NA intron (NM_001079815, intron 1 of 5) intron (NM_001079815, intron 1 of 5) -2844 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 164-15 chr12 92048676 92049134 + 0.75 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 92808 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 151-29 chr18 48565839 48566134 + 0.75 NA intron (NM_001142397, intron 2 of 12).2 intron (NM_001142397, intron 2 of 12).2 26955 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 120.75-63 chr3 51295433 51295756 + 0.75 NA intron (NM_004947, intron 27 of 52) L1M4|LINE|L1 -89697 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 200-32 chr4 78906531 78906872 + 0.75 NA intron (NM_198892, intron 15 of 15) intron (NM_198892, intron 15 of 15) 32737 NR_146465 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 150.75-62 chr6 143449255 143449567 + 0.75 NA intron (NM_182503, intron 1 of 5) intron (NM_182503, intron 1 of 5) 1284 NM_182503 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 125.75-80 chr9 69756072 69756356 + 0.75 NA intron (NM_001099666, intron 1 of 7) intron (NM_001099666, intron 1 of 7) 3797 NR_159516 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 152.25-33 chr2 102374583 102375003 + 0.75 NA intron (NM_001282399, intron 4 of 10) intron (NM_001282399, intron 4 of 10) 18510 NM_001282399 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 154.25-68 chr9 34786145 34786530 + 0.75 NA Intergenic Intergenic 52249 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 197.5-8 chr10 73831877 73832238 + 0.75 NA intron (NM_001367518, intron 13 of 20) intron (NM_001367518, intron 13 of 20) -20237 NR_160744 8509 Hs.654758 NM_003635 ENSG00000166507 NDST2 HSST2|N-HSST 2|NST2 N-deacetylase and N-sulfotransferase 2 protein-coding 176.75-45 chr5 78745399 78745882 + 0.75 NA Intergenic Intergenic -96868 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 143.25-81 chr9 110370415 110370661 + 0.75 NA intron (NM_153366, intron 46 of 47) intron (NM_153366, intron 46 of 47) -32654 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 198.25-7 chr13 42611140 42611572 + 0.75 NA Intergenic Intergenic 37204 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 166.5-25 chr12 65755947 65756295 + 0.75 NA Intergenic Intergenic -68339 NM_003484 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 140.25-69 chr5 86484660 86484900 + 0.75 NA Intergenic L2a|LINE|L2 -133161 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 180-29 chr17 59496266 59496531 + 0.75 NA intron (NR_110813, intron 2 of 2) LTR33|LTR|ERVL 30459 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 128.25-46 chr3 29525377 29525675 + 0.75 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 244214 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 114.75-49 chr2 84771490 84771792 + 0.75 NA intron (NM_001370, intron 64 of 76) L1M4|LINE|L1 109443 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 129.75-2 chr1 111177346 111177592 + 0.75 NA intron (NM_001007794, intron 5 of 8) Tigger4|DNA|TcMar-Tigger 23177 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 224-24 chr4 182565426 182565890 + 0.75 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 322256 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 163.75-35 chr2 188468414 188468714 + 0.75 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 171072 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 203.5-36 chr4 77317066 77317490 + 0.75 NA Intergenic Intergenic 160071 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 116.75-6 chr10 19639649 19639889 + 0.75 NA intron (NM_001142308, intron 36 of 39) intron (NM_001142308, intron 36 of 39) 88781 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 174.25-59 chr8 123626635 123627065 + 0.75 NA Intergenic AluY|SINE|Alu 26951 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 167.5-26 chr15 96488874 96489130 + 0.75 NA Intergenic Intergenic 155237 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 150.75-68 chr7 87206465 87206771 + 0.75 NA intron (NR_138030, intron 1 of 3) MER44B|DNA|TcMar-Tigger 13114 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 143.75-25 chr11 116319118 116319451 + 0.75 NA Intergenic L1MEc|LINE|L1 -320138 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 131-17 chr12 58440391 58440621 + 0.75 NA Intergenic Intergenic -151196 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 118.25-72 chr4 184360368 184360575 + 0.75 NA Intergenic Intergenic -6494 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 159.75-5 chr1 247160620 247160962 + 0.75 NA intron (NM_003431, intron 1 of 3) MER68|LTR|ERVL 11226 NM_001297569 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 127-17 chr11 99930940 99931153 + 0.75 NA intron (NM_001243270, intron 6 of 23) intron (NM_001243270, intron 6 of 23) 374901 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 168.25-8 chr10 47101206 47101664 + 0.75 NA Intergenic Intergenic 189713 NR_148024 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 209.5-11 chr17 60712307 60712746 + 0.75 NA intron (NM_001330413, intron 5 of 25) MIRb|SINE|MIR 34675 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 126.75-34 chr17 27170035 27170298 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -80925 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 174.75-55 chr8 111463584 111463867 + 0.75 NA intron (NR_146282, intron 2 of 3) AluSg|SINE|Alu 87086 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 138.25-23 chr13 54712945 54713195 + 0.75 NA Intergenic L1MA5A|LINE|L1 -401022 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 137-4 chr1 97852863 97853093 + 0.75 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 56057 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 166-30 chr18 71982104 71982389 + 0.75 NA Intergenic Intergenic -200020 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 153.5-67 chr3 102125183 102125542 + 0.75 NA Intergenic Intergenic -38343 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 122-72 chr8 114860979 114861342 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 806853 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 148-20 chr14 56041184 56041436 + 0.75 NA Intergenic Intergenic -77101 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 116.25-99 chr9 68861065 68861265 + 0.75 NA intron (NM_003558, intron 4 of 15) intron (NM_003558, intron 4 of 15) 81100 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 133-8 chr10 121863118 121863426 + 0.75 NA intron (NM_001001976, intron 8 of 11) AluSg4|SINE|Alu 64759 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 141.75-64 chr4 177931203 177931636 + 0.75 NA intron (NR_028342, intron 2 of 5) L1MB7|LINE|L1 -23483 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 169.25-38 chr3 191382632 191382875 + 0.75 NA exon (NM_174908, exon 9 of 11) exon (NM_174908, exon 9 of 11) -42771 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 149-22 chr18 73466462 73466868 + 0.75 NA Intergenic L1MA7|LINE|L1 141724 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 176-19 chr18 63133874 63134261 + 0.75 NA intron (NM_000633, intron 2 of 2) L1ME4a|LINE|L1 185313 NM_000633 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 142.5-14 chr10 79320477 79320715 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -26873 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 159.5-19 chr12 71856474 71856869 + 0.75 NA intron (NR_027449, intron 1 of 15) L3|LINE|CR1 -5688 NR_024072 729633 Hs.716256 NR_024072 MRS2P2 - MRS2 pseudogene 2 pseudo 122-81 chrX 107310039 107310203 + 0.75 NA Intergenic L1PA17|LINE|L1 103489 NM_001169154 139212 Hs.128836 NM_173494 ENSG00000080572 PIH1D3 CILD36|CXorf41|DNAAF6|NYSAR97|TWISTER PIH1 domain containing 3 protein-coding 157.25-31 chr18 7793586 7793956 + 0.75 NA intron (NM_002845, intron 2 of 30) LTR1A2|LTR|ERV1 226455 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 151.5-47 chr22 26603862 26604199 + 0.75 NA intron (NM_001887, intron 4 of 5) intron (NM_001887, intron 4 of 5) -13898 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 147-69 chr6 36708509 36708864 + 0.75 NA intron (NM_001257357, intron 2 of 13) LTR37-int|LTR|ERV1 10860 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 125.5-56 chr18 7511053 7511302 + 0.75 NA Intergenic MER41B|LTR|ERV1 -50171 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 216.25-37 chr8 30522618 30523022 + 0.75 NA intron (NM_001008710, intron 5 of 8) intron (NM_001008710, intron 5 of 8) -115760 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 223.75-26 chr9 97547982 97548325 + 0.75 NA intron (NM_001166116, intron 3 of 9) L2a|LINE|L2 46487 NM_003275 7111 Hs.404289 NM_003275 ENSG00000136842 TMOD1 D9S57E|ETMOD|TMOD tropomodulin 1 protein-coding 142.25-35 chr2 41775011 41775260 + 0.75 NA Intergenic Intergenic -102420 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 119-41 chr2 148348159 148348392 + 0.75 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -296476 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 206.5-31 chr20 32241401 32241732 + 0.75 NA Intergenic AluJo|SINE|Alu 3771 NR_031726 100302183 NR_031726 ENSG00000284125 MIR1825 MIRN1825|hsa-mir-1825 microRNA 1825 ncRNA 177-43 chr4 73443364 73443666 + 0.75 NA intron (NM_001354717, intron 6 of 14) intron (NM_001354717, intron 6 of 14) 7294 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 189.5-72 chrX 124612011 124612372 + 0.75 NA intron (NM_014253, intron 11 of 30) intron (NM_014253, intron 11 of 30) 265909 NM_001114937 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 139-12 chr12 29551126 29551418 + 0.75 NA intron (NM_001367875, intron 12 of 19) intron (NM_001367875, intron 12 of 19) -51579 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 123-17 chr13 61983465 61983644 + 0.75 NA Intergenic L1M5|LINE|L1 45994 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 131.25-42 chr2 38986307 38986549 + 0.75 NA intron (NM_005633, intron 22 of 22) intron (NM_005633, intron 22 of 22) -26084 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 168.5-60 chr5 37164543 37164812 + 0.75 NA intron (NM_023073, intron 36 of 51) intron (NM_023073, intron 36 of 51) -84369 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 128.5-18 chr12 42264671 42265024 + 0.75 NA Intergenic L1MD|LINE|L1 -26479 NM_001320080 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 184-47 chr6 114173265 114173680 + 0.75 NA intron (NR_125845, intron 6 of 9) A-rich|Low_complexity|Low_complexity -110595 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 130.75-32 chr18 33778550 33778762 + 0.75 NA Intergenic Intergenic 200437 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 177.25-46 chr6 84742287 84742705 + 0.75 NA intron (NM_001080508, intron 6 of 7) intron (NM_001080508, intron 6 of 7) 22102 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 121-39 chr2 163473790 163473977 + 0.75 NA Intergenic Intergenic 262125 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 161-48 chr3 193377190 193377573 + 0.75 NA intron (NM_198505, intron 1 of 29) MER33|DNA|hAT-Charlie 1372 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 131.5-81 chr6 126076764 126077006 + 0.75 NA intron (NR_146803, intron 16 of 16) intron (NR_146803, intron 16 of 16) 90345 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 131-21 chr15 55919156 55919429 + 0.75 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) -2161 NM_198400 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 128.5-62 chr3 108582149 108582492 + 0.75 NA intron (NM_020890, intron 3 of 20) intron (NM_020890, intron 3 of 20) 7118 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 135.25-94 chr8 118328199 118328418 + 0.75 NA intron (NM_001101676, intron 4 of 4) L2c|LINE|L2 -216489 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 127-13 chr11 11537445 11537718 + 0.75 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 84424 NM_001363464 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 138.25-78 chr7 7305976 7306398 + 0.75 NA Intergenic Intergenic 51033 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 123.75-51 chr2 12887761 12888026 + 0.75 NA Intergenic MLT1F|LTR|ERVL-MaLR 119120 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 118.75-29 chr14 51378360 51378722 + 0.75 NA Intergenic Intergenic 18594 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 141.5-19 chr11 39029642 39029867 + 0.75 NA Intergenic L1MC4|LINE|L1 380896 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 197.75 chr1 84694358 84694674 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -4048 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 138-8 chr10 53438615 53438918 + 0.75 NA Intergenic Intergenic -667066 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 258.25-6 chr15 87038692 87039269 + 0.75 NA Intergenic L1MEf|LINE|L1 -50554 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 174.75-47 chr6 7807641 7807998 + 0.75 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 81720 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 126.5-94 chr5 109632322 109632654 + 0.75 NA Intergenic L4_B_Mam|LINE|RTE-X -56878 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 173.5-99 chr7 81127684 81128094 + 0.75 NA Intergenic L1PB4|LINE|L1 -205500 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 139.25-60 chr3 185780361 185780710 + 0.75 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) -12631 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 157-10 chr11 33543907 33544229 + 0.75 NA exon (NM_012194, exon 2 of 21) exon (NM_012194, exon 2 of 21) 156672 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 262.5-3 chr1 104557107 104557719 + 0.75 NA Intergenic HERVL-int|LTR|ERVL 484390 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 172.75-7 chr10 124788957 124789366 + 0.75 NA intron (NM_001304468, intron 2 of 5) intron (NM_001304468, intron 2 of 5) 2726 NM_001304467 399818 Hs.720819 NM_212554 ENSG00000203791 EEF1AKMT2 C10orf138|Efm4|METTL10 EEF1A lysine methyltransferase 2 protein-coding 116-32 chr17 75364739 75364973 + 0.75 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 40822 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 140-62 chr8 83681234 83681575 + 0.75 NA Intergenic L1PREC2|LINE|L1 277646 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 223.75-27 chr9 102970296 102970713 + 0.75 NA Intergenic L1MA7|LINE|L1 -24829 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 169-5 chr1 227729782 227730075 + 0.75 NA intron (NR_136654, intron 1 of 3) intron (NR_136654, intron 1 of 3) 1410 NR_136654 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 144-46 chr3 84067554 84067861 + 0.75 NA Intergenic HUERS-P1-int|LTR|ERV1 801868 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 171.5-66 chr5 3552261 3552602 + 0.75 NA Intergenic L1PA11|LINE|L1 -16337 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 125-69 chr3 181477717 181478090 + 0.75 NA intron (NR_075091, intron 3 of 7) L1PA11|LINE|L1 -35417 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 126.25-58 chr3 33148394 33148626 + 0.75 NA TTS (NM_006371) TTS (NM_006371) 34552 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 164-62 chr8 69042436 69042665 + 0.75 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 61640 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 204.5-27 chr2 67205199 67205628 + 0.75 NA intron (NR_038844, intron 2 of 7) intron (NR_038844, intron 2 of 7) -7995 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 169.5-58 chr4 59417396 59417688 + 0.75 NA Intergenic Intergenic 403969 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 166.25-33 chr2 142713992 142714367 + 0.75 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -163485 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 156.25-13 chr11 130483940 130484282 + 0.75 NA Intergenic Intergenic 35137 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 124.75-59 chr3 31496983 31497257 + 0.75 NA Intergenic Intergenic -35805 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 132.25-78 chr6 35551858 35552110 + 0.75 NA Intergenic AluJo|SINE|Alu -39088 NM_001289395 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 226.5-43 chr5 179691008 179691438 + 0.75 NA Intergenic AluSx1|SINE|Alu -7204 NM_001363994 821 Hs.567968 NM_001746 ENSG00000127022 CANX CNX|IP90|P90 calnexin protein-coding 153.5-64 chr3 47862694 47863003 + 0.75 NA intron (NM_002375, intron 15 of 18) L1MC5a|LINE|L1 13293 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 208-5 chr10 96855578 96856072 + 0.75 NA intron (NM_001170766, intron 2 of 8) AluSp|SINE|Alu 22880 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 156.75-60 chr3 70878849 70879162 + 0.75 NA Intergenic Intergenic 185919 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 194.25-20 chr18 13154370 13154779 + 0.75 NA Intergenic L1MA4|LINE|L1 -64186 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 126-56 chr22 25933528 25933876 + 0.75 NA intron (NM_001318245, intron 34 of 43) L1M5|LINE|L1 191514 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 132.75-23 chr11 19261057 19261339 + 0.75 NA Intergenic AluYb8|SINE|Alu -19543 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 195.25-24 chr2 96660804 96661121 + 0.75 NA intron (NM_001293083, intron 10 of 52) intron (NM_001293083, intron 10 of 52) 18198 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 129.25-40 chr2 47614077 47614462 + 0.75 NA Intergenic Intergenic -43938 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 252-11 chr16 78852794 78853386 + 0.75 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 747647 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 125.25-25 chr15 57230416 57230679 + 0.75 NA intron (NM_207040, intron 1 of 12) intron (NM_207040, intron 1 of 12) 11117 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 127-77 chr5 37853635 37853935 + 0.75 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 13347 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 119.25-95 chr8 54919401 54919691 + 0.75 NA Intergenic Intergenic -182482 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 128.25-29 chr17 48487155 48487369 + 0.75 NA Intergenic Intergenic 42429 NR_110804 101927166 Hs.149244 NR_110804 LOC101927166 - uncharacterized LOC101927166 ncRNA 121.5-99 chr5 109777192 109777360 + 0.75 NA intron (NM_002372, intron 8 of 21) L1ME3|LINE|L1 87910 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 166-24 chr14 86213078 86213481 + 0.75 NA Intergenic Intergenic 278601 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 166.25-43 chr4 32830710 32831021 + 0.75 NA Intergenic Intergenic 479827 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 193.5-64 chr5 120530347 120530785 + 0.75 NA promoter-TSS (NM_001308088) promoter-TSS (NM_001308088) -898 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 114.5-70 chr3 181030548 181030773 + 0.75 NA Intergenic L1M4|LINE|L1 -26020 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 171.5-22 chr12 123185450 123185898 + 0.75 NA intron (NR_103517, intron 13 of 23) AluJo|SINE|Alu 47467 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 128.5-15 chr12 9280213 9280608 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie -3247 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 204.5-22 chr17 71012821 71013132 + 0.75 NA Intergenic Intergenic 189203 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 125.25-72 chr6 34571970 34572376 + 0.75 NA Intergenic Intergenic -15840 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 129-67 chr6 70522617 70522890 + 0.75 NA intron (NM_001331004, intron 13 of 20) intron (NM_001331004, intron 13 of 20) -44177 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 157.5-25 chr14 36800352 36800621 + 0.75 NA intron (NM_001171170, intron 3 of 10) L1MB3|LINE|L1 142918 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 166.5-12 chr1 231971004 231971363 + 0.75 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 45349 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 209-28 chr6 10487424 10487876 + 0.75 NA Intergenic LTR12C|LTR|ERV1 -33685 NM_145649 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 228-37 chr6 83303534 83303859 + 0.75 NA intron (NM_002395, intron 6 of 13) intron (NM_002395, intron 6 of 13) -109796 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 193.25-7 chr10 112994131 112994490 + 0.75 NA intron (NM_001367943, intron 4 of 14) L1MB7|LINE|L1 44060 NM_001198530 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 167.25-3 chr1 50782833 50783314 + 0.75 NA intron (NM_007051, intron 4 of 18) L1MB1|LINE|L1 177194 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 164.5-64 chr3 193125373 193125747 + 0.75 NA Intergenic Intergenic -115662 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 129 chr1 45331755 45332096 + 0.75 NA intron (NM_012222, intron 11 of 15) intron (NM_012222, intron 11 of 15) 5030 NM_032756 84842 Hs.162717 NM_032756 ENSG00000186603 HPDL 4-HPPD-L|GLOXD1 4-hydroxyphenylpyruvate dioxygenase like protein-coding 179.5-55 chr2 152007167 152007584 + 0.75 NA intron (NM_000726, intron 2 of 13) L1MB3|LINE|L1 -33397 NM_001330114 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 125.25-33 chr18 60526334 60526664 + 0.75 NA Intergenic Intergenic -153724 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 176.75 chr1 40281721 40282195 + 0.75 NA intron (NM_005857, intron 7 of 9) MIRb|SINE|MIR 23722 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 119.25-3 chr1 55374883 55375181 + 0.75 NA Intergenic Intergenic 149391 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 117-16 chr11 19201389 19201590 + 0.75 NA intron (NM_003476, intron 1 of 5) intron (NM_003476, intron 1 of 5) 494 NM_001369404 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 141-14 chr11 34857670 34857915 + 0.75 NA Intergenic Intergenic -58338 NM_001135024 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 206.75-7 chr12 8796543 8796831 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR -25934 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 141-74 chr7 46323723 46323990 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 373266 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 145.5-7 chr1 195102827 195103121 + 0.75 NA Intergenic Intergenic 985741 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 172.75-14 chr18 3378989 3379485 + 0.75 NA Intergenic AluSz|SINE|Alu -28678 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 120.25-79 chr8 140870068 140870427 + 0.75 NA intron (NM_001352737, intron 3 of 32) L1MD|LINE|L1 130757 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 228-6 chr10 126613074 126613609 + 0.75 NA intron (NM_001350922, intron 2 of 8) AluJr|SINE|Alu 57169 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 122.25 chr1 48550690 48550916 + 0.75 NA intron (NM_001323575, intron 11 of 12) MIRb|SINE|MIR -78595 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 136.75-49 chr2 114208644 114208849 + 0.75 NA Intergenic L1MA4|LINE|L1 -228762 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 133.25-61 chr4 101513803 101514061 + 0.75 NA Intergenic Intergenic 166155 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 147.5-52 chr20 12968453 12968708 + 0.75 NA Intergenic MIRc|SINE|MIR -16061 NR_109868 101929486 Hs.548761 NR_109868 ENSG00000233048 LINC01722 - long intergenic non-protein coding RNA 1722 ncRNA 142.5-71 chr4 145074537 145074756 + 0.75 NA intron (NM_001256706, intron 3 of 4) intron (NM_001256706, intron 3 of 4) 22736 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 198.25-15 chr16 55193521 55193916 + 0.75 NA Intergenic Charlie7|DNA|hAT-Charlie -130841 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 146-8 chr11 82791451 82791835 + 0.75 NA Intergenic Intergenic -57779 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 144.25-36 chr2 15969804 15970049 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -27493 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 191-50 chr9 109886534 109886964 + 0.75 NA intron (NM_053016, intron 3 of 6) intron (NM_053016, intron 3 of 6) 106551 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 120.75-33 chr15 68802180 68802416 + 0.75 NA promoter-TSS (NR_036197) promoter-TSS (NR_036197) -373 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 124.25-78 chr8 57741055 57741277 + 0.75 NA Intergenic Intergenic -4983 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 112.75-75 chr6 56309797 56310083 + 0.75 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -62360 NR_134851 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 122.5-96 chr8 136362868 136363157 + 0.75 NA Intergenic Intergenic -167786 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 180.25-67 chr8 121775283 121775560 + 0.75 NA Intergenic Intergenic -133981 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 117-38 chr2 120480911 120481195 + 0.75 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -14704 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 142.25-68 chr7 104132296 104132574 + 0.75 NA intron (NM_002553, intron 13 of 13) intron (NM_002553, intron 13 of 13) 75578 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 179.25-21 chr2 98110025 98110340 + 0.75 NA intron (NR_144297, intron 2 of 18) L1MDa|LINE|L1 23015 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 123-67 chr8 118711941 118712179 + 0.75 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -90097 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 231-43 chr9 131355472 131356046 + 0.75 NA Intergenic AluSq2|SINE|Alu 66036 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 113.75-34 chr14 39668698 39669062 + 0.75 NA Intergenic L2|LINE|L2 -236380 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 189.25-46 chr8 104854323 104854750 + 0.75 NA Intergenic Intergenic -265512 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 178.75-61 chr9 8694491 8694786 + 0.75 NA intron (NM_130392, intron 1 of 30) intron (NM_130392, intron 1 of 30) 39308 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 172.25-71 chr7 46815561 46815853 + 0.75 NA Intergenic AluSq2|SINE|Alu -118585 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 150.75-80 chr9 83639430 83639811 + 0.75 NA intron (NM_001001551, intron 3 of 4) L1MEd|LINE|L1 16477 NR_046421 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 126.75-54 chr21 43374497 43374836 + 0.75 NA Intergenic Intergenic -12317 NR_131902 101928399 Hs.517319 NR_131902 ENSG00000237989 LINC01679 TCONS_00029157 long intergenic non-protein coding RNA 1679 ncRNA 256.75-8 chr22 35003266 35003750 + 0.75 NA Intergenic Intergenic -5592 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 176.75-24 chr2 95081644 95082129 + 0.75 NA Intergenic L1ME1|LINE|L1 39671 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 147-23 chr13 23026682 23027042 + 0.75 NA Intergenic Intergenic -110493 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 136-3 chr1 111370093 111370338 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 19636 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 137.75-8 chr10 70160180 70160490 + 0.75 NA intron (NM_020150, intron 4 of 6) intron (NM_020150, intron 4 of 6) 10179 NM_001142648 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 162.25-47 chr8 55540166 55540544 + 0.75 NA 3' UTR (NM_052898, exon 3 of 3) 3' UTR (NM_052898, exon 3 of 3) -19377 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 122.25-86 chr7 26739745 26739966 + 0.75 NA intron (NM_003930, intron 5 of 12) intron (NM_003930, intron 5 of 12) 101984 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 219-8 chr14 66100125 66100742 + 0.75 NA Intergenic MER4B|LTR|ERV1 -385938 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 195.75-8 chr10 126068414 126068780 + 0.75 NA intron (NM_001288974, intron 12 of 18) intron (NM_001288974, intron 12 of 18) -95324 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 139.25-24 chr12 122949594 122949935 + 0.75 NA intron (NM_001243014, intron 4 of 11) intron (NM_001243014, intron 4 of 11) 16699 NM_001243014 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 119 chr1 48512407 48512666 + 0.75 NA Intergenic Intergenic -40328 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 144.5-87 chr5 46252034 46252311 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -555792 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 219.75-17 chr2 60543867 60544325 + 0.75 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 9402 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 115-65 chr6 49676981 49677258 + 0.75 NA Intergenic LTR26|LTR|ERV1 36424 NM_001142408 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 128.75-80 chr6 70006804 70007115 + 0.75 NA intron (NM_001858, intron 11 of 50) L1M4a1|LINE|L1 140403 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 127.25-54 chr20 10522616 10522785 + 0.75 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 87395 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 179.5-65 chr3 60226954 60227449 + 0.75 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -146292 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 146.75-32 chr3 182149037 182149415 + 0.75 NA Intergenic Intergenic 196862 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 138.25-62 chr3 172352038 172352354 + 0.75 NA intron (NM_001135095, intron 21 of 25) L2a|LINE|L2 96260 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 258-20 chr22 34025880 34026500 + 0.75 NA Intergenic Intergenic -103302 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 155.25-42 chr22 49752638 49752964 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 71530 NM_001349942 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 178.5-5 chr1 232218230 232218523 + 0.75 NA Intergenic Intergenic 292542 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 114.75-13 chr10 66076136 66076352 + 0.75 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 504819 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 194.5-49 chr3 109350074 109350422 + 0.75 NA Intergenic Intergenic -12676 NM_018189 55211 Hs.317659 NM_018189 ENSG00000121570 DPPA4 2410091M23Rik developmental pluripotency associated 4 protein-coding 218.75-43 chr9 130477785 130478206 + 0.75 NA intron (NM_054012, intron 9 of 14) MIRb|SINE|MIR 33034 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 134.25-17 chr13 77772513 77772869 + 0.75 NA Intergenic L1MEg|LINE|L1 31472 NM_001366666 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 132-31 chr2 32582618 32582925 + 0.75 NA intron (NM_016252, intron 66 of 73) AluSx|SINE|Alu -7953 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 174.5-69 chr5 60625919 60626296 + 0.75 NA intron (NM_001145208, intron 7 of 9) L1MB7|LINE|L1 74059 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 186.75-26 chr19 51109104 51109587 + 0.75 NA promoter-TSS (NM_145232) promoter-TSS (NM_145232) -936 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 164.75-33 chr2 15519795 15520120 + 0.75 NA intron (NR_052013, intron 9 of 50) intron (NR_052013, intron 9 of 50) 41377 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 181.25-53 chr6 150915413 150915771 + 0.75 NA intron (NM_001350486, intron 8 of 27) AluSx1|SINE|Alu 49106 NM_001350491 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 264.5-26 chr5 124042720 124043322 + 0.75 NA Intergenic Intergenic 395499 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 141-38 chr2 100252619 100252938 + 0.75 NA Intergenic Intergenic 44524 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 140-61 chr7 100633035 100633221 + 0.75 NA intron (NM_003227, intron 5 of 17) CpG 522 NM_001206855 7036 Hs.544932 NM_003227 ENSG00000106327 TFR2 HFE3|TFRC2 transferrin receptor 2 protein-coding 192.5-36 chr22 20088785 20089165 + 0.75 NA intron (NM_022720, intron 3 of 13) AluJr|SINE|Alu 2917 NR_031706 100302197 NR_031706 ENSG00000284464 MIR1306 MIRN1306|hsa-mir-1306|mir-1306 microRNA 1306 ncRNA 139-40 chr20 35231129 35231390 + 0.75 NA intron (NM_006690, intron 1 of 8) intron (NM_006690, intron 1 of 8) 4569 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 140.5-94 chr6 41595598 41595941 + 0.75 NA intron (NM_001012427, intron 14 of 16) AluSq2|SINE|Alu -2954 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 126.75-16 chr11 81302757 81303105 + 0.75 NA Intergenic Intergenic -540128 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 225.5-13 chr10 103159866 103160222 + 0.75 NA intron (NM_001351187, intron 3 of 21) L1MB7|LINE|L1 -6223 NM_001351192 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 146.75-69 chr9 91870113 91870495 + 0.75 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 79924 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 185.5-42 chr2 222377889 222378193 + 0.75 NA Intergenic L1MA3|LINE|L1 -45947 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 145.25-68 chr6 53052846 53053079 + 0.75 NA intron (NM_014920, intron 1 of 13) Charlie8|DNA|hAT-Charlie 8840 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 211.75-5 chr10 76481157 76481509 + 0.75 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -406711 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 114.25-65 chr2 216816674 216816906 + 0.75 NA Intergenic Intergenic 43274 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 132.5-39 chr16 76872317 76872532 + 0.75 NA Intergenic Intergenic 3488 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 134.25-31 chr17 52561739 52561969 + 0.75 NA Intergenic Intergenic 171332 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 137.25-64 chr5 91756102 91756370 + 0.75 NA Intergenic Intergenic -372919 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 146-65 chr9 30509227 30509610 + 0.75 NA Intergenic MIRc|SINE|MIR -100964 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 132.25-13 chr11 9225292 9225597 + 0.75 NA intron (NR_145966, intron 1 of 21) L3|LINE|CR1 39882 NR_145966 23258 Hs.501857 NM_015213 ENSG00000184014 DENND5A EIEE49|RAB6IP1 DENN domain containing 5A protein-coding 237.25-29 chr8 89032160 89032607 + 0.75 NA Intergenic L1PA16|LINE|L1 -704900 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 146.5-68 chr4 86890519 86890784 + 0.75 NA intron (NM_001369889, intron 2 of 3) intron (NM_001369889, intron 2 of 3) 1771 NM_001369888 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 127-65 chr3 143430458 143430627 + 0.75 NA intron (NM_173653, intron 12 of 15) intron (NM_173653, intron 12 of 15) 88296 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 152-68 chr9 2817789 2818186 + 0.75 NA intron (NM_014878, intron 13 of 17) intron (NM_014878, intron 13 of 17) 26108 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 140.5-83 chr5 88836220 88836557 + 0.75 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) -9200 NM_001364342 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 122.5-102 chr9 31736338 31736574 + 0.75 NA Intergenic Intergenic -354966 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 192.25-5 chr1 100435019 100435469 + 0.75 NA intron (NM_001319212, intron 5 of 13) L2c|LINE|L2 82738 NM_001319210 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 119.5-76 chr3 8057474 8057797 + 0.75 NA Intergenic L2a|LINE|L2 -41328 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 163-7 chr10 93419287 93419555 + 0.75 NA intron (NM_013451, intron 5 of 53) AluSx|SINE|Alu 62913 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 113-33 chr16 87339060 87339271 + 0.75 NA intron (NM_024735, intron 5 of 8) intron (NM_024735, intron 5 of 8) 21656 NR_135180 101928659 Hs.667450 NR_135180 ENSG00000270006 LOC101928659 - uncharacterized LOC101928659 ncRNA 124.75-43 chr2 44857316 44857566 + 0.75 NA Intergenic Intergenic 81447 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 154.75 chr1 183183659 183184023 + 0.75 NA Intergenic Intergenic -2423 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 138-4 chr1 213302600 213302819 + 0.75 NA Intergenic Intergenic 251468 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 142.25-25 chr14 82405519 82405879 + 0.75 NA Intergenic L1ME3|LINE|L1 -236933 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 156-33 chr16 85637004 85637350 + 0.75 NA intron (NM_014615, intron 2 of 15) L1MB7|LINE|L1 23855 NM_001278184 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 175.5-82 chr8 127217534 127217987 + 0.75 NA intron (NR_108049, intron 1 of 1) intron (NR_108049, intron 1 of 1) 1508 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 149.5-55 chr2 112433935 112434176 + 0.75 NA promoter-TSS (NM_001164463) promoter-TSS (NM_001164463) -410 NM_001164463 727851 Hs.469630 NM_001164463 ENSG00000169629 RGPD8 RANBP2L1|RGP8|RanBP2alpha RANBP2 like and GRIP domain containing 8 protein-coding 149-53 chr7 114278122 114278378 + 0.75 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) -136565 NM_148898 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 136-23 chr16 4218030 4218333 + 0.75 NA intron (NM_001323667, intron 1 of 6) intron (NM_001323667, intron 1 of 6) 23899 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 124.75-79 chr6 110167322 110167660 + 0.75 NA intron (NM_001024935, intron 1 of 9) Tigger3b|DNA|TcMar-Tigger 12179 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 122.25-76 chr5 22445591 22445921 + 0.75 NA intron (NM_004061, intron 2 of 14) LTR78|LTR|ERV1 -231906 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 121.5-22 chr11 83108985 83109186 + 0.75 NA Intergenic L2a|LINE|L2 37019 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 130.25-83 chr8 78570143 78570384 + 0.75 NA intron (NM_181839, intron 1 of 2) L1MDa|LINE|L1 -11760 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 176-30 chr3 72500268 72500557 + 0.75 NA Intergenic Intergenic -53789 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 134.5-8 chr1 215949663 215949947 + 0.75 NA intron (NM_206933, intron 37 of 71) intron (NM_206933, intron 37 of 71) -122660 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 201.5-42 chr4 141004837 141005166 + 0.75 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 128468 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 154.25-6 chr1 203671317 203671595 + 0.75 NA intron (NM_001365784, intron 1 of 20) FLAM_C|SINE|Alu 43519 NM_001365784 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 155.25-59 chr5 158070318 158070729 + 0.75 NA Intergenic Intergenic -211378 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 234.5-4 chr10 60063088 60063589 + 0.75 NA intron (NM_001204403, intron 38 of 43) intron (NM_001204403, intron 38 of 43) 77678 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 118.75-30 chr14 55431719 55432011 + 0.75 NA intron (NM_199047, intron 4 of 6) MER3|DNA|hAT-Charlie 8680 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 168.75-7 chr11 114344415 114344743 + 0.75 NA Intergenic Intergenic 35460 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 147.25-8 chr11 111021893 111022197 + 0.75 NA Intergenic MIRb|SINE|MIR 75273 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 171.75-2 chr1 92796927 92797236 + 0.75 NA Intergenic AluSq|SINE|Alu -4671 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 180.25-8 chr10 87934381 87934821 + 0.75 NA intron (NM_001304717, intron 6 of 9) intron (NM_001304717, intron 6 of 9) 70976 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 125-41 chr17 76375417 76375619 + 0.75 NA Intergenic Intergenic -7686 NM_001355139 8877 Hs.68061 NM_021972 ENSG00000176170 SPHK1 SPHK sphingosine kinase 1 protein-coding 171-30 chr20 15022761 15023110 + 0.75 NA intron (NM_001351663, intron 5 of 17) U6|snRNA|snRNA -93417 NR_072988 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 163.75-27 chr18 66000874 66001226 + 0.75 NA Intergenic Intergenic 250038 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 194.5-10 chr10 109014683 109015038 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 908386 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 113.25-9 chr1 205475532 205475792 + 0.75 NA Intergenic LTR16C|LTR|ERVL -19576 NR_103783 101669762 Hs.666219 NR_103783 BLACAT1 LINC00912|linc-UBC1|onco-lncRNA-30 bladder cancer associated transcript 1 ncRNA 143-4 chr10 13567237 13567483 + 0.75 NA Intergenic Intergenic -19605 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 149.5-76 chr4 33071377 33071628 + 0.75 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR 720464 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 191-26 chr2 118641523 118641842 + 0.75 NA Intergenic Intergenic -38716 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 113-55 chr20 52939638 52939993 + 0.75 NA Intergenic MIRb|SINE|MIR -32543 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 143.75-52 chr2 211459612 211459813 + 0.75 NA intron (NM_001042599, intron 20 of 26) THE1B|LTR|ERVL-MaLR 842141 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 127.5-67 chr2 185118253 185118540 + 0.75 NA Intergenic L1MA8|LINE|L1 48676 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 131.5-79 chr6 68915011 68915418 + 0.75 NA intron (NM_001704, intron 3 of 31) MIR|SINE|MIR 279932 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 115.75-100 chr9 1252908 1253115 + 0.75 NA Intergenic Intergenic 201524 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 117.5-31 chr16 12249180 12249358 + 0.75 NA intron (NM_032167, intron 14 of 20) MLT1H2|LTR|ERVL-MaLR 272535 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 128.5-98 chr8 135218037 135218228 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -15999 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 137-27 chr15 26307055 26307314 + 0.75 NA Intergenic THE1C-int|LTR|ERVL-MaLR 191371 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 117.25-7 chr1 188127074 188127305 + 0.75 NA Intergenic Intergenic 683561 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 135-57 chr5 16156849 16157062 + 0.75 NA intron (NM_001102562, intron 2 of 3) Tigger3a|DNA|TcMar-Tigger 22836 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 181.25-50 chr5 130216970 130217328 + 0.75 NA Intergenic Intergenic 312684 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 152.25-51 chr5 114066025 114066329 + 0.75 NA Intergenic Intergenic -295893 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 145.25 chr1 9098594 9098862 + 0.75 NA Intergenic Intergenic -26469 NM_001328619 6518 Hs.530003 NM_003039 ENSG00000142583 SLC2A5 GLUT-5|GLUT5 solute carrier family 2 member 5 protein-coding 184-55 chrX 49229036 49229462 + 0.75 NA intron (NM_001256790, intron 6 of 47) AluSz|SINE|Alu 4091 NM_001256789 778 Hs.632799 NM_005183 ENSG00000102001 CACNA1F AIED|COD3|COD4|CORDX|CORDX3|CSNB2|CSNB2A|CSNBX2|Cav1.4|Cav1.4alpha1|JM8|JMC8|OA2 calcium voltage-gated channel subunit alpha1 F protein-coding 116.25-78 chr6 35791268 35791595 + 0.75 NA intron (NM_001348773, intron 2 of 2) AluSg|SINE|Alu 5892 NM_001832 1208 Hs.1340 NM_001832 ENSG00000137392 CLPS - colipase protein-coding 158-46 chr4 65122484 65122823 + 0.75 NA Intergenic Intergenic -118153 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 140.25-6 chr10 47111139 47111460 + 0.75 NA Intergenic Intergenic -188898 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 120-23 chr12 9143427 9143655 + 0.75 NA Intergenic LTR19-int|LTR|ERV1 -27312 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 113.75-72 chr3 61778630 61778861 + 0.75 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 217174 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 136-47 chr3 40997067 40997309 + 0.75 NA Intergenic Intergenic -202317 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 164-45 chr5 51148210 51148480 + 0.75 NA Intergenic L1PA16|LINE|L1 -178158 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 145.75-39 chr2 159141926 159142222 + 0.75 NA intron (NM_001350062, intron 5 of 23) intron (NM_001350062, intron 5 of 23) -44761 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 136.5-56 chr2 106026153 106026496 + 0.75 NA Intergenic Intergenic -39364 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 182.25-57 chr8 118414468 118414725 + 0.75 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -206405 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 138.75-30 chr17 63454448 63454679 + 0.75 NA Intergenic AluSx|SINE|Alu -8257 NM_001915 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 124-63 chr6 55082521 55082843 + 0.75 NA Intergenic Intergenic -23778 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 133-24 chr15 72748075 72748307 + 0.75 NA Intergenic L1MC3|LINE|L1 -34644 NR_040107 100287559 Hs.562587 NR_040107 ENSG00000260898 ADPGK-AS1 - ADPGK antisense RNA 1 ncRNA 138.75-7 chr1 194840215 194840471 + 0.75 NA Intergenic Intergenic 1248372 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 161.25-34 chr2 11090342 11090581 + 0.75 NA Intergenic L1MB7|LINE|L1 41715 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 180-43 chr20 39457774 39458074 + 0.75 NA Intergenic L2c|LINE|L2 -233176 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 115.5-44 chr2 64523627 64523895 + 0.75 NA promoter-TSS (NM_203437) promoter-TSS (NM_203437) 394 NR_136167 101927402 Hs.187018 NR_136167 ENSG00000260101 LOC101927402 - uncharacterized LOC101927402 ncRNA 179.5-35 chr14 72878106 72878537 + 0.75 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 14328 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 115-49 chr22 22917121 22917460 + 0.75 NA Intergenic Intergenic 29474 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 186.75-36 chr3 175479776 175480184 + 0.75 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 110440 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 155.75-77 chrX 122072072 122072358 + 0.75 NA Intergenic L1MA3|LINE|L1 701243 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 201.75-23 chr3 4665733 4666149 + 0.75 NA intron (NM_001168272, intron 16 of 60) MER20|DNA|hAT-Charlie 85649 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 141-35 chr19 33672542 33672843 + 0.75 NA intron (NM_001127895, intron 2 of 4) intron (NM_001127895, intron 2 of 4) -11836 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 146.5-25 chr14 36569011 36569335 + 0.75 NA Intergenic MLT1I|LTR|ERVL-MaLR 13441 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 181.75-16 chr2 161777995 161778435 + 0.75 NA intron (NM_001354453, intron 2 of 24) intron (NM_001354453, intron 2 of 24) 153799 NM_001354446 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 121.5-31 chr14 37042032 37042287 + 0.75 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -89768 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 150.75-12 chr14 23335857 23336158 + 0.75 NA Intergenic MER4B|LTR|ERV1 14001 NM_001360552 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 119.75-74 chr6 61628947 61629177 + 0.75 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 54932 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 150.25-76 chr8 122234515 122234784 + 0.75 NA Intergenic Intergenic 333995 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 115.5-43 chr2 48440310 48440585 + 0.75 NA promoter-TSS (NM_152994) promoter-TSS (NM_152994) -319 NR_024188 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 204.75-18 chr16 63740754 63741200 + 0.75 NA Intergenic L1MC3|LINE|L1 1381086 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 148.75-45 chr3 108006594 108006860 + 0.75 NA Intergenic Intergenic 84361 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 187-46 chr4 156891593 156892052 + 0.75 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 79977 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 130.25-31 chr15 69529725 69529929 + 0.75 NA Intergenic Intergenic -31893 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 136-55 chr5 1173771 1173990 + 0.75 NA intron (NR_109911, intron 4 of 4) intron (NR_109911, intron 4 of 4) 4725 NR_109911 101928857 Hs.593732 NR_109911 ENSG00000249201 CTD-3080P12.3 - uncharacterized LOC101928857 ncRNA 159.75-7 chr10 87839505 87839817 + 0.75 NA intron (NR_028492, intron 3 of 3) intron (NR_028492, intron 3 of 3) 21348 NR_028492 142913 Hs.369431 NR_028492 ENSG00000223820 CFL1P1 CFLP1 cofilin 1 pseudogene 1 pseudo 145.75-13 chr14 71918810 71919032 + 0.75 NA Intergenic Intergenic -13250 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 165.5-80 chr7 11336787 11337144 + 0.75 NA Intergenic MIR3|SINE|MIR 363093 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 126.25-98 chr9 82100779 82101137 + 0.75 NA Intergenic L1PA16|LINE|L1 112186 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 152.5-71 chr3 108767474 108767891 + 0.75 NA Intergenic MER66A|LTR|ERV1 -10399 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 177-50 chr6 163666336 163666652 + 0.75 NA intron (NR_134620, intron 1 of 1) MIRb|SINE|MIR 4990 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 119-68 chr7 26719597 26719862 + 0.75 NA intron (NM_003930, intron 9 of 12) intron (NM_003930, intron 9 of 12) 81858 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 199-28 chr22 25162343 25162764 + 0.75 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -37305 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 210-34 chr6 120277565 120277995 + 0.75 NA Intergenic Intergenic 262601 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 142.75-26 chr14 63262455 63262735 + 0.75 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 56340 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 138.75-63 chr5 115131554 115131800 + 0.75 NA intron (NM_001300752, intron 7 of 8) L1MB4|LINE|L1 38231 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 188.25-25 chr2 62869498 62869816 + 0.75 NA intron (NM_001142615, intron 9 of 22) L1ME1|LINE|L1 162760 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 241.5-10 chr14 26247085 26247681 + 0.75 NA Intergenic (TTTCT)n|Simple_repeat|Simple_repeat 306047 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 161-45 chr22 21762164 21762595 + 0.75 NA 3' UTR (NM_002745, exon 9 of 9) 3' UTR (NM_002745, exon 9 of 9) -26585 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 116.25-64 chr4 64463724 64463888 + 0.75 NA Intergenic Intergenic -54346 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 136.75-47 chr2 84449890 84450132 + 0.75 NA intron (NM_003849, intron 1 of 8) intron (NM_003849, intron 1 of 8) 9269 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 125-45 chr18 4984415 4984668 + 0.75 NA Intergenic Intergenic -96641 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 144-15 chr11 96147181 96147577 + 0.75 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -194059 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 294.5-19 chr8 29604233 29604820 + 0.75 NA Intergenic L1ME3G|LINE|L1 143583 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 128-8 chr11 20188550 20188873 + 0.75 NA Intergenic Intergenic -28236 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 143-13 chr12 4660212 4660533 + 0.75 NA intron (NM_005002, intron 5 of 10) L2a|LINE|L2 11258 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 173.5-74 chr4 33902218 33902545 + 0.75 NA intron (NR_125902, intron 4 of 4) intron (NR_125902, intron 4 of 4) 137512 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 127.5-63 chr2 105064551 105064858 + 0.75 NA intron (NM_182640, intron 2 of 10) L2b|LINE|L2 -26208 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 122.5-39 chr18 2153633 2153957 + 0.75 NA Intergenic LTR79|LTR|ERVL 417710 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 146-38 chr22 35515088 35515486 + 0.75 NA Intergenic LTR103_Mam|LTR|ERV1? -25207 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 183.75-41 chr3 115725246 115725622 + 0.75 NA Intergenic Intergenic 101924 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 157.75-35 chr18 6327179 6327472 + 0.75 NA intron (NM_001365765, intron 1 of 18) L1ME3Cz|LINE|L1 31705 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 141.75-61 chr4 83735785 83736169 + 0.75 NA Intergenic Intergenic 199869 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 185-37 chr5 162054193 162054528 + 0.75 NA Intergenic AluJr|SINE|Alu -13282 NM_000816 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 152.75-44 chr3 39231029 39231327 + 0.75 NA Intergenic L1MDa|LINE|L1 -38583 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 237.75-16 chr14 64850205 64850662 + 0.75 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -27053 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 162.5-18 chr11 85366015 85366364 + 0.75 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 261081 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 115.5-39 chr18 5332064 5332243 + 0.75 NA Intergenic Intergenic -35100 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 144.25-46 chr21 18953065 18953588 + 0.75 NA Intergenic Intergenic -193514 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 198.75-17 chr19 14771101 14771460 + 0.75 NA intron (NM_013447, intron 5 of 20) intron (NM_013447, intron 5 of 20) 5647 NM_001271052 30817 Hs.531619 NM_013447 ENSG00000127507 ADGRE2 CD312|CD97|EMR2|VBU adhesion G protein-coupled receptor E2 protein-coding 150.5-7 chr10 65039177 65039501 + 0.75 NA Intergenic Intergenic -114821 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 177.5-38 chr2 151815258 151815714 + 0.75 NA intron (NM_177985, intron 1 of 5) intron (NM_177985, intron 1 of 5) 12935 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 194-15 chr13 36263044 36263429 + 0.75 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 34578 NM_001144981 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 140.75-66 chr8 98774157 98774344 + 0.75 NA intron (NM_006281, intron 2 of 10) L1MEj|LINE|L1 51421 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 156.75-64 chr3 148148755 148149069 + 0.75 NA Intergenic Intergenic 70753 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 128.5-100 chr9 38207381 38207676 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR -138301 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 157.25-33 chr19 15226578 15226925 + 0.75 NA TTS (NM_024794) TTS (NM_024794) 5697 NM_024794 79852 Hs.156457 NM_024794 ENSG00000105131 EPHX3 ABHD9|EH3 epoxide hydrolase 3 protein-coding 136.75-46 chr2 35773186 35773425 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 301900 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 171.25-33 chr3 35495965 35496347 + 0.75 NA Intergenic L1MC1|LINE|L1 -102133 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 145-36 chr2 105042195 105042524 + 0.75 NA intron (NM_182640, intron 1 of 10) MLT1F2|LTR|ERVL-MaLR -3863 NR_110603 102724691 Hs.606390 NR_110603 ENSG00000224509 LOC102724691 - uncharacterized LOC102724691 ncRNA 145.25-60 chr4 176256481 176256907 + 0.75 NA intron (NM_080874, intron 1 of 6) AluJb|SINE|Alu 12528 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 134-60 chr5 57827053 57827308 + 0.75 NA Intergenic Intergenic 71982 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 127.25-39 chr17 31328925 31329308 + 0.75 NA intron (NM_001042492, intron 38 of 57) AluJo|SINE|Alu -7494 NM_001003927 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 167.75-50 chr4 70462492 70462794 + 0.75 NA intron (NM_001145006, intron 1 of 3) intron (NM_001145006, intron 1 of 3) -9315 NM_001145007 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 165-51 chr8 103439153 103439489 + 0.75 NA intron (NM_015420, intron 8 of 10) intron (NM_015420, intron 8 of 10) 23935 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 123.75-9 chr1 245058191 245058381 + 0.75 NA intron (NM_032328, intron 3 of 7) A-rich|Low_complexity|Low_complexity -87417 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 143.5-22 chr12 42076294 42076617 + 0.75 NA Intergenic L2a|LINE|L2 68419 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 182.5-44 chr3 123397052 123397618 + 0.75 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 19007 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 128.75-40 chr2 51114078 51114324 + 0.75 NA intron (NR_135237, intron 2 of 10) MIRb|SINE|MIR 81600 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 133.5-43 chr18 22608430 22608752 + 0.75 NA Intergenic MIRb|SINE|MIR 178246 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 131.25-90 chr9 27376912 27377183 + 0.75 NA intron (NM_024761, intron 2 of 3) MIR|SINE|MIR -79897 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 168.25-44 chr4 35175728 35176101 + 0.75 NA Intergenic Intergenic -906167 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 137-12 chr11 31897211 31897464 + 0.75 NA Intergenic Intergenic 70770 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 203.5-16 chr14 56908964 56909427 + 0.75 NA intron (NR_029385, intron 3 of 3) AluJb|SINE|Alu 96037 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 112.75-68 chr5 102639794 102640032 + 0.75 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 31551 NR_103756 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 135-72 chr7 79447560 79447763 + 0.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -5296 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 134-39 chr2 143213819 143214058 + 0.75 NA intron (NM_018460, intron 3 of 13) intron (NM_018460, intron 3 of 13) 84519 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 146.75-47 chr5 111871594 111871849 + 0.75 NA intron (NM_001142474, intron 2 of 3) Tigger3b|DNA|TcMar-Tigger -40787 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 142.75-67 chr5 59971556 59971816 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -77960 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 139-15 chr12 121556902 121557155 + 0.75 NA intron (NM_001005366, intron 4 of 22) intron (NM_001005366, intron 4 of 22) 23218 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 151.5-15 chr11 38552019 38552400 + 0.75 NA Intergenic Intergenic 94147 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 172.25-45 chr3 60467941 60468325 + 0.75 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 149737 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 184.5-13 chr11 57554486 57554824 + 0.75 NA intron (NM_198183, intron 2 of 3) intron (NM_198183, intron 2 of 3) 12014 NM_001105565 219537 Hs.68756 NM_001105565 ENSG00000214872 SMTNL1 CHASM smoothelin like 1 protein-coding 167.75-10 chr11 35802606 35802829 + 0.75 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 139942 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 126.25-94 chr8 135268537 135268732 + 0.75 NA intron (NR_120396, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 34503 NR_120395 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 148-33 chr19 35314603 35314833 + 0.75 NA TTS (NM_080600) TTS (NM_080600) -14451 NM_001185101 933 Hs.579691 NM_001771 ENSG00000012124 CD22 SIGLEC-2|SIGLEC2 CD22 molecule protein-coding 115.25-83 chr6 55632783 55633048 + 0.75 NA Intergenic Intergenic -53701 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 116.5-50 chr18 1799893 1800097 + 0.75 NA Intergenic Intergenic -440366 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 113.25-15 chr10 83734946 83735198 + 0.75 NA Intergenic L1MA8|LINE|L1 -57983 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 135.75-64 chr3 77383963 77384320 + 0.75 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 286129 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 116.75-83 chr8 123341165 123341396 + 0.75 NA intron (NM_014109, intron 19 of 27) intron (NM_014109, intron 19 of 27) -6754 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 222.25-2 chr1 85193116 85193648 + 0.75 NA intron (NM_032184, intron 1 of 6) intron (NM_032184, intron 1 of 6) 7634 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 153-48 chr7 95284798 95285087 + 0.75 NA intron (NM_001166160, intron 17 of 19) intron (NM_001166160, intron 17 of 19) 39590 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 123.75-60 chr20 34643576 34643764 + 0.75 NA intron (NM_080476, intron 4 of 11) intron (NM_080476, intron 4 of 11) 33615 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 127.75-72 chr5 7094308 7094548 + 0.75 NA Intergenic L1ME2z|LINE|L1 174926 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 130.5-107 chr9 27487754 27488079 + 0.75 NA intron (NM_024761, intron 1 of 3) MLT1M|LTR|ERVL-MaLR -36398 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 161.5-69 chr5 44165936 44166239 + 0.75 NA Intergenic L1PA15|LINE|L1 -222645 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 122.75-7 chr1 156238735 156238957 + 0.75 NA intron (NM_001199662, intron 4 of 6) intron (NM_001199662, intron 4 of 6) -3338 NM_199173 632 Hs.654541 NM_199173 ENSG00000242252 BGLAP BGP|OC|OCN bone gamma-carboxyglutamate protein protein-coding 136.5-33 chr14 60301324 60301722 + 0.75 NA Intergenic Intergenic -21673 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 129.5-51 chr2 229630589 229630832 + 0.75 NA intron (NM_139072, intron 1 of 12) L1PA16|LINE|L1 83845 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 132.75-8 chr1 172894443 172894731 + 0.75 NA Intergenic Intergenic 156376 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 116.5-37 chr14 66039425 66039586 + 0.75 NA Intergenic Intergenic -446866 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 134-58 chr4 97287773 97288082 + 0.75 NA Intergenic L1M5|LINE|L1 -78999 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 144.5-16 chr10 130150371 130150632 + 0.75 NA intron (NM_006541, intron 2 of 10) intron (NM_006541, intron 2 of 10) 14092 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 145-3 chr1 236468526 236468770 + 0.75 NA intron (NM_080738, intron 5 of 5) intron (NM_080738, intron 5 of 5) -49566 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 132.25-24 chr12 50954238 50954495 + 0.75 NA intron (NM_001109619, intron 3 of 4) Tigger15a|DNA|TcMar-Tigger 1822 NM_001109619 613227 Hs.702849 NM_001109619 ENSG00000214511 HIGD1C GM921 HIG1 hypoxia inducible domain family member 1C protein-coding 166-43 chr4 16486823 16487131 + 0.75 NA Intergenic L2c|LINE|L2 260314 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 127.25-17 chr11 39346998 39347216 + 0.75 NA Intergenic Intergenic 698249 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 227.75-23 chr7 43071332 43072019 + 0.75 NA Intergenic MER61A|LTR|ERV1 -40972 NM_015052 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 127-39 chr17 67264791 67265074 + 0.75 NA Intergenic Intergenic -19736 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 143.75-38 chr15 56208703 56208932 + 0.75 NA intron (NM_001370561, intron 4 of 11) L1MC1|LINE|L1 -18885 NM_001368074 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 178-49 chr7 89727528 89727913 + 0.75 NA Intergenic Intergenic -391680 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 116-43 chr20 54092925 54093204 + 0.75 NA Intergenic L1M4|LINE|L1 -22299 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 205-27 chr21 36288729 36289199 + 0.75 NA intron (NM_005128, intron 34 of 36) intron (NM_005128, intron 34 of 36) -31225 NM_001320446 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 157.75-54 chr4 6808020 6808277 + 0.75 NA intron (NM_014743, intron 2 of 9) intron (NM_014743, intron 2 of 9) 25416 NM_001100590 9778 Hs.79276 NM_014743 ENSG00000170871 KIAA0232 - KIAA0232 protein-coding 181.5-40 chr2 169819457 169819920 + 0.75 NA intron (NM_001293187, intron 4 of 7) intron (NM_001293187, intron 4 of 7) 3409 NR_145754 109617017 NR_145754 SNORD3K - small nucleolar RNA, C/D box 3K snoRNA 153-46 chr6 66492027 66492374 + 0.75 NA Intergenic L1PA7|LINE|L1 704321 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 115-58 chr3 114738977 114739203 + 0.75 NA intron (NM_001348801, intron 4 of 11) intron (NM_001348801, intron 4 of 11) 4435 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 121-18 chr12 84177612 84177855 + 0.75 NA Intergenic Intergenic 735066 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 168.75-44 chr5 15933474 15933907 + 0.75 NA intron (NM_001278317, intron 3 of 3) intron (NM_001278317, intron 3 of 3) -1492 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 156.5-90 chr8 126758560 126758827 + 0.75 NA Intergenic Intergenic -200215 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 132-52 chr4 6738040 6738321 + 0.75 NA Intergenic L1MB3|LINE|L1 22006 NM_018366 55330 Hs.7570 NM_018366 ENSG00000186222 BLOC1S4 BCAS4L|BLOS4|CNO biogenesis of lysosomal organelles complex 1 subunit 4 protein-coding 162.75-29 chr17 16223252 16223697 + 0.75 NA intron (NM_004278, intron 1 of 6) AluSg|SINE|Alu 6264 NM_004278 9487 Hs.499793 NM_004278 ENSG00000108474 PIGL CHIME phosphatidylinositol glycan anchor biosynthesis class L protein-coding 139-69 chr8 120727573 120727906 + 0.75 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -33514 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 184.25-18 chr2 23288506 23288801 + 0.75 NA Intergenic Intergenic -96526 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 219-12 chr17 44055243 44055678 + 0.75 NA intron (NM_001369486, intron 1 of 3) AluJb|SINE|Alu 11211 NM_001369484 124801 Hs.355570 NM_152344 ENSG00000161654 LSM12 PNAS-135 LSM12 homolog protein-coding 114.25-109 chr8 105102254 105102425 + 0.75 NA Intergenic Intergenic -216099 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 138-57 chr5 40026586 40027003 + 0.75 NA Intergenic Intergenic -25497 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 178.75-6 chr12 25517886 25518347 + 0.75 NA intron (NM_152590, intron 7 of 8) intron (NM_152590, intron 7 of 8) 35167 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 131-23 chr16 85188621 85188959 + 0.75 NA Intergenic AluJr|SINE|Alu -19006 NR_162142 113219463 NR_162142 MIR12128 - microRNA 12128 ncRNA 113-72 chr4 169589322 169589592 + 0.75 NA exon (NM_001199398, exon 7 of 35) exon (NM_001199398, exon 7 of 35) 23126 NM_001199399 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 181.75-18 chr2 192006644 192007115 + 0.75 NA intron (NM_001305134, intron 5 of 9) MER5B|DNA|hAT-Charlie -159791 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 195.5-13 chr11 75215036 75215360 + 0.75 NA Intergenic MIRc|SINE|MIR -25576 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 166.75-48 chr5 58359908 58360294 + 0.75 NA Intergenic Intergenic 99985 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 217.5-33 chr4 78841966 78842604 + 0.75 NA intron (NM_017593, intron 3 of 13) intron (NM_017593, intron 3 of 13) 65907 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 154-29 chr18 1707727 1708055 + 0.75 NA Intergenic Intergenic -348262 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 187.25-67 chr9 127329838 127330288 + 0.75 NA intron (NR_104591, intron 7 of 26) MER5A|DNA|hAT-Charlie 65289 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 164-31 chr2 125256591 125256996 + 0.75 NA Intergenic Intergenic 861192 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 166.75-8 chr10 51254654 51254954 + 0.75 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -44769 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 166-39 chr3 4729448 4729830 + 0.75 NA intron (NM_001168272, intron 41 of 60) intron (NM_001168272, intron 41 of 60) 21951 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 126-10 chr10 78278663 78278962 + 0.75 NA intron (NR_073447, intron 1 of 2) LTR33A_|LTR|ERVL 11470 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 156.75-28 chr14 29492724 29492992 + 0.75 NA Intergenic Intergenic 434238 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 151-18 chr15 41453129 41453437 + 0.75 NA intron (NM_015138, intron 3 of 17) Charlie4z|DNA|hAT-Charlie 36179 NM_015138 23168 Hs.511096 NM_015138 ENSG00000137815 RTF1 GTL7|KIAA0252 RTF1 homolog, Paf1/RNA polymerase II complex component protein-coding 115.75-77 chr5 44971828 44972162 + 0.75 NA Intergenic L1ME3B|LINE|L1 163048 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 248.75-9 chr19 5670217 5670616 + 0.75 NA Intergenic AluSx1|SINE|Alu 9822 NM_001365761 125988 Hs.356626 NM_205767 ENSG00000174917 MICOS13 C19orf70|MIC13|P117|QIL1 mitochondrial contact site and cristae organizing system subunit 13 protein-coding 161-9 chr10 73119229 73119707 + 0.75 NA 5' UTR (NM_001283016, exon 3 of 10) 5' UTR (NM_001283016, exon 3 of 10) 6739 NR_145776 109617000 NR_145776 ENSG00000221164 SNORA11F - small nucleolar RNA, H/ACA box 11F snoRNA 174.25-23 chr14 46602142 46602570 + 0.75 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat 49425 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 218.75-6 chr10 60280313 60280937 + 0.75 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 109250 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 136.25-15 chr11 134587261 134587494 + 0.75 NA Intergenic Intergenic -148568 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 171.25-52 chr7 49978233 49978537 + 0.75 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 114861 NM_001159878 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 149.25-33 chr2 128005071 128005322 + 0.75 NA intron (NM_001330303, intron 7 of 19) L1M7|LINE|L1 22099 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 148.5-109 chr8 85113761 85114149 + 0.75 NA intron (NM_001349639, intron 3 of 14) intron (NM_001349639, intron 3 of 14) 6717 NM_001349636 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 148.25-71 chr8 77816834 77817186 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 366313 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 164-74 chr9 134856086 134856307 + 0.75 NA intron (NR_103451, intron 1 of 1) intron (NR_103451, intron 1 of 1) -5389 NR_039696 100616212 NR_039696 ENSG00000266514 MIR3689F mir-3689f microRNA 3689f ncRNA 194.5-33 chr2 78982079 78982532 + 0.75 NA Intergenic MIR|SINE|MIR -43397 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 148.75-3 chr10 75370154 75370406 + 0.75 NA intron (NR_120651, intron 1 of 3) L4_A_Mam|LINE|RTE-X -31248 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 140.5-40 chr2 30597426 30597799 + 0.75 NA intron (NM_182551, intron 6 of 6) L1PA10|LINE|L1 150366 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 145.25-6 chr1 167518375 167518645 + 0.75 NA promoter-TSS (NM_198053) promoter-TSS (NM_198053) 19 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 121.5-66 chr2 134268386 134268570 + 0.75 NA intron (NM_001371457, intron 2 of 16) intron (NM_001371457, intron 2 of 16) 14406 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 113.5-66 chr2 205209940 205210288 + 0.75 NA intron (NM_205863, intron 15 of 21) AluJo|SINE|Alu -472386 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 133-28 chr17 46904686 46904991 + 0.75 NA Intergenic Intergenic -18279 NM_004287 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 129.5-12 chr10 35339255 35339471 + 0.75 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 2489 NM_001282853 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 132-32 chr2 70610983 70611301 + 0.75 NA Intergenic Intergenic -57316 NM_001099691 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 271.25-6 chr2 123092975 123093407 + 0.75 NA Intergenic L1MEj|LINE|L1 -19710 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 151.75-18 chr12 39964140 39964452 + 0.75 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 141785 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 179-15 chr12 2007087 2007382 + 0.75 NA Intergenic Intergenic -2699 NR_135060 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 133.25-11 chr10 105196260 105196625 + 0.75 NA intron (NM_014978, intron 14 of 26) AluSp|SINE|Alu -530226 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 119.5-116 chr7 87902618 87902819 + 0.75 NA intron (NM_001318061, intron 10 of 11) intron (NM_001318061, intron 10 of 11) 26225 NM_001318061 10926 Hs.485380 NM_006716 ENSG00000006634 DBF4 ASK|CHIF|DBF4A|ZDBF1 DBF4 zinc finger protein-coding 185-39 chr6 125221355 125221684 + 0.75 NA intron (NM_003287, intron 2 of 6) intron (NM_003287, intron 2 of 6) 17808 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 149-10 chr11 65718299 65718569 + 0.75 NA 3' UTR (NM_032193, exon 4 of 4) 3' UTR (NM_032193, exon 4 of 4) 2504 NM_032193 84153 Hs.718438 NM_032193 ENSG00000172922 RNASEH2C AGS3|AYP1 ribonuclease H2 subunit C protein-coding 119.75-51 chr20 20023737 20023940 + 0.75 NA intron (NM_016100, intron 2 of 5) L1M5|LINE|L1 6043 NM_181527 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 150.5-95 chr8 140732355 140732704 + 0.75 NA TTS (NR_029892) TTS (NR_029892) 124 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 133-57 chr7 21369946 21370163 + 0.75 NA Intergenic Intergenic -58029 NM_003112 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 148-31 chr17 59918970 59919273 + 0.75 NA intron (NR_161455, intron 4 of 13) HAL1|LINE|L1 26000 NM_001369678 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 180.5-26 chr14 70270237 70270589 + 0.75 NA Intergenic Ricksha|DNA|MULE-MuDR -22612 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 125.5-55 chr16 56304754 56305027 + 0.75 NA intron (NM_138736, intron 3 of 7) intron (NM_138736, intron 3 of 7) 59370 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 140.25-60 chr4 9991533 9991931 + 0.75 NA intron (NM_001001290, intron 4 of 12) MLT1B|LTR|ERVL-MaLR 29765 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 151.75-43 chr2 70123376 70123654 + 0.75 NA TTS (NR_024444) TTS (NR_024444) 1801 NR_024444 100133985 Hs.135528 NR_024444 ENSG00000231327 LINC01816 - long intergenic non-protein coding RNA 1816 ncRNA 181-10 chr10 92080914 92081259 + 0.75 NA intron (NM_001178137, intron 9 of 9) intron (NM_001178137, intron 9 of 9) 157316 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 153.25-34 chr22 45214882 45215265 + 0.75 NA intron (NM_001009880, intron 1 of 9) AluSz|SINE|Alu -2607 NM_015264 23313 Hs.592207 NM_015264 ENSG00000100364 KIAA0930 C22orf9|LSC3 KIAA0930 protein-coding 123.75-103 chr8 25502871 25503154 + 0.75 NA intron (NM_001317906, intron 12 of 13) AluJb|SINE|Alu 43779 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 150.5-52 chr2 206573653 206573913 + 0.75 NA intron (NM_003812, intron 18 of 25) Tigger4|DNA|TcMar-Tigger -70444 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 198.5-29 chr20 60685653 60685989 + 0.75 NA Intergenic Intergenic 121259 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 112.75-39 chr17 29334317 29334582 + 0.75 NA Intergenic L1MB4|LINE|L1 -40301 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 122-68 chr7 8393224 8393422 + 0.75 NA Intergenic L2a|LINE|L2 -40286 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 162.25-9 chr14 26363274 26363594 + 0.75 NA Intergenic Intergenic 189996 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 129.25-35 chr17 58530108 58530418 + 0.75 NA promoter-TSS (NR_104196) promoter-TSS (NR_104196) -796 NM_001363803 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 151.25-30 chr18 21772044 21772245 + 0.75 NA intron (NM_020774, intron 3 of 20) intron (NM_020774, intron 3 of 20) 30815 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 206.5-2 chr1 179763268 179763840 + 0.75 NA intron (NM_001329719, intron 1 of 4) intron (NM_001329719, intron 1 of 4) 20263 NM_001329717 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 206.5-32 chr20 51404669 51404996 + 0.75 NA intron (NM_012340, intron 9 of 10) intron (NM_012340, intron 9 of 10) 48145 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 191-34 chr3 139131457 139131786 + 0.75 NA Intergenic Intergenic 27436 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 193.5-80 chr9 29876532 29876890 + 0.75 NA Intergenic Intergenic 531743 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 125.25-45 chr2 182436803 182436993 + 0.75 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -9850 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 144-60 chr5 12879550 12879828 + 0.75 NA intron (NR_147005, intron 4 of 4) L1M3|LINE|L1 153197 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 161.75-39 chr4 55406503 55406795 + 0.75 NA intron (NR_073070, intron 2 of 6) L1ME4b|LINE|L1 10692 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 189-52 chr8 127220729 127221040 + 0.75 NA Intergenic Intergenic -1616 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 201.75-32 chr5 176473947 176474460 + 0.75 NA intron (NM_014613, intron 1 of 10) L1MC3|LINE|L1 25818 NM_014613 23197 Hs.484242 NM_014613 ENSG00000113194 FAF2 ETEA|UBXD8|UBXN3B Fas associated factor family member 2 protein-coding 135.25-63 chr3 132910476 132910893 + 0.75 NA Intergenic Intergenic -127604 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 130.5-55 chr20 17163100 17163312 + 0.75 NA Intergenic Intergenic -62901 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 133.5-56 chr20 56894257 56894607 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR 265126 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 172.5-35 chr2 166830550 166830874 + 0.75 NA Intergenic L1ME1|LINE|L1 -57775 NM_152381 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 116.25-3 chr1 56907420 56907669 + 0.75 NA intron (NM_000562, intron 8 of 10) intron (NM_000562, intron 8 of 10) 52774 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 149.75-2 chr1 170304327 170304566 + 0.75 NA Intergenic Intergenic -20238 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 212-27 chr2 213886429 213886887 + 0.75 NA intron (NR_047660, intron 10 of 14) HAL1b|LINE|L1 128591 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 146.5-63 chr3 170371759 170372173 + 0.75 NA intron (NM_001145097, intron 1 of 5) intron (NM_001145097, intron 1 of 5) 12343 NM_001145097 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 152.25-27 chr17 8469929 8470200 + 0.75 NA Intergenic Intergenic 34180 NM_001330129 81565 Hs.372123 NM_030808 ENSG00000166579 NDEL1 EOPA|MITAP1|NDE1L1|NDE2|NUDEL nudE neurodevelopment protein 1 like 1 protein-coding 209.25-10 chr15 58978704 58979143 + 0.75 NA Intergenic AluSx|SINE|Alu -8740 NM_017610 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 156.75-35 chr15 79408984 79409292 + 0.75 NA intron (NM_001330376, intron 2 of 2) intron (NM_001330376, intron 2 of 2) -23378 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 155.5-23 chr11 114978316 114978579 + 0.75 NA Intergenic Intergenic 299920 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 191-5 chr1 221037960 221038351 + 0.75 NA Intergenic L1PA13|LINE|L1 -158015 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 244.75-3 chr1 222241380 222241986 + 0.75 NA Intergenic LTR22B|LTR|ERVK -263163 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 136.75-26 chr13 82584726 82585034 + 0.75 NA Intergenic Intergenic 1297513 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 198.75-48 chr8 119923011 119923313 + 0.75 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 49440 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 145.25-33 chr17 35179227 35179442 + 0.75 NA intron (NM_001033576, intron 17 of 19) L1PA6|LINE|L1 15059 NM_152462 146861 Hs.514814 NM_152462 ENSG00000164729 SLC35G3 AMAC1|TMEM21A solute carrier family 35 member G3 protein-coding 147.75-56 chr4 64369617 64369943 + 0.75 NA intron (NM_001363796, intron 2 of 11) MIR|SINE|MIR 39670 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 189.25-9 chr12 24503232 24503756 + 0.75 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 58997 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 147.75-59 chr4 155190498 155190811 + 0.75 NA Intergenic Intergenic -17982 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 176.5-53 chr20 6215475 6215883 + 0.75 NA Intergenic Intergenic -92135 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 139.75-9 chr1 220871943 220872251 + 0.75 NA intron (NR_046901, intron 1 of 2) intron (NR_046901, intron 1 of 2) -7346 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 156-5 chr1 114632245 114632554 + 0.75 NA intron (NM_198459, intron 1 of 17) L1MEc|LINE|L1 37650 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 118-16 chr11 92111701 92112031 + 0.75 NA Intergenic L1PBa|LINE|L1 -113168 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 144.25-54 chr4 36009414 36009748 + 0.75 NA intron (NR_146893, intron 36 of 36) L1PA16|LINE|L1 234358 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 147.25-27 chr2 60482548 60482768 + 0.75 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 70840 NM_001363864 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 119.75-73 chr6 56833444 56833642 + 0.75 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 10122 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 117.25-68 chr4 77351970 77352204 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -159666 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 177.25-4 chr1 241578414 241578694 + 0.75 NA intron (NM_003679, intron 10 of 14) L1PB3|LINE|L1 46176 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 130.5-101 chr8 126301314 126301559 + 0.75 NA Intergenic MIR|SINE|MIR -24059 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 133.75-57 chr3 114731378 114731603 + 0.75 NA intron (NM_001348801, intron 4 of 11) CR1-3_Croc|LINE|CR1 12035 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 179.5-67 chr3 180780569 180780845 + 0.75 NA intron (NR_109986, intron 4 of 13) L1PA15|LINE|L1 89471 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 170-27 chr20 36536759 36537232 + 0.75 NA intron (NR_109939, intron 2 of 4) L1MB7|LINE|L1 -4524 NM_006097 10398 Hs.504687 NM_006097 ENSG00000101335 MYL9 LC20|MLC-2C|MLC2|MRLC1|MYRL2 myosin light chain 9 protein-coding 130-2 chr1 61531499 61531822 + 0.75 NA Intergenic MIR|SINE|MIR -122582 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 117.25-83 chr6 124586895 124587088 + 0.75 NA intron (NM_001300738, intron 4 of 7) L1ME1|LINE|L1 303986 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 121.75-50 chr20 48090513 48090724 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -100501 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 127-63 chr3 117776158 117776439 + 0.75 NA Intergenic Intergenic -85373 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 121-9 chr1 189010838 189011115 + 0.75 NA Intergenic L1MEg|LINE|L1 1465034 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 165.5-73 chr6 55944048 55944336 + 0.75 NA Intergenic Intergenic -68602 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 247.25-15 chr2 175008658 175009246 + 0.75 NA Intergenic Intergenic -3573 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 151.75-32 chr15 68404149 68404427 + 0.75 NA intron (NM_001004439, intron 1 of 29) intron (NM_001004439, intron 1 of 29) 27875 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 135.5-16 chr11 58594342 58594533 + 0.75 NA intron (NM_001197051, intron 2 of 10) intron (NM_001197051, intron 2 of 10) 15323 NR_024091 386607 Hs.524920 NM_170768 ZFP91-CNTF ZFP91|ZNF757|Zfp-91 ZFP91-CNTF readthrough (NMD candidate) ncRNA 152-39 chr22 31351840 31352144 + 0.75 NA TTS (NR_120386) TTS (NR_120386) 5233 NR_120386 54944 Hs.648259 NM_017834 LINC01521 - long intergenic non-protein coding RNA 1521 ncRNA 147.5-20 chr12 49036545 49036932 + 0.75 NA intron (NM_003482, intron 34 of 53) AluSq2|SINE|Alu -17962 NM_001206709 5571 Hs.530862 NM_002733 ENSG00000181929 PRKAG1 AMPKG protein kinase AMP-activated non-catalytic subunit gamma 1 protein-coding 141.5-82 chr4 35415588 35415951 + 0.75 NA Intergenic Intergenic 828170 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 117-54 chr3 48319001 48319245 + 0.75 NA intron (NM_001080525, intron 3 of 4) intron (NM_001080525, intron 3 of 4) -2664 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 126.75-53 chr21 30229464 30229754 + 0.75 NA Intergenic Intergenic -13512 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 185.75-35 chr20 17760646 17760916 + 0.75 NA Intergenic Intergenic 60833 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 307-8 chr20 44180282 44181021 + 0.75 NA intron (NM_175913, intron 1 of 1) intron (NM_175913, intron 1 of 1) 6537 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 144-13 chr11 42575009 42575262 + 0.75 NA Intergenic Intergenic -321445 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 153.75-46 chr20 52376234 52376523 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -184393 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 178.25-5 chr1 98732690 98733015 + 0.75 NA intron (NR_033716, intron 8 of 8) intron (NR_033716, intron 8 of 8) 71131 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 156.5-5 chr1 194822864 194823153 + 0.75 NA Intergenic L1MA3|LINE|L1 1265707 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 171.25-36 chr3 143348501 143348875 + 0.75 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) 6442 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 261.75-2 chr1 97842285 97842714 + 0.75 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 45578 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 131.25-41 chr2 20582044 20582276 + 0.75 NA Intergenic Intergenic 10388 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 146.25-68 chr7 116303860 116304232 + 0.75 NA Intergenic Intergenic -17319 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 132.75-28 chr11 116293403 116293661 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -345890 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 155.75-17 chr15 63235828 63236116 + 0.75 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) -41578 NM_001145646 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 138-6 chr1 219102328 219102625 + 0.75 NA intron (NR_038845, intron 3 of 4) L1M3c|LINE|L1 71312 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 139.75-22 chr12 77404134 77404416 + 0.75 NA Intergenic Intergenic -338706 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 163-39 chr3 168830634 168830954 + 0.75 NA TTS (NR_021485) TTS (NR_021485) -71151 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 114-12 chr10 63071310 63071499 + 0.75 NA Intergenic Intergenic -61843 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 144.5-112 chrX 11283103 11283358 + 0.75 NA intron (NM_006125, intron 1 of 10) L2b|LINE|L2 -10183 NM_182681 265 Hs.654436 NM_001142 ENSG00000125363 AMELX AI1E|AIH1|ALGN|AMG|AMGL|AMGX amelogenin X-linked protein-coding 183-68 chr8 41943307 41943635 + 0.75 NA intron (NM_001305878, intron 13 of 13) intron (NM_001305878, intron 13 of 13) -46730 NM_001142446 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 145.25-65 chr5 123651443 123651816 + 0.75 NA Intergenic Intergenic 106212 NM_001270572 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 185.5-66 chr6 125651813 125652177 + 0.75 NA Intergenic Intergenic -22358 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 118-40 chr2 133037369 133037656 + 0.75 NA intron (NM_207481, intron 6 of 17) L1MA1|LINE|L1 121955 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 164-22 chr16 23877111 23877372 + 0.75 NA intron (NM_002738, intron 2 of 16) AluJo|SINE|Alu 41258 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 169.5-20 chr12 54282343 54282728 + 0.75 NA intron (NR_135167, intron 5 of 10) intron (NR_135167, intron 5 of 10) 1809 NM_002136 3178 Hs.546261 NM_002136 ENSG00000135486 HNRNPA1 ALS19|ALS20|HNRPA1|HNRPA1L3|IBMPFD3|UP 1|hnRNP A1|hnRNP-A1 heterogeneous nuclear ribonucleoprotein A1 protein-coding 161.75-68 chr9 107774679 107774968 + 0.75 NA Intergenic Intergenic -285054 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 133.25-8 chr10 34468697 34469008 + 0.75 NA intron (NM_001184789, intron 4 of 22) intron (NM_001184789, intron 4 of 22) 346444 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 127-99 chr8 142956133 142956442 + 0.75 NA Intergenic Intergenic -38444 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 173.5-13 chr12 20734629 20734953 + 0.75 NA intron (NM_017435, intron 10 of 14) MARNA|DNA|TcMar-Mariner 39326 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 158-28 chr2 19048757 19049124 + 0.75 NA Intergenic Intergenic -21969 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 136.25-20 chr12 39562236 39562616 + 0.75 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 57377 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 141.75-71 chr5 164144921 164145280 + 0.75 NA Intergenic L1MA5|LINE|L1 322302 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 149.75-34 chr21 21797963 21798257 + 0.75 NA TTS (NR_109958) TTS (NR_109958) 51125 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 153-27 chr3 3674824 3675156 + 0.75 NA Intergenic Intergenic -124441 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 122.25-29 chr14 59569931 59570232 + 0.75 NA intron (NM_001164399, intron 3 of 19) LTR41|LTR|ERVL 6731 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 176.5-42 chr19 36847658 36848025 + 0.75 NA intron (NM_001242800, intron 1 of 4) MLT1A1|LTR|ERVL-MaLR 2426 NM_001242801 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 138.75-57 chr5 14834744 14834979 + 0.75 NA intron (NM_054027, intron 1 of 11) MIR|SINE|MIR -8849 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 113-63 chr3 130664877 130665065 + 0.75 NA intron (NM_001102608, intron 34 of 35) intron (NM_001102608, intron 34 of 35) 81858 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 171-25 chr15 55727786 55728096 + 0.75 NA intron (NM_173814, intron 2 of 19) AluSx3|SINE|Alu 15211 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 150-28 chr17 57458935 57459253 + 0.75 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 64503 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 157.75-62 chr5 29514340 29514661 + 0.75 NA Intergenic L1M5|LINE|L1 -118524 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 123.25-37 chr2 11781850 11782056 + 0.75 NA intron (NM_001349203, intron 7 of 20) intron (NM_001349203, intron 7 of 20) 14509 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 127.75-28 chr14 45950801 45951009 + 0.75 NA Intergenic Intergenic -113254 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 136.5-65 chr22 29498148 29498500 + 0.75 NA Intergenic L1M5|LINE|L1 18106 NM_021076 4744 Hs.198760 NM_021076 ENSG00000100285 NEFH CMT2CC|NFH neurofilament heavy protein-coding 129.75-18 chr12 6274972 6275213 + 0.75 NA Intergenic Intergenic -35344 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 230.75-25 chr7 7547955 7548372 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -12290 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 148.5-120 chrX 88393191 88393585 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -353837 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 135.75-74 chr5 71785308 71785592 + 0.75 NA Intergenic Intergenic 66175 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 131.75-19 chr12 6029543 6029871 + 0.75 NA intron (NM_000552, intron 21 of 51) intron (NM_000552, intron 21 of 51) 10476 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 135.25-23 chr12 118183663 118183884 + 0.75 NA intron (NM_001346490, intron 15 of 21) intron (NM_001346490, intron 15 of 21) 6762 NM_001346495 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 134.75-64 chr6 115325403 115325697 + 0.75 NA Intergenic Intergenic 318285 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 126.75-13 chr10 82980262 82980606 + 0.75 NA intron (NR_163253, intron 10 of 10) intron (NR_163253, intron 10 of 10) 696655 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 124.5-26 chr12 85136853 85137233 + 0.75 NA intron (NM_001079910, intron 18 of 26) L1MC5|LINE|L1 100692 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 137-49 chr3 100622159 100622397 + 0.75 NA intron (NM_032787, intron 1 of 15) L1MC|LINE|L1 12677 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 135.5-89 chr5 159016072 159016381 + 0.75 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 81730 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 171-65 chrX 110879649 110880043 + 0.75 NA Intergenic L1PA13|LINE|L1 -64395 NM_001128166 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 259.5-2 chr1 204737985 204738403 + 0.75 NA Intergenic HAL1|LINE|L1 -52456 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 193.5-27 chr2 33570140 33570463 + 0.75 NA promoter-TSS (NR_146505) promoter-TSS (NR_146505) -871 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 186.25-34 chr20 14174767 14175226 + 0.75 NA intron (NM_001351663, intron 3 of 17) L1PBa|LINE|L1 162616 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 113.75-17 chr10 46032451 46032623 + 0.75 NA TTS (NM_002443) TTS (NM_002443) -1823 NM_001145261 8031 Hs.643658 NM_005437 ENSG00000266412 NCOA4 ARA70|ELE1|PTC3|RFG nuclear receptor coactivator 4 protein-coding 122-12 chr11 42414259 42414633 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -160756 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 142.75-21 chr10 129429390 129429611 + 0.75 NA Intergenic HAL1|LINE|L1 -37741 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 181-7 chr10 44338887 44339232 + 0.75 NA Intergenic L2b|LINE|L2 46038 NM_001277990 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 233.5-38 chr3 184415146 184415586 + 0.75 NA intron (NR_161198, intron 1 of 2) intron (NR_161198, intron 1 of 2) 13829 NR_161198 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 202-8 chr14 48705012 48705387 + 0.75 NA Intergenic L3|LINE|CR1 881181 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 113-84 chr5 176909055 176909292 + 0.75 NA intron (NM_016290, intron 11 of 14) intron (NM_016290, intron 11 of 14) -9827 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 113-31 chr16 61615730 61615986 + 0.75 NA Intergenic LTR33|LTR|ERVL 420580 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 163.5-91 chr8 92140902 92141318 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -37725 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 163.75-64 chr6 110351269 110351613 + 0.75 NA intron (NM_001123364, intron 1 of 4) intron (NM_001123364, intron 1 of 4) 6831 NM_001123364 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 146-23 chr19 34643902 34644153 + 0.75 NA intron (NR_027620, intron 1 of 3) HAL1|LINE|L1 -1846 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 225.75-22 chr5 38559037 38559402 + 0.75 NA intron (NR_103554, intron 1 of 8) intron (NR_103554, intron 1 of 8) -1658 NR_037423 100500824 NR_037423 ENSG00000265304 MIR3650 - microRNA 3650 ncRNA 162.25-17 chr16 80743303 80743623 + 0.75 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 61135 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 145.25-48 chr20 46596930 46597217 + 0.75 NA intron (NM_001193339, intron 3 of 11) intron (NM_001193339, intron 3 of 11) -46419 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 198.75-47 chr8 19580024 19580332 + 0.75 NA intron (NM_001354495, intron 2 of 9) L1MEg|LINE|L1 22367 NM_001354492 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 138-81 chr8 122111280 122111559 + 0.75 NA Intergenic L1ME1|LINE|L1 457225 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 150-67 chr6 62350376 62350654 + 0.75 NA Intergenic L1ME1|LINE|L1 -64288 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 163.5-73 chr5 149586654 149587097 + 0.75 NA intron (NM_001001669, intron 1 of 12) CR1-3_Croc|LINE|CR1 5377 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 123.75-83 chr4 168925869 168926127 + 0.75 NA intron (NM_001367567, intron 11 of 11) intron (NM_001367567, intron 11 of 11) 84257 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 114.5-89 chr6 41549602 41549955 + 0.75 NA intron (NM_001012427, intron 1 of 16) intron (NM_001012427, intron 1 of 16) -1157 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 211-21 chr3 9632105 9632624 + 0.75 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat -17141 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 122.5-36 chr17 48046649 48046966 + 0.75 NA Intergenic Intergenic -1552 NM_003204 4779 Hs.514284 NM_003204 ENSG00000082641 NFE2L1 LCR-F1|NRF1|TCF11 nuclear factor, erythroid 2 like 1 protein-coding 155.75-49 chr5 34976487 34976877 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR 47089 NM_001348420 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 166.25-45 chr4 43887917 43888345 + 0.75 NA Intergenic Intergenic -128730 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 125.25-49 chr22 30594784 30595140 + 0.75 NA intron (NM_001282327, intron 2 of 16) AluJb|SINE|Alu -3052 NM_014303 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 NOP7|PES pescadillo ribosomal biogenesis factor 1 protein-coding 200.75-8 chr11 101867398 101867752 + 0.75 NA Intergenic Intergenic -47435 NM_020802 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 114.5-10 chr11 90983428 90983580 + 0.75 NA Intergenic Intergenic -114302 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 192-11 chr12 48875551 48875884 + 0.75 NA Intergenic AluJb|SINE|Alu -9847 NM_014470 27289 Hs.124940 NM_014470 ENSG00000172602 RND1 ARHS|RHO6|RHOS Rho family GTPase 1 protein-coding 159.5-46 chr2 201136270 201136491 + 0.75 NA exon (NM_001308043, exon 5 of 5) exon (NM_001308043, exon 5 of 5) 3599 NM_001202518 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP CASP8 and FADD like apoptosis regulator protein-coding 115.75-18 chr12 128053660 128053957 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie -26642 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 127.75-41 chr17 77706333 77706570 + 0.75 NA Intergenic Intergenic 22108 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 137.5-51 chr2 16620133 16620414 + 0.75 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 45561 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 173.5-93 chr7 4438608 4438982 + 0.75 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -243500 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 162.5-79 chr6 121316154 121316723 + 0.75 NA intron (NR_104452, intron 3 of 35) Charlie13a|DNA|hAT-Charlie 18042 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 126-57 chr22 33619614 33619808 + 0.75 NA intron (NM_133642, intron 4 of 14) MIR|SINE|MIR 85209 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 265.25-4 chr1 208425219 208425853 + 0.75 NA Intergenic LTR16E2|LTR|ERVL -181152 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 157.25-32 chr18 13748380 13748729 + 0.75 NA intron (NM_003799, intron 9 of 11) intron (NM_003799, intron 9 of 11) 21881 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 155-13 chr12 60208497 60208826 + 0.75 NA Intergenic Intergenic 519291 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 182-33 chr3 121114997 121115498 + 0.75 NA intron (NR_145517, intron 6 of 8) intron (NR_145517, intron 6 of 8) 65607 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 176.25-55 chr5 112396420 112396802 + 0.75 NA intron (NM_001347887, intron 1 of 23) MLT1F1|LTR|ERVL-MaLR 22666 NM_001347888 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 124.75-65 chr4 100868805 100869153 + 0.75 NA Intergenic L1PBb|LINE|L1 -193866 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 129-14 chr12 1342751 1343144 + 0.75 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -157544 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 166.75-54 chr6 56049780 56050052 + 0.75 NA Intergenic Intergenic 41746 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 138-72 chr7 1775474 1775828 + 0.75 NA Intergenic L1MD2|LINE|L1 -33341 NR_120509 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 211.25-9 chr10 89010023 89010595 + 0.75 NA intron (NM_152871, intron 4 of 7) intron (NM_152871, intron 4 of 7) -17334 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 183.25-50 chr7 116755199 116755525 + 0.75 NA exon (NM_001324401, exon 6 of 12) exon (NM_001324401, exon 6 of 12) 83166 NM_000245 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 114.25 chr1 18248349 18248571 + 0.75 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 140662 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 113-101 chr8 71312178 71312414 + 0.75 NA intron (NM_001370336, intron 8 of 17) intron (NM_001370336, intron 8 of 17) 44410 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 121-42 chr3 31677502 31677739 + 0.75 NA intron (NM_001174060, intron 7 of 10) intron (NM_001174060, intron 7 of 10) -26593 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 148.75-58 chr6 75894104 75894327 + 0.75 NA intron (NM_001300899, intron 28 of 32) intron (NM_001300899, intron 28 of 32) 144976 NM_001368865 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 218.25-12 chr12 29929099 29929643 + 0.75 NA Intergenic L2a|LINE|L2 -144612 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 126-47 chr2 99075022 99075285 + 0.75 NA intron (NR_146001, intron 11 of 18) intron (NR_146001, intron 11 of 18) 66027 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 193.5-63 chr5 118217329 118217826 + 0.75 NA intron (NR_104997, intron 2 of 2) L1MC2|LINE|L1 -64997 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 113.25-66 chr2 35332937 35333176 + 0.75 NA Intergenic MER101-int|LTR|ERV1 -138349 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 115.5-3 chr1 66262925 66263136 + 0.75 NA intron (NM_001037340, intron 4 of 14) intron (NM_001037340, intron 4 of 14) -69078 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 147.5-55 chr22 26182918 26183239 + 0.75 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 13604 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 279-8 chr16 25228608 25229185 + 0.75 NA TTS (NM_001169) TTS (NM_001169) 11949 NM_001169 343 Hs.176658 NM_001169 ENSG00000103375 AQP8 AQP-8 aquaporin 8 protein-coding 138.25-48 chr2 215755685 215756031 + 0.75 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 37815 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 179.25-31 chr3 178061726 178062031 + 0.75 NA Intergenic MamSINE1|SINE|tRNA-RTE 245013 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 144.75-2 chr1 79400853 79401175 + 0.75 NA Intergenic Intergenic -394284 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 268.5-16 chr2 74585180 74585728 + 0.75 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 31294 NM_001318867 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 184.75-11 chr10 73243906 73244199 + 0.75 NA 3' UTR (NM_173348, exon 14 of 14) 3' UTR (NM_173348, exon 14 of 14) 3203 NM_015190 23234 Hs.408577 NM_015190 ENSG00000213551 DNAJC9 HDJC9|JDD1|SB73 DnaJ heat shock protein family (Hsp40) member C9 protein-coding 121-48 chr3 177746771 177746967 + 0.75 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -69996 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 143.75-2 chr1 25340426 25340844 + 0.75 NA intron (NM_014313, intron 2 of 6) intron (NM_014313, intron 2 of 6) 2301 NM_014313 23585 Hs.705699 NM_014313 ENSG00000183726 TMEM50A IFNRC|SMP1 transmembrane protein 50A protein-coding 256.25 chr1 98755196 98755627 + 0.75 NA intron (NM_015976, intron 8 of 8) L1MEc|LINE|L1 93690 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 121.75-97 chr9 32258203 32258518 + 0.75 NA Intergenic L2c|LINE|L2 -126243 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 122-7 chr1 186098143 186098340 + 0.75 NA intron (NM_031935, intron 68 of 106) L1MA6|LINE|L1 -198032 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 140-2 chr1 224898557 224898846 + 0.75 NA Intergenic Intergenic -30953 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 185.25-40 chr4 121079488 121079810 + 0.75 NA Intergenic MIRb|SINE|MIR -7114 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 162.5-77 chr6 44650812 44651081 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -99065 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 166.75-3 chr1 209641469 209641807 + 0.75 NA intron (NM_001017402, intron 2 of 21) intron (NM_001017402, intron 2 of 21) 9696 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 114.25-9 chr1 181058911 181059173 + 0.75 NA 3' UTR (NM_001194999, exon 7 of 7) 3' UTR (NM_001194999, exon 7 of 7) 25617 NM_001195000 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 130.5-91 chr7 101762701 101762960 + 0.75 NA Intergenic Intergenic -53177 NM_001202544 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 138.75-77 chr8 127321305 127321549 + 0.75 NA intron (NR_117100, intron 5 of 5) L1MEf|LINE|L1 76790 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 115.75-58 chr3 43471049 43471262 + 0.75 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -119193 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 120.75-78 chr5 12523087 12523368 + 0.75 NA Intergenic Intergenic -51630 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 245.25-13 chr19 28372906 28373367 + 0.75 NA Intergenic Intergenic -233552 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 160.75-59 chr7 38481958 38482334 + 0.75 NA intron (NM_001635, intron 5 of 20) L3|LINE|CR1 140569 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 174.25-67 chrX 135587248 135587666 + 0.75 NA Intergenic Intergenic -66783 NR_046740 100874118 Hs.602150 NR_046740 ENSG00000225235 INTS6L-AS1 DDX26B-AS1 INTS6L antisense RNA 1 ncRNA 161-7 chr10 23872167 23872391 + 0.75 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 177552 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 147.5-74 chr6 120662447 120662774 + 0.75 NA Intergenic Intergenic 647431 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 173-42 chr4 104267534 104267839 + 0.75 NA Intergenic Intergenic -223279 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 158.5-58 chr2 119113568 119113853 + 0.75 NA Intergenic Intergenic 45041 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 175.75 chr1 159552911 159553341 + 0.75 NA Intergenic L1MC4|LINE|L1 -17119 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 151.75-82 chr9 80677400 80677874 + 0.75 NA Intergenic L3|LINE|CR1 702614 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 152.5-45 chr17 62082633 62082977 + 0.75 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat -17527 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 143.75-6 chr1 216746637 216746893 + 0.75 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -23293 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 120.75-7 chr10 47257806 47257984 + 0.75 NA Intergenic Intergenic -42302 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 152.5-12 chr10 61672929 61673290 + 0.75 NA intron (NM_001366906, intron 2 of 7) intron (NM_001366906, intron 2 of 7) 10148 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 186-19 chr17 67086728 67087166 + 0.75 NA exon (NM_014877, exon 32 of 33) exon (NM_014877, exon 32 of 33) 42393 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 175-40 chr3 131962092 131962412 + 0.75 NA intron (NM_001289112, intron 1 of 15) L2c|LINE|L2 23679 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 120.25-66 chr7 82331058 82331249 + 0.75 NA intron (NM_000722, intron 3 of 38) MIR|SINE|MIR 112624 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 118.25-66 chr3 196030180 196030396 + 0.75 NA Intergenic L1MA3|LINE|L1 -40009 NR_003264 255812 Hs.566872 NR_003264 ENSG00000185485 SDHAP1 SDHAL1|SDHALP1 succinate dehydrogenase complex flavoprotein subunit A pseudogene 1 pseudo 129.25-31 chr15 71542241 71542512 + 0.75 NA intron (NM_024817, intron 6 of 16) L1MD3|LINE|L1 -4860 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 219.25-18 chr20 52654209 52654599 + 0.75 NA Intergenic L1M5|LINE|L1 33566 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 124.75-56 chr21 33911866 33912096 + 0.75 NA intron (NM_001697, intron 3 of 6) intron (NM_001697, intron 3 of 6) 3823 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 267.5-38 chrX 29955580 29956147 + 0.75 NA 3' UTR (NM_014271, exon 11 of 11) 3' UTR (NM_014271, exon 11 of 11) -259700 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 213-3 chr1 41345705 41346089 + 0.75 NA Intergenic Intergenic -15537 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 134-11 chr1 244067991 244068240 + 0.75 NA Intergenic Intergenic 14910 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 138-2 chr1 43704282 43704556 + 0.75 NA non-coding (NR_033827, exon 2 of 5) non-coding (NR_033827, exon 2 of 5) 2922 NR_033827 100132774 Hs.655569 NR_033827 KDM4A-AS1 - KDM4A antisense RNA 1 ncRNA 152-19 chr12 18328605 18328884 + 0.75 NA intron (NM_001288774, intron 8 of 32) intron (NM_001288774, intron 8 of 32) 67204 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 149.75-22 chr18 34991098 34991392 + 0.75 NA intron (NM_001143827, intron 1 of 7) L1PA16|LINE|L1 12877 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 142-64 chr7 123616837 123617167 + 0.75 NA intron (NM_080928, intron 4 of 9) intron (NM_080928, intron 4 of 9) 7955 NR_111922 102724555 Hs.83916 NR_111922 ENSG00000230442 LOC102724555 - uncharacterized LOC102724555 ncRNA 173.5-44 chr2 83418101 83418608 + 0.75 NA Intergenic L1PB4|LINE|L1 -104460 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 130-3 chr1 117042740 117043053 + 0.75 NA intron (NR_110786, intron 2 of 3) L1ME3|LINE|L1 16594 NR_110786 101929099 Hs.559118 NR_110786 ENSG00000236137 LOC101929099 - uncharacterized LOC101929099 ncRNA 184.75-55 chr8 48621647 48622074 + 0.75 NA intron (NR_105004, intron 1 of 1) MIR|SINE|MIR 1457 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 145.25-28 chr14 94426966 94427277 + 0.75 NA Intergenic Intergenic 25679 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 140-60 chr7 84819934 84820273 + 0.75 NA Intergenic Intergenic 287627 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 126-22 chr12 15039336 15039522 + 0.75 NA Intergenic Intergenic 37596 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 122.5-44 chr19 994537 994745 + 0.75 NA TTS (NM_024100) TTS (NM_024100) -5778 NM_138690 116444 Hs.660378 NM_138690 ENSG00000116032 GRIN3B GluN3B|NR3B glutamate ionotropic receptor NMDA type subunit 3B protein-coding 146.75-23 chr2 32139350 32139662 + 0.75 NA intron (NM_001363875, intron 11 of 15) L1P4|LINE|L1 -26335 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 141.5-79 chr3 111682158 111682477 + 0.75 NA intron (NM_001185106, intron 1 of 4) intron (NM_001185106, intron 1 of 4) -4884 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 157.75-81 chr9 28184569 28184978 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 534532 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 138.75-5 chr1 111576368 111576684 + 0.75 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -12523 NM_001302680 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 113-104 chr8 137414065 137414218 + 0.75 NA promoter-TSS (NR_125428) promoter-TSS (NR_125428) -553 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 140.75-14 chr12 23584559 23585019 + 0.75 NA promoter-TSS (NM_178010) promoter-TSS (NM_178010) -203 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 142.75-9 chr1 195026786 195027054 + 0.75 NA Intergenic AluSz6|SINE|Alu 1061795 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 136-7 chr10 76482139 76482454 + 0.75 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -405748 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 183-56 chr5 2802745 2803066 + 0.75 NA Intergenic Intergenic 50774 NM_178569 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 171-35 chr3 63599393 63599798 + 0.75 NA intron (NM_001130003, intron 4 of 5) Tigger3c|DNA|TcMar-Tigger -49544 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 148.75-19 chr15 58911416 58911647 + 0.75 NA intron (NR_135042, intron 4 of 18) SSU-rRNA_Hsa|rRNA|rRNA 22148 NM_001013843 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 152.25-59 chr7 18398499 18398761 + 0.75 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -97080 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 130.75-20 chr14 44725106 44725346 + 0.75 NA Intergenic MLT1F1|LTR|ERVL-MaLR 73900 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 192-35 chr3 154343270 154343795 + 0.75 NA intron (NM_001038705, intron 3 of 3) intron (NM_001038705, intron 3 of 3) -19035 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 163.5-14 chr11 30485246 30485545 + 0.75 NA intron (NM_001584, intron 3 of 5) MIR|SINE|MIR 95098 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 116-31 chr17 60152194 60152485 + 0.75 NA intron (NR_137422, intron 1 of 11) intron (NR_137422, intron 1 of 11) 2366 NR_137422 762 Hs.89485 NM_000717 ENSG00000167434 CA4 CAIV|Car4|RP17 carbonic anhydrase 4 protein-coding 156.25-47 chr22 49415029 49415399 + 0.75 NA non-coding (NR_110523, exon 5 of 5) non-coding (NR_110523, exon 5 of 5) 128252 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 150 chr1 25086466 25086726 + 0.75 NA Intergenic MIRb|SINE|MIR 63093 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 182.75-13 chr16 25790175 25790540 + 0.75 NA intron (NM_006040, intron 1 of 1) AluSx1|SINE|Alu 98398 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 160-13 chr14 55592836 55593093 + 0.75 NA intron (NM_004986, intron 1 of 41) L1MEi|LINE|L1 12757 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 170-18 chr19 30275558 30275804 + 0.75 NA Intergenic MIR|SINE|MIR -96703 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 157.5 chr1 10488806 10489149 + 0.75 NA intron (NM_004565, intron 1 of 8) L1ME2|LINE|L1 14027 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 124.5-57 chr2 117135803 117135972 + 0.75 NA Intergenic MER4E1|LTR|ERV1 -678804 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 143.25-80 chr9 94829882 94830236 + 0.75 NA intron (NM_032823, intron 5 of 14) L1PA11|LINE|L1 20097 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 143.75-84 chr8 113996699 113996944 + 0.75 NA Intergenic Intergenic -559882 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 150-68 chr6 155579004 155579266 + 0.75 NA Intergenic Intergenic 64291 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 131-42 chr3 170671997 170672266 + 0.75 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -86056 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 232.75-17 chr5 12651892 12652579 + 0.75 NA intron (NR_033383, intron 2 of 3) L1MEc|LINE|L1 -15624 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 138.25-30 chr16 8509098 8509475 + 0.75 NA Intergenic L1PA16|LINE|L1 80552 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 161-38 chr2 55163629 55163912 + 0.75 NA Intergenic Intergenic -25939 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 118-3 chr1 117740820 117741175 + 0.75 NA Intergenic L2c|LINE|L2 134949 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 154.25-73 chrX 79260104 79260352 + 0.75 NA Intergenic MIR|SINE|MIR 89256 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 172.25-36 chr2 160593369 160593813 + 0.75 NA Intergenic L1MB8|LINE|L1 -99784 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 178.75-35 chr21 27132733 27133165 + 0.75 NA Intergenic Intergenic -165861 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 118.5-11 chr1 183737141 183737340 + 0.75 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -67880 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 116.25-77 chr5 153312723 153312923 + 0.75 NA Intergenic Intergenic -177701 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 217.5-24 chr20 10177645 10177994 + 0.75 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -40979 NM_001322904 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 128.75-39 chr2 45129321 45129649 + 0.75 NA Intergenic L2-3_Crp|LINE|L2 -120033 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 159.25-27 chr17 77199371 77199744 + 0.75 NA intron (NM_001143999, intron 8 of 16) intron (NM_001143999, intron 8 of 16) 14344 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 208-41 chr9 11386276 11386597 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 773230 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 117-58 chr4 18423086 18423409 + 0.75 NA Intergenic Intergenic -401372 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 121-36 chr2 64491209 64491604 + 0.75 NA intron (NR_147011, intron 2 of 2) L2a|LINE|L2 5053 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 134-27 chr15 100294458 100294841 + 0.75 NA intron (NM_139057, intron 3 of 21) AluJb|SINE|Alu 47326 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 187.75-35 chr3 107789841 107790139 + 0.75 NA intron (NM_001276286, intron 13 of 16) intron (NM_001276286, intron 13 of 16) 88078 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 161.75-53 chr7 26229394 26229624 + 0.75 NA Intergenic Intergenic 27764 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 236-28 chr5 5276855 5277390 + 0.75 NA intron (NM_139056, intron 18 of 22) MamRep434|DNA|TcMar-Tigger 136792 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 167.25-87 chrX 95392020 95392430 + 0.75 NA Intergenic Intergenic -328999 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 134.25-24 chr15 26414366 26414609 + 0.75 NA Intergenic L1MA3|LINE|L1 214603 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 141.25-64 chr6 61815492 61815774 + 0.75 NA intron (NR_146874, intron 6 of 13) MamSINE1|SINE|tRNA-RTE 241503 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 117.5-103 chrX 83877878 83878044 + 0.75 NA intron (NM_021118, intron 4 of 4) intron (NM_021118, intron 4 of 4) 16815 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 148-13 chr11 113871909 113872155 + 0.75 NA intron (NM_020886, intron 1 of 24) MIR|SINE|MIR 3540 NM_001346253 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 126-46 chr2 96863203 96863468 + 0.75 NA intron (NM_017789, intron 12 of 14) intron (NM_017789, intron 12 of 14) -5319 NM_016466 51239 Hs.709507 NM_016466 ENSG00000213337 ANKRD39 - ankyrin repeat domain 39 protein-coding 187-50 chr5 118091208 118091636 + 0.75 NA intron (NR_104997, intron 2 of 2) L1MCa|LINE|L1 -191152 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 127.5-14 chr1 248524846 248525044 + 0.75 NA Intergenic Intergenic 3298 NM_001013355 391211 Hs.553784 NM_001013355 ENSG00000188558 OR2G6 - olfactory receptor family 2 subfamily G member 6 protein-coding 117-91 chrX 83998954 83999209 + 0.75 NA Intergenic Intergenic 137935 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 177-55 chr7 116893335 116893722 + 0.75 NA intron (NM_006136, intron 3 of 9) intron (NM_006136, intron 3 of 9) 30941 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 166-35 chr20 16313735 16314136 + 0.75 NA intron (NM_024704, intron 24 of 25) L1ME3A|LINE|L1 259513 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 137.25-57 chr4 48933561 48933831 + 0.75 NA Intergenic Intergenic -26868 NM_152398 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 153.25-38 chr3 172945064 172945333 + 0.75 NA intron (NM_031955, intron 6 of 10) intron (NM_031955, intron 6 of 10) 194196 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 124.5-46 chr19 32315064 32315420 + 0.75 NA Intergenic AluJb|SINE|Alu -30368 NM_014910 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 176.75-21 chr2 10635553 10635870 + 0.75 NA intron (NR_048552, intron 12 of 19) L2a|LINE|L2 54264 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 204-15 chr15 25456838 25457174 + 0.75 NA Intergenic L1MEh|LINE|L1 -17950 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 118.25-48 chr2 119951710 119952058 + 0.75 NA intron (NM_002830, intron 18 of 26) intron (NM_002830, intron 18 of 26) -61193 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 176.75-8 chr12 44159854 44160309 + 0.75 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 324000 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 147.75-86 chr8 140658141 140658455 + 0.75 NA non-coding (NR_148038, exon 33 of 33) non-coding (NR_148038, exon 33 of 33) -22665 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 124.25-25 chr13 32701595 32701925 + 0.75 NA intron (NM_015032, intron 17 of 34) intron (NM_015032, intron 17 of 34) 115308 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 178-50 chr7 123351216 123351520 + 0.75 NA Intergenic Intergenic -151397 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 140.25-48 chr22 34541702 34542029 + 0.75 NA Intergenic L1ME1|LINE|L1 456051 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 142.25-39 chr20 15304099 15304380 + 0.75 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 107399 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 186.75-3 chr10 48269503 48269905 + 0.75 NA intron (NM_001018071, intron 1 of 28) intron (NM_001018071, intron 1 of 28) 4992 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 118.5-89 chr6 25126932 25127184 + 0.75 NA intron (NR_027626, intron 2 of 6) MER53|DNA|hAT 10765 NR_002174 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 152.75-20 chr16 62368101 62368364 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR -331794 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 186.5-59 chr8 130744989 130745406 + 0.75 NA Intergenic L1M4a1|LINE|L1 295712 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 178.25-66 chr8 135932858 135933204 + 0.75 NA Intergenic Intergenic 475575 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 168.75-15 chr17 28558047 28558324 + 0.75 NA intron (NM_033198, intron 8 of 11) AluJr|SINE|Alu -5557 NM_005148 9094 Hs.410455 NM_005148 ENSG00000109103 UNC119 HRG4|IMD13|POC7|POC7A unc-119 lipid binding chaperone protein-coding 116.25-52 chr2 162953193 162953398 + 0.75 NA Intergenic Intergenic -114528 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 132.75-69 chr4 32326888 32327195 + 0.75 NA Intergenic Intergenic -23997 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 149.5-101 chr7 131015855 131016191 + 0.75 NA intron (NR_109850, intron 3 of 5) MLT1A|LTR|ERVL-MaLR 91007 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 139.75-41 chr2 102809277 102809506 + 0.75 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 47360 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 172.5-6 chr10 79582150 79582431 + 0.75 NA Intergenic Intergenic -21883 NM_001320813 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 134.25-48 chr21 46406240 46406616 + 0.75 NA intron (NM_001315529, intron 27 of 46) L1M5|LINE|L1 -52463 NM_001353944 23181 Hs.189585 NM_015151 ENSG00000160305 DIP2A C21orf106|DIP2 disco interacting protein 2 homolog A protein-coding 163.75-44 chr3 118365999 118366417 + 0.75 NA Intergenic L1M4b|LINE|L1 -275560 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 196.5-40 chr18 74649798 74650181 + 0.75 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 19026 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 137.75-28 chr15 67224029 67224213 + 0.75 NA intron (NM_001271885, intron 5 of 9) L2a|LINE|L2 30540 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 252-29 chr7 91554007 91554671 + 0.75 NA Intergenic Intergenic 289906 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 130-34 chr2 50840483 50840710 + 0.75 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -144334 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 137.25-81 chr8 137397556 137397803 + 0.75 NA Intergenic L1MC1|LINE|L1 15909 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 248-23 chr8 120513536 120514083 + 0.75 NA intron (NM_022045, intron 17 of 21) intron (NM_022045, intron 17 of 21) 68390 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 189.25-36 chr5 75189920 75190321 + 0.75 NA intron (NM_001164443, intron 9 of 24) AluJb|SINE|Alu 46758 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 177.5-56 chr5 162843024 162843507 + 0.75 NA Intergenic MLT2B3|LTR|ERVL -594306 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 131-4 chr1 101751332 101751598 + 0.75 NA Intergenic L1MA9|LINE|L1 95615 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 138.75-41 chr20 39481490 39481801 + 0.75 NA Intergenic MIR|SINE|MIR -256897 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 142-46 chr3 189478974 189479259 + 0.75 NA Intergenic LTR81B|LTR|Gypsy -117630 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 113.75-14 chr1 235651142 235651471 + 0.75 NA promoter-TSS (NM_001098721).2 promoter-TSS (NM_001098721).2 -552 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 139.25-26 chr14 46728492 46728783 + 0.75 NA Intergenic Intergenic -76856 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 114.5-37 chr17 79644056 79644374 + 0.75 NA Intergenic L1MEf|LINE|L1 -33164 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 150.5-4 chr1 159416437 159416720 + 0.75 NA intron (NM_001363558, intron 3 of 3) L1MA4A|LINE|L1 -15614 NM_001348286 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 178.25-18 chr12 124580663 124581003 + 0.75 NA Intergenic L1MB5|LINE|L1 -13221 NM_001077261 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 115.25-11 chr10 65270237 65270492 + 0.75 NA Intergenic Intergenic -301061 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 139-24 chr17 14433389 14433723 + 0.75 NA Intergenic Intergenic 129816 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 147.75-70 chr6 127591010 127591247 + 0.75 NA intron (NM_001010905, intron 5 of 5) intron (NM_001010905, intron 5 of 5) 13954 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 187.5-56 chr5 6353937 6354282 + 0.75 NA Intergenic L2|LINE|L2 -16817 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 140.25-94 chr9 20965561 20965781 + 0.75 NA intron (NM_017794, intron 37 of 45) L1MB5|LINE|L1 65969 NM_001321883 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 124.75-35 chr17 49326504 49326701 + 0.75 NA intron (NR_135579, intron 1 of 7) MLT1I-int|LTR|ERVL-MaLR -34563 NR_110884 102724596 Hs.559253 NR_110882 ENSG00000248714 LOC102724596 - uncharacterized LOC102724596 ncRNA 158.5-82 chr4 106928062 106928473 + 0.75 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 108046 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 169-18 chr14 62074652 62074915 + 0.75 NA intron (NM_001367661, intron 5 of 8) intron (NM_001367661, intron 5 of 8) -42574 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 177.5-58 chr6 146841570 146841854 + 0.75 NA non-coding (NR_034115, exon 11 of 11) non-coding (NR_034115, exon 11 of 11) -37888 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 194.5-20 chr14 35340676 35340967 + 0.75 NA Intergenic AluSx1|SINE|Alu 48439 NM_002791 5687 Hs.446260 NM_002791 ENSG00000100902 PSMA6 IOTA|PROS27|p27K proteasome subunit alpha 6 protein-coding 167.75-47 chr3 161313907 161314286 + 0.75 NA Intergenic AluY|SINE|Alu 57987 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 142-6 chr1 200908168 200908466 + 0.75 NA intron (NM_001367290, intron 6 of 9) intron (NM_001367290, intron 6 of 9) 13417 NM_001367289 55765 Hs.518997 NM_018265 ENSG00000163362 INAVA C1orf106 innate immunity activator protein-coding 170-4 chr10 125881558 125881953 + 0.75 NA promoter-TSS (NM_018180) promoter-TSS (NM_018180) -463 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 118.5-101 chr7 12281865 12282198 + 0.75 NA Intergenic (TTTTAA)n|Simple_repeat|Simple_repeat 70737 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 127.75-101 chr9 4037138 4037363 + 0.75 NA intron (NM_001042413, intron 4 of 10) MIR|SINE|MIR 114933 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 144-3 chr1 164928236 164928574 + 0.75 NA Intergenic Intergenic -153764 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 166.75-25 chr17 80378865 80379260 + 0.75 NA intron (NM_001256071, intron 54 of 67) AluJb|SINE|Alu -36105 NR_148042 284131 Hs.389678 NM_173627 ENSG00000173818 ENDOV - endonuclease V protein-coding 144.25-3 chr1 116943990 116944289 + 0.75 NA intron (NM_020440, intron 2 of 8) intron (NM_020440, intron 2 of 8) 34223 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 120.5-11 chr10 32367921 32368209 + 0.75 NA intron (NR_104163, intron 1 of 1) intron (NR_104163, intron 1 of 1) 10704 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 141.5-69 chr22 24136735 24137077 + 0.75 NA intron (NM_012295, intron 29 of 36) L1ME4b|LINE|L1 -44581 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 122-70 chr7 50248906 50249205 + 0.75 NA Intergenic L1MEd|LINE|L1 -55009 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 125.5-123 chr8 66693814 66694095 + 0.75 NA intron (NM_001204173, intron 3 of 18) MLT1D|LTR|ERVL-MaLR -18827 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 164.5-47 chr20 53328982 53329242 + 0.75 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 143829 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 144.75-30 chr15 87497029 87497521 + 0.75 NA Intergenic Intergenic -79654 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 144.5-67 chr21 32966347 32966649 + 0.75 NA Intergenic L1MC4a|LINE|L1 7610 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 175.75-55 chr9 99450433 99450762 + 0.75 NA Intergenic Intergenic -75340 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 215.25-7 chr10 118877534 118878032 + 0.75 NA Intergenic L1ME2|LINE|L1 -122813 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 150.25-17 chr13 41013295 41013681 + 0.75 NA intron (NM_001370332, intron 2 of 10) L1ME3|LINE|L1 5828 NM_001370332 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 151.75-37 chr18 60411824 60412148 + 0.75 NA Intergenic Intergenic -39211 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 199.75-18 chr2 41736234 41736582 + 0.75 NA Intergenic Intergenic -141147 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 193-7 chr1 246021861 246022265 + 0.75 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 395349 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 138.75-61 chr5 69186349 69186621 + 0.75 NA Intergenic L1MC4|LINE|L1 -3098 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 114.75-58 chr22 49103040 49103317 + 0.75 NA Intergenic Intergenic 236408 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 223-22 chr2 137476146 137476540 + 0.75 NA intron (NM_001316349, intron 15 of 27) L1MA4A|LINE|L1 451589 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 155.5-33 chr14 62164613 62165068 + 0.75 NA Intergenic L2c|LINE|L2 -24867 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 112.75-34 chr15 92593539 92593715 + 0.75 NA Intergenic Intergenic -21364 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 136.75-64 chr3 115172949 115173182 + 0.75 NA Intergenic Intergenic -25777 NM_001348803 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 137.5-116 chr8 91741709 91742004 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB 275824 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 217.25-14 chr16 6875497 6875861 + 0.75 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 101870 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 117.25-28 chr14 70262517 70262745 + 0.75 NA Intergenic Intergenic -14830 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 153.5-39 chr18 65922196 65922637 + 0.75 NA Intergenic Intergenic 171404 NM_004361 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 188.75-39 chr5 115929549 115929905 + 0.75 NA Intergenic MER41A|LTR|ERV1 -26844 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 194-8 chr11 72794533 72794989 + 0.75 NA Intergenic LTR51|LTR|ERV1 -1056 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 179.25-46 chr7 33738843 33739317 + 0.75 NA Intergenic Intergenic -165835 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 113.75-103 chr8 52430113 52430373 + 0.75 NA Intergenic Intergenic -20364 NM_001352834 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 119.25-33 chr16 81729961 81730283 + 0.75 NA Intergenic AluSp|SINE|Alu -49169 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 161.5-14 chr10 91219258 91219637 + 0.75 NA promoter-TSS (NM_001256549) promoter-TSS (NM_001256549) -704 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 159.75-37 chr3 122598425 122598841 + 0.75 NA intron (NM_001113523, intron 1 of 11) MLT1F|LTR|ERVL-MaLR -16982 NM_152615 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 124-71 chr7 108229332 108229508 + 0.75 NA intron (NM_001371137, intron 7 of 25) FRAM|SINE|Alu 13965 NM_001371182 122-3 chr1 51728954 51729144 + 0.75 NA promoter-TSS (NM_148905) promoter-TSS (NM_148905) -801 NM_148904 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 129.25-47 chr20 41546675 41546898 + 0.75 NA intron (NM_032221, intron 2 of 36) intron (NM_032221, intron 2 of 36) 71591 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 171.5-95 chr9 74703173 74703442 + 0.75 NA Intergenic L1MA4|LINE|L1 87773 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 153.25-17 chr14 26526550 26526877 + 0.75 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 26717 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 197.25-26 chr14 61232061 61232539 + 0.75 NA Intergenic AluSz6|SINE|Alu 49038 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 135-65 chr6 115992338 115992574 + 0.75 NA intron (NM_002031, intron 2 of 7) intron (NM_002031, intron 2 of 7) -46275 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 178.5-44 chr3 7313351 7313734 + 0.75 NA intron (NM_000844, intron 4 of 9) L2a|LINE|L2 221742 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 143.5-9 chr10 54807473 54807791 + 0.75 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -6341 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 160.25-40 chr3 118328696 118329008 + 0.75 NA Intergenic MER85|DNA|PiggyBac -312916 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 150-42 chr20 37277482 37277871 + 0.75 NA Intergenic AluJo|SINE|Alu -11979 NM_001369743 63905 Hs.6126 NM_022077 ENSG00000101363 MANBAL - mannosidase beta like protein-coding 156.5-79 chr7 141765831 141766102 + 0.75 NA TTS (NM_016943) TTS (NM_016943) 1869 NM_016943 50831 Hs.676011 NM_016943 ENSG00000127362 TAS2R3 T2R3 taste 2 receptor member 3 protein-coding 143.75-41 chr17 31349085 31349420 + 0.75 NA intron (NM_001042492, intron 49 of 57) intron (NM_001042492, intron 49 of 57) -27630 NM_001003927 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 157-51 chr5 14294204 14294475 + 0.75 NA intron (NM_007118, intron 6 of 56) intron (NM_007118, intron 6 of 56) 150997 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 163.5-70 chr5 96590370 96590729 + 0.75 NA intron (NR_130776, intron 4 of 4) Charlie17a|DNA|hAT-Charlie -71488 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 116.5-82 chr3 87632759 87632950 + 0.75 NA Intergenic Intergenic -159852 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 192.75-5 chr11 89487571 89488033 + 0.75 NA intron (NM_001291929, intron 1 of 16) intron (NM_001291929, intron 1 of 16) 2958 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 121.5-17 chr10 92240793 92241018 + 0.75 NA intron (NM_014912, intron 1 of 9) intron (NM_014912, intron 1 of 9) 2374 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 113.75-23 chr10 126409874 126410101 + 0.75 NA Intergenic Intergenic 11892 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 143.5-12 chr10 83615269 83615689 + 0.75 NA Intergenic L1M3c|LINE|L1 61610 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 175.5-14 chr11 16062785 16063162 + 0.75 NA intron (NM_017508, intron 8 of 14) MIR3|SINE|MIR -93352 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 225-44 chr8 139904164 139904604 + 0.75 NA intron (NM_001160372, intron 20 of 22) L2c|LINE|L2 196151 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 153.25-37 chr3 172738765 172739096 + 0.75 NA Intergenic Intergenic -11755 NM_001258316 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 123.75-38 chr14 45680900 45681083 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR 34611 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 120-21 chr11 76540265 76540478 + 0.75 NA intron (NM_001300942, intron 18 of 21) intron (NM_001300942, intron 18 of 21) 95346 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 247.5-52 chr9 84003692 84004248 + 0.75 NA 3' UTR (NM_001358294, exon 3 of 3) 3' UTR (NM_001358294, exon 3 of 3) 23165 NM_001358292 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 135.5-61 chr20 44864316 44864655 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -21220 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 179-33 chr2 102624274 102624592 + 0.75 NA intron (NM_003048, intron 1 of 11) intron (NM_003048, intron 1 of 11) 4880 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 269.75-4 chr14 23041238 23041636 + 0.75 NA promoter-TSS (NM_001099780) promoter-TSS (NM_001099780) -775 NM_001099780 122706 Hs.508918 NM_001099780 ENSG00000222028 PSMB11 BETA5T proteasome subunit beta 11 protein-coding 140.75-52 chr6 40553195 40553471 + 0.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 34031 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 132.5-50 chr2 53236649 53236952 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -530983 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 164.75-22 chr14 50542972 50543280 + 0.75 NA intron (NM_001127713, intron 1 of 13) ERVL-E-int|LTR|ERVL 10044 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 187.75-5 chr11 129993628 129994068 + 0.75 NA intron (NM_199437, intron 1 of 20) L1ME3Cz|LINE|L1 -8776 NR_024233 440072 Hs.630600 NM_001007543 LINC00167 C11orf37|NCRNA00167 long intergenic non-protein coding RNA 167 ncRNA 137.5-129 chrX 107849160 107849535 + 0.75 NA intron (NM_052817, intron 2 of 9) intron (NM_052817, intron 2 of 9) 23481 NM_052817 11043 Hs.12256 NM_012216 ENSG00000080561 MID2 FXY2|MRX101|RNF60|TRIM1 midline 2 protein-coding 114.25-76 chr4 47188919 47189179 + 0.75 NA intron (NM_000812, intron 4 of 8) L2c|LINE|L2 157482 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 134.25-88 chr7 100550449 100550796 + 0.75 NA intron (NM_006076, intron 3 of 11) intron (NM_006076, intron 3 of 11) 11419 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 116.5-15 chr11 9552832 9553105 + 0.75 NA Intergenic L1M|LINE|L1 -20702 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 152.25-49 chr5 26620479 26620785 + 0.75 NA Intergenic Intergenic 417954 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 146.5-16 chr11 27423659 27423964 + 0.75 NA intron (NM_018490, intron 1 of 17) intron (NM_018490, intron 1 of 17) -47920 NR_131169 105376671 Hs.568999 NR_131169 ENSG00000254862 LOC105376671 lnc-BBOX1-1 uncharacterized LOC105376671 ncRNA 116.5-33 chr13 60863054 60863294 + 0.75 NA Intergenic Intergenic 190219 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 171.75-9 chr10 75121715 75122044 + 0.75 NA intron (NM_144660, intron 1 of 4) AluSx1|SINE|Alu 10223 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 142.5-33 chr16 14007296 14007608 + 0.75 NA Intergenic L1MB7|LINE|L1 8566 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 156-37 chr19 44822060 44822598 + 0.75 NA TTS (NM_005581) TTS (NM_005581) 13270 NM_005581 4059 Hs.625725 NM_005581 ENSG00000187244 BCAM AU|CD239|LU|MSK19 basal cell adhesion molecule (Lutheran blood group) protein-coding 218.75-32 chr5 130954825 130955377 + 0.75 NA Intergenic MER21C|LTR|ERVL 210155 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 186.75-37 chr4 41008607 41009045 + 0.75 NA intron (NM_004307, intron 6 of 17) MIR|SINE|MIR -151634 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 123-74 chrX 103255954 103256175 + 0.75 NA promoter-TSS (NM_153333) promoter-TSS (NM_153333) -871 NM_001006684 90843 Hs.389734 NM_153333 ENSG00000180964 TCEAL8 WEX3 transcription elongation factor A like 8 protein-coding 126-27 chr14 49875640 49875849 + 0.75 NA Intergenic L1MDa|LINE|L1 -12895 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 118.5-4 chr1 50974067 50974266 + 0.75 NA exon (NM_001262, exon 3 of 3) exon (NM_001262, exon 3 of 3) 3921 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 126.75-40 chr2 41482419 41482677 + 0.75 NA Intergenic Intergenic -395007 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 195.25-2 chr1 90732706 90733017 + 0.75 NA Intergenic Intergenic -15559 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 174.25-15 chr11 13658415 13658708 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -10107 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 199-4 chr1 204557529 204557905 + 0.75 NA 3' UTR (NM_001278519, exon 5 of 5) 3' UTR (NM_001278519, exon 5 of 5) 41311 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 163.75-8 chr1 159675574 159675912 + 0.75 NA Intergenic HAL1|LINE|L1 38846 NM_001329057 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 120-34 chr15 58237997 58238368 + 0.75 NA Intergenic Intergenic 99801 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 198.5-17 chr17 34338119 34338538 + 0.75 NA Intergenic L1PA14|LINE|L1 -18152 NM_005408 6357 Hs.414629 NM_005408 ENSG00000181374 CCL13 CKb10|MCP-4|NCC-1|NCC1|SCYA13|SCYL1 C-C motif chemokine ligand 13 protein-coding 208.75-3 chr1 233815796 233816111 + 0.75 NA Intergenic MER89|LTR|ERV1 -88723 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 130-82 chr8 93530887 93531184 + 0.75 NA intron (NR_033858, intron 7 of 10) L4_C_Mam|LINE|RTE-X 169398 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 130.25-61 chr22 47084329 47084570 + 0.75 NA intron (NM_001284305, intron 11 of 12) MER5A|DNA|hAT-Charlie -168407 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 375-3 chr17_KI270858v1_alt 23445 24147 + 0.75 NA NA Intergenic NA NA 115-42 chr2 145372017 145372393 + 0.75 NA Intergenic L2c|LINE|L2 704238 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 141.5-14 chr10 69364056 69364293 + 0.75 NA intron (NM_033496, intron 3 of 17) L1ME3A|LINE|L1 45327 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 168.5-14 chr11 112420482 112420884 + 0.75 NA Intergenic Intergenic -61549 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 126-58 chr3 28804959 28805282 + 0.75 NA Intergenic Intergenic 229842 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 173.75-39 chr5 84340978 84341507 + 0.75 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 43625 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 120.25-33 chr2 33641748 33641986 + 0.75 NA Intergenic MER21C|LTR|ERVL -42505 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 143.5-108 chr9 84593485 84593765 + 0.75 NA Intergenic Intergenic -74833 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 135.75-113 chr9 108265814 108266051 + 0.75 NA Intergenic Intergenic 590054 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 145.75-43 chr2 193772136 193772479 + 0.75 NA Intergenic Intergenic -571962 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 123.75-80 chr4 40887138 40887347 + 0.75 NA intron (NM_173075, intron 11 of 16) intron (NM_173075, intron 11 of 16) -30050 NM_001166053 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 132.75-36 chr14 43433806 43434041 + 0.75 NA Intergenic Tigger3|DNA|TcMar-Tigger 1073360 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 195-2 chr1 84347817 84348234 + 0.75 NA intron (NM_001134663, intron 3 of 3) intron (NM_001134663, intron 3 of 3) 36776 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 148.5-70 chr4 45486289 45486684 + 0.75 NA Intergenic L2|LINE|L2 637568 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 144.75-54 chr3 87463645 87464004 + 0.75 NA Intergenic L1MA3|LINE|L1 -187240 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 161-63 chr8 16083545 16083933 + 0.75 NA Intergenic L1MA8|LINE|L1 102533 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 113.25-68 chr2 38864901 38865173 + 0.75 NA intron (NM_001329963, intron 2 of 23) L2a|LINE|L2 10897 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 146.5-50 chr2 115110662 115111058 + 0.75 NA intron (NM_001178037, intron 1 of 25) HAL1ME|LINE|L1 46287 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 126-85 chr7 121679677 121680033 + 0.75 NA Intergenic Intergenic -193306 NM_001206839 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 123.75-78 chr3 172079324 172079618 + 0.75 NA intron (NM_001135095, intron 1 of 25) intron (NM_001135095, intron 1 of 25) 38940 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 135.25-60 chr22 39824732 39825154 + 0.75 NA intron (NM_152512, intron 4 of 6) L1MD1|LINE|L1 68817 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 175.25 chr1 19047882 19048185 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 -91357 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 174-18 chr16 78523348 78523893 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 423966 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 152-61 chr8 37166492 37166906 + 0.75 NA Intergenic Intergenic 327214 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 199.25-14 chr14 80084625 80085185 + 0.75 NA Intergenic Intergenic -126514 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 160.25-55 chr8 81880202 81880545 + 0.75 NA Intergenic Intergenic -38087 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 189.25-32 chr4 33367967 33368253 + 0.75 NA Intergenic Intergenic 671783 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 132.25-65 chr3 192906153 192906353 + 0.75 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 11603 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 148.25-20 chr12 83240319 83240603 + 0.75 NA Intergenic AluSx1|SINE|Alu 553306 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 170.75 chr1 8604858 8605298 + 0.75 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -110165 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 266-2 chr10 92825084 92825688 + 0.75 NA Intergenic Intergenic -1445 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 147.75-74 chr7 37100563 37100851 + 0.75 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 102911 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 130.75-18 chr14 31283688 31283966 + 0.75 NA Intergenic Intergenic -76034 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 121.5-46 chr17 51203246 51203503 + 0.75 NA intron (NM_017643, intron 8 of 16) intron (NM_017643, intron 8 of 16) 36652 NM_001018138 4831 Hs.463456 NM_002512 ENSG00000243678 NME2 NDKB|NDPK-B|NDPKB|NM23-H2|NM23B|PUF NME/NM23 nucleoside diphosphate kinase 2 protein-coding 165.5-72 chr5 141832986 141833232 + 0.75 NA Intergenic Intergenic 33093 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 115.25-90 chr7 71040716 71040914 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -91329 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 154.5-26 chr13 27506981 27507258 + 0.75 NA Intergenic Intergenic -56517 NM_001166263 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 200.25-16 chr12 97030771 97031208 + 0.75 NA Intergenic MIR|SINE|MIR 123523 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 207-17 chr15 71850988 71851460 + 0.75 NA intron (NM_006901, intron 37 of 41) intron (NM_006901, intron 37 of 41) 40670 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 230.5-58 chr8 119683283 119683714 + 0.75 NA Intergenic Intergenic -10108 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 123-12 chr11 38967087 38967297 + 0.75 NA Intergenic Intergenic 318334 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 126.5-24 chr11 128417835 128418079 + 0.75 NA Intergenic Intergenic 104353 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 165.25-49 chr5 163028684 163028977 + 0.75 NA Intergenic L1MC1|LINE|L1 -408741 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 134.75-22 chr17 57970854 57971122 + 0.75 NA TTS (NM_007146) TTS (NM_007146) -15576 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 143-29 chr17 17570669 17570988 + 0.75 NA intron (NM_148173, intron 2 of 6) intron (NM_148173, intron 2 of 6) 6668 NM_148173 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 176.5-73 chr5 81231145 81231408 + 0.75 NA Intergenic Intergenic -2044 NM_001099736 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 181-49 chr8 138383498 138383852 + 0.75 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 113586 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 117.5-96 chr8 144220628 144220900 + 0.75 NA intron (NM_001288814, intron 12 of 41) intron (NM_001288814, intron 12 of 41) 41973 NR_107057 102465906 NR_107057 ENSG00000284054 MIR7112 MIR7112-1|MIR7112-2|hsa-mir-7112|hsa-mir-7112-1|hsa-mir-7112-2 microRNA 7112 ncRNA 144.75-13 chr10 52111342 52111556 + 0.75 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 202679 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 146.75-64 chr8 122694476 122694801 + 0.75 NA promoter-TSS (NR_126348) promoter-TSS (NR_126348) -532 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 125-21 chr12 130693144 130693422 + 0.75 NA intron (NM_001351226, intron 1 of 21) A-rich|Low_complexity|Low_complexity 23016 NM_001351230 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 141.25-74 chr8 135574778 135575102 + 0.75 NA intron (NM_006558, intron 5 of 8) MIR|SINE|MIR 117484 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 154.75-23 chr18 6517810 6518112 + 0.75 NA intron (NR_120518, intron 2 of 5) L1MB2|LINE|L1 6545 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 206.5-29 chr2 144293525 144293997 + 0.75 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) 732 NM_001006636 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 340.25-5 chr4 142521632 142522192 + 0.75 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 324623 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 149.25-71 chr9 91438394 91438755 + 0.75 NA Intergenic L1MA9|LINE|L1 -13948 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 179.5-39 chr15 60490535 60490996 + 0.75 NA 3' UTR (NM_002943, exon 11 of 11) 3' UTR (NM_002943, exon 11 of 11) 11587 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 125.5-22 chr10 118944142 118944348 + 0.75 NA Intergenic Intergenic -85469 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 143.25-67 chr5 180958727 180959005 + 0.75 NA Intergenic L1MA8|LINE|L1 -29980 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 113-30 chr16 60431124 60431369 + 0.75 NA Intergenic Intergenic -71453 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 121.5-37 chr15 48576187 48576516 + 0.75 NA intron (NM_000138, intron 6 of 65) L2c|LINE|L2 69437 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 160-5 chr10 90679665 90680162 + 0.75 NA Intergenic Intergenic -139108 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 118.75-26 chr13 58684353 58684711 + 0.75 NA Intergenic Intergenic -451415 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 138.25-73 chr5 35341010 35341233 + 0.75 NA Intergenic MIR|SINE|MIR -110634 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 214.25-36 chr5 39871270 39871738 + 0.75 NA Intergenic AluSx3|SINE|Alu -180787 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 118.25-82 chr5 98557876 98558033 + 0.75 NA Intergenic L3|LINE|CR1 -210678 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 130.25-88 chr8 126169943 126170203 + 0.75 NA Intergenic Intergenic -155422 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 162.25-42 chr6 55662695 55663050 + 0.75 NA Intergenic L1PREC2|LINE|L1 -83658 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 120.75-43 chr2 26676780 26677117 + 0.75 NA Intergenic AluSx1|SINE|Alu -15774 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 152-44 chr3 114789160 114789496 + 0.75 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -30221 NM_001164344 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 268.75-5 chr10 8672492 8672927 + 0.75 NA Intergenic L1MB7|LINE|L1 -78318 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 129.75-29 chr16 4564613 4564905 + 0.75 NA intron (NM_001145011, intron 1 of 15) AluSz6|SINE|Alu 8269 NM_001145011 342346 Hs.684212 NM_001145011 ENSG00000205832 C16orf96 - chromosome 16 open reading frame 96 protein-coding 209.25-11 chr15 62029231 62029567 + 0.75 NA intron (NM_001018088, intron 5 of 81) intron (NM_001018088, intron 5 of 81) 31048 NM_020821 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 125-19 chr12 47120111 47120330 + 0.75 NA intron (NM_001281429, intron 2 of 2) L1MB8|LINE|L1 -40261 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 137-15 chr11 113530083 113530419 + 0.75 NA Intergenic Intergenic -54853 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 136.75-17 chr11 29996158 29996340 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -13856 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 158-59 chr6 92912423 92912862 + 0.75 NA Intergenic Intergenic 506917 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 125-82 chr5 131834077 131834325 + 0.75 NA intron (NM_001303622, intron 11 of 12) L1MA9|LINE|L1 -37184 NM_133372 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 123.75-92 chr6 124524431 124524693 + 0.75 NA intron (NM_001300738, intron 4 of 7) MIRc|SINE|MIR 241557 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 125.5-36 chr12 123573345 123573561 + 0.75 NA Intergenic AluSx|SINE|Alu 10874 NR_110049 101927415 Hs.636524 NR_110049 TMED2-DT - TMED2 divergent transcript ncRNA 124.75-76 chr6 63221197 63221363 + 0.75 NA Intergenic Intergenic 98697 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 128.25-61 chr5 44342539 44342831 + 0.75 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -46047 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 209 chr1 199645515 199645816 + 0.75 NA Intergenic L1ME1|LINE|L1 -382045 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 123.5-105 chr8 50608205 50608401 + 0.75 NA intron (NR_135797, intron 15 of 20) L1ME1|LINE|L1 444172 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 184-7 chr10 36644738 36645194 + 0.75 NA Intergenic L2c|LINE|L2 -480891 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 198-32 chr4 60457821 60458130 + 0.75 NA Intergenic Intergenic -464644 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 127.75-49 chr2 226566708 226566944 + 0.75 NA Intergenic Intergenic 91967 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 116.75-14 chr11 101461551 101461752 + 0.75 NA intron (NM_004621, intron 10 of 12) intron (NM_004621, intron 10 of 12) 58254 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 131.25-35 chr15 92842280 92842500 + 0.75 NA Intergenic Intergenic -40453 NR_037601 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 137-13 chr11 60006580 60006863 + 0.75 NA Intergenic L1PA8|LINE|L1 -17082 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 198-39 chr4 165745161 165745531 + 0.75 NA intron (NR_121676, intron 4 of 5) intron (NR_121676, intron 4 of 5) -2275 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 150.25-49 chr3 57707348 57707679 + 0.75 NA Intergenic Intergenic 14308 NR_135550 101929159 Hs.434396 NR_135550 ENSG00000241933 DENND6A-DT - DENND6A divergent transcript ncRNA 180.5-84 chr7 108296271 108296586 + 0.75 NA intron (NM_001371171, intron 3 of 28) intron (NM_001371171, intron 3 of 28) 32098 NM_001371178 126.5-52 chr2 127045746 127045988 + 0.75 NA Intergenic Intergenic 36198 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 147-31 chr17 51658587 51658970 + 0.75 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 223351 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 141.5-67 chr20 47672902 47673221 + 0.75 NA intron (NM_198596, intron 10 of 20) intron (NM_198596, intron 10 of 20) 113003 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 134.5-77 chr5 109370995 109371333 + 0.75 NA intron (NM_014819, intron 4 of 9) MER58D|DNA|hAT-Charlie 38810 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 162-11 chr15 57756628 57757020 + 0.75 NA Intergenic MIRb|SINE|MIR 50110 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 209.5-29 chr3 127083395 127083797 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR 95002 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 154.25-71 chrUn_KI270515v1 472 750 + 0.75 NA NA ALR/Alpha|Satellite|centr NA NA 128.75-81 chr7 45684531 45684747 + 0.75 NA intron (NM_021116, intron 11 of 19) L1M3|LINE|L1 84379 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 131-77 chr8 32771451 32771778 + 0.75 NA 3' UTR (NM_001159995, exon 11 of 11) 3' UTR (NM_001159995, exon 11 of 11) 49779 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 157.5-87 chr6 17609027 17609311 + 0.75 NA 3' UTR (NM_016255, exon 5 of 5) 3' UTR (NM_016255, exon 5 of 5) 8867 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 158-31 chr2 142957720 142958013 + 0.75 NA intron (NM_001199241, intron 8 of 14) intron (NM_001199241, intron 8 of 14) 80202 NM_003937 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 113-57 chr21 10697186 10697351 + 0.75 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 175754 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 158-73 chrX 136390922 136391203 + 0.75 NA intron (NM_153834, intron 16 of 25) intron (NM_153834, intron 16 of 25) 90099 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 184.5-29 chr15 59643423 59643765 + 0.75 NA intron (NM_001320930, intron 4 of 5) AluSx|SINE|Alu 13711 NM_001320929 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 196.75-5 chr10 104793722 104794029 + 0.75 NA intron (NM_014978, intron 1 of 26) L2|LINE|L2 -127659 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 152.5-74 chr3 145215593 145215812 + 0.75 NA Intergenic MIR3|SINE|MIR 853483 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 127-91 chr8 19670890 19671181 + 0.75 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) 11548 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 123.5-30 chr13 64537987 64538301 + 0.75 NA Intergenic LTR54|LTR|ERV1 -462133 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 167.75-22 chr14 63086651 63087083 + 0.75 NA Intergenic L1MB8|LINE|L1 -41409 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 124-13 chr11 114685448 114685717 + 0.75 NA intron (NM_182495, intron 2 of 5) MLT1A0|LTR|ERVL-MaLR 7055 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 116.75-26 chr14 86500934 86501232 + 0.75 NA Intergenic L1M5|LINE|L1 -404695 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 139.5-110 chr9 16720750 16721045 + 0.75 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -5917 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 194.5-57 chr4 170307082 170307401 + 0.75 NA Intergenic Intergenic 80650 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 124-72 chr7 113453552 113453777 + 0.75 NA Intergenic Intergenic -335082 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 173.5-90 chr6 53962991 53963411 + 0.75 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 33219 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 123.5-106 chr8 74137302 74137467 + 0.75 NA Intergenic AluSx|SINE|Alu 145992 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 194.5-82 chr9 91403000 91403311 + 0.75 NA Intergenic LTR85a|LTR|Gypsy? 20677 NM_005384 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 163-23 chr2 27732899 27733142 + 0.75 NA intron (NR_160725, intron 2 of 2) AluSq2|SINE|Alu 16897 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 210-11 chr16 74144023 74144541 + 0.75 NA Intergenic Intergenic 71239 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 164-53 chr6 152127858 152128144 + 0.75 NA 3' UTR (NM_001328100, exon 7 of 7) 3' UTR (NM_001328100, exon 7 of 7) 40286 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 120-70 chr4 105755567 105755829 + 0.75 NA intron (NM_001370181, intron 5 of 11) intron (NM_001370181, intron 5 of 11) 44885 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 208.5 chr1 42969677 42970116 + 0.75 NA intron (NR_033967, intron 1 of 3) AluSx|SINE|Alu 10847 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 128.5-75 chr5 76296959 76297261 + 0.75 NA intron (NM_014979, intron 9 of 12) intron (NM_014979, intron 9 of 12) -106175 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 113.25-60 chr18 60097425 60097659 + 0.75 NA Intergenic L1MA4|LINE|L1 197546 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 169-43 chr4 83820053 83820335 + 0.75 NA Intergenic Intergenic 284086 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 283.5-19 chr6 96334417 96334836 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -187180 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 267.5-19 chr3 140724522 140725052 + 0.75 NA Intergenic Intergenic 46723 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 137.5-78 chr3 103127870 103128161 + 0.75 NA Intergenic Intergenic 396101 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 221.75-6 chr14 32990254 32990784 + 0.75 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 51640 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 172-13 chr14 67952586 67952965 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 129183 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 163.5-37 chr18 56382228 56382568 + 0.75 NA Intergenic Intergenic -191136 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 125.75-71 chr8 32078763 32079005 + 0.75 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 52666 NR_104157 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 138.75-14 chr13 26304849 26305229 + 0.75 NA intron (NM_001318368, intron 1 of 12) L1MEg|LINE|L1 50910 NM_001318368 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 199.25-29 chr3 142692096 142692622 + 0.75 NA intron (NM_001145319, intron 10 of 15) intron (NM_001145319, intron 10 of 15) -31675 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 113.5-127 chr9 8177639 8178030 + 0.75 NA Intergenic L2|LINE|L2 -378056 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 132.25-94 chr9 118031667 118032003 + 0.75 NA Intergenic MIR|SINE|MIR 327432 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 153.25-9 chr10 86422557 86422867 + 0.75 NA Intergenic L1M5|LINE|L1 -55917 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 116.5-12 chr10 64426729 64426927 + 0.75 NA Intergenic L1MC4a|LINE|L1 -398700 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 157.75-29 chr16 12834286 12834511 + 0.75 NA Intergenic Intergenic -30511 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 161-29 chr17 62309271 62309700 + 0.75 NA Intergenic L2c|LINE|L2 -33830 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 140-30 chr2 42105010 42105246 + 0.75 NA Intergenic MER102a|DNA|hAT-Charlie 57107 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 170.75-4 chr1 45046128 45046444 + 0.75 NA intron (NM_020883, intron 5 of 13) L2a|LINE|L2 34032 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 156.25-29 chr18 22513465 22513752 + 0.75 NA Intergenic L1PA13|LINE|L1 -95693 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 157.5-44 chr2 57763014 57763248 + 0.75 NA Intergenic Intergenic -144520 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 123.5-67 chr3 111506019 111506374 + 0.75 NA Intergenic L1ME1|LINE|L1 -36001 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 120.75-58 chr21 22633641 22633842 + 0.75 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -445543 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 153-15 chr2 15514107 15514559 + 0.75 NA intron (NR_052013, intron 9 of 50) intron (NR_052013, intron 9 of 50) 47001 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 115.75-67 chr4 12809096 12809297 + 0.75 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 585745 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 137-74 chr9 27166866 27167105 + 0.75 NA intron (NM_001290077, intron 2 of 21) L1MEd|LINE|L1 57844 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 202.25-9 chr13 32123461 32123811 + 0.75 NA intron (NM_023037, intron 4 of 60) intron (NM_023037, intron 4 of 60) 91862 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 143.75-12 chr10 72590779 72591115 + 0.75 NA intron (NM_006077, intron 1 of 11) L1M4c|LINE|L1 35132 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 219.25-3 chr1 213320901 213321477 + 0.75 NA Intergenic Intergenic 269948 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 127.75-83 chr6 111598329 111598532 + 0.75 NA non-coding (NR_034108, exon 4 of 4) non-coding (NR_034108, exon 4 of 4) 7448 NM_147686 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 150.75-13 chr14 43016466 43016780 + 0.75 NA Intergenic Intergenic 1409767 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 158.5-6 chr1 109737829 109738115 + 0.75 NA intron (NM_000849, intron 6 of 8) intron (NM_000849, intron 6 of 8) 3066 NR_024537 2947 Hs.2006 NM_000849 ENSG00000134202 GSTM3 GST5|GSTB|GSTM3-3|GTM3 glutathione S-transferase mu 3 protein-coding 142-13 chr11 102143676 102144031 + 0.75 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 31405 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 151.25-15 chr13 49853738 49854121 + 0.75 NA Intergenic L1ME3F|LINE|L1 -36480 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 159-61 chr8 90775781 90776062 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15854 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 187-65 chr9 85268021 85268290 + 0.75 NA Intergenic Intergenic 473874 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 187.25-9 chr1 238480650 238481067 + 0.75 NA non-coding (NR_015407, exon 2 of 2) non-coding (NR_015407, exon 2 of 2) 5159 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 175-13 chr12 97299386 97299661 + 0.75 NA Intergenic MIRb|SINE|MIR -163253 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 147.25-65 chr7 114863435 114863649 + 0.75 NA Intergenic Intergenic -58612 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 122.25-67 chr4 14619291 14619591 + 0.75 NA intron (NR_126435, intron 3 of 6) L2c|LINE|L2 268728 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 116.75-66 chr6 44142383 44142571 + 0.75 NA intron (NM_001318792, intron 10 of 23) AluSx4|SINE|Alu 14923 NM_018426 55362 Hs.414473 NM_018426 ENSG00000137216 TMEM63B C6orf110 transmembrane protein 63B protein-coding 194.25-22 chr18 59602087 59602431 + 0.75 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 95164 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 151.75-16 chr12 2713854 2714178 + 0.75 NA Intergenic Intergenic -22859 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 114.5-83 chr5 82500469 82500826 + 0.75 NA Intergenic Intergenic 221185 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 127-27 chr13 66851221 66851434 + 0.75 NA intron (NR_046527, intron 1 of 5) intron (NR_046527, intron 1 of 5) 26158 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 144.25-78 chr8 106641822 106642078 + 0.75 NA intron (NM_018002, intron 3 of 15) FLAM_A|SINE|Alu -15858 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 188-36 chr6 51169471 51169759 + 0.75 NA Intergenic L1PB4|LINE|L1 350744 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 190.25-51 chr8 36867315 36867623 + 0.75 NA intron (NM_001031836, intron 19 of 26) intron (NM_001031836, intron 19 of 26) 83095 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 143-72 chr8 65394156 65394481 + 0.75 NA Intergenic Intergenic 168348 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 132.25-10 chr10 68538215 68538433 + 0.75 NA Intergenic ERVL47-int|LTR|ERVL -10801 NM_001324312 8034 Hs.180408 NM_152707 ENSG00000122912 SLC25A16 D10S105E|GDA|GDC|HGT.1|ML7|hML7 solute carrier family 25 member 16 protein-coding 142-48 chr4 64788728 64788983 + 0.75 NA Intergenic Intergenic 215645 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 160.5-18 chr14 50021738 50022119 + 0.75 NA intron (NR_131171, intron 6 of 8) L3|LINE|CR1 -14408 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 138.25-68 chr4 97471518 97471780 + 0.75 NA intron (NR_102713, intron 4 of 5) intron (NR_102713, intron 4 of 5) 104723 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 168-17 chr10 120525082 120525437 + 0.75 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) 68305 NM_001318166 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 192.5-27 chr2 49410994 49411361 + 0.75 NA Intergenic Intergenic -256650 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 225-25 chr4 177883812 177884191 + 0.75 NA intron (NR_108092, intron 1 of 1) (TTAT)n|Simple_repeat|Simple_repeat 23935 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 210.25-3 chr1 109554696 109555185 + 0.75 NA intron (NM_006496, intron 1 of 8) L1PB1|LINE|L1 6325 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 186.25-47 chr7 23280543 23280943 + 0.75 NA Intergenic Intergenic -18596 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 149.5-46 chr18 66505742 66506023 + 0.75 NA intron (NM_001271028, intron 9 of 9) MIR|SINE|MIR 98208 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 155.5-39 chr16 73211652 73211917 + 0.75 NA Intergenic Intergenic -67337 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 224.5-36 chr7 39269900 39270248 + 0.75 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 59060 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 117.5-54 chr2 179795330 179795543 + 0.75 NA intron (NR_148056, intron 1 of 9) intron (NR_148056, intron 1 of 9) -48926 NM_001113397 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 148.5-64 chr3 117469311 117469521 + 0.75 NA Intergenic Intergenic 221509 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 155-57 chr7 74663242 74663551 + 0.75 NA intron (NM_001163636, intron 1 of 33) AluSz|SINE|Alu 5678 NM_001518 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 134.5-48 chr2 220945515 220945809 + 0.75 NA Intergenic Intergenic 626642 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 113.75-5 chr1 67368144 67368343 + 0.75 NA intron (NM_001258215, intron 10 of 13) intron (NM_001258215, intron 10 of 13) 60879 NR_047583 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 118.25-73 chr5 17176722 17176999 + 0.75 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -20868 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 117.5-24 chr14 78960374 78960572 + 0.75 NA intron (NR_073547, intron 10 of 20) intron (NR_073547, intron 10 of 20) -239509 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 125-77 chr5 2745040 2745231 + 0.75 NA TTS (NM_001134222) TTS (NM_001134222) 6542 NM_001134222 153572 Hs.282089 NM_033267 ENSG00000170561 IRX2 IRXA2 iroquois homeobox 2 protein-coding 121.25-52 chr4 114023966 114024178 + 0.75 NA Intergenic Intergenic -44425 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 138-78 chr8 10701503 10701788 + 0.75 NA Intergenic Intergenic -27646 NR_146188 102723313 Hs.583894 NR_146188 LOC102723313 - uncharacterized LOC102723313 ncRNA 235.5-62 chr9 109236870 109237445 + 0.75 NA intron (NM_019114, intron 15 of 25) L3|LINE|CR1 -69866 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 129.75-45 chr20 17660397 17660701 + 0.75 NA intron (NM_004587, intron 1 of 24) intron (NM_004587, intron 1 of 24) 21693 NM_001365613 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 159.5-37 chr19 53035200 53035525 + 0.75 NA Intergenic Intergenic -9378 NM_001191055 100271846 Hs.420445 NM_001191055 ENSG00000268964 ERVV-2 ENVV2|HERV-V2 endogenous retrovirus group V member 2, envelope protein-coding 165-19 chr14 67250844 67251145 + 0.75 NA intron (NM_001256550, intron 1 of 14) MIRb|SINE|MIR 9559 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 218.5-3 chr1 81385324 81385723 + 0.75 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 79128 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 143.75-34 chr14 63804065 63804399 + 0.75 NA Intergenic L1PREC2|LINE|L1 -48733 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 161.25-16 chr12 27058423 27058729 + 0.75 NA Intergenic (TAAT)n|Simple_repeat|Simple_repeat 23946 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 179.5-70 chr4 32100318 32100731 + 0.75 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -78102 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 156.5-28 chr2 4585700 4586063 + 0.75 NA Intergenic L1M4|LINE|L1 70341 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 171.5-11 chr10 128356850 128357181 + 0.75 NA Intergenic L1PA10|LINE|L1 71065 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 130.25-35 chr17 44381989 44382282 + 0.75 NA intron (NM_000419, intron 12 of 29) intron (NM_000419, intron 12 of 29) 7514 NM_000419 3674 Hs.411312 NM_000419 ENSG00000005961 ITGA2B BDPLT16|BDPLT2|CD41|CD41B|GP2B|GPIIb|GT|GTA|HPA3|PPP1R93 integrin subunit alpha 2b protein-coding 132.25-44 chr2 59814070 59814316 + 0.75 NA Intergenic Intergenic 568843 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 153.5-4 chr1 114257069 114257545 + 0.75 NA Intergenic Intergenic -103438 NM_001366225 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 127-28 chr14 30326618 30326854 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -232387 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 133.25-36 chr19 34008262 34008555 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -164096 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 133-55 chr6 44491793 44492023 + 0.75 NA Intergenic MER21B|LTR|ERVL 56267 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 115.5-62 chr3 149589713 149589910 + 0.75 NA intron (NM_001348362, intron 5 of 9) (GAAT)n|Simple_repeat|Simple_repeat 68214 NM_015472 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 115.25-78 chr5 64309470 64309751 + 0.75 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 143767 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 138.25-34 chr16 83592239 83592470 + 0.75 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 84008 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 122.75-21 chr13 80847468 80847792 + 0.75 NA Intergenic L1MC2|LINE|L1 -170761 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 201-15 chr13 66310855 66311200 + 0.75 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 92777 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 133.5-51 chr2 178297809 178298104 + 0.75 NA intron (NM_001201480, intron 2 of 25) L1MB3|LINE|L1 -22286 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 141.75-12 chr11 61594950 61595261 + 0.75 NA intron (NR_110189, intron 1 of 3) MIR|SINE|MIR 6611 NR_110189 101927495 Hs.553866 NR_110189 ENSG00000250230 LOC101927495 - uncharacterized LOC101927495 ncRNA 244.75-15 chr22 49280704 49281128 + 0.75 NA Intergenic L1M4|LINE|L1 262550 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 187.25-12 chr10 78595201 78595625 + 0.75 NA Intergenic LTR16E2|LTR|ERVL 328071 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 158.75-55 chr5 53313446 53313725 + 0.75 NA Intergenic Intergenic -167044 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 122.25-12 chr10 103958104 103958388 + 0.75 NA Intergenic MLT1G1|LTR|ERVL-MaLR -8894 NM_014720 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 128.25-56 chr4 64611966 64612297 + 0.75 NA Intergenic L1PB2|LINE|L1 -202671 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 195.75-20 chr17 54917417 54917794 + 0.75 NA intron (NM_001321173, intron 7 of 9) intron (NM_001321173, intron 7 of 9) 16753 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 147-10 chr10 67458493 67458806 + 0.75 NA intron (NM_001127384, intron 5 of 17) AluSz6|SINE|Alu -55239 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 131-80 chr8 108442877 108443308 + 0.75 NA promoter-TSS (NM_001329493) promoter-TSS (NM_001329493) -491 NM_001329495 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 149.5-98 chr7 50396108 50396307 + 0.75 NA intron (NM_001220765, intron 6 of 6) HAL1b|LINE|L1 54143 NM_001346563 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 130.25-75 chr5 60069872 60070100 + 0.75 NA intron (NM_001349243, intron 2 of 16) L1MB1|LINE|L1 -176260 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 147-79 chr8 136654640 136654995 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 124019 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 137.75-61 chr4 24739442 24739717 + 0.75 NA Intergenic Intergenic -55994 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 145.75-40 chr2 168033309 168033606 + 0.75 NA intron (NM_013233, intron 14 of 17) intron (NM_013233, intron 14 of 17) -92313 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 147.75-28 chr16 3903493 3903742 + 0.75 NA Intergenic AluSz|SINE|Alu -22904 NM_004380 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 138-40 chr2 152509464 152509709 + 0.75 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 174412 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 127-73 chr4 113061660 113061892 + 0.75 NA intron (NM_001354232, intron 1 of 46) L1MA2|LINE|L1 12123 NM_001148 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 198.75-16 chr18 70217730 70218067 + 0.75 NA Intergenic L2a|LINE|L2 -12211 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 122.5 chr1 34548644 34548836 + 0.75 NA Intergenic HAL1|LINE|L1 120954 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 218.25-49 chr9 9030751 9031149 + 0.75 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 172932 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 132.25-18 chr11 113776405 113776687 + 0.75 NA Intergenic Intergenic -2854 NM_004724 9183 Hs.503886 NM_004724 ENSG00000086827 ZW10 HZW10|KNTC1AP zw10 kinetochore protein protein-coding 256.5-41 chr9 77561887 77562377 + 0.75 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 86190 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 200.25-6 chr10 4357810 4358125 + 0.75 NA Intergenic Intergenic -26279 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 158.25-35 chr3 129841661 129842017 + 0.75 NA intron (NM_001349263, intron 2 of 7) THE1D|LTR|ERVL-MaLR -47227 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 165-33 chr2 169325599 169325856 + 0.75 NA intron (NM_004525, intron 1 of 78) intron (NM_004525, intron 1 of 78) 36807 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 154.25-20 chr12 20104895 20105189 + 0.75 NA Intergenic Intergenic 22859 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 194-21 chr2 195688619 195688892 + 0.75 NA intron (NM_020342, intron 3 of 9) intron (NM_020342, intron 3 of 9) 31529 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 123.5-91 chr5 111760982 111761259 + 0.75 NA intron (NM_001142474, intron 2 of 3) MIRb|SINE|MIR -2902 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 152.5-90 chr6 40804063 40804451 + 0.75 NA Intergenic MIR3|SINE|MIR -216893 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 124.75-68 chr5 145703066 145703420 + 0.75 NA Intergenic Intergenic 132099 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 169-33 chr20 55733161 55733549 + 0.75 NA Intergenic Intergenic 272164 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 120.25-80 chr9 135090604 135090812 + 0.75 NA intron (NM_001282611, intron 2 of 5) intron (NM_001282611, intron 2 of 5) 3040 NM_001282611 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 124-26 chr2 100166094 100166434 + 0.75 NA Intergenic L1ME3A|LINE|L1 -23674 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 151.5-23 chr12 10081112 10081454 + 0.75 NA exon (NM_016511, exon 3 of 6) exon (NM_016511, exon 3 of 6) 17702 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 122.25-22 chr11 119880162 119880362 + 0.75 NA Intergenic Intergenic 150679 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 116.5-30 chr12 123660242 123660586 + 0.75 NA 3' UTR (NM_001271868, exon 12 of 12) 3' UTR (NM_001271868, exon 12 of 12) -10699 NM_024809 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 123.5-58 chr20 44832829 44833081 + 0.75 NA Intergenic Intergenic -22409 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 188.75-28 chr3 41346896 41347319 + 0.75 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 147602 NM_001098210 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 118.5-3 chr1 39461000 39461321 + 0.75 NA intron (NM_012090, intron 87 of 92) L2|LINE|L2 -30476 NM_181809 353500 Hs.472497 NM_181809 ENSG00000183682 BMP8A - bone morphogenetic protein 8a protein-coding 157.75-27 chr15 62801882 62802311 + 0.75 NA intron (NM_015059, intron 47 of 55) L1MA2|LINE|L1 -21861 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 177.25-3 chr1 211372413 211372917 + 0.75 NA exon (NM_004619, exon 11 of 11) exon (NM_004619, exon 11 of 11) -10090 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 124.25-83 chr8 141837883 141838202 + 0.75 NA Intergenic L1MEf|LINE|L1 -51729 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 121.5-3 chr1 64717674 64717959 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -27157 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 133.25-31 chr17 49709500 49709739 + 0.75 NA TTS (NM_030802) TTS (NM_030802) -1655 NM_001278784 10237 Hs.154073 NM_005827 ENSG00000121073 SLC35B1 UGTREL1 solute carrier family 35 member B1 protein-coding 172.5 chr1 17910360 17910803 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -155076 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 224-28 chr6 75341281 75341654 + 0.75 NA intron (NM_001300866, intron 4 of 6) L1M5|LINE|L1 -41719 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 190-28 chr2 161901460 161901833 + 0.75 NA intron (NM_001354443, intron 12 of 25) intron (NM_001354443, intron 12 of 25) 172569 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 150.5-14 chr12 1159086 1159349 + 0.75 NA intron (NR_027948, intron 7 of 19) MER1B|DNA|hAT-Charlie 131469 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 237.5-20 chr2 16404615 16405144 + 0.75 NA Intergenic Intergenic 260955 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 147-32 chr17 73056451 73056756 + 0.75 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 36085 NM_001352693 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 218.25-4 chr1 166434613 166435125 + 0.75 NA Intergenic Intergenic 55170 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 122-15 chr11 98472345 98472552 + 0.75 NA Intergenic AluJo|SINE|Alu -548501 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 166-51 chr6 97537993 97538245 + 0.75 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 232533 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 243.5-16 chr3 125663657 125664249 + 0.75 NA Intergenic Intergenic -68456 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 170-54 chr8 134581174 134581407 + 0.75 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -16781 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 166.25-27 chr2 29509268 29509701 + 0.75 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) -34107 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 115-26 chr13 62594399 62594595 + 0.75 NA Intergenic Intergenic 202195 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 167.5-51 chr3 38044026 38044331 + 0.75 NA intron (NM_007335, intron 1 of 36) AluJo|SINE|Alu 4970 NM_007335 9940 Hs.714499 NM_007335 ENSG00000008226 DLEC1 CFAP81|DLC-1|DLC1|F56 DLEC1 cilia and flagella associated protein protein-coding 196.25-53 chr5 19587561 19587991 + 0.75 NA intron (NM_001349559, intron 7 of 12) L1PA11|LINE|L1 298496 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 161.25-43 chr2 95066235 95066517 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger 40668 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 148.75-66 chr7 27894298 27894682 + 0.75 NA intron (NM_175061, intron 3 of 4) intron (NM_175061, intron 3 of 4) 154395 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 116.25-38 chr17 73357517 73357687 + 0.75 NA intron (NM_001144952, intron 40 of 44) intron (NM_001144952, intron 40 of 44) -45601 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 219.5-23 chr19 48862401 48862717 + 0.75 NA intron (NM_020904, intron 3 of 19) AluY|SINE|Alu 6058 NM_020904 57664 Hs.9469 NM_020904 ENSG00000105559 PLEKHA4 PEPP1 pleckstrin homology domain containing A4 protein-coding 163.5-55 chr3 104527175 104527445 + 0.75 NA Intergenic LTR8|LTR|ERV1 -839403 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 156.25-14 chr12 49630029 49630302 + 0.75 NA promoter-TSS (NM_001363607) promoter-TSS (NM_001363607) -379 NM_001363607 25766 Hs.706827 NM_012272 ENSG00000110844 PRPF40B HYPC pre-mRNA processing factor 40 homolog B protein-coding 198.5-24 chr2 77509369 77509824 + 0.75 NA intron (NR_146416, intron 1 of 1) (ATA)n|Simple_repeat|Simple_repeat 12780 NM_024993 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 131-73 chr7 90837713 90838078 + 0.75 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 128079 NM_001287136 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 202.75-28 chr7 43474591 43475045 + 0.75 NA intron (NM_001287059, intron 14 of 27) L1MB4|LINE|L1 47724 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 118-23 chr13 27932150 27932454 + 0.75 NA Intergenic AluSg4|SINE|Alu 12302 NM_000209 3651 Hs.32938 NM_000209 ENSG00000139515 PDX1 GSF|IDX-1|IPF1|IUF1|MODY4|PAGEN1|PDX-1|STF-1 pancreatic and duodenal homeobox 1 protein-coding 148.75-20 chr15 96904351 96904679 + 0.75 NA Intergenic Intergenic 121080 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 152.25-73 chr9 72365637 72366009 + 0.75 NA promoter-TSS (NM_006007) promoter-TSS (NM_006007) -615 NM_006007 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 142-10 chr10 129550823 129551125 + 0.75 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 83733 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 182-43 chr8 143282915 143283332 + 0.75 NA Intergenic Intergenic -1423 NR_120682 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 137.25-76 chr8 80062013 80062319 + 0.75 NA intron (NR_105034, intron 1 of 4) L1MB5|LINE|L1 18664 NM_001025252 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 114.5-96 chr7 29225204 29225433 + 0.75 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -16348 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 148.25-15 chr12 30028615 30028877 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie -243987 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 148-8 chr10 64518247 64518510 + 0.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -307150 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 126.5-14 chr10 59537880 59538132 + 0.75 NA Intergenic Intergenic 171885 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 116.5-66 chr2 176207329 176207561 + 0.75 NA Intergenic AluSz|SINE|Alu -18487 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 130.25-46 chr2 53969400 53969629 + 0.75 NA intron (NM_014614, intron 1 of 46) intron (NM_014614, intron 1 of 46) 1479 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 161-22 chr14 24274356 24274777 + 0.75 NA Intergenic Intergenic -2939 NM_182836 5875 Hs.377992 NM_004581 ENSG00000100949 RABGGTA PTAR3 Rab geranylgeranyltransferase subunit alpha protein-coding 122-29 chr16 87065225 87065501 + 0.75 NA Intergenic Intergenic 7579 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 126-72 chr5 178426638 178427012 + 0.75 NA intron (NM_173465, intron 2 of 28) L1MC1|LINE|L1 163568 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 131.25-14 chr10 23951724 23952010 + 0.75 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -256924 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 174.5-64 chr4 64331365 64331597 + 0.75 NA intron (NM_001363796, intron 2 of 11) L1MEd|LINE|L1 77969 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 160.75-27 chr17 70230850 70231200 + 0.75 NA Intergenic Intergenic 61490 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 161-46 chr3 5579038 5579291 + 0.75 NA Intergenic MLT2B5|LTR|ERVL -328909 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 145-45 chr3 66540355 66540654 + 0.75 NA Intergenic Intergenic -40083 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 178.25-42 chr4 31987345 31987729 + 0.75 NA Intergenic Intergenic -9842 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 163.75-51 chr4 75062339 75062717 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 22180 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 129.25-20 chr12 49298416 49298666 + 0.75 NA 3' UTR (NM_006262, exon 9 of 9) 3' UTR (NM_006262, exon 9 of 9) 3394 NM_006262 5630 Hs.37044 NM_006262 ENSG00000135406 PRPH NEF4|PRPH1 peripherin protein-coding 132.25-12 chr10 125347902 125348132 + 0.75 NA Intergenic MLT2B1|LTR|ERVL -186987 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 112.75-79 chr6 165198235 165198565 + 0.75 NA Intergenic Intergenic 111205 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 129.5-65 chr3 114656819 114657120 + 0.75 NA intron (NM_001348803, intron 6 of 13) L1ME2|LINE|L1 -32024 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 200-17 chr15 82081774 82082145 + 0.75 NA Intergenic MIRb|SINE|MIR -6635 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 145.75-77 chr9 80685005 80685432 + 0.75 NA Intergenic L1MB1|LINE|L1 710195 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 176.25-42 chr3 4505697 4506005 + 0.75 NA intron (NM_001168272, intron 2 of 60) intron (NM_001168272, intron 2 of 60) 12503 NM_001168272 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 134.5-30 chr16 65975881 65976255 + 0.75 NA Intergenic Intergenic -390623 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 124.5-89 chr6 70442063 70442395 + 0.75 NA intron (NM_020819, intron 3 of 20) L1MC5a|LINE|L1 -28271 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 130.25-55 chr20 48924127 48924312 + 0.75 NA intron (NM_006420, intron 1 of 38) intron (NM_006420, intron 1 of 38) 2508 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 136-5 chr1 241810396 241810813 + 0.75 NA Intergenic Intergenic -37587 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 152.25-53 chr5 179175605 179175829 + 0.75 NA intron (NM_014244, intron 5 of 21) L1MD|LINE|L1 115344 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 163-37 chr3 80941753 80942146 + 0.75 NA Intergenic Intergenic -51919 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 123.75-48 chr18 5366167 5366488 + 0.75 NA Intergenic X7A_LINE|LINE|CR1 -69274 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 127.75-23 chr12 99544198 99544414 + 0.75 NA intron (NM_152788, intron 9 of 25) intron (NM_152788, intron 9 of 25) -103447 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 216-33 chr5 159004852 159005234 + 0.75 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 92913 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 164.75-4 chr1 200069669 200069936 + 0.75 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 26977 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 167.75-62 chr7 44232825 44233193 + 0.75 NA intron (NM_172082, intron 14 of 19) intron (NM_172082, intron 14 of 19) 32031 NM_001363678 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 117.5-21 chr14 61227557 61227749 + 0.75 NA Intergenic MIR|SINE|MIR 53685 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 118-19 chr12 41543299 41543456 + 0.75 NA intron (NM_001164595, intron 5 of 9) MIRb|SINE|MIR 105638 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 135.25-47 chr2 101834321 101834639 + 0.75 NA intron (NM_145686, intron 8 of 30) intron (NM_145686, intron 8 of 30) 136773 NM_001242559 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 156.75-49 chr2 166122609 166122976 + 0.75 NA intron (NR_110260, intron 2 of 11) L1M4|LINE|L1 5228 NM_001353951 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 134.5-103 chrX 42610584 42610801 + 0.75 NA Intergenic MIRb|SINE|MIR 167471 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 207.75-39 chr7 38999136 38999422 + 0.75 NA intron (NR_138047, intron 3 of 6) L2a|LINE|L2 14288 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 122.25-20 chr11 93739813 93740192 + 0.75 NA intron (NR_146091, intron 1 of 13) intron (NR_146091, intron 1 of 13) 1493 NM_024116 79101 Hs.355750 NM_024116 ENSG00000166012 TAF1D JOSD3|RAFI41|TAF(I)41|TAFI41 TATA-box binding protein associated factor, RNA polymerase I subunit D protein-coding 129.75-35 chr18 8910454 8910711 + 0.75 NA Intergenic MER41B|LTR|ERV1 -192117 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 173.25-70 chr9 115773768 115774087 + 0.75 NA Intergenic Intergenic -29688 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 130.5-61 chr3 89101042 89101224 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -6488 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 169.25-57 chr9 18491924 18492266 + 0.75 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 17942 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 188.75-33 chr4 99451424 99451814 + 0.75 NA Intergenic L1PA14|LINE|L1 -16109 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 138.5-93 chr6 119174091 119174390 + 0.75 NA Intergenic Intergenic -25047 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 155.75-63 chr6 164615846 164616114 + 0.75 NA Intergenic L1ME1|LINE|L1 206083 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 125.75-76 chr8 110262954 110263243 + 0.75 NA Intergenic L3|LINE|CR1 -287327 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 253.25-32 chr8 56444256 56444654 + 0.75 NA intron (NM_001135690, intron 3 of 3) intron (NM_001135690, intron 3 of 3) -1352 NR_125813 101929415 Hs.701520 NR_125813 ENSG00000254254 LOC101929415 - uncharacterized LOC101929415 ncRNA 331-4 chr13 56148138 56148830 + 0.75 NA Intergenic Intergenic 974030 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 167.5-38 chr2 66864279 66864637 + 0.75 NA Intergenic L3|LINE|CR1 -39978 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 203.75-30 chr4 30861158 30861536 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 140978 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 147.5-57 chr3 29833990 29834278 + 0.75 NA intron (NM_001003792, intron 6 of 13) L1M3c|LINE|L1 100022 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 134.25-96 chr8 136577658 136577883 + 0.75 NA intron (NR_147196, intron 2 of 5) (TG)n|Simple_repeat|Simple_repeat 46972 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 126-25 chr13 66019807 66020052 + 0.75 NA Intergenic Intergenic -53500 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 162-49 chr5 164531421 164531663 + 0.75 NA intron (NR_105065, intron 2 of 3) Kanga1a|DNA|TcMar-Tc2 61263 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 120.5-95 chr6 135586112 135586338 + 0.75 NA intron (NR_152845, intron 2 of 4) L2a|LINE|L2 88424 NR_152845 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 175.25-24 chr18 6443854 6444232 + 0.75 NA Intergenic Intergenic -28784 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 121.25-57 chr5 106818031 106818343 + 0.75 NA intron (NR_104671, intron 3 of 3) intron (NR_104671, intron 3 of 3) 192827 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 213.25-36 chr8 29976769 29977097 + 0.75 NA Intergenic Intergenic -19585 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 217.25-6 chr10 84855124 84855501 + 0.75 NA Intergenic L1ME1|LINE|L1 343593 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 118-12 chr10 116712320 116712495 + 0.75 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 30159 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 177.25-10 chr12 13371946 13372388 + 0.75 NA non-coding (NR_036555, exon 3 of 3) non-coding (NR_036555, exon 3 of 3) 4578 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 178.25-21 chr17 27086579 27086969 + 0.75 NA intron (NR_135673, intron 1 of 3) L1M2|LINE|L1 2467 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 120.25-31 chr17 82554169 82554389 + 0.75 NA intron (NM_004514, intron 1 of 8) intron (NM_004514, intron 1 of 8) 34547 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 180-22 chr14 68787236 68787629 + 0.75 NA TTS (NM_004926) TTS (NM_004926) 6482 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 195.75-37 chr4 35470054 35470466 + 0.75 NA Intergenic Intergenic 773679 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 197.25-19 chr12 38618441 38618928 + 0.75 NA Intergenic Intergenic 286907 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 252.5-24 chr22 47634018 47634444 + 0.75 NA intron (NR_122046, intron 1 of 8) intron (NR_122046, intron 1 of 8) 2557 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 143-65 chr6 137607998 137608377 + 0.75 NA Intergenic Intergenic -57459 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 119.5-69 chr21 15234365 15234686 + 0.75 NA Intergenic L1PA15|LINE|L1 -169525 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 121.75-6 chr10 32935174 32935413 + 0.75 NA intron (NM_002211, intron 2 of 15) intron (NM_002211, intron 2 of 15) 265 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 148-67 chr8 131498887 131499203 + 0.75 NA Intergenic Intergenic -405048 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 127.25-33 chr15 56615891 56616089 + 0.75 NA Intergenic L1MEg|LINE|L1 118096 NM_001288588 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 168-12 chr10 26176592 26176957 + 0.75 NA exon (NM_017433, exon 31 of 35) exon (NM_017433, exon 31 of 35) -39533 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 150.75-35 chr2 114021650 114022004 + 0.75 NA intron (NR_148509, intron 1 of 1) L1ME4b|LINE|L1 -41843 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 283.25-7 chr13 61105939 61106558 + 0.75 NA Intergenic Intergenic 93632 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 126.25-75 chr5 132235487 132235693 + 0.75 NA Intergenic Intergenic -7737 NM_001142598 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 217-26 chr7 7170482 7170930 + 0.75 NA Intergenic AluSx1|SINE|Alu -11909 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 121.25-25 chr15 77021276 77021494 + 0.75 NA intron (NR_135552, intron 3 of 11) intron (NR_135552, intron 3 of 11) 26259 NM_001321136 9051 Hs.129758 NM_003978 ENSG00000140368 PSTPIP1 CD2BP1|CD2BP1L|CD2BP1S|H-PIP|PAPAS|PSTPIP proline-serine-threonine phosphatase interacting protein 1 protein-coding 114.5-63 chr20 43587144 43587342 + 0.75 NA Intergenic AluSp|SINE|Alu -3694 NM_001303459 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 130.25-82 chr8 30257255 30257641 + 0.75 NA Intergenic MIRc|SINE|MIR 101079 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 133.75-22 chr14 45243628 45243866 + 0.75 NA intron (NM_018353, intron 2 of 16) intron (NM_018353, intron 2 of 16) 9455 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 158.25-22 chr18 64745593 64745968 + 0.75 NA Intergenic Intergenic -485725 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 141.25-5 chr1 215056656 215057044 + 0.75 NA intron (NM_001017424, intron 1 of 6) intron (NM_001017424, intron 1 of 6) -25887 NM_014217 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 128.75-44 chr2 123680228 123680539 + 0.75 NA Intergenic Intergenic 344791 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 163.5-31 chr15 42751792 42752151 + 0.75 NA intron (NM_173500, intron 14 of 14) intron (NM_173500, intron 14 of 14) -14843 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 122 chr1 17832101 17832437 + 0.75 NA Intergenic Intergenic 76936 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 125-66 chr3 147751775 147752085 + 0.75 NA Intergenic Intergenic -326229 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 167.25-21 chr13 36697225 36697743 + 0.75 NA 3' UTR (NM_203451, exon 2 of 2) 3' UTR (NM_203451, exon 2 of 2) 23464 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 131-83 chr9 129618307 129618610 + 0.75 NA intron (NM_199350, intron 3 of 6) intron (NM_199350, intron 3 of 6) -1755 NM_001286797 28989 Hs.744027 NM_014064 ENSG00000148335 NTMT1 AD-003|C9orf32|HOMT1A|METTL11A|NRMT|NRMT1|NTM1A N-terminal Xaa-Pro-Lys N-methyltransferase 1 protein-coding 165 chr1 107059072 107059443 + 0.75 NA TTS (NM_018137) TTS (NM_018137) 2583 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 132.25-46 chr2 69163662 69163925 + 0.75 NA intron (NM_032208, intron 13 of 17) intron (NM_032208, intron 13 of 17) 60111 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 170.25-6 chr10 44737402 44737921 + 0.75 NA Intergenic MIRb|SINE|MIR -173655 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 160.75-14 chr11 38362061 38362347 + 0.75 NA Intergenic L2|LINE|L2 284152 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 173.25-60 chr6 70659886 70660253 + 0.75 NA Intergenic Intergenic -7814 NM_001044305 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 146-58 chr7 106910388 106910619 + 0.75 NA Intergenic L1ME4a|LINE|L1 45024 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 119-57 chr4 81458332 81458490 + 0.75 NA intron (NM_152545, intron 2 of 13) intron (NM_152545, intron 2 of 13) 13496 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 118.25-119 chr9 75650391 75650580 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -240159 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 217.75-19 chr2 29724260 29724569 + 0.75 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 197172 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 126.75-69 chr4 121438977 121439261 + 0.75 NA Intergenic L1M2|LINE|L1 -58101 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 138-15 chr12 32661559 32661860 + 0.75 NA Intergenic Intergenic -17491 NM_001278463 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 133-36 chr19 28379769 28380094 + 0.75 NA Intergenic Intergenic -226757 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 177-5 chr10 95051434 95051707 + 0.75 NA intron (NM_001198855, intron 6 of 9) L1M1|LINE|L1 17927 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 115.25-60 chr21 25576354 25576690 + 0.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 2542 NR_030784 406947 NR_030784 ENSG00000283904 MIR155 MIRN155|miRNA155|mir-155 microRNA 155 ncRNA 151-64 chr7 17512732 17513033 + 0.75 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 46027 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 113.5-62 chr2 123469577 123469854 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -396234 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 146-63 chr8 130221673 130222094 + 0.75 NA intron (NM_001362925, intron 4 of 29) MIRb|SINE|MIR 74650 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 144.25-21 chr15 25956228 25956494 + 0.75 NA intron (NR_040082, intron 1 of 4) MER53|DNA|hAT 54001 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 174.25-31 chr18 60998952 60999238 + 0.75 NA Intergenic Intergenic -334335 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 231.5-9 chr13 100184721 100185339 + 0.75 NA intron (NR_148031, intron 6 of 22) L1ME3B|LINE|L1 95937 NM_001352606 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 168-68 chr9 92505719 92506032 + 0.75 NA intron (NM_001197296, intron 6 of 9) intron (NM_001197296, intron 6 of 9) 22183 NR_039817 100616351 NR_039817 ENSG00000264158 MIR4670 - microRNA 4670 ncRNA 128.5-86 chr6 92297405 92297732 + 0.75 NA Intergenic Intergenic -607140 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 166.75-18 chr14 57435271 57435559 + 0.75 NA Intergenic L1MA3|LINE|L1 44829 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 121.25-41 chr22 34893054 34893350 + 0.75 NA intron (NR_138042, intron 3 of 4) L4_A_Mam|LINE|RTE-X 104714 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 247-2 chr10 64720290 64720741 + 0.75 NA Intergenic L1ME2|LINE|L1 -105013 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 156.5-15 chr12 126664628 126664898 + 0.75 NA intron (NR_110036, intron 1 of 1) intron (NR_110036, intron 1 of 1) 25555 NR_110036 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 119.5-74 chr22 41223711 41223931 + 0.75 NA intron (NM_031488, intron 8 of 16) intron (NM_031488, intron 8 of 16) -6194 NR_148200 100506544 Hs.627409 NR_148200 ENSG00000235513 LOC100506544 - uncharacterized LOC100506544 ncRNA 155.5-72 chr3 114969842 114970185 + 0.75 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -69388 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 173.25-5 chr1 210425977 210426283 + 0.75 NA intron (NM_001122834, intron 7 of 11) L1PA12|LINE|L1 96764 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 141-69 chr6 56866255 56866527 + 0.75 NA intron (NM_001144769, intron 3 of 96) L2a|LINE|L2 -14475 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 190-52 chr8 91273871 91274210 + 0.75 NA intron (NM_134266, intron 2 of 18) MIRb|SINE|MIR 24721 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 179.75-56 chr7 148856359 148856725 + 0.75 NA intron (NM_001203247, intron 1 of 19) L1MC3|LINE|L1 26943 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 134.75-26 chr17 77888367 77888717 + 0.75 NA Intergenic Intergenic -4455 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 159-37 chr2 170701539 170701901 + 0.75 NA intron (NR_110185, intron 5 of 5) MLT1G|LTR|ERVL-MaLR 12847 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 205-46 chr9 108411908 108412248 + 0.75 NA Intergenic Intergenic 443908 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 123.75-30 chr12 50902186 50902387 + 0.75 NA Intergenic L1M3c|LINE|L1 -22729 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 174.25-44 chr4 172965561 172965969 + 0.75 NA intron (NM_001034845, intron 10 of 12) intron (NM_001034845, intron 10 of 12) -203046 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 147-68 chr6 9964501 9964889 + 0.75 NA Intergenic L2a|LINE|L2 -439807 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 169.25-18 chr14 66150327 66150701 + 0.75 NA Intergenic L1PA15|LINE|L1 -335857 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 181.25-45 chr4 94532074 94532403 + 0.75 NA intron (NM_001011516, intron 3 of 9) LTR3B_|LTR|ERVK 80296 NM_001011513 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 159.75-55 chr5 166708390 166708879 + 0.75 NA Intergenic LTR40A1|LTR|ERVL 217736 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 161.25-68 chr5 148621199 148621522 + 0.75 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 15701 NM_001040173 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 159.25-43 chr22 24436584 24437061 + 0.75 NA intron (NM_001278497, intron 3 of 3) L2b|LINE|L2 4703 NM_001278498 135 Hs.197029 NM_000675 ENSG00000128271 ADORA2A A2aR|ADORA2|RDC8 adenosine A2a receptor protein-coding 177.5-21 chr16 68339737 68340067 + 0.75 NA exon (NM_019023, exon 9 of 19) exon (NM_019023, exon 9 of 19) 28788 NM_001290018 54496 Hs.640229 NM_019023 ENSG00000132600 PRMT7 SBIDDS protein arginine methyltransferase 7 protein-coding 201.25-22 chr22 37878323 37878894 + 0.75 NA intron (NM_001242923, intron 9 of 10) AluSp|SINE|Alu -27689 NM_033386 85377 Hs.517610 NM_033386 ENSG00000100139 MICALL1 MICAL-L1|MIRAB13 MICAL like 1 protein-coding 129-9 chr10 78548174 78548399 + 0.75 NA Intergenic L2b|LINE|L2 280944 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 120-6 chr1 78589822 78590171 + 0.75 NA Intergenic Intergenic -30452 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 220.75-22 chr4 173027467 173027920 + 0.75 NA intron (NM_001034845, intron 12 of 12) L1M5|LINE|L1 -141118 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 123.5-14 chr10 92950134 92950383 + 0.75 NA intron (NM_001319195, intron 14 of 21) intron (NM_001319195, intron 14 of 21) 101738 NM_019053 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 157.75-83 chr9 101565883 101566127 + 0.75 NA Intergenic Intergenic 28964 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 188.75-53 chr8 129985538 129985889 + 0.75 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 22740 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 163.75-53 chr4 110802289 110802580 + 0.75 NA Intergenic L2|LINE|L2 58213 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 163.25-11 chr10 87889099 87889354 + 0.75 NA intron (NM_001304717, intron 2 of 9) intron (NM_001304717, intron 2 of 9) 25601 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 141.5-16 chr10 89495045 89495408 + 0.75 NA intron (NM_213606, intron 2 of 7) AluSx|SINE|Alu 39235 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 154.75-39 chr20 50300870 50301134 + 0.75 NA intron (NR_034124, intron 2 of 4) (ATGG)n|Simple_repeat|Simple_repeat 8282 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 116.25-13 chr11 15568894 15569149 + 0.75 NA Intergenic (TAG)n|Simple_repeat|Simple_repeat -74864 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 226.75-31 chr8 118942496 118942908 + 0.75 NA intron (NM_002546, intron 1 of 4) MIRb|SINE|MIR 9183 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 130-36 chr2 96555097 96555426 + 0.75 NA Intergenic Intergenic 17382 NM_001319092 10865 Hs.920 NM_006673 ENSG00000196843 ARID5A MRF-1|MRF1|RP11-363D14 AT-rich interaction domain 5A protein-coding 122.75-23 chr14 31268203 31268517 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -60567 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 121.25-21 chr14 72869831 72870040 + 0.75 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 22714 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 132-37 chr2 105299085 105299358 + 0.75 NA intron (NM_001142621, intron 2 of 11) AluJb|SINE|Alu 30435 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 155-2 chr1 91114353 91114725 + 0.75 NA Intergenic AluSq2|SINE|Alu -92284 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 121-15 chr11 57288415 57288717 + 0.75 NA Intergenic MER47B|DNA|TcMar-Tigger 36386 NM_033396 85456 Hs.530730 NM_033396 ENSG00000149115 TNKS1BP1 TAB182 tankyrase 1 binding protein 1 protein-coding 141.25-31 chr14 46127988 46128331 + 0.75 NA intron (NR_102702, intron 1 of 3) L1MA4|LINE|L1 64000 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 184-54 chr9 132851886 132852198 + 0.75 NA intron (NM_001317958, intron 4 of 12) L1MD2|LINE|L1 -26302 NR_133631 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 196.75-47 chrX 65108484 65108836 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -73919 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 184.75-35 chr2 225927700 225928090 + 0.75 NA Intergenic Intergenic -214899 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 161.75-23 chr19 39116815 39117043 + 0.75 NA Intergenic AluSq|SINE|Alu -8857 NM_005884 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 160.25-34 chr2 134537515 134537863 + 0.75 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 181311 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 171.5-40 chr2 43865417 43865770 + 0.75 NA intron (NM_001357321, intron 6 of 12) intron (NM_001357321, intron 6 of 12) 26622 NM_001357321 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 119.25-99 chr8 126735024 126735196 + 0.75 NA Intergenic Intergenic -176632 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 145.75-22 chr17 58554888 58555304 + 0.75 NA intron (NR_110810, intron 4 of 4) intron (NR_110810, intron 4 of 4) -10768 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 118.75-58 chr2 165822922 165823130 + 0.75 NA Intergenic Intergenic -28779 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 192-33 chr3 84460697 84461072 + 0.75 NA Intergenic L1MC3|LINE|L1 408691 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 162.5-87 chr8 8405725 8406078 + 0.75 NA Intergenic AluSp|SINE|Alu -19462 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 143.25-19 chr12 43017809 43018036 + 0.75 NA Intergenic L2c|LINE|L2 -137393 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 221.75 chr1 237569025 237569334 + 0.75 NA exon (NM_001035, exon 29 of 105) exon (NM_001035, exon 29 of 105) 98060 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 128.5-49 chr20 58785680 58785925 + 0.75 NA Intergenic Intergenic 12377 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 131.75 chr1 10295211 10295456 + 0.75 NA intron (NM_001365953, intron 16 of 20) intron (NM_001365953, intron 16 of 20) -3633 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 125-16 chr10 110979700 110979965 + 0.75 NA intron (NM_001269039, intron 2 of 7) intron (NM_001269039, intron 2 of 7) -9094 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 146-62 chr8 118562479 118562802 + 0.75 NA intron (NM_001101676, intron 2 of 4) L2|LINE|L2 -58361 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 114.25-48 chr18 60697896 60698078 + 0.75 NA Intergenic Intergenic -325212 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 175.75-39 chr5 7086362 7086657 + 0.75 NA Intergenic L2c|LINE|L2 182845 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 148.5-24 chr13 33532066 33532387 + 0.75 NA intron (NM_001243476, intron 3 of 17) L1MC5|LINE|L1 144568 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 235.25-29 chr8 28160577 28161109 + 0.75 NA intron (NM_018091, intron 13 of 14) AluSx|SINE|Alu 67704 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 126-87 chr8 69017111 69017482 + 0.75 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 86894 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 223.75-11 chr2 69744385 69744956 + 0.75 NA intron (NM_001320700, intron 1 of 12) MIRb|SINE|MIR 2536 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 164-2 chr1 108845405 108845834 + 0.75 NA intron (NM_152763, intron 5 of 15) LTR33|LTR|ERVL 11475 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 118.25-2 chr1 82617225 82617535 + 0.75 NA Intergenic L2a|LINE|L2 -285803 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 143.5-55 chr2 164427364 164427742 + 0.75 NA Intergenic Intergenic 140942 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 131.75-81 chr8 105686655 105686876 + 0.75 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 367222 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 204.25-24 chr18 10027673 10028027 + 0.75 NA Intergenic Intergenic 113834 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 131-54 chr5 57268042 57268303 + 0.75 NA Intergenic Intergenic 54098 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 120.25-50 chr3 185469460 185469744 + 0.75 NA intron (NM_004721, intron 10 of 13) intron (NM_004721, intron 10 of 13) 29433 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 177-37 chr22 24751046 24751474 + 0.75 NA intron (NM_001008496, intron 9 of 20) intron (NM_001008496, intron 9 of 20) -13241 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 142.5-41 chr2 75022423 75022656 + 0.75 NA Intergenic Intergenic 63896 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 124.25-33 chr14 74479306 74479696 + 0.75 NA TTS (NR_039858) TTS (NR_039858) 703 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 194.5-79 chr8 136820947 136821421 + 0.75 NA intron (NR_147196, intron 4 of 5) L1P4|LINE|L1 290386 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 117-64 chr4 89286741 89286971 + 0.75 NA intron (NM_198281, intron 1 of 1) FAM|SINE|Alu 20944 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 222.25-21 chr21 33224529 33224917 + 0.75 NA Intergenic L1MCb|LINE|L1 -5172 NM_001289126 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 138.25-82 chr7 88671781 88672030 + 0.75 NA Intergenic Intergenic -87795 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 137.75-71 chr5 92863443 92863787 + 0.75 NA Intergenic L2c|LINE|L2 707728 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 195.75-33 chr3 174697869 174698168 + 0.75 NA Intergenic AluSc|SINE|Alu -161316 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 196.25-39 chr20 51557282 51557728 + 0.75 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) 5334 NM_001258294 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 114.5-85 chr5 91106833 91107024 + 0.75 NA intron (NR_003149, intron 87 of 89) L2|LINE|L2 207474 NR_103549 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 156.75-16 chr11 33324379 33324696 + 0.75 NA intron (NM_001278162, intron 2 of 15) LTR16B1|LTR|ERVL -51571 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 126.5-18 chr10 88753427 88753790 + 0.75 NA TTS (NM_001080518) TTS (NM_001080518) -7798 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 180.5-54 chr22 27842379 27842728 + 0.75 NA Intergenic Intergenic -40797 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 161.5-64 chr4 74647612 74647995 + 0.75 NA Intergenic L1MEd|LINE|L1 146720 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 193.25-53 chrX 70999725 71000239 + 0.75 NA Intergenic Intergenic 68352 NM_013346 29934 Hs.260750 NM_013346 ENSG00000147164 SNX12 - sorting nexin 12 protein-coding 116.5-128 chr9 75334240 75334437 + 0.75 NA Intergenic L1MA5A|LINE|L1 245824 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 147.5-16 chr11 132532181 132532419 + 0.75 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 247998 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 128.75-22 chr12 123478280 123478511 + 0.75 NA intron (NM_001319243, intron 6 of 7) intron (NM_001319243, intron 6 of 7) 18691 NM_180699 11066 Hs.632738 NM_007020 ENSG00000184209 SNRNP35 HM-1|U1SNRNPBP small nuclear ribonucleoprotein U11/U12 subunit 35 protein-coding 186.25-35 chr3 97075683 97075959 + 0.75 NA intron (NM_001080448, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 261227 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 130.5-22 chr11 64075073 64075352 + 0.75 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) -28678 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding 160.25-36 chr20 105454 105742 + 0.75 NA Intergenic L1PA16|LINE|L1 17926 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 138-43 chr2 226754184 226754457 + 0.75 NA intron (NM_005544, intron 1 of 1) intron (NM_005544, intron 1 of 1) 44470 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 125-27 chr15 27047123 27047505 + 0.75 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 76133 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 200-13 chr14 69024661 69025044 + 0.75 NA Intergenic AluSx|SINE|Alu 45170 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 144.5-38 chr14 49772326 49772615 + 0.75 NA intron (NM_014315, intron 2 of 12) intron (NM_014315, intron 2 of 12) 4317 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 123.25-61 chr4 126961841 126962084 + 0.75 NA Intergenic Intergenic -670995 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 131 chr1 9767527 9767756 + 0.75 NA intron (NM_001009566, intron 2 of 18) MIRb|SINE|MIR 56885 NM_001302883 22883 Hs.29665 NM_014944 ENSG00000171603 CLSTN1 ALC-ALPHA|CDHR12|CST-1|CSTN1|PIK3CD|XB31alpha|alcalpha1|alcalpha2 calsyntenin 1 protein-coding 125.5-99 chr4 158602372 158602709 + 0.75 NA intron (NR_045581, intron 4 of 17) A-rich|Low_complexity|Low_complexity 69347 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 174.25-65 chrX 11279819 11280117 + 0.75 NA intron (NM_006125, intron 1 of 10) MER20|DNA|hAT-Charlie -13445 NM_182681 265 Hs.654436 NM_001142 ENSG00000125363 AMELX AI1E|AIH1|ALGN|AMG|AMGL|AMGX amelogenin X-linked protein-coding 123.75-101 chr7 132028319 132028658 + 0.75 NA Intergenic Intergenic 118268 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 157-56 chr6 133281698 133282058 + 0.75 NA intron (NM_172103, intron 2 of 18) L1PA16|LINE|L1 40379 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 136.25-71 chr7 31729753 31730029 + 0.75 NA Intergenic Intergenic 42676 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 293.25-14 chr5 164004680 164005128 + 0.75 NA Intergenic Intergenic 462498 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 187-20 chr19 43418257 43418573 + 0.75 NA 3' UTR (NM_001130011, exon 6 of 6) 3' UTR (NM_001130011, exon 6 of 6) 3525 NM_001130011 83639 Hs.97978 NM_031451 ENSG00000131126 TEX101 CT131|GTPR867|NYD-SP8|PRO1884|SGRG|SPATA44|TES101RP testis expressed 101 protein-coding 189-10 chr10 76891069 76891418 + 0.75 NA intron (NM_001271519, intron 27 of 28) intron (NM_001271519, intron 27 of 28) 3199 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 154.5-11 chr10 39386161 39386548 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 689758 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 138-67 chr6 115072776 115072964 + 0.75 NA Intergenic L1MB8|LINE|L1 570965 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 141-79 chr8 119915615 119915924 + 0.75 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 42047 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 174.5-82 chr8 134649300 134649581 + 0.75 NA intron (NM_020863, intron 2 of 15) L1MB5|LINE|L1 47115 NM_001029939 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 114.5-49 chr2 58998951 58999126 + 0.75 NA intron (NR_033873, intron 6 of 13) THE1C|LTR|ERVL-MaLR -218670 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 158.5-76 chr3 184690695 184691079 + 0.75 NA Intergenic MIRc|SINE|MIR 21177 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 132.5-26 chr14 62966563 62966794 + 0.75 NA intron (NM_139318, intron 6 of 10) MER110A|LTR|ERV1 78780 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 142-23 chr16 83080988 83081247 + 0.75 NA intron (NM_001220489, intron 3 of 12) AluSp|SINE|Alu -90819 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 172.25-11 chr11 81753153 81753463 + 0.75 NA Intergenic Intergenic 137528 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 200-11 chr12 43191049 43191402 + 0.75 NA Intergenic Intergenic 35910 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 367.25-4 chr14 62076345 62077123 + 0.75 NA intron (NM_001367661, intron 6 of 8) intron (NM_001367661, intron 6 of 8) -40623 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 118-24 chr13 62872433 62872745 + 0.75 NA Intergenic Intergenic -65230 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 118.25-47 chr2 99876138 99876393 + 0.75 NA intron (NM_001025108, intron 6 of 23) L2b|LINE|L2 229318 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 188.25-38 chr3 110989340 110989749 + 0.75 NA Intergenic L1MA3|LINE|L1 80415 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 130.25-40 chr18 21339522 21339939 + 0.75 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 97488 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 125.5-24 chr11 16060321 16060543 + 0.75 NA intron (NM_017508, intron 8 of 14) intron (NM_017508, intron 8 of 14) -90811 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 155.75-30 chr21 28855777 28856030 + 0.75 NA Intergenic L1PA13|LINE|L1 29464 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 115.25-79 chr5 119983643 119983880 + 0.75 NA Intergenic Intergenic 354202 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 141.5-20 chr11 110389847 110390144 + 0.75 NA intron (NR_135100, intron 3 of 3) L1MC3|LINE|L1 34881 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 146.75-2 chr1 81131232 81131577 + 0.75 NA Intergenic Intergenic -174788 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 177.75-10 chr12 109230533 109230834 + 0.75 NA intron (NM_001093, intron 28 of 52) AluJr|SINE|Alu 78601 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 164.25-37 chr2 186180270 186180628 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -94132 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 178-17 chr14 29582983 29583279 + 0.75 NA intron (NM_001330069, intron 17 of 18) intron (NM_001330069, intron 17 of 18) 343965 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 189.75-34 chr4 49046733 49047042 + 0.75 NA intron (NM_001286791, intron 14 of 15) intron (NM_001286791, intron 14 of 15) 60245 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 123-21 chr14 61881269 61881472 + 0.75 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 -46325 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 127-48 chr2 79801606 79801827 + 0.75 NA intron (NM_001282598, intron 3 of 17) AluSp|SINE|Alu 64867 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 153-53 chr9 94461713 94462077 + 0.75 NA TTS (NM_032558) TTS (NM_032558) 87326 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 169.5-39 chr2 21502442 21502820 + 0.75 NA Intergenic L2c|LINE|L2 208021 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 128.75-84 chr7 75723413 75723718 + 0.75 NA intron (NM_005338, intron 1 of 30) MLT1E2|LTR|ERVL-MaLR 15376 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 341-3 chr14 73425215 73425797 + 0.75 NA intron (NM_001005743, intron 1 of 12) AluJr|SINE|Alu 33074 NM_001320114 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 158-9 chr11 34603527 34603831 + 0.75 NA Intergenic Intergenic -17414 NM_012153 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 182.75-44 chr5 78949480 78949810 + 0.75 NA intron (NM_198709, intron 5 of 7) AluSx|SINE|Alu 35665 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 183-61 chr7 2132303 2132808 + 0.75 NA intron (NM_001013837, intron 11 of 18) L1MC2|LINE|L1 -43503 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 133-51 chr4 35476231 35476502 + 0.75 NA Intergenic AluSx|SINE|Alu 767573 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 153-32 chr3 143601151 143601471 + 0.75 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 247157 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 134-24 chr14 35077278 35077659 + 0.75 NA intron (NM_001079519, intron 5 of 6) intron (NM_001079519, intron 5 of 6) -3613 NR_110415 101927178 Hs.617139 NR_110415 ENSG00000151327 LOC101927178 - uncharacterized LOC101927178 ncRNA 114-95 chr9 109849908 109850252 + 0.75 NA intron (NM_053016, intron 1 of 6) intron (NM_053016, intron 1 of 6) 69882 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 124-11 chr10 133004049 133004291 + 0.75 NA Intergenic Intergenic 38636 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 171-36 chr3 83811957 83812202 + 0.75 NA Intergenic MER1A|DNA|hAT-Charlie 1057496 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 175-2 chr1 179889562 179889949 + 0.75 NA intron (NM_001267578, intron 3 of 9) AluJb|SINE|Alu 7713 NM_015602 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 127.25-21 chr12 60013926 60014225 + 0.75 NA Intergenic Intergenic 324705 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 164.25-62 chr8 143243627 143243906 + 0.75 NA Intergenic Intergenic -3173 NM_173832 286128 Hs.668016 NM_173832 ENSG00000181638 ZFP41 ZNF753|zfp-41 ZFP41 zinc finger protein protein-coding 134-71 chr7 67648815 67649048 + 0.75 NA Intergenic Intergenic 312955 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 188.25-24 chr2 47476717 47477077 + 0.75 NA intron (NM_000251, intron 13 of 15) intron (NM_000251, intron 13 of 15) -50640 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 144.75-64 chr4 64975791 64976161 + 0.75 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 28524 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 150.5-40 chr2 19372858 19373120 + 0.75 NA Intergenic (CCTTCT)n|Simple_repeat|Simple_repeat -14366 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 122.75-44 chr2 51849838 51850150 + 0.75 NA intron (NR_135237, intron 6 of 10) L1MB7|LINE|L1 -520654 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 152.25-9 chr10 56069569 56069863 + 0.75 NA Intergenic Intergenic 291543 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 171.25-42 chr5 10122997 10123418 + 0.75 NA Intergenic Intergenic 126681 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 163.5-42 chr2 134169554 134169837 + 0.75 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 42570 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 222.75-6 chr10 102913588 102914035 + 0.75 NA intron (NR_160733, intron 1 of 2) intron (NR_160733, intron 1 of 2) -4483 NM_199076 54805 Hs.643509 NM_017649 ENSG00000148842 CNNM2 ACDP2|HOMG6|HOMGSMR cyclin and CBS domain divalent metal cation transport mediator 2 protein-coding 169-53 chr8 89667949 89668224 + 0.75 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat 89625 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 133.75-14 chr10 125935823 125936119 + 0.75 NA intron (NM_001363549, intron 1 of 10) intron (NM_001363549, intron 1 of 10) 37302 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 147.75-23 chr14 63972049 63972373 + 0.75 NA intron (NM_015180, intron 11 of 114) intron (NM_015180, intron 11 of 114) 119207 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 167.75-16 chr12 84176491 84176869 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 736119 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 223.75-19 chr5 14161671 14162057 + 0.75 NA intron (NM_007118, intron 1 of 56) AluJr|SINE|Alu 18522 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 173.75-51 chr8 61193850 61194256 + 0.75 NA Intergenic L1MEd|LINE|L1 -93917 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 140.75-10 chr11 84776362 84776621 + 0.75 NA intron (NM_001351274, intron 5 of 26) L1PB4|LINE|L1 -55549 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 182.75-23 chr21 14262612 14262996 + 0.75 NA Intergenic L1ME4c|LINE|L1 -10995 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 116-64 chr7 1269844 1270123 + 0.75 NA Intergenic Intergenic 37111 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 170.5-63 chr5 59354888 59355269 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 1892 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 137.5-83 chr4 84179602 84179961 + 0.75 NA intron (NR_125909, intron 5 of 8) L1MC3|LINE|L1 119388 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 205.25-14 chr18 7601451 7601895 + 0.75 NA intron (NM_002845, intron 1 of 30) MLT1D|LTR|ERVL-MaLR 34357 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 189.25-43 chr8 16832221 16832514 + 0.75 NA Intergenic Intergenic 169978 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 123.75-29 chr12 47996318 47996627 + 0.75 NA intron (NM_033150, intron 7 of 52) intron (NM_033150, intron 7 of 52) 8004 NM_033150 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 138-24 chr15 97833401 97833598 + 0.75 NA intron (NR_024172, intron 1 of 2) LTR16B2|LTR|ERVL 40930 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 116.5-120 chr8 90905816 90906100 + 0.75 NA intron (NM_022351, intron 5 of 12) L1MEd|LINE|L1 79119 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 117-50 chr21 29287040 29287273 + 0.75 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -11766 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 131.75-26 chr13 51292710 51293136 + 0.75 NA Intergenic Intergenic -48109 NM_001101320 647174 Hs.685891 NM_001101320 ENSG00000253309 SERPINE3 - serpin family E member 3 protein-coding 159.5-9 chr1 210493148 210493404 + 0.75 NA intron (NM_001122834, intron 8 of 11) MLT2D|LTR|ERVL 163910 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 169-40 chr3 143362597 143363127 + 0.75 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) 20616 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 185.75-21 chr14 50901734 50902057 + 0.75 NA exon (NM_181533, exon 9 of 12) exon (NM_181533, exon 9 of 12) 29735 NM_181814 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 131.25-85 chr7 113284792 113284988 + 0.75 NA Intergenic AluJo|SINE|Alu -166308 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 186.75-15 chr14 46706511 46706879 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -54914 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 127.75-82 chr6 72262223 72262449 + 0.75 NA intron (NM_001350432, intron 14 of 19) intron (NM_001350432, intron 14 of 19) 45395 NM_001350471 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 118-11 chr10 101151460 101151742 + 0.75 NA Intergenic ERVL-int|LTR|ERVL -10335 NR_130724 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 191.75-34 chr5 117038930 117039327 + 0.75 NA Intergenic Intergenic -276919 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 118.75-31 chr14 63439335 63439524 + 0.75 NA intron (NR_104104, intron 2 of 12) AluSp|SINE|Alu 68809 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 121.75-37 chr2 60095243 60095521 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR 287654 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 148.75-12 chr11 111653851 111654064 + 0.75 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 51508 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 175.75-30 chr3 75153786 75154087 + 0.75 NA Intergenic Intergenic -60540 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 124.5-68 chr3 53697675 53697927 + 0.75 NA intron (NM_000720, intron 8 of 48) L1MC4a|LINE|L1 148618 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 128-63 chr8 62980961 62981259 + 0.75 NA non-coding (NR_027378, exon 1 of 1) non-coding (NR_027378, exon 1 of 1) 3249 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 114.25-104 chr8 64101251 64101512 + 0.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 267177 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 138.75-35 chr19 56491740 56492127 + 0.75 NA intron (NR_036521, intron 1 of 1) L1MEf|LINE|L1 13809 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 150-72 chr8 71831667 71832082 + 0.75 NA Intergenic L3|LINE|CR1 -11249 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 173-2 chr1 158528112 158528373 + 0.75 NA Intergenic L1PA15-16|LINE|L1 19863 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 171.25-35 chr3 122270527 122270980 + 0.75 NA intron (NM_001178065, intron 4 of 6) L1M5|LINE|L1 -54495 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 156-68 chr8 123021973 123022377 + 0.75 NA intron (NM_024295, intron 5 of 7) intron (NM_024295, intron 5 of 7) 3597 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 202-18 chr4 23883657 23883978 + 0.75 NA 3' UTR (NM_001354828, exon 2 of 2) 3' UTR (NM_001354828, exon 2 of 2) -2525 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 128.5-5 chr1 191745177 191745393 + 0.75 NA Intergenic Intergenic -413177 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 114-91 chr8 122811308 122811531 + 0.75 NA intron (NM_001362797, intron 1 of 4) LTR79|LTR|ERVL 29764 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 128-28 chr2 126114885 126115090 + 0.75 NA intron (NR_146970, intron 1 of 3) intron (NR_146970, intron 1 of 3) 2998 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 236.25-6 chr12 30317701 30318029 + 0.75 NA Intergenic L2b|LINE|L2 359379 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 160.25-45 chr4 58720411 58720886 + 0.75 NA Intergenic Intergenic -184320 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 132-53 chr4 31988914 31989130 + 0.75 NA Intergenic Intergenic -8357 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 145-9 chr11 81378503 81378743 + 0.75 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 512213 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 244.75-8 chr11 42320510 42320982 + 0.75 NA Intergenic Intergenic -67056 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 141.25-77 chr9 95337019 95337245 + 0.75 NA Intergenic MER52A|LTR|ERV1 -19423 NM_001243744 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 132-36 chr2 102745970 102746230 + 0.75 NA intron (NM_001321346, intron 1 of 3) L1MB8|LINE|L1 9165 NM_001321345 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 112.75-78 chr6 151930879 151931183 + 0.75 NA intron (NM_001122741, intron 4 of 8) L1PREC2|LINE|L1 121924 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 193-20 chr14 55054567 55054894 + 0.75 NA intron (NM_144578, intron 1 of 3) intron (NM_144578, intron 1 of 3) 3083 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 204.25-7 chr10 80693416 80693781 + 0.75 NA Intergenic Intergenic 43801 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 153.5-2 chr1 24374412 24374664 + 0.75 NA intron (NM_001199013, intron 5 of 8) AluY|SINE|Alu -38949 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 155-3 chr1 105073480 105073770 + 0.75 NA Intergenic Intergenic 545310 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 118.25-110 chr8 103647654 103647842 + 0.75 NA intron (NM_001348497, intron 1 of 22) L1PA10|LINE|L1 -145838 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 179-23 chr15 40028541 40028779 + 0.75 NA intron (NM_001013703, intron 33 of 38) intron (NM_001013703, intron 33 of 38) 10521 NM_003134 6727 Hs.533732 NM_003134 ENSG00000140319 SRP14 ALURBP signal recognition particle 14 protein-coding 122.75-53 chr22 36004482 36004682 + 0.75 NA intron (NM_001082578, intron 1 of 13) AluSq2|SINE|Alu 23955 NM_001349999 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 145.25-40 chr2 73309633 73309906 + 0.75 NA Intergenic Intergenic -16221 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 173.75 chr1 8281260 8281590 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -36660 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 118.75-40 chr17 66307599 66307795 + 0.75 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 5084 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 215.5-50 chr8 108392946 108393415 + 0.75 NA Intergenic Intergenic -50403 NM_001329495 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 145.25-13 chr10 68770037 68770442 + 0.75 NA intron (NR_104262, intron 16 of 23) intron (NR_104262, intron 16 of 23) 15067 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 128-18 chr16 11755539 11755753 + 0.75 NA intron (NM_014153, intron 21 of 22) MIRc|SINE|MIR -12789 NM_001324022 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 211.75-20 chr2 55293400 55293949 + 0.75 NA intron (NM_001254943, intron 32 of 33) intron (NM_001254943, intron 32 of 33) 11355 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 115.75-12 chr11 37486154 37486332 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -452358 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 141-76 chr7 70864661 70864987 + 0.75 NA Intergenic L1MB7|LINE|L1 -267320 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 163.25-35 chr18 26286517 26286921 + 0.75 NA intron (NM_005640, intron 7 of 14) AluSz6|SINE|Alu 60274 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 133.25-41 chr2 79921959 79922261 + 0.75 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -55527 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 136.75-52 chr2 230234548 230234861 + 0.75 NA intron (NM_001278453, intron 1 of 23) HAL1ME|LINE|L1 8968 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 202.75-31 chr8 104513924 104514388 + 0.75 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -29691 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 146.25-44 chr2 228435049 228435289 + 0.75 NA Intergenic Intergenic 176226 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 153.75-53 chr3 99586650 99586910 + 0.75 NA Intergenic Intergenic -51814 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 136.25-56 chr3 129664482 129664866 + 0.75 NA intron (NM_015008, intron 2 of 3) intron (NM_015008, intron 2 of 3) 24058 NM_015008 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 156-59 chr6 143262360 143262738 + 0.75 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 97767 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 141.5-73 chr3 36171648 36171979 + 0.75 NA Intergenic MER4B|LTR|ERV1 -208674 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 123.75-102 chr8 20070303 20070618 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 112676 NM_003053 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 124-32 chr2 209554311 209554476 + 0.75 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -24943 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 145.75-19 chr16 49917526 49917946 + 0.75 NA Intergenic AluSz|SINE|Alu -59817 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 139-20 chr14 71200513 71200729 + 0.75 NA Intergenic Intergenic -119855 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 127.25-61 chr3 30638428 30638672 + 0.75 NA intron (NM_001024847, intron 2 of 7) intron (NM_001024847, intron 2 of 7) 31949 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 149-34 chr22 28490032 28490417 + 0.75 NA intron (NM_001145418, intron 2 of 22) MLT2A1|LTR|ERVL 30355 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 138.75-66 chr6 93072585 93072826 + 0.75 NA Intergenic HAL1ME|LINE|L1 346854 NM_004440 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 113.25-44 chr15 57603647 57603813 + 0.75 NA intron (NM_001018100, intron 1 of 12) L1MB3|LINE|L1 11826 NR_104368 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 186-25 chr19 58324273 58324759 + 0.75 NA intron (NR_144444, intron 2 of 2) MER30|DNA|hAT-Charlie -2478 NM_001321117 342945 Hs.388162 NM_181846 ENSG00000182318 ZSCAN22 HKR2|ZNF50 zinc finger and SCAN domain containing 22 protein-coding 119-42 chr2 187163280 187163631 + 0.75 NA Intergenic AluY|SINE|Alu 284797 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 177.75 chr1 212949438 212949818 + 0.75 NA promoter-TSS (NM_024749) promoter-TSS (NM_024749) -913 NM_024749 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 119.5-50 chr17 29872749 29873018 + 0.75 NA intron (NM_001282129, intron 1 of 15) AluSz|SINE|Alu -57020 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 132.75-106 chr9 103336725 103337011 + 0.75 NA Intergenic Intergenic -11835 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 122.5-22 chr12 123218194 123218573 + 0.75 NA exon (NM_022782, exon 6 of 24) exon (NM_022782, exon 6 of 24) 14758 NR_103517 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 132.25-88 chr8 88312026 88312380 + 0.75 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 15280 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 246-34 chr8 57582865 57583445 + 0.75 NA Intergenic Intergenic -162994 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 136.25-57 chr3 150968582 150968805 + 0.75 NA intron (NR_046380, intron 1 of 4) intron (NR_046380, intron 1 of 4) -3985 NR_024066 116933 Hs.570680 NR_024066 CLRN1-AS1 CLRN1OS|UCRP CLRN1 antisense RNA 1 ncRNA 131.5-24 chr12 116863909 116864244 + 0.75 NA intron (NM_003806, intron 1 of 1) Charlie20a|DNA|hAT-Charlie 17365 NM_003806 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 142-4 chr1 172088409 172088846 + 0.75 NA intron (NM_001278252, intron 12 of 14) intron (NM_001278252, intron 12 of 14) -50181 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 118-4 chr1 155995799 155996000 + 0.75 NA Intergenic Intergenic -16339 NM_001350112 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 117.75-79 chr8 53847905 53848249 + 0.75 NA Intergenic L1MB7|LINE|L1 -3718 NM_001286673 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 120.25-25 chr14 29838850 29839114 + 0.75 NA intron (NM_001330069, intron 1 of 18) HSMAR2|DNA|TcMar-Mariner 88114 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 128.75-20 chr12 33645612 33645866 + 0.75 NA Intergenic Intergenic -205920 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 117.25-76 chr5 38982031 38982216 + 0.75 NA intron (NM_001285439, intron 7 of 38) intron (NM_001285439, intron 7 of 38) 92276 NM_152756 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 127.25-101 chr9 103796123 103796310 + 0.75 NA Intergenic L2a|LINE|L2 -203493 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 182.5-15 chr12 131124139 131124573 + 0.75 NA intron (NM_198827, intron 20 of 24) intron (NM_198827, intron 20 of 24) -40655 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 145-54 chr5 94626928 94627172 + 0.75 NA intron (NM_032290, intron 1 of 20) intron (NM_032290, intron 1 of 20) 8381 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 215.5-51 chr8 120020912 120021433 + 0.75 NA intron (NM_022783, intron 8 of 8) AluSq2|SINE|Alu -103930 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 182.5-39 chr22 29257195 29257603 + 0.75 NA intron (NM_001267895, intron 14 of 14) MIRb|SINE|MIR 10582 NM_012265 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 114.75-55 chr20 34927857 34928030 + 0.75 NA TTS (NM_001322495) TTS (NM_001322495) 27692 NM_001322495 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 129-61 chr6 12895425 12895718 + 0.75 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -61785 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 157-31 chr2 197826913 197827226 + 0.75 NA intron (NM_006226, intron 1 of 5) L2|LINE|L2 22476 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 185.5-56 chr4 117799300 117799836 + 0.75 NA Intergenic L1MEc|LINE|L1 -34833 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 173.75-2 chr1 99323376 99323842 + 0.75 NA Intergenic AluJr|SINE|Alu 59317 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 130-8 chr11 903189 903384 + 0.75 NA intron (NM_023947, intron 2 of 12) intron (NM_023947, intron 2 of 12) 7524 NM_023947 66005 Hs.144468 NM_023947 ENSG00000177830 CHID1 GL008|SI-CLP|SICLP chitinase domain containing 1 protein-coding 185.75-55 chr7 88605449 88605811 + 0.75 NA Intergenic Intergenic -154070 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 139.25-16 chr11 70455490 70455701 + 0.75 NA Intergenic MER34D|LTR|ERV1 57066 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 198.25-27 chr3 14296237 14296742 + 0.75 NA Intergenic Arthur1B|DNA|hAT-Tip100 56079 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 150-11 chr1 208916599 208917034 + 0.75 NA Intergenic MIRb|SINE|MIR -55638 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 196.25-67 chr9 21588701 21589185 + 0.75 NA Intergenic L2a|LINE|L2 -29145 NR_027054 554202 Hs.458096 NR_027054 MIR31HG LncHIFCAR|hsa-lnc-31 MIR31 host gene ncRNA 160.75-57 chr6 77041720 77042145 + 0.75 NA Intergenic Intergenic 422090 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 138.25-71 chr5 29981190 29981463 + 0.75 NA Intergenic AluJo|SINE|Alu 100766 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 182-8 chr10 122780460 122781007 + 0.75 NA intron (NR_003570, intron 16 of 27) intron (NR_003570, intron 16 of 27) 24039 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 141.5-80 chr3 184917381 184917723 + 0.75 NA intron (NM_001009921, intron 27 of 46) AluSq2|SINE|Alu 105045 NM_001349295 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 182.75-42 chr5 19326461 19326779 + 0.75 NA Intergenic Intergenic 559652 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 143.75-67 chr4 180939319 180939539 + 0.75 NA Intergenic Intergenic 219720 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 164.5-88 chr7 30247477 30247808 + 0.75 NA non-coding (NR_136267, exon 4 of 4) non-coding (NR_136267, exon 4 of 4) -36955 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 123.5-11 chr10 72425280 72425567 + 0.75 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -70504 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 131.75-14 chr11 81892265 81892559 + 0.75 NA intron (NR_120571, intron 6 of 7) L1M2|LINE|L1 -1576 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 143.25-61 chr5 68683713 68683984 + 0.75 NA Intergenic Intergenic 346079 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 128.75-79 chr6 52152740 52153027 + 0.75 NA Intergenic Intergenic -1860 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 146-46 chr5 50889722 50889973 + 0.75 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 80340 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 147-57 chr3 190124595 190124932 + 0.75 NA intron (NR_126419, intron 1 of 3) MER20|DNA|hAT-Charlie -2326 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 214.5-64 chr9 106956957 106957379 + 0.75 NA intron (NM_001347997, intron 7 of 12) Tigger1|DNA|TcMar-Tigger 94002 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 217.5-40 chr6 154702800 154703196 + 0.75 NA Intergenic AluSx1|SINE|Alu -30380 NM_001286194 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 134.25-64 chr4 173824026 173824314 + 0.75 NA Intergenic Intergenic -73103 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 114.25-74 chr4 11611666 11611889 + 0.75 NA Intergenic AluY|SINE|Alu 157691 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 119.75-92 chrX 70061939 70062163 + 0.75 NA promoter-TSS (NM_207320) promoter-TSS (NM_207320) -406 NM_207320 139562 Hs.447381 NM_207320 ENSG00000189401 OTUD6A DUBA2|HSHIN6 OTU deubiquitinase 6A protein-coding 146.25-59 chr5 108011197 108011483 + 0.75 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -340403 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 166.75-61 chr9 25141466 25141801 + 0.75 NA Intergenic L1MA9|LINE|L1 537225 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 146.25-52 chr3 65073419 65073656 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -385537 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 150-70 chr7 159190073 159190331 + 0.75 NA Intergenic LTR16A|LTR|ERVL -45245 NM_001304522 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 248.5-17 chr2 148846413 148846835 + 0.75 NA Intergenic L1PA16|LINE|L1 -28603 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 163.25-16 chr12 10321561 10321989 + 0.75 NA non-coding (NR_147040, exon 5 of 5) non-coding (NR_147040, exon 5 of 5) 13905 NM_002262 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 115.5-50 chr2 178737153 178737367 + 0.75 NA intron (NM_001256850, intron 47 of 312) intron (NM_001256850, intron 47 of 312) -39666 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 118.25-31 chr14 88222291 88222554 + 0.75 NA intron (NM_138317, intron 4 of 6) L1MC1|LINE|L1 48489 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 140-49 chr5 4457360 4457614 + 0.75 NA Intergenic L1ME1|LINE|L1 -315994 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 182.75-63 chr9 103289154 103289432 + 0.75 NA intron (NR_121578, intron 3 of 9) intron (NR_121578, intron 3 of 9) 35740 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 118.25-3 chr1 96711503 96711760 + 0.75 NA Intergenic L2a|LINE|L2 -9974 NM_001300988 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 142.5-59 chr4 33257411 33257626 + 0.75 NA Intergenic Intergenic 782375 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 121.5-115 chrX 42644234 42644416 + 0.75 NA Intergenic Intergenic 133838 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 123.5-43 chr17 71265182 71265430 + 0.75 NA Intergenic Intergenic -63127 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 114.75-12 chr10 48689546 48689749 + 0.75 NA intron (NM_020945, intron 1 of 61) MER33|DNA|hAT-Charlie 4184 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 178-4 chr1 160814455 160814795 + 0.75 NA exon (NM_001261456, exon 4 of 10) exon (NM_001261456, exon 4 of 10) 18451 NM_001261456 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 163.5-21 chr12 2246061 2246317 + 0.75 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -22708 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 212.5-35 chr3 106321482 106321860 + 0.75 NA Intergenic L1PB1|LINE|L1 -452270 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 184.75-34 chr2 164230208 164230518 + 0.75 NA Intergenic AluJb|SINE|Alu 338132 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 157-37 chr3 18301442 18301792 + 0.75 NA Intergenic L1MA4A|LINE|L1 123722 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 199.5-14 chr13 87660688 87661050 + 0.75 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 10094 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene ncRNA 114.25-92 chr6 135837521 135837799 + 0.75 NA Intergenic Intergenic -14041 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 129.75-22 chr14 20429155 20429380 + 0.75 NA exon (NM_001365790, exon 5 of 5) exon (NM_001365790, exon 5 of 5) 6563 NM_001109997 123103 Hs.556014 NM_001109997 ENSG00000185271 KLHL33 - kelch like family member 33 protein-coding 120.5-52 chr20 13086567 13086813 + 0.75 NA intron (NM_001349945, intron 5 of 12) intron (NM_001349945, intron 5 of 12) 77718 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 141.25-7 chr10 30246969 30247239 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 35252 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 153.5-31 chr15 62805554 62805947 + 0.75 NA exon (NM_015059, exon 48 of 56) exon (NM_015059, exon 48 of 56) -18207 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 150.25-8 chr10 25744064 25744395 + 0.75 NA Intergenic AluJo|SINE|Alu 92517 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 183.75-33 chr2 189827154 189827560 + 0.75 NA intron (NR_110332, intron 6 of 12) intron (NR_110332, intron 6 of 12) 42907 NM_001321049 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 131-74 chr7 119237710 119237982 + 0.75 NA Intergenic Intergenic 669529 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 118.5-119 chr8 132661649 132661948 + 0.75 NA intron (NR_135907, intron 1 of 10) intron (NR_135907, intron 1 of 10) 13747 NR_135905 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 122.75-18 chr12 37915055 37915255 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -401619 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 160.25-48 chr6 15212468 15212785 + 0.75 NA Intergenic Intergenic -33443 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 138-83 chr9 28531161 28531514 + 0.75 NA intron (NM_152570, intron 2 of 6) Tigger20a|DNA|TcMar-Tigger 187968 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 216.25-39 chr8 64047243 64047630 + 0.75 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 278006 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 133.25-38 chr2 28624637 28624847 + 0.75 NA intron (NR_138141, intron 27 of 35) intron (NR_138141, intron 27 of 35) 58385 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 234.5-38 chr7 42335566 42335937 + 0.75 NA Intergenic Intergenic -98542 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 127.75-100 chr8 142550125 142550394 + 0.75 NA Intergenic Intergenic 64220 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 131.75-7 chr10 11619279 11619575 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -7638 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 119.25-84 chr6 138237770 138238107 + 0.75 NA intron (NM_020340, intron 5 of 33) LTR87|LTR|ERVL? -19448 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 214.75-25 chr4 32758251 32758806 + 0.75 NA Intergenic L1PB3|LINE|L1 407490 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 184-11 chr10 112693611 112694013 + 0.75 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 59642 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 120.25-4 chr1 187249611 187249881 + 0.75 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 156904 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 149.5-7 chr1 84439111 84439444 + 0.75 NA Intergenic Intergenic 30926 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 155.5-28 chr12 27152676 27152951 + 0.75 NA Intergenic L3|LINE|CR1 -70291 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 149-26 chr2 213606400 213606664 + 0.75 NA intron (NR_047660, intron 9 of 14) L1M5|LINE|L1 -151535 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 248.25-20 chr20 8116889 8117518 + 0.75 NA Intergenic MIRb|SINE|MIR -15063 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 169-56 chr9 74602168 74602493 + 0.75 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -13204 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 186.25-53 chr8 106184843 106185154 + 0.75 NA Intergenic Intergenic -85180 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 114.25-14 chr10 106965401 106965643 + 0.75 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 199184 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 114.5-98 chr7 35266043 35266291 + 0.75 NA Intergenic Intergenic -12067 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 156-23 chr12 43677170 43677573 + 0.75 NA Intergenic L1PA15-16|LINE|L1 81419 NM_001098614 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 174.5-63 chr4 55336660 55337186 + 0.75 NA Intergenic LTR9D|LTR|ERV1 -9319 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 153.75-21 chr13 21285030 21285388 + 0.75 NA 3' UTR (NM_001365454, exon 5 of 5) 3' UTR (NM_001365454, exon 5 of 5) 12882 NM_001365454 101928764 NM_001365454 LOC101928764 - coiled-coil domain-containing protein 144B protein-coding 176.25-24 chr15 97940000 97940467 + 0.75 NA Intergenic AluJb|SINE|Alu -20470 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 132-26 chr16 55369239 55369574 + 0.75 NA Intergenic MamRep1894|DNA|hAT 44847 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 161.25-20 chr14 50149254 50149650 + 0.75 NA intron (NM_006939, intron 14 of 22) L1MA5|LINE|L1 -32880 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 140.25-49 chr3 5656111 5656451 + 0.75 NA Intergenic Intergenic -406026 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 124-62 chr6 51352492 51352832 + 0.75 NA Intergenic L2a|LINE|L2 -269208 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 140.25-43 chr20 10978592 10978858 + 0.75 NA Intergenic Intergenic -47819 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 132-10 chr10 26758538 26758885 + 0.75 NA intron (NM_001178122, intron 7 of 9) intron (NM_001178122, intron 7 of 9) 61010 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 206.5-57 chrX 51205615 51206044 + 0.75 NA Intergenic Intergenic -34408 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 219.25-28 chr5 65526443 65526842 + 0.75 NA intron (NM_001349369, intron 9 of 10) L2c|LINE|L2 36526 NM_001349368 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 217.75-25 chr20 58322196 58322688 + 0.75 NA intron (NM_020673, intron 2 of 6) Charlie5|DNA|hAT-Charlie 12727 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 173.75-29 chr3 105615283 105615571 + 0.75 NA Intergenic Intergenic 248518 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 196.25-7 chr10 131494406 131494854 + 0.75 NA Intergenic Intergenic -182909 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 191.25-41 chr3 32374119 32374548 + 0.75 NA Intergenic Intergenic -17520 NM_138410 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 169.25-35 chr3 32668430 32668723 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -16612 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 235.25-3 chr1 150525011 150525601 + 0.75 NA Intergenic AluSg|SINE|Alu 9549 NR_051960 100874054 Hs.576460 NR_051960 ENSG00000228126 FALEC FAL1|LINC00568|ncRNA-a1 focally amplified long non-coding RNA in epithelial cancer ncRNA 144.5-27 chr12 24960158 24960372 + 0.75 NA Intergenic L1M1|LINE|L1 -11164 NM_001178091 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 116.25-21 chr14 64594945 64595263 + 0.75 NA Intergenic Intergenic 45143 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 135-49 chr3 88644452 88644738 + 0.75 NA Intergenic Intergenic 306139 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 117.25-87 chr7 115987008 115987392 + 0.75 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) -18887 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 116-60 chr6 36400161 36400469 + 0.75 NA intron (NM_152990, intron 4 of 4) intron (NM_152990, intron 4 of 4) -12515 NM_001207037 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 195.5-4 chr1 100630563 100630961 + 0.75 NA intron (NR_038914, intron 3 of 4) intron (NR_038914, intron 3 of 4) 16242 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 116.75-28 chr15 26248370 26248705 + 0.75 NA Intergenic L1MB3|LINE|L1 132724 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 155.5-61 chr2 185651824 185652211 + 0.75 NA Intergenic L1MEg|LINE|L1 86702 NR_110216 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 128.25-42 chr22 41856585 41856885 + 0.75 NA intron (NR_103834, intron 1 of 21) intron (NR_103834, intron 1 of 21) -22070 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 121.5-88 chr4 62038703 62038923 + 0.75 NA intron (NM_001371343, intron 22 of 23) AluSz6|SINE|Alu 122952 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 136.5-21 chr11 93935692 93936036 + 0.75 NA Intergenic L2c|LINE|L2 -85246 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 123.75-87 chr5 97617603 97617803 + 0.75 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 113007 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 139.5-21 chr12 62320514 62320839 + 0.75 NA intron (NR_147080, intron 4 of 19) intron (NR_147080, intron 4 of 19) 60272 NM_001351163 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 165-52 chr8 117263473 117263776 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 128629 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 154-18 chr14 43520046 43520357 + 0.75 NA Intergenic L1PB1|LINE|L1 987082 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 134-66 chr6 64363522 64363863 + 0.75 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 556856 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 200-35 chr4 144522096 144522648 + 0.75 NA Intergenic Intergenic 123647 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 138-50 chr3 80358923 80359240 + 0.75 NA Intergenic Intergenic -405816 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 222.75 chr1 36678181 36678597 + 0.75 NA Intergenic MLT1O|LTR|ERVL-MaLR -195075 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 141.75-53 chr3 43914993 43915365 + 0.75 NA Intergenic Intergenic -199033 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 241-37 chrX 70636229 70636644 + 0.75 NA intron (NM_001003811, intron 18 of 30) L1M3e|LINE|L1 -180442 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 192.25-36 chr8 58985317 58985655 + 0.75 NA intron (NM_014729, intron 1 of 8) L1MB2|LINE|L1 133661 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 126.5-65 chr20 39947707 39947930 + 0.75 NA Intergenic Intergenic -56643 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 123.5-97 chr6 164390593 164390896 + 0.75 NA Intergenic Intergenic 431319 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 124.5-110 chr9 68716894 68717130 + 0.75 NA intron (NM_001278253, intron 1 of 13) L1PA17|LINE|L1 11598 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 134.75-55 chr5 53484869 53485221 + 0.75 NA exon (NM_006350, exon 5 of 6) exon (NM_006350, exon 5 of 6) 4416 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 124.5-80 chr4 85576954 85577301 + 0.75 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 101977 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 129.25-25 chr14 42639203 42639508 + 0.75 NA Intergenic L1MEc|LINE|L1 1032499 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 182.75-15 chr16 56465716 56466067 + 0.75 NA intron (NM_001324363, intron 4 of 11) L1ME4a|LINE|L1 13807 NM_001324358 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 125.5-4 chr1 75713193 75713420 + 0.75 NA Intergenic L2|LINE|L2 -11041 NM_001286044 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 221-19 chr2 13957661 13958300 + 0.75 NA Intergenic AluSg|SINE|Alu 442978 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 171.75-17 chr14 83159405 83159815 + 0.75 NA Intergenic L1ME1|LINE|L1 516978 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 139.75-26 chr14 49531836 49532198 + 0.75 NA Intergenic L1MA2|LINE|L1 54363 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 130.25-18 chr12 15425150 15425426 + 0.75 NA intron (NM_030667, intron 1 of 26) MIR|SINE|MIR 102780 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 114.5-93 chr7 14334741 14334964 + 0.75 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -343427 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 124.25-31 chr14 48229127 48229520 + 0.75 NA Intergenic Intergenic -434309 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 129.25-38 chr19 51611437 51611643 + 0.75 NA TTS (NM_003830) TTS (NM_003830) -17160 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 121-70 chr8 55704069 55704373 + 0.75 NA Intergenic Intergenic 69157 NM_001286661 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 145.5-15 chr10 126756336 126756531 + 0.75 NA Intergenic AluSg|SINE|Alu -85923 NM_001350921 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 231.5-13 chr15 67191236 67191628 + 0.75 NA 3' UTR (NM_005902, exon 9 of 9) 3' UTR (NM_005902, exon 9 of 9) 25277 NM_001145104 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 157.5-57 chr2 134689468 134689791 + 0.75 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 29371 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 188.5-45 chr5 135632714 135633153 + 0.75 NA intron (NM_001349335, intron 2 of 10) intron (NM_001349335, intron 2 of 10) 21002 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 126.75-24 chr14 67879076 67879350 + 0.75 NA intron (NM_133509, intron 5 of 10) MLT2C1|LTR|ERVL 55621 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 175.75-42 chr6 38548238 38548737 + 0.75 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 47580 NM_001172418 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 188.5-56 chr8 121391262 121391670 + 0.75 NA Intergenic L4_A_Mam|LINE|RTE-X -247880 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 121.5-38 chr15 51903134 51903486 + 0.75 NA intron (NM_014547, intron 9 of 9) intron (NM_014547, intron 9 of 9) 20810 NR_109775 100422556 Hs.664788 NR_109775 LOC100422556 - LEO1 homolog, Paf1/RNA polymerase II complex component pseudogene pseudo 132-6 chr1 214591413 214591641 + 0.75 NA Intergenic AluSx|SINE|Alu -11668 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 130-83 chr9 33886657 33886832 + 0.75 NA intron (NM_017811, intron 1 of 4) intron (NM_017811, intron 1 of 4) 47620 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 127.75-89 chr7 70863289 70863566 + 0.75 NA Intergenic Intergenic -268717 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 115-59 chr4 52073261 52073528 + 0.75 NA intron (NM_001346103, intron 2 of 8) MIRc|SINE|MIR 22090 NR_123728 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 183.75-2 chr1 33083767 33084078 + 0.75 NA intron (NM_001350399, intron 3 of 10) intron (NM_001350399, intron 3 of 10) 1744 NM_001301825 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 156-41 chr20 11926018 11926269 + 0.75 NA 3' UTR (NM_001282552, exon 4 of 4) 3' UTR (NM_001282552, exon 4 of 4) 8250 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 129-34 chr2 64173316 64173620 + 0.75 NA Intergenic Intergenic -29048 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 138.5-84 chr5 33605047 33605413 + 0.75 NA intron (NM_001324512, intron 14 of 21) intron (NM_001324512, intron 14 of 21) 164454 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 118.75-76 chr4 39108386 39108657 + 0.75 NA intron (NM_199039, intron 7 of 9) intron (NM_199039, intron 7 of 9) 46289 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 149.25-66 chr8 141996015 141996327 + 0.75 NA Intergenic Intergenic -180168 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 130.75-55 chr3 181496963 181497260 + 0.75 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -54625 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 177.25-28 chr2 212732880 212733284 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -62249 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 162.75-80 chrX 152622931 152623229 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14815 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 214 chr1 36500105 36500424 + 0.75 NA Intergenic L1MA7|LINE|L1 -16950 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 136.25-77 chr8 58734586 58734808 + 0.75 NA Intergenic AluSg4|SINE|Alu -74844 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 127.5-55 chr2 29992559 29992833 + 0.75 NA Intergenic L2c|LINE|L2 -71110 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 254.25-18 chr5 28947104 28947542 + 0.75 NA Intergenic L1ME3B|LINE|L1 20453 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 168.25-9 chr10 62721681 62722062 + 0.75 NA Intergenic Intergenic -82849 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 128.5-92 chr7 24419438 24419646 + 0.75 NA Intergenic Intergenic 135352 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 143-9 chr11 11855731 11856021 + 0.75 NA intron (NM_017944, intron 1 of 26) L2c|LINE|L2 14453 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 159.5-61 chr3 109871100 109871363 + 0.75 NA Intergenic Intergenic 268403 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 164-24 chr17 70984461 70984828 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 217535 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 217.25-21 chr3 49105602 49106095 + 0.75 NA Intergenic Intergenic -1091 NM_005051 5859 Hs.79322 NM_005051 ENSG00000172053 QARS GLNRS|MSCCA|PRO2195 glutaminyl-tRNA synthetase protein-coding 134.5-63 chr3 121855793 121856056 + 0.75 NA intron (NM_018456, intron 3 of 5) intron (NM_018456, intron 3 of 5) 20715 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 227.25-20 chr2 36646384 36646729 + 0.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -48388 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 154.25-46 chr3 128477043 128477304 + 0.75 NA Intergenic L2a|LINE|L2 -9925 NM_153330 165721 Hs.518241 NM_153330 ENSG00000179407 DNAJB8 CT156|DJ6 DnaJ heat shock protein family (Hsp40) member B8 protein-coding 200.25-7 chr10 5882244 5882741 + 0.75 NA intron (NM_019046, intron 5 of 7) A-rich|Low_complexity|Low_complexity -7080 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 172-49 chr8 140240601 140241082 + 0.75 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -140306 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 207.75-4 chr1 209260711 209261096 + 0.75 NA Intergenic L1M3|LINE|L1 -64553 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 203.5-14 chr14 36305050 36305478 + 0.75 NA intron (NM_001308110, intron 6 of 7) intron (NM_001308110, intron 6 of 7) 15373 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 113.25-101 chr6 54715072 54715273 + 0.75 NA Intergenic Intergenic -131599 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 144.5-26 chr12 7971388 7971733 + 0.75 NA Intergenic Intergenic -35373 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 137.5-90 chr4 153373809 153374067 + 0.75 NA intron (NR_045605, intron 6 of 9) intron (NR_045605, intron 6 of 9) 29250 NR_045605 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 138.5-44 chr16 88777941 88778272 + 0.75 NA intron (NM_001142864, intron 1 of 50) intron (NM_001142864, intron 1 of 50) 7114 NM_001142864 9780 Hs.377001 NM_001142864 ENSG00000103335 PIEZO1 DHS|FAM38A|LMPH3|LMPHM6|Mib piezo type mechanosensitive ion channel component 1 protein-coding 142.5-74 chr4 160516752 160517020 + 0.75 NA Intergenic MIR3|SINE|MIR -739102 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 132.25-56 chr21 38709941 38710206 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -48290 NR_111949 2078 Hs.473819 NM_004449 ENSG00000157554 ERG erg-3|p55 ETS transcription factor ERG protein-coding 153.25-35 chr3 1496317 1496585 + 0.75 NA Intergenic Intergenic 403427 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 120.5-12 chr10 36801583 36801767 + 0.75 NA Intergenic Intergenic -324182 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 152.5-27 chr12 39108081 39108484 + 0.75 NA Intergenic Intergenic -202691 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 199.75-19 chr2 54130981 54131386 + 0.75 NA intron (NM_001320588, intron 1 of 3) intron (NM_001320588, intron 1 of 3) 7900 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 181-39 chr4 43978732 43979126 + 0.75 NA Intergenic Intergenic -37932 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 258.25-20 chr5 64682587 64683026 + 0.75 NA Intergenic Intergenic -7697 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 136.5-69 chr3 51774649 51774880 + 0.75 NA Intergenic Intergenic 4473 NM_001368368 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 146.5-10 chr10 56889845 56890214 + 0.75 NA Intergenic L2a|LINE|L2 414530 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 149.75-59 chr6 128711900 128712168 + 0.75 NA Intergenic Intergenic -171104 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 205.25-25 chr3 115723495 115723872 + 0.75 NA Intergenic Intergenic 100173 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 166.5-51 chr19 28617961 28618340 + 0.75 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 11462 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 115.5-61 chr3 131007677 131007853 + 0.75 NA intron (NM_001001486, intron 27 of 27) intron (NM_001001486, intron 27 of 27) 19089 NR_110229 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 114.75-78 chr5 44566681 44566915 + 0.75 NA Intergenic L1MC1|LINE|L1 -56516 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 140-38 chr2 228433785 228434076 + 0.75 NA Intergenic Intergenic 177465 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 152.75-66 chr8 125503352 125503710 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 71322 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 131.5-83 chr7 2939081 2939495 + 0.75 NA intron (NM_001324281, intron 7 of 25) intron (NM_001324281, intron 7 of 25) -94980 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 129.25-60 chr5 3134274 3134575 + 0.75 NA Intergenic L1MCa|LINE|L1 -43411 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 149.5-47 chr18 67176061 67176358 + 0.75 NA Intergenic MER45A|DNA|hAT-Tip100 94625 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 132.25-63 chr3 165013286 165013600 + 0.75 NA intron (NM_001041, intron 33 of 47) intron (NM_001041, intron 33 of 47) 65053 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 248-21 chr8 59089809 59090296 + 0.75 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 29095 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 161-17 chr11 46827481 46827770 + 0.75 NA intron (NM_001008938, intron 1 of 43) AluJr|SINE|Alu 18655 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 222.75-30 chr4 70802261 70802831 + 0.75 NA intron (NM_001037442, intron 15 of 17) intron (NM_001037442, intron 15 of 17) 36957 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 113.25-19 chr11 69863155 69863449 + 0.75 NA Intergenic MIR|SINE|MIR -43886 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 174-40 chr4 147154029 147154288 + 0.75 NA Intergenic L1M5|LINE|L1 190559 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 144.25-15 chr11 84394679 84394959 + 0.75 NA intron (NM_001142699, intron 7 of 27) AluSg|SINE|Alu -77480 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150.75-21 chr17 58070967 58071240 + 0.75 NA Intergenic Intergenic 12101 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 130.5-82 chr6 138500251 138500584 + 0.75 NA promoter-TSS (NM_001144060) promoter-TSS (NM_001144060) -923 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 140.75-13 chr12 5540593 5540912 + 0.75 NA Intergenic L1PB2|LINE|L1 46620 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 144.75-73 chr6 18559102 18559484 + 0.75 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) -12491 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 136-30 chr2 14859917 14860140 + 0.75 NA Intergenic L1MA4|LINE|L1 227311 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 187.25-63 chr8 113947701 113948028 + 0.75 NA Intergenic Intergenic -510925 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 135-2 chr1 60684229 60684456 + 0.75 NA intron (NR_110628, intron 4 of 5) L1MA2|LINE|L1 -61657 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 113.25-52 chr17 3258857 3259099 + 0.75 NA Intergenic Intergenic 18302 NR_145519 653166 Hs.653087 NM_003552 ENSG00000255095 OR1D4 OR17-30 olfactory receptor family 1 subfamily D member 4 (gene/pseudogene) protein-coding 142.25-71 chr8 112625515 112625855 + 0.75 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -17808 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 145.5-37 chr18 4409174 4409503 + 0.75 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 45928 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 176.75-5 chr10 15275312 15275688 + 0.75 NA intron (NM_001010924, intron 3 of 7) AluSz|SINE|Alu 95789 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 138.75-80 chr9 28191647 28191914 + 0.75 NA intron (NM_152570, intron 5 of 6) L2b|LINE|L2 527525 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 189.5-24 chr19 37435627 37435972 + 0.75 NA intron (NM_152484, intron 3 of 5) L1MA3|LINE|L1 31645 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 115-32 chr16 75996459 75996756 + 0.75 NA Intergenic Intergenic -270117 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 127-6 chr1 115296750 115297045 + 0.75 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 13863 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 142.75-79 chr7 46699292 46699555 + 0.75 NA Intergenic L1MC2|LINE|L1 -2301 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 136.5-5 chr1 81880855 81881177 + 0.75 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 78563 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 164.5-92 chr7 86865273 86865514 + 0.75 NA TTS (NM_000840) TTS (NM_000840) 100506 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 135.75-42 chr2 19764215 19764482 + 0.75 NA Intergenic Intergenic -104506 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 144.25-31 chr17 58951126 58951392 + 0.75 NA intron (NM_014906, intron 1 of 6) 7SLRNA|srpRNA|srpRNA 155621 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 121.25-40 chr21 25433428 25433602 + 0.75 NA Intergenic L2a|LINE|L2 -1814 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 168-21 chr12 61180176 61180572 + 0.75 NA Intergenic L1MC4|LINE|L1 1012465 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 119.25-6 chr1 231938016 231938298 + 0.75 NA intron (NR_126441, intron 1 of 3) MLT1E2|LTR|ERVL-MaLR 12323 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 202.5-53 chr7 107186601 107186923 + 0.75 NA intron (NM_001244262, intron 6 of 10) intron (NM_001244262, intron 6 of 10) 17759 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 172-5 chr10 89362102 89362478 + 0.75 NA Intergenic Intergenic -15766 NM_001010987 439996 Hs.500491 NM_001010987 ENSG00000204010 IFIT1B IFIT1L|bA149I23.6 interferon induced protein with tetratricopeptide repeats 1B protein-coding 171.5-41 chr2 48457106 48457399 + 0.75 NA intron (NR_024188, intron 3 of 21) intron (NR_024188, intron 3 of 21) 16483 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 128-29 chr2 152704293 152704534 + 0.75 NA intron (NM_001365601, intron 2 of 24) HERVIP10F-int|LTR|ERV1 13048 NM_001365601 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 180.5-65 chr4 38021801 38022056 + 0.75 NA intron (NM_001253912, intron 6 of 20) L2b|LINE|L2 61530 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 132.5-29 chr14 72455092 72455417 + 0.75 NA intron (NM_001370288, intron 4 of 16) intron (NM_001370288, intron 4 of 16) -61566 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 142.25-48 chr4 60990496 60990742 + 0.75 NA Intergenic Intergenic 68000 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 185.5-16 chr11 40492450 40492871 + 0.75 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -199530 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 118-56 chr5 62453127 62453381 + 0.75 NA intron (NM_016338, intron 5 of 29) intron (NM_016338, intron 5 of 29) 34370 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 141.25-38 chr16 56452596 56452834 + 0.75 NA intron (NM_001324358, intron 1 of 12) intron (NM_001324358, intron 1 of 12) 631 NM_001324358 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 140.75-8 chr11 22663970 22664257 + 0.75 NA Intergenic Intergenic -2498 NM_001351224 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 116.75-87 chr9 110192848 110193114 + 0.75 NA Intergenic Intergenic 15152 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 119.75-43 chr2 55395453 55395747 + 0.75 NA intron (NM_001254943, intron 2 of 33) intron (NM_001254943, intron 2 of 33) 24256 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 157-35 chr21 31666848 31667201 + 0.75 NA intron (NM_000454, intron 3 of 4) intron (NM_000454, intron 3 of 4) 7402 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 162.75-21 chr15 68679839 68680137 + 0.75 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 38485 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 162-62 chr8 137915520 137915801 + 0.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 167885 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 116-30 chr17 2289251 2289458 + 0.75 NA intron (NM_017575, intron 6 of 18) AluJr|SINE|Alu 14431 NM_017575 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 151.75-70 chr7 28205038 28205417 + 0.75 NA intron (NR_034097, intron 2 of 3) MIR|SINE|MIR -24432 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 115-20 chr11 57256141 57256326 + 0.75 NA Intergenic L1MB8|LINE|L1 -18780 NM_005161 187 Hs.438311 NM_005161 ENSG00000134817 APLNR AGTRL1|APJ|APJR|HG11 apelin receptor protein-coding 192.75-37 chr5 143761564 143761863 + 0.75 NA Intergenic Intergenic -50448 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 130.25-25 chr14 43514445 43514726 + 0.75 NA Intergenic L1PB1|LINE|L1 992698 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 144.25-71 chr6 135331666 135332125 + 0.75 NA intron (NM_017651, intron 23 of 27) MLT1B|LTR|ERVL-MaLR 92735 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 201.25-31 chr5 9562185 9562520 + 0.75 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 13525 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 115-37 chr2 50927622 50927817 + 0.75 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 104413 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 188.5-12 chr12 64437555 64437992 + 0.75 NA intron (NM_007235, intron 22 of 24) intron (NM_007235, intron 22 of 24) -14347 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 118.25-74 chr5 24817630 24817848 + 0.75 NA Intergenic Intergenic 22844 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 162-38 chr4 74416144 74416407 + 0.75 NA Intergenic Intergenic -28861 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 151.25-18 chr14 74560307 74560633 + 0.75 NA intron (NM_000428, intron 3 of 35) intron (NM_000428, intron 3 of 35) 51767 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 197.25-35 chr2 43991866 43992171 + 0.75 NA intron (NM_133259, intron 1 of 37) L2b|LINE|L2 3971 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 144.75-23 chr12 53349987 53350350 + 0.75 NA Intergenic AluSx|SINE|Alu -5375 NM_001300837 121340 Hs.209402 NM_152860 ENSG00000170374 SP7 OI11|OI12|OSX|osterix Sp7 transcription factor protein-coding 141-11 chr10 115011563 115011898 + 0.75 NA Intergenic MSTB1|LTR|ERVL-MaLR 17073 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 135.75-48 chr2 105924034 105924347 + 0.75 NA Intergenic L1MD|LINE|L1 72343 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 210.5-35 chr20 16723728 16724312 + 0.75 NA Intergenic Intergenic -6006 NM_003092 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 135-23 chr14 65581605 65581898 + 0.75 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 110649 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 144.5-71 chr3 64107213 64107576 + 0.75 NA intron (NM_001370528, intron 7 of 7) intron (NM_001370528, intron 7 of 7) 3924 NR_046701 100874242 Hs.668874 NR_046701 PRICKLE2-AS2 - PRICKLE2 antisense RNA 2 ncRNA 163.5-47 chr21 31754085 31754441 + 0.75 NA Intergenic Intergenic -22145 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 145.5-87 chr7 13703281 13703614 + 0.75 NA Intergenic Intergenic 283067 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 134.75-16 chr12 86413654 86414046 + 0.75 NA intron (NM_001351286, intron 3 of 7) L2|LINE|L2 -156551 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 173.25-38 chr22 31929226 31929678 + 0.75 NA Intergenic L2a|LINE|L2 9002 NM_001302819 25775 Hs.627602 NM_015372 ENSG00000128254 C22orf24 HSN44A4A chromosome 22 open reading frame 24 protein-coding 134.75-19 chr16 47010846 47011096 + 0.75 NA Intergenic AluJo|SINE|Alu -37297 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 175.5-70 chr6 166562352 166562738 + 0.75 NA intron (NM_001006932, intron 2 of 21) L2c|LINE|L2 -17855 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 135.25-72 chr5 11062089 11062442 + 0.75 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -301031 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 211.75-11 chr11 80460069 80460640 + 0.75 NA Intergenic Intergenic 302449 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 192.5-5 chr10 52612914 52613336 + 0.75 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 142279 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 128.5-34 chr17 73403604 73403918 + 0.75 NA intron (NM_001144952, intron 18 of 44) UCON7|DNA?|DNA? -91760 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 121.75-41 chr2 118108419 118108617 + 0.75 NA 3' UTR (NM_016133, exon 6 of 6) 3' UTR (NM_016133, exon 6 of 6) 19968 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 135-33 chr18 24424146 24424449 + 0.75 NA Intergenic Intergenic -2373 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 167.75-36 chr2 183126663 183127043 + 0.75 NA intron (NM_138285, intron 1 of 8) intron (NM_138285, intron 1 of 8) 2410 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 114.75-15 chr10 78569873 78570154 + 0.75 NA Intergenic Intergenic 302671 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 126.25-50 chr2 226100301 226100637 + 0.75 NA Intergenic Intergenic -42325 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 119.75-90 chr8 137883339 137883577 + 0.75 NA intron (NR_161374, intron 2 of 7) THE1B|LTR|ERVL-MaLR 200087 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 168-36 chr19 2766178 2766504 + 0.75 NA intron (NM_003021, intron 4 of 11) L1MB7|LINE|L1 16932 NM_003021 6449 Hs.203910 NM_003021 ENSG00000104969 SGTA SGT|alphaSGT|hSGT small glutamine rich tetratricopeptide repeat containing alpha protein-coding 160-22 chr2 154415865 154416171 + 0.75 NA intron (NM_052917, intron 11 of 12) intron (NM_052917, intron 11 of 12) 41420 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 201-34 chr3 121911730 121912161 + 0.75 NA intron (NM_021082, intron 4 of 21) intron (NM_021082, intron 4 of 21) 17544 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 119.75-40 chr18 79767636 79767910 + 0.75 NA Intergenic Intergenic 86343 NM_001202504 9150 Hs.465490 NM_004715 ENSG00000060069 CTDP1 CCFDN|FCP1 CTD phosphatase subunit 1 protein-coding 146.75-38 chr4 81592917 81593230 + 0.75 NA Intergenic Intergenic -121166 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 131-69 chr7 44275512 44275744 + 0.75 NA intron (NM_172081, intron 2 of 18) MER53|DNA|hAT 49966 NM_001220 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 135.5-65 chr20 55357318 55357642 + 0.75 NA Intergenic Intergenic -65563 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 147.5-48 chr2 86306490 86306863 + 0.75 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 30950 NM_001371279 121.25-5 chr10 101958772 101959003 + 0.75 NA intron (NM_024541, intron 20 of 25) intron (NM_024541, intron 20 of 25) 97286 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 186.25-10 chr11 22147469 22147733 + 0.75 NA Intergenic L1PA10|LINE|L1 -45484 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 178.5-60 chr5 33625030 33625326 + 0.75 NA intron (NM_030955, intron 13 of 23) intron (NM_030955, intron 13 of 23) 184402 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 134.25-53 chr22 45872115 45872294 + 0.75 NA Intergenic AluSz|SINE|Alu 104958 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 115.25-38 chr17 28537419 28537676 + 0.75 NA 3' UTR (NM_003593, exon 8 of 8) 3' UTR (NM_003593, exon 8 of 8) 13606 NM_003593 8456 Hs.58611 NM_003593 ENSG00000109101 FOXN1 FKHL20|RONU|WHN forkhead box N1 protein-coding 152.75-7 chr11 11865813 11866225 + 0.75 NA intron (NM_017944, intron 1 of 26) L1MB3|LINE|L1 24596 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 172-3 chr1 215636252 215636627 + 0.75 NA intron (NM_206933, intron 69 of 71) intron (NM_206933, intron 69 of 71) 69135 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 196.25-13 chr13 72890618 72890960 + 0.75 NA intron (NR_146206, intron 10 of 16) intron (NR_146206, intron 10 of 16) 108656 NR_146205 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 165-41 chr4 48203620 48203989 + 0.75 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) 66034 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 199.75-22 chr21 23229566 23229872 + 0.75 NA Intergenic Intergenic 150435 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 142.75-2 chr1 95445066 95445335 + 0.75 NA Intergenic L1MA4|LINE|L1 -29537 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 188.5-30 chr2 148490560 148491037 + 0.75 NA intron (NM_018328, intron 12 of 14) intron (NM_018328, intron 12 of 14) -153953 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 181.25-44 chr4 64635384 64635739 + 0.75 NA Intergenic L1PA4|LINE|L1 -226101 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 139.75-3 chr1 68546887 68547118 + 0.75 NA Intergenic L4_C_Mam|LINE|RTE-X -49920 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 143-11 chr11 23603870 23604271 + 0.75 NA Intergenic Intergenic -184880 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 123.5-83 chr4 187080966 187081247 + 0.75 NA Intergenic Intergenic -120880 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 239.5-30 chr8 105344665 105345151 + 0.75 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 25365 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 186.25-37 chr3 124506140 124506605 + 0.75 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -78286 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 112.75-56 chr21 20503812 20504081 + 0.75 NA Intergenic L1PA15-16|LINE|L1 -245261 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 129-36 chr2 104204208 104204405 + 0.75 NA Intergenic Intergenic 204026 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 121.5-75 chr20 63344640 63344865 + 0.75 NA non-coding (NR_046317, exon 6 of 6) non-coding (NR_046317, exon 6 of 6) -15236 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 133-20 chr14 55783298 55783516 + 0.75 NA intron (NR_026796, intron 3 of 3) L1PREC2|LINE|L1 13267 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 124-46 chr4 103756833 103757256 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -37059 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 120.25-39 chr20 14779714 14779876 + 0.75 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 149723 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 142-52 chr5 35162597 35162933 + 0.75 NA intron (NM_000949, intron 1 of 9) MIR3|SINE|MIR -44643 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 276-7 chr18 6676890 6677404 + 0.75 NA Intergenic L1ME4a|LINE|L1 -52569 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 199.75-30 chr4 34296135 34296424 + 0.75 NA Intergenic Intergenic -26532 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 151-46 chr4 59416845 59417126 + 0.75 NA Intergenic Intergenic 403412 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 136.5-84 chr4 114186898 114187240 + 0.75 NA Intergenic LTR52|LTR|ERVL -207422 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 126.5-21 chr11 79683343 79683574 + 0.75 NA Intergenic L1ME3B|LINE|L1 -242428 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 186.25-50 chr7 49279666 49280106 + 0.75 NA Intergenic HSMAR1|DNA|TcMar-Mariner 355339 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 128.25-19 chr12 18264139 18264441 + 0.75 NA intron (NM_001288774, intron 1 of 32) L1MEd|LINE|L1 2750 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 146-28 chr2 80564156 80564513 + 0.75 NA intron (NM_001282599, intron 6 of 11) intron (NM_001282599, intron 6 of 11) 250955 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 149-49 chr6 126031896 126032243 + 0.75 NA intron (NM_001031712, intron 12 of 12) L2|LINE|L2 45529 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 113.5-71 chr21 40345043 40345263 + 0.75 NA intron (NR_073202, intron 6 of 32) L1MEf|LINE|L1 -37930 NR_038900 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 304.75-8 chr4 39163029 39163513 + 0.75 NA Intergenic MIRc|SINE|MIR -19258 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 173.5-36 chr18 62495168 62495473 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -27705 NM_017742 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 159.5-7 chr1 205600335 205600623 + 0.75 NA 3' UTR (NM_181644, exon 10 of 10) 3' UTR (NM_181644, exon 10 of 10) -31174 NR_027086 284578 Hs.537020 NR_027086 MFSD4A-AS1 - MFSD4A antisense RNA 1 ncRNA 127.25-86 chr6 155262653 155262869 + 0.75 NA intron (NM_016020, intron 5 of 6) intron (NM_016020, intron 5 of 6) -1252 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 135.25-40 chr2 18504049 18504245 + 0.75 NA Intergenic Intergenic 56506 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 114-45 chr19 49290137 49290410 + 0.75 NA exon (NM_014037, exon 12 of 12) exon (NM_014037, exon 12 of 12) 18595 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 159.25-39 chr20 6616457 6616825 + 0.75 NA Intergenic MLT1H2|LTR|ERVL-MaLR 119495 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 114.75-62 chr3 48243049 48243283 + 0.75 NA intron (NM_016089, intron 1 of 3) MER58B|DNA|hAT-Charlie 2062 NM_016089 51385 Hs.172602 NM_016089 ENSG00000164048 ZNF589 SZF1 zinc finger protein 589 protein-coding 125.5-117 chr7 40545807 40546084 + 0.75 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 410969 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 127.75-99 chr8 140297415 140297656 + 0.75 NA intron (NM_001160372, intron 11 of 22) intron (NM_001160372, intron 11 of 22) 160209 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 129-52 chr4 109059236 109059459 + 0.75 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 243311 NM_198721 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 158-64 chr8 59747518 59747804 + 0.75 NA Intergenic L1ME3A|LINE|L1 533739 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 178.25-20 chr17 26709917 26710269 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 379148 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 137.75-39 chr18 12166409 12166605 + 0.75 NA Intergenic L1MA2|LINE|L1 -34272 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 190.75-31 chr2 56675869 56676328 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -490328 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 166.25-53 chr7 54761454 54761807 + 0.75 NA intron (NR_110040, intron 1 of 2) MLT1A|LTR|ERVL-MaLR 2317 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 144 chr1 15700361 15700683 + 0.75 NA intron (NM_015164, intron 1 of 19) intron (NM_015164, intron 1 of 19) 16202 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 178-2 chr1 105772316 105772841 + 0.75 NA Intergenic L1PB4|LINE|L1 -153643 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 191.25-12 chr10 119551005 119551548 + 0.75 NA Intergenic MER34D|LTR|ERV1 -8557 NM_001005339 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 195.75-32 chr3 141098110 141098422 + 0.75 NA intron (NM_080862, intron 2 of 2) L1M5|LINE|L1 46919 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 115-25 chr13 50232507 50232687 + 0.75 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 60579 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 114-23 chr12 29876566 29876793 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -91920 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 125.25-68 chr5 138198727 138199000 + 0.75 NA intron (NM_004661, intron 6 of 15) intron (NM_004661, intron 6 of 15) 14460 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 139-38 chr2 235020422 235020820 + 0.75 NA intron (NM_001371304, intron 2 of 5) intron (NM_001371304, intron 2 of 5) -7114 NM_001371306 155.25-77 chrUn_KI270589v1 43695 43975 + 0.75 NA NA (CATTC)n|Satellite|Satellite NA NA 179.5-87 chr7 109601515 109601856 + 0.75 NA Intergenic Intergenic 358528 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 176.5-15 chr11 98426226 98426500 + 0.75 NA Intergenic L1MA9|LINE|L1 -594586 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 171-56 chr8 52477232 52477547 + 0.75 NA Intergenic Intergenic -67510 NM_001352834 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 124.75-61 chr3 131902927 131903173 + 0.75 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 82881 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 144.75-86 chr8 102715800 102716106 + 0.75 NA Intergenic AluSz6|SINE|Alu 59705 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 120.25-59 chr5 50279118 50279380 + 0.75 NA Intergenic Intergenic 162039 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 190.25-32 chr3 31645910 31646354 + 0.75 NA Intergenic L1M5|LINE|L1 -58081 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 173-12 chr12 4962772 4963208 + 0.75 NA Intergenic MIR|SINE|MIR 53085 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 119-76 chr8 130796193 130796546 + 0.75 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 244540 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 115.25-95 chr9 86797090 86797283 + 0.75 NA Intergenic Intergenic 150320 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 155.5-70 chr22 25732763 25733104 + 0.75 NA Intergenic MIR|SINE|MIR -9255 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 224.75-17 chr4 60564856 60565326 + 0.75 NA Intergenic L1MA1|LINE|L1 -357528 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 140-47 chr4 114774144 114774405 + 0.75 NA Intergenic L1MA4|LINE|L1 117515 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 135-62 chr5 148570054 148570333 + 0.75 NA intron (NM_001040172, intron 1 of 5) intron (NM_001040172, intron 1 of 5) 66868 NM_001040173 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 243.75-13 chr2 48016939 48017383 + 0.75 NA Intergenic AluSz|SINE|Alu -111368 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 143.75-10 chr10 62353415 62353777 + 0.75 NA intron (NR_104162, intron 2 of 3) MLT1F-int|LTR|ERVL-MaLR -20561 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 136.5-15 chr10 113710223 113710490 + 0.75 NA intron (NM_001267058, intron 1 of 5) intron (NM_001267058, intron 1 of 5) 1011 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 144.75-49 chr20 58336479 58336704 + 0.75 NA intron (NM_020673, intron 2 of 6) intron (NM_020673, intron 2 of 6) 26876 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 172-30 chr4 33119669 33120064 + 0.75 NA Intergenic Intergenic 768828 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 209.75-24 chr20 47403080 47403426 + 0.75 NA intron (NR_146496, intron 1 of 2) AluSx1|SINE|Alu 8141 NR_146494 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 149.5-71 chr3 121124966 121125290 + 0.75 NA intron (NR_145517, intron 7 of 8) intron (NR_145517, intron 7 of 8) 75488 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 133.5-82 chr4 110790188 110790503 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 70302 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 193.25-25 chr3 54485248 54485656 + 0.75 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 154405 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 169.25-52 chr8 31748178 31748516 + 0.75 NA intron (NM_013962, intron 1 of 4) MIR|SINE|MIR 108595 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 211.5-53 chr7 42738895 42739293 + 0.75 NA Intergenic LTR16C|LTR|ERVL -32647 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 119.25-85 chr7 19706777 19707144 + 0.75 NA intron (NM_001002926, intron 1 of 3) intron (NM_001002926, intron 1 of 3) -1524 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 113.75-114 chr8 129843022 129843268 + 0.75 NA intron (NM_001353307, intron 13 of 13) intron (NM_001353307, intron 13 of 13) -56521 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 196.75-27 chr4 39132886 39133350 + 0.75 NA Intergenic Intergenic -49411 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 185-45 chr8 137602320 137602628 + 0.75 NA Intergenic Intergenic -188886 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 140.25-63 chr4 46168295 46168531 + 0.75 NA Intergenic Intergenic -44359 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 140.5-32 chr16 52917593 52917854 + 0.75 NA Intergenic L1PA17|LINE|L1 135150 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 216.25-25 chr3 163877625 163878065 + 0.75 NA Intergenic MER51D|LTR|ERV1 293711 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 140.75-31 chr2 106935257 106935471 + 0.75 NA Intergenic Intergenic -48255 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 113-42 chr2 31748100 31748426 + 0.75 NA Intergenic Intergenic 55717 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 212.5-54 chr8 125130464 125130983 + 0.75 NA intron (NM_001349486, intron 3 of 7) L1MC3|LINE|L1 38863 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 155.75-70 chr8 125752616 125752968 + 0.75 NA Intergenic L2c|LINE|L2 198405 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 225-4 chr10 19724179 19724663 + 0.75 NA intron (NR_120646, intron 1 of 4) intron (NR_120646, intron 1 of 4) 4129 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 153.25-42 chr4 172445692 172446025 + 0.75 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 243059 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 203-38 chr8 64733782 64734152 + 0.75 NA intron (NM_004820, intron 1 of 5) AluJr|SINE|Alu 64770 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 144.5-98 chr6 120963719 120964047 + 0.75 NA Intergenic Intergenic 370597 NM_152730 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 125-73 chr4 130509644 130509856 + 0.75 NA Intergenic MER92-int|LTR|ERV1 133389 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 285.25-11 chr2 198805998 198806544 + 0.75 NA Intergenic Intergenic -431174 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 160.75-45 chr3 160840859 160841303 + 0.75 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -1068 NM_001317912 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 191.75-17 chr17 63282489 63282976 + 0.75 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 157535 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 130-17 chr12 84276297 84276562 + 0.75 NA Intergenic LTR50|LTR|ERVL 636370 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 164.25-66 chr9 71084988 71085383 + 0.75 NA intron (NM_001366143, intron 1 of 25) L1PA16|LINE|L1 36436 NM_001366152 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 168-34 chr17 70601720 70602021 + 0.75 NA Intergenic Intergenic 432335 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 162.75-6 chr10 6353007 6353374 + 0.75 NA non-coding (NR_148966, exon 1 of 1) non-coding (NR_148966, exon 1 of 1) 2874 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 126.75-49 chr2 209551843 209552056 + 0.75 NA intron (NM_001039538, intron 2 of 14) MIRb|SINE|MIR -27387 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 116.75-18 chr12 92404314 92404580 + 0.75 NA Intergenic Intergenic -17084 NR_027932 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 132.5-62 chr20 39361424 39361645 + 0.75 NA Intergenic L2|LINE|L2 -136786 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 164.25-10 chr10 57256518 57256874 + 0.75 NA Intergenic L1PB1|LINE|L1 47863 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 119.5-28 chr12 44122525 44122798 + 0.75 NA intron (NM_001286212, intron 3 of 6) L1PA11|LINE|L1 286580 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 128.5-31 chr17 26812919 26813255 + 0.75 NA Intergenic Intergenic 276154 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 121.75-76 chr6 142314308 142314549 + 0.75 NA intron (NM_198569, intron 2 of 24) L3|LINE|CR1 12421 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 178.5-74 chr7 46330040 46330332 + 0.75 NA Intergenic (TGTT)n|Simple_repeat|Simple_repeat 366936 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 161-52 chr4 178551161 178551497 + 0.75 NA Intergenic AluJo|SINE|Alu -643393 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 145-66 chr8 92536680 92536988 + 0.75 NA Intergenic Intergenic 118660 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 186.75-22 chr17 66631195 66631499 + 0.75 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -155725 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 124.5-4 chr1 110474450 110474743 + 0.75 NA Intergenic Intergenic -6170 NR_003599 643160 Hs.532720 NR_003599 ENSG00000240194 CYMP - chymosin pseudogene pseudo 132-42 chr20 3903929 3904138 + 0.75 NA intron (NM_001324191, intron 2 of 7) AluSq2|SINE|Alu -13461 NR_029519 406896 NR_029519 ENSG00000199024 MIR103A2 MIR103-2|MIRN103-2|mir-103a-2 microRNA 103a-2 ncRNA 136.5-72 chr3 134158932 134159330 + 0.75 NA intron (NM_001005861, intron 14 of 14) intron (NM_001005861, intron 14 of 14) 91613 NM_002958 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 180.25-36 chr22 31199821 31200100 + 0.75 NA intron (NR_024210, intron 5 of 6) intron (NR_024210, intron 5 of 6) -12338 NM_005569 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 169.75-30 chr19 41346885 41347176 + 0.75 NA intron (NM_000660, intron 2 of 6) MER3|DNA|hAT-Charlie 6892 NM_000660 7040 Hs.645227 NM_000660 ENSG00000105329 TGFB1 CED|DPD1|IBDIMDE|LAP|TGFB|TGFbeta transforming growth factor beta 1 protein-coding 223-14 chr13 83435420 83435778 + 0.75 NA Intergenic Intergenic 446794 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 170-44 chr5 9541255 9541635 + 0.75 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 4630 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 142.75-59 chr3 187856599 187856818 + 0.75 NA Intergenic Intergenic -111240 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 143.75-44 chr2 12777197 12777525 + 0.75 NA Intergenic Intergenic 39994 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 116.5-62 chr2 119393311 119393565 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger 25763 NM_001079863 1622 Hs.78888 NM_020548 ENSG00000155368 DBI ACBD1|ACBP|CCK-RP|EP diazepam binding inhibitor, acyl-CoA binding protein protein-coding 142.75-73 chr6 6694912 6695102 + 0.75 NA Intergenic LTR1|LTR|ERV1 -72181 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 142.75-85 chr8 81452806 81453068 + 0.75 NA Intergenic Intergenic -5498 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 119-17 chr12 118804036 118804244 + 0.75 NA Intergenic L1MB7|LINE|L1 29396 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 114-80 chr6 162803565 162803838 + 0.75 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 75731 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 227.25-33 chr6 144935999 144936480 + 0.75 NA Intergenic LTR78|LTR|ERV1 530584 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 134.75-72 chr8 98732735 98733013 + 0.75 NA intron (NM_006281, intron 4 of 10) intron (NM_006281, intron 4 of 10) 92797 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 189.5-68 chr8 49133056 49133512 + 0.75 NA Intergenic Intergenic 60940 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 206.75-23 chr4 171329202 171329666 + 0.75 NA Intergenic L1M1|LINE|L1 143250 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 152-7 chr1 227712109 227712479 + 0.75 NA Intergenic Intergenic -14587 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 127.5-93 chr5 12969606 12969979 + 0.75 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 63094 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 125.5-74 chr21 27812845 27813053 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie 90570 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 211.75-12 chr11 96952251 96952793 + 0.75 NA Intergenic Intergenic 444097 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 205.5-10 chr12 60258909 60259441 + 0.75 NA Intergenic Intergenic 569805 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 158.5-98 chr7 124623388 124623792 + 0.75 NA Intergenic L1MA7|LINE|L1 142202 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 157.75-26 chr15 49728889 49729234 + 0.75 NA Intergenic L1M2|LINE|L1 108013 NM_001144955 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 140-32 chr2 50418236 50418475 + 0.75 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -70599 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 183-10 chr10 78814126 78814541 + 0.75 NA Intergenic Intergenic 253115 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 147.75-27 chr15 67220663 67220897 + 0.75 NA intron (NM_001271885, intron 5 of 9) X7C_LINE|LINE|CR1 33881 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 175.75-9 chr14 69942609 69942883 + 0.75 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -35387 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 140-18 chr14 47656023 47656452 + 0.75 NA intron (NM_001113498, intron 1 of 16) ERVL-E-int|LTR|ERVL 18717 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 129.5-73 chr5 6564906 6565184 + 0.75 NA Intergenic L1ME3F|LINE|L1 -17091 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 128.5-57 chr3 45789243 45789540 + 0.75 NA intron (NM_022405, intron 1 of 9) L1M6|LINE|L1 7145 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 117.25-74 chr5 3195275 3195568 + 0.75 NA Intergenic Intergenic 17586 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 127.75-73 chr5 19977994 19978382 + 0.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 10012 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 134.25-43 chr2 241194793 241195043 + 0.75 NA intron (NM_001001666, intron 3 of 3) intron (NM_001001666, intron 3 of 3) 6241 NM_001370694 50636 Hs.163909 NM_001001666 ENSG00000146205 ANO7 D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G anoctamin 7 protein-coding 197.5 chr1 13970994 13971411 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 221787 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 129.75-73 chr7 40869275 40869635 + 0.75 NA Intergenic MLT1E3|LTR|ERVL-MaLR 110484 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 146-10 chr12 77220323 77220688 + 0.75 NA Intergenic Intergenic -154936 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 136.5-101 chr7 55946248 55946637 + 0.75 NA Intergenic Intergenic -5435 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 115.25-51 chr2 118540531 118540711 + 0.75 NA Intergenic MER102c|DNA|hAT-Charlie 62345 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 167-59 chr7 13460284 13460573 + 0.75 NA Intergenic Tigger4a|DNA|TcMar-Tigger 526086 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 142-27 chr2 9586806 9587107 + 0.75 NA intron (NM_006826, intron 5 of 5) intron (NM_006826, intron 5 of 5) -31126 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 196-24 chr21 36448912 36449428 + 0.75 NA Intergenic Intergenic 17297 NM_012130 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 170 chr1 235885546 235885921 + 0.75 NA Intergenic Intergenic -2020 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 120.75-67 chr3 125602355 125602603 + 0.75 NA Intergenic AluSp|SINE|Alu -6982 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 181.25-47 chr5 30479076 30479518 + 0.75 NA Intergenic Intergenic 598737 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 164.75-61 chr6 64060187 64060503 + 0.75 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 253509 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 200.75-27 chr22 40098090 40098562 + 0.75 NA intron (NM_001024843, intron 1 of 23) AluSx1|SINE|Alu 53509 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 169.25-26 chr2 19198794 19199186 + 0.75 NA Intergenic Tigger4|DNA|TcMar-Tigger -149439 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 141.5-7 chr1 175595020 175595266 + 0.75 NA intron (NM_003285, intron 1 of 22) AluSx1|SINE|Alu 148452 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 130.25-43 chr19 32194537 32194913 + 0.75 NA Intergenic Intergenic -88809 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 147-66 chr5 152856979 152857287 + 0.75 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 115216 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 220.75-13 chr18 65247097 65247401 + 0.75 NA Intergenic Intergenic -503003 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 220-15 chr17 17115701 17116166 + 0.75 NA intron (NM_201274, intron 3 of 23) intron (NM_201274, intron 3 of 23) 73173 NM_201274 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 127.75-37 chr16 83683825 83684067 + 0.75 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 120030 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 160.75-67 chr8 72368749 72369102 + 0.75 NA Intergenic Tigger7|DNA|TcMar-Tigger -117291 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 144.25-30 chr17 16093584 16093819 + 0.75 NA intron (NM_001190440, intron 20 of 44) intron (NM_001190440, intron 20 of 44) 59495 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 113.5-82 chr3 183504226 183504568 + 0.75 NA intron (NM_130446, intron 3 of 6) MIRb|SINE|MIR -44338 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 132-35 chr2 102680791 102680996 + 0.75 NA intron (NM_003048, intron 3 of 11) MLT1D|LTR|ERVL-MaLR 55995 NR_136174 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 120.5-77 chr4 103510335 103510676 + 0.75 NA Intergenic L1PA15|LINE|L1 85463 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 115-17 chr11 8984718 8984980 + 0.75 NA intron (NM_020645, intron 4 of 6) intron (NM_020645, intron 4 of 6) 19152 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 113.25-53 chr17 29600304 29600479 + 0.75 NA intron (NM_152345, intron 1 of 14) HAL1|LINE|L1 7259 NM_152345 124930 Hs.662164 NM_152345 ENSG00000198720 ANKRD13B - ankyrin repeat domain 13B protein-coding 258-30 chr7 13355154 13355794 + 0.75 NA Intergenic L1ME1|LINE|L1 631040 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 129.5-85 chr7 4178782 4178985 + 0.75 NA intron (NM_001079653, intron 9 of 19) intron (NM_001079653, intron 9 of 19) -44046 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 169.75-6 chr10 80378531 80378943 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 21956 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 120.75-28 chr14 26157773 26158022 + 0.75 NA Intergenic L1M4b|LINE|L1 395533 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 159.75-62 chr8 57740064 57740462 + 0.75 NA Intergenic Intergenic -5886 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 211-28 chr6 1719158 1719567 + 0.75 NA intron (NM_001253846, intron 9 of 10) intron (NM_001253846, intron 9 of 10) 109447 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 129.5-42 chr2 70238772 70238967 + 0.75 NA intron (NM_001351511, intron 1 of 12) AluJo|SINE|Alu 9759 NM_001351524 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 127-3 chr1 79286314 79286568 + 0.75 NA Intergenic Intergenic -279711 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 192-26 chr18 49144112 49144580 + 0.75 NA intron (NM_001353210, intron 14 of 16) L1MC5a|LINE|L1 -94578 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 189.5-9 chr12 103501939 103502258 + 0.75 NA Intergenic L2b|LINE|L2 6058 NR_135004 105369945 Hs.742785 NR_135004 LOC105369945 - uncharacterized LOC105369945 ncRNA 186-42 chr5 139523953 139524231 + 0.75 NA Intergenic MIRb|SINE|MIR -37074 NM_181838 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 150-10 chr1 199965727 199965984 + 0.75 NA Intergenic AluSz|SINE|Alu -61855 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 194.25-45 chr7 8116375 8116888 + 0.75 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 145421 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 120.25-62 chr6 90803946 90804134 + 0.75 NA Intergenic Intergenic -216968 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 116.75-22 chr13 57752284 57752608 + 0.75 NA Intergenic L1MD|LINE|L1 120702 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 163.25-56 chr5 53386327 53386673 + 0.75 NA Intergenic L1MCa|LINE|L1 -94129 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 148-6 chr10 44347829 44348058 + 0.75 NA Intergenic Intergenic 37154 NM_001277990 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 151.75-9 chr10 117779150 117779489 + 0.75 NA Intergenic Intergenic -234251 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 115-29 chr16 3713060 3713308 + 0.75 NA intron (NM_016292, intron 1 of 17) intron (NM_016292, intron 1 of 17) 4340 NM_016292 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 155.25-30 chr18 80252092 80252486 + 0.75 NA Intergenic Intergenic -4775 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 116.75-34 chr18 52341615 52341865 + 0.75 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 1543 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 136-41 chr20 57302327 57302606 + 0.75 NA Intergenic MIR|SINE|MIR 19125 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 152.25-60 chr7 48474285 48474648 + 0.75 NA intron (NM_152701, intron 45 of 61) LTR48B|LTR|ERV1 303008 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 182.25-9 chr12 41173868 41174305 + 0.75 NA Intergenic Intergenic -14234 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 161.5-32 chr14 74241389 74241769 + 0.75 NA intron (NM_182894, intron 2 of 4) intron (NM_182894, intron 2 of 4) 2130 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 189.75-48 chr8 137778101 137778509 + 0.75 NA Intergenic Intergenic 305240 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 157-59 chr6 155437289 155437573 + 0.75 NA intron (NM_015718, intron 6 of 13) intron (NM_015718, intron 6 of 13) 18408 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 195-31 chr2 222977538 222977941 + 0.75 NA Intergenic L2b|LINE|L2 -74191 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 171.5-31 chr16 72993893 72994223 + 0.75 NA intron (NM_006885, intron 1 of 9) X6B_LINE|LINE|CR1 54070 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 114.75-72 chr4 75352667 75352964 + 0.75 NA Intergenic Intergenic -1261 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 190.25-33 chr3 158237440 158237836 + 0.75 NA intron (NM_001271838, intron 4 of 9) L1M5|LINE|L1 127549 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 121.25-71 chr7 12054053 12054431 + 0.75 NA Intergenic Intergenic -157052 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 150.75-27 chr18 76403352 76403706 + 0.75 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -88123 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 200-49 chr8 124582255 124582587 + 0.75 NA intron (NM_001282971, intron 6 of 14) intron (NM_001282971, intron 6 of 14) 43298 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 170.75-20 chr13 80940532 80940803 + 0.75 NA Intergenic L1MC3|LINE|L1 -77724 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 125.75-55 chr4 33712168 33712395 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 327612 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 127-51 chr2 129561461 129561666 + 0.75 NA Intergenic Intergenic -287672 NR_122041 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 130-81 chr8 69481697 69482029 + 0.75 NA intron (NM_001128204, intron 1 of 21) intron (NM_001128204, intron 1 of 21) -10984 NM_001128205 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 114.75-105 chr8 116852809 116853066 + 0.75 NA intron (NM_006265, intron 9 of 13) intron (NM_006265, intron 9 of 13) -21487 NR_033886 644660 Hs.706174 NR_033886 ENSG00000253327 RAD21-AS1 C8orf81|NCRNA00255 RAD21 antisense RNA 1 ncRNA 226.75-12 chr19 4050976 4051483 + 0.75 NA intron (NM_015898, intron 2 of 2) intron (NM_015898, intron 2 of 2) 14300 NM_001317990 51341 Hs.591384 NM_015898 ENSG00000178951 ZBTB7A FBI-1|FBI1|LRF|TIP21|ZBTB7|ZNF857A|pokemon zinc finger and BTB domain containing 7A protein-coding 200.75-37 chr7 6045271 6045724 + 0.75 NA intron (NM_001134335, intron 6 of 14) MIRc|SINE|MIR 13678 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 113.5-129 chr9 36120987 36121218 + 0.75 NA intron (NM_021111, intron 19 of 20) intron (NM_021111, intron 19 of 20) -15434 NM_001287012 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 112.75-74 chr6 34650151 34650387 + 0.75 NA intron (NM_024294, intron 2 of 4) intron (NM_024294, intron 2 of 4) -45885 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 201.25-32 chr5 30554473 30554793 + 0.75 NA Intergenic Intergenic -639053 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 154.25-51 chr4 63037484 63037775 + 0.75 NA Intergenic Intergenic -875864 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 171-18 chr12 48431741 48432206 + 0.75 NA Intergenic L1MB8|LINE|L1 -40692 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 122.25-54 chr2 121679577 121679817 + 0.75 NA intron (NR_037857, intron 2 of 3) LTR23-int|LTR|ERV1 29708 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 156.5-45 chr3 6919797 6920136 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -25949 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 124.75-26 chr13 80888504 80888723 + 0.75 NA Intergenic Intergenic -129778 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 151-5 chr11 76525525 76525804 + 0.75 NA intron (NM_001300942, intron 13 of 21) intron (NM_001300942, intron 13 of 21) 80639 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 140.75-7 chr11 13102384 13102756 + 0.75 NA Intergenic Intergenic 93254 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 167-69 chr9 25128297 25128600 + 0.75 NA Intergenic (AATTTAT)n|Simple_repeat|Simple_repeat 550410 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 126-79 chr7 40523680 40524030 + 0.75 NA intron (NM_001193312, intron 11 of 12) L1M5|LINE|L1 388879 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 133.5-45 chr2 23296329 23296648 + 0.75 NA Intergenic Intergenic -88691 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 139.75-14 chr11 4977985 4978212 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -10093 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 172.25-10 chr11 77784953 77785373 + 0.75 NA intron (NM_016578, intron 1 of 15) L1MEc|LINE|L1 35671 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 115-80 chrX 24347730 24347941 + 0.75 NA Intergenic LTR80B|LTR|ERVL -14848 NM_001136234 100130302 Hs.717243 NM_001136234 SUPT20HL1 FAM48B1|SPT20L SUPT20H like 1 protein-coding 119.5-56 chr2 68690791 68690983 + 0.75 NA Intergenic Intergenic -43924 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 159-4 chr1 167398068 167398334 + 0.75 NA intron (NM_001198783, intron 11 of 15) intron (NM_001198783, intron 11 of 15) 69131 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 166.25-24 chr19 36895357 36895766 + 0.75 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 20478 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 139.25-55 chr22 48192480 48192728 + 0.75 NA Intergenic L1MD2|LINE|L1 -81760 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 164.5-50 chr20 62854749 62855027 + 0.75 NA intron (NM_001301726, intron 4 of 5) MIRb|SINE|MIR 6934 NM_001301726 10732 Hs.126248 NM_006602 ENSG00000101190 TCFL5 CHA|E2BP-1|Figlb|SOSF1|bHLHe82 transcription factor like 5 protein-coding 201-39 chr4 137166902 137167385 + 0.75 NA intron (NR_149105, intron 1 of 3) L1MC4|LINE|L1 -26613 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 205.75-5 chr11 78332971 78333450 + 0.75 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 8670 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 115.75-64 chr3 163315190 163315372 + 0.75 NA Intergenic L1ME4c|LINE|L1 -11980 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 141.25-33 chr14 56280781 56281179 + 0.75 NA intron (NM_021255, intron 3 of 5) L1ME4c|LINE|L1 162569 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 132.5-23 chr14 48234957 48235179 + 0.75 NA Intergenic Intergenic -440054 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 245.5-33 chr5 62302386 62302835 + 0.75 NA Intergenic L2a|LINE|L2 -3552 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 161-40 chr2 77940984 77941258 + 0.75 NA intron (NR_110288, intron 1 of 3) AluSq2|SINE|Alu 13905 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 160-34 chr5 17163306 17163682 + 0.75 NA intron (NR_027253, intron 1 of 2) LTR85b|LTR|Gypsy? -7502 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 140.25-39 chr2 173971822 173972048 + 0.75 NA Intergenic AluY|SINE|Alu -6233 NM_003111 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 130.25-10 chr1 244607397 244607742 + 0.75 NA intron (NM_001130957, intron 18 of 21) MLT1J2|LTR|ERVL-MaLR -45479 NR_123736 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 155.5-88 chr7 52431982 52432245 + 0.75 NA Intergenic AluSc|SINE|Alu -603520 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 119.75-20 chr12 75660607 75660951 + 0.75 NA Intergenic Intergenic -149170 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 125.75-16 chr11 133683331 133683544 + 0.75 NA Intergenic L1M5|LINE|L1 126939 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 117.25-100 chrX 25290817 25291169 + 0.75 NA Intergenic Intergenic -275028 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 130.25-57 chr21 30725685 30725976 + 0.75 NA Intergenic MLT2D|LTR|ERVL -7053 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 139.25-33 chr15 54236808 54237045 + 0.75 NA intron (NM_001080534, intron 4 of 30) intron (NM_001080534, intron 4 of 30) 224278 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 166.5-66 chr3 119197481 119197890 + 0.75 NA intron (NM_006952, intron 6 of 7) L2a|LINE|L2 24087 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 113.25-98 chr5 125273978 125274182 + 0.75 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -219181 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 126-40 chr18 44536199 44536610 + 0.75 NA intron (NR_131768, intron 1 of 4) intron (NR_131768, intron 1 of 4) 4625 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 225.75-23 chr6 126762417 126762866 + 0.75 NA Intergenic MamRTE1|LINE|RTE-BovB 278010 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 118.5-35 chr13 54747274 54747479 + 0.75 NA Intergenic Intergenic -427078 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 124.75-12 chr10 19392170 19392403 + 0.75 NA intron (NM_001142308, intron 28 of 39) MIRc|SINE|MIR 336264 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 178.25-46 chr4 100911676 100912195 + 0.75 NA Intergenic L1ME1|LINE|L1 -236822 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 127.25-43 chr18 11769431 11769749 + 0.75 NA intron (NM_001369387, intron 4 of 11) intron (NM_001369387, intron 4 of 11) 17505 NM_001369387 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 160-45 chr8 79736323 79736698 + 0.75 NA Intergenic AluSx1|SINE|Alu 29965 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 124.5-13 chr10 43657667 43658056 + 0.75 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -8980 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 175-60 chr9 78649130 78649442 + 0.75 NA Intergenic HAL1|LINE|L1 352161 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 186.25-6 chr10 62382976 62383429 + 0.75 NA intron (NM_199451, intron 2 of 7) L2b|LINE|L2 -8075 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 119.75-50 chr2 220442092 220442290 + 0.75 NA Intergenic Intergenic -535626 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 217.75-41 chr8 142792970 142793434 + 0.75 NA Intergenic Intergenic -6663 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 158-29 chr2 38656372 38656608 + 0.75 NA Intergenic AluSz|SINE|Alu -9624 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 203.25-36 chr4 32973251 32973690 + 0.75 NA Intergenic Intergenic 622432 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 149.75-45 chr4 48710857 48711071 + 0.75 NA intron (NM_015030, intron 1 of 63) L1MB7|LINE|L1 69335 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 245-6 chr11 45350925 45351395 + 0.75 NA Intergenic L1MDa|LINE|L1 -4211 NR_120557 101928812 Hs.444059 NR_120557 ENSG00000254427 LINC02696 - long intergenic non-protein coding RNA 2696 ncRNA 183.5-24 chr15 83569230 83569601 + 0.75 NA intron (NM_001324185, intron 5 of 9) L1ME4a|LINE|L1 78801 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 136.25-33 chr16 52176601 52176817 + 0.75 NA Intergenic MER113A|DNA|hAT-Charlie -81855 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 231-22 chr3 52684869 52685296 + 0.75 NA promoter-TSS (NM_206825) promoter-TSS (NM_206825) 517 NM_001350074 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 156.25-43 chr21 30577724 30578087 + 0.75 NA Intergenic Intergenic 12492 NM_001164434 100288287 Hs.580880 NM_001164434 ENSG00000206106 KRTAP22-2 KAP22.2 keratin associated protein 22-2 protein-coding 202.5-12 chr15 74286128 74286810 + 0.75 NA intron (NM_025055, intron 10 of 18) intron (NM_025055, intron 10 of 18) -32090 NM_001287181 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 145.75-70 chr8 63560618 63560914 + 0.75 NA Intergenic MER52-int|LTR|ERV1 94917 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 136.75-33 chr14 85717843 85718121 + 0.75 NA Intergenic ERVL-int|LTR|ERVL 184633 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 140.25-24 chr14 67564870 67565140 + 0.75 NA intron (NM_020715, intron 7 of 28) intron (NM_020715, intron 7 of 28) -31155 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 143-42 chr2 233812523 233812814 + 0.75 NA intron (NM_001367507, intron 24 of 41) L2c|LINE|L2 36944 NM_001367507 339766 Hs.361778 NM_001287395 ENSG00000185038 MROH2A HEATR7B1 maestro heat like repeat family member 2A protein-coding 125.5-32 chr12 65383981 65384224 + 0.75 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 105115 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 155-38 chr4 10262787 10263054 + 0.75 NA Intergenic Intergenic -146121 NM_005112 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 154-43 chr20 16260269 16260574 + 0.75 NA Intergenic Intergenic -274539 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 133.75-34 chr17 58995107 58995403 + 0.75 NA intron (NM_001005207, intron 24 of 24) L1MC4a|LINE|L1 111625 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 112.75-71 chr5 148500193 148500433 + 0.75 NA intron (NR_104445, intron 6 of 7) L2|LINE|L2 116355 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 121.25-93 chrX 55112720 55112970 + 0.75 NA Intergenic Intergenic 23827 NM_207339 203569 Hs.662489 NM_207339 ENSG00000234068 PAGE2 CT16.4|GAGEC2|GAGEE2|PAGE-2 PAGE family member 2 protein-coding 153.75-29 chr14 77145560 77145949 + 0.75 NA Intergenic L2a|LINE|L2 -3963 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 145-42 chr20 51254512 51254771 + 0.75 NA Intergenic LTR50|LTR|ERVL 198336 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 176.5-82 chr8 64264752 64265059 + 0.75 NA intron (NR_125826, intron 1 of 4) MIRb|SINE|MIR 103653 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 242-32 chr6 148156446 148156860 + 0.75 NA Intergenic Intergenic -115675 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 169.75-4 chr10 59172288 59172565 + 0.75 NA Intergenic Intergenic 4038 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 323-15 chr3 182788903 182789554 + 0.75 NA Intergenic Intergenic -4276 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 152.75-57 chr5 178461259 178461541 + 0.75 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 128993 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 223-9 chr11 109919783 109920349 + 0.75 NA Intergenic L1MC1|LINE|L1 -173326 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 142.5-60 chr4 36158465 36158886 + 0.75 NA intron (NR_146894, intron 15 of 32) intron (NR_146894, intron 15 of 32) 85264 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 139.5-56 chr22 48297746 48297997 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 23507 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 128.25-85 chr8 127205995 127206279 + 0.75 NA Intergenic (ATGTGT)n|Simple_repeat|Simple_repeat -8510 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 115.5-57 chr3 30701123 30701386 + 0.75 NA Intergenic Intergenic 94653 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 121-32 chr19 35611069 35611280 + 0.75 NA Intergenic L1MEc|LINE|L1 -1561 NM_015302 23354 Hs.7426 NM_015302 ENSG00000249115 HAUS5 KIAA0841|dgt5 HAUS augmin like complex subunit 5 protein-coding 137.75-52 chr3 30374754 30375020 + 0.75 NA Intergenic Intergenic -143981 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 200.5-56 chr6 118141010 118141334 + 0.75 NA intron (NM_001029858, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 55269 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 135-10 chr10 35722892 35723196 + 0.75 NA Intergenic Intergenic -55258 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 117.25-24 chr12 120457063 120457327 + 0.75 NA intron (NM_176818, intron 3 of 3) intron (NM_176818, intron 3 of 3) 10751 NR_033684 283459 Hs.706889 NM_176818 ENSG00000257218 GATC 15E1.2 glutamyl-tRNA amidotransferase subunit C protein-coding 157.75-33 chr17 15300914 15301260 + 0.75 NA Intergenic Intergenic -35761 NM_001281456 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 128-5 chr10 86672403 86672694 + 0.75 NA intron (NM_001368066, intron 2 of 14) intron (NM_001368066, intron 2 of 14) 3984 NM_001080116 11155 Hs.657271 NM_007078 ENSG00000122367 LDB3 CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 147.75-29 chr16 4080940 4081224 + 0.75 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 35360 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 147-72 chr7 4926577 4926864 + 0.75 NA intron (NR_072989, intron 1 of 8) L1ME3|LINE|L1 32467 NR_072989 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 147.25-53 chr5 87231137 87231361 + 0.75 NA intron (NR_130914, intron 2 of 2) AluJb|SINE|Alu 7952 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 145.25-89 chrX 113055758 113055951 + 0.75 NA intron (NR_110399, intron 1 of 3) intron (NR_110399, intron 1 of 3) 13127 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 226.75 chr1 68437620 68437947 + 0.75 NA intron (NM_000329, intron 10 of 13) intron (NM_000329, intron 10 of 13) 12171 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 137-16 chr12 680966 681313 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -17694 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 113-34 chr17 13562834 13563127 + 0.75 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) -19334 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 204.25-52 chr7 127613850 127614244 + 0.75 NA intron (NM_001366111, intron 4 of 9) intron (NM_001366111, intron 4 of 9) 1980 NM_001366111 5078 Hs.129706 NM_006193 ENSG00000106331 PAX4 KPD|MODY9 paired box 4 protein-coding 162.5-95 chr8 137365449 137365719 + 0.75 NA Intergenic MIRb|SINE|MIR 48004 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 133.25-84 chr8 121296649 121296918 + 0.75 NA Intergenic LTR33|LTR|ERVL -342563 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 173-30 chr2 231063056 231063313 + 0.75 NA intron (NM_001191037, intron 4 of 23) intron (NM_001191037, intron 4 of 23) 6317 NM_002807 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 257.75 chr1 49154479 49155120 + 0.75 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -102612 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 154-35 chr2 23833009 23833317 + 0.75 NA intron (NR_125717, intron 14 of 28) intron (NR_125717, intron 14 of 28) 93960 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 114-59 chr3 172208317 172208604 + 0.75 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 167929 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 113.25-72 chr2 72337825 72338056 + 0.75 NA intron (NR_135774, intron 17 of 19) intron (NR_135774, intron 17 of 19) -190078 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 212.5-51 chr7 49917741 49918120 + 0.75 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 142597 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 176.5-20 chr12 59877160 59877553 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR 187986 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 159.25-40 chr20 33344266 33344678 + 0.75 NA Intergenic Intergenic 57047 NM_016408 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 114-26 chr12 125174791 125174982 + 0.75 NA Intergenic Intergenic -11500 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 137-67 chr8 88300871 88301087 + 0.75 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 26504 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 185.25-11 chr11 113956769 113957058 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -18162 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 148.75-48 chr4 84971981 84972250 + 0.75 NA intron (NR_152782, intron 2 of 3) Ricksha_c|DNA|MULE-MuDR 4631 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 148-50 chr4 146407783 146408046 + 0.75 NA promoter-TSS (NR_107003) promoter-TSS (NR_107003) -669 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 172.5-69 chr6 36521828 36522373 + 0.75 NA intron (NM_007271, intron 4 of 13) intron (NM_007271, intron 4 of 13) 25379 NM_001305102 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 185.25-43 chr5 29035992 29036382 + 0.75 NA Intergenic Intergenic -29057 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 182-11 chr13 61415583 61415853 + 0.75 NA promoter-TSS (NM_022843) promoter-TSS (NM_022843) -196 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 176.25-67 chr7 89578072 89578478 + 0.75 NA Intergenic L1PREC2|LINE|L1 -541125 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 161.5-60 chr3 116817525 116817943 + 0.75 NA Intergenic Intergenic 32633 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 149.25-41 chr3 64710414 64710737 + 0.75 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -22575 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 197-2 chr1 113781221 113781602 + 0.75 NA intron (NM_018364, intron 2 of 6) L2a|LINE|L2 -21523 NM_001323042 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 184.5-6 chr1 236126719 236127045 + 0.75 NA Intergenic AluSz|SINE|Alu -15657 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 122.25-8 chr10 55940257 55940455 + 0.75 NA Intergenic Intergenic -312414 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 153-55 chrX 97749853 97750150 + 0.75 NA Intergenic LTR48B|LTR|ERV1 -185466 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 162.75-24 chr16 25528658 25528891 + 0.75 NA Intergenic Intergenic -163185 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 172-18 chr16 83414466 83414783 + 0.75 NA intron (NM_001220489, intron 5 of 12) L1MB1|LINE|L1 -93722 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 174.25-29 chr18 4655607 4656005 + 0.75 NA Intergenic Intergenic -200499 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 161-12 chr11 773540 773951 + 0.75 NA intron (NR_134868, intron 3 of 7) intron (NR_134868, intron 3 of 7) 3742 NM_001318823 347862 Hs.218362 NM_182612 ENSG00000177225 GATD1 PDDC1 glutamine amidotransferase like class 1 domain containing 1 protein-coding 117.5-87 chr7 41524136 41524354 + 0.75 NA Intergenic MER11C|LTR|ERVK -169674 NR_027118 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 195-33 chr21 30225414 30225769 + 0.75 NA Intergenic Intergenic -9494 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 152.75-11 chr12 63876337 63876613 + 0.75 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 31775 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 236.25 chr1 69413094 69413726 + 0.75 NA Intergenic MamTip2|DNA|hAT-Tip100 -19845 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 131.5-59 chr3 113617242 113617455 + 0.75 NA intron (NR_136285, intron 16 of 20) MIR3|SINE|MIR 22472 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 199.5-62 chrX 18963148 18963539 + 0.75 NA intron (NM_000292, intron 1 of 32) MLT1K|LTR|ERVL-MaLR 20771 NM_000292 5256 Hs.54941 NM_000292 ENSG00000044446 PHKA2 GSD9A|PHK|PYK|PYKL|XLG|XLG2 phosphorylase kinase regulatory subunit alpha 2 protein-coding 140.25-2 chr1 77228269 77228519 + 0.75 NA Intergenic AluSx1|SINE|Alu -8964 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 128-37 chr3 100051028 100051278 + 0.75 NA intron (NM_001042459, intron 1 of 4) Charlie15b|DNA|hAT-Charlie 63360 NM_182909 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 168.25-26 chr18 6397492 6397761 + 0.75 NA intron (NM_001365765, intron 1 of 18) AluJr|SINE|Alu 17285 NR_158609 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 199.25-36 chr6 132858064 132858410 + 0.75 NA Intergenic Intergenic 41018 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 177-34 chr20 42369343 42369632 + 0.75 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -315996 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 176.5-19 chr12 26859931 26860295 + 0.75 NA Intergenic AluJb|SINE|Alu -26919 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 164.5-37 chr2 50643212 50643541 + 0.75 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 52886 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 124.5-44 chr18 12095195 12095425 + 0.75 NA intron (NM_001277333, intron 2 of 13) intron (NM_001277333, intron 2 of 13) 1467 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 113.25-5 chr1 90157205 90157480 + 0.75 NA Intergenic Intergenic 162232 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 117.25-35 chr17 64081381 64081642 + 0.75 NA intron (NM_001433, intron 2 of 21) intron (NM_001433, intron 2 of 21) 48633 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 142.5-100 chr8 133494483 133494778 + 0.75 NA intron (NM_003033, intron 3 of 8) L2a|LINE|L2 77257 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 186.5-49 chr5 105990962 105991348 + 0.75 NA Intergenic Intergenic 891681 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 159-43 chr22 17871678 17872047 + 0.75 NA exon (NM_001136004, exon 20 of 22) exon (NM_001136004, exon 20 of 22) 35024 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 126.75-68 chr4 108593620 108593976 + 0.75 NA intron (NR_026968, intron 1 of 3) AluJo|SINE|Alu 26659 NR_026968 285456 Hs.683863 NM_182591 ENSG00000234492 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 198.5-53 chr7 92419292 92419626 + 0.75 NA intron (NR_145992, intron 7 of 9) MER33|DNA|hAT-Charlie 17855 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 128.75 chr1 53257743 53257969 + 0.75 NA intron (NM_004631, intron 14 of 18) Tigger13a|DNA|TcMar-Tigger 19246 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 113.5-44 chr15 76676350 76676631 + 0.75 NA intron (NR_148227, intron 20 of 32) intron (NR_148227, intron 20 of 32) 89843 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 126.5-19 chr11 21169285 21169638 + 0.75 NA intron (NM_201551, intron 13 of 18) L4_A_Mam|LINE|RTE-X 499875 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 188-48 chr9 19644759 19645131 + 0.75 NA intron (NM_020344, intron 1 of 9) intron (NM_020344, intron 1 of 9) 142074 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 125.25-21 chr14 48455377 48455691 + 0.75 NA Intergenic L1MC2|LINE|L1 -660520 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 131-60 chr6 57297664 57297997 + 0.75 NA Intergenic L1MC4a|LINE|L1 -16975 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 152-37 chr20 56706956 56707242 + 0.75 NA Intergenic Intergenic 77793 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 186-17 chr14 85712740 85713035 + 0.75 NA Intergenic Intergenic 179538 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 183.25-46 chr6 132878112 132878541 + 0.75 NA Intergenic Intergenic 61107 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 161.5-13 chr10 71156806 71157091 + 0.75 NA Intergenic Intergenic -55622 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 113.25 chr1 55768730 55768997 + 0.75 NA Intergenic L2|LINE|L2 176100 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 117-23 chr14 47125449 47125776 + 0.75 NA intron (NM_001113498, intron 5 of 16) A-rich|Low_complexity|Low_complexity 217634 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 135-31 chr17 71318867 71319169 + 0.75 NA Intergenic L1MC1|LINE|L1 -116839 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 164.75-9 chr10 52924057 52924410 + 0.75 NA Intergenic Intergenic -152533 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 119.25 chr1 40810955 40811262 + 0.75 NA intron (NM_004700, intron 1 of 13) MIRb|SINE|MIR 27321 NM_172163 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 150.5-80 chr6 55565091 55565363 + 0.75 NA intron (NM_001287746, intron 1 of 9) MIRb|SINE|MIR 13987 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 217.75-37 chr7 44834274 44834581 + 0.75 NA 3' UTR (NM_201517, exon 4 of 4) 3' UTR (NM_201517, exon 4 of 4) 13699 NM_138635 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 168.25-30 chr2 17758696 17759016 + 0.75 NA intron (NM_001130009, intron 1 of 13) AluSx|SINE|Alu 4718 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 133.25-47 chr2 170530051 170530340 + 0.75 NA intron (NR_045682, intron 31 of 35) intron (NR_045682, intron 31 of 35) -179252 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 197-10 chr12 56815033 56815337 + 0.75 NA Intergenic AluJb|SINE|Alu 51861 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 129.5-68 chr3 186568949 186569178 + 0.75 NA intron (NM_001134415, intron 1 of 7) L2b|LINE|L2 1255 NM_001286749 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 187.5-21 chr14 26129947 26130413 + 0.75 NA Intergenic Intergenic 423250 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 325.25-11 chr5 118606260 118606863 + 0.75 NA intron (NR_104998, intron 1 of 4) intron (NR_104998, intron 1 of 4) 10373 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 133.5-76 chr4 42714002 42714290 + 0.75 NA Intergenic Intergenic -57041 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 121-54 chr5 1945972 1946169 + 0.75 NA Intergenic L2c|LINE|L2 58739 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 185.75-43 chr3 122806561 122807076 + 0.75 NA intron (NM_032839, intron 1 of 8) intron (NM_032839, intron 1 of 8) 11749 NM_032839 84925 Hs.477346 NM_032839 ENSG00000138463 SLC49A4 DIRC2|RCC4 solute carrier family 49 member 4 protein-coding 198.25-13 chr14 88107451 88107750 + 0.75 NA Intergenic MER63D|DNA|hAT-Blackjack -81288 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 181.75 chr1 45368896 45369352 + 0.75 NA intron (NM_007170, intron 4 of 10) MIRb|SINE|MIR -28654 NR_146882 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 154.25-70 chr9 95046471 95046710 + 0.75 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -18760 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 122-73 chr8 121904842 121905101 + 0.75 NA Intergenic Intergenic -263531 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 164-54 chr6 166394671 166394921 + 0.75 NA Intergenic Intergenic -11783 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 131.75-53 chr3 69604723 69605067 + 0.75 NA Intergenic Intergenic -134569 NM_198159 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 127.25-63 chr3 85551616 85551915 + 0.75 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 46706 NM_001256503 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 137.75-83 chr8 19575220 19575525 + 0.75 NA intron (NM_001354495, intron 2 of 9) L1MC5a|LINE|L1 27173 NM_001354492 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 155-52 chr6 140927469 140927790 + 0.75 NA Intergenic Intergenic 243815 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 146.25-42 chr2 209193584 209193968 + 0.75 NA Intergenic L2a|LINE|L2 -230271 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 161-6 chr1 242769491 242769829 + 0.75 NA Intergenic Intergenic -244963 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 186-54 chr8 118679429 118679707 + 0.75 NA intron (NR_038210, intron 3 of 4) L1MC3|LINE|L1 -57605 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 140-39 chr20 45014961 45015288 + 0.75 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 48612 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 182-38 chr4 126934470 126934929 + 0.75 NA Intergenic Intergenic -698258 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 131.25-38 chr17 76556582 76556894 + 0.75 NA Intergenic Intergenic -1026 NR_038109 100507246 Hs.288215 NR_038108 ENSG00000163597 SNHG16 Nbla10727|Nbla12061|ncRAN small nucleolar RNA host gene 16 ncRNA 172.25-13 chr12 29265831 29266276 + 0.75 NA intron (NM_001271784, intron 1 of 10) L1MA3|LINE|L1 42387 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 206-21 chr3 36919371 36919679 + 0.75 NA intron (NM_001329998, intron 1 of 23) L1ME3|LINE|L1 25529 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 143.75-54 chr20 63036668 63037019 + 0.75 NA non-coding (NR_028295, exon 1 of 4) non-coding (NR_028295, exon 1 of 4) 185 NR_028295 100144596 Hs.187773 NM_022099 LINC00029 C20orf51|NCRNA00029 long intergenic non-protein coding RNA 29 ncRNA 138.5-20 chr11 126290323 126290570 + 0.75 NA intron (NM_148910, intron 2 of 4) intron (NM_148910, intron 2 of 4) 7359 NM_001039661 114609 Hs.537126 NM_052887 ENSG00000150455 TIRAP BACTS1|Mal|MyD88-2|wyatt TIR domain containing adaptor protein protein-coding 118.75-39 chr16 89187628 89187864 + 0.75 NA intron (NM_004933, intron 6 of 13) intron (NM_004933, intron 6 of 13) 12791 NM_001366322 146429 Hs.447544 NM_001242757 ENSG00000259803 SLC22A31 - solute carrier family 22 member 31 protein-coding 178.25-31 chr20 36279901 36280269 + 0.75 NA Intergenic MLT1G3|LTR|ERVL-MaLR -26254 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 150.75-34 chr2 96983600 96983920 + 0.75 NA intron (NM_001122646, intron 1 of 16) L1ME3|LINE|L1 2820 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 135.75-112 chr9 99720954 99721288 + 0.75 NA intron (NR_109802, intron 2 of 6) L1ME2|LINE|L1 98768 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 151-60 chr6 111957598 111958010 + 0.75 NA Intergenic MER20B|DNA|hAT-Charlie -48407 NR_149099 105377946 NR_149099 LINC02527 - long intergenic non-protein coding RNA 2527 ncRNA 184.5-50 chr3 2331180 2331480 + 0.75 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 92501 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 159.25-13 chr11 100196752 100196999 + 0.75 NA intron (NM_001243270, intron 14 of 23) intron (NM_001243270, intron 14 of 23) -490413 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 125.75-13 chr11 28828874 28829170 + 0.75 NA Intergenic Intergenic -351474 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 139.75-42 chr2 103421955 103422297 + 0.75 NA Intergenic MIR|SINE|MIR -437697 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 124.25-36 chr16 8422393 8422697 + 0.75 NA Intergenic Intergenic 167293 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 195-6 chr10 43036175 43036560 + 0.75 NA Intergenic Intergenic 38804 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 136 chr1 62308678 62308987 + 0.75 NA intron (NM_181712, intron 1 of 9) intron (NM_181712, intron 1 of 9) 10602 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 181.75-19 chr20 37926091 37926492 + 0.75 NA intron (NM_080607, intron 1 of 3) AluSq|SINE|Alu 23164 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 144.75-93 chr9 96739140 96739486 + 0.75 NA Intergenic Intergenic 13492 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 181.25-28 chr2 52996029 52996432 + 0.75 NA Intergenic L2c|LINE|L2 -293615 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 156.25-36 chr2 56830131 56830472 + 0.75 NA Intergenic AluSx|SINE|Alu -644531 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 210.25-10 chr11 42298896 42299296 + 0.75 NA Intergenic L1MC2|LINE|L1 -45406 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 142.5-12 chr10 57292187 57292608 + 0.75 NA Intergenic Intergenic 12162 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 116.25-48 chr2 106948148 106948466 + 0.75 NA Intergenic MLT1A1|LTR|ERVL-MaLR -61198 NM_001142352 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 290-11 chr3 82096146 82096829 + 0.75 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 110345 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 138.75-75 chr8 86430692 86430970 + 0.75 NA intron (NM_007013, intron 12 of 24) (AT)n|Simple_repeat|Simple_repeat 77855 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 113.5-9 chr1 173469584 173469748 + 0.75 NA intron (NR_037845, intron 1 of 2) intron (NR_037845, intron 1 of 2) 7489 NR_037845 100506023 Hs.731284 NR_037845 LOC100506023 - uncharacterized LOC100506023 ncRNA 117.75-27 chr15 100478847 100479188 + 0.75 NA intron (NM_001290341, intron 9 of 13) L1MEg|LINE|L1 65269 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 129.75-19 chr12 31678192 31678544 + 0.75 NA intron (NR_103522, intron 7 of 8) intron (NR_103522, intron 7 of 8) 18680 NM_001135863 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 161.5-37 chr15 98693844 98694107 + 0.75 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -42754 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 149-42 chr4 76386897 76387244 + 0.75 NA intron (NM_001042784, intron 3 of 23) L1MA2|LINE|L1 20235 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 161.25-71 chr6 43047647 43048023 + 0.75 NA intron (NM_014780, intron 9 of 25) L1MC5a|LINE|L1 6110 NM_014780 9820 Hs.520136 NM_014780 ENSG00000044090 CUL7 3M1|CUL-7|KIAA0076|dJ20C7.5 cullin 7 protein-coding 211-5 chr1 247944305 247944848 + 0.75 NA intron (NM_001304535, intron 1 of 1) L1PA10|LINE|L1 -4282 NM_001001963 391190 Hs.690212 NM_001001963 ENSG00000279263 OR2L8 - olfactory receptor family 2 subfamily L member 8 (gene/pseudogene) protein-coding 114.75-85 chr6 61067193 61067367 + 0.75 NA Intergenic Intergenic -506850 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 120.75-103 chr9 34103382 34103644 + 0.75 NA intron (NM_015397, intron 4 of 8) intron (NM_015397, intron 4 of 8) 23185 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 139-53 chr5 79216284 79216503 + 0.75 NA Intergenic LTR48B|LTR|ERV1 -19738 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 126.75-82 chr6 67567181 67567545 + 0.75 NA Intergenic Intergenic -487988 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 125.5-33 chr12 70621800 70622010 + 0.75 NA intron (NM_001109754, intron 3 of 33) intron (NM_001109754, intron 3 of 33) -11881 NM_001206971 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 116.25-2 chr1 41685303 41685648 + 0.75 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -200792 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 123.75-45 chr16 83114704 83114880 + 0.75 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -124494 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 151-42 chr3 121707801 121708101 + 0.75 NA intron (NM_001256486, intron 10 of 21) L1ME2z|LINE|L1 41790 NM_004487 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 136.5-18 chr11 84408871 84409116 + 0.75 NA intron (NM_001142699, intron 7 of 27) L2c|LINE|L2 -91654 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 131-46 chr4 80882917 80883203 + 0.75 NA intron (NM_152770, intron 4 of 5) L1M4|LINE|L1 -147648 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 195.5-41 chr2 26898494 26898949 + 0.75 NA exon (NM_001253724, exon 2 of 13) exon (NM_001253724, exon 2 of 13) 50297 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 134.25-62 chr4 90364525 90364835 + 0.75 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 129649 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 154-37 chr2 27378378 27378709 + 0.75 NA exon (NM_144631, exon 3 of 4) exon (NM_144631, exon 3 of 4) 1901 NM_001201459 130557 Hs.515872 NM_144631 ENSG00000163795 ZNF513 HMFT0656|RP58 zinc finger protein 513 protein-coding 143 chr1 38025411 38025736 + 0.75 NA TTS (NM_016037) TTS (NM_016037) 12839 NM_016037 51118 Hs.472038 NM_016037 ENSG00000183520 UTP11 CGI-94|CGI94|UTP11L UTP11 small subunit processome component protein-coding 130.25-28 chr14 73320315 73320571 + 0.75 NA intron (NM_001005743, intron 5 of 12) FLAM_A|SINE|Alu -74442 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 123.5-31 chr13 78217775 78217999 + 0.75 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 163032 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 144.25-47 chr22 17701419 17701760 + 0.75 NA intron (NM_001270727, intron 4 of 4) L1ME4b|LINE|L1 -5069 NM_001270733 23786 Hs.631672 NM_015367 ENSG00000099968 BCL2L13 BCL-RAMBO|Bcl2-L-13|MIL1 BCL2 like 13 protein-coding 155.25-14 chr12 102707449 102707731 + 0.75 NA Intergenic L2a|LINE|L2 116809 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 172-6 chr10 95315401 95315811 + 0.75 NA intron (NM_001034955, intron 30 of 30) intron (NM_001034955, intron 30 of 30) -24603 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 122.25-80 chr5 91419839 91420161 + 0.75 NA non-coding (NR_027435, exon 3 of 3) non-coding (NR_027435, exon 3 of 3) -36683 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 245.75-18 chr8 78920648 78921074 + 0.75 NA Intergenic Intergenic 83332 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 188.25-23 chr2 47210682 47211112 + 0.75 NA intron (NR_110208, intron 3 of 4) intron (NR_110208, intron 3 of 4) -33961 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 153.5-53 chr20 7821713 7822066 + 0.75 NA Intergenic Intergenic 118569 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 217.75-10 chr12 59251213 59251638 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie -330887 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 164.25-39 chr20 43162913 43163255 + 0.75 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 26822 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 240.75-11 chr14 66603790 66604379 + 0.75 NA intron (NM_001024218, intron 1 of 21) MIR|SINE|MIR 96677 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 155.75-64 chr6 170094552 170094937 + 0.75 NA Intergenic Intergenic -65898 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 144-61 chr5 131591651 131591871 + 0.75 NA intron (NM_016340, intron 4 of 27) MIR|SINE|MIR 43468 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 136.75-7 chr1 239794863 239795103 + 0.75 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -75864 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 243.5-29 chr8 140457129 140457731 + 0.75 NA intron (NM_031466, intron 1 of 22) CpG 314 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 150-64 chr5 146316657 146317116 + 0.75 NA Intergenic AluSx1|SINE|Alu -21953 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 189.25-16 chr16 84135423 84135761 + 0.75 NA 5' UTR (NM_001146051, exon 2 of 7) 5' UTR (NM_001146051, exon 2 of 7) 9585 NM_031463 83693 Hs.555992 NM_031463 ENSG00000103160 HSDL1 SDR12C3 hydroxysteroid dehydrogenase like 1 protein-coding 125.75-69 chr7 18090279 18090521 + 0.75 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) 3575 NM_001321869 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 143.75-36 chr14 68268189 68268487 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 360449 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 183.75-11 chr12 13353725 13354160 + 0.75 NA Intergenic L1MA10|LINE|L1 22803 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 145-60 chr7 38310328 38310680 + 0.75 NA Intergenic MIRb|SINE|MIR -31073 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 123-2 chr1 84950632 84950803 + 0.75 NA intron (NM_153259, intron 6 of 13) intron (NM_153259, intron 6 of 13) 46396 NM_153259 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 144.25-52 chr3 186436050 186436442 + 0.75 NA Intergenic L1MB5|LINE|L1 -4099 NR_151709 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 166.5-22 chr12 13856058 13856398 + 0.75 NA intron (NM_000834, intron 2 of 12) L2c|LINE|L2 124128 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 140.75 chr1 43570014 43570266 + 0.75 NA intron (NM_002840, intron 6 of 33) intron (NM_002840, intron 6 of 33) 39257 NM_002840 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 135.25-58 chr22 34220180 34220442 + 0.75 NA Intergenic Intergenic -297423 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 140-12 chr11 134189479 134189798 + 0.75 NA intron (NM_015261, intron 16 of 34) intron (NM_015261, intron 16 of 34) 34894 NM_015261 23310 Hs.438550 NM_015261 ENSG00000151503 NCAPD3 CAP-D3|CAPD3|MCPH22|hCAP-D3|hHCP-6|hcp-6 non-SMC condensin II complex subunit D3 protein-coding 120-45 chr2 30496496 30496723 + 0.75 NA intron (NM_001304445, intron 3 of 7) MIRc|SINE|MIR 49363 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 143.75-29 chr12 112226770 112227025 + 0.75 NA intron (NM_001109662, intron 43 of 75) intron (NM_001109662, intron 43 of 75) -63576 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 133.5-60 chr3 12589971 12590299 + 0.75 NA intron (NR_148942, intron 12 of 16) intron (NR_148942, intron 12 of 16) 33048 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 125-59 chr3 30858103 30858438 + 0.75 NA intron (NM_207359, intron 2 of 14) L2c|LINE|L2 36391 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 191.25-59 chr8 117927106 117927539 + 0.75 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -6409 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 141.25-29 chr14 24825615 24825860 + 0.75 NA intron (NM_001351943, intron 5 of 6) intron (NM_001351943, intron 5 of 6) -191547 NM_001346011 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 116.75-4 chr1 190644322 190644544 + 0.75 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 19543 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 147-52 chr22 44450706 44451140 + 0.75 NA Intergenic MIR|SINE|MIR 7596 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 148.75-30 chr19 56931105 56931485 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 90393 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 166.25-8 chr11 24162340 24162633 + 0.75 NA Intergenic Intergenic -334567 NM_001009909 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 204.5-12 chr12 82176319 82176697 + 0.75 NA Intergenic MIRc|SINE|MIR 181879 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 194.5-2 chr1 65939229 65939762 + 0.75 NA intron (NM_002600, intron 3 of 16) MLT1J|LTR|ERVL-MaLR 26250 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 150.25-50 chr3 59077872 59078105 + 0.75 NA Intergenic Intergenic -27956 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 173-16 chr14 45863144 45863533 + 0.75 NA Intergenic L1MA7|LINE|L1 -147736 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 127.5-76 chr3 25605551 25605938 + 0.75 NA intron (NM_001330700, intron 32 of 35) intron (NM_001330700, intron 32 of 35) 58628 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 147.75-88 chr9 32626617 32626841 + 0.75 NA Intergenic L2b|LINE|L2 8940 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 132.75-14 chr10 6389713 6389971 + 0.75 NA Intergenic HAL1|LINE|L1 39526 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 115.25-93 chr8 103346415 103346741 + 0.75 NA Intergenic L2b|LINE|L2 -24960 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 113.5-65 chr2 201707725 201708067 + 0.75 NA exon (NM_020919, exon 28 of 34) exon (NM_020919, exon 28 of 34) -9252 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 127.25-37 chr16 71422805 71423017 + 0.75 NA intron (NR_146574, intron 1 of 2) intron (NR_146574, intron 1 of 2) 3553 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 133.5-13 chr10 51068895 51069185 + 0.75 NA promoter-TSS (NR_120678) promoter-TSS (NR_120678) -488 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 167.75-59 chr6 1200767 1201013 + 0.75 NA Intergenic Intergenic -99558 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 136.75-73 chr4 46280845 46281112 + 0.75 NA intron (NM_001114175, intron 7 of 8) MLT1A|LTR|ERVL-MaLR 108401 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 145.25-20 chr12 11733669 11733936 + 0.75 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 83948 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 116.75-23 chr14 43625335 43625533 + 0.75 NA Intergenic Intergenic 881849 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 238-23 chr22 23524545 23524985 + 0.75 NA Intergenic AluSx1|SINE|Alu -13337 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 113-99 chr8 54547480 54547697 + 0.75 NA Intergenic L1PA13|LINE|L1 -68508 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 117.75-51 chr3 15998946 15999353 + 0.75 NA Intergenic LTR16C|LTR|ERVL 125378 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 153-17 chr2 51840830 51841254 + 0.75 NA intron (NR_135237, intron 6 of 10) L1M3de|LINE|L1 -529606 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 152.75-31 chr2 104277381 104277782 + 0.75 NA Intergenic AluY|SINE|Alu 130751 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 166.5-55 chr2 23184802 23185052 + 0.75 NA Intergenic AluSx|SINE|Alu -200252 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 185.25-32 chr3 3033050 3033372 + 0.75 NA intron (NM_175607, intron 16 of 24) intron (NM_175607, intron 16 of 24) 27934 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 140.5-17 chr12 64536868 64537085 + 0.75 NA Intergenic Intergenic -73519 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 137.75-9 chr10 78545936 78546300 + 0.75 NA Intergenic Intergenic 278776 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 193.75-17 chr18 3703562 3704102 + 0.75 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 100095 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 163-49 chr7 12200598 12200892 + 0.75 NA Intergenic Intergenic -10549 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 128.5-38 chr2 26078786 26079030 + 0.75 NA intron (NM_016131, intron 1 of 5) AluSx|SINE|Alu 44824 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 145.25-87 chr8 144604379 144604629 + 0.75 NA intron (NM_025251, intron 1 of 10) AluJo|SINE|Alu 1191 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 118-77 chr8 141941146 141941339 + 0.75 NA Intergenic Intergenic -154929 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 138.25-28 chr14 82117361 82117763 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -374424 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 126-8 chr10 72434478 72434691 + 0.75 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -79665 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 190.25-19 chr16 2372638 2373124 + 0.75 NA intron (NR_003574, intron 5 of 16) Tigger13a|DNA|TcMar-Tigger 31959 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 157-16 chr12 39053943 39054270 + 0.75 NA Intergenic L2|LINE|L2 -148515 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 140.25-70 chr5 107330161 107330393 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -319263 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 171-16 chr12 15103827 15104133 + 0.75 NA Intergenic L1ME1|LINE|L1 -47943 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 126.75-9 chr1 213094725 213094955 + 0.75 NA intron (NM_001349671, intron 4 of 12) MER90a|LTR|ERV1 43599 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 134.5-55 chr22 45498432 45498787 + 0.75 NA Intergenic LTR40c|LTR|ERVL -4274 NM_006485 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 133.75-3 chr1 99501982 99502268 + 0.75 NA Intergenic Intergenic -14321 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 207-40 chr4 72554296 72554595 + 0.75 NA intron (NM_014243, intron 2 of 21) intron (NM_014243, intron 2 of 21) 14776 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 162.75-34 chr2 30276904 30277181 + 0.75 NA Intergenic Intergenic 45508 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 207-31 chr20 42353938 42354453 + 0.75 NA intron (NM_133170, intron 9 of 31) L1ME3A|LINE|L1 -331288 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 119.5-93 chr5 9841489 9841673 + 0.75 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 -12796 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 137-58 chr5 96569884 96570157 + 0.75 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -92017 NM_001190442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 128.25-24 chr14 49464733 49465055 + 0.75 NA Intergenic L2c|LINE|L2 121486 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 187.25-47 chr4 175738785 175739101 + 0.75 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 48733 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 195.5-29 chr15 58891915 58892402 + 0.75 NA intron (NR_135042, intron 12 of 18) intron (NR_135042, intron 12 of 18) 41521 NM_001013843 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 190-18 chr18 41903829 41904317 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -51161 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 142.75-88 chr8 97897756 97898010 + 0.75 NA intron (NM_002380, intron 2 of 18) intron (NM_002380, intron 2 of 18) 28819 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 218.25-23 chr16 62831594 62831968 + 0.75 NA Intergenic Intergenic -795343 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 155.5-93 chr8 91386475 91386847 + 0.75 NA intron (NM_134266, intron 15 of 18) MER63A|DNA|hAT-Blackjack 137342 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 132-66 chr6 48921295 48921559 + 0.75 NA Intergenic L1ME2|LINE|L1 541826 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 193.5-73 chr8 5280178 5280495 + 0.75 NA Intergenic MER4D|LTR|ERV1 -285422 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 128.75-29 chr16 59929015 59929241 + 0.75 NA intron (NR_110917, intron 1 of 3) (TTG)n|Simple_repeat|Simple_repeat 73775 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 203.25-3 chr1 165764764 165765247 + 0.75 NA intron (NM_001256164, intron 2 of 6) L2b|LINE|L2 3863 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 275-11 chr3 156545110 156545812 + 0.75 NA intron (NM_007107, intron 3 of 4) intron (NM_007107, intron 3 of 4) 8664 NM_001308205 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 185.25-51 chr8 85432049 85432413 + 0.75 NA Intergenic Intergenic -6628 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 141-5 chr1 113737568 113737828 + 0.75 NA intron (NM_001323046, intron 3 of 15) AluJb|SINE|Alu 21457 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 269.25-22 chr7 89177437 89177978 + 0.75 NA intron (NM_181646, intron 1 of 3) L1MA3|LINE|L1 -381970 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 143.5-3 chr1 84819955 84820315 + 0.75 NA intron (NM_012152, intron 2 of 2) MIR|SINE|MIR 73071 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 151.75-31 chr15 66295450 66295777 + 0.75 NA intron (NM_001323948, intron 2 of 15) intron (NM_001323948, intron 2 of 15) 1798 NM_001323944 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 159-66 chr9 27145558 27145836 + 0.75 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 36556 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 158.5-69 chr3 45383856 45384217 + 0.75 NA Intergenic Intergenic -4540 NM_001368263 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 131.75-20 chr12 12831637 12831912 + 0.75 NA Intergenic Intergenic 18428 NM_201224 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 167.75-5 chr1 99578164 99578512 + 0.75 NA intron (NR_031666, intron 1 of 4) L1ME3Cz|LINE|L1 -67775 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 135.75-110 chr8 139320070 139320363 + 0.75 NA Intergenic L1PB2|LINE|L1 382907 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 151-8 chr12 19397741 19398020 + 0.75 NA Intergenic Intergenic -41612 NM_001363736 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 183-72 chr9 17247214 17247553 + 0.75 NA intron (NM_001365029, intron 5 of 25) L1M1|LINE|L1 112343 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 122.5-88 chr7 7476266 7476501 + 0.75 NA intron (NM_001037763, intron 14 of 34) MER58A|DNA|hAT-Charlie 59490 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 147-49 chr21 27390319 27390726 + 0.75 NA Intergenic Intergenic -331857 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 121.75-98 chr9 132824204 132824452 + 0.75 NA intron (NM_001317959, intron 10 of 14) intron (NM_001317959, intron 10 of 14) -54016 NR_133631 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 127.75-61 chr4 55658944 55659316 + 0.75 NA Intergenic Intergenic -22337 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 118.25-120 chr9 83366702 83366876 + 0.75 NA intron (NM_001244960, intron 3 of 13) intron (NM_001244960, intron 3 of 13) -34828 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 182.5-6 chr1 166389784 166390214 + 0.75 NA Intergenic L2b|LINE|L2 100040 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 147.75-10 chr10 115506174 115506453 + 0.75 NA intron (NM_207303, intron 24 of 28) MER4-int|LTR|ERV1 412948 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 136.25-37 chr17 2132318 2132560 + 0.75 NA intron (NM_001256827, intron 6 of 11) intron (NM_001256827, intron 6 of 11) -43678 NM_001282326 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 152-46 chr4 34107588 34107864 + 0.75 NA Intergenic Intergenic -67833 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 159.25-70 chr9 79213330 79213729 + 0.75 NA Intergenic MLT2D|LTR|ERVL -67863 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 145.25-11 chr10 15726539 15726791 + 0.75 NA Intergenic L2a|LINE|L2 -6330 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 161.25-12 chr10 93097252 93097580 + 0.75 NA Intergenic Intergenic 23523 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 141.25-21 chr12 13118796 13119124 + 0.75 NA Intergenic AluSx1|SINE|Alu -15293 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 261.5-4 chr11 16064287 16064788 + 0.75 NA intron (NM_017508, intron 8 of 14) L1MA2|LINE|L1 -94916 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 151-67 chr7 70851489 70851780 + 0.75 NA Intergenic Intergenic -280510 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 190-16 chr16 50061396 50061655 + 0.75 NA Intergenic Intergenic -4445 NM_001329730 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 141 chr1 35984398 35984630 + 0.75 NA intron (NM_024852, intron 5 of 18) L2c|LINE|L2 53409 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 119.5-35 chr14 63580192 63580473 + 0.75 NA Intergenic Intergenic -36937 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 113.5-101 chr5 131751365 131751541 + 0.75 NA intron (NM_133372, intron 1 of 17) L2c|LINE|L2 45564 NM_001346113 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 215.5-34 chr4 119494593 119495046 + 0.75 NA 3' UTR (NM_001083, exon 21 of 21) 3' UTR (NM_001083, exon 21 of 21) 40036 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 147.75-8 chr10 75277619 75278010 + 0.75 NA Intergenic L1M4|LINE|L1 -18569 NR_038226 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 153.25-58 chr8 125668958 125669162 + 0.75 NA Intergenic Intergenic 236851 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 121.75-23 chr15 60979539 60979891 + 0.75 NA intron (NM_134261, intron 1 of 10) L1MB7|LINE|L1 249587 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 142.75-25 chr14 20965217 20965448 + 0.75 NA Intergenic MER45A|DNA|hAT-Tip100 9845 NM_002934 6036 Hs.728 NM_002934 ENSG00000169385 RNASE2 EDN|RAF3|RNS2 ribonuclease A family member 2 protein-coding 160-19 chr2 97921763 97922003 + 0.75 NA intron (NM_015348, intron 2 of 40) L1ME3B|LINE|L1 74065 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 129.25-55 chr3 128151070 128151288 + 0.75 NA intron (NM_001319086, intron 1 of 9) (AT)n|Simple_repeat|Simple_repeat -2302 NM_021937 60678 Hs.477498 NM_021937 ENSG00000132394 EEFSEC EFSEC|SELB eukaryotic elongation factor, selenocysteine-tRNA specific protein-coding 126.5-101 chr6 50857630 50857827 + 0.75 NA Intergenic L1PA16|LINE|L1 38857 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 156.75-50 chr2 168441426 168441777 + 0.75 NA Intergenic Intergenic -14671 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 120-46 chr2 45884931 45885203 + 0.75 NA intron (NM_005400, intron 2 of 14) L1MC|LINE|L1 233392 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 248.75-6 chr15 37753131 37753647 + 0.75 NA Intergenic MSTD|LTR|ERVL-MaLR -181218 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 127.75-31 chr14 64726373 64726705 + 0.75 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 22115 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 126.25-84 chr7 65819735 65820005 + 0.75 NA Intergenic AluJo|SINE|Alu -49060 NR_038378 441242 Hs.373941 NM_001013464 ENSG00000272693 LOC441242 - uncharacterized LOC441242 ncRNA 135.75-43 chr2 54043268 54043484 + 0.75 NA intron (NM_001320587, intron 2 of 5) MER20B|DNA|hAT-Charlie -72239 NM_138448 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 118.5-64 chr21 30790337 30790540 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 22836 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 174.25-26 chr16 50248351 50248789 + 0.75 NA Intergenic Intergenic -17981 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 127.25-87 chr7 15830127 15830360 + 0.75 NA Intergenic Intergenic 141865 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 159.75-20 chr14 92861796 92862272 + 0.75 NA Intergenic Intergenic 45448 NR_135253 101929002 Hs.639356 NR_135253 ENSG00000258499 LINC02287 - long intergenic non-protein coding RNA 2287 ncRNA 116-38 chr2 74320702 74320910 + 0.75 NA intron (NM_133478, intron 5 of 30) HAL1|LINE|L1 -5781 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 113.75-32 chr14 27570301 27570531 + 0.75 NA intron (NR_148991, intron 2 of 2) THE1B|LTR|ERVL-MaLR -42172 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 118-79 chr9 105097179 105097424 + 0.75 NA Intergenic Intergenic -147304 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 150.5-85 chr7 33033078 33033349 + 0.75 NA intron (NM_001166118, intron 2 of 10) intron (NM_001166118, intron 2 of 10) 7693 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 116.5-13 chr10 83635786 83636084 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 41154 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 227-29 chr6 38013892 38014502 + 0.75 NA intron (NM_021943, intron 2 of 5) L1MC4|LINE|L1 194470 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 161.5-88 chr9 79268089 79268369 + 0.75 NA Intergenic Intergenic -122563 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 211.75-3 chr10 33811758 33812147 + 0.75 NA Intergenic Intergenic -39272 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 126-24 chr12 123991153 123991416 + 0.75 NA intron (NM_001204298, intron 3 of 4) intron (NM_001204298, intron 3 of 4) 18069 NM_001347902 100533183 Hs.524828 NM_001204299 ENSG00000178882 ZNF664-RFLNA - ZNF664-RFLNA readthrough protein-coding 138.75-39 chr2 148493538 148493750 + 0.75 NA intron (NM_018328, intron 12 of 14) intron (NM_018328, intron 12 of 14) -151107 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 135.75-77 chr5 96381871 96382255 + 0.75 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) 50096 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 160-46 chr8 126547759 126548073 + 0.75 NA Intergenic Intergenic 10562 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 138.5-11 chr1 233730984 233731168 + 0.75 NA Intergenic MER61-int|LTR|ERV1 106924 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 115.75-23 chr14 67046500 67046891 + 0.75 NA intron (NM_001024218, intron 9 of 21) intron (NM_001024218, intron 9 of 21) -142745 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 148-51 chr4 147460983 147461235 + 0.75 NA Intergenic Intergenic -19808 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 165-38 chr3 53730561 53730994 + 0.75 NA intron (NM_001128840, intron 16 of 47) intron (NM_001128840, intron 16 of 47) 115642 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 202-6 chr12 100444888 100445376 + 0.75 NA Intergenic L1MC4a|LINE|L1 -28734 NM_001206978 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 159.5-83 chr9 104369790 104370089 + 0.75 NA Intergenic Intergenic 99710 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 129.75-53 chr3 44302748 44302976 + 0.75 NA intron (NM_001145030, intron 12 of 19) AluJb|SINE|Alu -35257 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 124.5-59 chr2 139984647 139984908 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 601908 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 133.25-79 chr7 112538140 112538398 + 0.75 NA Intergenic Intergenic 57278 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 115-60 chr4 85802220 85802433 + 0.75 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) 23528 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 173.75-19 chr19 39639342 39639803 + 0.75 NA non-coding (NR_026870, exon 1 of 4) non-coding (NR_026870, exon 1 of 4) 887 NR_026870 100129935 Hs.659307 NR_026870 ENSG00000268153 LOC100129935 - galectin 14 pseudogene pseudo 141.5-117 chr8 140127746 140128071 + 0.75 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -27373 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 114.75-56 chr20 59494437 59494683 + 0.75 NA Intergenic Intergenic -82949 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 135.25-91 chr8 49414438 49414670 + 0.75 NA Intergenic L2a|LINE|L2 97626 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 166.25-37 chr22 46341692 46342105 + 0.75 NA intron (NR_104241, intron 2 of 9) intron (NR_104241, intron 2 of 9) 6184 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 234.75-23 chr2 186758705 186759127 + 0.75 NA intron (NM_177454, intron 6 of 7) L1MA3|LINE|L1 64856 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 120.75-20 chr11 128835222 128835411 + 0.75 NA TTS (NM_000220) TTS (NM_000220) 7153 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 162.25-32 chr4 74358129 74358345 + 0.75 NA Intergenic Intergenic -6908 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 178.5-77 chr7 77181959 77182270 + 0.75 NA intron (NM_020879, intron 2 of 18) intron (NM_020879, intron 2 of 18) 17705 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 164-50 chr5 154805625 154806047 + 0.75 NA intron (NM_001367714, intron 15 of 19) intron (NM_001367714, intron 15 of 19) -23622 NR_039667 100616306 NR_039667 ENSG00000263361 MIR378H - microRNA 378h ncRNA 122-18 chr13 75140802 75141113 + 0.75 NA Intergenic L1ME4a|LINE|L1 99424 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 179-44 chr4 160729823 160730136 + 0.75 NA Intergenic Intergenic -952195 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 212.75-12 chr17 69344037 69344371 + 0.75 NA Intergenic Intergenic -17071 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 222.5-23 chr18 8000617 8000992 + 0.75 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 366230 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 158-49 chr4 139770094 139770359 + 0.75 NA intron (NM_018717, intron 2 of 4) AluJo|SINE|Alu 104407 NM_002413 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 170.25-11 chr12 43828767 43829229 + 0.75 NA Intergenic FLAM_A|SINE|Alu -6863 NM_001286211 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 204-26 chr20 10213184 10213492 + 0.75 NA intron (NR_040710, intron 1 of 4) intron (NR_040710, intron 1 of 4) -5460 NM_001322904 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 157-55 chr5 125075917 125076236 + 0.75 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 39245 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 176.75-34 chr3 195328106 195328409 + 0.75 NA intron (NM_012287, intron 8 of 22) intron (NM_012287, intron 8 of 22) -57098 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 258.25-9 chr17 33144093 33144636 + 0.75 NA intron (NM_001094, intron 1 of 9) GA-rich|Low_complexity|Low_complexity 148624 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 155.25-31 chr2 17865204 17865440 + 0.75 NA Intergenic Intergenic -12525 NM_001282428 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 149.75-37 chr22 34092714 34093093 + 0.75 NA Intergenic AluJr|SINE|Alu -170015 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 154.75-62 chr7 94564884 94565257 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 55261 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 118-5 chr1 183110419 183110625 + 0.75 NA exon (NM_002293, exon 4 of 28) exon (NM_002293, exon 4 of 28) 30748 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 153.75-76 chr7 46399259 46399537 + 0.75 NA Intergenic Intergenic 297724 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 193.25-52 chrX 44414032 44414428 + 0.75 NA Intergenic L1M1|LINE|L1 -70558 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 149.75-68 chr8 125121571 125121921 + 0.75 NA intron (NM_001349486, intron 3 of 7) MIR|SINE|MIR 29886 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 117.75-82 chr9 27267586 27267922 + 0.75 NA intron (NR_026679, intron 10 of 16) intron (NR_026679, intron 10 of 16) 15039 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 119.5-64 chr2 197802368 197802548 + 0.75 NA Intergenic Intergenic -2135 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 188-27 chr3 196734848 196735389 + 0.75 NA 3' UTR (NM_001166304, exon 7 of 7) 3' UTR (NM_001166304, exon 7 of 7) -4739 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 135-47 chr3 2733020 2733298 + 0.75 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -159056 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 134.25-47 chr21 30648626 30648971 + 0.75 NA Intergenic Intergenic 5934 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 140.75-74 chrX 80690789 80691152 + 0.75 NA intron (NM_153252, intron 31 of 40) intron (NM_153252, intron 31 of 40) 118907 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 218.75-39 chr8 79963479 79964073 + 0.75 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 66483 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 189.75-29 chr3 6506751 6507206 + 0.75 NA Intergenic Intergenic 298471 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 217.75-38 chr7 104325199 104325569 + 0.75 NA Intergenic Intergenic -3272 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 137.75-51 chr22 39666319 39666657 + 0.75 NA intron (NM_001003406, intron 22 of 35) intron (NM_001003406, intron 22 of 35) 95735 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 155.5-50 chr2 4203783 4204043 + 0.75 NA Intergenic Intergenic 229752 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 210-3 chr11 6167670 6168253 + 0.75 NA Intergenic Intergenic 2365 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 235.5-32 chr3 15229656 15230109 + 0.75 NA intron (NM_014296, intron 8 of 20) intron (NM_014296, intron 8 of 20) 23636 NM_014296 23473 Hs.595234 NM_014296 ENSG00000131375 CAPN7 CALPAIN7|PALBH calpain 7 protein-coding 129-7 chr1 237067012 237067283 + 0.75 NA intron (NM_001035, intron 1 of 104) L1MD2|LINE|L1 24963 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 128.75-55 chr3 8871954 8872213 + 0.75 NA Intergenic LTR78|LTR|ERV1 91389 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 143.75-5 chr1 97663843 97664100 + 0.75 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -132950 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 221.5-44 chr7 46373095 46373432 + 0.75 NA Intergenic L1MA3|LINE|L1 323859 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 138-20 chr14 36337847 36338161 + 0.75 NA Intergenic Intergenic -17328 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 133.5-39 chr15 95762828 95763102 + 0.75 NA Intergenic Intergenic 329872 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 164.25-34 chr2 147288627 147289001 + 0.75 NA Intergenic L2b|LINE|L2 -555703 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 129-29 chr17 35081578 35081781 + 0.75 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 7547 NR_037713 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 218.75-31 chr5 96860178 96860582 + 0.75 NA Intergenic Intergenic -15559 NM_001329229 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 132-27 chr17 32594307 32594634 + 0.75 NA 3' UTR (NM_001303279, exon 22 of 22) 3' UTR (NM_001303279, exon 22 of 22) 107477 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 177.5-25 chr17 61287050 61287360 + 0.75 NA intron (NM_001330413, intron 23 of 25) AluY|SINE|Alu 80499 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 173.25-50 chr4 76553887 76554264 + 0.75 NA intron (NM_020859, intron 1 of 10) L1MC1|LINE|L1 -19493 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 147.75-79 chr8 59835414 59835790 + 0.75 NA Intergenic Intergenic 445798 NM_001321837 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 119.75-58 chr3 192202209 192202400 + 0.75 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -36326 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 173.25-67 chr8 105002560 105002956 + 0.75 NA Intergenic Intergenic -315680 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 165-27 chr19 51717249 51717620 + 0.75 NA intron (NM_001297436, intron 2 of 4) MLT1F1|LTR|ERVL-MaLR 6557 NM_001523 3036 Hs.57697 NM_001523 ENSG00000105509 HAS1 HAS hyaluronan synthase 1 protein-coding 180.25-42 chr3 105061027 105061321 + 0.75 NA Intergenic Intergenic -305539 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 214-45 chrUn_KI270337v1 22 591 + 0.75 NA NA SAR|Satellite|Satellite NA NA 125.5-78 chr3 42172656 42172908 + 0.75 NA intron (NM_014965, intron 1 of 12) intron (NM_014965, intron 1 of 12) 12589 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 182.75-21 chr20 42319315 42319679 + 0.75 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -365986 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 189.75-9 chr11 118968041 118968367 + 0.75 NA Intergenic L1PA13|LINE|L1 -3557 NM_181721 283150 Hs.116679 NM_181721 ENSG00000176302 FOXR1 DLNB13|FOXN5 forkhead box R1 protein-coding 118-17 chr11 113070924 113071168 + 0.75 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -107586 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 136.5-8 chr1 229954142 229954486 + 0.75 NA Intergenic Intergenic -48403 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 149-21 chr16 77200783 77201211 + 0.75 NA 3' UTR (NM_001286639, exon 5 of 5) 3' UTR (NM_001286639, exon 5 of 5) 1589 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 173-17 chr14 63699883 63700216 + 0.75 NA intron (NM_030791, intron 1 of 2).2 AluJb|SINE|Alu 28016 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 126.5-43 chr17 61571437 61571833 + 0.75 NA Intergenic Intergenic 19584 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 118.75-56 chr2 153494240 153494454 + 0.75 NA Intergenic L1M5|LINE|L1 -15585 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 189.5-64 chr7 82105429 82105850 + 0.75 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 96462 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 209.75-37 chr6 52195111 52195467 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 8914 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 153.75-79 chr7 98416495 98416747 + 0.75 NA Intergenic AluSz|SINE|Alu -15531 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 182.5-78 chrX 115068430 115068756 + 0.75 NA Intergenic Intergenic -50977 NM_000640 3598 Hs.336046 NM_000640 ENSG00000123496 IL13RA2 CD213A2|CT19|IL-13R|IL13BP interleukin 13 receptor subunit alpha 2 protein-coding 132.5-47 chr19 29952310 29952564 + 0.75 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 10198 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 135.75-10 chr1 227441233 227441433 + 0.75 NA Intergenic Intergenic -122223 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 140.25 chr1 68494528 68494852 + 0.75 NA exon (NM_017779, exon 2 of 11) exon (NM_017779, exon 2 of 11) -1986 NR_110671 101927220 Hs.382856 NR_110671 ENSG00000234264 DEPDC1-AS1 - DEPDC1 antisense RNA 1 ncRNA 118.25-13 chr11 4813029 4813231 + 0.75 NA Intergenic AluSx1|SINE|Alu -8191 NM_001004753 119694 Hs.553562 NM_001004753 ENSG00000176925 OR51F2 OR11-23 olfactory receptor family 51 subfamily F member 2 protein-coding 155-21 chr15 59162698 59162934 + 0.75 NA intron (NM_004998, intron 23 of 27) intron (NM_004998, intron 23 of 27) 8446 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 151.25-28 chr17 60427740 60428042 + 0.75 NA intron (NM_181707, intron 4 of 5) L1MC2|LINE|L1 5402 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 128-66 chr8 141241689 141242051 + 0.75 NA intron (NM_001286646, intron 1 of 7) intron (NM_001286646, intron 1 of 7) -12697 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 113-65 chr3 157409712 157409922 + 0.75 NA intron (NM_024621, intron 6 of 13) intron (NM_024621, intron 6 of 13) -27033 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 157-63 chrX 149464351 149464579 + 0.75 NA Intergenic L2b|LINE|L2 40841 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 180.75-27 chr15 26011367 26011850 + 0.75 NA intron (NR_040082, intron 1 of 4) AluSz6|SINE|Alu -104205 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 162.5-48 chr2 233701248 233701486 + 0.75 NA intron (NM_205862, intron 2 of 5) L1P1|LINE|L1 8477 NM_001072 54578 Hs.554822 NM_001072 ENSG00000167165 UGT1A6 GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT-1A|UGT-1C|UGT-1E|UGT1|UGT1-01|UGT1-03|UGT1-05|UGT1.1|UGT1.3|UGT1.5|UGT1A|UGT1A1|UGT1A3|UGT1A5|UGT1A6S|UGT1C|UGT1E|UGT1F|hUG-BR1 UDP glucuronosyltransferase family 1 member A6 protein-coding 179.25-5 chr1 227103373 227103691 + 0.75 NA intron (NM_001366019, intron 14 of 36) intron (NM_001366019, intron 14 of 36) 163238 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 178.75-23 chr17 54690385 54690823 + 0.75 NA Intergenic Intergenic -210087 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 148.75-36 chr2 153210062 153210432 + 0.75 NA Intergenic L1ME1|LINE|L1 268515 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 212.5-53 chr8 119542885 119543297 + 0.75 NA Intergenic Intergenic 49917 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 135.75-27 chr14 32471013 32471242 + 0.75 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 141829 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 117.75-85 chrX 43019920 43020169 + 0.75 NA Intergenic Intergenic -156950 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 125.5 chr1 12309782 12309979 + 0.75 NA intron (NM_015378, intron 27 of 69) intron (NM_015378, intron 27 of 69) 79850 NM_015378 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 141.5-86 chr5 18160934 18161245 + 0.75 NA Intergenic Intergenic 353815 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 137.25-6 chr1 202442125 202442416 + 0.75 NA intron (NM_002481, intron 11 of 23) intron (NM_002481, intron 11 of 23) -20444 NM_032103 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 138.75-3 chr1 53804755 53805121 + 0.75 NA intron (NR_033142, intron 8 of 16) L2c|LINE|L2 33358 NR_033142 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 138-77 chr7 75843933 75844232 + 0.75 NA Intergenic Intergenic -20710 NM_001371193 143.25-64 chr5 116152413 116152749 + 0.75 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 67119 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 172.5-26 chr18 28999067 28999441 + 0.75 NA Intergenic Intergenic -822124 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 127-75 chr5 14208169 14208452 + 0.75 NA intron (NM_007118, intron 1 of 56) L1ME1|LINE|L1 64968 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 167-65 chr8 55976502 55976805 + 0.75 NA intron (NM_002350, intron 10 of 12) intron (NM_002350, intron 10 of 12) -73798 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 150-32 chr18 11914065 11914405 + 0.75 NA Intergenic MLT1E|LTR|ERVL-MaLR -5918 NR_040242 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 172.25-30 chr19 31252995 31253305 + 0.75 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 85640 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 176.25-59 chr6 19432974 19433381 + 0.75 NA Intergenic Intergenic -16644 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 141.5-62 chr2 153081005 153081312 + 0.75 NA Intergenic Intergenic 362521 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 144-43 chr3 28598959 28599179 + 0.75 NA intron (NR_038840, intron 2 of 4) L1ME4a|LINE|L1 23791 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 171-41 chr3 191939039 191939563 + 0.75 NA Intergenic AluSq2|SINE|Alu -299329 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 180.75-52 chr5 150853812 150854098 + 0.75 NA intron (NM_001346557, intron 2 of 3) L1M4|LINE|L1 7432 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 203.75-17 chr18 1563075 1563574 + 0.75 NA Intergenic L1MEf|LINE|L1 -203695 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 121-50 chr3 193415552 193415774 + 0.75 NA intron (NM_032279, intron 25 of 29) L1M4|LINE|L1 -36910 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 201.5-70 chrX 19925646 19925978 + 0.75 NA intron (NM_001367774, intron 10 of 10) intron (NM_001367774, intron 10 of 10) -38212 NM_031892 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 117.25-36 chr18 60456409 60456677 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -83768 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 112.75-72 chr5 150927566 150927834 + 0.75 NA Intergenic L1M3b|LINE|L1 18884 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 138.25-84 chr8 82066611 82066803 + 0.75 NA Intergenic Intergenic -224421 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 156-26 chr12 133209246 133209495 + 0.75 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 26466 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 115.75-74 chr5 21027811 21028163 + 0.75 NA Intergenic Intergenic -412452 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 125.5-98 chr4 153155696 153156033 + 0.75 NA intron (NM_001130067, intron 1 of 11) intron (NM_001130067, intron 1 of 11) 2786 NM_001130067 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 163-40 chr5 22256429 22256835 + 0.75 NA intron (NM_001364104, intron 2 of 13) Tigger3b|DNA|TcMar-Tigger -42782 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 114.75-77 chr5 44056639 44056961 + 0.75 NA Intergenic Intergenic -331932 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 167.5-44 chr20 19535507 19535891 + 0.75 NA intron (NM_020689, intron 3 of 16) MamRep1879|DNA|hAT-Tip100? -251103 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 150.5-83 chr7 5737417 5737724 + 0.75 NA intron (NM_207111, intron 5 of 16) intron (NM_207111, intron 5 of 16) -25660 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 150.5-30 chr15 52273041 52273474 + 0.75 NA intron (NM_018728, intron 5 of 40) AluJr|SINE|Alu 3943 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 153-12 chr17 29695255 29695589 + 0.75 NA intron (NM_033389, intron 4 of 14) intron (NM_033389, intron 4 of 14) 66010 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 193.25-18 chr20 11680770 11681035 + 0.75 NA Intergenic LTR16A1|LTR|ERVL 189813 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 178.5-39 chr20 25731054 25731393 + 0.75 NA Intergenic Intergenic -19985 NR_135006 105372582 Hs.516951 NR_135006 LOC105372582 - uncharacterized LOC105372582 ncRNA 130.25-13 chr10 67305621 67305906 + 0.75 NA intron (NM_001127384, intron 5 of 17) L2|LINE|L2 97647 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 210.25-13 chr12 40670591 40670989 + 0.75 NA Intergenic L3|LINE|CR1 -21649 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 120.75-40 chr18 30830901 30831133 + 0.75 NA Intergenic L1PREC2|LINE|L1 211725 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 156.75-7 chr10 20011022 20011416 + 0.75 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 194787 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 121-3 chr1 62215340 62215537 + 0.75 NA Intergenic Intergenic 20589 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 148.25-64 chr6 135536327 135536730 + 0.75 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 38727 NR_152845 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 155.25-46 chr3 153566361 153566626 + 0.75 NA intron (NR_146713, intron 4 of 6) L3|LINE|CR1 81998 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 135-18 chr12 1915958 1916273 + 0.75 NA intron (NM_172364, intron 1 of 37).2 L2c|LINE|L2 2537 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 158.5-37 chr15 62783375 62783659 + 0.75 NA intron (NM_015059, intron 41 of 55) intron (NM_015059, intron 41 of 55) -40440 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 163.5-38 chr2 31685649 31685954 + 0.75 NA Intergenic L1MC5a|LINE|L1 -104863 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 153.75-35 chr16 78749868 78750161 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 650360 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 113-2 chr1 26032286 26032550 + 0.75 NA exon (NM_004455, exon 7 of 11) exon (NM_004455, exon 7 of 11) 10643 NM_004455 2134 Hs.150956 NM_004455 ENSG00000158008 EXTL1 EXTL exostosin like glycosyltransferase 1 protein-coding 114.5-11 chr11 119511735 119511956 + 0.75 NA Intergenic Intergenic -86860 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 130.25-59 chr21 35438968 35439240 + 0.75 NA intron (NR_073512, intron 2 of 2) MIRb|SINE|MIR 141660 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 128-36 chr3 29523156 29523336 + 0.75 NA intron (NM_001003792, intron 3 of 13) L2b|LINE|L2 241934 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 125-65 chr3 142251564 142251836 + 0.75 NA Intergenic L1PBa|LINE|L1 -26115 NM_001039547 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 180.5-68 chr5 24053772 24054155 + 0.75 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 102615 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 133.5-79 chr4 69575430 69575638 + 0.75 NA Intergenic LTR12C|LTR|ERV1 -49520 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 191.5-28 chr17 79787085 79787360 + 0.75 NA 3' UTR (NM_005189, exon 5 of 5) 3' UTR (NM_005189, exon 5 of 5) 9044 NM_032647 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 152-38 chr21 29940942 29941212 + 0.75 NA Intergenic L2b|LINE|L2 -1025 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 124.5-8 chr1 198336975 198337232 + 0.75 NA Intergenic Intergenic 180105 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 119.5 chr1 11182376 11182554 + 0.75 NA intron (NM_004958, intron 28 of 57) MIR|SINE|MIR -6890 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 134.5-57 chr3 22310944 22311305 + 0.75 NA Intergenic Intergenic 353985 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 121.5-41 chr16 12326192 12326428 + 0.75 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 349576 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 169.5-25 chr14 69341153 69341530 + 0.75 NA intron (NM_020692, intron 11 of 15) intron (NM_020692, intron 11 of 15) 56958 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 112.75-58 chr3 30756096 30756378 + 0.75 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 138424 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 115-48 chr21 28979336 28979547 + 0.75 NA intron (NM_015565, intron 6 of 29) L1ME5|LINE|L1 13436 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 157.25-44 chr21 16162260 16162726 + 0.75 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) -18905 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 133.25-12 chr11 7361450 7361720 + 0.75 NA intron (NM_175733, intron 3 of 6) L1MEd|LINE|L1 104250 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 202.25-24 chr22 26719472 26719757 + 0.75 NA intron (NR_110543, intron 2 of 5) AluSc|SINE|Alu 46771 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 159.5-54 chr22 34809819 34810130 + 0.75 NA intron (NR_138042, intron 3 of 4) AluSc8|SINE|Alu 187942 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 146.75-9 chr10 120922509 120922807 + 0.75 NA Intergenic AluSc|SINE|Alu 71296 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 118.75-82 chr5 40976774 40977049 + 0.75 NA intron (NM_000587, intron 16 of 17) intron (NM_000587, intron 16 of 17) 67414 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 139.75-10 chr1 234219885 234220213 + 0.75 NA intron (NM_001300845, intron 1 of 6) intron (NM_001300845, intron 1 of 6) 5838 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 135.75-70 chr4 34127233 34127608 + 0.75 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) -87527 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 141.75-21 chr13 62661278 62661539 + 0.75 NA Intergenic Intergenic 135284 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 148.25-36 chr2 136542896 136543209 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -222493 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 177.75-35 chr3 53951539 53951814 + 0.75 NA Intergenic L1MC5a|LINE|L1 -59817 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 200.75-14 chr14_GL000225v1_random 128978 129431 + 0.75 NA NA BSR/Beta|Satellite|Satellite NA NA 196-17 chr14 99819319 99819854 + 0.75 NA intron (NM_004434, intron 1 of 21) intron (NM_004434, intron 1 of 21) 26173 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 125.5-120 chr8 13940532 13940777 + 0.75 NA Intergenic LTR36|LTR|ERV1 310964 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 157.75-4 chr1 22944840 22945117 + 0.75 NA Intergenic HERV9-int|LTR|ERV1 27888 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 129.5-26 chr13 111451452 111451762 + 0.75 NA Intergenic Intergenic 130965 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 121.25-75 chr7 148009364 148009612 + 0.75 NA intron (NM_014141, intron 14 of 22) Tigger6a|DNA|TcMar-Tigger 337809 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 119-2 chr1 69819226 69819405 + 0.75 NA intron (NM_001370785, intron 4 of 26) L1MA9|LINE|L1 -100007 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 136.25-53 chr3 82654811 82655245 + 0.75 NA Intergenic Intergenic 668886 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 159.5-67 chr5 22866167 22866602 + 0.75 NA Intergenic Intergenic -13040 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 155-6 chr1 187237895 187238238 + 0.75 NA intron (NR_126347, intron 1 of 3) Charlie7|DNA|hAT-Charlie 145224 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 115.25-16 chr10 122242775 122243069 + 0.75 NA intron (NM_206862, intron 19 of 22) FLAM_C|SINE|Alu -28374 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 112.75-90 chr9 134914709 134914923 + 0.75 NA intron (NM_002003, intron 2 of 8) intron (NM_002003, intron 2 of 8) 3096 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 168-45 chr20 45496750 45497056 + 0.75 NA Intergenic LTR38C|LTR|ERV1 18719 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 155.75-26 chr2 81899289 81899556 + 0.75 NA Intergenic L1MC3|LINE|L1 -432476 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 151.75-56 chr3 177291362 177291592 + 0.75 NA Intergenic AluSx|SINE|Alu -2965 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 175.75-32 chr3 144196722 144197148 + 0.75 NA Intergenic L1MA3|LINE|L1 223854 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 136.75-38 chr17 69789640 69789904 + 0.75 NA intron (NR_109972, intron 3 of 4) MLT1G3-int|LTR|ERVL-MaLR -171935 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 166-60 chr8 101016014 101016534 + 0.75 NA Intergenic MIRb|SINE|MIR -35780 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 173.25-33 chr2 104109425 104109813 + 0.75 NA Intergenic Intergenic 298713 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 148.75-53 chr5 51826351 51826718 + 0.75 NA Intergenic L2a|LINE|L2 -181497 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 113-82 chr5 102733048 102733334 + 0.75 NA Intergenic Intergenic -21592 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 138.25-51 chr20 37996649 37997009 + 0.75 NA exon (NM_014657, exon 7 of 9) exon (NM_014657, exon 7 of 9) 36627 NM_001303457 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 166.25-39 chr22 47886339 47886719 + 0.75 NA Intergenic Intergenic 254855 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 148.25-11 chr11 35201953 35202211 + 0.75 NA intron (NM_001001389, intron 8 of 16) intron (NM_001001389, intron 8 of 16) 39132 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 150.5-24 chr13 95838378 95838612 + 0.75 NA intron (NM_020121, intron 36 of 38) L1MC|LINE|L1 161356 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 138.5-95 chr7 28770337 28770591 + 0.75 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 84331 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 132.25-91 chr8 131423563 131423849 + 0.75 NA Intergenic AluSq2|SINE|Alu -382797 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 131.75-24 chr13 29497601 29497851 + 0.75 NA intron (NM_015233, intron 6 of 8) intron (NM_015233, intron 6 of 8) -9976 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 129.25-26 chr14 49708704 49708944 + 0.75 NA intron (NM_172193, intron 1 of 12) intron (NM_172193, intron 1 of 12) 15704 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 174.75-31 chr3 23040269 23040611 + 0.75 NA Intergenic Intergenic 162138 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 168.25-21 chr15 23850923 23851230 + 0.75 NA Intergenic Intergenic -124071 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 265.25-22 chr4 30417623 30418230 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -302443 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 158-8 chr11 32132544 32132792 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 11244 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 139.25-45 chr2 32743492 32743909 + 0.75 NA intron (NM_017735, intron 12 of 19) intron (NM_017735, intron 12 of 19) -81733 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 133.25-21 chr12 120237250 120237522 + 0.75 NA intron (NM_002859, intron 1 of 10) AluSx|SINE|Alu 12777 NM_025157 5829 Hs.446336 NM_002859 ENSG00000089159 PXN - paxillin protein-coding 129.25-34 chr17 39187568 39187810 + 0.75 NA intron (NM_199248, intron 3 of 12) L1ME3B|LINE|L1 9980 NM_199247 782 Hs.635 NM_000723 ENSG00000067191 CACNB1 CAB1|CACNLB1|CCHLB1 calcium voltage-gated channel auxiliary subunit beta 1 protein-coding 123.25-50 chr21 30066281 30066529 + 0.75 NA Intergenic Intergenic 100400 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 214.25-19 chr2 144144107 144144425 + 0.75 NA intron (NM_001284238, intron 7 of 13) intron (NM_001284238, intron 7 of 13) 67313 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 125.5-84 chr3 160129459 160129687 + 0.75 NA intron (NR_108088, intron 3 of 9) Tigger18a|DNA|TcMar-Tigger 77519 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 164-72 chr9 76812398 76812716 + 0.75 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 48121 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 213-17 chr14 74199246 74199801 + 0.75 NA 3' UTR (NM_001024674, exon 6 of 6) 3' UTR (NM_001024674, exon 6 of 6) -39926 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 149.25-20 chr12 128449581 128449849 + 0.75 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 155623 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 184.5-38 chr2 19726152 19726566 + 0.75 NA Intergenic Intergenic -142495 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 128.25-39 chr20 40978020 40978229 + 0.75 NA Intergenic L1MA3|LINE|L1 -2589 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 115.25-3 chr1 63520890 63521079 + 0.75 NA intron (NM_001206739, intron 1 of 9) intron (NM_001206739, intron 1 of 9) 2289 NM_001347147 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 156.75-6 chr10 17807389 17807639 + 0.75 NA Intergenic AluSz|SINE|Alu -1834 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 113.25-93 chr4 102027488 102027720 + 0.75 NA intron (NM_017935, intron 9 of 16) intron (NM_017935, intron 9 of 16) 213762 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 117-24 chr14 47575491 47575741 + 0.75 NA intron (NM_001113498, intron 1 of 16) L4_B_Mam|LINE|RTE-X 99338 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 137.75-35 chr17 38929031 38929417 + 0.75 NA non-coding (NR_038847, exon 2 of 2) non-coding (NR_038847, exon 2 of 2) 4056 NR_038847 100505576 Hs.634043 NR_038847 ENSG00000263874 LINC00672 - long intergenic non-protein coding RNA 672 ncRNA 133.25-54 chr3 32018937 32019291 + 0.75 NA Intergenic Intergenic -37264 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 134.75-74 chr8 114750710 114751080 + 0.75 NA Intergenic LTR79|LTR|ERVL 917118 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 119.25-39 chr18 12804510 12804830 + 0.75 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 36292 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 172-38 chr5 145938480 145938722 + 0.75 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 2023 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 139.25-6 chr10 16634548 16634862 + 0.75 NA intron (NM_152724, intron 7 of 7) MIR3|SINE|MIR -112826 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 119.25-2 chr1 43069569 43069793 + 0.75 NA Intergenic Intergenic -78223 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 147.75-14 chr11 81750658 81750980 + 0.75 NA Intergenic L2c|LINE|L2 140017 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 153.75-64 chr5 32042620 32042905 + 0.75 NA intron (NM_178140, intron 7 of 24) intron (NM_178140, intron 7 of 24) -106603 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 125.5-134 chrX 133849480 133849674 + 0.75 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -47866 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 166.5-17 chr10 60885081 60885488 + 0.75 NA intron (NM_001350906, intron 9 of 12) L1MA7|LINE|L1 58901 NM_001242359 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 141.25-25 chr12 112647351 112647584 + 0.75 NA intron (NM_001347952, intron 1 of 21) L2a|LINE|L2 47709 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 141.5-27 chr12 112151139 112151374 + 0.75 NA intron (NM_006700, intron 9 of 11) intron (NM_006700, intron 9 of 11) 12065 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 170.25-46 chr3 89490975 89491297 + 0.75 NA Intergenic L1MDa|LINE|L1 383515 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 125-5 chr1 98844517 98844799 + 0.75 NA Intergenic Intergenic -159618 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 150-6 chr1 57962896 57963108 + 0.75 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 102421 NR_104365 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 183-76 chrX 151534270 151534726 + 0.75 NA Intergenic Intergenic 18947 NR_135614 105377213 Hs.147790 NR_135614 ENSG00000214915 LOC105377213 - uncharacterized LOC105377213 ncRNA 155-8 chr1 226949539 226949904 + 0.75 NA intron (NM_020247, intron 1 of 14) intron (NM_020247, intron 1 of 14) 9427 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 130.25-16 chr12 9820828 9821073 + 0.75 NA intron (NR_159359, intron 1 of 5) L1PA13|LINE|L1 -6531 NM_001291822 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 152.5-80 chr4 63648980 63649403 + 0.75 NA Intergenic Intergenic 760259 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 255.75-2 chr10 6765565 6766245 + 0.75 NA Intergenic Intergenic 13275 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 124.25-87 chr9 115082380 115082672 + 0.75 NA intron (NM_002160, intron 5 of 27) intron (NM_002160, intron 5 of 27) 35631 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 163.25-60 chr5 134917148 134917542 + 0.75 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) 12225 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 126.25-15 chr10 74708207 74708512 + 0.75 NA exon (NM_006721, exon 11 of 11) exon (NM_006721, exon 11 of 11) -116896 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 174-27 chr2 16269498 16269859 + 0.75 NA Intergenic Intergenic 219251 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 113.75-52 chr2 58417837 58418039 + 0.75 NA Intergenic Intergenic -102815 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 148.75-43 chr3 45003905 45004138 + 0.75 NA intron (NR_023353, intron 3 of 6) L1ME3A|LINE|L1 -22282 NM_003278 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 117-79 chr6 142092038 142092315 + 0.75 NA intron (NM_001324308, intron 1 of 2) intron (NM_001324308, intron 1 of 2) -3377 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 113.75-83 chr4 75849666 75849900 + 0.75 NA Intergenic L2c|LINE|L2 52669 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 204.25-8 chr10 100507012 100507380 + 0.75 NA intron (NM_015490, intron 7 of 25) intron (NM_015490, intron 7 of 25) 12665 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 129.5-25 chr13 65910400 65910660 + 0.75 NA Intergenic Intergenic 44483 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 134.25-39 chr2 122780319 122780612 + 0.75 NA Intergenic L1MEi|LINE|L1 293016 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 122.75-57 chr3 185675497 185675679 + 0.75 NA intron (NR_138486, intron 8 of 15) intron (NR_138486, intron 8 of 15) -37664 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 138.5-102 chr8 47932314 47932718 + 0.75 NA intron (NM_001081640, intron 16 of 84) AluYm1|SINE|Alu 27620 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 118.75-55 chr2 134267568 134267897 + 0.75 NA intron (NM_001371457, intron 2 of 16) intron (NM_001371457, intron 2 of 16) 13660 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 198.25-28 chr3 111249556 111249993 + 0.75 NA Intergenic MIRb|SINE|MIR 177958 NM_001243288 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 126.5-15 chr10 61872077 61872373 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -29474 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 130-7 chr10 120884092 120884316 + 0.75 NA intron (NM_018117, intron 14 of 28) L1M5|LINE|L1 32842 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 138.25-17 chr11 50535137 50535509 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 126176 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 113-19 chr12 18281904 18282252 + 0.75 NA 5' UTR (NM_004570, exon 2 of 32) 5' UTR (NM_004570, exon 2 of 32) 20538 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 188.75-50 chr8 71982474 71982816 + 0.75 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 92939 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 143.25-3 chr1 60711684 60711987 + 0.75 NA intron (NR_110628, intron 4 of 5) L1MA3|LINE|L1 -89150 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 118.75-63 chr21 23637569 23637899 + 0.75 NA Intergenic L1MA4|LINE|L1 -252899 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 266.5-17 chr3 118040014 118040632 + 0.75 NA Intergenic L1MA9|LINE|L1 -349398 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 149.5-24 chr12 54863770 54864016 + 0.75 NA Intergenic Intergenic 9377 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 126.25-20 chr11 62342918 62343210 + 0.75 NA intron (NM_025080, intron 2 of 6) L1ME1|LINE|L1 5616 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 253.25-2 chr1 48545366 48545762 + 0.75 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -73356 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 119.25-35 chr17 63641039 63641335 + 0.75 NA intron (NM_203351, intron 3 of 16) MIRb|SINE|MIR 18770 NM_001363768 4215 Hs.29282 NM_002401 ENSG00000198909 MAP3K3 MAPKKK3|MEKK3 mitogen-activated protein kinase kinase kinase 3 protein-coding 149-28 chr20 21452755 21453000 + 0.75 NA Intergenic Intergenic -55351 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 184-50 chr8 30127429 30127767 + 0.75 NA intron (NM_001128208, intron 3 of 3) AluJr|SINE|Alu 17067 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 124-49 chr4 152767044 152767348 + 0.75 NA Intergenic AluJo|SINE|Alu 12534 NM_145720 201798 Hs.301243 NM_145720 ENSG00000169989 TIGD4 - tigger transposable element derived 4 protein-coding 153.5-95 chr8 144376239 144376492 + 0.75 NA intron (NM_174922, intron 1 of 14) L2c|LINE|L2 2318 NM_174922 203054 Hs.283374 NM_174922 ENSG00000173137 ADCK5 - aarF domain containing kinase 5 protein-coding 148.25-24 chr16 17122150 17122469 + 0.75 NA intron (NM_022166, intron 10 of 11) L1PB1|LINE|L1 -12195 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 161-39 chr2 75243874 75244144 + 0.75 NA Intergenic L1MEf|LINE|L1 -44489 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 116.75-67 chr6 50185138 50185352 + 0.75 NA Intergenic Intergenic -135316 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 114-46 chr2 55000224 55000412 + 0.75 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) 9954 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 178-23 chr18 64875939 64876375 + 0.75 NA Intergenic L1PA2|LINE|L1 -616102 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 116.25-55 chr20 23467267 23467535 + 0.75 NA Intergenic MER9a1|LTR|ERVK -14525 NM_130794 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 246.25-8 chr16 13161391 13162037 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 260116 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 183-41 chr22 25445632 25446060 + 0.75 NA Intergenic AluJr|SINE|Alu -2241 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 174.25-18 chr11 34750709 34751097 + 0.75 NA Intergenic Intergenic 118337 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 179-61 chr9 4134596 4134943 + 0.75 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 17414 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 195.25-51 chr8 134443073 134443451 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -154809 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 187.75-7 chr12 70099423 70099810 + 0.75 NA Intergenic L1MC3|LINE|L1 -143414 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 176-2 chr1 14212302 14212556 + 0.75 NA Intergenic Intergenic 207544 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 128-65 chr8 86311188 86311393 + 0.75 NA Intergenic AluJb|SINE|Alu -31257 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 137.5-104 chr7 15377231 15377545 + 0.75 NA intron (NM_001004320, intron 10 of 12) intron (NM_001004320, intron 10 of 12) 184627 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 166.75-26 chr19 39649233 39649579 + 0.75 NA Intergenic L1PA6|LINE|L1 -6507 NM_001190441 148003 Hs.667238 NM_001190441 ENSG00000249861 LGALS16 - galectin 16 protein-coding 162.5-50 chr2 240160545 240160897 + 0.75 NA Intergenic Intergenic -20063 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 120-64 chr3 196814276 196814504 + 0.75 NA intron (NM_002577, intron 10 of 14) intron (NM_002577, intron 10 of 14) -53466 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 113.5-31 chr13 50109959 50110191 + 0.75 NA intron (NR_109974, intron 2 of 6) L1ME4a|LINE|L1 15466 NR_152566 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 127.5-52 chr18 58254082 58254329 + 0.75 NA intron (NM_001144965, intron 5 of 30) intron (NM_001144965, intron 5 of 30) 32634 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 131-41 chr3 129261772 129262196 + 0.75 NA intron (NM_016128, intron 12 of 23) intron (NM_016128, intron 12 of 23) -10162 NR_106884 102465496 NR_106884 ENSG00000278658 MIR6826 hsa-mir-6826 microRNA 6826 ncRNA 238-16 chr16 52222883 52223330 + 0.75 NA Intergenic L1ME2|LINE|L1 -35458 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 160.25-18 chr14 50543467 50543770 + 0.75 NA intron (NM_001127713, intron 1 of 13) ERVL-E-int|LTR|ERVL 10536 NM_001127713 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 218.25-5 chr10 15503778 15504178 + 0.75 NA Intergenic Intergenic -132689 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 180.25-30 chr2 160462576 160462921 + 0.75 NA intron (NM_002897, intron 1 of 13) AluSq2|SINE|Alu 31059 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 177.25-31 chr22 40549887 40550332 + 0.75 NA intron (NM_020831, intron 3 of 14) L1ME3A|LINE|L1 -16282 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 179.25-34 chr5 14772750 14773082 + 0.75 NA intron (NM_054027, intron 1 of 11) LTR16A1|LTR|ERVL 53096 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 123.75-10 chr10 17691004 17691268 + 0.75 NA intron (NM_001324288, intron 6 of 14) intron (NM_001324288, intron 6 of 14) 46985 NM_001324284 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 204.25-45 chr6 122720765 122721170 + 0.75 NA intron (NM_181795, intron 4 of 4) AluSq2|SINE|Alu -28234 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 131-24 chr17 58418684 58418899 + 0.75 NA Intergenic Intergenic -1209 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 115.75-45 chr2 104556272 104556499 + 0.75 NA Intergenic Intergenic -45876 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 157.5-62 chr22 31121709 31122041 + 0.75 NA Intergenic Intergenic -1048 NM_001284286 27124 Hs.517549 NM_014422 ENSG00000185133 INPP5J INPP5|PIB5PA|PIPP inositol polyphosphate-5-phosphatase J protein-coding 126-71 chr5 153802160 153802519 + 0.75 NA intron (NR_157093, intron 15 of 16) (CTTCCC)n|Simple_repeat|Simple_repeat 96648 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 134.75-60 chr5 128239433 128239769 + 0.75 NA Intergenic Intergenic 155835 NR_046207 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 154.5-50 chr21 31625689 31626161 + 0.75 NA Intergenic Intergenic -33697 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 142.5-13 chr10 74891838 74892134 + 0.75 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) -20800 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 206.25-29 chr5 33183707 33184087 + 0.75 NA Intergenic Intergenic -45838 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 145-13 chr12 100493026 100493264 + 0.75 NA intron (NR_135146, intron 2 of 10) intron (NR_135146, intron 2 of 10) -10215 NM_001206993 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 124.5-102 chr7 50596705 50597011 + 0.75 NA intron (NM_001350816, intron 16 of 17) intron (NM_001350816, intron 16 of 17) -31453 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 213-6 chr1 114674212 114674653 + 0.75 NA intron (NM_001172626, intron 12 of 14) intron (NM_001172626, intron 12 of 14) -4383 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 114.25-8 chr1 165092112 165092290 + 0.75 NA Intergenic L1M1|LINE|L1 264040 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 135.5-62 chr20 45086878 45087171 + 0.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR 14103 NM_002251 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 169-30 chr2 212818875 212819186 + 0.75 NA intron (NR_131941, intron 4 of 4) intron (NR_131941, intron 4 of 4) 23699 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 136-44 chr22 30442543 30442808 + 0.75 NA Intergenic AluSz|SINE|Alu 9989 NR_148046 105372990 Hs.565803 NR_148046 LOC105372990 - uncharacterized LOC105372990 ncRNA 119-9 chr10 5117965 5118250 + 0.75 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 23693 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 121.75-96 chr9 20635019 20635214 + 0.75 NA Intergenic MER65D|LTR|ERV1 -12617 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 186.25-2 chr1 175764323 175764726 + 0.75 NA Intergenic Intergenic -20929 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 136.25-55 chr3 117393247 117393450 + 0.75 NA Intergenic Intergenic 297577 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 180.5-78 chr6 129358816 129359276 + 0.75 NA intron (NM_000426, intron 32 of 64) MIR|SINE|MIR 351131 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 149-13 chr14 69496261 69496473 + 0.75 NA intron (NM_001161498, intron 1 of 12) MLT1A|LTR|ERVL-MaLR 11639 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 141-34 chr19 5318816 5319071 + 0.75 NA intron (NM_002850, intron 1 of 37) L2c|LINE|L2 21869 NM_002850 5802 Hs.744928 NM_002850 ENSG00000105426 PTPRS PTPSIGMA|R-PTP-S|R-PTP-sigma protein tyrosine phosphatase receptor type S protein-coding 187.25-65 chr8 122109143 122109531 + 0.75 NA Intergenic MIR3|SINE|MIR 459307 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 130.75-34 chr19 52407933 52408160 + 0.75 NA intron (NM_032423, intron 6 of 6) L1M4c|LINE|L1 10197 NM_032423 84436 Hs.662043 NM_032423 ENSG00000167555 ZNF528 - zinc finger protein 528 protein-coding 161.5-38 chr16 74007754 74008075 + 0.75 NA Intergenic Intergenic 207607 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 130.25-19 chr12 18018604 18018886 + 0.75 NA Intergenic L1PA15|LINE|L1 71448 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 148.25-32 chr2 6965916 6966197 + 0.75 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 32972 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 125.25-26 chr15 63109877 63110061 + 0.75 NA Intergenic Intergenic -11892 NM_001288585 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 259.5-12 chr16 59115255 59115761 + 0.75 NA Intergenic Intergenic -381192 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 183.25-56 chr9 86873991 86874451 + 0.75 NA Intergenic Intergenic 73285 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 164-60 chr7 116038370 116038736 + 0.75 NA Intergenic Intergenic -7790 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 187.5-33 chr2 25602323 25602660 + 0.75 NA intron (NM_001351393, intron 4 of 17) intron (NM_001351393, intron 4 of 17) 47731 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 174.5-39 chr2 52741150 52741461 + 0.75 NA Intergenic Intergenic -38690 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 176-8 chr10 87735107 87735531 + 0.75 NA intron (NM_001015880, intron 9 of 12) intron (NM_001015880, intron 9 of 12) 75441 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 152.75-19 chr16 50531050 50531365 + 0.75 NA Intergenic Intergenic -17189 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 116.25-79 chr6 167035039 167035389 + 0.75 NA intron (NM_001278690, intron 10 of 10) intron (NM_001278690, intron 10 of 10) 35817 NM_007045 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 200.25-13 chr10 130461219 130461752 + 0.75 NA Intergenic Intergenic 325076 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 196.75-2 chr1 190295254 190295567 + 0.75 NA intron (NM_199051, intron 2 of 7) L1M1|LINE|L1 180600 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 124.25-32 chr14 73839971 73840239 + 0.75 NA Intergenic Intergenic -9970 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 251-31 chr8 80775842 80776252 + 0.75 NA intron (NM_001033723, intron 2 of 8) L1ME4c|LINE|L1 98421 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 176-24 chr22 21722878 21723285 + 0.75 NA intron (NM_013313, intron 1 of 4) 7SLRNA|srpRNA|srpRNA 12713 NR_130910 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 194.25-34 chr22 31656421 31656798 + 0.75 NA intron (NM_001326416, intron 1 of 10) AluSx4|SINE|Alu 5606 NM_001326419 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 129.25-77 chr8 138470050 138470245 + 0.75 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 27114 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 116.25-90 chr8 49957966 49958200 + 0.75 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 46676 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 130.5-48 chr2 165221969 165222339 + 0.75 NA Intergenic Intergenic -17260 NM_001371246 148.75-38 chr2 190518034 190518330 + 0.75 NA intron (NR_136298, intron 4 of 8) intron (NR_136298, intron 4 of 8) 16540 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 132-48 chr3 58294896 58295207 + 0.75 NA TTS (NM_020676) TTS (NM_020676) -11194 NM_001348712 109703458 Hs.446320 NM_001348712 ENSG00000255154 HTD2 - hydroxyacyl-thioester dehydratase type 2 protein-coding 142.75-5 chr1 111483594 111483906 + 0.75 NA exon (NM_001302680, exon 5 of 5) exon (NM_001302680, exon 5 of 5) 9766 NM_174896 128346 Hs.288010 NM_174896 ENSG00000143110 C1orf162 - chromosome 1 open reading frame 162 protein-coding 145-57 chr6 65605103 65605322 + 0.75 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -25408 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 215.25-19 chr21 31849221 31849702 + 0.75 NA Intergenic Intergenic -23559 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 201.5 chr1 8110274 8110589 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -84122 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 125.75-53 chr4 26568884 26569198 + 0.75 NA Intergenic Intergenic -14883 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 233.75-16 chr17 59481547 59481937 + 0.75 NA intron (NR_110813, intron 2 of 2) MIR|SINE|MIR 45115 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 168.25-22 chr15 37781879 37782279 + 0.75 NA Intergenic Intergenic -152528 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 198.5-18 chr18 54583389 54583823 + 0.75 NA Intergenic Intergenic -4153 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 146.5-40 chr18 4713340 4713759 + 0.75 NA Intergenic L2a|LINE|L2 -258242 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 165.25-17 chr16 82712294 82712645 + 0.75 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 23538 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 208.5-45 chr20 47701448 47701783 + 0.75 NA intron (NM_198596, intron 4 of 20) L1MC5|LINE|L1 84449 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 113.25-23 chr11 103987401 103987719 + 0.75 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -49080 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 136.25-83 chrX 138079875 138080126 + 0.75 NA Intergenic L1MB5|LINE|L1 513873 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 113.25-104 chr7 30183177 30183358 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 48281 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 213-28 chr21 27431004 27431461 + 0.75 NA Intergenic L2|LINE|L2 -291147 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 153-25 chr21 24553494 24553834 + 0.75 NA Intergenic Intergenic 124924 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 137.5-67 chr2 213207983 213208356 + 0.75 NA Intergenic MER57A1|LTR|ERV1 -40459 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 118.25-89 chr6 49988329 49988611 + 0.75 NA Intergenic L1MC1|LINE|L1 -18845 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 129.5-13 chr10 82321236 82321579 + 0.75 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -88487 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 174.5-23 chr14 36124441 36124731 + 0.75 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 52065 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 120.5-29 chr13 81384615 81384913 + 0.75 NA Intergenic MER57E1|LTR|ERV1 -157781 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 166-10 chr11 5487071 5487483 + 0.75 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) -1408 NM_001005163 390066 Hs.553734 NM_001005163 ENSG00000181609 OR52D1 OR11-43 olfactory receptor family 52 subfamily D member 1 protein-coding 210.25-14 chr14 60260832 60261248 + 0.75 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 11819 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 140.25-19 chr14 33818842 33819147 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger 110057 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 194.25-12 chr13 77725248 77725550 + 0.75 NA intron (NM_001242868, intron 2 of 6) intron (NM_001242868, intron 2 of 6) -15761 NM_001242871 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 146.25-15 chr11 96087491 96087735 + 0.75 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -163406 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 184.75-7 chr1 194178430 194178712 + 0.75 NA Intergenic L1MDb|LINE|L1 873826 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 131.25-26 chr12 18266294 18266502 + 0.75 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 4858 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 135.25-16 chr10 115947604 115947909 + 0.75 NA 3' UTR (NM_207303, exon 29 of 29) 3' UTR (NM_207303, exon 29 of 29) 247033 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 124.25-18 chr10 122684001 122684268 + 0.75 NA Intergenic MER92B|LTR|ERV1 11252 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 128.75-4 chr1 209718634 209718833 + 0.75 NA intron (NM_181755, intron 5 of 6) L1MB3|LINE|L1 5392 NR_134509 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 144.25-26 chr16 55361869 55362173 + 0.75 NA Intergenic Intergenic 37462 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 165.5-53 chr20 23264059 23264280 + 0.75 NA Intergenic AluSx1|SINE|Alu -86622 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 128.5-68 chr4 66955106 66955349 + 0.75 NA Intergenic Intergenic 466773 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 125.75-83 chrX 96500658 96501026 + 0.75 NA Intergenic MLT2B4|LTR|ERVL -162940 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 154-9 chr11 26845480 26845790 + 0.75 NA Intergenic Intergenic -123575 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 151.25-52 chr7 21759271 21759636 + 0.75 NA intron (NM_001277115, intron 54 of 81) intron (NM_001277115, intron 54 of 81) 186446 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 120.5-38 chr16 72636608 72636894 + 0.75 NA intron (NR_159372, intron 1 of 7) L1MEg|LINE|L1 28219 NR_159372 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 115-2 chr1 51880673 51880943 + 0.75 NA Intergenic LTR64|LTR|ERV1 -1871 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 172.25-18 chr14 54087687 54088081 + 0.75 NA Intergenic Intergenic -130993 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 118.25-50 chr2 205506805 205507055 + 0.75 NA intron (NM_205863, intron 20 of 21) MLT1K|LTR|ERVL-MaLR -175570 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 139.5-3 chr1 100281216 100281559 + 0.75 NA TTS (NR_030279) TTS (NR_030279) 146 NR_030279 693138 NR_030279 ENSG00000207750 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 116.5-124 chr8 132142137 132142376 + 0.75 NA intron (NM_001204824, intron 9 of 14) Charlie4a|DNA|hAT-Charlie -36991 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 248-14 chr20 38483676 38484139 + 0.75 NA intron (NM_020336, intron 1 of 29) intron (NM_020336, intron 1 of 29) 11064 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 219.75-37 chr6 162536249 162536721 + 0.75 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -190647 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 187.25-16 chr11 100668188 100668665 + 0.75 NA Intergenic Intergenic -18862 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 158.75-73 chr8 126276988 126277268 + 0.75 NA Intergenic L1MB1|LINE|L1 -48367 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 151.75-63 chr5 6707105 6707465 + 0.75 NA non-coding (NR_103771, exon 1 of 3) non-coding (NR_103771, exon 1 of 3) 426 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 113.5-3 chr1 84686927 84687118 + 0.75 NA intron (NM_014021, intron 1 of 14) intron (NM_014021, intron 1 of 14) 3439 NM_001166417 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 215.75-7 chr15 75438964 75439420 + 0.75 NA intron (NM_001145357, intron 1 of 20) MER20|DNA|hAT-Charlie 12498 NM_001145358 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 118-37 chr18 35779457 35779666 + 0.75 NA Intergenic HAL1|LINE|L1 124992 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 159.25-10 chr11 40926065 40926443 + 0.75 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 533382 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 119-38 chr2 85136871 85137087 + 0.75 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 3587 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 130.25-91 chr8 133641409 133641624 + 0.75 NA Intergenic Intergenic 42550 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 150.75-17 chr15 86543805 86544111 + 0.75 NA intron (NM_152336, intron 19 of 24) MLT1I-int|LTR|ERVL-MaLR -226990 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 187.75-40 chr4 92933712 92934007 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 629460 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 139.25-71 chr6 106667156 106667498 + 0.75 NA 3' UTR (NM_018292, exon 11 of 11) 3' UTR (NM_018292, exon 11 of 11) -28158 NR_149100 105377926 Hs.635821 NR_149100 ENSG00000229654 LINC02526 - long intergenic non-protein coding RNA 2526 ncRNA 245-18 chr3 52043729 52044453 + 0.75 NA Intergenic Intergenic 12480 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 122-6 chr1 151624897 151625131 + 0.75 NA intron (NM_030918, intron 1 of 11) intron (NM_030918, intron 1 of 11) 12964 NM_030918 81609 Hs.192326 NM_030918 ENSG00000143376 SNX27 MRT1|MY014 sorting nexin 27 protein-coding 182.75-20 chr2 227498235 227498539 + 0.75 NA intron (NM_004504, intron 2 of 12) intron (NM_004504, intron 2 of 12) 26215 NM_004504 3267 Hs.352962 NM_004504 ENSG00000173744 AGFG1 HRB|RAB|RIP ArfGAP with FG repeats 1 protein-coding 225-12 chr2 34776231 34776746 + 0.75 NA Intergenic Intergenic 98931 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 135.25-33 chr18 5305756 5305996 + 0.75 NA Intergenic L1MD3|LINE|L1 -8823 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 159.25-59 chr6 51698943 51699291 + 0.75 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 77247 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 200.25-41 chr6 117837800 117838193 + 0.75 NA Intergenic Intergenic -69268 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 126.25-35 chr16 83794737 83794937 + 0.75 NA intron (NM_001220489, intron 12 of 12) intron (NM_001220489, intron 12 of 12) 9139 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 118.5-62 chr2 238679277 238679477 + 0.75 NA Intergenic L1MC5|LINE|L1 -123878 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 128.75-71 chr4 107664713 107665002 + 0.75 NA intron (NM_005443, intron 5 of 11) intron (NM_005443, intron 5 of 11) 55377 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 133.25-70 chr6 105234472 105234786 + 0.75 NA Intergenic Intergenic -54615 NM_022361 64208 Hs.458336 NM_022361 ENSG00000132429 POPDC3 POP3|bA355M14.1 popeye domain containing 3 protein-coding 130.25-32 chr15 81719782 81720145 + 0.75 NA Intergenic L1M5|LINE|L1 326055 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 147.5-87 chr9 100641520 100641893 + 0.75 NA Intergenic Intergenic 63627 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 114-41 chr17 21855385 21855672 + 0.75 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 163005 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 135.25-54 chr20 39221651 39221896 + 0.75 NA intron (NR_027124, intron 1 of 3) intron (NR_027124, intron 1 of 3) 2975 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 128.75-50 chr22 21755681 21756089 + 0.75 NA Intergenic Intergenic -20091 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 257.25-14 chr2 81454913 81455481 + 0.75 NA Intergenic Intergenic 11749 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 129.25-17 chr12 2921918 2922151 + 0.75 NA intron (NM_003324, intron 3 of 10) AluJr|SINE|Alu 31143 NM_003324 7289 Hs.655333 NM_003324 ENSG00000078246 TULP3 TUBL3 TUB like protein 3 protein-coding 122.5-71 chr5 66299121 66299399 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -89814 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 195.25-12 chr11 116407921 116408407 + 0.75 NA Intergenic MLT2B2|LTR|ERVL -231258 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 155-47 chr5 95354626 95354934 + 0.75 NA Intergenic LTR106_Mam|LTR|LTR -36586 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 114.75-20 chr12 41725552 41725803 + 0.75 NA Intergenic L1MEg|LINE|L1 -38512 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 158.5-84 chr5 18242688 18243108 + 0.75 NA Intergenic Intergenic 435624 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 121.5-78 chr22 26827909 26828223 + 0.75 NA Intergenic Intergenic -32145 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 205.5-47 chr5 134931570 134931936 + 0.75 NA intron (NM_032151, intron 2 of 3) intron (NM_032151, intron 2 of 3) 26633 NM_032151 84105 Hs.710014 NM_032151 ENSG00000132570 PCBD2 DCOH2|DCOHM|PHS2 pterin-4 alpha-carbinolamine dehydratase 2 protein-coding 129.5-5 chr1 77999890 78000268 + 0.75 NA intron (NM_001317100, intron 2 of 3) intron (NM_001317100, intron 2 of 3) -4749 NM_001317103 11080 Hs.13852 NM_007034 ENSG00000162616 DNAJB4 DNAJW|DjB4|HLJ1 DnaJ heat shock protein family (Hsp40) member B4 protein-coding 186.75-43 chr4 153884866 153885172 + 0.75 NA Intergenic Intergenic -95936 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 190.25-20 chr16 11259652 11260019 + 0.75 NA Intergenic L2b|LINE|L2 -3653 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 198.75-43 chr6 50244864 50245163 + 0.75 NA Intergenic Intergenic -195084 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 119.25-71 chr3 175636113 175636301 + 0.75 NA intron (NM_207015, intron 11 of 13) (TG)n|Simple_repeat|Simple_repeat 140126 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 167-15 chr15 90439087 90439400 + 0.75 NA intron (NM_003870, intron 5 of 37) intron (NM_003870, intron 5 of 37) 51001 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 191-44 chr5 152380863 152381325 + 0.75 NA Intergenic Intergenic 24185 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 112.75-13 chr10 86778062 86778308 + 0.75 NA intron (NM_004329, intron 1 of 12) MER30|DNA|hAT-Charlie 21546 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 171.75-19 chr15 77439980 77440397 + 0.75 NA intron (NM_001304505, intron 1 of 9) L1ME3|LINE|L1 19300 NM_001304504 10363 Hs.69594 NM_018200 ENSG00000140382 HMG20A HMGX1|HMGXB1 high mobility group 20A protein-coding 186.25-11 chr11 77610331 77610787 + 0.75 NA TTS (NM_173039) TTS (NM_173039) 20606 NM_173039 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 212.75-8 chr13 75591645 75592081 + 0.75 NA intron (NM_006002, intron 6 of 8) Tigger4a|DNA|TcMar-Tigger -28571 NM_005358 4008 Hs.207631 NM_005358 ENSG00000136153 LMO7 FBX20|FBXO20|LMO7b|LOMP LIM domain 7 protein-coding 115.5-82 chr6 79087478 79087709 + 0.75 NA Intergenic Intergenic -9339 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 185.5-36 chr18 2043469 2043801 + 0.75 NA Intergenic Intergenic 527870 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 118.25-83 chr5 104676581 104676778 + 0.75 NA Intergenic L1PB1|LINE|L1 -422795 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 147.25-52 chr5 33586248 33586571 + 0.75 NA intron (NM_001324512, intron 16 of 21) intron (NM_001324512, intron 16 of 21) 145633 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 164.25-8 chr1 204334139 204334411 + 0.75 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 25654 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 113.5-107 chr6 62756844 62757101 + 0.75 NA Intergenic L1MB8|LINE|L1 -470745 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 183-30 chr17 35248827 35249321 + 0.75 NA intron (NM_144975, intron 1 of 4) MER89-int|LTR|ERV1 6002 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 239.25-21 chr4 174236214 174236840 + 0.75 NA TTS (NM_012180) TTS (NM_012180) -16129 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 126-42 chr2 38199294 38199591 + 0.75 NA Intergenic Intergenic 68337 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 183.5-51 chr3 124192306 124192685 + 0.75 NA intron (NM_001024660, intron 1 of 59) L1MA1|LINE|L1 59566 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 165.5-26 chr13 110760142 110760482 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 44875 NM_001267728 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 250.5-7 chr11 7617439 7617814 + 0.75 NA intron (NM_001351856, intron 6 of 23) intron (NM_001351856, intron 6 of 23) 11892 NM_001256569 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 172.5-40 chr2 198317953 198318197 + 0.75 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 57022 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 180.25-23 chr18 4999381 4999698 + 0.75 NA Intergenic L1M1|LINE|L1 -81643 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 165.25-59 chr9 121405038 121405337 + 0.75 NA Intergenic L2a|LINE|L2 -34883 NM_001270527 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 168-49 chr3 123040590 123040908 + 0.75 NA Intergenic L2b|LINE|L2 -12144 NR_046079 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 129.75-42 chr2 135364125 135364377 + 0.75 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 166334 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 142.25-17 chr12 97594755 97595063 + 0.75 NA Intergenic Intergenic 31097 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 141-71 chr6 112301707 112302005 + 0.75 NA intron (NR_121193, intron 2 of 2) LTR82A|LTR|ERVL -45474 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 145.75-25 chr18 1959275 1959653 + 0.75 NA Intergenic MIRb|SINE|MIR -599835 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 181.75-9 chr12 19743956 19744316 + 0.75 NA Intergenic Intergenic -270549 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 128.75-56 chr3 48181941 48182161 + 0.75 NA intron (NM_001789, intron 5 of 14) intron (NM_001789, intron 5 of 14) 6366 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 146-55 chr7 27981339 27981588 + 0.75 NA intron (NM_175061, intron 2 of 4) L1MC4|LINE|L1 -198994 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 130.75-71 chr7 29765541 29765835 + 0.75 NA Intergenic OldhAT1|DNA|hAT-Ac -40866 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 121.5-74 chr20 62573600 62573818 + 0.75 NA Intergenic L1ME2|LINE|L1 8797 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 226-7 chr11 28505284 28505802 + 0.75 NA Intergenic L2c|LINE|L2 -27995 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 141-53 chr3 6978547 6978898 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -84705 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 206.25-3 chr10 21960256 21960762 + 0.75 NA intron (NM_022365, intron 1 of 11) AluJb|SINE|Alu 43221 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 138.5-107 chr8 122074863 122075179 + 0.75 NA Intergenic L3|LINE|CR1 -433581 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 118.5-57 chr2 20763983 20764230 + 0.75 NA intron (NM_021925, intron 4 of 6) intron (NM_021925, intron 4 of 6) 58995 NM_001282724 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 124.75-60 chr3 88644883 88645215 + 0.75 NA Intergenic Intergenic 306593 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 128.25-79 chr8 82268094 82268282 + 0.75 NA Intergenic Intergenic -425902 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 139.75-51 chr20 62301087 62301417 + 0.75 NA Intergenic Intergenic -1644 NM_175573 11047 Hs.90107 NM_007002 ENSG00000130706 ADRM1 ARM-1|ARM1|GP110 adhesion regulating molecule 1 protein-coding 194.5-74 chr8 102037890 102038229 + 0.75 NA intron (NM_001040624, intron 1 of 7) MamGypsy2-I|LTR|Gypsy 53627 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 137.25-54 chr3 174382347 174382588 + 0.75 NA Intergenic MER34C2|LTR|ERV1 -461671 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 186-34 chr3 122025193 122025681 + 0.75 NA Intergenic MIR|SINE|MIR -3190 NM_001199799 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 147.5-24 chr13 74637269 74637617 + 0.75 NA Intergenic AluSg|SINE|Alu 84600 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 145.5-92 chr8 62806945 62807179 + 0.75 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -170799 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 150.5-88 chr7 105970669 105971084 + 0.75 NA intron (NM_001301161, intron 1 of 17) intron (NM_001301161, intron 1 of 17) 7612 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 113.25-42 chr14 72917253 72917466 + 0.75 NA Intergenic Intergenic -9105 NM_001163509 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 170.75-27 chr16 35420735 35421110 + 0.75 NA Intergenic Intergenic 57391 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 133.25-46 chr2 139612138 139612377 + 0.75 NA Intergenic L1MC2|LINE|L1 714933 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 168.25-53 chr5 114131688 114132012 + 0.75 NA Intergenic L1PA10|LINE|L1 -230220 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 136.5-10 chr10 25132626 25132855 + 0.75 NA intron (NR_120649, intron 6 of 7) intron (NR_120649, intron 6 of 7) 19682 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 114.75-10 chr10 34524898 34525058 + 0.75 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 290318 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 151.75-84 chrX 95445468 95445830 + 0.75 NA Intergenic L1MA2|LINE|L1 -382423 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 116-77 chr8 136403751 136404007 + 0.75 NA Intergenic L1MA5|LINE|L1 -126919 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 129.5-15 chr10 128665888 128666231 + 0.75 NA Intergenic Intergenic -246774 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 142.25-33 chr19 39286344 39286744 + 0.75 NA Intergenic L1MB4|LINE|L1 -9863 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 186.75-50 chr5 138512419 138512726 + 0.75 NA intron (NR_157090, intron 5 of 9) intron (NR_157090, intron 5 of 9) 29139 NM_001282185 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 123.75-37 chr14 37621032 37621245 + 0.75 NA intron (NM_001310135, intron 2 of 32) intron (NM_001310135, intron 2 of 32) 25509 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 169.5-77 chr7 115805119 115805521 + 0.75 NA Intergenic Intergenic 162993 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 142-42 chr3 47604070 47604266 + 0.75 NA intron (NM_003074, intron 26 of 27) intron (NM_003074, intron 26 of 27) -23928 NM_001206942 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 195-39 chr3 183854501 183854900 + 0.75 NA intron (NM_001324437, intron 4 of 7) L1MB2|LINE|L1 -29123 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 200.75-16 chr17 10870335 10870926 + 0.75 NA Intergenic Intergenic -32543 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 113-43 chr2 38851131 38851330 + 0.75 NA intron (NM_001329963, intron 9 of 23) intron (NM_001329963, intron 9 of 23) 24704 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 152.75-54 chr5 100795594 100795929 + 0.75 NA Intergenic MER39|LTR|ERV1 20804 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 145.5-85 chr6 130031550 130031854 + 0.75 NA intron (NM_001007102, intron 2 of 21) intron (NM_001007102, intron 2 of 21) 12058 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 210.25-25 chr2 133475158 133475503 + 0.75 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 93133 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 174.25-60 chr8 127661037 127661388 + 0.75 NA Intergenic MIRb|SINE|MIR 72755 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 118-60 chr6 57156741 57157051 + 0.75 NA intron (NM_015555, intron 12 of 13) MER1B|DNA|hAT-Charlie 15317 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 128.25-73 chr6 135530278 135530646 + 0.75 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 32661 NR_152845 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 129.5-31 chr14 71718663 71718850 + 0.75 NA intron (NM_001354286, intron 18 of 24) L1ME3|LINE|L1 132458 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 147.5-39 chr18 72290488 72290815 + 0.75 NA Intergenic Intergenic 253691 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 199.75-8 chr14 53849340 53849664 + 0.75 NA Intergenic Intergenic 98982 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 147.75-69 chr6 93790272 93790714 + 0.75 NA Intergenic Intergenic 72190 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 124.5-51 chr2 24576805 24577038 + 0.75 NA intron (NM_001362955, intron 3 of 23) intron (NM_001362955, intron 3 of 23) -7556 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 119.25-31 chr15 101129579 101129809 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR 122354 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 137.5-62 chr2 158814144 158814625 + 0.75 NA intron (NM_001017920, intron 3 of 3) intron (NM_001017920, intron 3 of 3) 19067 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 200.5-33 chr2 72282857 72283237 + 0.75 NA intron (NR_135773, intron 19 of 21) L1MC1|LINE|L1 -135185 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 128.25-52 chr4 34163172 34163468 + 0.75 NA intron (NR_147184, intron 2 of 3) L1MA2|LINE|L1 106427 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 141.25-13 chr10 89221651 89222087 + 0.75 NA intron (NM_001127605, intron 8 of 9) intron (NM_001127605, intron 8 of 9) -14552 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 239.75-28 chr7 17145815 17146239 + 0.75 NA Intergenic Tigger2a|DNA|TcMar-Tigger -152625 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 168.5-51 chr20 20196669 20197016 + 0.75 NA intron (NM_015585, intron 16 of 26) intron (NM_015585, intron 16 of 26) 140196 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 156-16 chr11 34052484 34052734 + 0.75 NA exon (NM_203364, exon 2 of 18) exon (NM_203364, exon 2 of 18) 878 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 119.5-7 chr1 207000343 207000583 + 0.75 NA Intergenic Intergenic -29838 NM_032029 83953 Hs.145519 NM_032029 ENSG00000162897 FCAMR CD351|FCA/MR|FKSG87 Fc fragment of IgA and IgM receptor protein-coding 121-8 chr1 153876288 153876494 + 0.75 NA intron (NM_020699, intron 1 of 10) intron (NM_020699, intron 1 of 10) 46581 NM_020699 57459 Hs.4779 NM_020699 ENSG00000143614 GATAD2B MRD18|P66beta|p68 GATA zinc finger domain containing 2B protein-coding 125.25-67 chr5 134100182 134100424 + 0.75 NA Intergenic Intergenic -14378 NM_003202 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 129.5-77 chr5 117011669 117011870 + 0.75 NA Intergenic HSMAR1|DNA|TcMar-Mariner -249560 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 216.75-36 chr5 79646786 79647153 + 0.75 NA intron (NM_001349553, intron 10 of 16) AluJr4|SINE|Alu 34528 NM_173797 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 152.5-81 chr4 74059789 74060219 + 0.75 NA Intergenic Intergenic -4605 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 133.25-90 chr9 117007161 117007402 + 0.75 NA intron (NM_014010, intron 6 of 21) L2a|LINE|L2 173920 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 140.5-51 chr2 164690061 164690379 + 0.75 NA intron (NM_001365670, intron 13 of 13) L1ME3B|LINE|L1 -2443 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 118.25-4 chr1 233171878 233172035 + 0.75 NA intron (NM_014801, intron 17 of 33) L1ME3B|LINE|L1 123769 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 126.75 chr1 11682041 11682289 + 0.75 NA intron (NM_001127325, intron 1 of 8) MIR|SINE|MIR -1017 NM_006341 10459 Hs.19400 NM_006341 ENSG00000116670 MAD2L2 FANCV|MAD2B|POLZ2|REV7 mitotic arrest deficient 2 like 2 protein-coding 119-49 chr3 16636070 16636269 + 0.75 NA Intergenic L1MB8|LINE|L1 -30746 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 143.25-58 chr5 12641481 12641839 + 0.75 NA intron (NR_033383, intron 2 of 3) LTR16E2|LTR|ERVL -26199 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 167-28 chr18 36626076 36626446 + 0.75 NA intron (NM_001281739, intron 10 of 23) L2a|LINE|L2 37157 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 143-47 chr3 34323305 34323495 + 0.75 NA Intergenic Intergenic 524770 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 208.25-20 chr21 28747088 28747560 + 0.75 NA Intergenic MIRc|SINE|MIR 138043 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 118.5-72 chr3 177348285 177348522 + 0.75 NA Intergenic L1MA9|LINE|L1 53961 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 118-18 chr12 21057247 21057536 + 0.75 NA intron (NM_001009562, intron 10 of 12) L2a|LINE|L2 41695 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 126.5-53 chr2 127466668 127466887 + 0.75 NA Intergenic Intergenic -43159 NR_039944 100616187 NR_039944 ENSG00000264075 MIR4783 - microRNA 4783 ncRNA 124-55 chr5 52097258 52097459 + 0.75 NA Intergenic L1MC1|LINE|L1 89327 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 164.25-18 chr12 94301529 94301981 + 0.75 NA intron (NM_005761, intron 28 of 30) L2c|LINE|L2 39234 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 142.75-75 chr6 56924860 56925206 + 0.75 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 29797 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 136.25-35 chr16 73448452 73448830 + 0.75 NA Intergenic HAL1b|LINE|L1 61836 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 157.75-50 chr22 43698026 43698291 + 0.75 NA intron (NM_198856, intron 8 of 29) ERVL-E-int|LTR|ERVL 114147 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 138.5-103 chr8 54325324 54325508 + 0.75 NA Intergenic AluJr4|SINE|Alu -5270 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 142.5-67 chr4 112315947 112316235 + 0.75 NA intron (NM_001102406, intron 2 of 15) L1MB3|LINE|L1 18722 NM_025144 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 168.25-65 chr8 126599035 126599347 + 0.75 NA Intergenic L1MD2|LINE|L1 -40713 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 142.75-32 chr16 74079992 74080257 + 0.75 NA Intergenic AluSq2|SINE|Alu 135397 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 118.75-84 chr5 61868886 61869073 + 0.75 NA Intergenic L1MC4|LINE|L1 -133281 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 119-45 chr2 227647205 227647568 + 0.75 NA Intergenic Intergenic -14066 NM_020161 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 130.5-98 chr8 105476407 105476791 + 0.75 NA intron (NM_001362837, intron 3 of 7) L2a|LINE|L2 157056 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 126.25-18 chr11 50528368 50528558 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 119316 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 124.75-23 chr12 64061031 64061270 + 0.75 NA intron (NM_001346201, intron 6 of 21) intron (NM_001346201, intron 6 of 21) 161146 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 216.25-5 chr10 33824041 33824584 + 0.75 NA Intergenic Intergenic -51632 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 145.25-83 chr8 107411246 107411656 + 0.75 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -74936 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 114.75-31 chr14 59321626 59321798 + 0.75 NA intron (NM_001270520, intron 5 of 24) intron (NM_001270520, intron 5 of 24) 58271 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 149.5-49 chr19 36524589 36524988 + 0.75 NA intron (NM_001012756, intron 2 of 3) intron (NM_001012756, intron 2 of 3) 3483 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 150.25-85 chrX 93859832 93860140 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR 185780 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 132.5-20 chr12 95998559 95998750 + 0.75 NA Intergenic L2b|LINE|L2 -2289 NM_001258333 3034 Hs.190783 NM_002108 ENSG00000084110 HAL HIS|HSTD histidine ammonia-lyase protein-coding 143.25-36 chr2 147111163 147111363 + 0.75 NA Intergenic Intergenic 524206 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 126.75-84 chr6 91315355 91315706 + 0.75 NA Intergenic Intergenic -206130 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 208-40 chr8 87098223 87098721 + 0.75 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 232057 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 159.25-21 chr16 1845945 1846184 + 0.75 NA intron (NM_001163560, intron 9 of 13) intron (NM_001163560, intron 9 of 13) 18840 NM_001142398 81889 Hs.513265 NM_031208 ENSG00000180185 FAHD1 C16orf36|YISKL fumarylacetoacetate hydrolase domain containing 1 protein-coding 117.5-99 chr9 84015451 84015636 + 0.75 NA Intergenic AluSx|SINE|Alu 34738 NM_001358292 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 147.75 chr1 8377372 8377666 + 0.75 NA intron (NM_001042681, intron 12 of 22) intron (NM_001042681, intron 12 of 22) 46313 NM_001042682 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 153.75-36 chr17 57648821 57649314 + 0.75 NA intron (NM_001322250, intron 10 of 13) intron (NM_001322250, intron 10 of 13) -40655 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 216.5-30 chr4 138965855 138966364 + 0.75 NA intron (NR_133945, intron 2 of 2) AluSp|SINE|Alu 46537 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 183-44 chr3 65915957 65916294 + 0.75 NA intron (NR_046575, intron 2 of 2) AluSz6|SINE|Alu 22309 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 307.5-10 chr5 32885329 32885798 + 0.75 NA Intergenic L1M4|LINE|L1 -61880 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 118.75-85 chr5 76788275 76788522 + 0.75 NA Intergenic Intergenic -30632 NM_005242 2150 Hs.744181 NM_005242 ENSG00000164251 F2RL1 GPR11|PAR2 F2R like trypsin receptor 1 protein-coding 112.75-84 chr8 107645807 107646090 + 0.75 NA Intergenic L1M4a2|LINE|L1 -148030 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 207.5-38 chr3 32707095 32707463 + 0.75 NA intron (NM_001256741, intron 3 of 17) intron (NM_001256741, intron 3 of 17) 11738 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 142.75-18 chr10 81638679 81638918 + 0.75 NA Intergenic Intergenic -236396 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 134-69 chr7 36725136 36725373 + 0.75 NA promoter-TSS (NM_001177506) promoter-TSS (NM_001177506) -705 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 188.75-32 chr4 83897918 83898364 + 0.75 NA Intergenic L1ME4a|LINE|L1 362033 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 114-36 chr14 84265822 84266125 + 0.75 NA Intergenic L1PA16|LINE|L1 -1005959 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 142.5-3 chr1 152373130 152373501 + 0.75 NA Intergenic Intergenic -13309 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 187.75-46 chr6 168362768 168363136 + 0.75 NA Intergenic Intergenic -43175 NM_001286350 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 138-51 chr3 81533766 81534011 + 0.75 NA intron (NM_000158, intron 14 of 15) MLT1L|LTR|ERVL-MaLR 227757 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 139.25-73 chr7 28363412 28363800 + 0.75 NA intron (NM_182899, intron 1 of 9) L2c|LINE|L2 -48912 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 114.25-35 chr16 17873198 17873472 + 0.75 NA Intergenic HAL1|LINE|L1 -402375 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 117-61 chr4 56385884 56386249 + 0.75 NA intron (NM_001286672, intron 1 of 10) intron (NM_001286672, intron 1 of 10) 1425 NM_001323892 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 255.25-23 chr8 141720167 141720812 + 0.75 NA Intergenic Intergenic 65824 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 124.75-84 chr7 103753184 103753380 + 0.75 NA intron (NM_005045, intron 4 of 64) intron (NM_005045, intron 4 of 64) 236234 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 152.25-50 chr5 73164192 73164441 + 0.75 NA Intergenic Intergenic -8877 NM_153217 134288 Hs.508588 NM_153217 ENSG00000164325 TMEM174 - transmembrane protein 174 protein-coding 148-15 chr12 55183107 55183377 + 0.75 NA Intergenic Intergenic -37783 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 148-7 chr10 53700366 53700613 + 0.75 NA Intergenic Intergenic -785741 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 223.5-31 chr16 1975121 1975663 + 0.75 NA exon (NM_006453, exon 9 of 22) exon (NM_006453, exon 9 of 22) 3339 NM_006453 10607 Hs.513267 NM_006453 ENSG00000183751 TBL3 SAZD|UTP13 transducin beta like 3 protein-coding 250-34 chr9 36981578 36982187 + 0.75 NA intron (NM_001280554, intron 4 of 8) intron (NM_001280554, intron 4 of 8) 52386 NM_001280548 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 193.25-37 chr5 160559184 160559454 + 0.75 NA Intergenic Intergenic 73967 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 127.75-19 chr11 115918118 115918329 + 0.75 NA Intergenic Intergenic -158023 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 135-76 chr8 115858565 115858889 + 0.75 NA Intergenic L1ME4c|LINE|L1 -189752 NM_001282903 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 139-45 chr22 32491297 32491703 + 0.75 NA intron (NM_001257990, intron 6 of 8) intron (NM_001257990, intron 6 of 8) 16263 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 121-4 chr1 79593224 79593426 + 0.75 NA Intergenic Intergenic -586595 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 135.25-30 chr15 100793505 100793861 + 0.75 NA Intergenic THE1D-int|LTR|ERVL-MaLR -56069 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 153.75-50 chr3 11697599 11697954 + 0.75 NA intron (NM_001284390, intron 2 of 6) intron (NM_001284390, intron 2 of 6) 22763 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 132.25-30 chr14 24233197 24233540 + 0.75 NA promoter-TSS (NM_001199823) promoter-TSS (NM_001199823) 439 NM_001351026 51292 Hs.368855 NM_016576 ENSG00000100938 GMPR2 GMPR 2 guanosine monophosphate reductase 2 protein-coding 221.25-38 chr8 118812343 118812736 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy 139346 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 113-15 chr11 107658468 107658821 + 0.75 NA intron (NM_001308018, intron 12 of 12) intron (NM_001308018, intron 12 of 12) 53412 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 116.25-53 chr2 220720525 220720821 + 0.75 NA Intergenic Intergenic -814108 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 165.25-38 chr3 65114510 65114910 + 0.75 NA Intergenic Intergenic -426710 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 217.25-16 chr17 64704790 64705239 + 0.75 NA Intergenic L1ME3A|LINE|L1 -42707 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 183.5-2 chr1 39400344 39400704 + 0.75 NA intron (NM_012090, intron 52 of 92) AluJb|SINE|Alu -8549 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 122.25-78 chr5 45212292 45212499 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 403448 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 177.25-11 chr14 70212464 70212968 + 0.75 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) -23646 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 130.25-69 chr5 9560423 9560769 + 0.75 NA Intergenic Intergenic 11769 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 133.75-41 chr2 72476030 72476245 + 0.75 NA intron (NM_001321730, intron 16 of 21) L1M2|LINE|L1 -328275 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 120.75-41 chr18 48549453 48549645 + 0.75 NA intron (NM_001142397, intron 2 of 12).2 MLT1L|LTR|ERVL-MaLR 10518 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 183.5-38 chr2 129111011 129111271 + 0.75 NA Intergenic L1ME1|LINE|L1 162750 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 187-8 chr14 57546060 57546554 + 0.75 NA Intergenic ERVL-int|LTR|ERVL -52450 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 153.5-5 chr1 114899216 114899527 + 0.75 NA intron (NM_001282542, intron 16 of 30) MER61-int|LTR|ERV1 44508 NM_003176 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 130.75-12 chr11 96509664 96509883 + 0.75 NA intron (NR_135097, intron 1 of 3) intron (NR_135097, intron 1 of 3) 1348 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 160.75-17 chr12 125835149 125835496 + 0.75 NA Intergenic MIR3|SINE|MIR 148052 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 125.5-85 chr3 187531614 187531817 + 0.75 NA Intergenic L2c|LINE|L2 84669 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 176.5-63 chr3 175154703 175155021 + 0.75 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -39620 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 119.5-14 chr10 53866762 53867089 + 0.75 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -619305 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 175-59 chr8 129920052 129920345 + 0.75 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 19613 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 147-76 chr8 17727104 17727494 + 0.75 NA intron (NM_001363057, intron 3 of 14) MIRc|SINE|MIR -4724 NM_001166393 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 152.75-25 chr17 74746365 74746623 + 0.75 NA 3' UTR (NM_001163989, exon 9 of 9) 3' UTR (NM_001163989, exon 9 of 9) -2119 NR_037409 100500847 NR_037409 ENSG00000284186 MIR3615 mir-3615 microRNA 3615 ncRNA 195.75-44 chr5 62157014 62157338 + 0.75 NA Intergenic Intergenic -148986 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 122.25-58 chr20 7169507 7169777 + 0.75 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 84560 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 185.5-64 chr6 102468208 102468569 + 0.75 NA Intergenic Intergenic 1069403 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 113.25-67 chr2 38594166 38594483 + 0.75 NA intron (NM_138394, intron 1 of 12) L1MC4|LINE|L1 8604 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 113.25-25 chr11 122154111 122154405 + 0.75 NA intron (NR_137184, intron 1 of 1) intron (NR_137184, intron 1 of 1) -1950 NR_029515 406892 NR_029515 ENSG00000207994 MIR100 MIRN100|miR-100 microRNA 100 ncRNA 177-46 chr5 45954110 45954415 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -257882 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 148.75-8 chr11 45506783 45507131 + 0.75 NA Intergenic L1ME1|LINE|L1 135560 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 177.75-42 chr5 23580206 23580600 + 0.75 NA Intergenic Charlie9|DNA|hAT-Charlie 72748 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 121.25-76 chr8 34023665 34023879 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie -423666 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 174.25-20 chr12 42921993 42922295 + 0.75 NA Intergenic Intergenic 229928 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 114-60 chr3 183882845 183883220 + 0.75 NA intron (NM_001324437, intron 1 of 7) intron (NM_001324437, intron 1 of 7) 1848 NM_001037639 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 116-10 chr10 65870837 65871102 + 0.75 NA Intergenic L1MC3|LINE|L1 299544 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 118.5-78 chr4 46902404 46902646 + 0.75 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 6720 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 127.75-39 chr17 53784155 53784435 + 0.75 NA Intergenic L1PA8|LINE|L1 -38632 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 113.75-112 chr8 118422556 118422831 + 0.75 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -198308 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 134.5-17 chr11 84279741 84280004 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -6592 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 123.25-73 chr6 63697535 63697793 + 0.75 NA intron (NM_001370350, intron 5 of 14) L2a|LINE|L2 51138 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 143.5-106 chr8 141534627 141535080 + 0.75 NA Intergenic MIRb|SINE|MIR -27623 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 135.5-79 chr4 112990392 112990756 + 0.75 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -58840 NM_001354265 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 199.5-64 chrX 99930492 99930825 + 0.75 NA Intergenic Intergenic 479615 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 164-39 chr3 151516899 151517162 + 0.75 NA Intergenic L3|LINE|CR1 48965 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 175.25-3 chr1 191663946 191664248 + 0.75 NA Intergenic Intergenic -435599 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 113.25-14 chr10 76335461 76335739 + 0.75 NA intron (NM_001305581, intron 6 of 6) MER4B|LTR|ERV1 -552444 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 129.75-32 chr17 29659044 29659264 + 0.75 NA intron (NM_033389, intron 10 of 14) L1MC5a|LINE|L1 -37731 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 158-17 chr13 98606985 98607257 + 0.75 NA Intergenic L1ME1|LINE|L1 29866 NR_046542 100874069 Hs.594160 NR_046542 STK24-AS1 - STK24 antisense RNA 1 ncRNA 212.5-33 chr21 30666882 30667243 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 24198 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 135.75-93 chr7 52820588 52820872 + 0.75 NA Intergenic L1MA9|LINE|L1 -214903 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 121.75-63 chr4 73705348 73705655 + 0.75 NA Intergenic Intergenic -35068 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 136-69 chr8 118623019 118623300 + 0.75 NA intron (NR_038210, intron 2 of 4) MamTip1|DNA|hAT-Tip100 -1196 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 161.25-46 chr2 165185733 165186147 + 0.75 NA intron (NM_006922, intron 2 of 27) intron (NM_006922, intron 2 of 27) 18110 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 157-58 chr6 139115251 139115523 + 0.75 NA Intergenic Intergenic -19693 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 133.75-73 chr8 69799344 69799573 + 0.75 NA intron (NM_001146009, intron 1 of 7) intron (NM_001146009, intron 1 of 7) 33711 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 179.5-72 chr4 177299641 177299949 + 0.75 NA Intergenic Intergenic -10079 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 181-48 chr8 127979018 127979486 + 0.75 NA intron (NR_003367, intron 3 of 8) L2c|LINE|L2 18619 NR_031610 100302161 NR_031610 ENSG00000221771 MIR1205 MIRN1205|hsa-mir-1205 microRNA 1205 ncRNA 158.25-8 chr10 59490070 59490405 + 0.75 NA Intergenic L1MA5|LINE|L1 -127056 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 156.25-30 chr19 27909398 27909782 + 0.75 NA intron (NR_146735, intron 4 of 7) CpG -115650 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 131-30 chr2 60264031 60264298 + 0.75 NA Intergenic Intergenic 118872 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 168-53 chr5 27937119 27937575 + 0.75 NA Intergenic Intergenic 350318 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 148.5-80 chr5 78384509 78384885 + 0.75 NA intron (NM_001290229, intron 1 of 7) L1PB1|LINE|L1 24080 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 172.25-34 chr2 125065949 125066282 + 0.75 NA Intergenic L1ME4b|LINE|L1 1040828 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 119.5-106 chr6 62513212 62513400 + 0.75 NA Intergenic Intergenic -227079 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 146.5-99 chrX 72610543 72610832 + 0.75 NA intron (NM_002637, intron 22 of 31) L1MA4|LINE|L1 -37584 NM_001166420 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 137.75-44 chr2 26601343 26601624 + 0.75 NA intron (NM_001029881, intron 3 of 6) L1MC3|LINE|L1 38896 NM_001105519 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 162.75-70 chr8 28782460 28782814 + 0.75 NA intron (NR_026826, intron 9 of 14) AluJo|SINE|Alu 81136 NM_001440 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 136.25-5 chr1 112323474 112323845 + 0.75 NA Intergenic MIRb|SINE|MIR -72555 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 128-45 chr4 6429737 6430080 + 0.75 NA intron (NM_001206994, intron 2 of 9) intron (NM_001206994, intron 2 of 9) -8790 NM_001206996 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 128-4 chr10 78620500 78620863 + 0.75 NA Intergenic L1MB3|LINE|L1 353339 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 148-28 chr15 79482707 79482981 + 0.75 NA Intergenic L1MEc|LINE|L1 50328 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 235.5-53 chr7 108414606 108415082 + 0.75 NA intron (NM_001371132, intron 1 of 30) intron (NM_001371132, intron 1 of 30) 41553 NM_001193582 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 154.75-11 chr12 32221968 32222330 + 0.75 NA intron (NR_148725, intron 2 of 9) intron (NR_148725, intron 2 of 9) 115302 NM_001354188 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 122-30 chr19 31470398 31470702 + 0.75 NA Intergenic Intergenic -117639 NM_001278575 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 278.75-6 chr17 41943862 41944534 + 0.75 NA intron (NR_146622, intron 7 of 11) AluSp|SINE|Alu 13581 NM_031421 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 - tetratricopeptide repeat domain 25 protein-coding 121.75-54 chr22 27294294 27294628 + 0.75 NA Intergenic Intergenic -16190 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 114-34 chr14 65097309 65097637 + 0.75 NA intron (NR_073137, intron 1 of 3) intron (NR_073137, intron 1 of 3) 5044 NM_145112 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 118-82 chrX 84686015 84686328 + 0.75 NA Intergenic Intergenic -183718 NM_144657 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 182.25-56 chr8 56574014 56574480 + 0.75 NA Intergenic AluSq2|SINE|Alu -14424 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 120.25-71 chr8 67047857 67048161 + 0.75 NA intron (NM_006837, intron 6 of 7) AluJb|SINE|Alu 14124 NM_006837 10987 Hs.491912 NM_006837 ENSG00000121022 COPS5 CSN5|JAB1|MOV-34|SGN5 COP9 signalosome subunit 5 protein-coding 173.25-65 chr7 145833892 145834262 + 0.75 NA Intergenic Intergenic -940194 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 138-26 chr16 59467465 59467683 + 0.75 NA Intergenic Intergenic 287617 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 223.75-17 chr4 8466652 8467029 + 0.75 NA intron (NM_152544, intron 8 of 10) MIR3|SINE|MIR 26043 NM_001350233 152992 Hs.566191 NM_024950 ENSG00000155275 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog protein-coding 134.75-43 chr20 48252761 48253127 + 0.75 NA Intergenic L1MDa|LINE|L1 -106967 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 134-54 chr3 121624732 121624947 + 0.75 NA intron (NM_016298, intron 3 of 3) LTR33|LTR|ERVL 31460 NM_016298 51725 Hs.272564 NM_016298 ENSG00000163833 FBXO40 FBX40 F-box protein 40 protein-coding 176-41 chr7 6065999 6066262 + 0.75 NA Intergenic AluSg|SINE|Alu -6901 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 137-31 chr18 59350014 59350386 + 0.75 NA intron (NM_005570, intron 5 of 12) intron (NM_005570, intron 5 of 12) 9065 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 159-67 chr9 30589425 30589682 + 0.75 NA Intergenic Intergenic -181099 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 155.25-61 chr6 43441847 43442097 + 0.75 NA intron (NM_033450, intron 7 of 19) intron (NM_033450, intron 7 of 19) 7430 NR_106894 102466746 NR_106894 ENSG00000276770 MIR6780B hsa-mir-6780b microRNA 6780b ncRNA 144.5-92 chr5 120993774 120994148 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -328589 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 115.25-47 chr2 101442298 101442618 + 0.75 NA intron (NM_001367509, intron 4 of 13) L1MD2|LINE|L1 32654 NM_001145664 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 181.75-20 chr22 46379366 46379793 + 0.75 NA intron (NM_014246, intron 22 of 34) intron (NM_014246, intron 22 of 34) 43865 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 142-58 chr5 138059012 138059464 + 0.75 NA Intergenic AluSp|SINE|Alu -24654 NM_058244 7478 Hs.591274 NM_031933 ENSG00000061492 WNT8A WNT8D Wnt family member 8A protein-coding 123.25-82 chr9 130440262 130440620 + 0.75 NA Intergenic AluY|SINE|Alu -4266 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 183.5-5 chr1 73041037 73041524 + 0.75 NA Intergenic Intergenic -264890 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 152.25-13 chr11 39844016 39844358 + 0.75 NA Intergenic Intergenic 448943 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 149.25 chr1 76427493 76427721 + 0.75 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 351660 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 124.5-97 chr7 13596255 13596554 + 0.75 NA Intergenic L1MA10|LINE|L1 390110 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 126.25-92 chr8 120019645 120019963 + 0.75 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -105298 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 170.5-64 chr5 77155561 77155854 + 0.75 NA Intergenic MIR|SINE|MIR -24597 NM_001349752 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 170-36 chr4 35943780 35944068 + 0.75 NA Intergenic Intergenic 300015 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 126.75-83 chr6 69176141 69176393 + 0.75 NA intron (NM_001704, intron 17 of 31) L1PA16|LINE|L1 540985 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 231.5-26 chr21 29978239 29978602 + 0.75 NA Intergenic Intergenic -38368 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 197.75-25 chr20 46381718 46382180 + 0.75 NA intron (NM_133171, intron 10 of 21) intron (NM_133171, intron 10 of 21) -17491 NM_001281458 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 139-8 chr10 121449579 121449802 + 0.75 NA Intergenic Intergenic 81624 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 113.25-54 chr17 62886768 62887060 + 0.75 NA Intergenic Intergenic -57301 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 157.75-80 chr8 129107850 129108084 + 0.75 NA Intergenic Intergenic 133273 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 226.25-33 chr8 90005389 90005736 + 0.75 NA 5' UTR (NM_001330575, exon 2 of 12) 5' UTR (NM_001330575, exon 2 of 12) 4085 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 191.75-15 chr16 79681162 79681452 + 0.75 NA Intergenic AluSx|SINE|Alu -80570 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 151.25-58 chr8 108759952 108760261 + 0.75 NA intron (NR_136411, intron 1 of 3) AluSx3|SINE|Alu 27488 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 121-58 chr5 85194360 85194575 + 0.75 NA Intergenic Intergenic -809587 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 171.75-21 chr16 88364949 88365489 + 0.75 NA Intergenic Intergenic -62252 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 183.5-37 chr2 101262742 101263172 + 0.75 NA intron (NM_017546, intron 3 of 6) AluSz|SINE|Alu 10071 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 119.5-108 chr6 143849376 143849654 + 0.75 NA intron (NM_001329953, intron 3 of 10) MIRb|SINE|MIR 6177 NM_032860 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 116.5-35 chr13 112891391 112891560 + 0.75 NA Intergenic Intergenic 77163 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 203.25-28 chr2 56922908 56923289 + 0.75 NA Intergenic Intergenic -737328 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 161.25-57 chr4 72696894 72697324 + 0.75 NA Intergenic Intergenic -127888 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 127.5-59 chr2 52684645 52684978 + 0.75 NA Intergenic L1MA4A|LINE|L1 17804 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 184.25-14 chr16 89809954 89810413 + 0.75 NA intron (NM_001351830, intron 4 of 9) AluY|SINE|Alu 6464 NM_001286167 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH FA complementation group A protein-coding 123.5-6 chr1 105268221 105268522 + 0.75 NA Intergenic L1PA16|LINE|L1 350564 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 115.5-37 chr17 72818673 72818940 + 0.75 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -178334 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 227.25-3 chr1 109332517 109332924 + 0.75 NA intron (NM_001205228, intron 11 of 19) L1MA9|LINE|L1 -25709 NM_001010985 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 145.75-47 chr21 16024803 16025026 + 0.75 NA Intergenic Intergenic -45574 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 113.25-82 chr3 21475339 21475628 + 0.75 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) -67306 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 116.5-3 chr1 42822894 42823123 + 0.75 NA intron (NM_001017922, intron 1 of 11) Charlie1a|DNA|hAT-Charlie -2570 NM_018538 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 125-37 chr17 62057279 62057576 + 0.75 NA intron (NM_005121, intron 2 of 29) intron (NM_005121, intron 2 of 29) 7851 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 170.5-34 chr16 77938076 77938448 + 0.75 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -84286 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 239.5-2 chr1 201869399 201869808 + 0.75 NA exon (NM_018085, exon 17 of 24) exon (NM_018085, exon 17 of 24) 6230 NR_106797 102466724 NR_106797 ENSG00000277681 MIR6739 hsa-mir-6739 microRNA 6739 ncRNA 170.75-19 chr13 34140412 34140676 + 0.75 NA Intergenic MIRc|SINE|MIR -207499 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 129.25-54 chr3 115671025 115671247 + 0.75 NA intron (NM_001130064, intron 2 of 3) intron (NM_001130064, intron 2 of 3) 47626 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 176.5-51 chr2 207890347 207890846 + 0.75 NA intron (NM_001080475, intron 6 of 7) AluSz|SINE|Alu -120690 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 136-6 chr10 70468898 70469148 + 0.75 NA Intergenic Intergenic -9744 NM_014431 27143 Hs.202351 NM_014431 ENSG00000107719 PALD1 KIAA1274|PALD phosphatase domain containing paladin 1 protein-coding 160-41 chr6 165727842 165728098 + 0.75 NA Intergenic (GTTGT)n|Simple_repeat|Simple_repeat -65690 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 157.5-48 chr2 99714121 99714470 + 0.75 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -224278 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 137.25-39 chr18 6631230 6631470 + 0.75 NA Intergenic Intergenic -98366 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 185.5-6 chr1 178128292 178128676 + 0.75 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 34380 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 159.25-17 chr13 71148598 71148930 + 0.75 NA intron (NR_047699, intron 2 of 3) intron (NR_047699, intron 2 of 3) 133623 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 125-63 chr3 81106703 81106908 + 0.75 NA Intergenic Intergenic 112937 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 119.5-39 chr15 38168011 38168240 + 0.75 NA Intergenic L2c|LINE|L2 -84711 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 226.75-14 chr2 120724770 120725226 + 0.75 NA Intergenic L1MC5|LINE|L1 -10870 NM_001371271 159.25-4 chr10 44084612 44084842 + 0.75 NA Intergenic Intergenic 172325 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 151.75-13 chr11 45720443 45720808 + 0.75 NA Intergenic Intergenic -1683 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 143-6 chr10 76133165 76133533 + 0.75 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 350588 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 114-93 chr8 138789578 138789944 + 0.75 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 124280 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 145-21 chr15 61440636 61440864 + 0.75 NA Intergenic MIR|SINE|MIR -211448 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 114.25-32 chr15 50671091 50671455 + 0.75 NA intron (NR_149154, intron 1 of 37) L1MA8|LINE|L1 15524 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 181-16 chr11 77445656 77446102 + 0.75 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 28184 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 117.25-45 chr2 67905639 67905819 + 0.75 NA Intergenic Intergenic -80167 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 147-20 chr12 79325308 79325779 + 0.75 NA intron (NM_001291901, intron 7 of 9) intron (NM_001291901, intron 7 of 9) -93714 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 157.75-24 chr14 59981607 59981892 + 0.75 NA intron (NR_075071, intron 15 of 32) intron (NR_075071, intron 15 of 32) 62036 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 125.5-77 chr3 37584264 37584552 + 0.75 NA intron (NM_002207, intron 15 of 27) MLT1H|LTR|ERVL-MaLR 132267 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 128.25-2 chr1 53547568 53547945 + 0.75 NA intron (NM_147193, intron 3 of 9) intron (NM_147193, intron 3 of 9) 88357 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 143.75-18 chr11 36226849 36227192 + 0.75 NA intron (NM_001304264, intron 4 of 5) intron (NM_001304264, intron 4 of 5) 62404 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 160.25-30 chr19 7137288 7137543 + 0.75 NA intron (NM_001079817, intron 12 of 20) intron (NM_001079817, intron 12 of 20) 67712 NM_024341 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 169.25-8 chr10 116335041 116335479 + 0.75 NA intron (NM_198515, intron 3 of 8) intron (NM_198515, intron 3 of 8) 10812 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 119-63 chr6 36928682 36929023 + 0.75 NA 3' UTR (NM_001286637, exon 9 of 9) 3' UTR (NM_001286637, exon 9 of 9) -19411 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 194.75-23 chr2 179402183 179402557 + 0.75 NA Intergenic HAL1ME|LINE|L1 -137538 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 168.75-53 chr7 7296274 7296624 + 0.75 NA Intergenic Intergenic 41295 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 177-18 chr17 47640657 47641108 + 0.75 NA Intergenic L1ME4c|LINE|L1 -9037 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 126.25-6 chr1 210015702 210015887 + 0.75 NA intron (NM_153262, intron 3 of 7) intron (NM_153262, intron 3 of 7) 77577 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 145-26 chr16 2759117 2759503 + 0.75 NA intron (NM_016333, intron 7 of 14) intron (NM_016333, intron 7 of 14) 6672 NM_016333 23524 Hs.433343 NM_016333 ENSG00000167978 SRRM2 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 126.75-80 chr5 133209261 133209501 + 0.75 NA intron (NM_015082, intron 14 of 15) MER105|DNA|hAT-Charlie 157368 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 142-43 chr3 68003626 68003866 + 0.75 NA promoter-TSS (NM_213609) promoter-TSS (NM_213609) -501 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 168-28 chr14 64485749 64486011 + 0.75 NA TTS (NM_001354687) TTS (NM_001354687) 12112 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 147.25-55 chr5 111875007 111875313 + 0.75 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -37348 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 184.75-58 chr8 121351722 121352055 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -287458 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 113.75-16 chr10 38528919 38529129 + 0.75 NA Intergenic Intergenic 100878 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 164.25-33 chr2 127935843 127936166 + 0.75 NA Intergenic L1MB4|LINE|L1 -50064 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 169.25-23 chr19 36465655 36466032 + 0.75 NA intron (NM_001145345, intron 4 of 4) intron (NM_001145345, intron 4 of 4) 23592 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 197.25-13 chr11 16598687 16599000 + 0.75 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -122455 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 135-7 chr1 178456853 178457081 + 0.75 NA intron (NM_004841, intron 11 of 15) intron (NM_004841, intron 11 of 15) -56142 NM_001170724 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 181.5-49 chr4 103569664 103570069 + 0.75 NA Intergenic Intergenic 144824 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 130-31 chr19 50732856 50733099 + 0.75 NA Intergenic L1M5|LINE|L1 9613 NM_002975 6320 Hs.512680 NM_002975 ENSG00000105472 CLEC11A CLECSF3|LSLCL|P47|SCGF C-type lectin domain containing 11A protein-coding 184-6 chr10 22865482 22865807 + 0.75 NA Intergenic AluJr|SINE|Alu -62380 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 148.75-33 chr2 44233914 44234214 + 0.75 NA 3' UTR (NM_177968, exon 6 of 6) 3' UTR (NM_177968, exon 6 of 6) -41416 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 243.5-9 chr14 65711514 65712070 + 0.75 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 240690 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 129-20 chr14 45216852 45217072 + 0.75 NA intron (NM_018353, intron 13 of 16) intron (NM_018353, intron 13 of 16) 36240 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 212.25-19 chr17 82186151 82186652 + 0.75 NA intron (NM_001367828, intron 6 of 16) intron (NM_001367828, intron 6 of 16) 26441 NM_001316321 284001 Hs.631724 NM_152675 ENSG00000176155 CCDC57 - coiled-coil domain containing 57 protein-coding 170.5-71 chr6 28237598 28237878 + 0.75 NA Intergenic L1MEd|LINE|L1 12463 NM_001199480 7746 Hs.100921 NM_006299 ENSG00000137185 ZSCAN9 PRD51|ZNF193 zinc finger and SCAN domain containing 9 protein-coding 112.75-30 chr13 43229124 43229442 + 0.75 NA intron (NM_001347966, intron 16 of 17) THE1B|LTR|ERVL-MaLR 116118 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 118.25-80 chr5 78576539 78576745 + 0.75 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 72130 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 195.5-92 chr9 70438604 70438975 + 0.75 NA Intergenic L2b|LINE|L2 -24132 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 155-61 chr8 83339733 83340062 + 0.75 NA Intergenic Intergenic -63861 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 178-51 chr8 29587845 29588183 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 160095 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 124.25-57 chr20 56496909 56497176 + 0.75 NA exon (NM_080615, exon 5 of 7) exon (NM_080615, exon 5 of 7) -27687 NM_001012971 200232 Hs.504907 NM_001012971 ENSG00000124103 FAM209A C20orf106|dJ1153D9.3 family with sequence similarity 209 member A protein-coding 176.5-72 chr5 55523307 55523670 + 0.75 NA intron (NR_103485, intron 1 of 6) MIR|SINE|MIR 11054 NR_001575 379013 Hs.745164 NR_001575 RNF138P1 - ring finger protein 138 pseudogene 1 pseudo 132-72 chr7 36884242 36884449 + 0.75 NA intron (NR_038120, intron 2 of 5) intron (NR_038120, intron 2 of 5) 35087 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 142-30 chr2 180738794 180739144 + 0.75 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 46865 NR_104320 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 145.75-41 chr2 179269631 179269885 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -4926 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 188.25-31 chr3 6885664 6885993 + 0.75 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) 8189 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 154-36 chr2 27158082 27158326 + 0.75 NA Intergenic Charlie1b|DNA|hAT-Charlie 9200 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 125.25-50 chr3 4375303 4375675 + 0.75 NA intron (NM_001164675, intron 7 of 7) MER5B|DNA|hAT-Charlie 72185 NM_001320677 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 125.5-6 chr1 116158794 116159023 + 0.75 NA Intergenic L1MD|LINE|L1 47153 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 139.5-71 chr4 126908047 126908395 + 0.75 NA Intergenic AluSx|SINE|Alu -724736 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 213-48 chr8 85298386 85298919 + 0.75 NA Intergenic Intergenic 43062 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 175.25-27 chr2 67907472 67907896 + 0.75 NA Intergenic MLT1G3|LTR|ERVL-MaLR -82122 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 138.75-45 chr3 7799554 7799794 + 0.75 NA Intergenic Intergenic 216633 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 180.25-70 chr9 85610395 85610767 + 0.75 NA intron (NM_015239, intron 17 of 25) intron (NM_015239, intron 17 of 25) 131448 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 145.5-103 chrX 67720319 67720692 + 0.75 NA intron (NM_001011645, intron 6 of 8) intron (NM_001011645, intron 6 of 8) 175882 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 116.75-19 chr12 116200880 116201153 + 0.75 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -52362 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 146.25-62 chr6 67928603 67928893 + 0.75 NA Intergenic Intergenic -126603 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 144.5-45 chr15 100101820 100102062 + 0.75 NA intron (NM_139057, intron 14 of 21) intron (NM_139057, intron 14 of 21) 240034 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 135.75 chr1 42688891 42689113 + 0.75 NA intron (NM_004559, intron 2 of 7) Tigger2b_Pri|DNA|TcMar-Tigger 5866 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 121.75-60 chr3 189038153 189038397 + 0.75 NA Intergenic Intergenic -90636 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 162.25-25 chr22 16850442 16850748 + 0.75 NA Intergenic MER101-int|LTR|ERV1 23121 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 143.25-11 chr11 14013926 14014275 + 0.75 NA intron (NM_006108, intron 2 of 15) intron (NM_006108, intron 2 of 15) 51377 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 113.25-17 chr11 42352866 42353059 + 0.75 NA Intergenic Intergenic -99272 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 133.25-73 chr7 31061348 31061692 + 0.75 NA intron (NM_001199637, intron 1 of 13) intron (NM_001199637, intron 1 of 13) 9059 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 143.75-66 chr4 170481858 170482143 + 0.75 NA Intergenic Intergenic 255409 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 169.75-20 chr13 44861054 44861491 + 0.75 NA Intergenic AluY|SINE|Alu -51642 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 133.5-111 chr8 49821212 49821494 + 0.75 NA Intergenic Intergenic -88443 NM_001287813 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 163.5-18 chr11 95532275 95532594 + 0.75 NA Intergenic Intergenic 257348 NM_001330357 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 160.25-31 chr2 21658508 21658788 + 0.75 NA Intergenic Intergenic 52004 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 174.25-40 chr3 108568825 108569171 + 0.75 NA intron (NM_020890, intron 9 of 20) intron (NM_020890, intron 9 of 20) 20440 NM_020890 57650 Hs.591308 NM_020890 ENSG00000163507 CIP2A KIAA1524|p90 cell proliferation regulating inhibitor of protein phosphatase 2A protein-coding 120.75-3 chr1 204168839 204169150 + 0.75 NA Intergenic LOR1-int|LTR|ERV1 -2657 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 112.75-80 chr7 9763727 9763974 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 129580 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 118.75-5 chr1 84021380 84021616 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -22366 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 115.75-34 chr17 21094302 21094499 + 0.75 NA Intergenic MIR|SINE|MIR 18844 NR_110895 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 125.25-51 chr3 13241581 13241834 + 0.75 NA Intergenic Intergenic -168278 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 139.5-53 chr22 24335698 24336061 + 0.75 NA intron (NM_015330, intron 9 of 16) intron (NM_015330, intron 9 of 16) -6229 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 149.25-39 chr21 37078723 37079092 + 0.75 NA intron (NM_001353936, intron 1 of 36) L1ME3F|LINE|L1 -4040 NM_003316 7267 Hs.368214 NM_003316 ENSG00000182670 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 157.5-24 chr14 32873386 32873759 + 0.75 NA Intergenic L1PB1|LINE|L1 -65307 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 117.25-15 chr10 66371750 66371941 + 0.75 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -554191 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 149.5-65 chr3 38945368 38945799 + 0.75 NA intron (NM_014139, intron 2 of 25) LTR16A1|LTR|ERVL 4978 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 154.5-66 chr6 96380258 96380516 + 0.75 NA Intergenic Intergenic -141419 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 119-40 chr2 100573300 100573491 + 0.75 NA intron (NM_024065, intron 5 of 5) AluSq2|SINE|Alu 10402 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 122-27 chr15 81571091 81571442 + 0.75 NA Intergenic L2a|LINE|L2 -197053 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 237.75-26 chr2 169128326 169128731 + 0.75 NA 3' UTR (NM_004525, exon 79 of 79) 3' UTR (NM_004525, exon 79 of 79) 47421 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 198.5-38 chr4 162487333 162487789 + 0.75 NA Intergenic L1M5|LINE|L1 -323527 NM_001128427 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 149-31 chr20 55195910 55196208 + 0.75 NA Intergenic L1PA17|LINE|L1 -226984 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 201-12 chr12 24399691 24400088 + 0.75 NA intron (NM_152989, intron 2 of 17) intron (NM_152989, intron 2 of 17) 162602 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 171.5-67 chr5 25324373 25324794 + 0.75 NA Intergenic Intergenic 133630 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 143.75-48 chr2 83865706 83866009 + 0.75 NA Intergenic Intergenic 343043 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 255.5-21 chr4 30819107 30819663 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 99016 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 152.25-42 chr3 189469330 189469766 + 0.75 NA Intergenic Intergenic -127198 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 197.75-47 chr7 107962388 107962822 + 0.75 NA intron (NM_002291, intron 15 of 33) AluSx|SINE|Alu 40556 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 197-24 chr2 34857530 34857847 + 0.75 NA Intergenic 5S|rRNA|rRNA 180131 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 133.25-15 chr11 67318468 67318702 + 0.75 NA intron (NR_024469, intron 1 of 3) intron (NR_024469, intron 1 of 3) 746 NR_024469 100130987 Hs.664585 NR_024469 LOC100130987 - uncharacterized LOC100130987 ncRNA 168.5-34 chr16 5792370 5792933 + 0.75 NA Intergenic AluSq|SINE|Alu 160184 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 154.75-9 chr11 104375834 104376099 + 0.75 NA Intergenic Intergenic -211819 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 166.5-83 chr5 63537760 63538212 + 0.75 NA Intergenic Intergenic 424306 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 158.75 chr1 60055152 60055638 + 0.75 NA exon (NM_152377, exon 3 of 12) exon (NM_152377, exon 3 of 12) 18375 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 176.75-50 chr7 107877922 107878210 + 0.75 NA Intergenic MIRb|SINE|MIR -13041 NM_001289752 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 184-4 chr1 247189010 247189287 + 0.75 NA Intergenic AluY|SINE|Alu 12912 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 222-44 chr8 105980758 105981283 + 0.75 NA intron (NR_125797, intron 1 of 4) AluSx|SINE|Alu 79483 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 212.75-3 chr1 190928120 190928570 + 0.75 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR 300153 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 180-35 chr19 45309672 45310050 + 0.75 NA intron (NM_001824, intron 5 of 7) AluSz|SINE|Alu 13014 NM_001824 1158 Hs.334347 NM_001824 ENSG00000104879 CKM CKMM|CPK-M|M-CK creatine kinase, M-type protein-coding 168.25-70 chrX 27803463 27803758 + 0.75 NA Intergenic L1ME1|LINE|L1 -4380 NM_182506 139422 Hs.447363 NM_182506 ENSG00000177689 MAGEB10 - MAGE family member B10 protein-coding 129-19 chr13 100605217 100605553 + 0.75 NA intron (NM_001079669, intron 17 of 17) intron (NM_001079669, intron 17 of 17) -16593 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 203.75-40 chr6 162804659 162805128 + 0.75 NA intron (NM_001080379, intron 1 of 4) Tigger3a|DNA|TcMar-Tigger 76923 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 118-78 chr9 464289 464646 + 0.75 NA 3' UTR (NM_203447, exon 48 of 48) 3' UTR (NM_203447, exon 48 of 48) -5824 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 178.5-45 chr3 7655332 7655737 + 0.75 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -120250 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 183.5-56 chr4 97727286 97727708 + 0.75 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 360571 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 130 chr1 40273941 40274244 + 0.75 NA intron (NM_005857, intron 6 of 9) MIRb|SINE|MIR 15856 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 142.25-36 chr2 79509271 79509526 + 0.75 NA Intergenic L1MC1|LINE|L1 -3536 NM_001164883 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 184.5-33 chr17 59398336 59398825 + 0.75 NA 3' UTR (NM_001005404, exon 5 of 5) 3' UTR (NM_001005404, exon 5 of 5) 32497 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 127-18 chr11 133285834 133286245 + 0.75 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 246462 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 164.25-60 chr8 129565502 129565952 + 0.75 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 9291 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 145-69 chr9 37580669 37580973 + 0.75 NA Intergenic MLT1N2|LTR|ERVL-MaLR -4441 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 159.75-11 chr11 84064100 84064330 + 0.75 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 209065 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 118.25-22 chr12 62895040 62895241 + 0.75 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 40010 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 129-73 chr7 80649119 80649488 + 0.75 NA intron (NM_001371079, intron 3 of 13) intron (NM_001371079, intron 3 of 13) 2650 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 144.25-73 chr7 45314431 45314727 + 0.75 NA Intergenic L1MDa|LINE|L1 156788 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 206.75-22 chr4 65093555 65094078 + 0.75 NA Intergenic Intergenic -89316 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 129.25-61 chr5 26520186 26520482 + 0.75 NA Intergenic L1ME1|LINE|L1 518252 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 113.25-28 chr12 42338443 42338685 + 0.75 NA intron (NM_001364830, intron 2 of 6) intron (NM_001364830, intron 2 of 6) 6766 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 193.25 chr1 42289081 42289532 + 0.75 NA intron (NM_001198850, intron 2 of 12) MIRb|SINE|MIR 45649 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 113.75-43 chr16 80948202 80948439 + 0.75 NA Intergenic Intergenic 49356 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 129.5-78 chr5 120642302 120642549 + 0.75 NA intron (NM_001308088, intron 3 of 3) intron (NM_001308088, intron 3 of 3) 110961 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 159.75-59 chr7 2203467 2203938 + 0.75 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) 29243 NM_001304523 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 213-21 chr16 78348323 78348696 + 0.75 NA intron (NM_001291997, intron 4 of 7) AluJb|SINE|Alu 248855 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 137-33 chr19 4547106 4547426 + 0.75 NA intron (NM_032108, intron 14 of 16) AluJo|SINE|Alu -7230 NM_052972 116844 Hs.655559 NM_052972 ENSG00000171236 LRG1 HMFT1766|LRG leucine rich alpha-2-glycoprotein 1 protein-coding 127.75-80 chr6 51206420 51206767 + 0.75 NA Intergenic Intergenic 387722 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 227.5-54 chr8 88523293 88523830 + 0.75 NA Intergenic Intergenic -196078 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 167.5-23 chr15 50723793 50724227 + 0.75 NA intron (NM_032802, intron 12 of 14) intron (NM_032802, intron 12 of 14) -37213 NM_001301212 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 177-56 chr8 35273304 35273626 + 0.75 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 37990 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 203.75-39 chr6 127553214 127553687 + 0.75 NA Intergenic Intergenic -23724 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 224.25-9 chr14 25150915 25151408 + 0.75 NA Intergenic Intergenic -100864 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 122-4 chr1 103236103 103236414 + 0.75 NA Intergenic THE1A-int|LTR|ERVL-MaLR -127736 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 134.25-44 chr20 51782252 51782504 + 0.75 NA TTS (NM_020436) TTS (NM_020436) -13988 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 135-17 chr11 48157568 48157832 + 0.75 NA intron (NM_002843, intron 21 of 24) L2a|LINE|L2 -59110 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 114.5-114 chr9 129810983 129811245 + 0.75 NA non-coding (NR_134113, exon 5 of 5) non-coding (NR_134113, exon 5 of 5) 7930 NR_134113 27348 Hs.252682 NM_014506 ENSG00000136816 TOR1B DQ1 torsin family 1 member B protein-coding 132.5-55 chr2 177262559 177262836 + 0.75 NA intron (NM_001313903, intron 1 of 4) intron (NM_001313903, intron 1 of 4) 1434 NM_001145413 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|IMDDHH|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 177-52 chr7 30398438 30398883 + 0.75 NA intron (NR_108081, intron 1 of 2) intron (NR_108081, intron 1 of 2) 7775 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 145.75-31 chr2 8227663 8227974 + 0.75 NA intron (NR_152741, intron 9 of 9) MER99|DNA|hAT? 100601 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 152-18 chr11 83958197 83958463 + 0.75 NA intron (NM_001142699, intron 14 of 27) L4_A_Mam|LINE|RTE-X -275905 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 163.5-95 chrX 151833642 151833920 + 0.75 NA Intergenic L1MC1|LINE|L1 77302 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 163.25-23 chr13 76482641 76483040 + 0.75 NA Intergenic Intergenic 403565 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 208.75-6 chr10 69490085 69490602 + 0.75 NA intron (NM_012339, intron 3 of 7) MER2|DNA|TcMar-Tigger 38876 NM_001351263 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 116.25-73 chr5 78370563 78370782 + 0.75 NA intron (NM_001290229, intron 1 of 7) L1M4|LINE|L1 10055 NM_004866 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 168.5-62 chr5 125495544 125495871 + 0.75 NA intron (NR_109887, intron 1 of 3) L1MEg|LINE|L1 2446 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 117.25-37 chr19 34634448 34634750 + 0.75 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) -11274 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 115-44 chr20 24048519 24048674 + 0.75 NA Intergenic Intergenic -59817 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 154.25-45 chr3 19282451 19282858 + 0.75 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 32277 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 137.25-19 chr11 116623001 116623277 + 0.75 NA Intergenic MLT2B4|LTR|ERVL -16283 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 128.75-61 chr3 113980454 113980710 + 0.75 NA intron (NR_148531, intron 12 of 14) intron (NR_148531, intron 12 of 14) 32569 NR_135271 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 129-25 chr15 44068399 44068715 + 0.75 NA intron (NM_032892, intron 1 of 13) L1MB7|LINE|L1 125889 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 122-24 chr15 40142246 40142455 + 0.75 NA Intergenic L1MEg|LINE|L1 -18659 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 187.5-34 chr2 42974535 42974880 + 0.75 NA Intergenic Intergenic 64836 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 217-33 chr8 127414060 127414525 + 0.75 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -1533 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 125.75-52 chr3 168566359 168566618 + 0.75 NA intron (NR_021485, intron 4 of 15) MER57A-int|LTR|ERV1 14634 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 133.5-73 chr4 11349702 11349903 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -19025 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 137.5-98 chr5 172422765 172423029 + 0.75 NA intron (NM_001017995, intron 1 of 12) intron (NM_001017995, intron 1 of 12) 31626 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 125-14 chr10 64580638 64580847 + 0.75 NA Intergenic Intergenic -244786 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 138-37 chr2 77630652 77630988 + 0.75 NA Intergenic L1MB7|LINE|L1 -108387 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 234.75-5 chr11 16601638 16602223 + 0.75 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -125542 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 124-50 chr4 167818045 167818258 + 0.75 NA Intergenic Intergenic -274386 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 134.5-3 chr1 110796918 110797187 + 0.75 NA Intergenic L1PA16|LINE|L1 -74147 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 113.25-41 chr14 70679980 70680234 + 0.75 NA Intergenic L1MB7|LINE|L1 -18591 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 167.5-66 chr5 61217683 61218064 + 0.75 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) 47056 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 156.75-56 chr20 31190980 31191370 + 0.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -66489 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 162.5-46 chr2 213383169 213383408 + 0.75 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 98824 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 170.5-53 chr4 110784494 110784806 + 0.75 NA Intergenic Intergenic 75997 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 126-16 chr11 10079889 10080099 + 0.75 NA intron (NM_030962, intron 2 of 39) AluSq|SINE|Alu 214213 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 156.5-22 chr14 62457455 62457713 + 0.75 NA Intergenic L1MD2|LINE|L1 -317611 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 205.75-42 chr8 122988315 122988745 + 0.75 NA Intergenic Intergenic 37242 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 119-32 chr17 69426602 69426907 + 0.75 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 12057 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 228.25-34 chr7 89427735 89428193 + 0.75 NA Intergenic Intergenic -632227 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 124.75-71 chr5 173459003 173459275 + 0.75 NA Intergenic L1MB3|LINE|L1 111684 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 188.25-27 chr20 55113749 55114088 + 0.75 NA Intergenic Intergenic -309125 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 135.75-84 chr6 28335288 28335598 + 0.75 NA intron (NM_001243242, intron 1 of 3) LTR25|LTR|ERV1 691 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 139.5-27 chr13 101511526 101511867 + 0.75 NA intron (NM_001271756, intron 1 of 9) MLT1E1|LTR|ERVL-MaLR 21744 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 127-2 chr1 51548390 51548750 + 0.75 NA Intergenic AluJb|SINE|Alu -29304 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 172.75-16 chr18 12870849 12871169 + 0.75 NA intron (NM_080423, intron 1 of 8) L1ME4b|LINE|L1 13228 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 146.75-15 chr14 53769764 53770030 + 0.75 NA Intergenic Intergenic 178587 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 136.75-19 chr11 65265841 65266146 + 0.75 NA intron (NM_002689, intron 1 of 17) L2a|LINE|L2 4031 NM_002689 23649 Hs.201897 NM_002689 ENSG00000014138 POLA2 - DNA polymerase alpha 2, accessory subunit protein-coding 169.5-10 chr10 75190093 75190480 + 0.75 NA Intergenic MIR|SINE|MIR -19868 NM_001324088 7417 Hs.355927 NM_003375 ENSG00000165637 VDAC2 POR voltage dependent anion channel 2 protein-coding 125.5-44 chr14 56357878 56358241 + 0.75 NA Intergenic Intergenic -156272 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 201.5-62 chr8 80971676 80972029 + 0.75 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -97071 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 172.5-36 chr2 195188463 195188919 + 0.75 NA Intergenic Intergenic 458096 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 116.25-54 chr20 13880174 13880464 + 0.75 NA intron (NM_001363752, intron 9 of 16) intron (NM_001363752, intron 9 of 16) 95291 NR_147980 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 187-40 chr4 6009334 6009797 + 0.75 NA intron (NM_001364689, intron 2 of 11) intron (NM_001364689, intron 2 of 11) 8981 NM_001364689 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 181.25-13 chr13 97170232 97170682 + 0.75 NA Intergenic LTR8A|LTR|ERV1 9165 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 236-6 chr11 21781474 21782012 + 0.75 NA Intergenic Intergenic -411342 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 118.25-92 chr6 106224071 106224251 + 0.75 NA intron (NR_104402, intron 4 of 5) intron (NR_104402, intron 4 of 5) 92105 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 142-5 chr1 172178640 172178882 + 0.75 NA intron (NR_146559, intron 15 of 20) L2|LINE|L2 -33926 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 136.25-48 chr20 59152447 59152687 + 0.75 NA Intergenic Intergenic -38453 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 117.5-74 chr5 34870415 34870618 + 0.75 NA intron (NM_001317949, intron 8 of 10) L1MD|LINE|L1 31135 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 173.5-41 chr2 32119311 32119601 + 0.75 NA intron (NM_001363875, intron 6 of 15) intron (NM_001363875, intron 6 of 15) -46385 NM_001193514 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 164.25-44 chr3 31966415 31966694 + 0.75 NA intron (NM_001174060, intron 1 of 10) L1MD|LINE|L1 -15196 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 177.75-48 chr6 34975577 34975884 + 0.75 NA intron (NM_015245, intron 3 of 23) AluJo|SINE|Alu 86475 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 145.25-46 chr2 218386613 218386913 + 0.75 NA intron (NM_000578, intron 5 of 14) intron (NM_000578, intron 5 of 14) 4490 NM_000578 6556 Hs.591607 NM_000578 ENSG00000018280 SLC11A1 LSH|NRAMP|NRAMP1 solute carrier family 11 member 1 protein-coding 165.5-21 chr12 115419717 115420043 + 0.75 NA Intergenic L1ME3A|LINE|L1 728774 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 218.25-13 chr12 64804715 64805232 + 0.75 NA intron (NM_001330188, intron 3 of 13) AluSq|SINE|Alu -19674 NM_001330186 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 159.75-21 chr15 41034596 41034840 + 0.75 NA intron (NM_017553, intron 24 of 35) intron (NM_017553, intron 24 of 35) 81247 NM_001142776 79094 Hs.155569 NM_024111 ENSG00000128965 CHAC1 - ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding 117.25-34 chr17 47122326 47122529 + 0.75 NA intron (NM_001256, intron 18 of 18) intron (NM_001256, intron 18 of 18) 66868 NM_001353035 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 166.75-33 chr2 102548440 102548925 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -70871 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 184.75-12 chr10 94284476 94284854 + 0.75 NA intron (NM_001165979, intron 20 of 31) L2c|LINE|L2 2405 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 205-11 chr12 130114865 130115243 + 0.75 NA Intergenic Intergenic 43719 NR_146538 105370078 NR_146538 LINC02419 - long intergenic non-protein coding RNA 2419 ncRNA 114.25-26 chr12 41269568 41269757 + 0.75 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 81342 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 121.75-44 chr2 152991487 152991689 + 0.75 NA Intergenic Intergenic 272951 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 135.5-43 chr16 78687628 78687892 + 0.75 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 588106 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 147.5-58 chr3 34574410 34574737 + 0.75 NA Intergenic Intergenic 775943 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 114.25-99 chr7 104516509 104516801 + 0.75 NA intron (NM_199000, intron 1 of 2) L1PA13|LINE|L1 187999 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 150.25-69 chr7 51312706 51313011 + 0.75 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 3951 NM_001346443 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 136-70 chr8 139054706 139055026 + 0.75 NA Intergenic Intergenic -140825 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 181-13 chr11 36118556 36119038 + 0.75 NA intron (NM_001304263, intron 3 of 4) L1MB8|LINE|L1 -40896 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 139.25-36 chr15 101318676 101318869 + 0.75 NA intron (NM_002570, intron 18 of 21) intron (NM_002570, intron 18 of 21) -9468 NR_045387 100507472 Hs.498494 NR_045387 LOC100507472 - uncharacterized LOC100507472 ncRNA 122.25-32 chr16 75726652 75727010 + 0.75 NA promoter-TSS (NM_001355613) promoter-TSS (NM_001355613) -341 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 160-28 chr21 29829650 29829900 + 0.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 81600 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 165.25-6 chr1 203705093 203705386 + 0.75 NA intron (NM_001001396, intron 8 of 21) intron (NM_001001396, intron 8 of 21) -24342 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 140.75-3 chr1 81145358 81145615 + 0.75 NA Intergenic Intergenic -160706 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 124.5-29 chr13 99879710 99879979 + 0.75 NA intron (NR_104592, intron 7 of 9) intron (NR_104592, intron 7 of 9) 77321 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 170.75-10 chr1 241554198 241554623 + 0.75 NA intron (NM_003679, intron 4 of 14) AluSz|SINE|Alu 22032 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 124.5-70 chr3 106963698 106964057 + 0.75 NA Intergenic Intergenic 276761 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 190.75-30 chr2 52123395 52123653 + 0.75 NA intron (NR_135237, intron 7 of 10) L1ME1|LINE|L1 -247124 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 175-20 chr19 53280240 53280549 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -1896 NR_046365 646508 Hs.574588 NM_001195187 ENSG00000189348 FAM90A27P - family with sequence similarity 90 member A27, pseudogene pseudo 183.25-55 chr9 10146275 10146628 + 0.75 NA intron (NM_002839, intron 3 of 45) L2a|LINE|L2 347059 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 121.75-48 chr20 41417315 41417609 + 0.75 NA intron (NM_032221, intron 31 of 36) intron (NM_032221, intron 31 of 36) -50644 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 131.25-8 chr1 118158281 118158590 + 0.75 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 26793 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 146-61 chr8 105516860 105517266 + 0.75 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 197520 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 137.75-64 chr4 150941471 150941787 + 0.75 NA intron (NM_001367550, intron 2 of 56) AluSq2|SINE|Alu 73638 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 166-42 chr3 174370519 174370854 + 0.75 NA Intergenic L1MA4|LINE|L1 -449890 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 122-50 chr3 135259698 135259938 + 0.75 NA 3' UTR (NM_004441, exon 16 of 16) 3' UTR (NM_004441, exon 16 of 16) 464558 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 203.5-32 chr3 131812511 131813037 + 0.75 NA intron (NM_130808, intron 2 of 15) L2b|LINE|L2 173157 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 124.75-7 chr1 117863797 117864013 + 0.75 NA 3' UTR (NM_017686, exon 14 of 14) 3' UTR (NM_017686, exon 14 of 14) 65716 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 180.75-3 chr1 44736946 44737312 + 0.75 NA Intergenic L2a|LINE|L2 -2708 NM_006845 11004 Hs.720061 NM_006845 ENSG00000142945 KIF2C CT139|KNSL6|MCAK kinesin family member 2C protein-coding 136-59 chr6 108250360 108250617 + 0.75 NA intron (NM_001300929, intron 1 of 3) intron (NM_001300929, intron 1 of 3) 10552 NM_152827 8724 Hs.12102 NM_003795 ENSG00000112335 SNX3 Grd19|MCOPS8|SDP3 sorting nexin 3 protein-coding 123.75-86 chr5 21756148 21756438 + 0.75 NA intron (NM_004061, intron 13 of 14) intron (NM_004061, intron 13 of 14) -128161 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 141.25-58 chr5 18748276 18748562 + 0.75 NA Intergenic HERVL-int|LTR|ERVL 941145 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 172.75-4 chr1 225535149 225535405 + 0.75 NA intron (NM_001008493, intron 3 of 14) intron (NM_001008493, intron 3 of 14) -106422 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 126-68 chr5 31371384 31371745 + 0.75 NA Intergenic MamRep605|LTR?|LTR? 160529 NM_001100412 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 139.75-47 chr2 202129461 202129781 + 0.75 NA intron (NM_001277372, intron 12 of 23) intron (NM_001277372, intron 12 of 23) -12563 NR_135244 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 152.5-3 chr1 99494210 99494518 + 0.75 NA Intergenic L2b|LINE|L2 -6560 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 221-41 chr5 166729749 166730269 + 0.75 NA Intergenic Intergenic 196361 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 116.5-55 chr19 36434511 36434767 + 0.75 NA Intergenic L1ME3B|LINE|L1 13465 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 138.5-26 chr13 41021358 41021719 + 0.75 NA intron (NM_001370329, intron 1 of 9) MIR|SINE|MIR -2222 NM_172373 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 113.5-126 chr9 7067981 7068288 + 0.75 NA intron (NM_001353997, intron 17 of 22) intron (NM_001353997, intron 17 of 22) 310784 NM_015061 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 180.75-39 chr20 37576069 37576403 + 0.75 NA Intergenic Intergenic 46883 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 196.75-36 chr5 144449254 144449725 + 0.75 NA intron (NM_001370487, intron 2 of 2) L1MA10|LINE|L1 244098 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 153.75-86 chr8 69760869 69761193 + 0.75 NA intron (NM_001146009, intron 2 of 7) intron (NM_001146009, intron 2 of 7) 72138 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 138-23 chr15 42028681 42028988 + 0.75 NA intron (NM_001206670, intron 1 of 19) intron (NM_001206670, intron 1 of 19) 21869 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 137.75-38 chr18 9284607 9284860 + 0.75 NA 3' UTR (NM_015208, exon 13 of 13) 3' UTR (NM_015208, exon 13 of 13) -50040 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 140.5-67 chr3 174950798 174951141 + 0.75 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 91635 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 123.75-74 chr3 105431250 105431452 + 0.75 NA intron (NM_001243280, intron 1 of 14) MLT1H|LTR|ERVL-MaLR 64442 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 141.5-48 chr18 21029279 21029534 + 0.75 NA intron (NM_005406, intron 9 of 32) intron (NM_005406, intron 9 of 32) 82407 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 116.5-4 chr1 60137929 60138160 + 0.75 NA Intergenic Intergenic -64274 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 126-41 chr2 17273042 17273234 + 0.75 NA Intergenic Intergenic 245302 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 168.75-38 chr3 175814067 175814531 + 0.75 NA Intergenic Intergenic -37966 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 138.5-17 chr11 73627296 73627547 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR -19160 NM_021200 58473 Hs.445489 NM_021200 ENSG00000021300 PLEKHB1 KPL1|PHR1|PHRET1 pleckstrin homology domain containing B1 protein-coding 154.25-41 chr20 3812164 3812408 + 0.75 NA non-coding (NR_109859, exon 4 of 4) non-coding (NR_109859, exon 4 of 4) 3792 NR_109859 101929125 Hs.744106 NR_109859 ENSG00000275491 LINC01730 - long intergenic non-protein coding RNA 1730 ncRNA 124.75-33 chr16 89591552 89591831 + 0.75 NA intron (NM_153636, intron 13 of 14) AluSx1|SINE|Alu 15933 NM_153636 27132 Hs.461775 NM_014427 ENSG00000178773 CPNE7 - copine 7 protein-coding 122.25-61 chr22 28629825 28630111 + 0.75 NA intron (NM_001145418, intron 1 of 22) MSTB1|LTR|ERVL-MaLR 49897 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 115.5-12 chr10 132408585 132408889 + 0.75 NA intron (NM_138499, intron 2 of 2) intron (NM_138499, intron 2 of 2) 11537 NM_138499 170394 Hs.527751 NM_138499 ENSG00000171813 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 130-77 chr7 95573687 95573943 + 0.75 NA Intergenic L1MC3|LINE|L1 22701 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 160.75-49 chr5 491601 491892 + 0.75 NA intron (NM_001284351, intron 2 of 16) CpG 18510 NR_125375 100288152 Hs.535801 NR_125375 SLC9A3-AS1 UC011CLY.2 SLC9A3 antisense RNA 1 ncRNA 215-26 chr2 100765923 100766439 + 0.75 NA Intergenic Intergenic -53958 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 146-18 chr17 6953735 6954112 + 0.75 NA Intergenic Intergenic -42126 NM_000697 239 Hs.654431 NM_000697 ENSG00000108839 ALOX12 12-LOX|12S-LOX|LOG12 arachidonate 12-lipoxygenase, 12S type protein-coding 141-61 chr5 54470005 54470393 + 0.75 NA Intergenic Intergenic 14500 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 267-20 chr4 175102428 175103044 + 0.75 NA Intergenic Intergenic 184378 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 130.75-2 chr1 37616825 37617078 + 0.75 NA intron (NM_001242909, intron 3 of 6) intron (NM_001242909, intron 3 of 6) 17941 NM_001038633 284654 Hs.135015 NM_173640 ENSG00000169218 RSPO1 CRISTIN3|RSPO R-spondin 1 protein-coding 150.75-29 chr2 52856846 52857220 + 0.75 NA Intergenic Intergenic -154418 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 192-44 chr6 36177504 36177843 + 0.75 NA Intergenic AluSz|SINE|Alu -19071 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 167-46 chr3 170354569 170354849 + 0.75 NA Intergenic Intergenic -3006 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 116.5-42 chr16 75351482 75351686 + 0.75 NA intron (NM_006324, intron 5 of 6) L1MC5|LINE|L1 81919 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 126.5-93 chr5 98417026 98417368 + 0.75 NA Intergenic Intergenic -255958 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 140.25-57 chr3 99294433 99294670 + 0.75 NA Intergenic L1MCa|LINE|L1 -344043 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 218.25-48 chr8 133062980 133063372 + 0.75 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -2822 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 114-20 chr12 13910979 13911187 + 0.75 NA intron (NM_000834, intron 1 of 12) L2c|LINE|L2 69273 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 229.75-17 chr3 5297036 5297462 + 0.75 NA Intergenic MIRb|SINE|MIR -46994 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 186.25-46 chr7 17532657 17532943 + 0.75 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 26109 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 113-7 chr1 101547958 101548169 + 0.75 NA Intergenic MER94|DNA|hAT-Blackjack 224226 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 159.5-78 chr8 81247379 81247873 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -32910 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 157.25-51 chr4 33616065 33616412 + 0.75 NA Intergenic Intergenic 423655 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 175.75-34 chr3 195421924 195422263 + 0.75 NA intron (NM_012287, intron 1 of 22) L1MC5a|LINE|L1 20927 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 135-77 chr8 119622138 119622476 + 0.75 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 16532 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 136.25-70 chr7 14262535 14262842 + 0.75 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -271263 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 200.5-32 chr2 36908224 36908671 + 0.75 NA intron (NM_003162, intron 3 of 17) L1ME1|LINE|L1 58089 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 145.75-27 chr18 40075399 40075747 + 0.75 NA intron (NR_110791, intron 2 of 3) intron (NR_110791, intron 2 of 3) 9287 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 155.5-68 chr21 33376570 33376890 + 0.75 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -26166 NM_001329128 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 128-42 chr3 185818582 185818861 + 0.75 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) 2410 NM_001291873 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 232.75-2 chr1 83716561 83716968 + 0.75 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 143782 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 152.25-22 chr15 27507612 27507879 + 0.75 NA intron (NM_033223, intron 6 of 9) L1MCa|LINE|L1 -346426 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 210-35 chr8 6262658 6263019 + 0.75 NA Intergenic Intergenic 143710 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 181.75-24 chr3 96968689 96969183 + 0.75 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 154342 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 134-52 chr3 75066228 75066490 + 0.75 NA Intergenic L1PA5|LINE|L1 -148117 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 219.75-30 chr5 19544906 19545229 + 0.75 NA intron (NM_001349559, intron 8 of 12) intron (NM_001349559, intron 8 of 12) 341205 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 131.25-7 chr1 110867045 110867292 + 0.75 NA Intergenic L1PA15|LINE|L1 -4031 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 120.25-21 chr12 39036805 39037077 + 0.75 NA Intergenic Intergenic -131350 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 177.25-15 chr18 7880441 7880735 + 0.75 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 313272 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 131.25-63 chr3 184179735 184179945 + 0.75 NA intron (NM_001311198, intron 4 of 12) AluJo|SINE|Alu 4985 NM_004068 1173 Hs.518460 NM_004068 ENSG00000161203 AP2M1 AP50|CLAPM1|mu2 adaptor related protein complex 2 subunit mu 1 protein-coding 171.5-53 chr3 1530980 1531342 + 0.75 NA Intergenic MIR|SINE|MIR 438137 NM_001349355 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 119.25-58 chr20 7472600 7472783 + 0.75 NA Intergenic Intergenic 101083 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 191.5-69 chr8 102587989 102588436 + 0.75 NA Intergenic Intergenic 36623 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 149-47 chr5 131661823 131662172 + 0.75 NA intron (NM_133372, intron 15 of 17) MER83B-int|LTR|ERV1 -26768 NM_001164389 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 199-9 chr10 92801874 92802235 + 0.75 NA Intergenic Intergenic -24777 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 224.25-28 chr7 158568590 158568943 + 0.75 NA intron (NM_130843, intron 1 of 21) intron (NM_130843, intron 1 of 21) 19057 NM_130842 5799 Hs.490789 NM_002847 ENSG00000155093 PTPRN2 IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 protein tyrosine phosphatase receptor type N2 protein-coding 200.25-28 chr20 51142894 51143262 + 0.75 NA Intergenic AluSx1|SINE|Alu -119971 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 117.25-77 chr5 92991499 92991869 + 0.75 NA Intergenic Intergenic 579659 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 142.25-61 chr5 166592187 166592619 + 0.75 NA Intergenic Intergenic 333967 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 150.75-72 chr8 127820901 127821257 + 0.75 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 25117 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 148.5-116 chr9 92462612 92462826 + 0.75 NA intron (NM_017680, intron 6 of 8) intron (NM_017680, intron 6 of 8) 19787 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 203.5-27 chr22 26966087 26966556 + 0.75 NA Intergenic Intergenic 63029 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 188-39 chr6 166081233 166081593 + 0.75 NA Intergenic Intergenic -16307 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 121.5-84 chr3 168702761 168703143 + 0.75 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 151098 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 157-49 chr5 11407452 11407792 + 0.75 NA intron (NM_001288715, intron 4 of 20) intron (NM_001288715, intron 4 of 20) 181295 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 143-34 chr2 47841529 47841742 + 0.75 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 47084 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 176.25-61 chr6 109099751 109100048 + 0.75 NA intron (NM_001350663, intron 1 of 9) L2a|LINE|L2 -5053 NM_014454 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 194.25-32 chr20 12407732 12408122 + 0.75 NA Intergenic Intergenic 490034 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 116.25-17 chr12 1177192 1177449 + 0.75 NA intron (NR_027948, intron 7 of 19) Tigger1|DNA|TcMar-Tigger 149572 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 169.75-35 chr2 185904316 185904727 + 0.75 NA Intergenic Intergenic -104370 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 140-59 chr6 144451976 144452337 + 0.75 NA intron (NM_007124, intron 17 of 73) intron (NM_007124, intron 17 of 73) 46501 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 142.25-22 chr14 52051165 52051416 + 0.75 NA intron (NM_007361, intron 5 of 21) intron (NM_007361, intron 5 of 21) 17769 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 163.5-84 chr7 25742503 25742874 + 0.75 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 8344 NR_157814 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 175.75-8 chr14 22797127 22797445 + 0.75 NA intron (NM_001126105, intron 3 of 10) intron (NM_001126105, intron 3 of 10) 18149 NR_040448 9056 Hs.513147 NM_003982 ENSG00000155465 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 member 7 protein-coding 272.25-6 chr15 49436705 49437090 + 0.75 NA intron (NM_002009, intron 2 of 3) intron (NM_002009, intron 2 of 3) 13655 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 129.25-68 chr6 152022030 152022271 + 0.75 NA intron (NM_001122741, intron 6 of 8) intron (NM_001122741, intron 6 of 8) 146137 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 114-52 chr2 235105697 235105861 + 0.75 NA Intergenic MLT1E2|LTR|ERVL-MaLR 78044 NM_001371306 145.25-71 chr6 72463535 72463904 + 0.75 NA Intergenic Intergenic 96973 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 124.5-31 chr14 50160089 50160317 + 0.75 NA intron (NM_006939, intron 9 of 22) intron (NM_006939, intron 9 of 22) -43631 NM_001040662 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 126.75-39 chr18 44485633 44485961 + 0.75 NA intron (NR_110792, intron 2 of 4) L1M1|LINE|L1 45900 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 124-5 chr1 167215313 167215532 + 0.75 NA Intergenic Intergenic -5463 NM_001365848 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 212.5-2 chr1 10096312 10096925 + 0.75 NA intron (NM_006048, intron 3 of 26) AluSx1|SINE|Alu 63660 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 123.75-56 chr2 226330994 226331213 + 0.75 NA Intergenic Intergenic 188309 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 201-30 chr3 17679677 17679984 + 0.75 NA intron (NM_001134381, intron 1 of 23) MER20B|DNA|hAT-Charlie 20190 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 115-41 chr2 134814504 134814682 + 0.75 NA Intergenic Intergenic -24023 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 125.5-50 chr15 67603122 67603395 + 0.75 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 54164 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 142.75-94 chr9 113910304 113910594 + 0.75 NA intron (NM_001318042, intron 1 of 14) intron (NM_001318042, intron 1 of 14) 34140 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 152.75-63 chr8 97657733 97658060 + 0.75 NA intron (NM_001363139, intron 1 of 9) Helitron3Na_Mam|RC|Helitron 13712 NM_001363138 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 140.75-44 chr4 42421238 42421624 + 0.75 NA intron (NM_001105529, intron 34 of 35) MIR|SINE|MIR 23943 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 152-5 chr1 117921672 117922122 + 0.75 NA intron (NM_001135589, intron 1 of 12) L2b|LINE|L2 7724 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 212-26 chr2 201470749 201471242 + 0.75 NA intron (NM_018571, intron 4 of 11) intron (NM_018571, intron 4 of 11) 19255 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 153.25-3 chr1 75152828 75153198 + 0.75 NA intron (NM_001001933, intron 8 of 9) intron (NM_001001933, intron 8 of 9) 18625 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 145.25-80 chr8 25746266 25746494 + 0.75 NA Intergenic Intergenic 287147 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 180-71 chr9 28273478 28273849 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 445642 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 145.5-88 chr7 14233786 14234065 + 0.75 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -242500 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 113.25-33 chr13 84985020 84985248 + 0.75 NA Intergenic Intergenic 162923 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 157.75-18 chr11 68982243 68982681 + 0.75 NA Intergenic L1ME2z|LINE|L1 -1476 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 136.25-42 chr2 22137681 22137862 + 0.75 NA Intergenic L2|LINE|L2 -398708 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 217.25-28 chr7 12473810 12474177 + 0.75 NA Intergenic Intergenic -22436 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 150.75 chr1 168567073 168567344 + 0.75 NA Intergenic Intergenic -9397 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 149.75-66 chr8 52984907 52985389 + 0.75 NA Intergenic L2|LINE|L2 45240 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 117-68 chr5 16737075 16737308 + 0.75 NA intron (NM_012334, intron 19 of 40) intron (NM_012334, intron 19 of 40) -120133 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 145-49 chr3 178562063 178562422 + 0.75 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 3392 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 187-42 chr4 43624771 43625205 + 0.75 NA Intergenic MER77B|LTR|ERVL -132445 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 137.75-7 chr10 60074646 60074984 + 0.75 NA exon (NM_020987, exon 37 of 44) exon (NM_020987, exon 37 of 44) 66201 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 150.25-62 chr5 113477086 113477424 + 0.75 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 11198 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 156.75-21 chr12 120031103 120031583 + 0.75 NA intron (NR_147894, intron 3 of 8) AluY|SINE|Alu 41499 NR_147892 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 118.5-5 chr1 51945463 51945693 + 0.75 NA intron (NM_002867, intron 2 of 4) MIR|SINE|MIR 45122 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 142.75-22 chr11 111940608 111940860 + 0.75 NA intron (NM_001037954, intron 1 of 19) intron (NM_001037954, intron 1 of 19) 3391 NM_001037954 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 137-6 chr1 214426911 214427275 + 0.75 NA intron (NM_005401, intron 3 of 18) AluSc5|SINE|Alu 124509 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 121.5-60 chr2 67947226 67947495 + 0.75 NA Intergenic Intergenic 115644 NM_001190263 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 191.25-30 chr2 44578035 44578470 + 0.75 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 216305 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 150.25-3 chr1 94355771 94356089 + 0.75 NA Intergenic Intergenic -62447 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 143-50 chr3 89926220 89926535 + 0.75 NA Intergenic Intergenic 818756 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 127.25-91 chr8 19954367 19954645 + 0.75 NA intron (NM_000237, intron 5 of 9) intron (NM_000237, intron 5 of 9) 15253 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 118-20 chr12 89558896 89559212 + 0.75 NA Intergenic AluJo|SINE|Alu -32792 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 143-39 chr2 96476676 96476940 + 0.75 NA Intergenic Tigger5b|DNA|TcMar-Tigger 28549 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 132.75-97 chr8 74753518 74753738 + 0.75 NA intron (NR_033830, intron 5 of 5) intron (NR_033830, intron 5 of 5) 47935 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 113.5-96 chr5 28851603 28851854 + 0.75 NA Intergenic Ricksha_c|DNA|MULE-MuDR -75142 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 129.75-54 chr3 67477378 67477769 + 0.75 NA intron (NM_001177599, intron 9 of 10) AluSx1|SINE|Alu 177041 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 121.5 chr1 14648307 14648506 + 0.75 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 49689 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 209.25-6 chr12 41350181 41350723 + 0.75 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -87287 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 142.5-86 chr7 42785009 42785235 + 0.75 NA Intergenic HAL1M8|LINE|L1 -78675 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 162-20 chr2 17881228 17881565 + 0.75 NA intron (NM_002252, intron 1 of 2) intron (NM_002252, intron 1 of 2) 2729 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 118.75-95 chr8 62027046 62027272 + 0.75 NA Intergenic Intergenic 137320 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 125-7 chr1 155409391 155409638 + 0.75 NA intron (NM_018489, intron 6 of 27) L1MC4|LINE|L1 -23666 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 138.5-29 chr13 102861894 102862145 + 0.75 NA intron (NM_000123, intron 7 of 14) intron (NM_000123, intron 7 of 14) 16178 NM_000123 2073 Hs.258429 NM_000123 ENSG00000134899 ERCC5 COFS3|ERCC5-201|ERCM2|UVDR|XPG|XPGC ERCC excision repair 5, endonuclease protein-coding 169.75-52 chr5 113629707 113630052 + 0.75 NA Intergenic L2b|LINE|L2 116185 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 156-36 chr19 5437963 5438318 + 0.75 NA Intergenic Intergenic -17277 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 127.5-4 chr1 56035882 56036260 + 0.75 NA Intergenic Intergenic 90984 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 137.75-67 chr5 14352108 14352353 + 0.75 NA intron (NM_007118, intron 11 of 56) intron (NM_007118, intron 11 of 56) -111753 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 121.25-18 chr14 41978900 41979280 + 0.75 NA Intergenic Intergenic 372234 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 193.75-6 chr10 70557333 70557824 + 0.75 NA intron (NM_014431, intron 18 of 19) intron (NM_014431, intron 18 of 19) 45163 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 127.75-12 chr10 61165834 61166018 + 0.75 NA Intergenic Intergenic 149651 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 181.75-32 chr5 35992110 35992559 + 0.75 NA promoter-TSS (NM_152404) promoter-TSS (NM_152404) -944 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 146.25-65 chr7 18387864 18388207 + 0.75 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 97943 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 131.75-46 chr2 158704736 158704982 + 0.75 NA intron (NR_135242, intron 1 of 3) THE1C|LTR|ERVL-MaLR 30143 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 172.5-90 chr8 137958202 137958680 + 0.75 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 125104 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 127.75-50 chr2 230505048 230505268 + 0.75 NA intron (NM_001080391, intron 21 of 28) MER68|LTR|ERVL 88402 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 155.5-22 chr11 111290149 111290434 + 0.75 NA Intergenic AluSz|SINE|Alu -8255 NM_001271458 120376 Hs.31409 NM_001136105 ENSG00000214290 COLCA2 C11orf93|CASC13|LOH11CR1G colorectal cancer associated 2 protein-coding 122.75-11 chr10 72559646 72559935 + 0.75 NA intron (NM_006077, intron 3 of 11) MER1B|DNA|hAT-Charlie -35804 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 120.75-74 chr4 61187978 61188282 + 0.75 NA Intergenic Intergenic -13100 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 135.25-24 chr12 131617050 131617309 + 0.75 NA Intergenic Intergenic 30942 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 127-52 chr2 169768122 169768381 + 0.75 NA Intergenic CpG -30620 NM_003142 6741 Hs.632535 NM_003142 ENSG00000138385 SSB LARP3|La|La/SSB small RNA binding exonuclease protection factor La protein-coding 119-18 chr13 63064807 63064970 + 0.75 NA Intergenic Intergenic -257529 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 170.25-61 chr7 137998719 137999060 + 0.75 NA intron (NM_001253775, intron 1 of 3) MER45A|DNA|hAT-Tip100 3197 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 173.5-35 chr17 74400804 74401069 + 0.75 NA Intergenic L1ME1|LINE|L1 -31152 NM_001366261 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 145.25-24 chr12 117538960 117539286 + 0.75 NA intron (NM_173598, intron 10 of 19) L5|LINE|RTE-X -177321 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 127.5-132 chrX 38166818 38167163 + 0.75 NA intron (NM_001170751, intron 3 of 8) intron (NM_001170751, intron 3 of 8) 53881 NM_006307 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 175-33 chr20 47559966 47560250 + 0.75 NA intron (NM_181659, intron 1 of 22) AluSz|SINE|Alu 58221 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 141.75-23 chr14 66309418 66309642 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -176841 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 138.75-68 chr6 160603681 160604107 + 0.75 NA intron (NM_005577, intron 18 of 38) L1MEf|LINE|L1 60365 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 190.5-53 chr4 59697729 59698085 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger 684334 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 131.75-51 chr22 25686525 25686734 + 0.75 NA intron (NM_001362778, intron 9 of 19) intron (NM_001362778, intron 9 of 19) -55559 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 134.5-6 chr1 198262422 198262656 + 0.75 NA intron (NM_133494, intron 3 of 9) intron (NM_133494, intron 3 of 9) 105541 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 126.5-11 chr1 197260152 197260513 + 0.75 NA intron (NM_001257965, intron 1 of 14) (AATTAA)n|Simple_repeat|Simple_repeat -7872 NM_001257966 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 175 chr1 113546203 113546495 + 0.75 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 155834 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 162.5-45 chr2 200319775 200320192 + 0.75 NA intron (NM_001282744, intron 1 of 12) L3b|LINE|CR1 11033 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 199-33 chr3 131842763 131843172 + 0.75 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 142964 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 148.75-25 chr17 71035707 71036075 + 0.75 NA Intergenic Intergenic 166288 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 135.5-99 chr7 35681248 35681521 + 0.75 NA intron (NM_022373, intron 2 of 8) L1MB7|LINE|L1 13751 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 124.25-30 chr14 47552546 47552835 + 0.75 NA intron (NM_001113498, intron 1 of 16) L2a|LINE|L2 122264 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 120-80 chr7 7684585 7684807 + 0.75 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 33911 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 151.25-12 chr12 14284622 14284868 + 0.75 NA Intergenic Intergenic -80887 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 155.5-10 chr1 150985980 150986274 + 0.75 NA intron (NM_003568, intron 7 of 13) intron (NM_003568, intron 7 of 13) 3835 NM_003568 8416 Hs.3346 NM_003568 ENSG00000143412 ANXA9 ANX31 annexin A9 protein-coding 184.25 chr1 88050028 88050496 + 0.75 NA Intergenic L1ME4a|LINE|L1 -633882 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 156.25-28 chr18 265327 265631 + 0.75 NA exon (NM_005131, exon 2 of 21) exon (NM_005131, exon 2 of 21) 2568 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 157.25-7 chr1 247375194 247375463 + 0.75 NA Intergenic LTR8|LTR|ERV1 -40828 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 179-27 chr17 60407809 60408218 + 0.75 NA Intergenic AluSx1|SINE|Alu -14476 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 160.75-40 chr21 22719569 22719892 + 0.75 NA Intergenic MER21-int|LTR|ERVL -359554 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 137.75-37 chr17 52695782 52696162 + 0.75 NA Intergenic Intergenic -166149 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 147.25-43 chr3 102283847 102284164 + 0.75 NA Intergenic L1M1|LINE|L1 120300 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 166.75-11 chr10 116081428 116081783 + 0.75 NA intron (NM_145793, intron 7 of 8) MIR|SINE|MIR 113184 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 137.5-22 chr12 47811567 47811820 + 0.75 NA intron (NM_015401, intron 1 of 25) intron (NM_015401, intron 1 of 25) 8210 NM_001368046 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 121-63 chr6 142949796 142950015 + 0.75 NA Intergenic L2a|LINE|L2 -4729 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 153-34 chr4 32611206 32611520 + 0.75 NA Intergenic MIRb|SINE|MIR 260325 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 139.75-34 chr16 51877538 51877810 + 0.75 NA Intergenic Intergenic 115155 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 196.25-32 chr2 76871811 76872216 + 0.75 NA intron (NR_146416, intron 1 of 1) MLT1F2|LTR|ERVL-MaLR -113952 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 140.75-27 chr17 73982410 73982670 + 0.75 NA Intergenic Intergenic -154003 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 113.25-39 chr14 55644625 55644817 + 0.75 NA intron (NR_073129, intron 19 of 45) intron (NR_073129, intron 19 of 45) 64514 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 209.25-49 chr8 116040746 116041201 + 0.75 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 284086 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 157.5-95 chr9 77822093 77822420 + 0.75 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) -173934 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 121.5-39 chr15 74248466 74248741 + 0.75 NA intron (NM_025055, intron 2 of 18) intron (NM_025055, intron 2 of 18) 12277 NM_025055 80125 Hs.383206 NM_025055 ENSG00000140481 CCDC33 CT61|HP11097 coiled-coil domain containing 33 protein-coding 129.75-27 chr14 67927801 67928087 + 0.75 NA intron (NM_133509, intron 7 of 10) L1M2|LINE|L1 104352 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 117.5-62 chr3 21966396 21966624 + 0.75 NA intron (NR_046876, intron 2 of 3) intron (NR_046876, intron 2 of 3) 9371 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 136.75-63 chr3 114067166 114067560 + 0.75 NA intron (NM_001256837, intron 3 of 7) intron (NM_001256837, intron 3 of 7) 10626 NM_001256837 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 118.5-95 chr6 128952472 128952720 + 0.75 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 69455 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 145.5-28 chr14 57491663 57491901 + 0.75 NA intron (NM_001283060, intron 1 of 5) intron (NM_001283060, intron 1 of 5) 2075 NM_001283056 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 120.75-71 chr4 37111577 37111833 + 0.75 NA Intergenic Intergenic 109926 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 147-26 chr14 72854223 72854486 + 0.75 NA intron (NM_001280542, intron 1 of 10) AluSz|SINE|Alu 38295 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 137-59 chr5 108717752 108718085 + 0.75 NA Intergenic L1ME3D|LINE|L1 10343 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 114-88 chr8 9387264 9387491 + 0.75 NA Intergenic LTR39|LTR|ERV1 62326 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 167.75-39 chr20 50292275 50292764 + 0.75 NA promoter-TSS (NR_034124) promoter-TSS (NR_034124) -201 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 172.25-65 chr5 105939781 105940255 + 0.75 NA Intergenic L1M4b|LINE|L1 840544 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 125.25-74 chr6 53215402 53215729 + 0.75 NA Intergenic Intergenic -61428 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 189-6 chr1 117927713 117928018 + 0.75 NA intron (NM_001135589, intron 1 of 12) intron (NM_001135589, intron 1 of 12) 1756 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 115.25-85 chr6 104382296 104382608 + 0.75 NA Intergenic L1PA17|LINE|L1 477094 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 162.75-27 chr16 80817557 80817833 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13097 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 153.75-41 chr2 98711499 98711754 + 0.75 NA intron (NM_012214, intron 2 of 15) intron (NM_012214, intron 2 of 15) 19506 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 186.75-35 chr3 148955010 148955534 + 0.75 NA Intergenic Intergenic -36136 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 125-9 chr1 186930528 186930739 + 0.75 NA intron (NM_024420, intron 7 of 17) intron (NM_024420, intron 7 of 17) 101684 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 113.25-114 chr9 96346884 96347172 + 0.75 NA intron (NR_104627, intron 6 of 12) AluSp|SINE|Alu 36682 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 206.25-31 chr5 122338689 122339223 + 0.75 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) 26719 NM_005460 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 234-42 chr8 88789282 88789850 + 0.75 NA Intergenic L1M5|LINE|L1 -462083 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 118.25-102 chr7 77768287 77768543 + 0.75 NA intron (NM_198467, intron 4 of 7) Penelope1_Vert|LINE|Penelope 30019 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 168.5-47 chr2 201978006 201978305 + 0.75 NA Intergenic Intergenic -56432 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 151.5-26 chr13 69522693 69522952 + 0.75 NA Intergenic Intergenic 300476 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 211.75-2 chr1 219394337 219394761 + 0.75 NA Intergenic L1MB3|LINE|L1 162775 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 151.75-81 chr8 117202575 117202860 + 0.75 NA Intergenic Intergenic 67722 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 173-59 chrX 14672012 14672341 + 0.75 NA intron (NM_002063, intron 7 of 8) MIR3|SINE|MIR 142640 NM_002063 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 138.75-2 chr1 41907188 41907401 + 0.75 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 11628 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 234-16 chr14 70601210 70601716 + 0.75 NA promoter-TSS (NM_001284209) promoter-TSS (NM_001284209) -773 NM_001284210 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 184-25 chr2 119144116 119144576 + 0.75 NA Intergenic L1PB3|LINE|L1 14405 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 178.5-16 chr14 85688968 85689253 + 0.75 NA Intergenic Intergenic 155761 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 123.25-71 chr6 20807903 20808167 + 0.75 NA intron (NM_017774, intron 8 of 15) Cheshire|DNA|hAT-Charlie 273578 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 163.75-61 chr6 47469138 47469598 + 0.75 NA Intergenic L1MA3|LINE|L1 -8421 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 116.75-35 chr18 65517744 65517970 + 0.75 NA Intergenic Intergenic -232395 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 112.75-48 chr2 71354720 71354980 + 0.75 NA intron (NM_001252613, intron 2 of 27) intron (NM_001252613, intron 2 of 27) 23068 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 137.5-45 chr17 68386059 68386376 + 0.75 NA intron (NM_001352899, intron 9 of 12) intron (NM_001352899, intron 9 of 12) -27406 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 142.75-15 chr10 62770952 62771221 + 0.75 NA Intergenic Intergenic -33634 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 258.5-23 chr8 138188842 138189387 + 0.75 NA intron (NM_015912, intron 9 of 19) LTR1D1|LTR|ERV1 -105569 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 138.25-85 chr8 84241064 84241273 + 0.75 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 56502 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 160-44 chr7 134806599 134806830 + 0.75 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 27080 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 148.25-34 chr2 59196642 59196879 + 0.75 NA Intergenic Intergenic -20948 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 127.5-115 chr6 167418632 167418909 + 0.75 NA Intergenic Intergenic -34260 NR_163193 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 148.5-31 chr15 68396029 68396282 + 0.75 NA intron (NM_001004439, intron 2 of 29) L1MEg|LINE|L1 36008 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 138.25-87 chr8 87866622 87866970 + 0.75 NA Intergenic L1MC5a|LINE|L1 7219 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 188.5-54 chr8 108582244 108582570 + 0.75 NA Intergenic ORSL-2b|DNA|hAT-Tip100 138783 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 175.75-3 chr10 63223375 63223687 + 0.75 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 45692 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 128.75-23 chr13 66602311 66602524 + 0.75 NA intron (NM_001318373, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger -222752 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 134.25-36 chr2 60729361 60729610 + 0.75 NA Intergenic Intergenic -26783 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 216.25-13 chr16 8112733 8113208 + 0.75 NA Intergenic LTR8|LTR|ERV1 476868 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 180.75-43 chr22 45013837 45014244 + 0.75 NA Intergenic AluY|SINE|Alu -4035 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 116.25-7 chr1 181289334 181289603 + 0.75 NA Intergenic Intergenic 53080 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 188.75-55 chr9 37124801 37125079 + 0.75 NA intron (NM_001289121, intron 1 of 8) AluSz|SINE|Alu 4342 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 175.25-31 chr2 118765060 118765363 + 0.75 NA Intergenic Intergenic 82972 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 119.5-120 chr8 37240268 37240459 + 0.75 NA Intergenic L3|LINE|CR1 253550 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 167.75-34 chr2 177487658 177488113 + 0.75 NA intron (NM_003659, intron 11 of 19) intron (NM_003659, intron 11 of 19) 64911 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 161.25-47 chr2 176351617 176351949 + 0.75 NA Intergenic Intergenic 82341 NM_006554 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 148.5-3 chr1 165388760 165388994 + 0.75 NA Intergenic MIR|SINE|MIR -32162 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 123-70 chr8 143281436 143281681 + 0.75 NA non-coding (NR_120682, exon 1 of 3) non-coding (NR_120682, exon 1 of 3) 142 NR_120683 100507316 Hs.446671 NR_120682 ENSG00000253716 MINCR LINC01604 MYC-induced long non-coding RNA ncRNA 114.5-33 chr17 61783095 61783301 + 0.75 NA intron (NM_032043, intron 11 of 19) L1MB4|LINE|L1 80361 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 118.25-94 chr6 144989643 144989855 + 0.75 NA Intergenic Intergenic 584094 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 135.5-51 chr2 104706738 104707077 + 0.75 NA Intergenic Intergenic 50812 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 121.5-81 chr3 111311208 111311410 + 0.75 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -230888 NM_005816 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 162-7 chr11 41312058 41312396 + 0.75 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 147409 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 142.5-4 chr1 197991871 197992281 + 0.75 NA Intergenic Intergenic 74704 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 138.25-80 chr7 62883596 62883984 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 420266 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 171.5-51 chr20 42477121 42477457 + 0.75 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -208194 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 175.25-16 chr12 39962508 39963014 + 0.75 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 143320 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 167.5-71 chr5 119541530 119541980 + 0.75 NA intron (NM_001199291, intron 24 of 24) intron (NM_001199291, intron 24 of 24) -87803 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 113.25-103 chr6 137909982 137910195 + 0.75 NA Intergenic Intergenic 35712 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 131-35 chr3 30788245 30788522 + 0.75 NA intron (NM_207359, intron 12 of 14) Tigger1|DNA|TcMar-Tigger 106278 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 242.75-11 chr2 130753163 130753514 + 0.75 NA Intergenic L1MB4|LINE|L1 -2202 NM_152698 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 211 chr1 97209307 97209648 + 0.75 NA intron (NM_000110, intron 19 of 22) intron (NM_000110, intron 19 of 22) 113554 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 124.5-2 chr1 93679483 93679668 + 0.75 NA intron (NM_001261408, intron 3 of 13) intron (NM_001261408, intron 3 of 13) 1795 NM_001261409 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 119.5-112 chr7 6181990 6182230 + 0.75 NA intron (NM_001367581, intron 4 of 13) AluSq2|SINE|Alu -9973 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 141-17 chr12 116689862 116690115 + 0.75 NA Intergenic Intergenic 48081 NM_001353624 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 121.25-33 chr2 79115880 79116195 + 0.75 NA Intergenic L1MA5|LINE|L1 -4451 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 237-22 chr22 19517047 19517598 + 0.75 NA intron (NM_001369291, intron 17 of 18) intron (NM_001369291, intron 17 of 18) 7088 NM_001363066 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 113.25-89 chr4 4274622 4274812 + 0.75 NA exon (NM_001145725, exon 7 of 10) exon (NM_001145725, exon 7 of 10) 15304 NM_001145725 55646 Hs.425427 NM_017816 ENSG00000145220 LYAR ZC2HC2|ZLYAR Ly1 antibody reactive protein-coding 129-46 chr3 174416572 174416759 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -442669 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 211.5-47 chr6 111012997 111013486 + 0.75 NA intron (NM_001289111, intron 6 of 8) intron (NM_001289111, intron 6 of 8) 31203 NM_032194 84154 Hs.372265 NM_032194 ENSG00000197498 RPF2 BXDC1|bA397G5.4 ribosome production factor 2 homolog protein-coding 157-15 chr11 111023802 111024099 + 0.75 NA Intergenic MIRc|SINE|MIR 73368 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 145.75-63 chr5 116655709 116656000 + 0.75 NA Intergenic Intergenic -81031 NM_001300780 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 121-2 chr1 31658124 31658322 + 0.75 NA intron (NM_001856, intron 64 of 70) intron (NM_001856, intron 64 of 70) -13347 NM_012392 553115 Hs.470417 NM_012392 ENSG00000162517 PEF1 ABP32|PEF1A penta-EF-hand domain containing 1 protein-coding 162.25-29 chr3 191286307 191286645 + 0.75 NA intron (NM_198152, intron 4 of 8) L1M1|LINE|L1 -42918 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 192-29 chr2 61332238 61332686 + 0.75 NA intron (NM_014709, intron 19 of 79) intron (NM_014709, intron 19 of 79) 84915 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 180.5-32 chr18 1941376 1941755 + 0.75 NA Intergenic MSTB-int|LTR|ERVL-MaLR -581936 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 176.75-51 chr7 110812355 110812659 + 0.75 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -278499 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 131.75-21 chr12 22961255 22961555 + 0.75 NA Intergenic Intergenic -214231 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 165.25-42 chr4 31385274 31385539 + 0.75 NA Intergenic L1M4c|LINE|L1 -121138 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 164.25-36 chr2 177240557 177240823 + 0.75 NA intron (NM_001313903, intron 1 of 4) intron (NM_001313903, intron 1 of 4) 15320 NR_036075 100422824 NR_036075 ENSG00000265396 MIR3128 mir-3128 microRNA 3128 ncRNA 113-47 chr2 72439324 72439635 + 0.75 NA intron (NM_001321729, intron 18 of 22) L1PA13|LINE|L1 -291617 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 114.75-59 chr3 20956250 20956581 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -449311 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 145.25-50 chr3 16069047 16069290 + 0.75 NA Intergenic Intergenic -105512 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 171.75-11 chr11 59546534 59546863 + 0.75 NA Intergenic AluSx1|SINE|Alu 31785 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 164.5-66 chr4 61267624 61268053 + 0.75 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 65666 NM_001371342 167.5-75 chr6 112364732 112365000 + 0.75 NA Intergenic L1MA4A|LINE|L1 17536 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 160.25-50 chr6 38020023 38020297 + 0.75 NA intron (NM_021943, intron 2 of 5) MIRb|SINE|MIR 200433 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 171.75-48 chr6 28215055 28215356 + 0.75 NA TTS (NR_002936) TTS (NR_002936) 3724 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 122.75-75 chr6 141981422 141981642 + 0.75 NA Intergenic Intergenic 107267 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 137.5-84 chr4 86298581 86298876 + 0.75 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 55916 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 149-18 chr16 24230536 24230822 + 0.75 NA Intergenic Intergenic -5425 NR_146569 105371142 Hs.128031 NR_146569 ENSG00000260264 LINC2194 - long intergenic non-protein coding RNA 2194 ncRNA 190.5-47 chr3 120173413 120173883 + 0.75 NA intron (NM_001168271, intron 7 of 8) intron (NM_001168271, intron 7 of 8) 70647 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 202.5-33 chr4 38408472 38408855 + 0.75 NA Intergenic AluSg4|SINE|Alu 41749 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 151-9 chr12 25508444 25508770 + 0.75 NA intron (NM_152590, intron 7 of 8) L1ME3A|LINE|L1 44676 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 185.75-22 chr14 59469916 59470265 + 0.75 NA Intergenic Intergenic -4710 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 307.25-11 chr8 77777148 77777927 + 0.75 NA Intergenic L1MB2|LINE|L1 326840 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 161.25-38 chr2 38689399 38689695 + 0.75 NA intron (NM_138801, intron 3 of 6) intron (NM_138801, intron 3 of 6) 23433 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 143.25-21 chr12 88071030 88071297 + 0.75 NA intron (NM_025114, intron 43 of 53) L1MD2|LINE|L1 35627 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 168.5-53 chr22 48198661 48199030 + 0.75 NA Intergenic Intergenic -75519 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 164.25-23 chr17 73160135 73160412 + 0.75 NA Intergenic Intergenic -4737 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 244.5-10 chr15 87788739 87789167 + 0.75 NA Intergenic L1P1|LINE|L1 157315 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 192.25-3 chr1 62763099 62763603 + 0.75 NA Intergenic Intergenic -20755 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 289.5-9 chr17 64281058 64281513 + 0.75 NA Intergenic Intergenic -18025 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 204.75-24 chr2 83400262 83400650 + 0.75 NA Intergenic Intergenic -122358 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 249-23 chr22 27164708 27165116 + 0.75 NA Intergenic Intergenic -22604 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 119.75-85 chr8 76718640 76718919 + 0.75 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -35504 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 183.5-67 chr5 86502484 86502760 + 0.75 NA Intergenic Intergenic -115319 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 125.75-46 chr3 21088538 21088878 + 0.75 NA Intergenic L1MA4|LINE|L1 -317018 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 134-7 chr1 108729404 108729733 + 0.75 NA intron (NM_001144937, intron 8 of 12) MIRb|SINE|MIR 16660 NM_001144937 163479 Hs.258253 NM_173532 ENSG00000143107 FNDC7 - fibronectin type III domain containing 7 protein-coding 112.75-23 chr11 90239146 90239472 + 0.75 NA Intergenic L1MEc|LINE|L1 -11923 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 189.75-44 chr6 131719762 131720083 + 0.75 NA intron (NR_133007, intron 16 of 23) intron (NR_133007, intron 16 of 23) -8905 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 166.25-28 chr2 33651877 33652373 + 0.75 NA Intergenic Intergenic -52763 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 159.25 chr1 225917415 225917797 + 0.75 NA Intergenic L1MB8|LINE|L1 4536 NR_106799 102466270 NR_106799 ENSG00000284519 MIR6741 hsa-mir-6741 microRNA 6741 ncRNA 140.5-111 chr8 105700281 105700518 + 0.75 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 360104 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 146.5-88 chr8 79507246 79507459 + 0.75 NA Intergenic L1M7|LINE|L1 -103765 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 185.75-44 chr3 160194624 160195152 + 0.75 NA intron (NR_108088, intron 1 of 9) intron (NR_108088, intron 1 of 9) 12204 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 156-43 chr21 25662160 25662465 + 0.75 NA intron (NR_072999, intron 1 of 9) AluJo|SINE|Alu 23030 NM_001270407 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 182.75-39 chr5 5723354 5723643 + 0.75 NA Intergenic Intergenic 300821 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 187.75-23 chr2 108264607 108265078 + 0.75 NA exon (NM_001008743, exon 7 of 8) exon (NM_001008743, exon 7 of 8) -24053 NM_176825 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 228.5-12 chr18 35720031 35720446 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 65669 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 160.25-13 chr12 29099240 29099575 + 0.75 NA Intergenic Intergenic -49871 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 196.5-78 chr9 20760127 20760570 + 0.75 NA intron (NM_017794, intron 8 of 45) intron (NM_017794, intron 8 of 45) -26579 NR_145762 109616992 NR_145762 ENSG00000202189 SNORA30B - small nucleolar RNA, H/ACA box 30B snoRNA 139-74 chr9 87305405 87305708 + 0.75 NA Intergenic Intergenic 156912 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 143-25 chr14 72426468 72426670 + 0.75 NA intron (NM_001370288, intron 3 of 16) MIRc|SINE|MIR -90251 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 214.75-33 chr6 48184482 48184904 + 0.75 NA Intergenic Intergenic -116004 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 166-47 chr5 60885687 60886044 + 0.75 NA intron (NM_001007233, intron 12 of 12) intron (NM_001007233, intron 12 of 12) -41591 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 145.5-22 chr12 38601295 38601764 + 0.75 NA Intergenic Intergenic 284755 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 141.25-14 chr11 45378515 45378895 + 0.75 NA intron (NR_122071, intron 1 of 4) intron (NR_122071, intron 1 of 4) 7308 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 127.25-95 chr8 132542264 132542509 + 0.75 NA Intergenic AluSz|SINE|Alu 19093 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 229.25-20 chr4 160368690 160369053 + 0.75 NA Intergenic Intergenic -591087 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 150-29 chr18 5428755 5429022 + 0.75 NA intron (NM_001281535, intron 10 of 21) MIR|SINE|MIR 111668 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 152-52 chr5 36125971 36126361 + 0.75 NA intron (NM_001007527, intron 6 of 17) intron (NM_001007527, intron 6 of 17) 21822 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 125.5-52 chr15 83838232 83838599 + 0.75 NA intron (NM_207517, intron 7 of 29) L1M5|LINE|L1 184292 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 137.75-2 chr1 147676348 147676634 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -5967 NR_136635 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 184.5-73 chr7 138633756 138634066 + 0.75 NA intron (NM_174959, intron 5 of 11) intron (NM_174959, intron 5 of 11) 30313 NM_001331192 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 113.75-35 chr14 56979879 56980081 + 0.75 NA Intergenic MIRc|SINE|MIR 166822 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 155.25-15 chr12 110217905 110218176 + 0.75 NA intron (NR_144950, intron 18 of 18) intron (NR_144950, intron 18 of 18) -63207 NM_001681 488 Hs.506759 NM_001681 ENSG00000174437 ATP2A2 ATP2B|DAR|DD|SERCA2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 protein-coding 130.5-67 chr4 91487806 91488036 + 0.75 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 789381 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 160.5-39 chr2 225560256 225560752 + 0.75 NA intron (NM_001371273, intron 4 of 7) L1M5|LINE|L1 159618 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 118.25-96 chr6 164202875 164203187 + 0.75 NA Intergenic Intergenic -531547 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 159.25-55 chr5 39853170 39853427 + 0.75 NA Intergenic L2c|LINE|L2 -198993 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 167.75-42 chr22 39738264 39738513 + 0.75 NA Intergenic L2c|LINE|L2 155372 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 144.25-63 chr5 127885991 127886224 + 0.75 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 182718 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 161-54 chr5 95121488 95121868 + 0.75 NA intron (NM_024717, intron 1 of 22) L1MA3|LINE|L1 -39812 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 196-16 chr14 86756507 86756822 + 0.75 NA Intergenic AluSz6|SINE|Alu -149114 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 126-3 chr1 179487116 179487362 + 0.75 NA intron (NR_073544, intron 17 of 25) intron (NR_073544, intron 17 of 25) 88709 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 135.75-57 chr20 32509647 32510052 + 0.75 NA promoter-TSS (NR_110619) promoter-TSS (NR_110619) -110 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 195.5-27 chr14 65681998 65682337 + 0.75 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 211065 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 132.25-38 chr18 12495963 12496232 + 0.75 NA exon (NM_001128626, exon 7 of 17) exon (NM_001128626, exon 7 of 17) 63323 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 158.25-20 chr15 91151905 91152184 + 0.75 NA intron (NM_001323040, intron 2 of 12) LTR65|LTR|ERV1 50248 NM_001323040 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 181.5-23 chr17 19885843 19886171 + 0.75 NA Intergenic AluJb|SINE|Alu -18071 NM_014683 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 120.75-31 chr15 60852970 60853249 + 0.75 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 171540 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 145-64 chr8 54443875 54444288 + 0.75 NA Intergenic Intergenic -13854 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 113-77 chr5 25245743 25245926 + 0.75 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 54881 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 194.25-10 chr12 1599432 1599805 + 0.75 NA Intergenic AluSp|SINE|Alu -5037 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 162.25-23 chr2 105074175 105074649 + 0.75 NA intron (NM_182640, intron 4 of 10) intron (NM_182640, intron 4 of 10) 28532 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 200.5-48 chr4 22671393 22671713 + 0.75 NA Intergenic Intergenic -21361 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 166.5-71 chr4 46852691 46853002 + 0.75 NA intron (NM_130902, intron 1 of 2) Tigger17a|DNA|TcMar-Tigger 56399 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 130.75-58 chr4 134600102 134600415 + 0.75 NA Intergenic MER76|LTR|ERVL 176390 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 130.75-77 chr9 106490074 106490394 + 0.75 NA Intergenic L1MB8|LINE|L1 -110694 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 150.75-54 chr4 70480483 70480931 + 0.75 NA intron (NM_001145006, intron 3 of 3) L2|LINE|L2 8510 NM_152291 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 232.25-6 chr11 56091484 56091939 + 0.75 NA Intergenic Intergenic -1597 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 237.5-31 chr4 30588953 30589401 + 0.75 NA Intergenic Intergenic -131192 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 179.25-15 chr14 88852891 88853219 + 0.75 NA exon (NM_198309, exon 8 of 15) exon (NM_198309, exon 8 of 15) 28404 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 117.25-51 chr20 54056458 54056750 + 0.75 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 2416 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 141.25-63 chr6 44353467 44353664 + 0.75 NA intron (NM_145026, intron 3 of 8) L1ME3B|LINE|L1 10905 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 167.5-24 chr15 61873135 61873445 + 0.75 NA exon (NM_017684, exon 76 of 83) exon (NM_017684, exon 76 of 83) 143372 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 167.25-14 chr10 48650666 48651058 + 0.75 NA intron (NM_001347738, intron 2 of 10) intron (NM_001347738, intron 2 of 10) 1640 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 125-38 chr17 65404971 65405184 + 0.75 NA Intergenic Intergenic -52464 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 127-42 chr19 2063847 2064129 + 0.75 NA Intergenic AluSx|SINE|Alu -12744 NM_199054 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAPK interacting serine/threonine kinase 2 protein-coding 126.75-17 chr12 48708812 48709155 + 0.75 NA intron (NM_001240, intron 2 of 8) AluJo|SINE|Alu 7724 NM_001240 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 168-67 chr8 122516913 122517239 + 0.75 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 51568 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 150.5-35 chr16 35968116 35968470 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 221741 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 161.5-21 chr11 68230548 68230966 + 0.75 NA Intergenic L1M4c|LINE|L1 -17109 NM_001369430 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 116.75-55 chr4 42812084 42812396 + 0.75 NA Intergenic MER115|DNA|hAT-Tip100 -81026 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 150-15 chr10 85922342 85922609 + 0.75 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 342313 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 130.25-45 chr2 48511045 48511311 + 0.75 NA intron (NR_024188, intron 20 of 21) L1MA4|LINE|L1 -18747 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 125.75-42 chr21 24228410 24228726 + 0.75 NA Intergenic LTR27D|LTR|ERV1 92809 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 171.75-63 chr9 30989054 30989402 + 0.75 NA Intergenic L1PA12|LINE|L1 392262 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 116.75-78 chr7 144163791 144164057 + 0.75 NA Intergenic L1MC2|LINE|L1 -19046 NM_001278507 100142659 Hs.661442 NM_001278507 ENSG00000244693 CTAGE8 CTAGE4 CTAGE family member 8 protein-coding 133.75-20 chr13 33550785 33550993 + 0.75 NA intron (NM_001243476, intron 3 of 17) Tigger4|DNA|TcMar-Tigger 125905 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 136.75-10 chr10 51440061 51440301 + 0.75 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 140608 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 164.5-8 chr10 14768233 14768580 + 0.75 NA intron (NM_031453, intron 1 of 4) L1M3|LINE|L1 6491 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 148.5-102 chr7 62601668 62602122 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 702161 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 117-37 chr2 118972390 118972671 + 0.75 NA intron (NM_006770, intron 4 of 16) MIRb|SINE|MIR 30361 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 206.5-43 chr5 172667971 172668338 + 0.75 NA intron (NM_001308177, intron 1 of 3) L2a|LINE|L2 5989 NR_049799 100847029 NR_049799 ENSG00000265160 MIR5003 - microRNA 5003 ncRNA 126.25-76 chr5 169405293 169405506 + 0.75 NA Intergenic Intergenic -104260 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 126.5-20 chr11 73448976 73449239 + 0.75 NA intron (NM_001286051, intron 2 of 5) AluJo|SINE|Alu 72439 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 157-30 chr2 171640712 171640944 + 0.75 NA Intergenic AluSx1|SINE|Alu -46641 NM_001378 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 170-57 chr9 135778151 135778442 + 0.75 NA intron (NM_001272003, intron 20 of 30) MIR3|SINE|MIR 76111 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 132-87 chrX 114148261 114148619 + 0.75 NA Intergenic Intergenic -210222 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 155.75-8 chr10 89164269 89164713 + 0.75 NA Intergenic L2c|LINE|L2 42826 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 210.5-36 chr20 37110623 37110944 + 0.75 NA intron (NM_152503, intron 21 of 24) intron (NM_152503, intron 21 of 24) -14786 NM_001323281 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 117.75-26 chr15 85975872 85976066 + 0.75 NA Intergenic L1ME5|LINE|L1 -103651 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 120.25-49 chr3 125363504 125363690 + 0.75 NA intron (NM_001348427, intron 1 of 9) intron (NM_001348427, intron 1 of 9) -6317 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 120-88 chr8 120696252 120696527 + 0.75 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -64864 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 117-86 chr8 122412395 122412673 + 0.75 NA Intergenic Intergenic 156110 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 220.25-31 chr3 187565275 187565728 + 0.75 NA Intergenic Intergenic 104893 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 145.75-14 chr14 72471926 72472248 + 0.75 NA intron (NM_001370288, intron 8 of 16) intron (NM_001370288, intron 8 of 16) -44733 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 118-6 chr1 193747275 193747481 + 0.75 NA Intergenic L1ME2|LINE|L1 442633 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 125.75-62 chr5 142199226 142199545 + 0.75 NA Intergenic MLT1O|LTR|ERVL-MaLR 90606 NM_030571 80762 Hs.9788 NM_030571 ENSG00000131507 NDFIP1 N4WBP5 Nedd4 family interacting protein 1 protein-coding 196.5-47 chr2 201532735 201533099 + 0.75 NA intron (NM_001168216, intron 11 of 12) MLT1H2-int|LTR|ERVL-MaLR 81177 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 151-21 chr16 46797249 46797522 + 0.75 NA non-coding (NR_145835, exon 5 of 5) non-coding (NR_145835, exon 5 of 5) 33663 NR_145837 388272 Hs.406551 NM_001001436 ENSG00000155330 C16orf87 - chromosome 16 open reading frame 87 protein-coding 131.25-43 chr2 46974539 46974814 + 0.75 NA intron (NM_001288951, intron 3 of 20) LTR36|LTR|ERV1 -32821 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 118.5-79 chr4 55239028 55239265 + 0.75 NA Intergenic L1MA7|LINE|L1 -107096 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 133-65 chr8 103379506 103379693 + 0.75 NA intron (NM_138455, intron 3 of 3) intron (NM_138455, intron 3 of 3) 7092 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 122-57 chr4 179457637 179457843 + 0.75 NA Intergenic Intergenic -1549804 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 216.75-21 chr2 15400433 15400844 + 0.75 NA intron (NR_052013, intron 26 of 50) intron (NR_052013, intron 26 of 50) 160696 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 242.75-10 chr2 104451262 104451750 + 0.75 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 17159 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 124.5-64 chr22 27494592 27494863 + 0.75 NA Intergenic Intergenic 184076 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 206-9 chr12 44650837 44651235 + 0.75 NA intron (NM_006159, intron 14 of 20) MER1B|DNA|hAT-Charlie 224625 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 128.25-70 chr6 77780534 77780784 + 0.75 NA intron (NM_001282136, intron 3 of 4) intron (NM_001282136, intron 3 of 4) 127620 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 162.75-50 chr4 41044720 41045025 + 0.75 NA intron (NM_001330658, intron 3 of 15) HAL1M8|LINE|L1 169670 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 117.25-20 chr11 45457111 45457486 + 0.75 NA Intergenic Intergenic 85901 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 135.5-33 chr14 59259547 59259877 + 0.75 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -3729 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 177.75-46 chr5 174970476 174970879 + 0.75 NA intron (NR_046113, intron 2 of 2) MLT1G|LTR|ERVL-MaLR 25054 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 198.25-45 chr8 90940202 90940581 + 0.75 NA intron (NM_022351, intron 9 of 12) intron (NM_022351, intron 9 of 12) 44686 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 135.75-83 chr5 167830181 167830425 + 0.75 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 75374 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 113.75-64 chr20 33030437 33030615 + 0.75 NA Intergenic L2b|LINE|L2 -1122 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 136.75-94 chr7 55246432 55246636 + 0.75 NA intron (NR_110426, intron 2 of 3) intron (NR_110426, intron 2 of 3) 9101 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 169-4 chr1 98200924 98201247 + 0.75 NA Intergenic Intergenic -9626 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 133-41 chr2 199864924 199865270 + 0.75 NA Intergenic Intergenic -13924 NM_001350853 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 201-38 chr4 113550876 113551254 + 0.75 NA intron (NM_001221, intron 5 of 18) intron (NM_001221, intron 5 of 18) 210673 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 118.5-102 chr7 38937911 38938111 + 0.75 NA Intergenic Intergenic -28811 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 120.75-26 chr12 125200124 125200391 + 0.75 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) 13871 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 150-82 chr8 133123628 133123944 + 0.75 NA intron (NM_003235, intron 45 of 47) intron (NM_003235, intron 45 of 47) -21184 NM_001045556 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 173.75-57 chr8 119617602 119618058 + 0.75 NA intron (NM_001330600, intron 5 of 25) AluSq2|SINE|Alu 21009 NM_006209 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 151.5-68 chr5 116909794 116910176 + 0.75 NA Intergenic MER121|DNA|hAT? -147776 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 136.75-69 chr4 13552398 13552806 + 0.75 NA Intergenic L1PREC2|LINE|L1 -4778 NR_015450 285548 Hs.529284 NR_015450 LINC01096 - long intergenic non-protein coding RNA 1096 ncRNA 177-59 chr8 79383068 79383375 + 0.75 NA Intergenic Intergenic 51033 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 165.5-96 chrX 67617090 67617413 + 0.75 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 72628 NM_001348064 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 186-48 chr6 169178489 169178880 + 0.75 NA intron (NR_125863, intron 2 of 2) intron (NR_125863, intron 2 of 2) 4056 NR_125863 101929504 Hs.147721 NR_125863 ENSG00000261039 LINC02544 - long intergenic non-protein coding RNA 2544 ncRNA 113.25-100 chr6 49230158 49230434 + 0.75 NA Intergenic L1MA2|LINE|L1 232957 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 118-69 chr8 80330268 80330473 + 0.75 NA Intergenic MIR|SINE|MIR 88981 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 149.75-9 chr11 76738963 76739319 + 0.75 NA Intergenic Intergenic -17352 NR_024042 390226 Hs.440026 NR_024042 GUCY2EP GC-E|GCD|GUCY2E guanylate cyclase 2E, pseudogene pseudo 114.25-38 chr17 58683078 58683396 + 0.75 NA intron (NM_031272, intron 1 of 31) AluSz|SINE|Alu 8818 NM_198393 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 144.5-76 chr3 194414640 194414866 + 0.75 NA intron (NM_001367549, intron 31 of 33) intron (NM_001367549, intron 31 of 33) -15487 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 121.25-53 chr4 128335957 128336229 + 0.75 NA Intergenic Intergenic -48280 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 173.5-98 chr7 77548181 77548553 + 0.75 NA intron (NM_001131009, intron 1 of 16) intron (NM_001131009, intron 1 of 16) 10324 NM_001131008 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 147.75-57 chr4 106636559 106636821 + 0.75 NA Intergenic Intergenic 203066 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 205-39 chr7 7994755 7995128 + 0.75 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 26145 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 165.25-27 chr2 173709610 173710053 + 0.75 NA Intergenic Intergenic 254049 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 177-29 chr2 155490290 155490679 + 0.75 NA Intergenic Intergenic 764447 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 166.5-36 chr15 58449299 58449588 + 0.75 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 17452 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 118-64 chr6 164522724 164523085 + 0.75 NA Intergenic Intergenic 299159 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 175.75-35 chr4 36719376 36719718 + 0.75 NA Intergenic HERVL-int|LTR|ERVL -77647 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 217-3 chr1 104188108 104188535 + 0.75 NA Intergenic Intergenic 115298 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 134-59 chr4 98072865 98073128 + 0.75 NA intron (NM_174952, intron 5 of 10) MIR|SINE|MIR 70480 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 141.5-56 chr2 63285757 63286056 + 0.75 NA intron (NR_148704, intron 14 of 18) L1MEc|LINE|L1 152101 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 127.25-92 chr8 123382381 123382769 + 0.75 NA intron (NM_014109, intron 1 of 27) Charlie2b|DNA|hAT-Charlie 13872 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 164-21 chr15 55912808 55913237 + 0.75 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 4109 NM_001284339 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 116.5-65 chr2 170646775 170647088 + 0.75 NA non-coding (NR_045684, exon 32 of 35) non-coding (NR_045684, exon 32 of 35) 67636 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 133.25-33 chr17 73066932 73067218 + 0.75 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 25613 NM_001352693 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 168-50 chr3 177811508 177811825 + 0.75 NA Intergenic Intergenic -5199 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 128.25-26 chr15 39545549 39545775 + 0.75 NA Intergenic L1MA9|LINE|L1 -35417 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 131.75-12 chr11 244017 244269 + 0.75 NA exon (NM_175932, exon 2 of 11) exon (NM_175932, exon 2 of 11) 7167 NM_002817 5719 Hs.134688 NM_002817 ENSG00000185627 PSMD13 HSPC027|Rpn9|S11|p40.5 proteasome 26S subunit, non-ATPase 13 protein-coding 227-25 chr5 34652251 34652757 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -3824 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 163-3 chr1 117528620 117528980 + 0.75 NA TTS (NM_006699) TTS (NM_006699) 76970 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 133.5-101 chr6 105054713 105055007 + 0.75 NA intron (NM_001004317, intron 3 of 3) L1MEf|LINE|L1 81486 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 251-30 chr8 67762869 67763298 + 0.75 NA Intergenic MER92-int|LTR|ERV1 -16723 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 170.75-16 chr11 65633125 65633457 + 0.75 NA intron (NM_032223, intron 27 of 34) intron (NM_032223, intron 27 of 34) -3019 NR_039839 100616292 NR_039839 ENSG00000266041 MIR4690 - microRNA 4690 ncRNA 155.75-51 chr5 67966193 67966448 + 0.75 NA Intergenic L1M5|LINE|L1 173107 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 115-43 chr2 196541092 196541405 + 0.75 NA intron (NM_001348768, intron 1 of 28) Tigger13a|DNA|TcMar-Tigger 51735 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 161-15 chr11 20754693 20754998 + 0.75 NA intron (NM_201551, intron 2 of 18) intron (NM_201551, intron 2 of 18) 85259 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 224.5-15 chr17 35734861 35735242 + 0.75 NA 5' UTR (NM_033315, exon 2 of 4) 5' UTR (NM_033315, exon 2 of 4) 3412 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 117.75-58 chr3 196838002 196838190 + 0.75 NA Intergenic LTR86A2|LTR|ERVL -29760 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 129.75-71 chr6 72179061 72179299 + 0.75 NA intron (NM_014989, intron 4 of 33) intron (NM_014989, intron 4 of 33) -33713 NM_001350447 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 130.5-102 chr8 133183049 133183378 + 0.75 NA Intergenic Intergenic -7826 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 174.25-62 chr9 74701460 74701757 + 0.75 NA Intergenic Tigger12|DNA|TcMar-Tigger 86074 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 163-25 chr2 197470308 197470644 + 0.75 NA intron (NM_001320820, intron 4 of 4) intron (NM_001320820, intron 4 of 4) 16427 NR_132787 106635539 NR_132787 SNORA105A - small nucleolar RNA, H/ACA box 105A snoRNA 158-22 chr16 58817525 58817895 + 0.75 NA Intergenic MIR|SINE|MIR -83394 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 119.5-27 chr12 30710808 30711063 + 0.75 NA intron (NM_001206856, intron 16 of 16) intron (NM_001206856, intron 16 of 16) -15066 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 118.25-21 chr12 58523300 58523546 + 0.75 NA Intergenic L1ME3|LINE|L1 -68279 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 141.25-47 chr2 48997206 48997451 + 0.75 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -62275 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 117-70 chr5 67359087 67359330 + 0.75 NA Intergenic L2c|LINE|L2 -162409 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 151.5-13 chr10 67051351 67051633 + 0.75 NA intron (NR_111909, intron 2 of 2) AluSx3|SINE|Alu 39226 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 130.5-51 chr20 311024 311313 + 0.75 NA Intergenic Intergenic 13598 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 154.25-47 chr3 140277689 140277973 + 0.75 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 230958 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 210-17 chr2 29836171 29836642 + 0.75 NA intron (NM_004304, intron 1 of 28) MLT1I|LTR|ERVL-MaLR 85180 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 124.75-29 chr15 50646976 50647287 + 0.75 NA intron (NR_149154, intron 4 of 37) intron (NR_149154, intron 4 of 37) 39666 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 239-4 chr1 172219498 172220116 + 0.75 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -74972 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 138.25-5 chr1 112731045 112731404 + 0.75 NA Intergenic Intergenic 10657 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 143.5-89 chr6 103215054 103215311 + 0.75 NA Intergenic Intergenic 1644364 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 118-61 chr6 85548947 85549134 + 0.75 NA intron (NM_001350538, intron 8 of 28) intron (NM_001350538, intron 8 of 28) 44818 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 145.5-60 chr22 26398986 26399269 + 0.75 NA Intergenic Intergenic -30133 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 141-64 chr5 120103708 120104021 + 0.75 NA Intergenic Intergenic -360414 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 158.5-78 chr4 40394330 40394612 + 0.75 NA Intergenic Intergenic 59138 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 147.5-44 chr2 35656981 35657306 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 185738 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 113-17 chr12 2189301 2189580 + 0.75 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 34041 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 163.25-37 chr2 76509931 76510327 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -475836 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 128.5-43 chr2 78926489 78926729 + 0.75 NA Intergenic L3|LINE|CR1 -99093 NM_198448 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 116.25-74 chr5 79285370 79285721 + 0.75 NA intron (NM_152405, intron 2 of 10) intron (NM_152405, intron 2 of 10) 49414 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 116.25-61 chr3 194079718 194080024 + 0.75 NA Intergenic Intergenic -8901 NR_136179 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 118-25 chr14 45109099 45109296 + 0.75 NA intron (NM_017922, intron 7 of 13) L1ME1|LINE|L1 -1678 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 179.25-30 chr3 53932450 53932785 + 0.75 NA Intergenic L1MEf|LINE|L1 -40758 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 158.5-56 chr2 55877327 55877559 + 0.75 NA intron (NM_001039349, intron 6 of 10) intron (NM_001039349, intron 6 of 10) 46339 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 120.25-48 chr3 109517767 109518035 + 0.75 NA Intergenic Intergenic -84927 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 184-12 chr11 12672544 12672983 + 0.75 NA Intergenic L1MD2|LINE|L1 -1658 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 146.5-44 chr2 7360404 7360675 + 0.75 NA Intergenic Intergenic -60722 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 156.75-89 chr8 129969316 129969625 + 0.75 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -29659 NM_001353297 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 156.5-19 chr14 45387985 45388328 + 0.75 NA Intergenic Intergenic -134954 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 135.5-84 chr5 94679705 94679936 + 0.75 NA intron (NM_032290, intron 15 of 20) intron (NM_032290, intron 15 of 20) 61151 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 143.25-78 chr9 24534304 24534552 + 0.75 NA Intergenic Intergenic 11248 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 150.5-72 chr5 73639995 73640195 + 0.75 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 13937 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 148.25-42 chr20 11317112 11317512 + 0.75 NA Intergenic L1M3|LINE|L1 -43929 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 144.25-70 chr6 112462098 112462432 + 0.75 NA Intergenic MER57A-int|LTR|ERV1 114935 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 213-40 chr7 4675747 4676144 + 0.75 NA Intergenic AluJo|SINE|Alu -6350 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 163.5-82 chr6 108836519 108837014 + 0.75 NA Intergenic L1MB5|LINE|L1 -11650 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 208.5-10 chr11 18409822 18410370 + 0.75 NA Intergenic AluY|SINE|Alu -2210 NM_002301 3948 Hs.654377 NM_002301 ENSG00000166796 LDHC CT32|LDH3|LDHX lactate dehydrogenase C protein-coding 143.5-70 chr4 40763703 40763951 + 0.75 NA intron (NM_024677, intron 4 of 11) intron (NM_024677, intron 4 of 11) 13872 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 123.75-22 chr11 38505599 38505893 + 0.75 NA Intergenic LTR47A|LTR|ERVL 140610 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 133.5-28 chr14 70485758 70486119 + 0.75 NA Intergenic L1MA6|LINE|L1 -2182 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 193.75-32 chr21 33292027 33292395 + 0.75 NA intron (NM_000628, intron 6 of 6) ERV3-16A3_I-int|LTR|ERVL 25844 NM_000628 3588 Hs.654593 NM_000628 ENSG00000243646 IL10RB CDW210B|CRF2-4|CRFB4|D21S58|D21S66|IL-10R2 interleukin 10 receptor subunit beta protein-coding 144.25-22 chr15 68587759 68588081 + 0.75 NA intron (NM_006091, intron 1 of 11) MIRb|SINE|MIR 8927 NM_006091 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 141.25-51 chr20 59329888 59330189 + 0.75 NA Intergenic Intergenic 29427 NM_207033 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 202.5-36 chr4 92478475 92478790 + 0.75 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 174233 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 173.5-55 chr20 35645566 35645890 + 0.75 NA intron (NM_001198863, intron 1 of 15) intron (NM_001198863, intron 1 of 15) 8181 NM_003915 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 125.25-43 chr2 138525203 138525511 + 0.75 NA intron (NM_001001664, intron 1 of 10) THE1B|LTR|ERVL-MaLR 23587 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 133-60 chr7 42928917 42929139 + 0.75 NA intron (NM_002787, intron 1 of 7) FLAM_C|SINE|Alu 3146 NM_002787 5683 Hs.333786 NM_002787 ENSG00000106588 PSMA2 HC3|MU|PMSA2|PSC2 proteasome subunit alpha 2 protein-coding 131-64 chr7 1812148 1812428 + 0.75 NA Intergenic Intergenic 31965 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 147.25-19 chr16 74089039 74089427 + 0.75 NA Intergenic AluSc8|SINE|Alu 126288 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 170.25-32 chr2 18700885 18701245 + 0.75 NA Intergenic Intergenic -111485 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 163.5-69 chr5 83726045 83726311 + 0.75 NA Intergenic L2a|LINE|L2 -5323 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 129.75-46 chr20 31510862 31511100 + 0.75 NA Intergenic Intergenic -3429 NM_178581 81502 Hs.373741 NM_030789 ENSG00000101294 HM13 H13|IMP1|IMPAS|IMPAS-1|MSTP086|PSENL3|PSL3|SPP|SPPL1 histocompatibility minor 13 protein-coding 157-17 chr12 59166559 59166964 + 0.75 NA Intergenic L2a|LINE|L2 -246223 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 157.5-6 chr1 159340388 159340733 + 0.75 NA Intergenic Intergenic -25901 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 134.5-58 chr3 58428730 58429051 + 0.75 NA intron (NR_033384, intron 7 of 8) AluSq|SINE|Alu 4942 NM_000925 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PDHE1B|PHE1B pyruvate dehydrogenase E1 beta subunit protein-coding 136.5-76 chr3 181978746 181979059 + 0.75 NA intron (NR_104146, intron 5 of 7) L3|LINE|CR1 26538 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 128-9 chr11 83310855 83311196 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -24618 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 115.5-76 chr5 127442234 127442539 + 0.75 NA intron (NM_001256545, intron 18 of 24) intron (NM_001256545, intron 18 of 24) -75254 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 126.5-4 chr1 58692085 58692312 + 0.75 NA intron (NM_001085487, intron 3 of 19) intron (NM_001085487, intron 3 of 19) 7864 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 143.75-15 chr10 94627187 94627489 + 0.75 NA Intergenic Intergenic -56391 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 148.25-22 chr15 63678614 63678892 + 0.75 NA intron (NM_003922, intron 36 of 77) intron (NM_003922, intron 36 of 77) -77926 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 147-6 chr1 233517856 233518215 + 0.75 NA Intergenic Intergenic -96071 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 140.5-36 chr18 4523855 4524199 + 0.75 NA Intergenic Intergenic -68720 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 226.5-18 chr14 68033160 68033693 + 0.75 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 209834 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 163.5-32 chr16 17937493 17937936 + 0.75 NA Intergenic Intergenic 394948 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 132.75-103 chr8 135975898 135976143 + 0.75 NA Intergenic Intergenic 518564 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 184.75-56 chr8 68884386 68884847 + 0.75 NA Intergenic LTR1D|LTR|ERV1 219574 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 165.75-53 chr5 75446543 75446990 + 0.75 NA intron (NM_031361, intron 3 of 16) L1M4c|LINE|L1 64863 NM_031361 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 140.5-72 chr4 53258441 53258766 + 0.75 NA intron (NM_152540, intron 4 of 8) L1PB1|LINE|L1 107458 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 134.75-50 chr3 80655216 80655444 + 0.75 NA Intergenic Intergenic -109567 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 149.75-25 chr2 32952211 32952545 + 0.75 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 5425 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 178-54 chr8 136672415 136672792 + 0.75 NA intron (NR_147196, intron 2 of 5) Tigger17a|DNA|TcMar-Tigger 141805 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 211-37 chr8 131384047 131384472 + 0.75 NA Intergenic Intergenic -343350 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 120.5-108 chr8 112551926 112552225 + 0.75 NA intron (NM_001363185, intron 24 of 66) intron (NM_001363185, intron 24 of 66) -91418 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 189.75-2 chr1 81500611 81500947 + 0.75 NA intron (NM_001366008, intron 2 of 26) L1MB3|LINE|L1 56923 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 131.5-80 chr6 113503548 113503820 + 0.75 NA Intergenic Intergenic -70237 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 184.75-33 chr2 135459253 135459647 + 0.75 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 71135 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 130-20 chr14 71021260 71021640 + 0.75 NA intron (NM_014982, intron 12 of 35) L1PA7|LINE|L1 113991 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 141-55 chr4 94870 95102 + 0.75 NA Intergenic MER61C|LTR|ERV1 -29490 NR_110527 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 198.5-35 chr4 57745750 57746160 + 0.75 NA Intergenic L1PA10|LINE|L1 320083 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 160.25-61 chr9 37143900 37144246 + 0.75 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 23475 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 188.75-23 chr21 32128239 32128674 + 0.75 NA Intergenic Intergenic -42161 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 140-41 chr3 2157233 2157484 + 0.75 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -13117 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 145.25-76 chr7 39471492 39471722 + 0.75 NA Intergenic Intergenic -65261 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 141.25-8 chr10 33415397 33415655 + 0.75 NA Intergenic L1PA16|LINE|L1 -80621 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 160.5-4 chr1 241397697 241397972 + 0.75 NA Intergenic Intergenic -40604 NM_001350115 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 154.75-8 chr11 35583801 35584125 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -34497 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 214.75-38 chr7 125872494 125873092 + 0.75 NA Intergenic MER31B|LTR|ERV1 -608502 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 134.5-100 chr8 140555256 140555647 + 0.75 NA intron (NM_001164623, intron 10 of 17) FRAM|SINE|Alu 43455 NR_040712 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 151-48 chr4 78251440 78251743 + 0.75 NA intron (NM_001166133, intron 4 of 41) L1MA9|LINE|L1 -37394 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 139-67 chr8 88934349 88934597 + 0.75 NA Intergenic L1PREC2|LINE|L1 -606990 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 198-19 chr16 76557241 76557727 + 0.75 NA intron (NR_136210, intron 24 of 24) Charlie1a|DNA|hAT-Charlie -77514 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 208.5-57 chr5 12746575 12746908 + 0.75 NA intron (NR_033383, intron 3 of 3) L1MA4|LINE|L1 78882 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 124.5-71 chr3 166709025 166709402 + 0.75 NA Intergenic Intergenic -189470 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 139.25-81 chr8 103857075 103857289 + 0.75 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 37962 NM_001348498 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 223.25-20 chr3 131469721 131470073 + 0.75 NA intron (NM_007208, intron 7 of 9) intron (NM_007208, intron 7 of 9) 9336 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 219.75-28 chr3 189129383 189129771 + 0.75 NA Intergenic L1MC4a|LINE|L1 -42394 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 239.5 chr1 45437996 45438501 + 0.75 NA intron (NM_001320800, intron 1 of 9) AluSx1|SINE|Alu 52915 NM_007170 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 123.25-17 chr12 51379252 51379484 + 0.75 NA exon (NM_007210, exon 3 of 12) exon (NM_007210, exon 3 of 12) -11949 NM_001267615 9498 Hs.4749 NM_004858 ENSG00000050438 SLC4A8 NBC3|NDCBE solute carrier family 4 member 8 protein-coding 181.75-2 chr1 98693728 98694105 + 0.75 NA intron (NM_015976, intron 4 of 8) intron (NM_015976, intron 4 of 8) 32195 NM_001364903 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 142.5-85 chr7 14576979 14577359 + 0.75 NA intron (NM_001350717, intron 18 of 24) intron (NM_001350717, intron 18 of 24) 264281 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 132-39 chr2 162788740 162788973 + 0.75 NA intron (NR_110258, intron 4 of 4) L1MA9|LINE|L1 19920 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 171.25-31 chr21 27032198 27032532 + 0.75 NA Intergenic Intergenic -65277 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 125-80 chr5 125210656 125210906 + 0.75 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 173950 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 178.75-30 chr2 125844857 125845388 + 0.75 NA Intergenic L1ME5|LINE|L1 272863 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 141.5-52 chr2 17060062 17060365 + 0.75 NA Intergenic Intergenic -394379 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 158.25-5 chr1 168464302 168464729 + 0.75 NA intron (NR_125956, intron 4 of 4) THE1C|LTR|ERVL-MaLR 31129 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 146.25-16 chr11 103658302 103658687 + 0.75 NA Intergenic L1MC3|LINE|L1 -191412 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 140.75-53 chr6 46807206 46807454 + 0.75 NA intron (NM_005588, intron 5 of 13) intron (NM_005588, intron 5 of 13) 13941 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 157.25-43 chr20 42941187 42941562 + 0.75 NA intron (NM_133170, intron 1 of 31) MIRb|SINE|MIR -27369 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 134-70 chr7 47085404 47085609 + 0.75 NA Intergenic Intergenic 379297 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 210-32 chr6 109229202 109229512 + 0.75 NA intron (NR_152435, intron 14 of 45) AluSq|SINE|Alu 63526 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 145.25-59 chr4 100700345 100700807 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -25463 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 147-39 chr2 114196502 114196933 + 0.75 NA Intergenic Intergenic -216733 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 168.25-36 chr21 28422139 28422542 + 0.75 NA Intergenic Intergenic -116978 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 156.75-25 chr13 83904009 83904328 + 0.75 NA Intergenic Intergenic -21694 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 117.25-10 chr1 234648251 234648543 + 0.75 NA intron (NR_125944, intron 1 of 3) intron (NR_125944, intron 1 of 3) 2108 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 140.5-52 chr2 182549071 182549298 + 0.75 NA Intergenic Intergenic -26339 NM_001003683 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 181.25-4 chr10 54632717 54632967 + 0.75 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -24885 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 121.25-48 chr4 10791155 10791457 + 0.75 NA Intergenic MIRb|SINE|MIR -106538 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 161.5-72 chr5 102773459 102773740 + 0.75 NA intron (NR_157231, intron 1 of 14) MER58B|DNA|hAT-Charlie 18294 NM_001364589 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 162-32 chr3 99070222 99070535 + 0.75 NA Intergenic Tigger4|DNA|TcMar-Tigger -168683 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 152.5-29 chr13 35699989 35700306 + 0.75 NA TTS (NR_132115) TTS (NR_132115) 2420 NR_132115 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 147.5-2 chr1 68728591 68728807 + 0.75 NA Intergenic L1MEd|LINE|L1 -231617 NM_001114120 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 241.5-33 chr6 39461777 39462233 + 0.75 NA intron (NM_001289021, intron 12 of 21) Charlie5|DNA|hAT-Charlie -30615 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 136.25-28 chr14 77079882 77080284 + 0.75 NA Intergenic AluSz6|SINE|Alu -3892 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 119.75-12 chr10 67617335 67617579 + 0.75 NA intron (NM_001127384, intron 2 of 17) L1PA13|LINE|L1 48203 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 175.5-6 chr1 171494010 171494509 + 0.75 NA intron (NM_015172, intron 1 of 33) intron (NM_015172, intron 1 of 33) 8729 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 130.5-74 chr5 148286137 148286354 + 0.75 NA TTS (NR_138538) TTS (NR_138538) 17451 NM_001040129 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 145-4 chr10 23561355 23561727 + 0.75 NA Intergenic L1MD1|LINE|L1 122272 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 145.75-5 chr10 108998910 108999161 + 0.75 NA Intergenic Intergenic 924211 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 113-90 chr6 140111576 140111800 + 0.75 NA Intergenic L1M5|LINE|L1 -93564 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 133.75-32 chr16 76633550 76633813 + 0.75 NA Intergenic Intergenic -1317 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 154.5-2 chr1 66229728 66230020 + 0.75 NA intron (NM_001037340, intron 1 of 14) MIRb|SINE|MIR -102234 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 175.75-37 chr4 74734308 74734641 + 0.75 NA Intergenic Intergenic 60049 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 132-84 chr9 93876411 93876722 + 0.75 NA Intergenic L1M4|LINE|L1 57209 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 157-14 chr11 110863427 110863738 + 0.75 NA Intergenic Intergenic -150393 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 137.25-49 chr22 35175386 35175671 + 0.75 NA intron (NR_126356, intron 2 of 5) L2b|LINE|L2 55528 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 158.75-15 chr12 127974323 127974566 + 0.75 NA intron (NR_126452, intron 2 of 3) intron (NR_126452, intron 2 of 3) 9447 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 208.25-43 chr8 101705009 101705422 + 0.75 NA intron (NM_001040624, intron 6 of 7) AluSg|SINE|Alu 85754 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 173-52 chr8 79467842 79468120 + 0.75 NA Intergenic Tigger3c|DNA|TcMar-Tigger 135793 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 142.25-21 chr14 48964116 48964397 + 0.75 NA Intergenic Intergenic 622124 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 115-62 chr5 19129698 19129956 + 0.75 NA Intergenic THE1A|LTR|ERVL-MaLR 756445 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 119-60 chr5 101501861 101502055 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -598676 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 149.75-41 chr3 111963487 111963870 + 0.75 NA intron (NM_001134437, intron 13 of 17) intron (NM_001134437, intron 13 of 17) -15348 NM_018394 55347 Hs.477115 NM_018394 ENSG00000144827 ABHD10 - abhydrolase domain containing 10 protein-coding 135.5-38 chr15 90219765 90219989 + 0.75 NA exon (NM_020210, exon 5 of 15) exon (NM_020210, exon 5 of 15) 14064 NM_006384 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 125.5-17 chr10 58226982 58227274 + 0.75 NA exon (NM_152230, exon 3 of 6) exon (NM_152230, exon 3 of 6) 40766 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 161.75-70 chrX 78275813 78276159 + 0.75 NA intron (NM_001282186, intron 1 of 1) intron (NM_001282186, intron 1 of 1) 51625 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 132.5-90 chr5 36114044 36114289 + 0.75 NA intron (NM_001007527, intron 13 of 17) intron (NM_001007527, intron 13 of 17) 33822 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 132.25-68 chr4 87183967 87184175 + 0.75 NA intron (NM_001292007, intron 2 of 8) MER31A|LTR|ERV1 36197 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 162.5-99 chr9 124562093 124562441 + 0.75 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -54868 NM_004959 2516 Hs.495108 NM_004959 ENSG00000136931 NR5A1 AD4BP|ELP|FTZ1|FTZF1|POF7|SF-1|SF1|SPGF8|SRXX4|SRXY3|hSF-1 nuclear receptor subfamily 5 group A member 1 protein-coding 163-33 chr3 4413707 4413956 + 0.75 NA intron (NM_001164674, intron 5 of 7) AluJr|SINE|Alu 53438 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 178-41 chr4 159911357 159911689 + 0.75 NA Intergenic MIRb|SINE|MIR -133739 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 118.75-93 chr6 140949623 140949883 + 0.75 NA Intergenic Intergenic 265939 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 134.25-29 chr17 10357384 10357654 + 0.75 NA intron (NM_003802, intron 8 of 40) intron (NM_003802, intron 8 of 40) 15487 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 120.75-72 chr4 42220780 42221087 + 0.75 NA Intergenic Intergenic -68278 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 192-3 chr1 200387166 200387535 + 0.75 NA Intergenic AluSg|SINE|Alu -13558 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 166.75-39 chr20 11013100 11013399 + 0.75 NA Intergenic Intergenic -13295 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 210-43 chr8 129048981 129049505 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -83242 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 209-16 chr2 186451293 186451656 + 0.75 NA Intergenic Intergenic -34786 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 171-10 chr10 56198110 56198396 + 0.75 NA Intergenic L1MD2|LINE|L1 163006 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 131.25-84 chr7 108164416 108164594 + 0.75 NA intron (NM_001371175, intron 23 of 25) intron (NM_001371175, intron 23 of 25) -34144 NM_001318047 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 190.25-52 chr9 68915605 68916079 + 0.75 NA intron (NM_003558, intron 8 of 15) intron (NM_003558, intron 8 of 15) 59999 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 150-79 chr8 124390286 124390629 + 0.75 NA Intergenic L1PB3|LINE|L1 -17758 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 123.75-2 chr1 25466792 25467064 + 0.75 NA intron (NM_018202, intron 6 of 10) intron (NM_018202, intron 6 of 10) 36031 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 151.25-39 chr3 83119257 83119549 + 0.75 NA Intergenic Intergenic 1133261 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 129.75-75 chr7 105882955 105883193 + 0.75 NA Intergenic L1ME3G|LINE|L1 -6489 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 152-62 chr8 103326655 103327017 + 0.75 NA intron (NR_133921, intron 4 of 5) L1ME4b|LINE|L1 17858 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 168.25-47 chr4 85062328 85062599 + 0.75 NA Intergenic Intergenic 94979 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 160.75-30 chr2 13329468 13329806 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -322624 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 132.5-114 chr8 100900907 100901146 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie 49545 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 189.5-60 chr7 24682315 24682663 + 0.75 NA intron (NM_016447, intron 12 of 12) L1MEc|LINE|L1 74975 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 168.5-69 chr7 117357685 117357951 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -34760 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 126.25-56 chr22 32606183 32606353 + 0.75 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) 131031 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 146.5-100 chrX 135478633 135478955 + 0.75 NA Intergenic FLAM_A|SINE|Alu -41866 NM_001351605 203522 Hs.496829 NM_182540 ENSG00000165359 INTS6L DDX26B integrator complex subunit 6 like protein-coding 147.25-28 chr2 66170936 66171226 + 0.75 NA Intergenic Intergenic 187247 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 115.5-48 chr2 122302069 122302366 + 0.75 NA Intergenic L1PA15|LINE|L1 546566 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 118-53 chr5 25704936 25705110 + 0.75 NA Intergenic L1MB8|LINE|L1 514070 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 144-16 chr11 104003591 104003919 + 0.75 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -32885 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 141.25-39 chr16 68880883 68881116 + 0.75 NA intron (NM_024562, intron 7 of 17) AluJo|SINE|Alu 37468 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 121-16 chr11 115983832 115984063 + 0.75 NA Intergenic Intergenic -223747 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 121-46 chr3 158908934 158909247 + 0.75 NA Intergenic Intergenic 107036 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 163.75-4 chr1 98451984 98452312 + 0.75 NA Intergenic Intergenic -209573 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 166-3 chr1 199249311 199249730 + 0.75 NA intron (NR_147896, intron 3 of 3) L1MA9|LINE|L1 100922 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 124.25-85 chr9 19225228 19225439 + 0.75 NA Intergenic MIRb|SINE|MIR -5360 NR_073201 55667 Hs.249591 NM_017925 ENSG00000137145 DENND4C C9orf55|C9orf55B|RAB10GEF|bA513M16.3 DENN domain containing 4C protein-coding 205.75-41 chr7 116508297 116508667 + 0.75 NA TTS (NM_198212) TTS (NM_198212) 8436 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 178.25-56 chr6 135866793 135867182 + 0.75 NA intron (NM_018945, intron 1 of 12) intron (NM_018945, intron 1 of 12) 15286 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 150.5-32 chr15 64178998 64179273 + 0.75 NA intron (NM_022048, intron 11 of 11) AluJb|SINE|Alu -15980 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 177.25-39 chr5 25848197 25848664 + 0.75 NA Intergenic Intergenic 657477 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 175.75-45 chr8 31067320 31067592 + 0.75 NA intron (NM_000553, intron 6 of 34) intron (NM_000553, intron 6 of 34) -34100 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 157.75-68 chr6 124721840 124722100 + 0.75 NA intron (NM_001040214, intron 4 of 6) L1MB2|LINE|L1 -240575 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 181.75-44 chr8 125382013 125382307 + 0.75 NA Intergenic Intergenic -48198 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 137.5-29 chr14 51930328 51930598 + 0.75 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -11892 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 261.25-14 chr8 125835505 125836197 + 0.75 NA Intergenic Intergenic 115346 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 189.25-23 chr2 53479967 53480446 + 0.75 NA Intergenic MIR|SINE|MIR -287577 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 125.5-71 chr20 56858145 56858502 + 0.75 NA Intergenic Intergenic 229017 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 135-42 chr2 125853218 125853433 + 0.75 NA Intergenic MIR|SINE|MIR 264660 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 168.25-7 chr10 44087397 44087679 + 0.75 NA Intergenic L1MC5a|LINE|L1 175136 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 122.5-84 chr6 105387182 105387525 + 0.75 NA intron (NM_002726, intron 2 of 14) intron (NM_002726, intron 2 of 14) 15729 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 140.25-52 chr3 42511796 42512144 + 0.75 NA intron (NM_001251884, intron 1 of 11) intron (NM_001251884, intron 1 of 11) 9327 NM_004624 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 114.75-101 chr8 49286755 49287045 + 0.75 NA Intergenic Intergenic 214556 NM_001256597 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 197-27 chr2 137989653 137990086 + 0.75 NA intron (NM_006895, intron 2 of 5) L1MC1|LINE|L1 25396 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 131.5-62 chr3 178604506 178604719 + 0.75 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 45762 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 173.75-60 chr8 138678156 138678453 + 0.75 NA intron (NM_152888, intron 40 of 64) intron (NM_152888, intron 40 of 64) -180574 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 164-18 chr14 41589441 41589799 + 0.75 NA Intergenic Intergenic -17236 NM_001330106 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 176.5-55 chr20 13259489 13259740 + 0.75 NA intron (NM_080826, intron 1 of 5) LTR37B|LTR|ERV1 -19927 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 141-22 chr14 58261593 58261784 + 0.75 NA intron (NR_038123, intron 5 of 9) AluJo|SINE|Alu 16845 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 145.75-69 chr7 114538485 114538879 + 0.75 NA intron (NR_033767, intron 4 of 17) intron (NR_033767, intron 4 of 17) 112180 NM_148899 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 132.75-17 chr10 23892584 23892808 + 0.75 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 197969 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 129.5-4 chr1 45246985 45247262 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -40518 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 222-35 chr5 10062714 10063197 + 0.75 NA Intergenic MER89|LTR|ERV1 -159131 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 259 chr1 96307253 96307882 + 0.75 NA intron (NR_110693, intron 3 of 5) L1PA10|LINE|L1 66558 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 214.25-37 chr5 102536897 102537286 + 0.75 NA Intergenic L1M4b|LINE|L1 -38090 NM_001308014 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 127-83 chr6 53664433 53664731 + 0.75 NA intron (NM_001003760, intron 1 of 2) intron (NM_001003760, intron 1 of 2) 1174 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 129.25-52 chr3 62545166 62545515 + 0.75 NA intron (NM_003716, intron 11 of 29) intron (NM_003716, intron 11 of 29) -171790 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 117-13 chr10 76098136 76098351 + 0.75 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 315482 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 129-72 chr7 49122298 49122644 + 0.75 NA Intergenic L1PB1|LINE|L1 197924 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 171-33 chr20 56047707 56047986 + 0.75 NA Intergenic Intergenic -42327 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 193.5-57 chr4 169695323 169695763 + 0.75 NA intron (NM_001243372, intron 7 of 11) intron (NM_001243372, intron 7 of 11) 35481 NM_001243374 1182 Hs.481186 NM_001829 ENSG00000109572 CLCN3 CLC3|ClC-3 chloride voltage-gated channel 3 protein-coding 154.5-62 chr5 56969105 56969428 + 0.75 NA Intergenic MLT1F1|LTR|ERVL-MaLR -17136 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 147.25-49 chr4 172480179 172480431 + 0.75 NA intron (NM_001034845, intron 5 of 12) AluJr4|SINE|Alu 208612 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 176.75-43 chr5 46073034 46073351 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -376812 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 179.25-57 chr9 127789029 127789345 + 0.75 NA exon (NM_001261, exon 7 of 7) exon (NM_001261, exon 7 of 7) 3153 NM_001261 1025 Hs.150423 NM_001261 ENSG00000136807 CDK9 C-2k|CDC2L4|CTK1|PITALRE|TAK cyclin dependent kinase 9 protein-coding 135.75-114 chrX 78286756 78286939 + 0.75 NA intron (NM_006639, intron 1 of 2) L1M4|LINE|L1 40764 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 134-20 chr11 112003815 112004004 + 0.75 NA intron (NM_001037954, intron 17 of 19) FLAM_A|SINE|Alu -20905 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 131.25-5 chr1 90275501 90275743 + 0.75 NA Intergenic Intergenic 280512 NM_182976 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 172.5-58 chr5 25143229 25143483 + 0.75 NA intron (NR_147006, intron 3 of 4) intron (NR_147006, intron 3 of 4) 47300 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 132.25-71 chr5 26723631 26723913 + 0.75 NA Intergenic L2|LINE|L2 314814 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 121-74 chrX 88384107 88384494 + 0.75 NA Intergenic L1PA17|LINE|L1 -362925 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 179 chr1 195104281 195104696 + 0.75 NA Intergenic Intergenic 984227 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 153.25-21 chr17 56278215 56278587 + 0.75 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 124926 NM_153228 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 121.75-9 chr10 107788550 107788841 + 0.75 NA Intergenic Intergenic 280598 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 178-30 chr20 45127917 45128315 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie -3651 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 132.75-37 chr14 59759784 59760015 + 0.75 NA intron (NM_021136, intron 1 of 8) L1ME4b|LINE|L1 110877 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 156.75-72 chr5 16812819 16813068 + 0.75 NA intron (NM_012334, intron 3 of 40) intron (NM_012334, intron 3 of 40) 123345 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 169-48 chr8 32264568 32265034 + 0.75 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -175945 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 144.75-12 chr10 34183003 34183360 + 0.75 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -410501 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 160-35 chr5 61159283 61159585 + 0.75 NA 3' UTR (NM_001048249, exon 3 of 3) 3' UTR (NM_001048249, exon 3 of 3) -2882 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 174.25-55 chr6 154000101 154000402 + 0.75 NA Intergenic Intergenic -10245 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 212.75-28 chr5 98395484 98395767 + 0.75 NA Intergenic Ricksha_0|DNA|MULE-MuDR -234386 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 113-107 chr9 128581892 128582181 + 0.75 NA intron (NM_003127, intron 12 of 55) intron (NM_003127, intron 12 of 55) 29449 NM_001363759 6709 Hs.372331 NM_003127 ENSG00000197694 SPTAN1 EIEE5|NEAS|SPTA2 spectrin alpha, non-erythrocytic 1 protein-coding 175.5-37 chr17 79308014 79308351 + 0.75 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 207966 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 163-9 chr11 80498643 80498907 + 0.75 NA Intergenic Intergenic 264028 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 123-14 chr12 51685720 51686047 + 0.75 NA intron (NM_001369788, intron 3 of 25) intron (NM_001369788, intron 3 of 25) 94647 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 133.5-100 chr6 74991491 74991862 + 0.75 NA Intergenic Intergenic 137106 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 138.5-73 chr3 129830280 129830531 + 0.75 NA intron (NM_001349263, intron 4 of 7) intron (NM_001349263, intron 4 of 7) -35793 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 170-38 chr4 41365055 41365316 + 0.75 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 4378 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 163.5-67 chr5 61963870 61964208 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -228341 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 146.75-50 chr5 169992419 169992788 + 0.75 NA intron (NR_156756, intron 29 of 52) AluSc5|SINE|Alu -12108 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 113.5-37 chr14 65814578 65814829 + 0.75 NA Intergenic L1ME3C|LINE|L1 343601 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 129.5-79 chr5 130314641 130314991 + 0.75 NA Intergenic L1MEg|LINE|L1 410351 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 134.75-68 chr7 52712674 52712909 + 0.75 NA Intergenic L1MCa|LINE|L1 -322842 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 156.5-35 chr2 124245780 124246024 + 0.75 NA intron (NM_130773, intron 3 of 23) AluJo|SINE|Alu 220615 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 157-57 chr6 136289112 136289419 + 0.75 NA intron (NM_001363659, intron 1 of 11) CpG 581 NM_001363659 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 185.75-53 chr7 36141558 36141936 + 0.75 NA Intergenic Intergenic -11507 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 197-19 chr16 67965061 67965436 + 0.75 NA intron (NM_005072, intron 1 of 23) intron (NM_005072, intron 1 of 23) -1196 NM_001145963 6560 Hs.10094 NM_005072 ENSG00000124067 SLC12A4 CTC-479C5.17|KCC1|hKCC1 solute carrier family 12 member 4 protein-coding 151.5-63 chr5 34569784 34570082 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -86395 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 119.5-114 chr7 41164413 41164622 + 0.75 NA Intergenic Intergenic 62913 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 116.75-68 chr6 64361383 64361618 + 0.75 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 554664 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 217.25-32 chr8 40618131 40618493 + 0.75 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) -274949 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 142.75-17 chr10 63168594 63168947 + 0.75 NA intron (NM_001322258, intron 23 of 24) intron (NM_001322258, intron 23 of 24) 35442 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 143.25-84 chrX 78021723 78021990 + 0.75 NA intron (NM_001282224, intron 13 of 21) MER61B|LTR|ERV1 -52218 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 175-39 chr3 7581209 7581567 + 0.75 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -46104 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 127-41 chr18 77318138 77318387 + 0.75 NA Intergenic Intergenic 68414 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 169.5-60 chr5 5411602 5411996 + 0.75 NA Intergenic Intergenic -10878 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 153.25-25 chr2 35855679 35856028 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 384448 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 127-37 chr17 59907731 59908037 + 0.75 NA intron (NM_001272044, intron 2 of 15) L1MB7|LINE|L1 14763 NM_001369678 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 140.25-72 chr5 144015456 144015702 + 0.75 NA Intergenic Intergenic 155080 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 139-46 chr3 7223156 7223352 + 0.75 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 312030 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 166.75-7 chr10 28293562 28293872 + 0.75 NA intron (NR_134518, intron 1 of 16) L2a|LINE|L2 -4367 NR_107053 102465880 NR_107053 ENSG00000275036 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 134.5-83 chr6 70278181 70278414 + 0.75 NA intron (NM_001851, intron 10 of 37) intron (NM_001851, intron 10 of 37) 4900 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 134-67 chr6 77428279 77428595 + 0.75 NA Intergenic MLT2B4|LTR|ERVL 35585 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 150-3 chr1 43163801 43164195 + 0.75 NA TTS (NM_001159936) TTS (NM_001159936) 7714 NR_106791 102465439 NR_106791 ENSG00000284410 MIR6733 hsa-mir-6733 microRNA 6733 ncRNA 164.5-26 chr16 58437398 58437817 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -26038 NM_020465 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 143.75-50 chr2 156826667 156826933 + 0.75 NA Intergenic Intergenic 390421 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 124.75-38 chr18 9835905 9836129 + 0.75 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -49956 NM_032243 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 132.75-50 chr18 65491078 65491418 + 0.75 NA Intergenic Intergenic -259004 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 118.75-9 chr1 218998050 218998251 + 0.75 NA intron (NR_031644, intron 6 of 6) L1M5|LINE|L1 -79639 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 121.25-34 chr2 111520013 111520221 + 0.75 NA Intergenic Intergenic -24956 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 116.5-7 chr1 176670270 176670548 + 0.75 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 207234 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 235.5-10 chr10 17433827 17434377 + 0.75 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 20493 NM_001004470 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 114.25-59 chr2 106660862 106661171 + 0.75 NA Intergenic Intergenic 173652 NM_001368307 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 120.5-49 chr2 146967776 146968108 + 0.75 NA Intergenic LTR50|LTR|ERVL 380885 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 144.25-7 chr1 221818544 221818802 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 21993 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 243.75-24 chr5 86629033 86629517 + 0.75 NA Intergenic Intergenic 8769 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 131.75-70 chr6 114900031 114900258 + 0.75 NA Intergenic Charlie3|DNA|hAT-Charlie 743691 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 130.25-52 chr20 7099224 7099503 + 0.75 NA Intergenic L1MA1|LINE|L1 154839 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 146.25-40 chr2 134549144 134549398 + 0.75 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 169729 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 193.25-12 chr15 59326118 59326375 + 0.75 NA intron (NM_004998, intron 1 of 27) AluSc|SINE|Alu 46625 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 204.25-35 chr22 47731581 47732080 + 0.75 NA intron (NR_122046, intron 7 of 8) L2|LINE|L2 100156 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 144.5-36 chr14 31464752 31465073 + 0.75 NA Intergenic AluJb|SINE|Alu -7406 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 128.5-42 chr2 62325870 62326051 + 0.75 NA Intergenic LTR10E|LTR|ERV1 110439 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 186.5-48 chr5 52469504 52469922 + 0.75 NA Intergenic Intergenic -318203 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 141.25-12 chr10 86134514 86134822 + 0.75 NA intron (NM_017551, intron 4 of 15) L2c|LINE|L2 130120 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 181.5-2 chr1 203195583 203195995 + 0.75 NA Intergenic Intergenic -9085 NM_001276 1116 Hs.382202 NM_001276 ENSG00000133048 CHI3L1 ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 chitinase 3 like 1 protein-coding 131.5-93 chr8 105946823 105947065 + 0.75 NA intron (NR_125797, intron 1 of 4) L1MEd|LINE|L1 113559 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 136.5-47 chr17 81083291 81083666 + 0.75 NA intron (NM_001144888, intron 3 of 13) intron (NM_001144888, intron 3 of 13) 41895 NR_030394 724027 NR_030394 ENSG00000207736 MIR657 MIRN657|hsa-mir-657 microRNA 657 ncRNA 179-28 chr18 59587159 59587552 + 0.75 NA intron (NM_133459, intron 2 of 10) L1M5|LINE|L1 110068 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 121.5-73 chr20 56261201 56261562 + 0.75 NA Intergenic Intergenic 12649 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 181.25-18 chr15 63553870 63554235 + 0.75 NA intron (NM_001256702, intron 3 of 13) intron (NM_001256702, intron 3 of 13) -43335 NM_001367809 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 149.25-49 chr5 19852552 19852752 + 0.75 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 33620 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 162-65 chrX 103182724 103182957 + 0.75 NA Intergenic Intergenic -32252 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 125.5-129 chr9 35387097 35387345 + 0.75 NA intron (NM_001371186, intron 23 of 38) intron (NM_001371186, intron 23 of 38) -19534 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 187.75-28 chr21 29764254 29764613 + 0.75 NA TTS (NR_027021) TTS (NR_027021) 16258 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 124.5-111 chr9 69858724 69858905 + 0.75 NA TTS (NR_131757) TTS (NR_131757) 37997 NM_001308086 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 145.75-23 chr17 73730946 73731179 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -6792 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 245.5-19 chr3 9191341 9191805 + 0.75 NA promoter-TSS (NR_121663) promoter-TSS (NR_121663) -920 NR_121663 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 138-66 chr6 63713802 63714012 + 0.75 NA 3' UTR (NM_015153, exon 15 of 15) 3' UTR (NM_015153, exon 15 of 15) 67381 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 124-68 chr6 138918181 138918487 + 0.75 NA intron (NM_001128617, intron 11 of 18) MER2|DNA|TcMar-Tigger 69927 NM_001286612 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 124-24 chr18 21705997 21706220 + 0.75 NA Intergenic AluSq2|SINE|Alu -1334 NM_138340 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 120.75-65 chr3 58487859 58488125 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -4104 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 134.5-47 chr2 220321317 220321504 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -414845 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 190.75-22 chr14 87985671 87986027 + 0.75 NA intron (NM_000153, intron 4 of 16) intron (NM_000153, intron 4 of 16) 7333 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 201-28 chr22 26896772 26897220 + 0.75 NA Intergenic Intergenic -6296 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 144-66 chr6 143101415 143101783 + 0.75 NA intron (NM_001366344, intron 2 of 6) intron (NM_001366344, intron 2 of 6) -24540 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 143-27 chr16 12168309 12168775 + 0.75 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 191808 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 146.75-56 chr6 141903627 141903862 + 0.75 NA Intergenic Intergenic 185055 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 160-18 chr2 76250324 76250680 + 0.75 NA Intergenic MER47C|DNA|TcMar-Tigger -539587 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 136.25-4 chr1 69774014 69774225 + 0.75 NA intron (NM_001370785, intron 3 of 26) HAL1|LINE|L1 -145203 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 179-17 chr12 77835624 77835915 + 0.75 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 4875 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 124.25-76 chr8 16743292 16743596 + 0.75 NA Intergenic Intergenic 258901 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 115.75-39 chr19 32036838 32037069 + 0.75 NA intron (NR_110674, intron 1 of 2) intron (NR_110674, intron 1 of 2) 11091 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 134.5-67 chr3 190805460 190805826 + 0.75 NA Intergenic Intergenic 57051 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 148.25-48 chr3 31555996 31556427 + 0.75 NA intron (NM_178862, intron 1 of 15) L1MA4A|LINE|L1 23286 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 153.25-20 chr16 14237502 14237872 + 0.75 NA intron (NM_001308142, intron 9 of 16) L2a|LINE|L2 51001 NM_001365414 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 128.25-49 chr3 165280544 165280894 + 0.75 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 73759 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 115.5-91 chr7 112796386 112796568 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -6054 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 154.5-61 chr5 40813568 40813790 + 0.75 NA Intergenic LTR53|LTR|ERVL -15484 NM_001355034 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 162.5-56 chr3 87792046 87792277 + 0.75 NA promoter-TSS (NM_001322208) promoter-TSS (NM_001322208) -545 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 187.25-59 chr6 157198543 157199043 + 0.75 NA intron (NM_020732, intron 16 of 19) intron (NM_020732, intron 16 of 19) 125466 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 124-38 chr22 24906552 24906869 + 0.75 NA intron (NM_001098498, intron 20 of 23) AluSx|SINE|Alu 39985 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 159.5-17 chr12 10770680 10771148 + 0.75 NA intron (NR_120463, intron 2 of 6) intron (NR_120463, intron 2 of 6) 20680 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 129-42 chr21 20998648 20998997 + 0.75 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 413 NM_001352592 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 127.25-47 chr2 58739405 58739574 + 0.75 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 218736 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 163.75-2 chr1 67424730 67424994 + 0.75 NA intron (NM_001018068, intron 4 of 7) intron (NM_001018068, intron 4 of 7) 5540 NM_001018069 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 145-56 chr5 163982012 163982307 + 0.75 NA Intergenic L2c|LINE|L2 476540 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 115.25-35 chr15 97573966 97574208 + 0.75 NA Intergenic Intergenic -13389 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 116.75-56 chr4 81065724 81065884 + 0.75 NA Intergenic Intergenic 35096 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 131.75-5 chr1 116948488 116948714 + 0.75 NA intron (NM_020440, intron 3 of 8) intron (NM_020440, intron 3 of 8) 38685 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 142.5-62 chr4 58202901 58203166 + 0.75 NA Intergenic Intergenic 333295 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 141.25-62 chr6 43437220 43437587 + 0.75 NA intron (NM_033450, intron 4 of 19) intron (NM_033450, intron 4 of 19) 2861 NR_106894 102466746 NR_106894 ENSG00000276770 MIR6780B hsa-mir-6780b microRNA 6780b ncRNA 128.25-43 chr22 43791194 43791500 + 0.75 NA intron (NM_022785, intron 2 of 31) AluSz|SINE|Alu 20958 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 205.75-36 chr6 40535461 40535774 + 0.75 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 51747 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 172.75-3 chr1 117832217 117832737 + 0.75 NA Intergenic Intergenic 97144 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 135-59 chr5 42236728 42236956 + 0.75 NA Intergenic Intergenic -61497 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 187.75-16 chr15 38565077 38565535 + 0.75 NA promoter-TSS (NM_005739) promoter-TSS (NM_005739) -492 NM_001306086 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 140-50 chr5 42241576 42241881 + 0.75 NA Intergenic L1ME3D|LINE|L1 -66383 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 180-25 chr16 13114550 13114836 + 0.75 NA intron (NM_001145204, intron 2 of 4) L1ME3Cz|LINE|L1 213095 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 113.25-35 chr13 98283934 98284303 + 0.75 NA intron (NM_005766, intron 2 of 26) MER30|DNA|hAT-Charlie 75594 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 121-49 chr3 180153322 180153616 + 0.75 NA Intergenic MIR|SINE|MIR -116532 NM_001256752 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 114-77 chr6 116860228 116860424 + 0.75 NA Intergenic L1ME3|LINE|L1 -16916 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 151.75-27 chr14 53356297 53356553 + 0.75 NA Intergenic Intergenic 203071 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 187.5-24 chr14 81975504 81975878 + 0.75 NA Intergenic Intergenic -232553 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 159.5-23 chr13 107918765 107919051 + 0.75 NA Intergenic Intergenic -51412 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 160-14 chr15 68281467 68281791 + 0.75 NA intron (NM_015322, intron 1 of 1) AluYm1|SINE|Alu 3884 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 196.5-17 chr10 111875888 111876327 + 0.75 NA Intergenic L2b|LINE|L2 307658 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 155.75-14 chr13 113062735 113063110 + 0.75 NA intron (NM_001366646, intron 3 of 27) intron (NM_001366646, intron 3 of 27) 18276 NM_001366645 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 126-50 chr2 164540989 164541209 + 0.75 NA intron (NM_004490, intron 3 of 13) intron (NM_004490, intron 3 of 13) 27396 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 156.25-10 chr11 33092929 33093137 + 0.75 NA intron (NM_001326, intron 15 of 20) L1MB7|LINE|L1 16883 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 148.25-21 chr14 56578377 56578643 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -1288 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 215.5-49 chr8 90590577 90590917 + 0.75 NA Intergenic Intergenic 15316 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 126.5-3 chr1 43170566 43171001 + 0.75 NA TTS (NR_106791) TTS (NR_106791) 929 NR_106791 102465439 NR_106791 ENSG00000284410 MIR6733 hsa-mir-6733 microRNA 6733 ncRNA 128.75-34 chr18 56483097 56483305 + 0.75 NA Intergenic L1MC5|LINE|L1 155391 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 143.25-45 chr3 6171520 6171720 + 0.75 NA Intergenic MLT2B1|LTR|ERVL 633829 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 173.75-59 chr8 127390439 127390745 + 0.75 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -9807 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 156.25-12 chr11 112019915 112020264 + 0.75 NA 3' UTR (NM_033425, exon 16 of 16) 3' UTR (NM_033425, exon 16 of 16) -4725 NM_001931 1737 Hs.335551 NM_001931 ENSG00000150768 DLAT DLTA|E2|PDC-E2|PDCE2 dihydrolipoamide S-acetyltransferase protein-coding 114.75-102 chr8 71551527 71551771 + 0.75 NA Intergenic Intergenic -3555 NM_001370335 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 114-39 chr15 88577407 88577641 + 0.75 NA Intergenic AluSc8|SINE|Alu 27079 NR_120369 101929743 Hs.558810 NR_120369 ENSG00000249487 LINC01586 - long intergenic non-protein coding RNA 1586 ncRNA 147-62 chr5 14439475 14439799 + 0.75 NA intron (NM_007118, intron 34 of 56) intron (NM_007118, intron 34 of 56) -24346 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 129.75-79 chr8 88525439 88525699 + 0.75 NA Intergenic L1PA13|LINE|L1 -198086 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 135.75-32 chr14 81855985 81856274 + 0.75 NA Intergenic MER57-int|LTR|ERV1 -112991 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 157.75-5 chr1 24815542 24815886 + 0.75 NA intron (NM_013943, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 70267 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 223.25-27 chr6 151593706 151594123 + 0.75 NA intron (NM_025059, intron 8 of 10) MLT1J|LTR|ERVL-MaLR -96582 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 195.5-33 chr18 44035049 44035424 + 0.75 NA Intergenic Intergenic 496461 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 119.75-78 chr7 73688467 73688695 + 0.75 NA intron (NR_045512, intron 5 of 10) intron (NR_045512, intron 5 of 10) 4984 NM_017528 114049 Hs.647063 NM_017528 ENSG00000071462 BUD23 HASJ4442|HUSSY-3|MERM1|PP3381|WBMT|WBSCR22 BUD23 rRNA methyltransferase and ribosome maturation factor protein-coding 149.25-8 chr10 98377816 98378085 + 0.75 NA Intergenic (CTTTCC)n|Simple_repeat|Simple_repeat 17357 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 228.5-26 chr20 55228033 55228366 + 0.75 NA Intergenic Intergenic -194844 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 184-37 chr3 190423214 190423571 + 0.75 NA Intergenic Intergenic 26484 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 140.5-84 chr5 90299861 90300178 + 0.75 NA Intergenic Intergenic -9948 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 137-17 chr12 13535971 13536302 + 0.75 NA Intergenic MIRb|SINE|MIR -159391 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 151.25-24 chr16 54144285 54144604 + 0.75 NA Intergenic Intergenic 105051 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 217-28 chr8 11009549 11009999 + 0.75 NA intron (NM_173683, intron 1 of 2) L1MC3|LINE|L1 25528 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 196-43 chr8 82331102 82331585 + 0.75 NA Intergenic Intergenic -489057 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 159-58 chr7 29556536 29556859 + 0.75 NA Intergenic L2|LINE|L2 -7138 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 182.5-59 chr5 140253232 140253725 + 0.75 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 49623 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 175.5-27 chr15 39290067 39290414 + 0.75 NA Intergenic Intergenic 39571 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 188.25-3 chr1 220870046 220870364 + 0.75 NA intron (NR_046901, intron 1 of 2) L3|LINE|CR1 -9238 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 125.25-39 chr2 73564319 73564640 + 0.75 NA intron (NM_015120, intron 15 of 22) AluSz|SINE|Alu 77943 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 126.25-51 chr2 234526277 234526547 + 0.75 NA Intergenic Helitron3Na_Mam|RC|Helitron -29331 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 173.25-16 chr14 58833277 58833578 + 0.75 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 5139 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 197.75-39 chr5 55886483 55886842 + 0.75 NA intron (NM_001297572, intron 5 of 10) intron (NM_001297572, intron 5 of 10) 33340 NM_001242636 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 196.25-57 chr6 128595493 128595964 + 0.75 NA Intergenic Intergenic -75129 NM_001135648 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 195.5-61 chr4 60502388 60502773 + 0.75 NA Intergenic Intergenic -420039 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 216.5-3 chr10 35696926 35697366 + 0.75 NA Intergenic Intergenic -55712 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 168.75-26 chr2 107448690 107448948 + 0.75 NA Intergenic L1MCb|LINE|L1 -80600 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 159.75-33 chr22 39587216 39587485 + 0.75 NA intron (NM_001003406, intron 1 of 35) intron (NM_001003406, intron 1 of 35) 16597 NM_001003406 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 149.25-12 chr10 132488803 132489053 + 0.75 NA Intergenic Intergenic 43739 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 118.75-80 chr4 93902182 93902415 + 0.75 NA Intergenic Intergenic 73545 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 182-28 chr20 49727717 49728120 + 0.75 NA Intergenic Intergenic -14040 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 201-8 chr10 108477303 108477805 + 0.75 NA Intergenic Intergenic -408261 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 129-60 chr6 5150170 5150403 + 0.75 NA intron (NM_001164841, intron 2 of 3) intron (NM_001164841, intron 2 of 3) -1964 NR_037462 100500900 NR_037462 ENSG00000265083 MIR3691 mir-3691 microRNA 3691 ncRNA 158-62 chr8 5027008 5027271 + 0.75 NA Intergenic L2a|LINE|L2 -32225 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 191.25-52 chr5 80224788 80225142 + 0.75 NA intron (NR_126061, intron 1 of 13) AluSq2|SINE|Alu 31083 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 118.5-50 chr18 9900530 9900733 + 0.75 NA Intergenic Intergenic -13385 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 252.75-20 chr3 117119890 117120502 + 0.75 NA Intergenic Intergenic 198765 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 120-39 chr17 61508036 61508347 + 0.75 NA Intergenic L1ME3B|LINE|L1 51703 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 235.75-27 chr7 108723549 108724148 + 0.75 NA Intergenic Intergenic 153974 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 120.75-15 chr11 78719449 78719801 + 0.75 NA intron (NM_001098816, intron 25 of 33) intron (NM_001098816, intron 25 of 33) -144761 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 113-76 chr5 20415410 20415616 + 0.75 NA intron (NM_001349558, intron 1 of 15) AluY|SINE|Alu 109962 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 113.5-59 chr2 104718174 104718402 + 0.75 NA Intergenic L1MA2|LINE|L1 39431 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 153.5-42 chr2 35677290 35677634 + 0.75 NA Intergenic Intergenic 206057 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 120-27 chr14 52641060 52641406 + 0.75 NA 3' UTR (NM_014584, exon 16 of 16) 3' UTR (NM_014584, exon 16 of 16) 54325 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 174.5-51 chr22 26705888 26706256 + 0.75 NA intron (NR_110543, intron 1 of 5) L1ME2z|LINE|L1 33229 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 121.5-113 chr9 75294959 75295146 + 0.75 NA Intergenic L1MA1|LINE|L1 206538 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 124.75-66 chr4 179895929 179896247 + 0.75 NA Intergenic Intergenic 1263061 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 150.25-43 chr2 189402806 189403169 + 0.75 NA Intergenic L1PA11|LINE|L1 -38446 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 113.25-78 chr20 61198627 61198808 + 0.75 NA Intergenic Intergenic -53544 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 160.5-58 chr5 56806434 56806814 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -8925 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 154.5-80 chrX 55363689 55364016 + 0.75 NA Intergenic Intergenic 83764 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 213.5-22 chr18 8943389 8943886 + 0.75 NA Intergenic AluSq2|SINE|Alu -159062 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 121-65 chr6 166330115 166330288 + 0.75 NA exon (NM_145169, exon 2 of 8) exon (NM_145169, exon 2 of 8) 12344 NR_130114 113402 Hs.487143 NM_145169 ENSG00000198818 SFT2D1 C6orf83|pRGR1 SFT2 domain containing 1 protein-coding 210.5-56 chr7 76353235 76353620 + 0.75 NA intron (NM_012479, intron 1 of 1) AluSx3|SINE|Alu 5564 NM_012479 7532 Hs.744840 NM_012479 ENSG00000170027 YWHAG 14-3-3GAMMA|EIEE56|PPP1R170 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma protein-coding 128.75-63 chr3 120225038 120225317 + 0.75 NA intron (NM_001168271, intron 2 of 8) intron (NM_001168271, intron 2 of 8) 19118 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 178.75-33 chr2 206169543 206169994 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR 7540 NR_002590 619569 Hs.742407 NR_002590 ENSG00000207406 SNORA41 ACA41|SNORA41A small nucleolar RNA, H/ACA box 41 snoRNA 123.75-13 chr10 32436847 32437120 + 0.75 NA intron (NR_120660, intron 2 of 2) L1ME1|LINE|L1 9073 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 170.5-38 chr19 9244117 9244419 + 0.75 NA Intergenic L1MB3|LINE|L1 -6776 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 119.75-26 chr14 62587555 62587899 + 0.75 NA Intergenic L1ME2z|LINE|L1 -447754 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 132.25-50 chr2 207210023 207210423 + 0.75 NA intron (NR_110283, intron 3 of 3) L1PA16|LINE|L1 -29588 NR_146555 105373853 Hs.678559 NR_146555 ENSG00000229647 MYOSLID - myocardin-induced smooth muscle lncRNA, inducer of differentiation ncRNA 150.75-24 chr18 467278 467512 + 0.75 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 33306 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 152.5-62 chr20 54744696 54745067 + 0.75 NA Intergenic Intergenic 269288 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 173-38 chr3 10531484 10531763 + 0.75 NA intron (NM_001353564, intron 2 of 20) intron (NM_001353564, intron 2 of 20) -26037 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 167-48 chr4 72725543 72725911 + 0.75 NA Intergenic L1MC4|LINE|L1 -156506 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 131.5-15 chr11 8305070 8305252 + 0.75 NA Intergenic L1MEd|LINE|L1 -36374 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 251.5-23 chr4 60958052 60958527 + 0.75 NA Intergenic MLT2D|LTR|ERVL 35670 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 140.25-75 chr6 49580814 49581185 + 0.75 NA Intergenic L2a|LINE|L2 30331 NR_146854 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 113.75-74 chr3 115186212 115186483 + 0.75 NA Intergenic MER4-int|LTR|ERV1 -39059 NM_001348803 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 126-36 chr17 62879392 62879631 + 0.75 NA Intergenic L1MB8|LINE|L1 -64704 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 145.5-65 chr3 159855278 159855488 + 0.75 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 15522 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 132.25-92 chr9 1564679 1564882 + 0.75 NA Intergenic L1ME4a|LINE|L1 -450567 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 136.25-62 chr4 94810243 94810440 + 0.75 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 52386 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 116-55 chr5 28724335 28724530 + 0.75 NA Intergenic Intergenic -202438 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 113.25-112 chr8 69427231 69427422 + 0.75 NA intron (NR_110433, intron 3 of 3) intron (NR_110433, intron 3 of 3) 20918 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 142.5-42 chr2 76307541 76307982 + 0.75 NA Intergenic Intergenic -596846 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 162.5-63 chr4 178570109 178570522 + 0.75 NA Intergenic Intergenic -662379 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 140.5-41 chr2 62491478 62491746 + 0.75 NA Intergenic MIR|SINE|MIR 14583 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 123.25-13 chr10 70321317 70321504 + 0.75 NA intron (NM_018205, intron 3 of 3) intron (NM_018205, intron 3 of 3) -37406 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 136-28 chr19 28140021 28140291 + 0.75 NA Intergenic L1MB7|LINE|L1 -346216 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 113.75-99 chr7 102460201 102460550 + 0.75 NA intron (NM_017621, intron 1 of 2) intron (NM_017621, intron 1 of 2) 4488 NM_017621 54784 Hs.658598 NM_017621 ENSG00000160993 ALKBH4 ABH4 alkB homolog 4, lysine demethylase protein-coding 124.5-9 chr1 203499499 203499694 + 0.75 NA intron (NM_014359, intron 4 of 7) intron (NM_014359, intron 4 of 7) 5443 NM_014359 26254 Hs.632468 NM_014359 ENSG00000188770 OPTC OPT opticin protein-coding 131-16 chr12 33117948 33118163 + 0.75 NA Intergenic Intergenic -221209 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 124.25-28 chr13 106553027 106553291 + 0.75 NA intron (NM_018011, intron 3 of 3) L1ME4a|LINE|L1 14978 NM_018011 55082 Hs.508644 NM_018011 ENSG00000134884 ARGLU1 - arginine and glutamate rich 1 protein-coding 143.75-20 chr11 38179228 38179545 + 0.75 NA Intergenic Intergenic 240785 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 129.5-62 chr3 87397228 87397495 + 0.75 NA Intergenic Intergenic -120777 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 137.5-85 chr4 88120328 88120519 + 0.75 NA intron (NM_001257386, intron 6 of 15) THE1B-int|LTR|ERVL-MaLR 38216 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 112.75-11 chr10 56666298 56666502 + 0.75 NA Intergenic L1MB5|LINE|L1 -305127 NM_001005413 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 143-37 chr2 84032995 84033273 + 0.75 NA Intergenic Intergenic -257548 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 114.75-80 chr5 132267203 132267541 + 0.75 NA intron (NM_001131027, intron 3 of 5) intron (NM_001131027, intron 3 of 5) 9676 NM_003687 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 159.5-60 chr3 101731438 101731775 + 0.75 NA intron (NM_024548, intron 4 of 10) MIR3|SINE|MIR 6992 NM_024548 79598 Hs.444135 NM_024548 ENSG00000182504 CEP97 2810403B08Rik|LRRIQ2 centrosomal protein 97 protein-coding 184-17 chr15 34762271 34762622 + 0.75 NA intron (NR_120329, intron 1 of 2) L2c|LINE|L2 7362 NR_120329 101928174 Hs.680670 NR_120329 ENSG00000250007 LOC101928174 - uncharacterized LOC101928174 ncRNA 170.5-24 chr12 120320602 120320829 + 0.75 NA Intergenic AluJr|SINE|Alu 7064 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 148.5-91 chr6 124665562 124665818 + 0.75 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -296855 NR_136734 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 134.75-51 chr3 113924665 113924976 + 0.75 NA intron (NM_001172105, intron 5 of 12) L1HS|LINE|L1 -23081 NM_001363952 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 127-43 chr19 47808934 47809254 + 0.75 NA Intergenic Intergenic -5490 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 119.5-32 chr14 25713376 25713729 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -663255 NM_001304476 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 217.25-39 chrX 87311466 87311932 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger -206103 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 160.5-82 chr9 89359494 89359742 + 0.75 NA TTS (NM_001282690) TTS (NM_001282690) 40767 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 201.25-2 chr1 244487498 244487922 + 0.75 NA intron (NM_001242340, intron 4 of 18) MER45C|DNA|hAT-Tip100 26339 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 197-3 chr1 219930724 219931193 + 0.75 NA Intergenic Intergenic -2307 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 191.25-34 chr2 144732361 144732799 + 0.75 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 64613 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 143.5-93 chr7 77754573 77754852 + 0.75 NA intron (NM_198467, intron 3 of 7) intron (NM_198467, intron 3 of 7) 43722 NM_032936 85025 Hs.19025 NM_032936 ENSG00000135211 TMEM60 C7orf35|DC32 transmembrane protein 60 protein-coding 244.25-20 chr4 148967533 148968048 + 0.75 NA Intergenic L1MDb|LINE|L1 -25412 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 137.75-68 chr5 54686537 54686799 + 0.75 NA intron (NR_104658, intron 1 of 2) L1PA4|LINE|L1 16656 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 119.75-23 chr13 112601505 112601863 + 0.75 NA Intergenic Intergenic -13499 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 165.5-15 chr11 95821869 95822206 + 0.75 NA intron (NM_001243777, intron 7 of 9) intron (NM_001243777, intron 7 of 9) 31539 NM_014679 9702 Hs.101014 NM_014679 ENSG00000166037 CEP57 MVA2|PIG8|TSP57 centrosomal protein 57 protein-coding 137.75-88 chr8 126477970 126478222 + 0.75 NA Intergenic LTR16A|LTR|ERVL 80382 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 120.5-110 chr8 130524397 130524576 + 0.75 NA Intergenic AluJr|SINE|Alu -80812 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 237.25-33 chr9 100669035 100669465 + 0.75 NA Intergenic L1MA3|LINE|L1 91171 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 135.25-31 chr16 745018 745305 + 0.75 NA Intergenic AluSq|SINE|Alu -4164 NM_022493 64428 Hs.513247 NM_022493 ENSG00000103245 CIAO3 HPRN|IOP1|LET1L|NAR1|NARFL|PRN cytosolic iron-sulfur assembly component 3 protein-coding 155.75-34 chr22 47743641 47743867 + 0.75 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 112080 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 132.25-15 chr11 32898677 32898976 + 0.75 NA intron (NM_001076786, intron 1 of 12) AluJr|SINE|Alu 6015 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 134.25-67 chr5 27499967 27500197 + 0.75 NA Intergenic Intergenic 27790 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 133.75-56 chr3 40352798 40353053 + 0.75 NA Intergenic L2a|LINE|L2 -34259 NM_001248 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 116.5-110 chr7 43017007 43017244 + 0.75 NA Intergenic Intergenic 84749 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 115.5-17 chr11 85644607 85644850 + 0.75 NA Intergenic L1MEb|LINE|L1 -3191 NM_001244735 84233 Hs.533725 NM_032273 ENSG00000171202 TMEM126A OPA7 transmembrane protein 126A protein-coding 180.25-24 chr18 7946342 7946630 + 0.75 NA intron (NM_002845, intron 5 of 30) intron (NM_002845, intron 5 of 30) 379170 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 132.5-7 chr1 229563593 229563986 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -5082 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 137-18 chr12 40527833 40528159 + 0.75 NA intron (NM_173600, intron 112 of 173) intron (NM_173600, intron 112 of 173) 134602 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 162.25-22 chr2 47652394 47652793 + 0.75 NA Intergenic OldhAT1|DNA|hAT-Ac -82262 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 157.25-11 chr10 117099517 117099916 + 0.75 NA intron (NM_001258300, intron 1 of 17) L2a|LINE|L2 26870 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 128.75-57 chr3 62394398 62394704 + 0.75 NA Intergenic Intergenic -21001 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 115.25-30 chr13 59363284 59363506 + 0.75 NA Intergenic Intergenic -649323 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 178-33 chr3 51836455 51836884 + 0.75 NA Intergenic LTR16C|LTR|ERVL 9786 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 157.5-66 chr3 73631180 73631463 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -6380 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 154.75-35 chr2 232996947 232997199 + 0.75 NA intron (NM_019850, intron 1 of 14) intron (NM_019850, intron 1 of 14) -15541 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 163.25-18 chr12 65499744 65500072 + 0.75 NA non-coding (NR_120433, exon 5 of 5) non-coding (NR_120433, exon 5 of 5) 57403 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 133-23 chr15 58789830 58790051 + 0.75 NA intron (NM_001040450, intron 2 of 8) AluSp|SINE|Alu 18638 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 152.75-29 chr2 58949366 58949820 + 0.75 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -268115 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 227.25-5 chr10 95974303 95974616 + 0.75 NA intron (NM_001349008, intron 17 of 34) intron (NM_001349008, intron 17 of 34) -25632 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 122.5-42 chr18 51265769 51266018 + 0.75 NA Intergenic L1MA9|LINE|L1 -68212 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 134.5-38 chr19 17412542 17412883 + 0.75 NA intron (NR_130765, intron 3 of 4) LTR34|LTR|ERV1 6971 NM_001304547 93343 Hs.515243 NM_138401 ENSG00000141971 MVB12A CFBP|FAM125A multivesicular body subunit 12A protein-coding 113-61 chr3 72206908 72207089 + 0.75 NA Intergenic Intergenic 55741 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 128.25-8 chr1 229764306 229764621 + 0.75 NA Intergenic L1MB3|LINE|L1 121355 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 151-73 chr9 87832196 87832436 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner -12429 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 135.25-84 chr6 8459470 8459929 + 0.75 NA intron (NR_038980, intron 2 of 4) AluSx1|SINE|Alu 24076 NR_038980 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 183.5-74 chr7 55411016 55411515 + 0.75 NA intron (NM_018697, intron 5 of 8) intron (NM_018697, intron 5 of 8) 45817 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 124.5-27 chr13 71126021 71126360 + 0.75 NA intron (NR_047699, intron 1 of 3) L1M4b|LINE|L1 111049 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 203.25-50 chr7 78365630 78365947 + 0.75 NA intron (NM_001301128, intron 7 of 20) intron (NM_001301128, intron 7 of 20) 18546 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 168.25-66 chr8 136708621 136709013 + 0.75 NA intron (NR_147196, intron 2 of 5) AluSx3|SINE|Alu 178019 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 190-25 chr2 99524096 99524511 + 0.75 NA Intergenic MLT1E2|LTR|ERVL-MaLR -34286 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 143.5-94 chr7 84711284 84711633 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR 178982 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 115-13 chr10 86837611 86837868 + 0.75 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 81100 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 127.25-100 chr9 92036100 92036465 + 0.75 NA intron (NM_001368273, intron 14 of 15) intron (NM_001368273, intron 14 of 15) 79131 NM_001368272 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 122.25-45 chr2 19604407 19604642 + 0.75 NA Intergenic L1PA11|LINE|L1 -245901 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 126.25-87 chr8 92719870 92720061 + 0.75 NA intron (NR_046114, intron 1 of 2) L2c|LINE|L2 -64471 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 197-25 chr2 75657609 75658023 + 0.75 NA 3' UTR (NM_014763, exon 6 of 6) 3' UTR (NM_014763, exon 6 of 6) 11033 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 161.25-42 chr2 80526965 80527283 + 0.75 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 213745 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 190.75-39 chr4 105542142 105542472 + 0.75 NA Intergenic Intergenic -10313 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 178-19 chr14 80114092 80114412 + 0.75 NA Intergenic Charlie13a|DNA|hAT-Charlie -97167 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 123.5-20 chr11 65759796 65759987 + 0.75 NA Intergenic AluJb|SINE|Alu 21085 NM_138368 91056 Hs.591957 NM_138368 ENSG00000254470 AP5B1 AP-5|PP1030 adaptor related protein complex 5 subunit beta 1 protein-coding 156.75-61 chr3 100317508 100317971 + 0.75 NA intron (NM_001199198, intron 16 of 18) intron (NM_001199198, intron 16 of 18) -17018 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 148.25-18 chr12 67309943 67310432 + 0.75 NA exon (NM_001329675, exon 14 of 16) exon (NM_001329675, exon 14 of 16) 40829 NM_001329674 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 118.5-27 chr11 116254248 116254533 + 0.75 NA Intergenic Intergenic -385032 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 163.75-67 chr7 44366127 44366531 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -40698 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 148.75-44 chr3 104562341 104562666 + 0.75 NA Intergenic Intergenic -804210 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 197.5-23 chr16 80661770 80662106 + 0.75 NA intron (NM_152342, intron 2 of 6) L2b|LINE|L2 -89130 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 112.75-29 chr13 35030898 35031210 + 0.75 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 88767 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 211-38 chr8 142069389 142069835 + 0.75 NA Intergenic AluSq2|SINE|Alu -106727 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 133.5-98 chr6 38807796 38808073 + 0.75 NA intron (NM_001371, intron 23 of 91) L1ME3D|LINE|L1 92623 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 184-42 chr5 25414383 25414870 + 0.75 NA Intergenic Intergenic 223673 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 122.25-51 chr2 58050992 58051251 + 0.75 NA intron (NM_001130483, intron 2 of 13) AluSx1|SINE|Alu 4409 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 116.5-31 chr13 32837262 32837475 + 0.75 NA intron (NR_047020, intron 4 of 4) Arthur1C|DNA|hAT-Tip100 74284 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 147.25-29 chr2 69567667 69567937 + 0.75 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) -47631 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 180-21 chr14 53792909 53793261 + 0.75 NA Intergenic Intergenic 155399 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 143.75-78 chr7 57954319 57954639 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 504302 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 163.25-20 chr12 113005685 113006081 + 0.75 NA intron (NM_002535, intron 7 of 9) AluJr|SINE|Alu 27364 NM_016817 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 139.75-15 chr11 58295215 58295620 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger -27157 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 159-55 chr6 143511787 143512134 + 0.75 NA promoter-TSS (NM_032020) promoter-TSS (NM_032020) -240 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 154.25-33 chr16 86138221 86138487 + 0.75 NA Intergenic Intergenic -57827 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 181.5-20 chr15 76555176 76555502 + 0.75 NA intron (NR_148227, intron 23 of 32) L1PA15|LINE|L1 -31308 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 137.5-2 chr1 105401667 105402004 + 0.75 NA Intergenic L1M6B|LINE|L1 217100 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 168.75-20 chr19 51838146 51838379 + 0.75 NA intron (NR_163433, intron 9 of 11) intron (NR_163433, intron 9 of 11) 43105 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 196-22 chr2 219753165 219753463 + 0.75 NA Intergenic Intergenic 125684 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 143-22 chr12 117142917 117143294 + 0.75 NA 3' UTR (NM_033624, exon 12 of 12) 3' UTR (NM_033624, exon 12 of 12) 43638 NR_120464 101928244 Hs.742266 NR_120464 TESC-AS1 - TESC antisense RNA 1 (head to head) ncRNA 140.75-59 chr7 33379371 33379633 + 0.75 NA intron (NM_198428, intron 17 of 22) intron (NM_198428, intron 17 of 22) 249938 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 130.5-89 chr7 46711438 46711779 + 0.75 NA Intergenic Intergenic -14486 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 158.75-2 chr1 61530153 61530591 + 0.75 NA Intergenic MIR|SINE|MIR -123870 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 113.5-70 chr21 28137234 28137534 + 0.75 NA non-coding (NR_126010, exon 5 of 5) non-coding (NR_126010, exon 5 of 5) 46981 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 160.25-16 chr13 74696738 74697180 + 0.75 NA Intergenic Intergenic 144116 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 193.5-13 chr11 79367324 79367653 + 0.75 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 34621 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 161.5-15 chr11 17728917 17729151 + 0.75 NA Intergenic L1MB7|LINE|L1 -6914 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 115.25-7 chr1 174627297 174627607 + 0.75 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -73087 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 145.25-34 chr17 70870713 70870998 + 0.75 NA Intergenic Intergenic 331324 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 129.75-11 chr10 60986077 60986309 + 0.75 NA intron (NM_001350902, intron 1 of 11) MIRc|SINE|MIR 14804 NM_001350906 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 125.25-75 chr6 62140652 62140967 + 0.75 NA intron (NR_146874, intron 2 of 13) L2|LINE|L2 145416 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 140.75-22 chr15 85420807 85421095 + 0.75 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 40348 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 214.25-9 chr10 95638223 95638671 + 0.75 NA intron (NM_001323412, intron 2 of 16) MADE1|DNA|TcMar-Mariner 18264 NM_001323417 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 146.5-4 chr1 170073796 170074112 + 0.75 NA intron (NM_014970, intron 1 of 19) intron (NM_014970, intron 1 of 19) 741 NM_014970 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 132.75-31 chr12 117636247 117636574 + 0.75 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -274608 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 131-15 chr11 104358882 104359175 + 0.75 NA Intergenic Intergenic -194881 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 113.25-94 chr4 168497313 168497553 + 0.75 NA intron (NM_001166108, intron 1 of 21) intron (NM_001166108, intron 1 of 21) 381 NM_001166108 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 178.5-38 chr20 23093776 23094125 + 0.75 NA Intergenic Intergenic -7626 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 126-31 chr15 88720774 88721019 + 0.75 NA Intergenic Intergenic 81880 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 120.5-17 chr11 66377512 66377786 + 0.75 NA Intergenic L1MC2|LINE|L1 -5173 NM_001300869 3177 Hs.569017 NM_001532 ENSG00000174669 SLC29A2 DER12|ENT2|HNP36 solute carrier family 29 member 2 protein-coding 151.5-27 chr13 76283192 76283502 + 0.75 NA Intergenic Intergenic -348215 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 131.25-55 chr22 40607645 40607959 + 0.75 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 28917 NM_001282661 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 136-37 chr2 176729221 176729420 + 0.75 NA Intergenic L2c|LINE|L2 91566 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 137.25-14 chr10 115140360 115140707 + 0.75 NA intron (NM_001276282, intron 5 of 7) L3b|LINE|CR1 47168 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 147.75-51 chr3 127881947 127882151 + 0.75 NA Intergenic Intergenic -33183 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 148-36 chr2 134403791 134404007 + 0.75 NA intron (NM_001371457, intron 12 of 16) intron (NM_001371457, intron 12 of 16) 149827 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 129.5-75 chr5 51622223 51622467 + 0.75 NA Intergenic Intergenic 238897 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 227.5-13 chr12 34445058 34445457 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 422761 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 195-14 chr12 107850002 107850320 + 0.75 NA Intergenic LTR19-int|LTR|ERV1 53610 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 147.5-82 chr8 115522046 115522317 + 0.75 NA intron (NM_001282902, intron 4 of 5) LTR37-int|LTR|ERV1 145832 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 120.5-63 chr22 27731812 27732038 + 0.75 NA Intergenic Intergenic 69831 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 197.75-6 chr11 65013598 65014038 + 0.75 NA promoter-TSS (NR_037650) promoter-TSS (NR_037650) -295 NR_037650 100528018 Hs.80132 NR_037650 ENSG00000273003 ARL2-SNX15 - ARL2-SNX15 readthrough (NMD candidate) ncRNA 146.5-32 chr15 93706694 93707075 + 0.75 NA Intergenic L1MC3|LINE|L1 -149676 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 126.75-91 chr7 113772333 113772519 + 0.75 NA Intergenic LTR78B|LTR|ERV1 146583 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 156-2 chr1 40058237 40058551 + 0.75 NA intron (NM_001350484, intron 2 of 13) L2c|LINE|L2 17543 NM_001350481 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 117.25-102 chrX 70488328 70488579 + 0.75 NA intron (NM_020730, intron 4 of 13) intron (NM_020730, intron 4 of 13) -32459 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 198.75-42 chr5 176993300 176993759 + 0.75 NA intron (NM_001199298, intron 1 of 14) L1PA7|LINE|L1 12913 NM_016290 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 161.25-50 chr22 28385313 28385617 + 0.75 NA intron (NM_001145418, intron 2 of 22) L1MC1|LINE|L1 -74404 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 150.25-66 chr6 50638678 50639028 + 0.75 NA Intergenic Intergenic -74691 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 182.75-25 chr21 23410556 23410942 + 0.75 NA Intergenic Intergenic -25914 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 159.25-16 chr13 69968550 69968810 + 0.75 NA intron (NM_001286725, intron 1 of 9) L1MC4|LINE|L1 -138533 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 132-43 chr20 7397008 7397335 + 0.75 NA Intergenic Intergenic 25563 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 158-32 chr2 171293150 171293531 + 0.75 NA Intergenic MIR|SINE|MIR -62047 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 147.25-21 chr17 59651660 59651912 + 0.75 NA intron (NM_001288653, intron 5 of 31) Tigger1|DNA|TcMar-Tigger 31891 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 212-8 chr11 78817266 78817726 + 0.75 NA intron (NM_001098816, intron 12 of 33) intron (NM_001098816, intron 12 of 33) -242632 NM_024678 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 172-19 chr17 5817473 5817702 + 0.75 NA intron (NR_040000, intron 1 of 3) MER5A1|DNA|hAT-Charlie 45353 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 179.75-38 chr3 174447151 174447612 + 0.75 NA Intergenic Intergenic -411953 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 139.25-48 chr2 46066876 46067272 + 0.75 NA intron (NM_005400, intron 10 of 14) MamRep434|DNA|TcMar-Tigger -230333 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 145.25-63 chr5 56994523 56994768 + 0.75 NA Intergenic MIRb|SINE|MIR -42515 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 170.75-40 chr2 71629243 71629651 + 0.75 NA intron (NM_001130987, intron 41 of 55) L1MEd|LINE|L1 162748 NM_001130984 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 134.25-54 chr22 50596443 50596687 + 0.75 NA Intergenic AluJb|SINE|Alu -4228 NM_012324 23542 Hs.558180 NM_012324 ENSG00000008735 MAPK8IP2 IB-2|IB2|JIP2|PRKM8IPL mitogen-activated protein kinase 8 interacting protein 2 protein-coding 114.75-50 chr2 127173926 127174135 + 0.75 NA Intergenic Intergenic 31737 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 129.75-64 chr5 22610269 22610613 + 0.75 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 242903 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 124.25-56 chr20 46987080 46987306 + 0.75 NA intron (NM_172110, intron 1 of 13) MER58B|DNA|hAT-Charlie 92350 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 125-72 chr4 54194809 54195055 + 0.75 NA Intergenic L1MC4|LINE|L1 -34361 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 113.5-51 chr18 11729242 11729411 + 0.75 NA intron (NM_182978, intron 1 of 11) L2c|LINE|L2 -22146 NM_001261443 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 116-19 chr13 87783653 87783932 + 0.75 NA Intergenic Intergenic 26728 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 126.5-66 chr20 45010590 45010856 + 0.75 NA intron (NM_001352385, intron 9 of 11) intron (NM_001352385, intron 9 of 11) 44211 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 183.75-43 chr4 32523529 32523899 + 0.75 NA Intergenic Intergenic 172676 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 143.75-88 chr9 97848115 97848433 + 0.75 NA intron (NR_147055, intron 1 of 10) intron (NR_147055, intron 1 of 10) 4806 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 183-19 chr13 23427024 23427453 + 0.75 NA non-coding (NR_103450, exon 2 of 2) non-coding (NR_103450, exon 2 of 2) 6464 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 137.75-18 chr11 108965725 108965971 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR 300779 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 128.5-28 chr15 86670484 86670655 + 0.75 NA intron (NM_152336, intron 22 of 24) AluSq2|SINE|Alu -262311 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 153.25-62 chrX 62924867 62925275 + 0.75 NA Intergenic THE1A|LTR|ERVL-MaLR 426261 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 115.75-46 chr2 115524415 115524589 + 0.75 NA intron (NM_001321912, intron 5 of 25) MER21C|LTR|ERVL 180687 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 127-57 chr3 3058642 3058813 + 0.75 NA TTS (NM_001206956) TTS (NM_001206956) 2418 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 123 chr1 55085066 55085257 + 0.75 NA intron (NM_015306, intron 56 of 67) intron (NM_015306, intron 56 of 67) 44939 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 139-55 chr6 36585300 36585602 + 0.75 NA Intergenic AluYf1|SINE|Alu -8862 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 124-51 chr4 170183056 170183463 + 0.75 NA Intergenic Intergenic -43332 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 118-7 chr1 221651224 221651505 + 0.75 NA Intergenic AluJb|SINE|Alu 85536 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 164-57 chr7 80107442 80107755 + 0.75 NA Intergenic Intergenic -27233 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 128.5-63 chr3 119880356 119880706 + 0.75 NA intron (NM_002093, intron 7 of 11) intron (NM_002093, intron 7 of 11) 97821 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 117.25-2 chr1 63295475 63295674 + 0.75 NA intron (NR_038252, intron 3 of 11) intron (NR_038252, intron 3 of 11) 21683 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 117-69 chr5 25890287 25890492 + 0.75 NA Intergenic LTR37-int|LTR|ERV1 699436 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 136.25-25 chr14 43861642 43861874 + 0.75 NA Intergenic Intergenic 645525 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 222-19 chr17 77568881 77569351 + 0.75 NA Intergenic AluJb|SINE|Alu 22175 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 188.25-18 chr18 8155199 8155595 + 0.75 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 211637 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 208.5-11 chr11 76629953 76630328 + 0.75 NA Intergenic Intergenic 39798 NM_001370188 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 119.5-25 chr11 113255972 113256228 + 0.75 NA intron (NM_181351, intron 15 of 18) intron (NM_181351, intron 15 of 18) 17801 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 225.5-20 chr16 26427364 26427779 + 0.75 NA Intergenic AluJr|SINE|Alu 402334 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 173-26 chr18 51927043 51927494 + 0.75 NA Intergenic Intergenic -412929 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 149.25-45 chr3 114392279 114392560 + 0.75 NA intron (NM_001348805, intron 7 of 10) L1MA1|LINE|L1 -8777 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 127-97 chr8 126275196 126275458 + 0.75 NA Intergenic Intergenic -50168 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 165.25-26 chr2 75702344 75702635 + 0.75 NA intron (NM_001201335, intron 2 of 2) intron (NM_001201335, intron 2 of 2) 8426 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 116.25-12 chr11 11987318 11987502 + 0.75 NA intron (NM_015881, intron 4 of 7) MIR3|SINE|MIR 21229 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 120.75-76 chr4 180502675 180502936 + 0.75 NA Intergenic Intergenic 656344 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 142-41 chr3 26715799 26716058 + 0.75 NA Intergenic Intergenic 21371 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 133.75-11 chr10 44706747 44706954 + 0.75 NA Intergenic Intergenic -204466 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 152-35 chr2 127056317 127056569 + 0.75 NA intron (NM_139344, intron 11 of 17) intron (NM_139344, intron 11 of 17) 25622 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 139-51 chr3 190253683 190253927 + 0.75 NA Intergenic L1MC5a|LINE|L1 68641 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 141.75-62 chr4 90659189 90659499 + 0.75 NA intron (NM_207491, intron 6 of 7) MIR|SINE|MIR 424313 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 155-44 chr5 30785190 30785464 + 0.75 NA Intergenic Intergenic -408359 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 131.25-65 chr4 52047136 52047464 + 0.75 NA TTS (NR_147189) TTS (NR_147189) 2495 NR_147189 105377652 Hs.298335 NR_147189 ENSG00000251040 LINC02480 - long intergenic non-protein coding RNA 2480 ncRNA 169-17 chr14 46950267 46950698 + 0.75 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -298701 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 160.25-6 chr10 71696228 71696490 + 0.75 NA intron (NM_022124, intron 21 of 67) MIRb|SINE|MIR 23419 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 130.5-71 chr5 62028260 62028543 + 0.75 NA Intergenic L1ME4b|LINE|L1 -277761 NM_001098511 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 159-52 chr5 44346459 44346738 + 0.75 NA intron (NM_004465, intron 1 of 2) L2a|LINE|L2 -42134 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 143.5-44 chr19 36498222 36498590 + 0.75 NA Intergenic AluSz|SINE|Alu 8779 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 115.5-75 chr5 121756654 121756953 + 0.75 NA Intergenic Intergenic -95079 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 185 chr1 43890690 43891024 + 0.75 NA intron (NR_073018, intron 6 of 10) AluJr4|SINE|Alu -42463 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 141.5-54 chr2 49125618 49125906 + 0.75 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 28753 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 169-42 chr4 22417313 22417633 + 0.75 NA intron (NM_145290, intron 12 of 18) MIR|SINE|MIR -77807 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 126.75-7 chr1 176340121 176340459 + 0.75 NA Intergenic Intergenic -122885 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 121.75-95 chr8 142712628 142712842 + 0.75 NA intron (NR_038925, intron 1 of 2) L1MEd|LINE|L1 12624 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 131-78 chr8 63068737 63068992 + 0.75 NA intron (NM_000370, intron 2 of 4) intron (NM_000370, intron 2 of 4) 17189 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 126.75-98 chrX 84472339 84472701 + 0.75 NA intron (NM_001177478, intron 2 of 9) Tigger15a|DNA|TcMar-Tigger 29933 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 156.75-32 chr14 66225498 66225880 + 0.75 NA Intergenic Intergenic -260682 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 178-3 chr1 115031125 115031482 + 0.75 NA intron (NM_000549, intron 1 of 2) intron (NM_000549, intron 1 of 2) 1479 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 119.5-96 chr5 27773153 27773396 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 300982 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 157-53 chr5 45061693 45062005 + 0.75 NA Intergenic L1MC4a|LINE|L1 252902 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 156.75-54 chr2 214505271 214505699 + 0.75 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -4697 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 132.25-34 chr15 98212453 98212673 + 0.75 NA Intergenic Intergenic 118995 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 139.5-13 chr11 70757236 70757498 + 0.75 NA intron (NM_012309, intron 13 of 24) MER68B|LTR|ERVL -95526 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 122-44 chr22 41473113 41473402 + 0.75 NA intron (NM_001098, intron 1 of 17) AluSq2|SINE|Alu 4140 NM_001098 50 Hs.643610 NM_001098 ENSG00000100412 ACO2 ACONM|HEL-S-284|ICRD|OCA8|OPA9 aconitase 2 protein-coding 127.25-15 chr10 123604117 123604364 + 0.75 NA Intergenic Intergenic -62115 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 120-91 chr9 89285371 89285562 + 0.75 NA Intergenic Intergenic -25729 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 143.25-30 chr15 76067326 76067549 + 0.75 NA intron (NM_152335, intron 1 of 10) AluSx|SINE|Alu 7452 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 136-2 chr1 81313207 81313583 + 0.75 NA intron (NM_001366008, intron 1 of 26) intron (NM_001366008, intron 1 of 26) 7000 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 167.5-2 chr1 118978648 118979023 + 0.75 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 9508 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 149-37 chr3 54348289 54348576 + 0.75 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 225880 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 140.5-50 chr2 150774326 150774563 + 0.75 NA Intergenic L1MC1|LINE|L1 145547 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 174-15 chr14 79009903 79010185 + 0.75 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -189938 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 136-63 chr7 77478226 77478517 + 0.75 NA Intergenic AluJo|SINE|Alu -58924 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 159-11 chr11 121795483 121795849 + 0.75 NA Intergenic Intergenic 304178 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 133-47 chr4 30821510 30821791 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 101281 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 112.75-21 chr11 81698613 81698777 + 0.75 NA Intergenic L1M2|LINE|L1 192141 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 119.25-45 chr2 17680434 17680638 + 0.75 NA intron (NM_024624, intron 23 of 26) Tigger1|DNA|TcMar-Tigger 73274 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 130.25-64 chr3 142564352 142564638 + 0.75 NA intron (NM_001354579, intron 3 of 45) MIRb|SINE|MIR 14238 NM_001184 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 149.5-108 chr8 120625926 120626146 + 0.75 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -135217 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 184-49 chr6 150440932 150441332 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger 72120 NM_001164694 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 140.75-33 chr2 159539589 159539958 + 0.75 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -75521 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 220.25-41 chr8 84245279 84245746 + 0.75 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 60846 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 112.75-41 chr17 73990343 73990597 + 0.75 NA Intergenic Intergenic -161933 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 125.25-19 chr12 61759864 61760229 + 0.75 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 432793 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 145.25-12 chr10 66207731 66208033 + 0.75 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 636457 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 150.5-38 chr18 1881827 1882064 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -522316 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 118-27 chr14 71573534 71573919 + 0.75 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) -12572 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 146.75-27 chr3 68447102 68447327 + 0.75 NA intron (NM_001252216, intron 3 of 4) MIR|SINE|MIR -53423 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 159-24 chr15 50633124 50633496 + 0.75 NA intron (NR_149154, intron 8 of 37) intron (NR_149154, intron 8 of 37) 53487 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 125.5-18 chr10 72811331 72811646 + 0.75 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) -82251 NM_152635 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 195.25-15 chr14 47954943 47955438 + 0.75 NA Intergenic L1M5|LINE|L1 -160176 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 138-21 chr15 26102986 26103222 + 0.75 NA Intergenic Intergenic -12709 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 154 chr1 12084507 12084878 + 0.75 NA intron (NM_001243, intron 2 of 14) intron (NM_001243, intron 2 of 14) 21315 NM_001281430 943 Hs.1314 NM_001243 ENSG00000120949 TNFRSF8 CD30|D1S166E|Ki-1 TNF receptor superfamily member 8 protein-coding 204.75-49 chr8 130818728 130819434 + 0.75 NA intron (NM_001115, intron 13 of 17) MIRb|SINE|MIR 221828 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 171.75-45 chr6 8085920 8086330 + 0.75 NA TTS (NR_003703) TTS (NR_003703) 408 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 174.5-62 chr4 30666301 30666587 + 0.75 NA Intergenic LTR32|LTR|ERVL -53925 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 151-35 chr2 61402266 61402467 + 0.75 NA intron (NM_014709, intron 3 of 79) intron (NM_014709, intron 3 of 79) 15011 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 118.25-86 chr6 1087428 1087717 + 0.75 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 13760 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 118.25-18 chr11 94888848 94889092 + 0.75 NA Intergenic L1MA5|LINE|L1 84586 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 143.5-92 chr6 159039524 159039849 + 0.75 NA intron (NM_138810, intron 7 of 7) intron (NM_138810, intron 7 of 7) 2667 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 115.75-86 chr6 158960030 158960324 + 0.75 NA Intergenic MSTC-int|LTR|ERVL-MaLR 40010 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 146.25-50 chr22 33603928 33604252 + 0.75 NA intron (NM_133642, intron 5 of 14) MIRc|SINE|MIR 100830 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 212.25-21 chr18 11289451 11289909 + 0.75 NA Intergenic AluSz|SINE|Alu -140918 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 143.5-20 chr12 12691736 12691978 + 0.75 NA intron (NM_006143, intron 2 of 3) LTR78|LTR|ERV1 4326 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 121-31 chr19 13565539 13565754 + 0.75 NA Intergenic L3|LINE|CR1 -59167 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 115.25-12 chr10 71271237 71271415 + 0.75 NA intron (NM_001244889, intron 1 of 15) intron (NM_001244889, intron 1 of 15) -47927 NR_033413 55315 Hs.438419 NM_018344 ENSG00000198246 SLC29A3 ENT3|HCLAP|HJCD|PHID solute carrier family 29 member 3 protein-coding 135.5-91 chr6 77068577 77068953 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 395257 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 150-50 chr3 110035164 110035439 + 0.75 NA Intergenic L1M3f|LINE|L1 432473 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 120-17 chr10 62108586 62108875 + 0.75 NA Intergenic MamTip2|DNA|hAT-Tip100 59373 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 168.25-46 chr4 53905548 53905920 + 0.75 NA Intergenic Intergenic 81548 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 146.5-20 chr12 38612452 38612740 + 0.75 NA Intergenic Intergenic 292995 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 137.5-125 chr9 30333123 30333470 + 0.75 NA Intergenic MSTC|LTR|ERVL-MaLR 75158 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 134.75-73 chr8 111572832 111573069 + 0.75 NA Intergenic Intergenic 196311 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 192.75-49 chr9 16391430 16391732 + 0.75 NA Intergenic Intergenic -115268 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 135.75-46 chr2 68395610 68395863 + 0.75 NA exon (NM_002664, exon 9 of 9) exon (NM_002664, exon 9 of 9) 30454 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 118.75-41 chr17 69363516 69363726 + 0.75 NA Intergenic Intergenic -36488 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 130-64 chr5 89265852 89266156 + 0.75 NA intron (NR_136219, intron 7 of 9) MIRc|SINE|MIR -361899 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 153.75-4 chr1 65274833 65275161 + 0.75 NA intron (NM_014787, intron 1 of 18) L1MEg|LINE|L1 10248 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 214.25-18 chr2 135166334 135166724 + 0.75 NA intron (NM_012233, intron 23 of 23) AluJr|SINE|Alu 29901 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 140.25-10 chr10 95525677 95525898 + 0.75 NA intron (NM_001290295, intron 1 of 24) L1ME4b|LINE|L1 35584 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 118.75-61 chr20 48433263 48433430 + 0.75 NA Intergenic MER4D1|LTR|ERV1 73435 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 154.25-52 chr4 122704997 122705441 + 0.75 NA Intergenic MLT1H|LTR|ERVL-MaLR 27239 NR_024041 729338 Hs.647968 NR_024041 CETN4P - centrin 4, pseudogene pseudo 173-25 chr16 86631835 86632169 + 0.75 NA Intergenic Intergenic 53493 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 140.75-65 chr8 87488836 87489140 + 0.75 NA Intergenic MER45A|DNA|hAT-Tip100 385027 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 225.25-26 chr4 77406163 77406573 + 0.75 NA Intergenic Intergenic -105385 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 162.5-21 chr12 99364491 99364774 + 0.75 NA intron (NM_152788, intron 12 of 25) FordPrefect|DNA|hAT-Tip100 -209542 NM_001352190 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 144.75-92 chr9 77549347 77549587 + 0.75 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 98855 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 136.75-32 chr14 77628302 77628686 + 0.75 NA Intergenic AluY|SINE|Alu -11727 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 147.75-21 chr14 55948416 55948681 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -151874 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 122-31 chr19 51099619 51099880 + 0.75 NA intron (NM_145232, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 8660 NM_145232 90353 Hs.148425 NM_145232 ENSG00000142544 CTU1 ATPBD3|NCS6 cytosolic thiouridylase subunit 1 protein-coding 135.75-105 chr8 123146241 123146559 + 0.75 NA intron (NM_001363151, intron 19 of 19) L1MB7|LINE|L1 -32647 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 163.75-39 chr22 27252324 27252597 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -27781 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 149.5-73 chr3 178018801 178019051 + 0.75 NA Intergenic AluSg|SINE|Alu 202061 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 126-39 chr18 21482118 21482432 + 0.75 NA intron (NM_001142966, intron 17 of 32) AluSz|SINE|Alu 118429 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 121.25-3 chr1 175653960 175654268 + 0.75 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 89481 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 214.75-40 chr8 135980926 135981420 + 0.75 NA Intergenic Intergenic 523717 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 127.5-64 chr2 117943796 117944088 + 0.75 NA intron (NM_019044, intron 18 of 23) intron (NM_019044, intron 18 of 23) 70128 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 135.75-69 chr4 30575820 30576115 + 0.75 NA Intergenic Intergenic -144402 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 169-25 chr2 52617833 52618201 + 0.75 NA Intergenic L2c|LINE|L2 84598 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 133-11 chr11 72579806 72580125 + 0.75 NA intron (NM_001143839, intron 24 of 29) intron (NM_001143839, intron 24 of 29) 9309 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 125-99 chrX 85954893 85955059 + 0.75 NA intron (NM_001320959, intron 8 of 14) L1MA2|LINE|L1 -51269 NR_029848 494323 NR_029848 ENSG00000199051 MIR361 MIRN361|hsa-mir-361|mir-361 microRNA 361 ncRNA 180.5-74 chr5 146449164 146449456 + 0.75 NA intron (NM_006706, intron 1 of 21) L2b|LINE|L2 1977 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 163-28 chr20 32996965 32997317 + 0.75 NA intron (NM_080675, intron 6 of 12) intron (NM_080675, intron 6 of 12) 7292 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 142.75-40 chr2 64036346 64036602 + 0.75 NA Intergenic Intergenic -17046 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 116.25-68 chr4 114447144 114447480 + 0.75 NA Intergenic Intergenic -151090 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 144.5-104 chr8 86126663 86127011 + 0.75 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 27927 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 164.75-10 chr10 72997786 72998094 + 0.75 NA Intergenic Intergenic -43134 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 122.5-4 chr1 110706981 110707236 + 0.75 NA Intergenic Intergenic -32168 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 181-11 chr10 100098062 100098515 + 0.75 NA Intergenic Intergenic -16419 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 117.5-4 chr1 169474431 169474645 + 0.75 NA intron (NM_001319667, intron 1 of 4) intron (NM_001319667, intron 1 of 4) 11406 NM_006996 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 116.5-118 chr8 29246194 29246429 + 0.75 NA intron (NM_015254, intron 1 of 39) AluSq2|SINE|Alu 16759 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 133.75-12 chr10 71253558 71253861 + 0.75 NA intron (NM_001244889, intron 1 of 15) intron (NM_001244889, intron 1 of 15) -35481 NR_038453 728978 Hs.646725 NR_038453 ENSG00000237512 UNC5B-AS1 - UNC5B antisense RNA 1 ncRNA 222.75-43 chr7 45093754 45094173 + 0.75 NA Intergenic L1MB8|LINE|L1 -4994 NM_001146334 23148 Hs.96633 NM_001146334 ENSG00000136274 NACAD - NAC alpha domain containing protein-coding 114-37 chr15 48472506 48472771 + 0.75 NA exon (NM_000138, exon 35 of 66) exon (NM_000138, exon 35 of 66) 140441 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 113-49 chr2 114659603 114659863 + 0.75 NA intron (NM_001321908, intron 2 of 25) MLT1C|LTR|ERVL-MaLR 173815 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 164.75-27 chr18 1985493 1985838 + 0.75 NA Intergenic Intergenic 585840 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 196.5-27 chr14 45270743 45271124 + 0.75 NA Intergenic LTR40a|LTR|ERVL -17731 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 159.25-19 chr14 74339449 74339661 + 0.75 NA Intergenic AluJo|SINE|Alu -8916 NM_018228 55237 Hs.578167 NM_018228 ENSG00000133980 VRTN C14orf115|vertnin vertebrae development associated protein-coding 116.5-20 chr11 83556825 83557064 + 0.75 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 125481 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 188.5-31 chr2 155365766 155366232 + 0.75 NA Intergenic Intergenic 667304 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 181-35 chr3 68949872 68950253 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -17452 NM_001005527 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 118.5-82 chr4 168453863 168454144 + 0.75 NA intron (NM_001345927, intron 7 of 37) intron (NM_001345927, intron 7 of 37) 26489 NM_001291510 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 169.5-5 chr1 119788257 119788533 + 0.75 NA Intergenic L1M7|LINE|L1 -19463 NM_001166107 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 120.5-78 chr4 108848729 108849072 + 0.75 NA intron (NM_198721, intron 25 of 36) intron (NM_198721, intron 25 of 36) -85847 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 165-26 chr17 35071085 35071505 + 0.75 NA intron (NR_037713, intron 1 of 6) L1MD2|LINE|L1 -7588 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 147.5-36 chr17 61733172 61733577 + 0.75 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 130185 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 212.75-4 chr1 199005630 199006113 + 0.75 NA intron (NR_110525, intron 2 of 2) L2c|LINE|L2 -10262 NR_126351 104266961 Hs.576501 NR_126351 ENSG00000235492 LINC01221 TCONS_00000366 long intergenic non-protein coding RNA 1221 ncRNA 159.5-18 chr12 47200567 47200846 + 0.75 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) 12894 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 123.5-24 chr12 10598679 10599085 + 0.75 NA intron (NR_028045, intron 1 of 6) MER5A|DNA|hAT-Charlie 953 NR_028045 10748 Hs.159297 NM_006611 KLRA1P KLRA1|KLRAP1|LY49L|Ly-49L|Ly49 killer cell lectin like receptor A1, pseudogene pseudo 139.75-8 chr1 156336500 156336850 + 0.75 NA promoter-TSS (NM_144627) promoter-TSS (NM_144627) -639 NM_144627 128229 Hs.534539 NM_144627 ENSG00000163467 TSACC C1orf182|SIP|SSTK-IP TSSK6 activating cochaperone protein-coding 203-43 chr9 99613283 99613595 + 0.75 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 206450 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 158-20 chr15 89168779 89169172 + 0.75 NA intron (NM_007011, intron 9 of 14) AluJb|SINE|Alu 52604 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 180-16 chr11 77150119 77150629 + 0.75 NA intron (NM_001127180, intron 4 of 48) intron (NM_001127180, intron 4 of 48) 22128 NM_001369365 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 125.75-37 chr2 89842803 89843091 + 0.75 NA Intergenic L1MEg2|LINE|L1 -205040 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 164.25-43 chr22 34677052 34677378 + 0.75 NA Intergenic Intergenic 320701 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 119.5-85 chr3 175305848 175306145 + 0.75 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -34900 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 136-8 chr11 27970192 27970373 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -86533 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 150-77 chr8 117444805 117445230 + 0.75 NA Intergenic MIR3|SINE|MIR -75696 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 254-8 chr17 8992278 8992787 + 0.75 NA Intergenic AluSx|SINE|Alu -26820 NM_001251852 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 115.75-103 chr9 106772520 106772790 + 0.75 NA Intergenic Intergenic -90511 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 139.75-48 chr2 202243134 202243490 + 0.75 NA Intergenic AluSx1|SINE|Alu -4715 NM_001371394 158.25-54 chr5 110770321 110770637 + 0.75 NA Intergenic L1MC2|LINE|L1 31472 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 164.25-41 chr22 19410279 19410644 + 0.75 NA intron (NM_003325, intron 2 of 24) Tigger19a|DNA|TcMar-Tigger 21272 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 241.75-17 chr20 31061635 31062210 + 0.75 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -195742 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 113-37 chr17 75466342 75466598 + 0.75 NA intron (NM_014738, intron 1 of 31) L1M5|LINE|L1 9835 NM_001351202 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 169.75-18 chr12 74206285 74206595 + 0.75 NA intron (NR_038300, intron 3 of 6) MLT1F|LTR|ERVL-MaLR 86191 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 196-6 chr10 74545250 74545528 + 0.75 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -16065 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 209.75-3 chr11 81655818 81656201 + 0.75 NA Intergenic L1PA17|LINE|L1 234827 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 185.5-9 chr10 61324264 61324555 + 0.75 NA Intergenic Intergenic -128230 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 173.5-9 chr11 40839007 40839270 + 0.75 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -546008 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 120.5-54 chr20 35663297 35663519 + 0.75 NA intron (NM_001198838, intron 1 of 2) intron (NM_001198838, intron 1 of 2) 1492 NM_152928 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 154.5-79 chr9 128461530 128461817 + 0.75 NA intron (NM_001351587, intron 4 of 19) AluSx1|SINE|Alu 4766 NM_153437 4957 Hs.129055 NM_002540 ENSG00000136811 ODF2 CT134|ODF2/1|ODF2/2|ODF84 outer dense fiber of sperm tails 2 protein-coding 120.5-112 chr9 37308518 37308710 + 0.75 NA intron (NR_110317, intron 4 of 7) intron (NR_110317, intron 4 of 7) -114082 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 114.75-79 chr5 83919966 83920194 + 0.75 NA Intergenic MLT2D|LTR|ERVL -199225 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 194.5-41 chr21 34923108 34923505 + 0.75 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -34607 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 120.25-70 chr8 61377224 61377484 + 0.75 NA intron (NM_173519, intron 3 of 5) L3|LINE|CR1 89384 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 137.25-38 chr17 72514946 72515225 + 0.75 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 77719 NR_137281 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 125-32 chr16 47363315 47363582 + 0.75 NA intron (NM_030790, intron 8 of 17) AluJb|SINE|Alu 97615 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 171.25-29 chr2 213809469 213809836 + 0.75 NA intron (NR_047660, intron 9 of 14) L2a|LINE|L2 51585 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 129.5-18 chr11 110132173 110132442 + 0.75 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 38915 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 162.75-73 chr8 111401388 111401695 + 0.75 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 24902 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 125.5-128 chr9 28033939 28034165 + 0.75 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -460186 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 194.5-34 chr2 144086576 144087069 + 0.75 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 124757 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 164-36 chr22 34601212 34601538 + 0.75 NA Intergenic L1ME2z|LINE|L1 396541 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 119.5-2 chr1 51788605 51788824 + 0.75 NA TTS (NM_001242361) TTS (NM_001242361) 47688 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 213.75-30 chr2 198237947 198238266 + 0.75 NA Intergenic Intergenic 136991 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 115.25-57 chr20 12846256 12846516 + 0.75 NA Intergenic Intergenic 90577 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 127.5-72 chr20 41329234 41329433 + 0.75 NA Intergenic Intergenic -11488 NM_022896 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 212.5-27 chr2 139977757 139978215 + 0.75 NA Intergenic AluJo|SINE|Alu 608699 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 142.25-60 chr5 147575836 147576151 + 0.75 NA intron (NR_038902, intron 1 of 3) AluSx1|SINE|Alu 15999 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 199.75-29 chr4 8375878 8376275 + 0.75 NA intron (NM_003501, intron 14 of 17) L1PA16|LINE|L1 55900 NR_149126 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 169-27 chr2 133264031 133264356 + 0.75 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -2002 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 164.75-16 chr11 87332351 87332707 + 0.75 NA Intergenic L1MEc|LINE|L1 294595 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 150-65 chr6 47003552 47003859 + 0.75 NA intron (NM_153840, intron 13 of 14) MER4D1|LTR|ERV1 38627 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 126.75-2 chr1 64124918 64125122 + 0.75 NA intron (NM_005012, intron 4 of 8) intron (NM_005012, intron 4 of 8) -11229 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 137.25-60 chr4 102188186 102188640 + 0.75 NA Intergenic MLT2F|LTR|ERVL 135899 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 147.25-67 chr8 46005656 46005926 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 611852 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 170.5-12 chr10 39491329 39491708 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 794922 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 244.75-20 chr5 155625132 155625474 + 0.75 NA Intergenic Intergenic 611548 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 197.25-54 chr6 138882322 138882692 + 0.75 NA intron (NM_001077706, intron 15 of 21) intron (NM_001077706, intron 15 of 21) 86396 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 133-38 chr2 40366766 40367006 + 0.75 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 63418 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 149.5-69 chr3 116019908 116020132 + 0.75 NA intron (NM_001318915, intron 2 of 8) (TATTAA)n|Simple_repeat|Simple_repeat -114894 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 122-69 chr7 33194434 33194741 + 0.75 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 65023 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 156.75-29 chr14 45434647 45435019 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -181631 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 139.75-38 chr2 448426 448742 + 0.75 NA Intergenic Intergenic 44071 NR_146437 727944 NR_146436 ENSG00000223985 LINC01874 - long intergenic non-protein coding RNA 1874 ncRNA 156.75-23 chr13 29791830 29792084 + 0.75 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 58660 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 175.75-54 chr9 96556621 96556972 + 0.75 NA intron (NR_147239, intron 4 of 14) intron (NR_147239, intron 4 of 14) 10035 NM_001351569 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 207-11 chr12 41099657 41100155 + 0.75 NA Intergenic Intergenic -88414 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 131.75-47 chr2 171234755 171235069 + 0.75 NA Intergenic Intergenic -3619 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 142.75-70 chr5 118006886 118007361 + 0.75 NA intron (NR_104997, intron 2 of 2) L1MEc|LINE|L1 -275451 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 158-36 chr21 22647606 22647881 + 0.75 NA Intergenic L2|LINE|L2 -431541 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 169.5-64 chr5 91924858 91925123 + 0.75 NA Intergenic AluJb|SINE|Alu -541673 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 200.5-68 chr9 31304646 31304947 + 0.75 NA Intergenic MIRb|SINE|MIR 76694 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 163.75-21 chr14 64726978 64727326 + 0.75 NA intron (NM_001308147, intron 1 of 16) MIRb|SINE|MIR 22728 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 120-8 chr1 117493071 117493354 + 0.75 NA exon (NM_006699, exon 9 of 13) exon (NM_006699, exon 9 of 13) 112558 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 128.5-50 chr20 61134968 61135287 + 0.75 NA Intergenic MIR|SINE|MIR 56063 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 139.25-84 chr8 120716800 120717001 + 0.75 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -44353 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 132-70 chr6 167829714 167829963 + 0.75 NA intron (NM_001291964, intron 1 of 32) intron (NM_001291964, intron 1 of 32) 2203 NM_001291964 4301 Hs.614974 NM_005936 ENSG00000130396 AFDN AF6|MLL-AF6|MLLT4|l-afadin afadin, adherens junction formation factor protein-coding 164.75-67 chr8 119996214 119996651 + 0.75 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 122710 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 142.75-42 chr2 75808849 75809240 + 0.75 NA Intergenic Intergenic -98129 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 113.5-10 chr1 214628629 214628957 + 0.75 NA intron (NM_016343, intron 7 of 19) intron (NM_016343, intron 7 of 19) 25598 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 147.5-75 chr6 160312883 160313291 + 0.75 NA Intergenic L1M3e|LINE|L1 -35291 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 207-3 chr1 189919024 189919349 + 0.75 NA Intergenic L1PB4|LINE|L1 556824 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 115.25-49 chr2 114826336 114826523 + 0.75 NA intron (NM_001321910, intron 2 of 26) MER39|LTR|ERV1 7119 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 170.75-61 chr5 122125327 122125788 + 0.75 NA Intergenic Intergenic -3989 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 179.75-37 chr3 172532505 172532846 + 0.75 NA Intergenic Intergenic -9245 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL TNF superfamily member 10 protein-coding 203-30 chr6 60230159 60230532 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -1343785 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 137.5-17 chr11 13154090 13154372 + 0.75 NA Intergenic MIRb|SINE|MIR -122421 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 124-39 chr3 27832185 27832443 + 0.75 NA non-coding (NR_132438, exon 2 of 2) non-coding (NR_132438, exon 2 of 2) 1822 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 148.75-17 chr15 34757362 34757596 + 0.75 NA intron (NR_120329, intron 1 of 2) MER5B|DNA|hAT-Charlie 2395 NR_120329 101928174 Hs.680670 NR_120329 ENSG00000250007 LOC101928174 - uncharacterized LOC101928174 ncRNA 163.25-28 chr14 68537485 68537799 + 0.75 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 91145 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 123.5-62 chr22 38772431 38772622 + 0.75 NA Intergenic MER41A|LTR|ERV1 -16528 NM_001199579 25777 Hs.517622 NM_015374 ENSG00000100242 SUN2 UNC84B Sad1 and UNC84 domain containing 2 protein-coding 218-16 chr15 92391689 92392115 + 0.75 NA Intergenic L2b|LINE|L2 -1979 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 133.5-121 chr8 130892007 130892302 + 0.75 NA intron (NM_001115, intron 7 of 17) LTR84a|LTR|ERVL 148755 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 199.5-38 chr4 100732006 100732526 + 0.75 NA Intergenic Intergenic -57153 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 231.25-8 chr11 81280808 81281212 + 0.75 NA Intergenic Intergenic -518207 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 132.75-20 chr10 69694823 69695029 + 0.75 NA Intergenic Intergenic 64679 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 133.25-9 chr10 41911589 41911905 + 0.75 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 456298 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 150.25-5 chr1 166482157 166482439 + 0.75 NA intron (NR_146890, intron 1 of 2) intron (NR_146890, intron 1 of 2) 7741 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 181.75-38 chr7 31676208 31676534 + 0.75 NA Intergenic L1M5|LINE|L1 -10646 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 135.75-17 chr10 60185556 60185899 + 0.75 NA intron (NM_001204403, intron 18 of 43) intron (NM_001204403, intron 18 of 43) -44711 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 162-37 chr4 43667021 43667291 + 0.75 NA Intergenic L1PBa|LINE|L1 -174613 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 125-8 chr1 166867763 166867996 + 0.75 NA intron (NM_053053, intron 3 of 7) intron (NM_053053, intron 3 of 7) 8385 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 115.25-31 chr13 59925983 59926335 + 0.75 NA intron (NM_001258369, intron 17 of 26) AluJb|SINE|Alu -86559 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 114.5-5 chr10 9745308 9745567 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -313285 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 118.25-26 chr12 127414530 127414732 + 0.75 NA Intergenic Intergenic -74559 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 115.25-87 chr7 13501479 13501707 + 0.75 NA Intergenic Intergenic 484921 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 134.5-44 chr2 25152990 25153191 + 0.75 NA intron (NM_014971, intron 21 of 22) AluSx1|SINE|Alu 15490 NM_001319204 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 135.5-52 chr2 104950845 104951060 + 0.75 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -78357 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 126-49 chr2 136691370 136691695 + 0.75 NA Intergenic LTR16C|LTR|ERVL -74013 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 133.75-48 chr2 220846922 220847324 + 0.75 NA Intergenic Intergenic 725181 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 136-32 chr2 53039229 53039609 + 0.75 NA Intergenic L1MC3|LINE|L1 -336804 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 228.25-16 chr2 68718468 68718953 + 0.75 NA Intergenic MER21C|LTR|ERVL -16101 NM_001007231 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 113-27 chr14 73064021 73064287 + 0.75 NA intron (NM_021239, intron 1 of 18) L2a|LINE|L2 5620 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 137-57 chr4 168323075 168323460 + 0.75 NA Intergenic LTR53-int|LTR|ERVL -4515 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 117.75-22 chr14 20854785 20854948 + 0.75 NA Intergenic Intergenic -36537 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 119.25-105 chr9 125609913 125610251 + 0.75 NA intron (NM_001006619, intron 4 of 10) intron (NM_001006619, intron 4 of 10) 97126 NM_001006617 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 150.5-39 chr18 5987658 5987955 + 0.75 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -91852 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 153-8 chr14 32770747 32771030 + 0.75 NA intron (NM_004274, intron 11 of 13) L2c|LINE|L2 -167991 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 166.5-81 chr5 40760448 40760771 + 0.75 NA 3' UTR (NM_001355037, exon 9 of 9) 3' UTR (NM_001355037, exon 9 of 9) -4648 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 251.25-29 chr8 37173250 37173761 + 0.75 NA Intergenic L1ME4a|LINE|L1 320408 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 199-18 chr18 60093267 60093637 + 0.75 NA Intergenic MIR|SINE|MIR 193456 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 203.25-24 chr17 66200908 66201322 + 0.75 NA Intergenic Intergenic -8982 NM_001353129 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 128.25-86 chr8 132576612 132576957 + 0.75 NA intron (NR_135913, intron 10 of 10) Tigger4a|DNA|TcMar-Tigger -15305 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 182-4 chr1 89085856 89086184 + 0.75 NA Intergenic Intergenic -20812 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 128.25-87 chr8 139302657 139302971 + 0.75 NA Intergenic L1MEd|LINE|L1 -388773 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 137.25-23 chr12 42574255 42574515 + 0.75 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 15361 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 181.25-10 chr12 38467312 38467638 + 0.75 NA Intergenic MIR3|SINE|MIR 150701 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 117.75-30 chr16 83488473 83488716 + 0.75 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) -19752 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 163.25-22 chr13 22830678 22831122 + 0.75 NA Intergenic AluSx|SINE|Alu 67281 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 141-50 chr22 25918787 25919175 + 0.75 NA intron (NM_001318245, intron 33 of 43) MIR|SINE|MIR 176793 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 171.5-93 chr8 140761047 140761310 + 0.75 NA exon (NM_001316342, exon 16 of 33) exon (NM_001316342, exon 16 of 33) -28525 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 149.25-23 chr13 111422933 111423278 + 0.75 NA Intergenic Intergenic 102463 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 191.5-50 chr5 24721322 24721676 + 0.75 NA Intergenic L1PA7|LINE|L1 -76521 NM_001362460 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 153.75-72 chr6 140842447 140842698 + 0.75 NA Intergenic Intergenic 158758 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 175.5-80 chr8 121726697 121727098 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -85457 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 119-65 chr6 67534023 67534238 + 0.75 NA Intergenic L1PA11|LINE|L1 -521221 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 189.75-8 chr11 114114659 114115039 + 0.75 NA intron (NM_006006, intron 2 of 6) AluJb|SINE|Alu 51638 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 126.5-64 chr20 36067053 36067270 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -16201 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 119.25-92 chr8 5041225 5041540 + 0.75 NA Intergenic Intergenic -46468 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 117-53 chr3 29904283 29904536 + 0.75 NA intron (NM_001003793, intron 10 of 14) L1ME3G|LINE|L1 29747 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 121.75-55 chr22 28951854 28952173 + 0.75 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 34624 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 152.25-11 chr10 114171572 114171850 + 0.75 NA intron (NM_018017, intron 1 of 15) intron (NM_018017, intron 1 of 15) 2468 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 178.5-70 chr6 145767461 145767730 + 0.75 NA intron (NR_038246, intron 1 of 2) L1MEd|LINE|L1 -31572 NR_153398 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 128.75-3 chr1 199039769 199040019 + 0.75 NA intron (NR_126351, intron 1 of 2) intron (NR_126351, intron 1 of 2) -20930 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 117-87 chr8 128062641 128062876 + 0.75 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 13606 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 151.5-59 chr5 8151021 8151462 + 0.75 NA Intergenic Intergenic 282093 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 153.75-37 chr18 2331991 2332323 + 0.75 NA Intergenic Intergenic 239348 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 122.5-70 chr5 63085182 63085482 + 0.75 NA Intergenic MIRc|SINE|MIR 506513 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 166-45 chr4 113649140 113649568 + 0.75 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 112384 NM_001221 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 118-74 chr8 129805296 129805590 + 0.75 NA Intergenic Intergenic -18819 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 165.5-27 chr13 112564947 112565305 + 0.75 NA exon (NM_001286279, exon 3 of 10) exon (NM_001286279, exon 3 of 10) 23027 NM_006322 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 235.25-32 chr9 70899294 70899941 + 0.75 NA intron (NM_001366143, intron 1 of 25) L2c|LINE|L2 -30565 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 115.5-59 chr3 95432637 95432807 + 0.75 NA Intergenic Intergenic 250471 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 137.5-69 chr20 39415399 39415724 + 0.75 NA Intergenic Intergenic -190813 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 123.5-4 chr1 45030597 45030909 + 0.75 NA intron (NM_020883, intron 11 of 13) L1MEc|LINE|L1 18499 NR_036510 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 124.25-2 chr1 25822862 25823028 + 0.75 NA non-coding (NR_024498, exon 1 of 1) non-coding (NR_024498, exon 1 of 1) 661 NR_024498 646471 Hs.727271 NR_024498 LOC646471 - uncharacterized LOC646471 ncRNA 188-26 chr3 172319712 172319978 + 0.75 NA intron (NM_001135095, intron 11 of 25) intron (NM_001135095, intron 11 of 25) 128611 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 147.5-41 chr2 24595717 24595958 + 0.75 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 11360 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 183.25-19 chr17 81576065 81576427 + 0.75 NA intron (NM_001369698, intron 12 of 16) L1M2|LINE|L1 1187 NR_130139 55666 Hs.464333 NM_017921 ENSG00000182446 NPLOC4 NPL4 NPL4 homolog, ubiquitin recognition factor protein-coding 152.5-96 chr7 16476682 16476902 + 0.75 NA Intergenic Intergenic -11054 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 164.25-17 chr12 70853839 70854143 + 0.75 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -65071 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 145.5-10 chr10 19572635 19573014 + 0.75 NA intron (NM_001142308, intron 33 of 39) MLT1C|LTR|ERVL-MaLR 155726 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 191.25-8 chr10 34113783 34114260 + 0.75 NA intron (NM_001184789, intron 22 of 22) AluJr|SINE|Alu -341341 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 112.75-82 chr7 71302738 71302937 + 0.75 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -4837 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 127.25-68 chr4 42355502 42355716 + 0.75 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 35659 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 185.25-14 chr12 103405698 103406138 + 0.75 NA intron (NR_103526, intron 2 of 10) intron (NR_103526, intron 2 of 10) 90050 NM_001278420 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 162.5-25 chr14 23686466 23686821 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 50279 NM_005794 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 124.5-100 chr7 34010914 34011277 + 0.75 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 105556 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 164.25 chr1 7793483 7793883 + 0.75 NA intron (NM_001289864, intron 5 of 21) intron (NM_001289864, intron 5 of 21) 9254 NM_001289862 8863 Hs.162200 NM_016831 ENSG00000049246 PER3 FASPS3|GIG13 period circadian regulator 3 protein-coding 135-56 chr5 12303818 12304147 + 0.75 NA Intergenic L1MA5|LINE|L1 -270875 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 158-34 chr20 1819477 1819934 + 0.75 NA Intergenic L2|LINE|L2 -39959 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 164.5-86 chr7 20745063 20745343 + 0.75 NA intron (NM_178559, intron 16 of 18) intron (NM_178559, intron 16 of 18) 41683 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 116.5-133 chrX 46226834 46227160 + 0.75 NA Intergenic L1ME1|LINE|L1 100677 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 117.75-4 chr1 235874299 235874546 + 0.75 NA intron (NR_102436, intron 1 of 3) L2c|LINE|L2 -7495 NM_000081 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 132.75-82 chr6 11277141 11277419 + 0.75 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -44598 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 138.25-21 chr12 63043868 63044208 + 0.75 NA Intergenic L2a|LINE|L2 108772 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 120.75-73 chr4 47017151 47017501 + 0.75 NA Intergenic Intergenic -14241 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 132.25-90 chr8 120117086 120117346 + 0.75 NA Intergenic HAL1|LINE|L1 -7886 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 148-35 chr2 110974027 110974463 + 0.75 NA intron (NM_001371254, intron 13 of 18) LTR84a|LTR|ERVL 141343 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 173.5-68 chr3 125291224 125291556 + 0.75 NA intron (NM_001348436, intron 5 of 8) intron (NM_001348436, intron 5 of 8) 65890 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 151.5-42 chr2 213748988 213749244 + 0.75 NA intron (NR_047660, intron 9 of 14) AluSc|SINE|Alu -8951 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 144.75-71 chr5 156097466 156097712 + 0.75 NA Intergenic L1MD2|LINE|L1 -229168 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 204-9 chr11 36239269 36239593 + 0.75 NA Intergenic Intergenic 49993 NM_001307932 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 168.5-74 chr8 104383538 104383762 + 0.75 NA intron (NM_001385, intron 8 of 9) AluSz6|SINE|Alu 43824 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 122.25-71 chr4 186790578 186790816 + 0.75 NA Intergenic Intergenic -66841 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 151.75-54 chr3 117475061 117475463 + 0.75 NA Intergenic Intergenic 215663 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 113.5-90 chr4 98167316 98167531 + 0.75 NA Intergenic MER21B|LTR|ERVL -23947 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 141.25-20 chr12 7911474 7911726 + 0.75 NA Intergenic L1MEd|LINE|L1 -20404 NM_001286237 144195 Hs.655169 NM_153449 ENSG00000173262 SLC2A14 GLUT14|SLC2A3P3 solute carrier family 2 member 14 protein-coding 173.75-56 chr8 110758101 110758421 + 0.75 NA Intergenic Intergenic 269172 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 126.5-100 chr6 48201073 48201287 + 0.75 NA Intergenic Intergenic -132491 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 185.75-48 chr5 72143423 72143802 + 0.75 NA intron (NM_005909, intron 2 of 6) Tigger15a|DNA|TcMar-Tigger -25855 NR_039967 100616377 NR_039967 ENSG00000264099 MIR4803 - microRNA 4803 ncRNA 252.25-16 chr3 110021882 110022404 + 0.75 NA Intergenic Intergenic 419315 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 150-43 chr20 43659835 43660066 + 0.75 NA Intergenic AluSx4|SINE|Alu -7069 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 140.5-28 chr14 70316858 70317092 + 0.75 NA Intergenic Intergenic 42708 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 222.75-28 chr3 133800619 133801053 + 0.75 NA intron (NM_021203, intron 1 of 7) L2a|LINE|L2 -4979 NR_163491 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 183.25-10 chr12 70484102 70484522 + 0.75 NA Intergenic Intergenic 118022 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 190.75-5 chr1 200127785 200128292 + 0.75 NA intron (NM_205860, intron 7 of 7) intron (NM_205860, intron 7 of 7) 85213 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 180-52 chr5 30826274 30826654 + 0.75 NA Intergenic L1PA16|LINE|L1 -367222 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 115.75-73 chr5 15700058 15700302 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -85178 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 136.75-62 chr3 88424154 88424411 + 0.75 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 85826 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 144-10 chr10 80903528 80903828 + 0.75 NA Intergenic L1MA3|LINE|L1 253881 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 118.5-45 chr17 8626618 8626963 + 0.75 NA intron (NM_001256012, intron 1 of 42) intron (NM_001256012, intron 1 of 42) 3935 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 187.5-83 chr8 73920177 73920589 + 0.75 NA Intergenic MER65-int|LTR|ERV1 41401 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 208.5-24 chr15 53224537 53224924 + 0.75 NA Intergenic Intergenic 108365 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 132.5-52 chr2 84935635 84935942 + 0.75 NA Intergenic Intergenic 30132 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 140-57 chr6 39763741 39764096 + 0.75 NA Intergenic Intergenic -28458 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 115.25-94 chr9 24511250 24511500 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 34301 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 126.5-116 chr8 94457133 94457458 + 0.75 NA intron (NM_001205262, intron 3 of 3) intron (NM_001205262, intron 3 of 3) 17820 NM_001205262 25788 Hs.30561 NM_006550 ENSG00000197275 RAD54B RDH54 RAD54 homolog B protein-coding 151-10 chr12 39507341 39507779 + 0.75 NA Intergenic Intergenic -64440 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 128.75-89 chr8 131333178 131333476 + 0.75 NA Intergenic L1M4c|LINE|L1 -292418 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 275-19 chr8 139017019 139017658 + 0.75 NA Intergenic Intergenic -103297 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 261.5-11 chr17 14829551 14830161 + 0.75 NA Intergenic MIRc|SINE|MIR -184949 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 162.75-68 chr8 8761844 8762187 + 0.75 NA Intergenic L1ME4a|LINE|L1 60078 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 159-38 chr2 184288612 184288848 + 0.75 NA Intergenic Intergenic -90245 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 159.25-25 chr17 41480233 41480536 + 0.75 NA intron (NM_002280, intron 1 of 7) MIR3|SINE|MIR 756 NM_002280 3886 Hs.73082 NM_002280 ENSG00000197079 KRT35 HA5|Ha-5|K35|KRTHA5|hHa5 keratin 35 protein-coding 119.5-21 chr11 35459093 35459404 + 0.75 NA intron (NM_015430, intron 6 of 11) intron (NM_015430, intron 6 of 11) -39190 NM_001252652 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 133 chr1 10580656 10580871 + 0.75 NA intron (NM_004565, intron 3 of 8) L1MEf|LINE|L1 105813 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 152.5-7 chr10 4323078 4323445 + 0.75 NA Intergenic Intergenic -60985 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 142.75-4 chr1 97017861 97018163 + 0.75 NA Intergenic L1MCa|LINE|L1 -77911 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 155.75-35 chr3 10523033 10523418 + 0.75 NA intron (NM_001353564, intron 2 of 20) MIR|SINE|MIR -17639 NM_001330611 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 128-60 chr7 27424852 27425079 + 0.75 NA Intergenic Intergenic -177736 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 127.5-41 chr16 58894182 58894368 + 0.75 NA Intergenic L1PA16|LINE|L1 -159959 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 122-77 chr9 105030586 105030769 + 0.75 NA Intergenic AluSx1|SINE|Alu -102522 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 132.75-9 chr1 214027402 214027657 + 0.75 NA intron (NM_001270616, intron 4 of 4) intron (NM_001270616, intron 4 of 4) 38996 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 174-19 chr17 17828359 17828769 + 0.75 NA intron (NM_001005291, intron 1 of 19) intron (NM_001005291, intron 1 of 19) -4934 NM_001321096 6720 Hs.592123 NM_004176 ENSG00000072310 SREBF1 SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 132.25-45 chr2 61772644 61772854 + 0.75 NA Intergenic Intergenic 81311 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 164.5-17 chr12 20323974 20324231 + 0.75 NA Intergenic L1ME3D|LINE|L1 -45143 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 197.5-7 chr10 65341766 65342133 + 0.75 NA Intergenic Intergenic -229476 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 248.25-33 chr7 96562079 96562519 + 0.75 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) -58776 NR_163949 120.75-79 chr5 113210264 113210426 + 0.75 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 84593 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 118.25-62 chr3 26376961 26377145 + 0.75 NA Intergenic MIR|SINE|MIR -245753 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 251.25-15 chr2 105552059 105552548 + 0.75 NA Intergenic MER45R|DNA|hAT-Tip100 58256 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 175.25-46 chr5 168710203 168710517 + 0.75 NA intron (NR_130737, intron 3 of 6) intron (NR_130737, intron 3 of 6) 3433 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 145-51 chr4 117730012 117730252 + 0.75 NA Intergenic MER6|DNA|TcMar-Tigger -104269 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 205-44 chr9 28396296 28396790 + 0.75 NA intron (NM_152570, intron 3 of 6) AluY|SINE|Alu 322762 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 116.25-62 chr4 32994153 32994409 + 0.75 NA Intergenic Intergenic 643243 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 221-44 chr7 26781115 26781445 + 0.75 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 76443 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 150-59 chr4 143017367 143017644 + 0.75 NA Intergenic L1MA5|LINE|L1 167356 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 200.75-49 chr9 103349783 103350274 + 0.75 NA Intergenic L1MB8|LINE|L1 -24995 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 132.25-39 chr18 27657824 27658061 + 0.75 NA Intergenic Intergenic -315286 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 162.75-75 chr8 125621473 125621758 + 0.75 NA Intergenic Intergenic 189406 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 156.75-71 chr5 11127431 11127716 + 0.75 NA intron (NM_001288715, intron 11 of 20) MLT1E2-int|LTR|ERVL-MaLR -366339 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 119.75-44 chr2 58935511 58935808 + 0.75 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -282049 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 174.25-61 chr8 129926015 129926337 + 0.75 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 13635 NM_001353301 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 199.25-25 chr20 50792438 50792832 + 0.75 NA Intergenic AluSz|SINE|Alu -2259 NM_017843 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 121.25-85 chr8 132436852 132437110 + 0.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 10281 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 123.75-100 chr7 124933018 124933226 + 0.75 NA intron (NR_125719, intron 1 of 7) AluSx3|SINE|Alu -3139 NR_003103 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 174-36 chr22 34694187 34694595 + 0.75 NA Intergenic MIR|SINE|MIR 303525 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 113-20 chr12 41436054 41436318 + 0.75 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -1553 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 172.25-73 chr7 108098984 108099330 + 0.75 NA intron (NM_001318048, intron 10 of 17) intron (NM_001318048, intron 10 of 17) 31204 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 139.25-10 chr10 64856974 64857333 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie 31625 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 126.5-36 chr14 69724570 69724886 + 0.75 NA Intergenic Intergenic -42414 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 210.75-10 chr14 49307244 49307714 + 0.75 NA Intergenic L1M5|LINE|L1 278901 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 138.75-44 chr3 2992576 2992891 + 0.75 NA intron (NM_175607, intron 14 of 24) intron (NM_175607, intron 14 of 24) 68412 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 140-3 chr1 241908037 241908265 + 0.75 NA Intergenic Intergenic -49616 NM_001290693 441925 Hs.731347 NM_001290693 ENSG00000196289 BECN2 BECN1L1|BECN1P1 beclin 2 protein-coding 162.75-22 chr16 22684346 22684765 + 0.75 NA Intergenic Intergenic -129607 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 127.5-8 chr1 167686418 167686775 + 0.75 NA intron (NM_052862, intron 3 of 6) intron (NM_052862, intron 3 of 6) -35386 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 219.75-47 chr9 37472646 37473006 + 0.75 NA Intergenic AluSx3|SINE|Alu -7376 NM_014872 9925 Hs.161276 NM_014872 ENSG00000168795 ZBTB5 - zinc finger and BTB domain containing 5 protein-coding 138-31 chr18 11854627 11854882 + 0.75 NA TTS (NM_020412) TTS (NM_020412) -2999 NM_001261444 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 157.5-96 chr9 97661991 97662385 + 0.75 NA intron (NM_001351507, intron 16 of 21) intron (NM_001351507, intron 16 of 21) 28367 NM_002486 4686 Hs.595669 NM_002486 ENSG00000136937 NCBP1 CBP80|NCBP|Sto1 nuclear cap binding protein subunit 1 protein-coding 204.75-22 chr19 46947767 46948293 + 0.75 NA intron (NM_004491, intron 3 of 6) MER21A|LTR|ERVL -71807 NM_002517 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 126-92 chr9 76793982 76794206 + 0.75 NA intron (NM_001308048, intron 6 of 17) MIRb|SINE|MIR 29658 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 252.25-25 chr9 35690381 35691093 + 0.75 NA promoter-TSS (NM_001301226) promoter-TSS (NM_001301226) -681 NM_003289 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB tropomyosin 2 protein-coding 124-20 chr15 60160672 60161058 + 0.75 NA Intergenic AluJb|SINE|Alu 156554 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 168.25-28 chr18 72895957 72896237 + 0.75 NA Intergenic Intergenic 27057 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 218.75-38 chr8 53655368 53655795 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -131616 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 155.5-7 chr1 95712943 95713251 + 0.75 NA Intergenic LTR89|LTR|ERVL? 202981 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 197.75-52 chr9 16981127 16981525 + 0.75 NA Intergenic L2a|LINE|L2 -110656 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 148.5-44 chr2 23910858 23911099 + 0.75 NA intron (NR_125717, intron 1 of 28) AluSp|SINE|Alu 16145 NM_001354107 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 162-42 chr4 180322686 180323028 + 0.75 NA Intergenic Intergenic 836292 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 138.5-35 chr14 52244519 52244888 + 0.75 NA Intergenic L2|LINE|L2 -22995 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 135.75-38 chr17 33427373 33427616 + 0.75 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 106266 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 132.5-53 chr2 174790768 174791004 + 0.75 NA Intergenic Intergenic -26414 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 195.5-78 chr6 150657026 150657461 + 0.75 NA intron (NM_001029884, intron 2 of 16) intron (NM_001029884, intron 2 of 16) 24279 NR_138140 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 129-26 chr16 54835789 54836028 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy 12325 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 144.5-37 chr14 35027342 35027650 + 0.75 NA intron (NM_003136, intron 14 of 15) AluSg4|SINE|Alu -17411 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 137.75-33 chr16 76343886 76344117 + 0.75 NA intron (NM_001322191, intron 2 of 22) intron (NM_001322191, intron 2 of 22) 34149 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 208.25-18 chr20 45243134 45243628 + 0.75 NA Intergenic L1MB7|LINE|L1 11183 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 131.5-22 chr12 72066057 72066309 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 127338 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 114.75-34 chr14 74149650 74149997 + 0.75 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 64870 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 181-21 chr12 59679946 59680426 + 0.75 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -9184 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 210-25 chr4 88461724 88462159 + 0.75 NA intron (NM_016323, intron 3 of 22) intron (NM_016323, intron 3 of 22) 4822 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 185.75-45 chr4 38642019 38642397 + 0.75 NA intron (NR_026804, intron 1 of 7) L1MEc|LINE|L1 -21991 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 174-14 chr14 52708789 52709324 + 0.75 NA intron (NR_158967, intron 4 of 14) intron (NR_158967, intron 4 of 14) 1856 NR_158967 5706 Hs.156171 NM_002806 ENSG00000100519 PSMC6 SUG2|p42 proteasome 26S subunit, ATPase 6 protein-coding 190 chr1 204014059 204014417 + 0.75 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 27026 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 135-75 chr8 92485243 92485506 + 0.75 NA Intergenic Intergenic 170120 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 138.5-63 chr2 206211306 206211675 + 0.75 NA intron (NR_104359, intron 1 of 5).2 AluSx4|SINE|Alu 2138 NM_001261454 2825 Hs.184907 NM_005279 ENSG00000183671 GPR1 - G protein-coupled receptor 1 protein-coding 143.75-24 chr11 84172309 84172550 + 0.75 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 100851 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 219.25-4 chr10 11117089 11117450 + 0.75 NA intron (NM_001326345, intron 1 of 13) MIRc|SINE|MIR -11781 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 251-3 chr1 225241896 225242254 + 0.75 NA intron (NM_001367479, intron 43 of 85) AluJr|SINE|Alu 185963 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 179.5-84 chr7 8939623 8939923 + 0.75 NA Intergenic L2a|LINE|L2 506164 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 115.25-5 chr1 80064584 80064912 + 0.75 NA Intergenic MIR|SINE|MIR -471007 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 127.25-14 chr10 84411123 84411333 + 0.75 NA intron (NM_018999, intron 3 of 10) L1PA11|LINE|L1 -13711 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 113.75-28 chr12 41989938 41990140 + 0.75 NA Intergenic Intergenic 154835 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 227.25-35 chr7 38731203 38731616 + 0.75 NA intron (NM_014396, intron 25 of 28) intron (NM_014396, intron 25 of 28) -44320 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 150-71 chr8 55702985 55703402 + 0.75 NA Intergenic L1MEd|LINE|L1 70185 NM_001286661 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 139-10 chr11 84433301 84433559 + 0.75 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -116091 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 139.75-27 chr14 54109655 54109971 + 0.75 NA Intergenic AluJb|SINE|Alu -152922 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 191.5-51 chr5 26026550 26026918 + 0.75 NA Intergenic Intergenic 835781 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 222.5-45 chr6 130338232 130338691 + 0.75 NA intron (NM_001258275, intron 1 of 13) THE1D-int|LTR|ERVL-MaLR 27407 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 164.5-2 chr1 147438712 147438980 + 0.75 NA intron (NR_038423, intron 3 of 3) L1MCc|LINE|L1 79029 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 154-11 chr11 63100590 63100855 + 0.75 NA intron (NM_001136506, intron 5 of 9) L1MA3|LINE|L1 43499 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 151-49 chr4 84273122 84273387 + 0.75 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 25915 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 143.5-46 chr2 13756608 13756842 + 0.75 NA Intergenic L2a|LINE|L2 644233 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 126.25-89 chr8 102249902 102250224 + 0.75 NA intron (NR_125415, intron 2 of 2) intron (NR_125415, intron 2 of 2) 10612 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 121.75-8 chr10 72430173 72430378 + 0.75 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -75356 NM_001002762 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 184.25-25 chr2 223145225 223145568 + 0.75 NA Intergenic Intergenic 93466 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 152.5-86 chr5 6450848 6451174 + 0.75 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 2152 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 202.5-14 chr17 63161666 63162084 + 0.75 NA intron (NM_025185, intron 4 of 25) L2a|LINE|L2 195640 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 155.75-27 chr2 190824373 190824629 + 0.75 NA Intergenic AluSq2|SINE|Alu -56320 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 132.25-72 chr5 35314766 35315040 + 0.75 NA Intergenic Intergenic -84416 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 154.25-43 chr21 30101366 30101641 + 0.75 NA Intergenic Intergenic 65302 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 150.75-42 chr20 63037646 63038116 + 0.75 NA promoter-TSS (NR_028295) promoter-TSS (NR_028295) -130 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 142.25-38 chr2 217329151 217329378 + 0.75 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 46531 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 131-59 chr6 41792489 41792860 + 0.75 NA 3' UTR (NM_001286554, exon 6 of 6) 3' UTR (NM_001286554, exon 6 of 6) 5231 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 130.5-83 chr6 158342370 158342733 + 0.75 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 19569 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 130.5-58 chr22 46868177 46868369 + 0.75 NA intron (NM_001284305, intron 4 of 12) Tigger4|DNA|TcMar-Tigger 47769 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 185.25-26 chr2 50503338 50503822 + 0.75 NA intron (NM_001330093, intron 13 of 22) L1MC4|LINE|L1 -155824 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 113.5-108 chr6 151025597 151025873 + 0.75 NA intron (NM_001350486, intron 24 of 27) MamRep137|DNA|TcMar-Tigger 18727 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 114-70 chr5 101576478 101576776 + 0.75 NA Intergenic Intergenic -673345 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 115.25-8 chr1 194472765 194473006 + 0.75 NA Intergenic Intergenic 1168140 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 120.25-7 chr10 28341024 28341384 + 0.75 NA Intergenic L1MC|LINE|L1 -38140 NR_134517 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 129-30 chr17 62055161 62055426 + 0.75 NA intron (NM_005121, intron 2 of 29) AluSz6|SINE|Alu 9985 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 133.5-119 chr8 125728900 125729179 + 0.75 NA Intergenic Intergenic 222158 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 122-49 chr3 94678357 94678529 + 0.75 NA Intergenic L1PA10|LINE|L1 -259820 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 206-14 chr2 28258180 28258546 + 0.75 NA intron (NM_199193, intron 11 of 13) L1ME1|LINE|L1 -51402 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 148.75-75 chr9 93535842 93536266 + 0.75 NA intron (NM_001286722, intron 10 of 17) intron (NM_001286722, intron 10 of 17) -40530 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 187.75-34 chr3 96072095 96072445 + 0.75 NA Intergenic Intergenic -287694 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 229-32 chr7 26693831 26694442 + 0.75 NA intron (NM_003930, intron 9 of 12) (AT)n|Simple_repeat|Simple_repeat 56265 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 119-23 chr14 28244548 28244841 + 0.75 NA Intergenic L2a|LINE|L2 520625 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 162.5-55 chr3 67243935 67244300 + 0.75 NA Intergenic Intergenic 18653 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 120.25-35 chr2 79923040 79923237 + 0.75 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -56555 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 169.25-9 chr11 34676820 34677103 + 0.75 NA Intergenic L2a|LINE|L2 44395 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 141.75-84 chr8 121329376 121329630 + 0.75 NA Intergenic L2a|LINE|L2 -309843 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 122-22 chr14 46526963 46527209 + 0.75 NA Intergenic Intergenic 55727 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 122-66 chr6 38347455 38347658 + 0.75 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -134040 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 124.75-4 chr1 46261927 46262241 + 0.75 NA intron (NM_001142548, intron 9 of 18) AluJb|SINE|Alu 14321 NM_003579 8438 Hs.642042 NM_003579 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54 like protein-coding 136.25-26 chr14 63378526 63378818 + 0.75 NA intron (NM_001282180, intron 13 of 13) intron (NM_001282180, intron 13 of 13) -59737 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 119-39 chr2 98303768 98303974 + 0.75 NA intron (NM_001345864, intron 20 of 21) intron (NM_001345864, intron 20 of 21) -42284 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 182.25-46 chr5 124529324 124529742 + 0.75 NA Intergenic Intergenic -91013 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 117-57 chr3 196960524 196960777 + 0.75 NA intron (NM_025163, intron 1 of 2) AluSx|SINE|Alu 8183 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 134.25-77 chr6 51801396 51801729 + 0.75 NA intron (NM_138694, intron 52 of 66) intron (NM_138694, intron 52 of 66) 179692 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 217.5-31 chr3 196345643 196346012 + 0.75 NA Intergenic L2b|LINE|L2 -7407 NR_037950 100534611 Hs.733180 NR_037950 TM4SF19-TCTEX1D2 - TM4SF19-TCTEX1D2 readthrough (NMD candidate) ncRNA 230.25-9 chr17 68932325 68932946 + 0.75 NA intron (NM_001288985, intron 6 of 39) MIR1_Amn|SINE|MIR 22757 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 213.75-45 chr7 28967483 28967862 + 0.75 NA Intergenic Intergenic -9342 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 148.25-43 chr20 16209658 16209902 + 0.75 NA Intergenic Intergenic -223898 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 212.25-29 chr3 67817453 67817980 + 0.75 NA intron (NR_109992, intron 3 of 6) L1MCa|LINE|L1 163019 NR_109993 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 161-53 chr5 85508269 85508544 + 0.75 NA Intergenic Intergenic -774038 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 181.5-44 chr3 100768543 100769002 + 0.75 NA intron (NM_001349332, intron 30 of 35) MIRc|SINE|MIR 59230 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 139.25-4 chr1 111775943 111776227 + 0.75 NA exon (NM_004980, exon 8 of 8) exon (NM_004980, exon 8 of 8) 20184 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 161-32 chr17 82482559 82482937 + 0.75 NA intron (NM_001038618, intron 7 of 10) FLAM_C|SINE|Alu 24007 NM_001083608 26502 Hs.256526 NM_012336 ENSG00000141562 NARF IOP2 nuclear prelamin A recognition factor protein-coding 122.75-13 chr10 116697883 116698263 + 0.75 NA intron (NM_001330164, intron 6 of 12) L1MB7|LINE|L1 -27791 NM_001330142 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 114.75-92 chr7 3221695 3221889 + 0.75 NA Intergenic L1M5|LINE|L1 -63219 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 137-53 chr4 31931628 31931991 + 0.75 NA Intergenic MER89|LTR|ERV1 -65570 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 137-50 chr3 185469848 185470172 + 0.75 NA intron (NM_004721, intron 10 of 13) intron (NM_004721, intron 10 of 13) 29025 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 147.25-62 chr7 6221981 6222265 + 0.75 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) -49986 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 156.75-77 chr5 78227043 78227315 + 0.75 NA intron (NM_003664, intron 5 of 26) intron (NM_003664, intron 5 of 26) 67519 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 148.75-42 chr3 11789139 11789436 + 0.75 NA Intergenic Intergenic 57598 NR_158714 132001 Hs.475472 NM_138807 ENSG00000144559 TAMM41 C3orf31|RAM41|TAM41 TAM41 mitochondrial translocator assembly and maintenance homolog protein-coding 148.75-32 chr2 38862003 38862315 + 0.75 NA exon (NM_198963, exon 4 of 24) exon (NM_198963, exon 4 of 24) 13775 NM_001329963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 115.5-40 chr18 14103917 14104162 + 0.75 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 28396 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 137.75-14 chr11 78104031 78104376 + 0.75 NA intron (NM_001007027, intron 11 of 13) intron (NM_001007027, intron 11 of 13) -24341 NM_001203260 100532726 Hs.407860 NM_001203260 ENSG00000259112 NDUFC2-KCTD14 - NDUFC2-KCTD14 readthrough protein-coding 118.5-9 chr1 108753414 108753752 + 0.75 NA intron (NM_007269, intron 3 of 18) intron (NM_007269, intron 3 of 18) 6909 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 116-63 chr6 104670148 104670302 + 0.75 NA Intergenic Intergenic 189321 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 171.75-35 chr3 19295516 19295836 + 0.75 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 19255 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 169.25-37 chr3 119949216 119949535 + 0.75 NA intron (NM_002093, intron 2 of 11) L2a|LINE|L2 135273 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 195.25-9 chr10 106702205 106702706 + 0.75 NA intron (NM_001206569, intron 8 of 25) intron (NM_001206569, intron 8 of 25) 462251 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 134.25-70 chr5 83237128 83237487 + 0.75 NA intron (NM_001318012, intron 6 of 7) L1MA4|LINE|L1 159760 NM_001318013 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 172-4 chr10 33034170 33034559 + 0.75 NA Intergenic Intergenic -76134 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 190.75-35 chr21 20089825 20090313 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 168616 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 114-29 chr13 30969369 30969718 + 0.75 NA intron (NM_152325, intron 6 of 6) intron (NM_152325, intron 6 of 6) 36887 NM_001353388 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 236-7 chr11 77879222 77879554 + 0.75 NA intron (NM_033547, intron 22 of 22) intron (NM_033547, intron 22 of 22) 38250 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 252.75-29 chr6 147479730 147480241 + 0.75 NA Intergenic L1ME1|LINE|L1 -28705 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 156.25-11 chr11 79892010 79892293 + 0.75 NA Intergenic Intergenic -451121 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 116.5-91 chr5 55939989 55940236 + 0.75 NA non-coding (NR_120480, exon 18 of 18) non-coding (NR_120480, exon 18 of 18) 54851 NM_001364276 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 139-50 chr3 178237276 178237578 + 0.75 NA Intergenic LTR40A1|LTR|ERVL -181774 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 212.75-31 chr6 91107643 91108150 + 0.75 NA Intergenic Intergenic -413764 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 154-52 chr4 177742896 177743177 + 0.75 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 14279 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 115.75 chr1 41072089 41072297 + 0.75 NA intron (NM_001172218, intron 10 of 15) intron (NM_001172218, intron 10 of 15) -50438 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 126.75-79 chr5 128457694 128457900 + 0.75 NA intron (NM_001999, intron 6 of 64) L1PA8A|LINE|L1 80448 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 125.5-88 chr4 21816804 21817099 + 0.75 NA intron (NM_147182, intron 1 of 8) MIR|SINE|MIR 36237 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 121.5-67 chr2 188702610 188702919 + 0.75 NA Intergenic Intergenic 87359 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 138.25-83 chr8 78624191 78624453 + 0.75 NA Intergenic L1MC5|LINE|L1 -41767 NM_016010 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 231.5-39 chr6 11357548 11357991 + 0.75 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 24579 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 157.25-24 chr12 125839893 125840153 + 0.75 NA Intergenic Intergenic 143351 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 139.5-39 chr2 12608641 12609029 + 0.75 NA Intergenic L1ME1|LINE|L1 -108037 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 117.75-39 chr2 151076880 151077164 + 0.75 NA Intergenic L1MA8|LINE|L1 184841 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 161.5-18 chr11 55093278 55093540 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -168746 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 164.5-83 chr6 102937836 102938269 + 0.75 NA Intergenic L1MCa|LINE|L1 1539067 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 123.25-62 chr5 27604519 27604722 + 0.75 NA Intergenic Intergenic 132328 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 120.75-61 chr22 26420966 26421198 + 0.75 NA Intergenic AluJo|SINE|Alu -8178 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 147.75-40 chr2 199215643 199215954 + 0.75 NA Intergenic Intergenic 242141 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 128.5-74 chr5 56558822 56559058 + 0.75 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 47316 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 151.25-49 chr5 139982038 139982301 + 0.75 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 61130 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 213.25-12 chr12 111031223 111031572 + 0.75 NA Intergenic L1MC4|LINE|L1 -2768 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 125.25-35 chr19 2439509 2439751 + 0.75 NA intron (NM_032737, intron 2 of 11) intron (NM_032737, intron 2 of 11) -4630 NR_106958 102466806 NR_106958 ENSG00000283728 MIR7108 hsa-mir-7108 microRNA 7108 ncRNA 126.25-80 chr6 145307308 145307576 + 0.75 NA Intergenic MER34C2|LTR|ERV1 379435 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 222.5-41 chr5 66193565 66194176 + 0.75 NA Intergenic L1M1|LINE|L1 15576 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 118-73 chr8 126707160 126707412 + 0.75 NA Intergenic Arthur1|DNA|hAT-Tip100 -148808 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 200.5-63 chr8 64341899 64342374 + 0.75 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 26422 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 143.5-104 chr8 122612605 122612849 + 0.75 NA Intergenic Intergenic -44083 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 121.25-45 chr3 98940690 98941096 + 0.75 NA Intergenic L1MB2|LINE|L1 -39198 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 127.5-22 chr11 19720884 19721132 + 0.75 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -6336 NR_015384 100126784 Hs.64341 NR_015384 LOC100126784 - uncharacterized LOC100126784 ncRNA 135.5-109 chr8 133309672 133310023 + 0.75 NA Intergenic AluYk2|SINE|Alu -12543 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 133-63 chr8 13346994 13347255 + 0.75 NA intron (NM_024767, intron 4 of 4) MER44A|DNA|TcMar-Tigger -70340 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 150.5-46 chr2 101260375 101260695 + 0.75 NA intron (NM_017546, intron 2 of 6) intron (NM_017546, intron 2 of 6) 7649 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 128.75-33 chr18 37511597 37511816 + 0.75 NA intron (NM_001353724, intron 1 of 12) intron (NM_001353724, intron 1 of 12) -25914 NM_001353761 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 142.5-65 chr4 93912809 93913058 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 84180 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 205.5-28 chr2 134839553 134839998 + 0.75 NA intron (NM_138326, intron 1 of 9) intron (NM_138326, intron 1 of 9) 1159 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 238-9 chr12 20692179 20692499 + 0.75 NA Intergenic L1MC5a|LINE|L1 -3016 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 198.25-22 chr2 61817034 61817444 + 0.75 NA Intergenic Charlie7|DNA|hAT-Charlie 36821 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 127-58 chr3 17272652 17272888 + 0.75 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 339574 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 117-83 chr8 68537082 68537263 + 0.75 NA 3' UTR (NM_001195639, exon 7 of 7) 3' UTR (NM_001195639, exon 7 of 7) -205681 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 197.75-26 chr3 26677070 26677564 + 0.75 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -17240 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 140-13 chr12 86182638 86182928 + 0.75 NA intron (NM_001351286, intron 4 of 7) LTR86C|LTR|ERVL 73608 NM_001351291 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 156.25-35 chr2 56170760 56171114 + 0.75 NA Intergenic Intergenic -13053 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 119.25-14 chr11 62256982 62257240 + 0.75 NA Intergenic Intergenic -13047 NM_002411 4250 Hs.46452 NM_002411 ENSG00000110484 SCGB2A2 MGB1|UGB2 secretoglobin family 2A member 2 protein-coding 155.5-54 chr2 41983113 41983361 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -29431 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 130-24 chr15 91065113 91065338 + 0.75 NA Intergenic MADE1|DNA|TcMar-Mariner -34363 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 115-73 chr8 36276219 36276402 + 0.75 NA Intergenic AluJb|SINE|Alu -508064 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 117.25-38 chr2 226652 226918 + 0.75 NA intron (NM_015677, intron 8 of 9) intron (NM_015677, intron 8 of 9) 29555 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 151.5-55 chr3 187837091 187837496 + 0.75 NA Intergenic Intergenic -91825 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 165.5-70 chr5 82102877 82103184 + 0.75 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 131007 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 183.25-39 chr4 153036201 153036500 + 0.75 NA Intergenic L2c|LINE|L2 93367 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 114-63 chr4 37367019 37367342 + 0.75 NA intron (NM_001144990, intron 3 of 6) L1MEg2|LINE|L1 -86745 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 163.5-3 chr1 62801214 62801533 + 0.75 NA intron (NM_032852, intron 1 of 10) intron (NM_032852, intron 1 of 10) 17241 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 145.25-9 chr1 214587206 214587422 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -15881 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 168-41 chr2 117908643 117909080 + 0.75 NA Intergenic Intergenic 75130 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 190-7 chr11 25477491 25477898 + 0.75 NA Intergenic Intergenic -711429 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 160-7 chr11 85772009 85772249 + 0.75 NA intron (NM_001365826, intron 1 of 18) AluJb|SINE|Alu -14060 NM_001162953 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 143-7 chr10 89517354 89517739 + 0.75 NA intron (NM_213606, intron 2 of 7) AluJr4|SINE|Alu 18048 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 193.5-40 chr3 42710676 42711077 + 0.75 NA intron (NM_144719, intron 14 of 15) intron (NM_144719, intron 14 of 15) -8078 NM_020707 57467 Hs.476041 NM_020707 ENSG00000010282 HHATL C3orf3|GUP1|MBOAT3|MSTP002|OACT3 hedgehog acyltransferase like protein-coding 116.25 chr1 32063934 32064135 + 0.75 NA Intergenic Intergenic -7997 NM_001319677 55116 Hs.25544 NM_018056 ENSG00000121775 TMEM39B - transmembrane protein 39B protein-coding 163.5-59 chr3 158911620 158911956 + 0.75 NA Intergenic LTR18C|LTR|ERVL 109734 NM_001167903 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 125.75-23 chr15 58836402 58836642 + 0.75 NA intron (NM_001040450, intron 6 of 8) intron (NM_001040450, intron 6 of 8) 65220 NM_001040453 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 150-48 chr22 33273401 33273752 + 0.75 NA 3' UTR (NM_004737, exon 16 of 16) 3' UTR (NM_004737, exon 16 of 16) 163093 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 194-22 chr20 23219560 23220028 + 0.75 NA Intergenic L1PB1|LINE|L1 -87158 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 200.5-26 chr18 2173199 2173481 + 0.75 NA Intergenic Intergenic 398165 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 155.5-12 chr1 163104624 163104959 + 0.75 NA Intergenic L2c|LINE|L2 32886 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 138.75-16 chr14 49254496 49254913 + 0.75 NA Intergenic L1PA15|LINE|L1 331676 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 128.5-76 chr5 80119747 80120005 + 0.75 NA intron (NR_126061, intron 11 of 13) MER5A|DNA|hAT-Charlie -36211 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 291-4 chr10 61732828 61733345 + 0.75 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 70125 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 217.75-35 chr6 157559859 157560443 + 0.75 NA intron (NM_024630, intron 2 of 8) intron (NM_024630, intron 2 of 8) 31019 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 164.5-76 chr5 173211271 173211570 + 0.75 NA Intergenic Intergenic 23786 NM_001166176 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 195-11 chr11 107778736 107779211 + 0.75 NA Intergenic Intergenic -66917 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 211-36 chr8 79923082 79923600 + 0.75 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) -51604 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 113.25-11 chr10 7126358 7126544 + 0.75 NA Intergenic Charlie7|DNA|hAT-Charlie 60333 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 120-86 chr8 34768727 34769073 + 0.75 NA Intergenic GA-rich|Low_complexity|Low_complexity -15021 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 205 chr1 50739655 50739995 + 0.75 NA intron (NM_007051, intron 5 of 18) intron (NM_007051, intron 5 of 18) 220442 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 127.25-36 chr16 8292453 8292715 + 0.75 NA Intergenic L1MA8|LINE|L1 297254 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 131.5-50 chr20 10535570 10535917 + 0.75 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 100438 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 129.75-49 chr21 30680430 30680719 + 0.75 NA Intergenic Intergenic 37710 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 159.25-44 chr22 31231228 31231528 + 0.75 NA intron (NM_005569, intron 2 of 15) intron (NM_005569, intron 2 of 15) -17006 NM_016733 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 217.25-36 chr8 130239875 130240348 + 0.75 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 56422 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 149.75-17 chr14 73982917 73983322 + 0.75 NA exon (NM_001321985, exon 7 of 17) exon (NM_001321985, exon 7 of 17) 32817 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 205-12 chr13 63219587 63219950 + 0.75 NA intron (NR_126409, intron 5 of 6) L1ME4b|LINE|L1 108326 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 201-52 chr8 142561669 142562014 + 0.75 NA Intergenic L1MEf|LINE|L1 52638 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 115.25-13 chr10 98882363 98882607 + 0.75 NA intron (NM_021828, intron 3 of 11) MLT1I|LTR|ERVL-MaLR 42083 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 198.75-18 chr19 29281656 29282100 + 0.75 NA Intergenic Intergenic -68727 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 114.5-90 chr6 77493882 77494047 + 0.75 NA Intergenic Intergenic -29942 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 147-60 chr4 62249059 62249394 + 0.75 NA Intergenic Intergenic -87461 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 117.75-33 chr18 40354951 40355221 + 0.75 NA Intergenic AluSg7|SINE|Alu 288800 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 155.5-75 chr4 24274529 24275028 + 0.75 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 198127 NM_001330751 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 162.75-17 chr13 104823702 104824086 + 0.75 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -641973 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 133.5-120 chr8 130080172 130080410 + 0.75 NA intron (NM_001362925, intron 25 of 29) intron (NM_001362925, intron 25 of 29) 4477 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 135.25-57 chr22 27787745 27788112 + 0.75 NA intron (NM_002430, intron 1 of 1) intron (NM_002430, intron 1 of 1) 13828 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 160.5-75 chr8 11822523 11822888 + 0.75 NA intron (NM_001287742, intron 6 of 9) AluJo|SINE|Alu 13561 NM_001287751 2222 Hs.593928 NM_004462 ENSG00000079459 FDFT1 DGPT|ERG9|SQS|SQSD|SS farnesyl-diphosphate farnesyltransferase 1 protein-coding 118.25-109 chr8 86356418 86356773 + 0.75 NA intron (NM_007013, intron 1 of 24) intron (NM_007013, intron 1 of 24) 14048 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 206-27 chr5 12139642 12139979 + 0.75 NA Intergenic Intergenic -235364 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 144.75-45 chr2 136440315 136440621 + 0.75 NA Intergenic Intergenic -322313 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 164-70 chr8 138813127 138813409 + 0.75 NA intron (NM_152888, intron 7 of 64) THE1B|LTR|ERVL-MaLR 100773 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 135.25-12 chr10 64826930 64827206 + 0.75 NA TTS (NR_001446) TTS (NR_001446) 1540 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 123-72 chrX 3184016 3184335 + 0.75 NA Intergenic Intergenic -87645 NR_038428 100129464 Hs.187816 NR_038428 ENSG00000228459 LINC01546 CXorf28 long intergenic non-protein coding RNA 1546 ncRNA 151-54 chr5 40812194 40812494 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -14149 NM_001355034 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 136.25-7 chr10 31462261 31462581 + 0.75 NA intron (NM_001323678, intron 2 of 6) L2c|LINE|L2 -62666 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 239-21 chr2 174158866 174159426 + 0.75 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 89386 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 145-25 chr15 81302484 81302738 + 0.75 NA intron (NM_001352686, intron 15 of 18) intron (NM_001352686, intron 15 of 18) 5641 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 135.5-39 chr16 19383369 19383613 + 0.75 NA Intergenic L1MC3|LINE|L1 -27048 NM_001308161 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 127 chr1 48110708 48110918 + 0.75 NA intron (NR_026749, intron 9 of 9) intron (NR_026749, intron 9 of 9) 71615 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 156.5-14 chr12 112332850 112333310 + 0.75 NA intron (NM_001109662, intron 1 of 75) L1MB8|LINE|L1 49351 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 156.5-92 chr8 144616129 144616549 + 0.75 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -2836 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 154.5-57 chr4 41604693 41605013 + 0.75 NA intron (NM_001289122, intron 5 of 25) intron (NM_001289122, intron 5 of 25) -7856 NM_001330793 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 150.5-84 chr7 10140984 10141340 + 0.75 NA Intergenic L2c|LINE|L2 506892 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 273.25-8 chr20 17239171 17239671 + 0.75 NA intron (NM_001201529, intron 1 of 10) intron (NM_001201529, intron 1 of 10) 12381 NM_001201529 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 149-33 chr21 33963922 33964194 + 0.75 NA intron (NR_134558, intron 2 of 2) (TCAT)n|Simple_repeat|Simple_repeat -12324 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 129.5-80 chr5 158686720 158687111 + 0.75 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -277142 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 177.75-32 chr22 30007148 30007613 + 0.75 NA TTS (NR_106876) TTS (NR_106876) 331 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 182.25-15 chr16 24453383 24453811 + 0.75 NA Intergenic AluSq2|SINE|Alu -85969 NM_006910 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 163-18 chr17 72760014 72760469 + 0.75 NA intron (NM_001352692, intron 6 of 9) AluSz6|SINE|Alu -119769 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 185.75-34 chr2 240024105 240024471 + 0.75 NA intron (NR_136155, intron 1 of 8) L1MC3|LINE|L1 1054 NR_136157 4705 Hs.277677 NM_004544 ENSG00000130414 NDUFA10 CI-42KD|CI-42k|MC1DN22 NADH:ubiquinone oxidoreductase subunit A10 protein-coding 122.5-52 chr2 124760254 124760519 + 0.75 NA intron (NM_130773, intron 14 of 23) intron (NM_130773, intron 14 of 23) 735099 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 138.5-3 chr1 66450942 66451171 + 0.75 NA Intergenic Intergenic -82537 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 127.75-78 chr5 87224536 87224832 + 0.75 NA intron (NR_130914, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 14517 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 220.75-5 chr12 10395195 10395792 + 0.75 NA intron (NM_001199805, intron 4 of 12) intron (NM_001199805, intron 4 of 12) -5452 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 215.25-38 chr7 55985279 55985652 + 0.75 NA intron (NM_001202469, intron 5 of 7) AluJo|SINE|Alu 20880 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 151.25-40 chr3 98985586 98985950 + 0.75 NA Intergenic Intergenic -84073 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 138.25-19 chr12 43542010 43542435 + 0.75 NA intron (NM_025003, intron 2 of 38) A-rich|Low_complexity|Low_complexity 9981 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 116.5-114 chr7 83761001 83761262 + 0.75 NA Intergenic MER8|DNA|TcMar-Tigger -111992 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 176.25-34 chr2 127941192 127941488 + 0.75 NA 3' UTR (NM_001330302, exon 21 of 21) 3' UTR (NM_001330302, exon 21 of 21) -55400 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 160.5-64 chr6 53493027 53493378 + 0.75 NA Intergenic MIR3|SINE|MIR 51899 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 144.75-42 chr2 73937615 73937881 + 0.75 NA intron (NR_134897, intron 2 of 5) L2c|LINE|L2 10868 NR_134896 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 192-34 chr3 96638042 96638470 + 0.75 NA Intergenic L1PREC2|LINE|L1 -176338 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 149.75-49 chr5 39458480 39458774 + 0.75 NA Intergenic L2b|LINE|L2 -33394 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 186.25-56 chr8 143381954 143382285 + 0.75 NA intron (NM_052924, intron 14 of 14) intron (NM_052924, intron 14 of 14) 13243 NM_052924 114822 Hs.521912 NM_052924 ENSG00000158106 RHPN1 ODF5|RHOPHILIN|RHPN rhophilin Rho GTPase binding protein 1 protein-coding 132.5-102 chr6 128767330 128767692 + 0.75 NA Intergenic THE1C-int|LTR|ERVL-MaLR -115627 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 170-12 chr14 60875508 60875882 + 0.75 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 105384 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 131.5-20 chr12 11826412 11826615 + 0.75 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 176659 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 113.75-65 chr21 16256799 16257020 + 0.75 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 27859 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 119-24 chr14 53411613 53411946 + 0.75 NA Intergenic Intergenic 258425 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 153.5-61 chr3 37245645 37245986 + 0.75 NA intron (NM_001172713, intron 1 of 22) AluSx|SINE|Alu -1620 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 179.75-28 chr2 134924303 134924776 + 0.75 NA intron (NR_135468, intron 2 of 9) AluSg|SINE|Alu 5717 NM_001320749 905 Hs.744115 NM_001241 ENSG00000082258 CCNT2 CYCT2 cyclin T2 protein-coding 152.75-9 chr11 100854221 100854479 + 0.75 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -79924 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 139-52 chr4 31606351 31606613 + 0.75 NA Intergenic ERV24B_Prim-int|LTR|ERV1 99938 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 145-31 chr2 49365329 49365561 + 0.75 NA Intergenic L1MEf|LINE|L1 -210918 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 145.75-48 chr21 18192766 18193068 + 0.75 NA intron (NM_001204178, intron 2 of 5) Charlie6|DNA|hAT-Charlie -51916 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 130-61 chr5 21199862 21200054 + 0.75 NA Intergenic L1MA4|LINE|L1 -259522 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 159-18 chr13 36004030 36004273 + 0.75 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 127231 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 113.5-26 chr12 46407167 46407335 + 0.75 NA intron (NR_125381, intron 2 of 2) Tigger10|DNA|TcMar-Tigger 23144 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 169.25-42 chr4 86368746 86369055 + 0.75 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 1967 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 149-19 chr16 53961562 53961791 + 0.75 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -77717 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 136.25-10 chr10 84827145 84827365 + 0.75 NA Intergenic Intergenic 371650 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 156.75-95 chrX 55720038 55720295 + 0.75 NA intron (NR_148687, intron 2 of 12) intron (NR_148687, intron 2 of 12) 2417 NM_006064 10325 Hs.50282 NM_006064 ENSG00000083750 RRAGB RAGB|bA465E19.1 Ras related GTP binding B protein-coding 127.25-76 chr5 13114394 13114615 + 0.75 NA Intergenic Intergenic -81618 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 114.75-26 chr13 84863521 84863702 + 0.75 NA Intergenic Intergenic 79957 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 140-28 chr17 79064633 79064859 + 0.75 NA Intergenic AluSz|SINE|Alu -10191 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 175-19 chr18 64249138 64249440 + 0.75 NA intron (NR_033983, intron 2 of 2) FLAM_A|SINE|Alu 10766 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 204.25-37 chr3 193739036 193739441 + 0.75 NA Intergenic L1MC2|LINE|L1 104771 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 149.75-55 chr5 156854994 156855404 + 0.75 NA Intergenic L1M1|LINE|L1 4904 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 133-3 chr1 228885224 228885539 + 0.75 NA Intergenic AluJr|SINE|Alu 149902 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 128.25-53 chr4 39261321 39261568 + 0.75 NA intron (NM_025132, intron 28 of 36) MER30|DNA|hAT-Charlie 78915 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 157.5-55 chr2 118662708 118663121 + 0.75 NA Intergenic MIRc|SINE|MIR -59948 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 217.25-31 chr7 92864764 92865084 + 0.75 NA intron (NR_110087, intron 2 of 2) AluSz|SINE|Alu -28297 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 116.25-30 chr16 61670802 61671054 + 0.75 NA intron (NM_001796, intron 10 of 11) MER44D|DNA|TcMar-Tigger 365510 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 187.25-19 chr13 37722848 37723280 + 0.75 NA intron (NM_001135958, intron 2 of 9) intron (NM_001135958, intron 2 of 9) -124220 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 118.5-53 chr18 61589517 61589776 + 0.75 NA Intergenic Intergenic -158530 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 128.75-46 chr2 187755102 187755301 + 0.75 NA Intergenic L1M1|LINE|L1 -200696 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 220.25-11 chr11 60668827 60669234 + 0.75 NA intron (NR_026946, intron 6 of 6) Tigger1|DNA|TcMar-Tigger -30582 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 154.25-11 chr10 116038473 116038771 + 0.75 NA Intergenic L1MEd|LINE|L1 156167 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 117.75-80 chr8 77526270 77526607 + 0.75 NA Intergenic Intergenic 75741 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 176-10 chr10 110785689 110786047 + 0.75 NA intron (NM_001134363, intron 5 of 13) intron (NM_001134363, intron 5 of 13) 85036 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 155-63 chr8 126662229 126662606 + 0.75 NA Intergenic Intergenic -103939 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 169-19 chr16 1703086 1703575 + 0.75 NA Intergenic Intergenic -2853 NM_001318852 23162 Hs.207763 NM_015133 ENSG00000138834 MAPK8IP3 JIP-3|JIP3|JSAP1|NEDBA|SYD2|syd mitogen-activated protein kinase 8 interacting protein 3 protein-coding 136-27 chr19 13521322 13521616 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -14990 NM_001174080 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 113.25-105 chr7 41164919 41165270 + 0.75 NA Intergenic Intergenic 63490 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 155-17 chr13 79242809 79243033 + 0.75 NA Intergenic Intergenic 163300 NM_001286632 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 125-20 chr12 62919950 62920187 + 0.75 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 15082 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 246.25-4 chr11 80457291 80457906 + 0.75 NA Intergenic Intergenic 305205 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 163.75-66 chr6 152325502 152325916 + 0.75 NA intron (NM_182961, intron 80 of 145) intron (NM_182961, intron 80 of 145) -54821 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 233.75-22 chr3 107154828 107155205 + 0.75 NA intron (NR_028303, intron 1 of 3) Charlie17a|DNA|hAT-Charlie 85622 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 175.5-72 chr7 25797349 25797797 + 0.75 NA Intergenic Intergenic -7454 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 151.25-33 chr20 11146396 11146648 + 0.75 NA Intergenic Intergenic 119978 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 114.5-36 chr17 63250904 63251274 + 0.75 NA intron (NM_025185, intron 7 of 25) L2c|LINE|L2 189178 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 116-46 chr3 197829961 197830156 + 0.75 NA intron (NM_001365717, intron 6 of 19) MIR3|SINE|MIR 38804 NM_001365718 84859 Hs.518414 NM_032773 ENSG00000186001 LRCH3 - leucine rich repeats and calponin homology domain containing 3 protein-coding 134.25-61 chr4 43429565 43429849 + 0.75 NA Intergenic Intergenic 62836 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 192.75-40 chr6 105939204 105939542 + 0.75 NA Intergenic MIRc|SINE|MIR -146963 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 156.75-8 chr10 30336275 30336507 + 0.75 NA intron (NM_018109, intron 4 of 8) L1M5|LINE|L1 12947 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 156-73 chrX 79178560 79178796 + 0.75 NA Intergenic L1MA1|LINE|L1 7706 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 149.25-9 chr10 116744910 116745359 + 0.75 NA intron (NM_001330164, intron 2 of 12) L2a|LINE|L2 -2568 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 127.75-91 chr7 114585389 114585665 + 0.75 NA intron (NM_148898, intron 4 of 17) MER5A1|DNA|hAT-Charlie -67818 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 145.5-80 chr5 162337332 162337711 + 0.75 NA Intergenic L3|LINE|CR1 269879 NM_198903 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 173.5-37 chr18 76059524 76059823 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -63325 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 184.75-2 chr1 62617889 62618223 + 0.75 NA intron (NM_001367561, intron 14 of 49) L2|LINE|L2 20536 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 187-37 chr3 47548102 47548452 + 0.75 NA Intergenic AluJo|SINE|Alu 30588 NM_001206943 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 113.75-37 chr14 61896199 61896526 + 0.75 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -31333 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 137.5-43 chr17 48807230 48807470 + 0.75 NA intron (NM_001130918, intron 1 of 15) AluSp|SINE|Alu 9740 NM_001366314 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 126.25-39 chr2 18219202 18219400 + 0.75 NA Intergenic Intergenic 340634 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 158.5-17 chr10 74852143 74852370 + 0.75 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) 25656 NM_001370137 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 196.25-64 chr8 34467198 34467577 + 0.75 NA Intergenic Intergenic -316534 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 113.25-45 chr15 61672074 61672338 + 0.75 NA Intergenic Intergenic -57712 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 148.25-6 chr10 3745206 3745676 + 0.75 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 39768 NR_027653 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 132.5-72 chr3 51616480 51616719 + 0.75 NA intron (NM_001322253, intron 4 of 23) AluSx1|SINE|Alu -54576 NR_024012 51368 Hs.517864 NM_015926 ENSG00000164081 TEX264 ZSIG11 testis expressed 264, ER-phagy receptor protein-coding 125.75-20 chr13 51199615 51199853 + 0.75 NA Intergenic Intergenic -22600 NM_001330522 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 116.25-95 chr8 132094324 132094539 + 0.75 NA intron (NM_001145095, intron 6 of 15) L2a|LINE|L2 10834 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 186.25-60 chrX 10286647 10287070 + 0.75 NA Intergenic MLT1H1|LTR|ERVL-MaLR 129883 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 141.5-111 chr8 86542798 86543185 + 0.75 NA intron (NM_003909, intron 8 of 16) intron (NM_003909, intron 8 of 16) 28556 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 187.5-72 chr7 6159484 6159831 + 0.75 NA intron (NM_032172, intron 17 of 17) intron (NM_032172, intron 17 of 17) 12480 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 211.25-13 chr17 33274132 33274661 + 0.75 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR 18592 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 175-14 chr13 80884997 80885319 + 0.75 NA Intergenic Intergenic -133233 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 225.25 chr1 101892902 101893446 + 0.75 NA non-coding (NR_033424, exon 2 of 2) non-coding (NR_033424, exon 2 of 2) 21162 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 135.5-22 chr12 6512766 6512990 + 0.75 NA intron (NM_014865, intron 6 of 31) L2-1_AMi|LINE|L2 2656 NR_004387 692148 NR_004387 ENSG00000239002 SCARNA10 U85 small Cajal body-specific RNA 10 ncRNA 163.25-41 chr21 29975901 29976286 + 0.75 NA Intergenic Intergenic -36041 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 121.5-70 chr20 21377589 21377759 + 0.75 NA intron (NM_001317960, intron 27 of 29) intron (NM_001317960, intron 27 of 29) 19852 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 148.75-76 chr9 93556870 93557126 + 0.75 NA intron (NM_001286722, intron 13 of 17) Tigger17a|DNA|TcMar-Tigger -19586 NM_005392 5253 Hs.211441 NM_005392 ENSG00000197724 PHF2 CENP-35|GRC5|JHDM1E|KDM7C PHD finger protein 2 protein-coding 231.5-34 chr4 117551786 117552123 + 0.75 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 123556 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 239-5 chr1 232903837 232904583 + 0.75 NA Intergenic Intergenic -46401 NR_138025 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 121-55 chr5 29879675 29879903 + 0.75 NA promoter-TSS (NR_134264) promoter-TSS (NR_134264) -771 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 135.75-67 chr3 169598249 169598547 + 0.75 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 65314 NM_004991 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 207.25-33 chr8 130426980 130427348 + 0.75 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 16496 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 126-43 chr2 54346885 54347080 + 0.75 NA intron (NM_001369403, intron 2 of 3) intron (NM_001369403, intron 2 of 3) 16098 NM_001100396 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 113.5-68 chr20 19881084 19881395 + 0.75 NA Intergenic MER63A|DNA|hAT-Blackjack -5282 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 139-23 chr16 79472239 79472578 + 0.75 NA Intergenic L1MB7|LINE|L1 128329 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 113.5-120 chr8 122652456 122652682 + 0.75 NA Intergenic L1M1|LINE|L1 41537 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 160.75-28 chr18 2274451 2274772 + 0.75 NA Intergenic Intergenic 296894 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 147-67 chr5 171765976 171766308 + 0.75 NA Intergenic HAL1M8|LINE|L1 -19730 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 122.75-16 chr11 108334806 108335128 + 0.75 NA intron (NM_001351834, intron 55 of 63) intron (NM_001351834, intron 55 of 63) 111438 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 113-68 chr4 30738539 30738808 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 18304 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 133.25-17 chr11 115881556 115881906 + 0.75 NA Intergenic L1ME3A|LINE|L1 -121531 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 121.5-10 chr1 221429020 221429206 + 0.75 NA Intergenic L1M4|LINE|L1 -92817 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 114.25-13 chr10 99787958 99788169 + 0.75 NA intron (NM_000392, intron 2 of 31) AluJb|SINE|Alu 5423 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 206.5-8 chr10 125876439 125876880 + 0.75 NA intron (NM_018180, intron 1 of 10) L1MC4|LINE|L1 4633 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 150-26 chr16 86276601 86276931 + 0.75 NA intron (NR_104139, intron 1 of 5) THE1D|LTR|ERVL-MaLR 9481 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 263.5-14 chr2 68300947 68301524 + 0.75 NA intron (NM_015463, intron 2 of 2) L1MD|LINE|L1 18816 NM_001111101 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 137-14 chr11 76410551 76410846 + 0.75 NA intron (NR_130990, intron 3 of 3) intron (NR_130990, intron 3 of 3) 29375 NM_001305225 100506127 Hs.503319 NM_001013634 ENSG00000179240 GVQW3 - GVQW motif containing 3 protein-coding 166-59 chr8 92020005 92020489 + 0.75 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) -2567 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 126.25-69 chr5 16522573 16522965 + 0.75 NA intron (NM_001034850, intron 3 of 8) AluJr4|SINE|Alu -13771 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 210.5-47 chr4 157784262 157784736 + 0.75 NA Intergenic Intergenic 212009 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 189-17 chr13 56945517 56945927 + 0.75 NA Intergenic Intergenic -195196 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 196-20 chr18 1076422 1076896 + 0.75 NA Intergenic Intergenic -148666 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 172-43 chr8 51517374 51517661 + 0.75 NA intron (NM_144651, intron 4 of 22) intron (NM_144651, intron 4 of 22) 291928 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 191.5-52 chr5 43971861 43972304 + 0.75 NA Intergenic Intergenic -368852 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 126.5-42 chr17 59527403 59527731 + 0.75 NA promoter-TSS (NR_110813) promoter-TSS (NR_110813) -710 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 185-23 chr20 37154437 37154772 + 0.75 NA intron (NM_213632, intron 8 of 12) intron (NM_213632, intron 8 of 12) -24442 NM_001324305 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 233.75-25 chr4 65015311 65015785 + 0.75 NA Intergenic MIR|SINE|MIR -11048 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 212.75-19 chr20 33233289 33233694 + 0.75 NA Intergenic Intergenic -2505 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 113-102 chr8 79813287 79813530 + 0.75 NA intron (NR_110954, intron 3 of 5) AluSx1|SINE|Alu 45266 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 125-39 chr17 68424130 68424388 + 0.75 NA TTS (NR_030365) TTS (NR_030365) 289 NR_030365 693220 NR_030365 ENSG00000207561 MIR635 MIRN635|hsa-mir-635 microRNA 635 ncRNA 149-11 chr12 22281243 22281682 + 0.75 NA intron (NM_003034, intron 2 of 4) intron (NM_003034, intron 2 of 4) 53252 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 142.75-35 chr17 72704788 72705124 + 0.75 NA intron (NM_001352692, intron 7 of 9) MLT1K|LTR|ERVL-MaLR -64484 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 183-29 chr16 68740485 68740903 + 0.75 NA intron (NM_001317185, intron 2 of 15) intron (NM_001317185, intron 2 of 15) 3402 NM_004360 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 135.5-10 chr10 84268912 84269278 + 0.75 NA Intergenic Intergenic -10885 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 146.25-73 chr8 108617348 108617630 + 0.75 NA intron (NR_136411, intron 2 of 3) MamTip2|DNA|hAT-Tip100 170105 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 126-34 chr16 70711859 70712122 + 0.75 NA intron (NM_001351157, intron 13 of 17) intron (NM_001351157, intron 13 of 17) -25937 NM_138383 92154 Hs.432387 NM_138383 ENSG00000132613 MTSS2 ABBA|ABBA-1|ABBA1|MTSS1L MTSS I-BAR domain containing 2 protein-coding 131.75-30 chr14 74215994 74216304 + 0.75 NA Intergenic L1ME4b|LINE|L1 -23300 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 178.25-29 chr2 88603237 88603594 + 0.75 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 21514 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 123-68 chr8 119213862 119214271 + 0.75 NA TTS (NR_149111) TTS (NR_149111) 5703 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 148.5-89 chr6 65362230 65362522 + 0.75 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 60958 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 205-26 chr21 16592996 16593426 + 0.75 NA intron (NR_136548, intron 2 of 3) intron (NR_136548, intron 2 of 3) 2974 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 177.75-20 chr19 27842071 27842554 + 0.75 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -48372 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 171.75-16 chr12 96423818 96424123 + 0.75 NA Intergenic Intergenic -23531 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 173.75-46 chr7 6375604 6375856 + 0.75 NA intron (NM_006908, intron 1 of 5) intron (NM_006908, intron 1 of 5) 1203 NM_006908 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 116.75-2 chr1 115200700 115200920 + 0.75 NA Intergenic L1PB3|LINE|L1 -82224 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 125.25-28 chr15 98755852 98756108 + 0.75 NA intron (NM_000875, intron 2 of 20) L1MC|LINE|L1 -28446 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 115-10 chr10 7928741 7928900 + 0.75 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 110315 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 151.5-18 chr11 103881809 103882312 + 0.75 NA Intergenic Intergenic 32154 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 135.5-56 chr2 171327227 171327479 + 0.75 NA intron (NM_001321158, intron 6 of 8) MER117|DNA|hAT-Charlie -96060 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 170-49 chr8 26438544 26438933 + 0.75 NA Intergenic AluJb|SINE|Alu 48325 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 127-80 chr6 37835377 37835660 + 0.75 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 15791 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 173.5-89 chr6 26244984 26245279 + 0.75 NA Intergenic Intergenic 1846 NM_003547 8369 Hs.553507 NM_003547 ENSG00000275663 HIST1H4G H4/l|H4FL histone cluster 1 H4 family member g protein-coding 138.25-50 chr20 7524255 7524559 + 0.75 NA Intergenic L1ME3A|LINE|L1 152799 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 130.25-92 chr8 134123076 134123329 + 0.75 NA Intergenic L1M4|LINE|L1 236706 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 124.25-64 chr4 72155843 72156166 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 116872 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 224.5-3 chr1 102800154 102800792 + 0.75 NA Intergenic Intergenic 308023 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 140.75-15 chr12 118955254 118955550 + 0.75 NA Intergenic Intergenic -26139 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 161.25-29 chr18 4362160 4362643 + 0.75 NA intron (NM_001242761, intron 1 of 11) L1MB3|LINE|L1 92865 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 149.5-113 chr9 36745487 36745728 + 0.75 NA Intergenic AluSc|SINE|Alu 77992 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 145.5-81 chr6 38059100 38059332 + 0.75 NA intron (NM_021943, intron 2 of 5) L1ME3Cz|LINE|L1 239489 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 143.5-81 chr5 26667886 26668289 + 0.75 NA Intergenic Intergenic 370499 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 125.5-13 chr10 43407050 43407237 + 0.75 NA intron (NM_001098204, intron 1 of 3) CpG 708 NM_001098206 3185 Hs.808 NM_004966 ENSG00000169813 HNRNPF HNRPF|OK/SW-cl.23|mcs94-1 heterogeneous nuclear ribonucleoprotein F protein-coding 144.75-48 chr20 44371105 44371463 + 0.75 NA intron (NM_175914, intron 1 of 9) AluSq2|SINE|Alu 15483 NM_001287183 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 141-13 chr11 29954710 29955075 + 0.75 NA Intergenic L1PA13|LINE|L1 27501 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 136-65 chr8 62831483 62831698 + 0.75 NA intron (NM_001304533, intron 4 of 6) L1PA16|LINE|L1 -146271 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 170.75-35 chr2 43719885 43720206 + 0.75 NA intron (NM_172069, intron 15 of 29) L1PB4|LINE|L1 -43616 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 149.75-35 chr21 29458239 29458589 + 0.75 NA Intergenic Intergenic -37633 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 117-77 chr6 124124128 124124409 + 0.75 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -158737 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 157-25 chr18 2213556 2213930 + 0.75 NA Intergenic L1MEf|LINE|L1 357762 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 146.75-39 chr4 88243926 88244273 + 0.75 NA Intergenic MER52D|LTR|ERV1 -12473 NM_001257386 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 134-38 chr2 132942283 132942582 + 0.75 NA intron (NM_207481, intron 8 of 17) MER5A|DNA|hAT-Charlie 26875 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 139-42 chr21 29728058 29728382 + 0.75 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -19955 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 184.25-44 chr6 55042418 55042754 + 0.75 NA Intergenic L1MA5|LINE|L1 -63874 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 141-40 chr2 164730967 164731326 + 0.75 NA intron (NM_001365670, intron 3 of 13) MER58A|DNA|hAT-Charlie -43369 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 188-16 chr17 74752800 74753096 + 0.75 NA intron (NM_004252, intron 1 of 5) intron (NM_004252, intron 1 of 5) 4320 NM_004252 9368 Hs.724482 NM_004252 ENSG00000109062 SLC9A3R1 EBP50|NHERF|NHERF-1|NHERF1|NPHLOP2 SLC9A3 regulator 1 protein-coding 136.25-23 chr14 34718090 34718378 + 0.75 NA Intergenic Intergenic -3411 NR_028130 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 141-54 chr3 40733233 40733476 + 0.75 NA Intergenic L1PB|LINE|L1 208394 NM_001098414 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 154-66 chr8 105507185 105507642 + 0.75 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 187870 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 121.25-86 chr8 132457283 132457583 + 0.75 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -10171 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 212-29 chr20 19564826 19565183 + 0.75 NA intron (NM_020689, intron 3 of 16) AluSx|SINE|Alu -280408 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 150-40 chr2 176905730 176906108 + 0.75 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat 268165 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 118-57 chr5 80411201 80411499 + 0.75 NA intron (NM_001284237, intron 1 of 3) L1ME4a|LINE|L1 3286 NM_001105251 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 125.25-31 chr17 22693528 22693802 + 0.75 NA Intergenic Intergenic 170554 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 139.5-59 chr3 68971991 68972276 + 0.75 NA Intergenic MIRb|SINE|MIR -39523 NM_001005527 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 120.5-14 chr10 115291915 115292152 + 0.75 NA intron (NM_207303, intron 15 of 28) L1MA5A|LINE|L1 198668 NR_074088 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 135.25-52 chr2 238266303 238266531 + 0.75 NA intron (NM_022817, intron 8 of 22) FLAM_C|SINE|Alu 22193 NM_022817 8864 Hs.58756 NM_003894 ENSG00000132326 PER2 FASPS|FASPS1 period circadian regulator 2 protein-coding 173.5-23 chr14 57591341 57591663 + 0.75 NA intron (NM_001352016, intron 2 of 3) intron (NM_001352016, intron 2 of 3) -97645 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 171.5-7 chr10 51142158 51142494 + 0.75 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 67839 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 118.5-86 chr5 85874728 85875040 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL -407560 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 217.5-29 chr3 99045016 99045346 + 0.75 NA Intergenic L1PB4|LINE|L1 -143486 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 125-35 chr17 45024449 45024649 + 0.75 NA exon (NM_001128631, exon 5 of 5) exon (NM_001128631, exon 5 of 5) 27083 NM_001288655 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 126.75-58 chr3 47909057 47909401 + 0.75 NA intron (NM_002375, intron 8 of 18) intron (NM_002375, intron 8 of 18) 59674 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 155.5-29 chr12 90509435 90509671 + 0.75 NA Intergenic L1P3|LINE|L1 216235 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 189-20 chr15 84984018 84984347 + 0.75 NA intron (NM_173454, intron 1 of 20) intron (NM_173454, intron 1 of 20) 2208 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 158.5-52 chr2 10220610 10220863 + 0.75 NA Intergenic L1MB3|LINE|L1 -28065 NR_036222 100422929 NR_036222 ENSG00000265418 MIR4261 - microRNA 4261 ncRNA 184.25-23 chr2 208379318 208379638 + 0.75 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 19786 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 164-48 chr5 134549541 134549942 + 0.75 NA intron (NM_015288, intron 3 of 10) intron (NM_015288, intron 3 of 10) 23633 NM_015288 23338 Hs.732155 NM_015288 ENSG00000043143 JADE2 JADE-2|PHF15 jade family PHD finger 2 protein-coding 161.75-13 chr12 83211432 83211681 + 0.75 NA Intergenic Intergenic 524401 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 214.75-2 chr1 213781230 213781634 + 0.75 NA Intergenic Intergenic -143317 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 233.5-51 chr7 93782514 93782909 + 0.75 NA Intergenic L1MEg|LINE|L1 65783 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 179.75-45 chr5 139161943 139162248 + 0.75 NA intron (NM_022464, intron 1 of 9) intron (NM_022464, intron 1 of 9) 36273 NM_001037633 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 132.75-40 chr15 61274656 61274930 + 0.75 NA Intergenic Intergenic -45491 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 114.25-102 chr8 46663783 46664025 + 0.75 NA Intergenic L1MD|LINE|L1 -46261 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 164-16 chr13 54871951 54872267 + 0.75 NA Intergenic AluJr|SINE|Alu -302345 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 129.5-91 chr8 136586087 136586340 + 0.75 NA intron (NR_147196, intron 2 of 5) AluSz|SINE|Alu 55415 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 183.75-19 chr14 89681366 89681740 + 0.75 NA Intergenic Intergenic -62388 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 126.25-63 chr4 41620647 41620836 + 0.75 NA intron (NM_001330672, intron 7 of 31) intron (NM_001330672, intron 7 of 31) 7839 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 270.5-7 chr14 71795174 71795618 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -136775 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 132.75-60 chr21 28413338 28413578 + 0.75 NA Intergenic Intergenic -125860 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 150-24 chr16 26208999 26209267 + 0.75 NA Intergenic L1MA8|LINE|L1 183896 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 231.75-15 chr2 25259199 25259567 + 0.75 NA intron (NR_135490, intron 6 of 23) intron (NR_135490, intron 6 of 23) -7068 NM_153759 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 186.75-8 chr12 84887376 84887699 + 0.75 NA intron (NM_001146335, intron 1 of 10) intron (NM_001146335, intron 1 of 10) 25262 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 124.25-39 chr17 61712434 61712688 + 0.75 NA intron (NM_032043, intron 17 of 19) intron (NM_032043, intron 17 of 19) -121342 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 116.75-88 chr9 130176738 130176919 + 0.75 NA intron (NM_014286, intron 1 of 7) intron (NM_014286, intron 1 of 7) 4424 NM_014286 23413 Hs.642946 NM_014286 ENSG00000107130 NCS1 FLUP|FREQ neuronal calcium sensor 1 protein-coding 139.5-42 chr2 66870082 66870379 + 0.75 NA Intergenic L2a|LINE|L2 -34206 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 131-51 chr4 181575378 181575649 + 0.75 NA Intergenic HAL1ME|LINE|L1 254460 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 119.25-7 chr10 27735622 27735910 + 0.75 NA intron (NM_001242702, intron 3 of 6) L2b|LINE|L2 -8849 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 220-11 chr14 67049932 67050408 + 0.75 NA intron (NM_001024218, intron 9 of 21) L1MA8|LINE|L1 -139270 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 135.25-10 chr10 61066150 61066490 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger 50045 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 146.5-91 chr8 118427832 118428144 + 0.75 NA intron (NM_001349811, intron 3 of 4) L1ME2|LINE|L1 -193013 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 265.25-10 chr12 60001925 60002625 + 0.75 NA Intergenic L1PREC2|LINE|L1 312905 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 112.75-69 chr5 143107411 143107716 + 0.75 NA intron (NR_146198, intron 17 of 22) intron (NR_146198, intron 17 of 22) -84937 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 124-41 chr3 118795659 118796027 + 0.75 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 14990 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 129-40 chr20 55876965 55877145 + 0.75 NA Intergenic MER1B|DNA|hAT-Charlie 128464 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 115.5-13 chr10 132513750 132514045 + 0.75 NA intron (NR_158224, intron 2 of 3) L1M5|LINE|L1 23026 NR_158224 107984282 Hs.142505 NR_158224 LOC107984282 - uncharacterized LOC107984282 ncRNA 146-52 chr6 70050685 70050957 + 0.75 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 184265 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 116.5-61 chr2 115368408 115368618 + 0.75 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 24698 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 153.5-82 chr6 44374162 44374450 + 0.75 NA intron (NM_145026, intron 7 of 8) L1MC4|LINE|L1 -13400 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 127.75-85 chr6 142076232 142076492 + 0.75 NA intron (NM_001324308, intron 2 of 2) intron (NM_001324308, intron 2 of 2) 12437 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 129-27 chr16 78242490 78242757 + 0.75 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 142969 NM_001291997 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 172-11 chr13 98202381 98202786 + 0.75 NA intron (NM_005766, intron 1 of 26) intron (NM_005766, intron 1 of 26) -5941 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 211.25-24 chr20 55363252 55363594 + 0.75 NA Intergenic L2a|LINE|L2 -59620 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 214.75-20 chr2 228228089 228228546 + 0.75 NA Intergenic Intergenic -46630 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 175.75-20 chr2 143718932 143719260 + 0.75 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -217971 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 138.75-24 chr15 52987506 52987925 + 0.75 NA Intergenic L1MA6|LINE|L1 -128650 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 114.75-100 chr8 20356646 20356912 + 0.75 NA Intergenic Intergenic -52816 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 211-32 chr7 134476521 134476816 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -17429 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 129.25-58 chr4 142807437 142807670 + 0.75 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 38982 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 254.25-27 chr8 136725818 136726490 + 0.75 NA intron (NR_147196, intron 2 of 5) (TA)n|Simple_repeat|Simple_repeat 195356 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 125.25-14 chr11 20499062 20499250 + 0.75 NA intron (NM_005788, intron 15 of 15) L1MEc|LINE|L1 -100244 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 129.25-4 chr1 157368324 157368575 + 0.75 NA Intergenic Intergenic 184066 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 122.75-74 chr6 89319008 89319372 + 0.75 NA Intergenic L1PB3|LINE|L1 -3891 NM_002043 2570 Hs.379330 NM_002043 ENSG00000111886 GABRR2 - gamma-aminobutyric acid type A receptor rho2 subunit protein-coding 204.25-36 chr3 74075039 74075516 + 0.75 NA Intergenic L1MB4|LINE|L1 266033 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 167.5-90 chr8 142018698 142019108 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -157436 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 121.25-30 chr17 53074309 53074521 + 0.75 NA Intergenic L1PREC2|LINE|L1 88910 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 121.25-20 chr14 55074908 55075166 + 0.75 NA Intergenic Intergenic 23390 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 125-75 chr4 188573165 188573429 + 0.75 NA intron (NR_033869, intron 4 of 4) ERVL-B4-int|LTR|ERVL 117719 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 208.75-9 chr11 99372486 99372921 + 0.75 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -183442 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 114-10 chr10 32907284 32907475 + 0.75 NA intron (NM_033668, intron 14 of 15) intron (NM_033668, intron 14 of 15) -5907 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 197.25-32 chr17 5588416 5588886 + 0.75 NA Intergenic LTR10B|LTR|ERV1 -4142 NM_033004 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 185.75-40 chr3 27796632 27797109 + 0.75 NA promoter-TSS (NR_146630) promoter-TSS (NR_146630) -718 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 164-59 chr7 95851597 95851861 + 0.75 NA intron (NM_004411, intron 5 of 16) AluSp|SINE|Alu 79223 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 126-14 chr10 100326595 100326888 + 0.75 NA intron (NM_016112, intron 2 of 15) MIRb|SINE|MIR 3487 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 117.25-56 chr3 21784026 21784258 + 0.75 NA Intergenic Intergenic -32932 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 159.25-32 chr2 16027177 16027485 + 0.75 NA Intergenic Intergenic -23096 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 182-13 chr14 54312543 54312982 + 0.75 NA Intergenic MIRb|SINE|MIR -84106 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 130.75-66 chr6 81625529 81625809 + 0.75 NA Intergenic Intergenic 127012 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 140.75-19 chr14 85648897 85649198 + 0.75 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 115698 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 149.25-10 chr10 116837719 116837945 + 0.75 NA intron (NM_001330164, intron 1 of 12) intron (NM_001330164, intron 1 of 12) -10264 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 113-3 chr1 63919682 63919895 + 0.75 NA intron (NM_005012, intron 1 of 8) MIR|SINE|MIR 145771 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 132.75-58 chr20 32102971 32103217 + 0.75 NA Intergenic Intergenic -6620 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 164.75-55 chr5 26778234 26778496 + 0.75 NA Intergenic Intergenic 260221 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 123.75-24 chr11 115330850 115331130 + 0.75 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -2587 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 145.25-53 chr3 190675367 190675822 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 161509 NM_134470 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 114.25-86 chr5 85993340 85993580 + 0.75 NA Intergenic Intergenic -288984 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 117.5-85 chr6 111844274 111844539 + 0.75 NA intron (NM_153047, intron 2 of 13) intron (NM_153047, intron 2 of 13) 28665 NM_153047 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 127.25-96 chr8 134883552 134883806 + 0.75 NA Intergenic Intergenic 33744 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 208.25-2 chr1 49371943 49372316 + 0.75 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 99956 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 172-46 chr8 110324694 110325080 + 0.75 NA Intergenic Intergenic -349116 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 135.5-68 chr21 34054579 34054876 + 0.75 NA Intergenic Intergenic -18851 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 117-29 chr18 71186670 71186847 + 0.75 NA Intergenic Intergenic 392198 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 131-82 chr9 8169231 8169527 + 0.75 NA Intergenic Intergenic -369601 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 115.25-75 chr5 28384672 28384849 + 0.75 NA Intergenic Intergenic -97095 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 129.25-23 chr13 25531594 25531781 + 0.75 NA intron (NM_016529, intron 4 of 36) Tigger4b|DNA|TcMar-Tigger 62913 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 152.5-28 chr12 119577366 119577632 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie -16275 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 150.75-76 chr8 145009498 145009821 + 0.75 NA Intergenic MLT2B1|LTR|ERVL -6760 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 218-49 chr9 130834648 130835216 + 0.75 NA promoter-TSS (NM_005157) promoter-TSS (NM_005157) -322 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 152.25-16 chr12 17811565 17811889 + 0.75 NA Intergenic ERVL47-int|LTR|ERVL 138428 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 155.25-71 chr8 27940934 27941211 + 0.75 NA intron (NM_173833, intron 3 of 8) intron (NM_173833, intron 3 of 8) 51601 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 152.75-34 chr2 184192359 184192719 + 0.75 NA Intergenic Intergenic -186436 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 294.75-8 chr2 43743427 43744058 + 0.75 NA intron (NM_172069, intron 22 of 29) intron (NM_172069, intron 22 of 29) -30297 NM_001348912 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 166.75-58 chr8 80964668 80965023 + 0.75 NA Intergenic L2a|LINE|L2 -90064 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 136.5-67 chr3 7243472 7243725 + 0.75 NA intron (NM_000844, intron 2 of 9) MLT1K|LTR|ERVL-MaLR 291686 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 177.5-36 chr2 120689612 120689907 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -46109 NM_001371271 113.75-77 chr3 143915894 143916249 + 0.75 NA Intergenic L1MA2|LINE|L1 -55727 NM_001363944 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 124-28 chr2 154539316 154539533 + 0.75 NA Intergenic MSTC|LTR|ERVL-MaLR -81986 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 118-28 chr15 38953312 38953653 + 0.75 NA Intergenic Intergenic 256884 NR_160786 252-12 chr16 80311790 80312389 + 0.75 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -228645 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 173.75-8 chr10 32911578 32911963 + 0.75 NA intron (NM_002211, intron 12 of 15) intron (NM_002211, intron 12 of 15) -10298 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 127.25-16 chr10 125833343 125833524 + 0.75 NA intron (NM_078468, intron 5 of 6) intron (NM_078468, intron 5 of 6) 9887 NM_016567 56647 Hs.370292 NM_016567 ENSG00000107949 BCCIP TOK-1|TOK1 BRCA2 and CDKN1A interacting protein protein-coding 123-36 chr3 41123292 41123517 + 0.75 NA Intergenic Intergenic -76101 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 189.25-44 chr8 81052913 81053358 + 0.75 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 58933 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 140.75-56 chr6 88654654 88654985 + 0.75 NA intron (NM_001286428, intron 12 of 13) MER112|DNA|hAT-Charlie -115450 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 220.75-34 chr8 122154432 122154810 + 0.75 NA Intergenic Intergenic 414023 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 136.75-91 chr7 33532585 33532902 + 0.75 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -372172 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 189-18 chr14 44747310 44747740 + 0.75 NA Intergenic L1MA2|LINE|L1 51601 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 141-73 chr7 33217936 33218175 + 0.75 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 88491 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 193.5-16 chr12 14112712 14113110 + 0.75 NA Intergenic Intergenic -132555 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 117-36 chr2 113199411 113199710 + 0.75 NA intron (NM_012455, intron 16 of 16) intron (NM_012455, intron 16 of 16) 25589 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 113.75-118 chr9 115241956 115242248 + 0.75 NA intron (NR_163556, intron 2 of 7) MIRc|SINE|MIR 100284 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 156-61 chr7 33547617 33547904 + 0.75 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -357155 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 208.5-64 chr6 39038217 39038767 + 0.75 NA Intergenic Intergenic -10289 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 175.5-28 chr15 88665313 88665774 + 0.75 NA Intergenic L1M1|LINE|L1 26527 NM_001303237 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 194-12 chr12 117535866 117536185 + 0.75 NA intron (NM_173598, intron 10 of 19) intron (NM_173598, intron 10 of 19) -174223 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 180-42 chr2 233007779 233008190 + 0.75 NA intron (NM_019850, intron 1 of 14) intron (NM_019850, intron 1 of 14) -4630 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 145.5-44 chr2 28229452 28229911 + 0.75 NA intron (NM_199193, intron 8 of 13) AluSz|SINE|Alu -22720 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 196.75-35 chr5 129133383 129133888 + 0.75 NA Intergenic Intergenic 35947 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 163-15 chr16 28010436 28010771 + 0.75 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) 53111 NM_001323900 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 136.25-82 chrX 64857745 64858059 + 0.75 NA Intergenic MLT2A2|LTR|ERVL 118548 NM_018684 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 179.25-43 chr7 7114810 7115096 + 0.75 NA Intergenic Intergenic -18167 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 173-10 chr11 58840107 58840447 + 0.75 NA intron (NM_145016, intron 1 of 5) L1ME4a|LINE|L1 4427 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 147.75-68 chr6 69370155 69370389 + 0.75 NA intron (NM_001704, intron 29 of 31) MIRc|SINE|MIR 426194 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 155-35 chr3 36243904 36244337 + 0.75 NA Intergenic Intergenic -136367 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 157.5-12 chr11 80438218 80438587 + 0.75 NA Intergenic L2c|LINE|L2 324401 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 122.75-59 chr4 57645990 57646273 + 0.75 NA Intergenic Intergenic 220259 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 138-68 chr6 116928027 116928295 + 0.75 NA intron (NM_173560, intron 17 of 18) intron (NM_173560, intron 17 of 18) 50919 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 122.25-64 chr3 124794058 124794386 + 0.75 NA intron (NM_001354766, intron 9 of 13) intron (NM_001354766, intron 9 of 13) 61783 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 119.5-113 chr7 6324067 6324300 + 0.75 NA Intergenic Intergenic 24784 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 131.75-41 chr2 8529406 8529647 + 0.75 NA Intergenic L2|LINE|L2 54266 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 151.5-14 chr10 76779674 76779924 + 0.75 NA Intergenic Intergenic -108245 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 149.5-37 chr16 9485187 9485396 + 0.75 NA Intergenic Intergenic -29786 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 140-68 chr9 31816488 31816740 + 0.75 NA Intergenic Intergenic -435124 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 207.25-30 chr7 3453839 3454167 + 0.75 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 152751 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 129.25-45 chr2 139728348 139728680 + 0.75 NA Intergenic MER4-int|LTR|ERV1 831190 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 242.75-19 chr7 50868766 50869378 + 0.75 NA Intergenic Intergenic -75619 NM_001371008 170-47 chr6 65245303 65245669 + 0.75 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -55932 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 120-87 chr8 52485690 52485899 + 0.75 NA Intergenic Intergenic -75915 NM_001352834 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 132-61 chr5 128810557 128810768 + 0.75 NA Intergenic Intergenic -154465 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 227-8 chr12 12469179 12469576 + 0.75 NA 3' UTR (NM_001330356, exon 3 of 3) 3' UTR (NM_001330356, exon 3 of 3) 93486 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 138.5-49 chr18 6329548 6329732 + 0.75 NA intron (NM_001365765, intron 1 of 18) MSTC|LTR|ERVL-MaLR 29390 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 203.75-38 chr6 115885429 115885892 + 0.75 NA Intergenic Intergenic -153071 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 172.25-74 chr8 121279342 121279750 + 0.75 NA Intergenic Intergenic -359800 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 149-12 chr12 29110379 29110647 + 0.75 NA Intergenic L1M2|LINE|L1 -38765 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 150.25-40 chr2 125285723 125286155 + 0.75 NA Intergenic L3|LINE|CR1 832046 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 166.75-28 chr2 11920898 11921306 + 0.75 NA Intergenic Intergenic -84116 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 155.5-63 chr20 45114432 45114816 + 0.75 NA intron (NM_145652, intron 1 of 3) intron (NM_145652, intron 1 of 3) 550 NM_145652 149708 Hs.375031 NM_145652 ENSG00000175121 WFDC5 PRG5|WAP1|dJ211D12.5 WAP four-disulfide core domain 5 protein-coding 157.5-38 chr17 74810623 74811017 + 0.75 NA intron (NM_017728, intron 8 of 9) intron (NM_017728, intron 8 of 9) 34321 NM_017728 54868 Hs.370262 NM_017728 ENSG00000109066 TMEM104 - transmembrane protein 104 protein-coding 148.25-28 chr17 52239050 52239388 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -79202 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 170.75-77 chr9 31757718 31758238 + 0.75 NA Intergenic L1MA4A|LINE|L1 -376488 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 139.25-42 chr17 44942163 44942598 + 0.75 NA intron (NM_001265577, intron 1 of 15) intron (NM_001265577, intron 1 of 15) 5393 NM_001264573 146909 Hs.135094 NM_001080443 ENSG00000186185 KIF18B - kinesin family member 18B protein-coding 146.75-65 chr9 28775154 28775525 + 0.75 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -56034 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 154-45 chr3 6450484 6450752 + 0.75 NA Intergenic Intergenic 354831 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 122.5-7 chr1 215343341 215343601 + 0.75 NA Intergenic Intergenic -223833 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 149.25-54 chr5 163387949 163388254 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR -49470 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 125.75 chr1 4024839 4025063 + 0.75 NA Intergenic HAL1b|LINE|L1 -75971 NR_147024 105376672 Hs.435087 NR_147024 ENSG00000226374 LINC01345 - long intergenic non-protein coding RNA 1345 ncRNA 155.25-47 chr3 178964585 178964867 + 0.75 NA Intergenic MER21C|LTR|ERVL -104321 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 167.25-46 chr3 3353128 3353435 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -173564 NM_001173482 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 144.25-68 chr5 167220720 167221118 + 0.75 NA intron (NM_001122679, intron 1 of 29) AluSx1|SINE|Alu -52518 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 139-31 chr2 42640011 42640294 + 0.75 NA intron (NM_001330443, intron 4 of 16) intron (NM_001330443, intron 4 of 16) 71520 NM_001330442 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 130-38 chr2 115532856 115533213 + 0.75 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 189219 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 164-3 chr1 165602990 165603274 + 0.75 NA Intergenic AluJo|SINE|Alu -20977 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 235.75-15 chr21 23772359 23772863 + 0.75 NA Intergenic Intergenic -387776 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 172-24 chr2 126261066 126261494 + 0.75 NA Intergenic Intergenic -143295 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 161.75-44 chr5 112344105 112344443 + 0.75 NA intron (NM_001347887, intron 1 of 23) MER3|DNA|hAT-Charlie 75003 NM_001347888 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 116.5-129 chr9 92936166 92936512 + 0.75 NA Intergenic FLAM_C|SINE|Alu -11184 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 176.5-39 chr18 5272986 5273389 + 0.75 NA Intergenic L1MA2|LINE|L1 22539 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 121.5-28 chr13 50153323 50153543 + 0.75 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) -18585 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 136.25-9 chr10 77178119 77178435 + 0.75 NA intron (NM_001271519, intron 5 of 28) intron (NM_001271519, intron 5 of 28) 37446 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 130.5-109 chr9 37502001 37502244 + 0.75 NA intron (NM_001282766, intron 12 of 12) MIRc|SINE|MIR 16174 NM_022490 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 122.25-28 chr13 50780708 50780896 + 0.75 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -27053 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 154.75-26 chr2 32175472 32175822 + 0.75 NA intron (NM_001193515, intron 3 of 12) intron (NM_001193515, intron 3 of 12) 9783 NM_001193513 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 137-36 chr2 44552331 44552601 + 0.75 NA intron (NM_024766, intron 3 of 10) L3|LINE|CR1 190519 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 171.25-43 chr5 56553511 56553860 + 0.75 NA intron (NR_161255, intron 2 of 5) intron (NR_161255, intron 2 of 5) 52571 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 178.25-43 chr4 54634647 54635030 + 0.75 NA Intergenic Intergenic -23090 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 135-53 chr4 56611873 56612214 + 0.75 NA Intergenic MER89|LTR|ERV1 44479 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 118-42 chr22 39449410 39449578 + 0.75 NA Intergenic MIRb|SINE|MIR -7518 NM_002409 4248 Hs.276808 NM_002409 ENSG00000128268 MGAT3 GNT-III|GNT3 mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase protein-coding 133.25-85 chr8 132543540 132543764 + 0.75 NA Intergenic L2a|LINE|L2 17827 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 169.5-15 chr11 108722509 108722840 + 0.75 NA intron (NM_004398, intron 12 of 17) MIRc|SINE|MIR 57605 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 146-48 chr5 125663155 125663413 + 0.75 NA Intergenic HERVFH19-int|LTR|ERV1 170023 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 113.75-26 chr11 79529198 79529448 + 0.75 NA Intergenic Intergenic -88293 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 159.25-37 chr2 83467535 83467747 + 0.75 NA Intergenic L2a|LINE|L2 -55173 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 137.5-25 chr12 104359437 104359776 + 0.75 NA Intergenic Intergenic 55867 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 139.75-70 chr8 79604228 79604475 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6766 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 170.5-55 chr5 7687624 7687878 + 0.75 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 163382 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 178.5-34 chr2 194567300 194567630 + 0.75 NA Intergenic Intergenic -163130 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 174.75-12 chr12 5653807 5654194 + 0.75 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 159868 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 138.5-30 chr13 104898436 104898739 + 0.75 NA Intergenic Intergenic -567280 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 125.25-15 chr11 33329660 33329994 + 0.75 NA intron (NM_001278162, intron 3 of 15) intron (NM_001278162, intron 3 of 15) -46281 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 210.5-48 chr4 177407135 177407636 + 0.75 NA Intergenic Intergenic 35052 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 130.25-6 chr1 174072118 174072349 + 0.75 NA Intergenic Intergenic -79161 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 121.75-87 chr8 11719532 11719862 + 0.75 NA intron (NM_002052, intron 2 of 6) intron (NM_002052, intron 2 of 6) 11841 NM_001308093 2626 Hs.243987 NM_002052 ENSG00000136574 GATA4 ASD2|TACHD|TOF|VSD1 GATA binding protein 4 protein-coding 152.25-57 chr6 63450763 63451155 + 0.75 NA Intergenic AluSx3|SINE|Alu -121053 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 146.5-89 chr8 81126587 81126826 + 0.75 NA Intergenic Intergenic -14638 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 136.75-82 chr5 95971812 95972028 + 0.75 NA intron (NR_130776, intron 1 of 4) L1ME1|LINE|L1 9919 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 155-42 chr5 18930891 18931246 + 0.75 NA Intergenic L1MB7|LINE|L1 955204 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 131.5-21 chr12 67804207 67804417 + 0.75 NA Intergenic Intergenic -74837 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 124.25-5 chr1 107110606 107110903 + 0.75 NA Intergenic Intergenic -29334 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 142.75-6 chr1 157752803 157753237 + 0.75 NA intron (NM_001159488, intron 7 of 8) intron (NM_001159488, intron 7 of 8) 24112 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 192-38 chr4 79766773 79767162 + 0.75 NA Intergenic Intergenic -60504 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 143.5-41 chr18 57349319 57349628 + 0.75 NA Intergenic Intergenic -3084 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 116-21 chr14 69480036 69480324 + 0.75 NA Intergenic Intergenic -4548 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 168-44 chr2 197703591 197704074 + 0.75 NA Intergenic Intergenic -1537 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 191.75-8 chr13 41964402 41964799 + 0.75 NA intron (NR_039974, intron 1 of 3) MER5A|DNA|hAT-Charlie 3431 NR_039974 100507240 Hs.147766 NR_039974 ENSG00000278338 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 167.25-34 chr2 17112368 17112686 + 0.75 NA Intergenic Intergenic 405913 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 146-15 chr14 20026343 20026575 + 0.75 NA Intergenic L1PA6|LINE|L1 8299 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 132.75-92 chr7 69467636 69467868 + 0.75 NA Intergenic MER21C|LTR|ERVL 129872 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 215.75-11 chr2 50575827 50576219 + 0.75 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 120239 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 135.75-106 chr8 126652491 126652867 + 0.75 NA Intergenic Intergenic -94201 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 120.75-46 chr2 48194440 48194639 + 0.75 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -120143 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 132.5-74 chr3 83224894 83225145 + 0.75 NA Intergenic Intergenic 1238877 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 155.5-82 chr5 123389724 123390078 + 0.75 NA intron (NM_153223, intron 9 of 20) intron (NM_153223, intron 9 of 20) 33691 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 179-9 chr10 86522773 86523205 + 0.75 NA Intergenic Intergenic -1197 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 163.75-31 chr2 112531138 112531483 + 0.75 NA 3' UTR (NM_153712, exon 7 of 7) 3' UTR (NM_153712, exon 7 of 7) -10605 NM_001282776 84172 Hs.745127 NM_019014 ENSG00000125630 POLR1B RPA135|RPA2|Rpo1-2 RNA polymerase I subunit B protein-coding 184.75-19 chr13 94300374 94300744 + 0.75 NA intron (NM_005708, intron 5 of 8) intron (NM_005708, intron 5 of 8) -112568 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 195-17 chr14 53030904 53031381 + 0.75 NA Intergenic L1ME4b|LINE|L1 -80045 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 120-77 chr6 14400398 14400795 + 0.75 NA Intergenic MIRb|SINE|MIR -115142 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 113.25-8 chr1 171343262 171343507 + 0.75 NA Intergenic LTR33|LTR|ERVL 4488 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 154-53 chr5 15835094 15835390 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -99940 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 115.75-61 chr3 94969648 94969967 + 0.75 NA intron (NR_015400, intron 2 of 7) intron (NR_015400, intron 2 of 7) 31544 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 148.25-38 chr2 169285370 169285802 + 0.75 NA intron (NM_004525, intron 9 of 78) intron (NM_004525, intron 9 of 78) 76948 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 117-26 chr17 63801936 63802268 + 0.75 NA intron (NM_203499, intron 6 of 17) Charlie1a|DNA|hAT-Charlie -25329 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 135.75-51 chr2 126230487 126230787 + 0.75 NA Intergenic Intergenic -112652 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 116.5-127 chr9 72019001 72019252 + 0.75 NA Intergenic L1MEd|LINE|L1 41479 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 179.5-53 chr2 29814033 29814305 + 0.75 NA intron (NM_004304, intron 1 of 28) MIR|SINE|MIR 107417 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 160.5-45 chr22 44812684 44812938 + 0.75 NA intron (NM_001017526, intron 5 of 12) L1MC4|LINE|L1 60253 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 115.75-38 chr18 2724589 2724794 + 0.75 NA intron (NM_015295, intron 20 of 47) intron (NM_015295, intron 20 of 47) 68804 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 132.5-96 chr5 165030024 165030284 + 0.75 NA Intergenic Intergenic 559875 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 170.75-58 chr5 94582387 94582693 + 0.75 NA 5' UTR (NM_173665, exon 2 of 5) 5' UTR (NM_173665, exon 2 of 5) 36064 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 141.5-49 chr18 22565840 22566245 + 0.75 NA Intergenic Intergenic -148127 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 112.75-9 chr10 18393712 18393917 + 0.75 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -6761 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 133.5-74 chr4 30309358 30309566 + 0.75 NA Intergenic Intergenic -410907 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 171.75-44 chr5 102762595 102762842 + 0.75 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) 7413 NM_001364589 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 123-41 chr4 74136712 74136925 + 0.75 NA intron (NM_001351311, intron 2 of 7) L1MA4|LINE|L1 13545 NM_001351310 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 115.5-58 chr3 33112071 33112438 + 0.75 NA Intergenic L1MC1|LINE|L1 -1704 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 135.75-103 chr8 115074443 115074768 + 0.75 NA Intergenic Intergenic 593408 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 144.5-107 chr8 118603852 118604356 + 0.75 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -16897 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 130.75-53 chr3 145666719 145666997 + 0.75 NA Intergenic Intergenic 402327 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 137-25 chr14 73479869 73480116 + 0.75 NA intron (NM_001220484, intron 17 of 17) Charlie2a|DNA|hAT-Charlie -10941 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 169.25-22 chr17 73077239 73077562 + 0.75 NA intron (NM_001352692, intron 3 of 9) AluSp|SINE|Alu 15288 NM_001352693 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 113.75-117 chr9 96370151 96370366 + 0.75 NA intron (NR_104627, intron 1 of 12) LTR16A|LTR|ERVL 13452 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 133.75-43 chr2 78043181 78043448 + 0.75 NA intron (NR_110288, intron 1 of 3) A-rich|Low_complexity|Low_complexity -45416 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 113 chr1 23680888 23681101 + 0.75 NA Intergenic AluSx1|SINE|Alu -10785 NM_001199802 6135 Hs.719951 NM_000975 ENSG00000142676 RPL11 DBA7|GIG34|L11|uL5 ribosomal protein L11 protein-coding 119.5-42 chr15 85093626 85093905 + 0.75 NA intron (NM_001243137, intron 8 of 21) intron (NM_001243137, intron 8 of 21) 111791 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 172.5-5 chr10 74085153 74085539 + 0.75 NA intron (NM_014000, intron 8 of 21) intron (NM_014000, intron 8 of 21) 65482 NM_001320265 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 176.5-37 chr17 49830220 49830614 + 0.75 NA 3' UTR (NM_001199158, exon 12 of 12) 3' UTR (NM_001199158, exon 12 of 12) -15493 NM_001242791 729220 Hs.434138 NM_001242791 FLJ45513 - uncharacterized LOC729220 protein-coding 176.25-75 chrX 68747198 68747502 + 0.75 NA Intergenic Intergenic 53711 NM_001142504 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 116-47 chr4 18034198 18034459 + 0.75 NA Intergenic Intergenic -12453 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 168.75-13 chr15 25587485 25587885 + 0.75 NA Intergenic L1MD2|LINE|L1 -148629 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 116-27 chr16 56198514 56198701 + 0.75 NA intron (NM_138736, intron 2 of 7) MIR|SINE|MIR -4082 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 214.5-20 chr18 3793685 3794182 + 0.75 NA intron (NM_001242762, intron 2 of 9) L2a|LINE|L2 51425 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 194.5-65 chr6 144209387 144209816 + 0.75 NA Intergenic L1PREC2|LINE|L1 59084 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 181.5-74 chr8 89307351 89307656 + 0.75 NA Intergenic Intergenic 450208 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 174.75-29 chr2 121827575 121827969 + 0.75 NA Intergenic AluSx1|SINE|Alu 72121 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 127-82 chr6 52023314 52023565 + 0.75 NA intron (NM_138694, intron 32 of 66) L1ME3G|LINE|L1 64174 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 113.25-56 chr18 14925969 14926142 + 0.75 NA Intergenic Intergenic -20212 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 163.25-61 chr5 178948098 178948492 + 0.75 NA intron (NM_001178089, intron 4 of 4) intron (NM_001178089, intron 4 of 4) 7097 NM_182594 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 166.5-94 chr7 50914203 50914689 + 0.75 NA Intergenic Intergenic -120993 NM_001371008 124.5-90 chr6 72445631 72445878 + 0.75 NA Intergenic L1PA16|LINE|L1 79008 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 181-47 chr8 123581878 123582318 + 0.75 NA Intergenic AluSz6|SINE|Alu -40892 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 163.75-15 chr11 111453107 111453484 + 0.75 NA Intergenic Intergenic -35109 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 171-28 chr2 29806678 29806972 + 0.75 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 114761 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 169.5-42 chr2 77702454 77702759 + 0.75 NA Intergenic L1PA16|LINE|L1 -180173 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 144.5-101 chr7 8017658 8017877 + 0.75 NA intron (NM_138426, intron 2 of 7) intron (NM_138426, intron 2 of 7) 48971 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 117.25-90 chr8 67388054 67388392 + 0.75 NA intron (NR_136224, intron 1 of 4) intron (NR_136224, intron 1 of 4) 44389 NR_136223 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 179.75-21 chr17 29799840 29800254 + 0.75 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -38615 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 216-16 chr15 93010405 93010925 + 0.75 NA intron (NM_001271, intron 35 of 38) AluSx1|SINE|Alu 62491 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 113.75-101 chr7 108301702 108301938 + 0.75 NA intron (NM_001371126, intron 3 of 32) intron (NM_001371126, intron 3 of 32) 26706 NM_001371178 129.5-22 chr12 18720728 18721057 + 0.75 NA intron (NM_033123, intron 4 of 14) L1ME4a|LINE|L1 16617 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 146.75-41 chr4 179964131 179964363 + 0.75 NA Intergenic Intergenic 1194902 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 132-74 chr8 69544600 69544906 + 0.75 NA intron (NR_156414, intron 2 of 20) intron (NR_156414, intron 2 of 20) -48147 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 154.25-65 chr8 107509680 107510056 + 0.75 NA Intergenic L1MD2|LINE|L1 -11950 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 167.5-80 chr7 72116842 72117396 + 0.75 NA intron (NM_001363460, intron 2 of 5) AluJr|SINE|Alu 220272 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 125.25-78 chr6 161617846 161618103 + 0.75 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 146997 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 126.25-66 chr4 127665567 127665766 + 0.75 NA intron (NM_015693, intron 4 of 15) MLT1J2|LTR|ERVL-MaLR 32709 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 144.5-30 chr12 112329825 112330104 + 0.75 NA intron (NM_001109662, intron 1 of 75) intron (NM_001109662, intron 1 of 75) 52467 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 128.25-55 chr4 55251339 55251703 + 0.75 NA Intergenic Intergenic -94721 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 287-11 chr20 56365533 56366264 + 0.75 NA intron (NM_080821, intron 2 of 2) AluJr|SINE|Alu 6924 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 166-53 chr7 6259113 6259524 + 0.75 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 13306 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 195.25-6 chr10 15529821 15530145 + 0.75 NA intron (NM_001291494, intron 27 of 28) intron (NM_001291494, intron 27 of 28) -158694 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 215-41 chr8 81361996 81362442 + 0.75 NA Intergenic Intergenic 81683 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 201.25-24 chr3 70740731 70741140 + 0.75 NA Intergenic Intergenic 323989 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 191.25-36 chr2 203833304 203833751 + 0.75 NA Intergenic Intergenic -34244 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 241.5-39 chr8 107087749 107088173 + 0.75 NA Intergenic Intergenic 248554 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 126.25-11 chr10 23456177 23456386 + 0.75 NA Intergenic MER57B2|LTR|ERV1 17012 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 132.25-54 chr21 27206542 27206752 + 0.75 NA Intergenic LTR16A2|LTR|ERVL -239559 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 124.25-71 chr6 64340619 64340977 + 0.75 NA intron (NM_001292009, intron 29 of 43) L1PA16|LINE|L1 533962 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 116.75-63 chr5 121431168 121431352 + 0.75 NA Intergenic Intergenic 108710 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 190-4 chr10 41896924 41897299 + 0.75 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 470934 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 160-8 chr12 46967963 46968215 + 0.75 NA Intergenic L1PB4|LINE|L1 -111514 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 160-17 chr2 67503181 67503483 + 0.75 NA Intergenic Intergenic 105999 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 113-56 chr20 56476113 56476359 + 0.75 NA intron (NM_001283036, intron 3 of 8) intron (NM_001283036, intron 3 of 8) 7651 NM_001283037 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 172.75-36 chr6 133254252 133254593 + 0.75 NA intron (NM_172103, intron 1 of 18) intron (NM_172103, intron 1 of 18) 12923 NM_001301012 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 179.5-6 chr1 58878729 58878994 + 0.75 NA intron (NR_108106, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 93710 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 123-53 chr6 63351024 63351294 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -31176 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 164-29 chr2 59075642 59076032 + 0.75 NA Intergenic Intergenic -141871 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 175-10 chr11 105608018 105608290 + 0.75 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -1919 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 141.75-29 chr16 51508721 51509148 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -253585 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 119.25-44 chr2 15708900 15709256 + 0.75 NA intron (NR_110201, intron 4 of 5) intron (NR_110201, intron 4 of 5) 18296 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 241.5-23 chr21 27757940 27758291 + 0.75 NA Intergenic LTR37-int|LTR|ERV1 35736 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 117.5-73 chr4 180085303 180085542 + 0.75 NA Intergenic Intergenic 1073727 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 129.25-18 chr12 12751840 12752137 + 0.75 NA intron (NM_001130415, intron 1 of 1) MLT1D|LTR|ERVL-MaLR -12661 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 139.5-37 chr2 4424347 4424561 + 0.75 NA Intergenic MER44C|DNA|TcMar-Tigger 231768 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 166-61 chr8 113005299 113005595 + 0.75 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 361954 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 227.5-48 chr7 25484680 25485103 + 0.75 NA Intergenic Intergenic 178249 NR_157826 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 174-22 chr17 54946551 54946816 + 0.75 NA intron (NM_001321176, intron 12 of 16) L1MD2|LINE|L1 21971 NR_027941 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 214-6 chr10 117683223 117683605 + 0.75 NA Intergenic Intergenic -138346 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 126.25-41 chr2 40736182 40736542 + 0.75 NA Intergenic Intergenic -223927 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 162.5-89 chr8 78258847 78259238 + 0.75 NA Intergenic Intergenic -257298 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 157.5-72 chr3 190794834 190795269 + 0.75 NA Intergenic Intergenic 67643 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 140.5-56 chr21 14819128 14819462 + 0.75 NA non-coding (NR_146322, exon 4 of 4) non-coding (NR_146322, exon 4 of 4) 99373 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 173.75-4 chr1 175590149 175590442 + 0.75 NA intron (NM_003285, intron 1 of 22) L1MA9|LINE|L1 153300 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 173.25-68 chr8 129452645 129452935 + 0.75 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 31352 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 173.75-17 chr17 58900984 58901308 + 0.75 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 145277 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 144-6 chr10 4919720 4919955 + 0.75 NA Intergenic L1M4c|LINE|L1 -3564 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 128.5-30 chr16 56679094 56679454 + 0.75 NA Intergenic MIRb|SINE|MIR 3158 NR_003669 644314 Hs.434199 NM_175621 MT1IP MT1|MT1I|MTE metallothionein 1I, pseudogene pseudo 180.75-16 chr11 128385214 128385679 + 0.75 NA Intergenic MLT2A1|LTR|ERVL 136864 NM_005238 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 127.25-24 chr12 129103589 129103794 + 0.75 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -5999 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 204.25-47 chr6 161910220 161910655 + 0.75 NA intron (NM_004562, intron 6 of 11) AluSx1|SINE|Alu 439460 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 119-12 chr12 26019285 26019548 + 0.75 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -33148 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 129.75-70 chr6 12488442 12488710 + 0.75 NA Intergenic Intergenic 96828 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 118-10 chr10 52958478 52958765 + 0.75 NA Intergenic MIRb|SINE|MIR -186921 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 214.75-9 chr13 113250602 113251145 + 0.75 NA intron (NM_001008895, intron 15 of 19) intron (NM_001008895, intron 15 of 19) -12047 NR_107042 102465874 NR_107042 ENSG00000277942 MIR8075 hsa-mir-8075 microRNA 8075 ncRNA 114-53 chr20 3725784 3725980 + 0.75 NA Intergenic AluJo|SINE|Alu -6803 NM_001318322 116835 Hs.516854 NM_052970 ENSG00000132622 HSPA12B C20orf60 heat shock protein family A (Hsp70) member 12B protein-coding 178-34 chr3 98159181 98159682 + 0.75 NA Intergenic L1PA16|LINE|L1 -9269 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 151-28 chr18 36202721 36202967 + 0.75 NA intron (NM_017947, intron 4 of 14) THE1D|LTR|ERVL-MaLR 15347 NM_017947 55034 Hs.405028 NM_017947 ENSG00000075643 MOCOS HMCS|MCS|MOS molybdenum cofactor sulfurase protein-coding 167.75-24 chr14 74999732 75000084 + 0.75 NA Intergenic AluY|SINE|Alu -3013 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 129-56 chr5 38800772 38800998 + 0.75 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 44944 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 147-53 chr3 8983865 8984204 + 0.75 NA 3' UTR (NM_001033117, exon 22 of 22) 3' UTR (NM_001033117, exon 22 of 22) -20562 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 123-60 chr7 6679354 6679739 + 0.75 NA Intergenic Intergenic 27401 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 198.25-47 chr9 301391 301715 + 0.75 NA intron (NM_001193536, intron 3 of 46) L1PA16|LINE|L1 28505 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 168.5-64 chr6 43951579 43951978 + 0.75 NA Intergenic MIRb|SINE|MIR -48807 NR_160954 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 119.75-36 chr17 31055720 31055899 + 0.75 NA intron (NR_146737, intron 2 of 6) intron (NR_146737, intron 2 of 6) 3300 NR_146737 646030 NR_146737 LOC646030 - leucine rich repeat containing 37B pseudogene pseudo 204.75-28 chr2 191381639 191382104 + 0.75 NA intron (NM_012223, intron 14 of 28) L1ME1|LINE|L1 136467 NM_001161819 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 151-32 chr18 77461196 77461567 + 0.75 NA Intergenic L1MCa|LINE|L1 211533 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 190-36 chr3 74950948 74951291 + 0.75 NA Intergenic Intergenic -263357 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 244.75-25 chr7 4388837 4389229 + 0.75 NA Intergenic L1PA10|LINE|L1 -254196 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 127.5-80 chr3 56662507 56662753 + 0.75 NA intron (NM_001365638, intron 8 of 22) intron (NM_001365638, intron 8 of 22) 1416 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 117.25-52 chr22 26833193 26833453 + 0.75 NA Intergenic Intergenic -26888 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 113-28 chr14 75370256 75370527 + 0.75 NA Intergenic MLT2F|LTR|ERVL -57333 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 119.5-109 chr6 159393280 159393496 + 0.75 NA intron (NR_125873, intron 2 of 2) intron (NR_125873, intron 2 of 2) 9857 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 167-3 chr1 241023291 241023656 + 0.75 NA intron (NM_001350116, intron 3 of 16) MER67C|LTR|ERV1 -108799 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 172.25-50 chr3 112477463 112477838 + 0.75 NA intron (NM_181780, intron 2 of 4) L1MB5|LINE|L1 21822 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 170.25-17 chr14 23459653 23459921 + 0.75 NA Intergenic L1MB8|LINE|L1 -9916 NM_015514 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 235-11 chr14 19886852 19887252 + 0.75 NA Intergenic L1PB4|LINE|L1 10784 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 119.75-69 chr5 57570317 57570591 + 0.75 NA intron (NR_120607, intron 1 of 5) intron (NR_120607, intron 1 of 5) 112 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 171-3 chr1 40902047 40902458 + 0.75 NA Intergenic LTR50|LTR|ERVL -39889 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 133.25-58 chr3 153357608 153358018 + 0.75 NA Intergenic Intergenic -126682 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 128.5-36 chr18 10034629 10034939 + 0.75 NA Intergenic L1ME4a|LINE|L1 120768 NM_194434 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 208.75-20 chr3 41604802 41605300 + 0.75 NA intron (NR_136342, intron 29 of 34) LTR102_Mam|LTR|ERVL 357052 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 168-51 chr4 70577057 70577403 + 0.75 NA Intergenic MER103C|DNA|hAT-Charlie -15026 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 139.75-17 chr12 13823431 13823827 + 0.75 NA intron (NM_000834, intron 2 of 12) L1MEc|LINE|L1 156727 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 134.5-18 chr11 104720560 104720878 + 0.75 NA Intergenic Intergenic -111417 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 128.25-51 chr4 33384366 33384628 + 0.75 NA Intergenic L1PB4|LINE|L1 655396 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 164.75-30 chr18 45207978 45208279 + 0.75 NA intron (NM_001371319, intron 3 of 23) intron (NM_001371319, intron 3 of 23) -4867 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 187.5-28 chr17 76267574 76267899 + 0.75 NA intron (NM_182565, intron 2 of 2) AluSp|SINE|Alu 2388 NM_182565 283991 Hs.744981 NM_182565 ENSG00000185262 UBALD2 FAM100B UBA like domain containing 2 protein-coding 231-5 chr10 19932055 19932411 + 0.75 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 115801 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 138.75-23 chr14 85518867 85519086 + 0.75 NA Intergenic AluSx|SINE|Alu -11049 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 133.75-63 chr5 12413196 12413463 + 0.75 NA Intergenic L1MA2|LINE|L1 -161528 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 272-19 chr4 32287493 32287979 + 0.75 NA Intergenic MIR|SINE|MIR -63302 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 240.75 chr1 70168434 70168949 + 0.75 NA intron (NM_017768, intron 9 of 14) L1M4b|LINE|L1 36888 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 183-59 chr5 125470305 125470629 + 0.75 NA Intergenic Intergenic -22794 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 129.25-79 chr9 5218207 5218417 + 0.75 NA Intergenic Intergenic -13107 NM_002195 3641 Hs.418506 NM_002195 ENSG00000120211 INSL4 EPIL|PLACENTIN insulin like 4 protein-coding 171.25-18 chr14 85456311 85456770 + 0.75 NA Intergenic Intergenic 62625 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 127.5-62 chr2 81771975 81772188 + 0.75 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -305135 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 140.25-35 chr2 32929689 32930021 + 0.75 NA TTS (NR_027098) TTS (NR_027098) 2728 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 165.25-44 chr4 185594128 185594473 + 0.75 NA intron (NM_001145672, intron 18 of 20) intron (NM_001145672, intron 18 of 20) -58742 NR_047562 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 153.5-54 chr21 30128189 30128509 + 0.75 NA Intergenic AluSx3|SINE|Alu 38456 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 132-50 chr3 136577345 136577543 + 0.75 NA intron (NM_005862, intron 4 of 33) ERVL-E-int|LTR|ERVL 174934 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 167.25-19 chr11 37830977 37831397 + 0.75 NA Intergenic Intergenic -107414 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 186.75-23 chr17 79258712 79259165 + 0.75 NA intron (NM_001082575, intron 3 of 14) intron (NM_001082575, intron 3 of 14) 184001 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 122.5-104 chr9 86253507 86253706 + 0.75 NA intron (NM_001276367, intron 1 of 4) FRAM|SINE|Alu 2427 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 125.5-8 chr1 217668798 217669008 + 0.75 NA intron (NM_138796, intron 3 of 10) intron (NM_138796, intron 3 of 10) 37559 NM_138796 128153 Hs.171130 NM_138796 ENSG00000162814 SPATA17 IQCH|MSRG-11|MSRG11 spermatogenesis associated 17 protein-coding 122.25-48 chr2 50208830 50209186 + 0.75 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 138746 NM_001330092 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 156.5-65 chr5 146632608 146632888 + 0.75 NA intron (NM_181678, intron 8 of 10) L2c|LINE|L2 -116635 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 130.75-29 chr17 61214893 61215266 + 0.75 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 152625 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 153.5-28 chr12 77315478 77315750 + 0.75 NA Intergenic Intergenic -250045 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 117.75-68 chr5 86902021 86902384 + 0.75 NA Intergenic L2|LINE|L2 155384 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 115.25-64 chr3 143376259 143376469 + 0.75 NA intron (NM_173653, intron 13 of 15) MIRb|SINE|MIR 34118 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 116.25-47 chr2 79745525 79745817 + 0.75 NA intron (NM_001282598, intron 3 of 17) L1MB2|LINE|L1 -96312 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 140.25-33 chr2 28441759 28442080 + 0.75 NA Intergenic L1ME2|LINE|L1 -47247 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 157.5-59 chr20 54394709 54395038 + 0.75 NA Intergenic L1ME2|LINE|L1 -80720 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 136-56 chr5 2953031 2953364 + 0.75 NA Intergenic L1MA5|LINE|L1 35343 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 139.5-23 chr12 64887193 64887484 + 0.75 NA intron (NR_033988, intron 1 of 2) intron (NR_033988, intron 1 of 2) 3564 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 189.25-5 chr1 181928325 181928790 + 0.75 NA Intergenic Intergenic 133155 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 188-28 chr4 86944071 86944435 + 0.75 NA intron (NM_001166693, intron 1 of 20) MIRb|SINE|MIR 9251 NM_001166693 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 120.25-11 chr10 66238821 66239250 + 0.75 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 667610 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 146.25-72 chr8 80303089 80303491 + 0.75 NA Intergenic L1ME4b|LINE|L1 61901 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 144.25-8 chr10 18675527 18675837 + 0.75 NA 3' UTR (NM_178815, exon 6 of 6) 3' UTR (NM_178815, exon 6 of 6) 16251 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 146.5-21 chr12 41279166 41279473 + 0.75 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 90999 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 131.25-6 chr1 93231342 93231573 + 0.75 NA intron (NM_001306076, intron 17 of 28) intron (NM_001306076, intron 17 of 28) 50741 NM_001306076 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 132.5-19 chr12 52448042 52448271 + 0.75 NA intron (NM_005555, intron 6 of 8) intron (NM_005555, intron 6 of 8) 3990 NM_005555 3854 Hs.708950 NM_005555 ENSG00000185479 KRT6B CK-6B|CK6B|K6B|KRTL1|PC2|PC4 keratin 6B protein-coding 138.5-94 chr7 8513952 8514147 + 0.75 NA intron (NM_152745, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 80440 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 141.25-50 chr20 55867942 55868295 + 0.75 NA Intergenic L1PA16|LINE|L1 137401 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 168-30 chr15 99273486 99273811 + 0.75 NA intron (NR_135755, intron 2 of 8) intron (NR_135755, intron 2 of 8) 16123 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 193.25-20 chr21 30327772 30328261 + 0.75 NA Intergenic LTR40b|LTR|ERVL -7701 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 267.25-6 chr17 67209382 67209815 + 0.75 NA intron (NM_001330447, intron 5 of 32) AluSx1|SINE|Alu -35178 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 116-68 chr7 81912486 81912797 + 0.75 NA Intergenic L1M3c|LINE|L1 -96536 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 142.25-12 chr11 80051368 80051675 + 0.75 NA Intergenic MIR|SINE|MIR -610491 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 120.25-9 chr10 60840211 60840438 + 0.75 NA Intergenic Zaphod|DNA|hAT-Tip100 61846 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 118-54 chr5 26734162 26734391 + 0.75 NA Intergenic Intergenic 304310 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 219.5-25 chr2 44158397 44159033 + 0.75 NA Intergenic AluSx|SINE|Alu -10088 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 137.5-77 chr3 83544047 83544339 + 0.75 NA Intergenic L1MA6|LINE|L1 1325382 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 202.25 chr1 19675063 19675381 + 0.75 NA intron (NM_000871, intron 1 of 2) MIRb|SINE|MIR 10347 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 135.25-28 chr14 63427618 63427964 + 0.75 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 80447 NM_001282181 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 115.5-32 chr16 67060029 67060230 + 0.75 NA intron (NM_001368708, intron 3 of 4) AluJr|SINE|Alu 30980 NM_022845 865 Hs.460988 NM_001755 ENSG00000067955 CBFB PEBP2B core-binding factor subunit beta protein-coding 143-68 chr7 10989205 10989430 + 0.75 NA intron (NM_001007157, intron 3 of 17) intron (NM_001007157, intron 3 of 17) 15445 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 175.75-29 chr3 73927988 73928421 + 0.75 NA Intergenic Intergenic 118960 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 194.25-48 chr8 99447358 99447787 + 0.75 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 89158 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 166-28 chr18 2558345 2558696 + 0.75 NA intron (NM_022840, intron 3 of 8) L1MEc|LINE|L1 12985 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 159.75-22 chr15 72363781 72364104 + 0.75 NA intron (NM_001318825, intron 1 of 13) L1ME3G|LINE|L1 12072 NR_134869 3073 Hs.604479 NM_000520 ENSG00000213614 HEXA TSD hexosaminidase subunit alpha protein-coding 162.75-14 chr12 45264454 45264692 + 0.75 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) -28117 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 129-54 chr5 27911084 27911389 + 0.75 NA Intergenic Intergenic 376429 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 222.25-19 chr2 229462582 229462987 + 0.75 NA intron (NM_139072, intron 7 of 12) L2b|LINE|L2 -191497 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 159.5-56 chr3 57738549 57738794 + 0.75 NA Intergenic Intergenic -18585 NM_007159 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 120.75-81 chr5 150974418 150974629 + 0.75 NA Intergenic L1MC5|LINE|L1 -27939 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 113.75-46 chr18 1894889 1895131 + 0.75 NA Intergenic Intergenic -535381 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 114.25-117 chrX 147948011 147948249 + 0.75 NA intron (NR_033700, intron 14 of 14) intron (NR_033700, intron 14 of 14) -33207 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 186.75-7 chr12 84558080 84558403 + 0.75 NA Intergenic L1MEf|LINE|L1 354558 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 121-43 chr3 97536894 97537113 + 0.75 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 97396 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 191.75-22 chr2 96757067 96757444 + 0.75 NA Intergenic Intergenic -3647 NM_020184 26504 Hs.175043 NM_020184 ENSG00000158158 CNNM4 ACDP4 cyclin and CBS domain divalent metal cation transport mediator 4 protein-coding 231.25-18 chr19 2061390 2061755 + 0.75 NA Intergenic CpG -10328 NM_199054 2872 Hs.515032 NM_017572 ENSG00000099875 MKNK2 GPRK7|MNK2 MAPK interacting serine/threonine kinase 2 protein-coding 121.5-13 chr10 55541910 55542107 + 0.75 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -57034 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 120.25-73 chr8 119048803 119049063 + 0.75 NA intron (NM_001324095, intron 3 of 7) L1P4a|LINE|L1 -18314 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 201-6 chr10 43780193 43780497 + 0.75 NA Intergenic Intergenic -1443 NR_134483 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 161.25-64 chr5 99949103 99949445 + 0.75 NA Intergenic Intergenic 415284 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 138.75-15 chr14 45779987 45780184 + 0.75 NA Intergenic L1PA14|LINE|L1 -64483 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 210.25-50 chr8 120172916 120173322 + 0.75 NA intron (NM_021110, intron 5 of 47) L1MC4|LINE|L1 48017 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 212-35 chr5 19737311 19737781 + 0.75 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 148726 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 215.75-20 chr5 21180331 21180925 + 0.75 NA Intergenic Intergenic -278852 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 169.75-7 chr10 95747163 95747510 + 0.75 NA intron (NM_001098175, intron 1 of 9) intron (NM_001098175, intron 1 of 9) -8316 NM_001312654 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 188.75-43 chr6 156235536 156235895 + 0.75 NA Intergenic L1MEi|LINE|L1 -143035 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 195.75-46 chr5 158390655 158390987 + 0.75 NA intron (NR_109888, intron 1 of 6) intron (NR_109888, intron 1 of 6) 18952 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 116.25-89 chr8 22154825 22155028 + 0.75 NA intron (NM_139278, intron 2 of 7) (TCTCCC)n|Simple_repeat|Simple_repeat 1880 NM_139278 203190 Hs.33470 NM_139278 ENSG00000168481 LGI3 LGIL4 leucine rich repeat LGI family member 3 protein-coding 153.75-91 chr9 95612356 95612612 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR -95427 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 148-25 chr14 89790750 89791023 + 0.75 NA Intergenic MARNA|DNA|TcMar-Mariner 163650 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 144-51 chr4 61444098 61444391 + 0.75 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 242072 NM_001371342 129-31 chr17 79379404 79379666 + 0.75 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 136613 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 142.25-23 chr14 65170404 65170726 + 0.75 NA Intergenic Intergenic 51782 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 138.25-39 chr2 29308829 29309026 + 0.75 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -85027 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 175-38 chr22 27381548 27381821 + 0.75 NA Intergenic Intergenic 71033 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 114-83 chr7 11163966 11164259 + 0.75 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 190240 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 189-56 chrX 28932916 28933229 + 0.75 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) 345626 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 130.25-39 chr17 75935023 75935257 + 0.75 NA intron (NM_001319193, intron 3 of 28) L1MB7|LINE|L1 3092 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 133.75-81 chr9 91495834 91496086 + 0.75 NA Intergenic Intergenic -71334 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 121.5-83 chr3 150346867 150347258 + 0.75 NA Intergenic Intergenic -23315 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 202.75-13 chr2 49069332 49069744 + 0.75 NA intron (NM_000145, intron 1 of 9) L2a|LINE|L2 9935 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 178-44 chr5 124523815 124524325 + 0.75 NA Intergenic Intergenic -85550 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 139-47 chr3 48633387 48633796 + 0.75 NA TTS (NR_106882) TTS (NR_106882) 107 NR_106882 102465495 NR_106882 ENSG00000284364 MIR6824 hsa-mir-6824 microRNA 6824 ncRNA 204.25-12 chr12 1276144 1276608 + 0.75 NA intron (NR_027948, intron 14 of 19) AluSx1|SINE|Alu -224115 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 126-51 chr2 203665004 203665179 + 0.75 NA Intergenic Intergenic -41384 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 235.25-6 chr12 27791391 27791847 + 0.75 NA intron (NM_020782, intron 1 of 2) intron (NM_020782, intron 1 of 2) 11386 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 120.75-95 chr8 86853426 86853610 + 0.75 NA Intergenic Intergenic -12897 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 128.5-53 chr22 27112254 27112519 + 0.75 NA Intergenic Intergenic -51868 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 128-49 chr4 119922849 119923019 + 0.75 NA Intergenic Intergenic -16606 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 173.5-38 chr2 12151428 12151698 + 0.75 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -47567 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 165-55 chr8 144497421 144497762 + 0.75 NA intron (NM_001329444, intron 3 of 11) intron (NM_001329444, intron 3 of 11) -6549 NM_005309 2875 Hs.103502 NM_005309 ENSG00000167701 GPT AAT1|ALT1|GPT1 glutamic--pyruvic transaminase protein-coding 129.25-67 chr6 130945171 130945422 + 0.75 NA intron (NR_146620, intron 1 of 12) intron (NR_146620, intron 1 of 12) 25187 NM_001350306 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 167.75-32 chr2 36814336 36814690 + 0.75 NA 3' UTR (NM_001177970, exon 14 of 14) 3' UTR (NM_001177970, exon 14 of 14) 117806 NM_053276 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 166-2 chr1 56268294 56268544 + 0.75 NA Intergenic L2c|LINE|L2 -146544 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 134.25-99 chr9 87871504 87871779 + 0.75 NA intron (NR_149022, intron 3 of 3) intron (NR_149022, intron 3 of 3) -11236 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 129.75-10 chr10 59572508 59572796 + 0.75 NA Intergenic L1MEc|LINE|L1 137239 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 209.25-25 chr3 50173831 50174239 + 0.75 NA intron (NM_001318798, intron 3 of 17) intron (NM_001318798, intron 3 of 17) 15016 NM_001318800 6405 Hs.32981 NM_004186 ENSG00000001617 SEMA3F SEMA-IV|SEMA4|SEMAK semaphorin 3F protein-coding 206.5-53 chr8 29181127 29181558 + 0.75 NA intron (NM_015254, intron 7 of 39) L2a|LINE|L2 81728 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 138.75-53 chr4 61352983 61353285 + 0.75 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 150962 NM_001371342 115.75-89 chr7 43799434 43799755 + 0.75 NA intron (NM_001253823, intron 6 of 8) AluSx3|SINE|Alu 40914 NM_000712 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 149.5-64 chr21 45841799 45842196 + 0.75 NA intron (NM_001348243, intron 3 of 15) intron (NM_001348243, intron 3 of 15) -5578 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 170.75-13 chr10 77424457 77424792 + 0.75 NA intron (NM_001271519, intron 1 of 28) L2c|LINE|L2 73752 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 211.5-31 chr2 229864827 229865190 + 0.75 NA intron (NM_001348330, intron 2 of 41) intron (NM_001348330, intron 2 of 41) 56671 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 164.25-13 chr11 83293034 83293329 + 0.75 NA Intergenic Intergenic -6774 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 119-11 chr12 24777508 24777825 + 0.75 NA Intergenic Intergenic 124556 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 120.25-29 chr16 30816397 30816685 + 0.75 NA Intergenic L1MB8|LINE|L1 -29336 NM_001345970 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 119.75-27 chr14 68497715 68497877 + 0.75 NA TTS (NM_002877) TTS (NM_002877) 130991 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 117.75-35 chr19 37383871 37384134 + 0.75 NA intron (NM_032453, intron 4 of 4) L1M8|LINE|L1 12903 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 211.75-23 chr2 227671698 227672125 + 0.75 NA Intergenic Intergenic 34745 NM_001371412 119.75-41 chr19 37215468 37215818 + 0.75 NA Intergenic L1ME1|LINE|L1 -2571 NM_001345947 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 140.25-3 chr1 93096007 93096267 + 0.75 NA intron (NM_001164393, intron 1 of 12) HAL1|LINE|L1 16854 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 178.5-33 chr2 190727522 190727843 + 0.75 NA Intergenic Intergenic 68524 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 129.25-3 chr1 110019774 110020090 + 0.75 NA intron (NM_001242673, intron 15 of 16) intron (NM_001242673, intron 15 of 16) -11645 NM_001270768 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 115.75-43 chr2 71136602 71136811 + 0.75 NA intron (NM_005791, intron 4 of 10) intron (NM_005791, intron 4 of 10) 6072 NM_005791 10199 Hs.656208 NM_005791 ENSG00000124383 MPHOSPH10 CT90|MPP10|MPP10P|PPP1R106 M-phase phosphoprotein 10 protein-coding 114.75-65 chr3 173918954 173919180 + 0.75 NA intron (NR_046664, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 1729 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 118.75-66 chr22 48098195 48098385 + 0.75 NA Intergenic Intergenic -176074 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 113.25-13 chr10 26541021 26541207 + 0.75 NA intron (NM_019043, intron 10 of 14) intron (NM_019043, intron 10 of 14) 38193 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 125-83 chr6 50407229 50407397 + 0.75 NA Intergenic Intergenic -306231 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 142.25-52 chr5 55835575 55835852 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -15644 NM_139017 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 155-18 chr13 84896510 84896893 + 0.75 NA Intergenic Intergenic 113047 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 190-11 chr12 47965731 47966013 + 0.75 NA exon (NM_001143841, exon 4 of 8) exon (NM_001143841, exon 4 of 8) 2276 NM_001143842 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 155.75-59 chr6 61707663 61707957 + 0.75 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 133680 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 214-26 chr3 973569 974002 + 0.75 NA Intergenic Intergenic -119239 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 163.5-35 chr18 6458201 6458478 + 0.75 NA Intergenic L1MB5|LINE|L1 -43080 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 144.5-15 chr10 111063983 111064346 + 0.75 NA Intergenic AluSz|SINE|Alu -12865 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 134-2 chr1 40174558 40174839 + 0.75 NA intron (NM_012421, intron 1 of 7) intron (NM_012421, intron 1 of 7) 13311 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 187.5-53 chr3 149720340 149720666 + 0.75 NA intron (NM_001348362, intron 2 of 9) L1MB3|LINE|L1 4285 NM_001348362 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 145-39 chr2 202440996 202441316 + 0.75 NA intron (NM_001204, intron 1 of 12) AluSx3|SINE|Alu 64829 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 148.5-95 chr6 149394105 149394407 + 0.75 NA intron (NM_001292034, intron 3 of 6) L1MCc|LINE|L1 -6006 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 179.75-24 chr18 61777522 61777818 + 0.75 NA Intergenic Intergenic 29494 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 165.25-5 chr1 152335194 152335571 + 0.75 NA non-coding (NR_103778, exon 4 of 7) non-coding (NR_103778, exon 4 of 7) -1686 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 134.5-43 chr2 15466682 15466911 + 0.75 NA intron (NR_052013, intron 19 of 50) AluSz6|SINE|Alu 94538 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 166-11 chr11 44879313 44879588 + 0.75 NA intron (NM_130783, intron 3 of 9) L2a|LINE|L2 70710 NM_001258320 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 116.25-84 chr7 39755941 39756237 + 0.75 NA intron (NR_026999, intron 1 of 11) MLT1K|LTR|ERVL-MaLR 22521 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 118.25-106 chr8 6583554 6583836 + 0.75 NA intron (NM_024596, intron 12 of 13) intron (NM_024596, intron 12 of 13) -20450 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 133.25-72 chr7 30881049 30881315 + 0.75 NA intron (NR_037598, intron 17 of 19) intron (NR_037598, intron 17 of 19) -30512 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 229.25-8 chr15 91809808 91810206 + 0.75 NA Intergenic L1MC1|LINE|L1 -43701 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 237.5-28 chr3 32021626 32022184 + 0.75 NA Intergenic AluJo|SINE|Alu -40055 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 118-67 chr8 21933359 21933578 + 0.75 NA intron (NM_015024, intron 1 of 27) intron (NM_015024, intron 1 of 27) 13806 NR_156173 23039 Hs.172685 NM_015024 ENSG00000130227 XPO7 EXP7|RANBP16 exportin 7 protein-coding 126.25-5 chr1 116479782 116480093 + 0.75 NA Intergenic MER44C|DNA|TcMar-Tigger -1111 NR_125972 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 142.25-29 chr18 431195 431525 + 0.75 NA intron (NM_130386, intron 2 of 9) L2c|LINE|L2 69341 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 134.25-2 chr1 101489686 101489992 + 0.75 NA Intergenic L1PA16|LINE|L1 166002 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 169-8 chr11 57661649 57661947 + 0.75 NA TTS (NM_001142597) TTS (NM_001142597) 4036 NM_006831 10978 Hs.523687 NM_006831 ENSG00000172409 CLP1 HEAB|hClp1 cleavage and polyadenylation factor I subunit 1 protein-coding 122.75-22 chr14 30880070 30880461 + 0.75 NA intron (NM_001347720, intron 5 of 10) intron (NM_001347720, intron 5 of 10) 5706 NM_004086 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 227.5-27 chr2 176770291 176770823 + 0.75 NA Intergenic Intergenic 132803 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 114.5-94 chr7 15688832 15689128 + 0.75 NA intron (NR_110094, intron 1 of 1) intron (NR_110094, intron 1 of 1) 602 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 122.5-25 chr13 74611681 74611927 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR 58961 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 184.5-84 chr9 28608580 28609004 + 0.75 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 110513 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 119.25-10 chr10 122313744 122314058 + 0.75 NA intron (NM_001318189, intron 10 of 15) L1ME3A|LINE|L1 42605 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 198-49 chr9 109178932 109179237 + 0.75 NA intron (NM_019114, intron 24 of 25) intron (NM_019114, intron 24 of 25) -11793 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 209.75-27 chr3 99271930 99272279 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 -366490 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 123.5-102 chr8 17781073 17781290 + 0.75 NA intron (NM_001363061, intron 1 of 14) intron (NM_001363061, intron 1 of 14) 19736 NM_001001924 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 208.25-30 chr4 150143305 150143634 + 0.75 NA intron (NM_001040260, intron 2 of 15) AluJo|SINE|Alu 65024 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 119.5-48 chr16 76918370 76918664 + 0.75 NA Intergenic Intergenic 49581 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 146.5-62 chr3 122428938 122429234 + 0.75 NA intron (NR_026698, intron 13 of 14) L1MC|LINE|L1 12880 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 151.25-46 chr5 94254279 94254511 + 0.75 NA intron (NM_001145678, intron 20 of 20) MamSINE1|SINE|tRNA-RTE -142696 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 228-33 chr5 126656869 126657327 + 0.75 NA Intergenic AluSx|SINE|Alu 25393 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 148-60 chr7 1218188 1218516 + 0.75 NA Intergenic Intergenic -14520 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 200.75-4 chr1 91995546 91995898 + 0.75 NA intron (NM_001726, intron 15 of 18) AluSq|SINE|Alu -34263 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 161.25-13 chr10 111017558 111017882 + 0.75 NA Intergenic Intergenic 28794 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 206.25-9 chr11 77464929 77465356 + 0.75 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 8921 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 174.5-59 chr3 183364764 183365106 + 0.75 NA intron (NM_015078, intron 3 of 29) L1MC4|LINE|L1 63334 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 189.75-12 chr15 65532819 65533173 + 0.75 NA intron (NM_016395, intron 1 of 10) intron (NM_016395, intron 1 of 10) 2533 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 135.5-24 chr12 47767424 47767767 + 0.75 NA Intergenic L2b|LINE|L2 -5643 NM_017842 55652 Hs.438867 NM_017842 ENSG00000211584 SLC48A1 HRG-1|HRG1|hHRG-1 solute carrier family 48 member 1 protein-coding 148.5-19 chr12 67808110 67808436 + 0.75 NA Intergenic Intergenic -78798 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 213.5-5 chr10 714468 714839 + 0.75 NA Intergenic L1ME3B|LINE|L1 -24985 NM_014974 22982 Hs.432397 NM_014974 ENSG00000151240 DIP2C KIAA0934 disco interacting protein 2 homolog C protein-coding 115.25-19 chr11 77481784 77482068 + 0.75 NA Intergenic L2a|LINE|L2 -7863 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 124.25-14 chr10 64647252 64647588 + 0.75 NA Intergenic L2a|LINE|L2 -178108 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 145.25-52 chr3 54607191 54607474 + 0.75 NA intron (NM_018398, intron 9 of 37) AluSx3|SINE|Alu 32525 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 144.75-27 chr14 88969332 88969622 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR 144826 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 144.75-37 chr2 18814835 18815034 + 0.75 NA Intergenic MIR3|SINE|MIR 212037 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 172.5-8 chr11 112115141 112115536 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 28465 NR_077060 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 114.75-35 chr14 83531659 83531947 + 0.75 NA Intergenic MER57C2|LTR|ERV1 889171 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 159.25-46 chr22_KI270733v1_random 149018 149479 + 0.75 NA Intergenic Intergenic 19044 NR_146118 109864272 NR_146118 RNA28SN4 RN28S1|RNA28S5 RNA, 28S ribosomal N4 rRNA 113.5-55 chr2 37349717 37349904 + 0.75 NA intron (NM_012413, intron 1 of 6) intron (NM_012413, intron 1 of 6) 5180 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 129.25-80 chr9 29847795 29848169 + 0.75 NA Intergenic Intergenic 560472 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 153-39 chr4 112084918 112085239 + 0.75 NA Intergenic Intergenic -60376 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 233.25-37 chr8 117659819 117660247 + 0.75 NA Intergenic Intergenic 139320 NM_080651 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 117.5-14 chr11 69507600 69507809 + 0.75 NA Intergenic L1MB7|LINE|L1 22143 NR_120542 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 250.75-28 chr8 139457720 139458225 + 0.75 NA Intergenic L2c|LINE|L2 245151 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 120-72 chr4 150117741 150117938 + 0.75 NA intron (NM_001040260, intron 2 of 15) L1PB3|LINE|L1 39394 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 175-5 chr10 84336096 84336511 + 0.75 NA intron (NM_018999, intron 1 of 10) L2a|LINE|L2 7714 NM_001351292 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 154.5-37 chr17 65767822 65768134 + 0.75 NA intron (NM_001353129, intron 21 of 26) L1M2a|LINE|L1 58473 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 182.75-26 chr21 29383467 29383932 + 0.75 NA Intergenic L1MC5a|LINE|L1 11198 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 183-11 chr10 116468529 116468932 + 0.75 NA intron (NM_001011709, intron 8 of 11) intron (NM_001011709, intron 8 of 11) 40883 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 119.25-102 chr8 131369216 131369438 + 0.75 NA Intergenic Intergenic -328418 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 125.5-111 chr6 72164515 72164916 + 0.75 NA intron (NM_014989, intron 4 of 33) MLT1A|LTR|ERVL-MaLR -48178 NM_001350447 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 211.75 chr1 159372121 159372443 + 0.75 NA Intergenic HAL1|LINE|L1 -25183 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 114-51 chr2 229540022 229540209 + 0.75 NA intron (NM_139072, intron 5 of 12) L2c|LINE|L2 174440 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 142.75-51 chr22 45293424 45293714 + 0.75 NA intron (NM_001167574, intron 3 of 3) MIR|SINE|MIR 8620 NM_001167574 7380 Hs.632787 NM_006953 ENSG00000100373 UPK3A UP3A|UPIII|UPIIIA|UPK3 uroplakin 3A protein-coding 114.75-57 chr22 24750390 24750608 + 0.75 NA intron (NM_001008496, intron 9 of 20) AluSp|SINE|Alu -14002 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 120-18 chr10 64574568 64574835 + 0.75 NA Intergenic L2a|LINE|L2 -250827 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 133.5-58 chr21 22635589 22635835 + 0.75 NA Intergenic Intergenic -443572 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 125.5-83 chr3 113830387 113830718 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -8236 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 181.75-29 chr4 12650213 12650543 + 0.75 NA Intergenic LTR83|LTR|ERVL 426927 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 144.25-13 chr10 101089691 101090045 + 0.75 NA non-coding (NR_130722, exon 3 of 3) non-coding (NR_130722, exon 3 of 3) 23569 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 132.25-16 chr11 35213255 35213569 + 0.75 NA intron (NM_001001389, intron 13 of 16) intron (NM_001001389, intron 13 of 16) 50462 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 132.5-106 chr7 78420300 78420497 + 0.75 NA intron (NM_001301128, intron 6 of 20) AmnSINE1|SINE|5S-Deu-L2 73156 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 141.25-24 chr12 81055015 81055345 + 0.75 NA Intergenic Intergenic -22899 NM_001330243 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 157.75-25 chr14 72543663 72543927 + 0.75 NA intron (NM_001370281, intron 18 of 18) AluSz|SINE|Alu 26975 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 236.5-17 chr15 100326339 100326708 + 0.75 NA intron (NM_139057, intron 3 of 21) L1MCc|LINE|L1 15452 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 173.25-3 chr1 97428477 97428857 + 0.75 NA intron (NM_000110, intron 14 of 22) intron (NM_000110, intron 14 of 22) 332744 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 196.5-68 chr6 146969539 146969952 + 0.75 NA intron (NR_034115, intron 7 of 10) MamGypsy2-I|LTR|Gypsy -165921 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 223-39 chr8 120213959 120214296 + 0.75 NA intron (NM_021110, intron 13 of 47) intron (NM_021110, intron 13 of 47) 89025 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 179-45 chr5 21052984 21053341 + 0.75 NA Intergenic L2c|LINE|L2 -406318 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 182-19 chr18 37194119 37194558 + 0.75 NA intron (NR_136303, intron 10 of 13) L1ME4b|LINE|L1 -80122 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 159.75-67 chr8 122733076 122733494 + 0.75 NA Intergenic MIRb|SINE|MIR -39179 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 128.75-42 chr2 112617848 112618122 + 0.75 NA Intergenic AluSc8|SINE|Alu 26195 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 117.75-66 chr5 64209729 64209927 + 0.75 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 43985 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 147-56 chr3 185054166 185054539 + 0.75 NA Intergenic L1MA5A|LINE|L1 98708 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 158.25-15 chr13 53729934 53730276 + 0.75 NA Intergenic Intergenic -85314 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 150.25-20 chr14 21322451 21322833 + 0.75 NA intron (NM_020366, intron 13 of 23) (TC)n|Simple_repeat|Simple_repeat 34665 NM_020366 57096 Hs.126035 NM_020366 ENSG00000092200 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d RPGR interacting protein 1 protein-coding 165.5-10 chr11 10331738 10332138 + 0.75 NA intron (NR_103765, intron 2 of 3) MLT1E1A|LTR|ERVL-MaLR 23625 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 147.25-63 chr7 26737343 26737703 + 0.75 NA intron (NM_003930, intron 6 of 12) intron (NM_003930, intron 6 of 12) 99652 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 140-19 chr14 70380551 70380911 + 0.75 NA intron (NM_001202549, intron 2 of 4) Charlie29a|DNA|hAT-Charlie -21048 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 232.75-18 chr5 129685151 129685716 + 0.75 NA intron (NM_133638, intron 18 of 22) L2b|LINE|L2 -62661 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 127-88 chr7 86853537 86853772 + 0.75 NA intron (NM_001363522, intron 4 of 4) intron (NM_001363522, intron 4 of 4) 112245 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 196.25-35 chr2 145436425 145436801 + 0.75 NA Intergenic Intergenic 768646 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 150.25-9 chr10 43973820 43974091 + 0.75 NA intron (NR_136147, intron 4 of 4) MLT1E1A|LTR|ERVL-MaLR 61553 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 140.25-76 chr6 55525975 55526405 + 0.75 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 53024 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 155.25-60 chr6 20486737 20486986 + 0.75 NA intron (NM_001243076, intron 5 of 6) intron (NM_001243076, intron 5 of 6) -47596 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 119.5-41 chr15 67353856 67354077 + 0.75 NA intron (NM_001031715, intron 6 of 20) L1M5|LINE|L1 -98768 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 162-46 chr5 22448680 22448974 + 0.75 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -234977 NM_001364108 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 147.25-17 chr15 94919003 94919344 + 0.75 NA Intergenic L2b|LINE|L2 63810 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 143-59 chr5 101407757 101408041 + 0.75 NA Intergenic L1PB2|LINE|L1 -504617 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 164-9 chr11 9945262 9945639 + 0.75 NA intron (NM_030962, intron 16 of 39) L1PA16|LINE|L1 106308 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 155.75-48 chr5 26463694 26464005 + 0.75 NA Intergenic Intergenic 574737 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 157-50 chr5 13050318 13050725 + 0.75 NA Intergenic Intergenic -17635 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 167-41 chr21 22334216 22334636 + 0.75 NA Intergenic Intergenic 235809 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 139.5-9 chr10 73254247 73254478 + 0.75 NA TTS (NR_134459) TTS (NR_134459) 1621 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 114.5-65 chr22 26250749 26251005 + 0.75 NA intron (NM_001184776, intron 1 of 14) L1MA5|LINE|L1 81403 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 155-19 chr14 33290205 33290456 + 0.75 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 351451 NM_001165893 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 118.5-29 chr12 25572478 25572680 + 0.75 NA intron (NM_001352234, intron 1 of 8) intron (NM_001352234, intron 1 of 8) -19296 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 195.25-40 chr6 65657472 65657928 + 0.75 NA intron (NM_001292009, intron 1 of 43) Tigger1|DNA|TcMar-Tigger 49525 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 174.75-28 chr2 102820895 102821141 + 0.75 NA Intergenic L2a|LINE|L2 58987 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 322.5-7 chr2 47633688 47634357 + 0.75 NA Intergenic MER3|DNA|hAT-Charlie -63691 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 145.25-23 chr12 47858236 47858466 + 0.75 NA intron (NM_001017535, intron 5 of 10) intron (NM_001017535, intron 5 of 10) -38448 NR_160436 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 177-25 chr2 35528696 35529150 + 0.75 NA Intergenic L1MA3|LINE|L1 57518 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 222.5-33 chr3 178223290 178223756 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -195678 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 143.25-44 chr22 43416516 43416851 + 0.75 NA 5' UTR (NM_001362786, exon 1 of 7) 5' UTR (NM_001362786, exon 1 of 7) 131 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 283.25 chr1 28356364 28356985 + 0.75 NA Intergenic L2b|LINE|L2 -13066 NM_001350159 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 152.75-24 chr17 70120506 70120828 + 0.75 NA intron (NM_001291622, intron 4 of 5) MSTA|LTR|ERVL-MaLR 15822 NM_001291623 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 121-57 chr5 83709175 83709554 + 0.75 NA intron (NM_001884, intron 1 of 4) L1MEg|LINE|L1 11491 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 125.5-29 chr11 114480874 114481147 + 0.75 NA Intergenic LTR84b|LTR|ERVL 41543 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 201.25-17 chr2 129725194 129725884 + 0.75 NA Intergenic Intergenic 151952 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 135.75-5 chr1 64934874 64935072 + 0.75 NA intron (NM_001321852, intron 1 of 24) intron (NM_001321852, intron 1 of 24) 31576 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 145.75-45 chr20 14605856 14606115 + 0.75 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 51601 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 119.5-34 chr14 55758844 55759155 + 0.75 NA Intergenic Intergenic -7246 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 148.75-70 chr8 80927814 80928061 + 0.75 NA Intergenic HAL1b|LINE|L1 -53156 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 226.25-29 chr5 56668672 56669178 + 0.75 NA Intergenic Intergenic -62669 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 162.25-49 chr8 144808988 144809469 + 0.75 NA TTS (NM_213605) TTS (NM_213605) 10352 NM_001317936 340385 Hs.521942 NM_213605 ENSG00000197363 ZNF517 - zinc finger protein 517 protein-coding 126.75-45 chr2 163741244 163741538 + 0.75 NA Intergenic Intergenic -5383 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 127-19 chr11 134703065 134703248 + 0.75 NA Intergenic MER34A|LTR|ERV1 -32789 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 138.5-46 chr17 54769522 54769767 + 0.75 NA Intergenic L2c|LINE|L2 -131047 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 184.75-36 chr20 16180310 16180638 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -194592 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 138-7 chr10 23255022 23255209 + 0.75 NA intron (NM_001365862, intron 10 of 15) intron (NM_001365862, intron 10 of 15) 62803 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 177.75-16 chr14 49233120 49233602 + 0.75 NA Intergenic L1PA16|LINE|L1 353019 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 186.25-55 chr8 121070182 121070612 + 0.75 NA Intergenic LTR8B|LTR|ERV1 -258351 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 268-20 chr4 74237371 74237993 + 0.75 NA intron (NM_001144978, intron 6 of 7) intron (NM_001144978, intron 6 of 7) -70788 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 134.25-87 chr7 82606802 82607188 + 0.75 NA Intergenic Intergenic -163039 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 127-95 chr8 119520212 119520471 + 0.75 NA Intergenic Intergenic 72667 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 236.5-31 chr3 62608770 62609123 + 0.75 NA intron (NM_003716, intron 6 of 29) intron (NM_003716, intron 6 of 29) -235396 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 152.75-38 chr20 34615166 34615599 + 0.75 NA intron (NM_080476, intron 7 of 11) MIR|SINE|MIR 56664 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 150.75-58 chr5 75393325 75393603 + 0.75 NA intron (NM_031361, intron 10 of 16) intron (NM_031361, intron 10 of 16) 56244 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 126.25-16 chr10 119045980 119046284 + 0.75 NA intron (NM_003750, intron 17 of 21) intron (NM_003750, intron 17 of 21) 14006 NR_002917 641451 Hs.688653 NR_002917 ENSG00000207468 SNORA19 ACA19 small nucleolar RNA, H/ACA box 19 snoRNA 117.5-10 chr10 68081223 68081577 + 0.75 NA Intergenic Tigger3a|DNA|TcMar-Tigger -6117 NM_022079 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 158-33 chr2 214590858 214591117 + 0.75 NA Intergenic Intergenic 80805 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 177.5-72 chrX 126532111 126532478 + 0.75 NA Intergenic Intergenic 20520 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 165.75-6 chr10 59045553 59045956 + 0.75 NA Intergenic Intergenic 46236 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 226.25-20 chr2 156273698 156274114 + 0.75 NA Intergenic Intergenic -18975 NR_110249 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 159.5-84 chrX 68015221 68015628 + 0.75 NA Intergenic L2b|LINE|L2 418071 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 159.25-34 chr2 29999215 29999509 + 0.75 NA Intergenic L1M4|LINE|L1 -77776 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 138-80 chr8 85922329 85922668 + 0.75 NA Intergenic Intergenic -94556 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 219.5-16 chr14 87072164 87072583 + 0.75 NA Intergenic AluSc|SINE|Alu 166595 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 140.25-85 chr7 39526713 39526962 + 0.75 NA Intergenic Intergenic -39567 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 165.25-37 chr3 29279647 29279968 + 0.75 NA intron (NR_109804, intron 1 of 2) intron (NR_109804, intron 1 of 2) 1132 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 117.5-16 chr12 38434105 38434347 + 0.75 NA Intergenic Intergenic 117452 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 134.5-70 chr4 84814003 84814270 + 0.75 NA intron (NM_014991, intron 13 of 67) MER34B|LTR|ERV1 -151480 NR_152771 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 186-14 chr13 97485420 97485772 + 0.75 NA Intergenic L2b|LINE|L2 51427 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 193-33 chr2 203320984 203321280 + 0.75 NA Intergenic AluSz|SINE|Alu -7107 NM_001282932 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 151-71 chr8 123907322 123907649 + 0.75 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 55498 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 207-43 chr5 59402176 59402620 + 0.75 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -45428 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 129.75-15 chr11 41374441 41374705 + 0.75 NA intron (NM_001258419, intron 1 of 6) L1MC5a|LINE|L1 85063 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 136.75-34 chr15 25031238 25031522 + 0.75 NA promoter-TSS (NR_146168) promoter-TSS (NR_146168) -493 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 250-18 chr22 27660569 27661020 + 0.75 NA Intergenic AluJb|SINE|Alu 140962 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 198.25-40 chr5 143505962 143506484 + 0.75 NA Intergenic Intergenic -70711 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 160.5-61 chr5 157677889 157678195 + 0.75 NA intron (NM_001145132, intron 2 of 2) intron (NM_001145132, intron 2 of 2) 6509 NM_001145132 100190949 Hs.720862 NM_001145132 ENSG00000187658 C5orf52 - chromosome 5 open reading frame 52 protein-coding 125.25-13 chr10 119199865 119200150 + 0.75 NA Intergenic AluSx1|SINE|Alu -7564 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 155.25-16 chr14 22730703 22730914 + 0.75 NA Intergenic MER84-int|LTR|ERV1 -35880 NM_005015 5018 Hs.151134 NM_005015 ENSG00000155463 OXA1L OXA1 OXA1L mitochondrial inner membrane protein protein-coding 131.25-56 chr3 35952655 35952842 + 0.75 NA Intergenic L1PA15|LINE|L1 208272 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 119-55 chr4 41110684 41110870 + 0.75 NA intron (NM_173075, intron 2 of 16) MER1A|DNA|hAT-Charlie 103765 NM_001330658 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 146.75-59 chr7 51000660 51000876 + 0.75 NA Intergenic L1M8|LINE|L1 -207315 NM_001371008 184-39 chr4 58706351 58706663 + 0.75 NA Intergenic Intergenic -170179 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 119.25-73 chr4 85760688 85761010 + 0.75 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) -17949 NM_001042669 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 113.75-49 chr18 74907789 74908036 + 0.75 NA intron (NM_017757, intron 6 of 7) L1ME3G|LINE|L1 276949 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 169-36 chr22 25050685 25051032 + 0.75 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 22884 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 178.5-94 chr8 142099339 142099676 + 0.75 NA Intergenic Intergenic -76832 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 134-17 chr11 77253044 77253256 + 0.75 NA intron (NM_182833, intron 11 of 16) L1M2a|LINE|L1 48516 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 127-71 chr4 75037139 75037427 + 0.75 NA intron (NM_015393, intron 3 of 3) intron (NM_015393, intron 3 of 3) 47425 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 123.25-74 chr7 73895730 73896038 + 0.75 NA Intergenic L1M4|LINE|L1 34725 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 139.5-78 chr5 57917818 57918213 + 0.75 NA Intergenic L1PREC2|LINE|L1 -18853 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 113-52 chr2 171864758 171864908 + 0.75 NA intron (NM_003705, intron 3 of 17) L2c|LINE|L2 29411 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 145.5-39 chr18 21365584 21365961 + 0.75 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 123530 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 216.75-34 chr4 176094036 176094475 + 0.75 NA intron (NM_181265, intron 1 of 28) intron (NM_181265, intron 1 of 28) 28414 NM_170710 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 137-54 chr4 32929159 32929399 + 0.75 NA Intergenic Intergenic 578241 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 161-27 chr16 54707563 54707911 + 0.75 NA Intergenic L1MEd|LINE|L1 140496 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 128.75-43 chr2 122215534 122215773 + 0.75 NA Intergenic Intergenic 460002 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 140-21 chr14 74198277 74198613 + 0.75 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -41004 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 138-39 chr2 119940411 119940644 + 0.75 NA intron (NM_002830, intron 15 of 26) AluJr|SINE|Alu -72550 NM_001184939 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 144-33 chr2 177837491 177837885 + 0.75 NA intron (NM_001077197, intron 7 of 20) MER57-int|LTR|ERV1 51068 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 162.5-35 chr19 5598409 5598769 + 0.75 NA intron (NM_014649, intron 13 of 20) intron (NM_014649, intron 13 of 20) 24187 NM_014649 9667 Hs.655392 NM_014649 ENSG00000130254 SAFB2 - scaffold attachment factor B2 protein-coding 135.75-71 chr4 37304779 37305121 + 0.75 NA intron (NM_001144990, intron 1 of 6) MSTA-int|LTR|ERVL-MaLR 60207 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 113-26 chr14 66716912 66717089 + 0.75 NA intron (NM_001024218, intron 2 of 21) L1PBa|LINE|L1 209593 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 126.5-98 chr5 176599705 176599951 + 0.75 NA exon (NM_052899, exon 2 of 2) exon (NM_052899, exon 2 of 2) 10328 NM_052899 114787 Hs.150549 NM_052899 ENSG00000169258 GPRIN1 GRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding 131.75-32 chr14 79997529 79997876 + 0.75 NA Intergenic Intergenic -213717 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 158.75-65 chr6 62206502 62206790 + 0.75 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 79579 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 174.5-44 chr2 239420654 239421070 + 0.75 NA Intergenic Intergenic 19114 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 122-37 chr2 59414149 59414336 + 0.75 NA Intergenic L1PB1|LINE|L1 196534 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 130-86 chrX 69745324 69745551 + 0.75 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 129324 NM_001005610 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 144.5-6 chr1 174658812 174659223 + 0.75 NA intron (NM_001366446, intron 14 of 25) intron (NM_001366446, intron 14 of 25) -41522 NM_001366450 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 130-70 chr6 23387597 23387883 + 0.75 NA Intergenic Intergenic -669816 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 131.5-34 chr18 13885626 13885939 + 0.75 NA intron (NM_001291911, intron 1 of 1) L1PB4|LINE|L1 29754 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 123.75-39 chr14 51344459 51344645 + 0.75 NA intron (NR_038358, intron 1 of 4) (AC)n|Simple_repeat|Simple_repeat 11159 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 157.25-66 chr9 5292224 5292596 + 0.75 NA Intergenic Intergenic 11818 NM_001329191 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 140.75-48 chr5 18161780 18161991 + 0.75 NA Intergenic L1M4|LINE|L1 354611 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 131.5-72 chr5 13494789 13495037 + 0.75 NA Intergenic L1MA8|LINE|L1 449567 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 120.5-35 chr15 70596106 70596464 + 0.75 NA Intergenic Intergenic -9679 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 146-66 chr9 130719485 130719758 + 0.75 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) 5740 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 165-2 chr1 190582419 190582893 + 0.75 NA Intergenic MLT2A2|LTR|ERVL -42234 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 126-13 chr10 98767549 98767802 + 0.75 NA intron (NM_021828, intron 3 of 11) (TA)n|Simple_repeat|Simple_repeat 156893 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 223.25-19 chr3 61080307 61080702 + 0.75 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 170948 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 142-29 chr2 115531705 115531916 + 0.75 NA intron (NM_001321912, intron 6 of 25) L1ME3A|LINE|L1 187995 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 136-21 chr15 57553905 57554229 + 0.75 NA Intergenic Intergenic -37837 NM_152451 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 224.5-33 chr6 9962300 9962607 + 0.75 NA Intergenic Tigger9b|DNA|TcMar-Tigger -442049 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 164-65 chr8 84470358 84470804 + 0.75 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 55097 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 193.75-2 chr1 43135925 43136212 + 0.75 NA Intergenic MER41A|LTR|ERV1 -11836 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 156-4 chr1 113759233 113759551 + 0.75 NA promoter-TSS (NM_001323052) promoter-TSS (NM_001323052) 94 NM_001323052 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 119.25-24 chr14 49539706 49539924 + 0.75 NA Intergenic MIR|SINE|MIR 46565 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 117.25-101 chrX 58178335 58178510 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -267789 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 137.75-76 chr6 27417221 27417409 + 0.75 NA intron (NR_144688, intron 5 of 8) intron (NR_144688, intron 5 of 8) 28597 NM_001322293 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 183-40 chr21 28574215 28574492 + 0.75 NA Intergenic Intergenic 35035 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 118.5-31 chr12 122961620 122961902 + 0.75 NA intron (NM_001243014, intron 1 of 11) intron (NM_001243014, intron 1 of 11) 4702 NM_001243014 23457 Hs.511951 NM_019624 ENSG00000150967 ABCB9 EST122234|TAPL ATP binding cassette subfamily B member 9 protein-coding 170-14 chr16 75064609 75064922 + 0.75 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 52007 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 214.25-5 chr1 163929434 163929804 + 0.75 NA Intergenic Intergenic -506428 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 156.75-47 chr2 71124194 71124451 + 0.75 NA exon (NM_032601, exon 2 of 3) exon (NM_032601, exon 2 of 3) 5907 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 117.75-45 chr20 3247773 3248081 + 0.75 NA Intergenic Intergenic -8737 NM_001363745 83959 Hs.105607 NM_032034 ENSG00000088836 SLC4A11 BTR1|CDPD1|CHED|CHED2|NABC1|dJ794I6.2 solute carrier family 4 member 11 protein-coding 142-50 chr4 105345542 105345842 + 0.75 NA intron (NR_126420, intron 1 of 5) Tigger12c|DNA|TcMar-Tigger 7189 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 159-60 chr8 86744750 86745015 + 0.75 NA Intergenic Intergenic -1207 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 132-49 chr3 80917122 80917307 + 0.75 NA Intergenic Intergenic -76654 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 149.75-50 chr5 43303848 43304169 + 0.75 NA intron (NM_002130, intron 1 of 9) intron (NM_002130, intron 1 of 9) 9173 NM_001324219 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 151.75-48 chr2 211824336 211824570 + 0.75 NA intron (NM_001042599, intron 3 of 26) MamTip2|DNA|hAT-Tip100 601907 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 244-7 chr14 45518844 45519463 + 0.75 NA Intergenic Intergenic 196449 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 120.25-58 chr5 15498687 15498977 + 0.75 NA Intergenic Intergenic -1348 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 221-2 chr1 40123442 40123900 + 0.75 NA Intergenic Intergenic -26201 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 171.75-33 chr20 33971350 33971657 + 0.75 NA Intergenic Intergenic -22408 NM_007367 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 132-40 chr2 167481348 167481585 + 0.75 NA Intergenic Intergenic 294094 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 189.5-16 chr14 44172988 44173263 + 0.75 NA Intergenic L1ME3Cz|LINE|L1 334158 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 124.75-67 chr5 18703115 18703470 + 0.75 NA Intergenic Intergenic 896018 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 121.75-73 chr6 52252592 52252799 + 0.75 NA Intergenic AluJr|SINE|Alu -8195 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 187.75-37 chr3 157089138 157089556 + 0.75 NA promoter-TSS (NR_034008) promoter-TSS (NR_034008) -534 NR_034008 100498859 Hs.633655 NR_034008 ENSG00000241135 LINC00881 - long intergenic non-protein coding RNA 881 ncRNA 151.75-17 chr12 25476463 25476767 + 0.75 NA intron (NM_152590, intron 8 of 8) MIR|SINE|MIR 76668 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 170.25-29 chr16 82315651 82316143 + 0.75 NA Intergenic MIR|SINE|MIR -145673 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 159.5-32 chr17 60858320 60858616 + 0.75 NA intron (NM_001330413, intron 7 of 25) L1ME1|LINE|L1 180617 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 161.5-65 chr4 79101293 79101652 + 0.75 NA intron (NR_038342, intron 3 of 5) L1PA15|LINE|L1 129724 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 115-51 chr22 24826867 24827039 + 0.75 NA intron (NM_001098498, intron 2 of 23) MIR|SINE|MIR 20732 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 126.5-68 chr20 54368976 54369193 + 0.75 NA Intergenic Intergenic -106509 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 112.75-4 chr1 182104665 182104815 + 0.75 NA Intergenic L1MEg|LINE|L1 -43028 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 228.5-17 chr2 49929684 49930037 + 0.75 NA intron (NM_001330097, intron 5 of 5) L2b|LINE|L2 44343 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 134.5-65 chr3 178411104 178411338 + 0.75 NA Intergenic Intergenic -7980 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 197.75-50 chr8 88780596 88780898 + 0.75 NA Intergenic L1M4|LINE|L1 -453264 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 119.5-104 chr6 34854536 34854843 + 0.75 NA intron (NM_017754, intron 8 of 20) intron (NM_017754, intron 8 of 20) 33353 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 150.25-6 chr1 204686838 204687089 + 0.75 NA Intergenic Intergenic -1225 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 113.25-115 chrX 30983521 30983764 + 0.75 NA Intergenic L2c|LINE|L2 88399 NM_031894 53940 Hs.333125 NM_031894 ENSG00000132446 FTHL17 CT38 ferritin heavy chain like 17 protein-coding 136.5-78 chr4 30459551 30459921 + 0.75 NA Intergenic Intergenic -260633 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 132-63 chr6 43792266 43792483 + 0.75 NA Intergenic Intergenic 20406 NM_001287044 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 192.25-40 chr9 1760764 1761035 + 0.75 NA Intergenic L1PA2|LINE|L1 -254448 NM_003070 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 180-5 chr1 65063529 65064085 + 0.75 NA intron (NM_001321853, intron 2 of 26) AluSx3|SINE|Alu 3939 NM_001321853 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 256-14 chr2 39311306 39311837 + 0.75 NA intron (NM_003618, intron 13 of 33) MLT1F|LTR|ERVL-MaLR -67588 NR_144521 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 156.75-66 chr4 63135467 63135802 + 0.75 NA Intergenic Intergenic -973869 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 138.75-10 chr12 5863565 5863821 + 0.75 NA intron (NM_001278596, intron 3 of 25) L1MA10|LINE|L1 81566 NM_001278596 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 190.75-14 chr11 38342186 38342466 + 0.75 NA Intergenic MIRb|SINE|MIR 304030 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 121.25-6 chr10 112269647 112269870 + 0.75 NA Intergenic Tigger12|DNA|TcMar-Tigger -13642 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 244.75-29 chr9 35720889 35721288 + 0.75 NA intron (NM_006289, intron 10 of 56) intron (NM_006289, intron 10 of 56) -10347 NR_106911 102465513 NR_106911 ENSG00000284195 MIR6852 hsa-mir-6852 microRNA 6852 ncRNA 182.5-63 chr6 94707020 94707593 + 0.75 NA Intergenic Intergenic 870145 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 148.25-49 chr3 59190908 59191250 + 0.75 NA Intergenic MER33|DNA|hAT-Charlie -141047 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 115.5-16 chr11 67656051 67656315 + 0.75 NA Intergenic MER101-int|LTR|ERV1 -5453 NM_080658 91703 Hs.126265 NM_080658 ENSG00000132744 ACY3 ACY-3|HCBP1 aminoacylase 3 protein-coding 127-86 chr7 9021476 9021690 + 0.75 NA Intergenic L1M4|LINE|L1 587974 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 168.25-23 chr15 93580981 93581317 + 0.75 NA Intergenic Intergenic -275411 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 136-45 chr3 524870 525104 + 0.75 NA Intergenic Charlie8|DNA|hAT-Charlie -67118 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 184.25-52 chr8 29224952 29225505 + 0.75 NA intron (NM_015254, intron 2 of 39) intron (NM_015254, intron 2 of 39) 37842 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 179.5-25 chr12 24535002 24535404 + 0.75 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 27288 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 189.5-52 chr6 37847594 37848008 + 0.75 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 28074 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 122-14 chr11 83170476 83170653 + 0.75 NA intron (NM_001346413, intron 8 of 15) intron (NM_001346413, intron 8 of 15) 13433 NM_001346414 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 142.75-66 chr5 2679947 2680195 + 0.75 NA Intergenic Intergenic -32520 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 177-32 chr20 7017575 7017939 + 0.75 NA Intergenic Intergenic 236445 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 124.25-6 chr1 199981390 199981701 + 0.75 NA Intergenic L1MC1|LINE|L1 -46165 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 121-40 chr20 46431160 46431374 + 0.75 NA intron (NR_146919, intron 2 of 3) L1MEj|LINE|L1 -24216 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 130-84 chr9 37346339 37346567 + 0.75 NA intron (NR_110317, intron 5 of 7) AluSz6|SINE|Alu -76243 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 138.25-38 chr19 43726346 43726712 + 0.75 NA Intergenic AluSx1|SINE|Alu 10453 NM_019612 56269 Hs.515444 NM_019612 ENSG00000124449 IRGC CINEMA|IFGGE|IRGC1|Iigp5|R30953_1 immunity related GTPase cinema protein-coding 133.25-6 chr1 221570445 221570759 + 0.75 NA Intergenic Intergenic 166298 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 175.5-4 chr1 163966024 163966424 + 0.75 NA Intergenic L1MA3|LINE|L1 -543033 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 129.25-76 chr8 134903175 134903408 + 0.75 NA Intergenic MamGypLTR3a|LTR|Gypsy 53356 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 120.5-55 chr20 46811885 46812229 + 0.75 NA Intergenic AluJr|SINE|Alu -82567 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 210-27 chr5 3312577 3312996 + 0.75 NA Intergenic Intergenic 134951 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 119.5-86 chr3 175351414 175351758 + 0.75 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) -17954 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 116.5-101 chr6 53810967 53811191 + 0.75 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 16074 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 239-32 chr9 108002009 108002504 + 0.75 NA Intergenic Intergenic -512487 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 123-15 chr12 84345650 84345946 + 0.75 NA Intergenic L1PA16|LINE|L1 567001 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 123-55 chr6 93731281 93731502 + 0.75 NA intron (NR_152795, intron 3 of 6) Tigger3|DNA|TcMar-Tigger 13088 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 119.25-4 chr1 109662413 109662680 + 0.75 NA TTS (NR_024538) TTS (NR_024538) -5476 NM_001142368 2946 Hs.279837 NM_000848 ENSG00000213366 GSTM2 GST4|GSTM|GSTM2-2|GTHMUS glutathione S-transferase mu 2 protein-coding 187-56 chr6 141094603 141095079 + 0.75 NA Intergenic L1ME4b|LINE|L1 411027 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 179.75-58 chr8 91712218 91712524 + 0.75 NA Intergenic L1ME1|LINE|L1 305309 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 116.5-85 chr3 180264393 180264615 + 0.75 NA Intergenic Intergenic -149669 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 123-33 chr22 25142027 25142332 + 0.75 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -29487 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 136.75-92 chr7 45299540 45299821 + 0.75 NA Intergenic L1MA9|LINE|L1 141889 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 197.75-28 chr3 97081658 97081941 + 0.75 NA intron (NM_001080448, intron 3 of 17) L1ME4a|LINE|L1 267205 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 193.25-35 chr5 26212353 26212743 + 0.75 NA Intergenic Intergenic 826038 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 214-44 chr8 140704052 140704390 + 0.75 NA intron (NR_148037, intron 26 of 34) intron (NR_148037, intron 26 of 34) 14348 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 268.25-13 chr4 84002226 84002891 + 0.75 NA intron (NR_125909, intron 8 of 8) intron (NR_125909, intron 8 of 8) 296611 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 167.75-43 chr22 46157121 46157548 + 0.75 NA intron (NM_001001928, intron 2 of 7) intron (NM_001001928, intron 2 of 7) 6539 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 140.25-89 chr8 79887832 79888050 + 0.75 NA Intergenic Intergenic -16204 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 144.25-4 chr1 118606212 118606442 + 0.75 NA Intergenic Intergenic 382016 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 146.25-2 chr1 65260715 65260940 + 0.75 NA Intergenic Intergenic -3867 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 151.75-78 chr8 107430553 107430938 + 0.75 NA intron (NM_001199859, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 67173 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 153.5-89 chr7 86684211 86684652 + 0.75 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 40517 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 157.25-30 chr17 77185583 77185863 + 0.75 NA intron (NM_001144001, intron 1 of 14) intron (NM_001144001, intron 1 of 14) 510 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 124.75-3 chr1 42194049 42194411 + 0.75 NA intron (NM_001198850, intron 8 of 12) intron (NM_001198850, intron 8 of 12) -29485 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 146.25-69 chr7 121696120 121696484 + 0.75 NA Intergenic Intergenic -176859 NM_001206839 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 189-3 chr1 63965534 63966074 + 0.75 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 146401 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 165.75-16 chr12 56731965 56732272 + 0.75 NA intron (NM_000946, intron 12 of 12) intron (NM_000946, intron 12 of 12) -6819 NM_001113202 4666 Hs.505735 NM_005594 ENSG00000196531 NACA HSD48|NAC-alpha|NACA1|skNAC nascent polypeptide associated complex subunit alpha protein-coding 161.25-53 chr3 111065278 111065620 + 0.75 NA intron (NR_045114, intron 2 of 3) L2c|LINE|L2 4510 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 119-47 chr20 44028411 44028602 + 0.75 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 82610 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 138.5-109 chr8 140889930 140890296 + 0.75 NA intron (NR_148037, intron 4 of 34) L2c|LINE|L2 110891 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 177.5-26 chr17 66403435 66403757 + 0.75 NA intron (NR_110822, intron 3 of 3) intron (NR_110822, intron 3 of 3) 13258 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 189.75-27 chr22 26247464 26247854 + 0.75 NA intron (NM_001184776, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 78185 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 178.75-19 chr16 55000220 55000657 + 0.75 NA Intergenic Intergenic 69239 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 234.5-8 chr11 24596383 24596842 + 0.75 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 99559 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 133-66 chr8 109023850 109024196 + 0.75 NA Intergenic Intergenic -62605 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 125-62 chr3 80245635 80245837 + 0.75 NA Intergenic L1MA9|LINE|L1 -477738 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 148.5-53 chr2 229198190 229198451 + 0.75 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 33772 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 239.5-29 chr8 58760441 58761016 + 0.75 NA Intergenic L1PA14|LINE|L1 -100875 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 155-45 chr5 34906753 34907188 + 0.75 NA non-coding (NR_026591, exon 5 of 5) non-coding (NR_026591, exon 5 of 5) 8534 NM_002853 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 125.25-22 chr14 72813497 72813736 + 0.75 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 79033 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 130.5-64 chr3 177036454 177036677 + 0.75 NA intron (NM_001321194, intron 13 of 16) intron (NM_001321194, intron 13 of 16) 159913 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 227.25-40 chr8 124065470 124065938 + 0.75 NA intron (NM_001039112, intron 26 of 40) intron (NM_001039112, intron 26 of 40) -24922 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 162.75-35 chr2 33503461 33503732 + 0.75 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) -10279 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 216.75-4 chr1 45117938 45118333 + 0.75 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 88470 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 132.5-80 chr4 36047455 36047772 + 0.75 NA intron (NR_146893, intron 33 of 36) intron (NR_146893, intron 33 of 36) 196326 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 126.75-65 chr4 40597605 40597905 + 0.75 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 32109 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 144.25-32 chr18 7923053 7923316 + 0.75 NA intron (NM_002845, intron 4 of 30) intron (NM_002845, intron 4 of 30) 355868 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 173-24 chr16 83609322 83609696 + 0.75 NA intron (NM_001220489, intron 7 of 12) Arthur1|DNA|hAT-Tip100 101163 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 121.5-15 chr10 64630661 64631005 + 0.75 NA Intergenic AluJr|SINE|Alu -194695 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 123.5-34 chr14 61377013 61377264 + 0.75 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 55695 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 119.5-45 chr16 3510411 3510627 + 0.75 NA intron (NM_024793, intron 1 of 7) intron (NM_024793, intron 1 of 7) 625 NM_024793 23059 Hs.155995 NM_015041 ENSG00000103351 CLUAP1 CFAP22|FAP22|IFT38 clusterin associated protein 1 protein-coding 118.25-116 chr8 136556693 136557016 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 26056 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 188.75-42 chr6 154093925 154094234 + 0.75 NA TTS (NM_001008505) TTS (NM_001008505) 4317 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 135-22 chr14 61912951 61913186 + 0.75 NA intron (NM_001367661, intron 2 of 8) L2a|LINE|L2 -14627 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 181.75-48 chrX 155039756 155040144 + 0.75 NA intron (NM_023934, intron 2 of 4) L1MA8|LINE|L1 13106 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 147-38 chr2 99374976 99375219 + 0.75 NA intron (NM_015904, intron 9 of 23) L1MEg|LINE|L1 37708 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 166-12 chr11 45149206 45149676 + 0.75 NA intron (NM_001256695, intron 1 of 7) intron (NM_001256695, intron 1 of 7) 2098 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 115.75-92 chr7 145086186 145086410 + 0.75 NA Intergenic MER39|LTR|ERV1 -250245 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 167.75-63 chr7 54329113 54329480 + 0.75 NA Intergenic Intergenic -1401 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 186.75-4 chr10 60630774 60631186 + 0.75 NA intron (NM_001204403, intron 1 of 43) L2a|LINE|L2 -58024 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 116.25-9 chr10 35709538 35709804 + 0.75 NA Intergenic ORSL|DNA|hAT-Tip100 -68237 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 145.25-66 chr5 158990724 158990917 + 0.75 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 107136 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 145-24 chr15 78140084 78140493 + 0.75 NA Intergenic Intergenic -8753 NR_125435 10518 Hs.129867 NM_006383 ENSG00000136425 CIB2 DFNB48|KIP2|USH1J calcium and integrin binding family member 2 protein-coding 165.75-54 chr5 82303090 82303452 + 0.75 NA intron (NM_001017971, intron 3 of 9) intron (NM_001017971, intron 3 of 9) 23809 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 130.25-3 chr1 42108116 42108334 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -45185 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 114.25-91 chr6 125671929 125672152 + 0.75 NA Intergenic L1MC4|LINE|L1 -2313 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 146.5-24 chr14 34877370 34877658 + 0.75 NA Intergenic Intergenic -2154 NM_013448 11177 Hs.509140 NM_013448 ENSG00000198604 BAZ1A ACF1|WALp1|WCRF180|hACF1 bromodomain adjacent to zinc finger domain 1A protein-coding 180.5-14 chr11 22396939 22397179 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR 58678 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 195.25-25 chr2 116365754 116366110 + 0.75 NA Intergenic Intergenic 1022117 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 179-32 chr2 70472706 70473082 + 0.75 NA intron (NR_046798, intron 1 of 2) intron (NR_046798, intron 1 of 2) 8746 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 117-73 chr6 23760771 23761017 + 0.75 NA Intergenic Intergenic -365321 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 204.25-31 chr2 213490232 213490708 + 0.75 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 206006 NM_024532 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 135-64 chr6 90446344 90446568 + 0.75 NA Intergenic Intergenic 133714 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 210.25-18 chr17 60991210 60991655 + 0.75 NA intron (NM_001330413, intron 15 of 25) L1ME3B|LINE|L1 313581 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 122.25-89 chr8 12968748 12969006 + 0.75 NA intron (NM_020844, intron 1 of 4) intron (NM_020844, intron 1 of 4) 23204 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 120.5-89 chr6 41761623 41761920 + 0.75 NA Intergenic AluJo|SINE|Alu -14370 NM_001166424 5225 Hs.1867 NM_002630 ENSG00000096088 PGC PEPC|PGII progastricsin protein-coding 209.25-12 chr15 83764282 83764750 + 0.75 NA intron (NM_207517, intron 3 of 29) LTR33|LTR|ERVL 110393 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 125.75-38 chr2 110764269 110764562 + 0.75 NA intron (NM_001371254, intron 1 of 18) L1MC1|LINE|L1 31842 NM_001365487 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 146-2 chr1 66300388 66300608 + 0.75 NA intron (NM_001037340, intron 5 of 14) MIR3|SINE|MIR -31610 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 151-56 chr5 65890413 65890686 + 0.75 NA Intergenic L1MC5a|LINE|L1 -36005 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 132.5-33 chr15 68104768 68104999 + 0.75 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 50307 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 174.25-48 chr5 115658389 115658776 + 0.75 NA intron (NR_104674, intron 3 of 4) L1ME3|LINE|L1 14070 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 120.5-106 chr8 104480104 104480431 + 0.75 NA Intergenic AluJr|SINE|Alu 4198 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 229-14 chr16 11377146 11377522 + 0.75 NA intron (NM_001370704, intron 66 of 66) L1MB3|LINE|L1 31875 NM_152308 116028 Hs.347524 NM_152308 ENSG00000175643 RMI2 BLAP18|C16orf75 RecQ mediated genome instability 2 protein-coding 139.5-84 chr5 145842728 145843046 + 0.75 NA Intergenic Intergenic -7545 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 152.75-50 chr4 80275920 80276287 + 0.75 NA intron (NM_004464, intron 2 of 2) intron (NM_004464, intron 2 of 2) 7838 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 159.25-45 chr22 48404855 48405084 + 0.75 NA Intergenic Intergenic -84584 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 208.5-42 chr20 2307281 2307683 + 0.75 NA intron (NM_003245, intron 1 of 12) L2c|LINE|L2 11481 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 125-26 chr14 69252514 69252787 + 0.75 NA Intergenic Intergenic -7508 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 136.75-30 chr14 66247255 66247617 + 0.75 NA Intergenic Intergenic -238935 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 172.75-30 chr5 18954227 18954571 + 0.75 NA Intergenic Intergenic 931873 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 183-66 chr7 116936199 116936524 + 0.75 NA Intergenic Intergenic -17140 NM_001369598 7982 Hs.368131 NM_018412 ENSG00000004866 ST7 ETS7q|FAM4A|FAM4A1|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 142-32 chr2 207562044 207562327 + 0.75 NA intron (NM_001371426, intron 4 of 8) intron (NM_001371426, intron 4 of 8) 3063 NM_001371428 195.25-35 chr5 44882473 44882943 + 0.75 NA Intergenic L1ME3A|LINE|L1 73761 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 161.25-15 chr12 24292845 24293159 + 0.75 NA intron (NM_152989, intron 3 of 17) Arthur1B|DNA|hAT-Tip100 69731 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 125-94 chr8 80764557 80764750 + 0.75 NA intron (NM_001033723, intron 2 of 8) Ricksha_c|DNA|MULE-MuDR 109815 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 136-54 chr4 185939665 185939994 + 0.75 NA intron (NM_001270771, intron 1 of 23) L2a|LINE|L2 16543 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 129-17 chr13 27690512 27690831 + 0.75 NA Intergenic L1MDa|LINE|L1 68779 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 114.75-96 chr7 31519920 31520159 + 0.75 NA intron (NR_047565, intron 1 of 13) L1MC3|LINE|L1 2675 NR_047565 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 130.75-47 chr2 229458429 229458741 + 0.75 NA intron (NM_139072, intron 7 of 12) L1MEf|LINE|L1 -187298 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 150.75-66 chr7 34833648 34833885 + 0.75 NA intron (NM_207172, intron 5 of 8) MLT1E1A|LTR|ERVL-MaLR 565 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 127.5-110 chr6 83010192 83010468 + 0.75 NA intron (NR_146807, intron 9 of 10) L1MEi|LINE|L1 55511 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 117.25-88 chr7 123408539 123408823 + 0.75 NA Intergenic Intergenic 124267 NR_104244 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 129-62 chr6 22673022 22673387 + 0.75 NA intron (NR_134614, intron 1 of 2) intron (NR_134614, intron 1 of 2) 44720 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 165.25-46 chr5 38242614 38242984 + 0.75 NA Intergenic Intergenic -15760 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 173-40 chr3 86923867 86924199 + 0.75 NA Intergenic Intergenic 67116 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 144-8 chr10 59181273 59181565 + 0.75 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 3952 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 169.5-92 chrX 58403394 58403793 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -492960 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 127.75-25 chr12 131513266 131513488 + 0.75 NA Intergenic L2a|LINE|L2 134744 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 180.5-27 chr15 70656105 70656494 + 0.75 NA 3' UTR (NM_001008224, exon 19 of 19) 3' UTR (NM_001008224, exon 19 of 19) 21050 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 177.75-53 chr6 119969979 119970258 + 0.75 NA Intergenic L1ME1|LINE|L1 -45061 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 135.5-76 chr3 94400145 94400510 + 0.75 NA Intergenic Intergenic 337266 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 137.75-92 chr8 138968522 138968850 + 0.75 NA Intergenic LTR39|LTR|ERV1 -54645 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 209-35 chr8 79527183 79527605 + 0.75 NA Intergenic THE1D|LTR|ERVL-MaLR -83723 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 122.25-42 chr19 28845768 28846106 + 0.75 NA Intergenic Intergenic -118243 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 189.5-6 chr10 85912168 85912454 + 0.75 NA intron (NM_017551, intron 5 of 15) intron (NM_017551, intron 5 of 15) 334580 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 214.25-39 chr6 74566367 74566782 + 0.75 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 497123 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 145.75-59 chr5 7072885 7073137 + 0.75 NA Intergenic Intergenic 196343 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 127.75-7 chr10 18806351 18806575 + 0.75 NA Intergenic LTR89|LTR|ERVL? 147032 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 195-40 chr4 54895107 54895463 + 0.75 NA Intergenic MER119|DNA|hAT-Charlie 230310 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 145.5-26 chr13 75025642 75025951 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity 214585 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 133.25-60 chr4 57041021 57041251 + 0.75 NA intron (NM_001553, intron 1 of 4) Tigger19a|DNA|TcMar-Tigger 62240 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 135.25-79 chr5 108180792 108181090 + 0.75 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 201157 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 146.5-49 chr2 62374968 62375227 + 0.75 NA Intergenic LTR82A|LTR|ERVL 131098 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 177.5-13 chr12 71147576 71147976 + 0.75 NA intron (NM_001369760, intron 1 of 7) intron (NM_001369760, intron 1 of 7) 10033 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 131.5-19 chr11 117702765 117703034 + 0.75 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 94317 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 170.75-9 chr1 169493276 169493619 + 0.75 NA Intergenic L2a|LINE|L2 -7477 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 136.25-29 chr14 99839197 99839490 + 0.75 NA intron (NM_004434, intron 1 of 21) intron (NM_004434, intron 1 of 21) 45930 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 165.25-8 chr10 68186157 68186447 + 0.75 NA intron (NR_045662, intron 12 of 19) intron (NR_045662, intron 12 of 19) 45811 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 136.75-70 chr4 18025560 18025761 + 0.75 NA Intergenic MLT1I|LTR|ERVL-MaLR -3785 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 118.75-88 chr5 121615256 121615588 + 0.75 NA Intergenic Intergenic -236460 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 183.75-4 chr1 202008691 202009113 + 0.75 NA intron (NR_146472, intron 1 of 1) AluSc8|SINE|Alu 1451 NR_146472 102723465 Hs.661033 NR_146472 ELF3-AS1 SCAT7 ELF3 antisense RNA 1 ncRNA 120.25-27 chr14 69693862 69694059 + 0.75 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -73182 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 115.5-93 chr8 20542617 20542901 + 0.75 NA Intergenic Intergenic 72167 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 139.75-25 chr13 108159188 108159527 + 0.75 NA Intergenic Intergenic 55425 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 129.25-62 chr5 37377847 37378095 + 0.75 NA Intergenic Intergenic -1347 NM_001345998 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 207.25-35 chrX 57138173 57138578 + 0.75 NA promoter-TSS (NM_019003) promoter-TSS (NM_019003) -750 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 259.25 chr1 101253180 101253912 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 16797 NM_001400 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 191.75-4 chr10 85888384 85888723 + 0.75 NA intron (NM_017551, intron 5 of 15) intron (NM_017551, intron 5 of 15) 310822 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 175.25-59 chr8 124254703 124255142 + 0.75 NA Intergenic Intergenic -7524 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 127.25-7 chr1 168985701 168985936 + 0.75 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 101187 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 121.5-47 chr17 56885190 56885415 + 0.75 NA promoter-TSS (NR_027025) promoter-TSS (NR_027025) -389 NR_027025 246754 Hs.720736 NR_027025 MTVR2 - mouse mammary tumor virus receptor homolog 2 pseudo 157-22 chr16 7003836 7004200 + 0.75 NA intron (NM_001142334, intron 1 of 13) U6|snRNA|snRNA 230209 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 133-6 chr10 98713039 98713289 + 0.75 NA intron (NM_021828, intron 5 of 11) L2a|LINE|L2 211404 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 142.25-66 chr7 62689060 62689307 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 614873 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 160.25-41 chr3 190733079 190733479 + 0.75 NA Intergenic Intergenic 129415 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 132.75-57 chr2 139341383 139341717 + 0.75 NA Intergenic Intergenic 444226 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 207.75-5 chr1 215530538 215530956 + 0.75 NA Intergenic L1MB3|LINE|L1 -36557 NM_016121 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 159.5-82 chr9 2423946 2424221 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -197704 NM_001322226 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 130-74 chr7 11693902 11694203 + 0.75 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 138146 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 169.25-40 chr4 37030450 37030770 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR 28831 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 186-8 chr10 116780631 116781020 + 0.75 NA intron (NM_001330164, intron 2 of 12) Charlie4a|DNA|hAT-Charlie -38259 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 127.75-34 chr15 70258726 70259106 + 0.75 NA Intergenic Intergenic -160999 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 127.75-57 chr3 164250145 164250498 + 0.75 NA Intergenic MLT1D|LTR|ERVL-MaLR -78765 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 153.25-30 chr2 203213033 203213319 + 0.75 NA intron (NM_001114132, intron 53 of 54) intron (NM_001114132, intron 53 of 54) -25265 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 182-25 chr2 148433100 148433567 + 0.75 NA intron (NM_018328, intron 5 of 14) L1PA15|LINE|L1 -211418 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 145-8 chr11 19772154 19772379 + 0.75 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -12183 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 234.5-33 chr5 53134034 53134449 + 0.75 NA Intergenic Intergenic 24399 NR_104654 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 154-24 chr15 96183399 96183741 + 0.75 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -55729 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 166.25-36 chr2 235204261 235204708 + 0.75 NA Intergenic Intergenic 176749 NM_001371306 154.25-40 chr2 152859448 152859715 + 0.75 NA Intergenic Intergenic 140944 NR_146430 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 192.75-3 chr10 12488159 12488605 + 0.75 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) -90371 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 131-57 chr5 166578133 166578476 + 0.75 NA Intergenic Intergenic 348066 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 137.75-34 chr16 84763378 84763704 + 0.75 NA intron (NR_073577, intron 7 of 11) L1MC4|LINE|L1 -56444 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 117.25-13 chr10 51070649 51070915 + 0.75 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) -2230 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 169.5-63 chr5 27327308 27327563 + 0.75 NA Intergenic L1ME3A|LINE|L1 -144857 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 129.5-93 chr8 139123739 139123963 + 0.75 NA Intergenic Intergenic -209810 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 117.25-81 chr6 71529928 71530138 + 0.75 NA Intergenic Intergenic 109006 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 174.75-25 chr17 79316718 79317090 + 0.75 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 199244 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 125.5-53 chr16 26283616 26283969 + 0.75 NA Intergenic Intergenic 258555 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 141.5-81 chr4 27547097 27547336 + 0.75 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 329737 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 166.5-50 chr19 27371020 27371265 + 0.75 NA Intergenic L1PA3|LINE|L1 -422289 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 141.25-46 chr2 31462816 31463174 + 0.75 NA Intergenic MIRc|SINE|MIR -48253 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 156.5-57 chr5 20073396 20073829 + 0.75 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -85412 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 196.25-65 chr8 117402669 117403126 + 0.75 NA Intergenic Intergenic -117816 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 161-26 chr15 42728049 42728364 + 0.75 NA exon (NM_138477, exon 21 of 28) exon (NM_138477, exon 21 of 28) 8922 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 135.25-14 chr10 74844373 74844654 + 0.75 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) 17913 NM_001370137 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 115.5-65 chr4 52553184 52553481 + 0.75 NA Intergenic Intergenic 103207 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 121.5-50 chr18 1238435 1238694 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR 121065 NR_023925 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 250.25-10 chr20 52444912 52445690 + 0.75 NA Intergenic L2a|LINE|L2 -175537 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 116.75-48 chr22 24777376 24777628 + 0.75 NA Intergenic L1MEf|LINE|L1 -2782 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 119.25-26 chr14 60763066 60763371 + 0.75 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 28457 NM_001177963 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 197.75-51 chr8 115582146 115582570 + 0.75 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 85655 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 140.25-38 chr2 134326756 134326970 + 0.75 NA intron (NM_001371457, intron 5 of 16) L2a|LINE|L2 72791 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 152.75-52 chr5 44504452 44504702 + 0.75 NA intron (NR_131946, intron 1 of 2) MLT-int|LTR|ERVL-MaLR 5705 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 157-12 chr11 87291735 87292030 + 0.75 NA intron (NR_033149, intron 5 of 13) L2a|LINE|L2 253948 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 127.25-51 chr2 88822819 88823103 + 0.75 NA Intergenic Intergenic 10591 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 191.25-62 chr9 105720265 105720715 + 0.75 NA intron (NM_018112, intron 2 of 5) intron (NM_018112, intron 2 of 5) 25949 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 116-62 chr6 80176301 80176500 + 0.75 NA intron (NR_134945, intron 7 of 10) L1MEd|LINE|L1 69729 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 123.75-85 chr5 15693204 15693592 + 0.75 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -78396 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 154.75-3 chr10 17550202 17550572 + 0.75 NA Intergenic MIRb|SINE|MIR 66987 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 210.25-8 chr10 71549054 71549491 + 0.75 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -37352 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 141-60 chr5 14209756 14210165 + 0.75 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 66618 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 181.5-22 chr16 79848416 79848725 + 0.75 NA Intergenic Intergenic 53321 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 142.75-14 chr10 51920502 51920712 + 0.75 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -221012 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 176.5-75 chr6 133839972 133840333 + 0.75 NA intron (NR_027030, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 19005 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 151.25-44 chr5 36440424 36440723 + 0.75 NA Intergenic Intergenic -138671 NM_001323275 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 163-50 chr8 13406693 13407018 + 0.75 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 107996 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 130.5-104 chr8 140241954 140242296 + 0.75 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -141590 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 122.25-63 chr3 105084169 105084415 + 0.75 NA Intergenic Intergenic -282421 NM_001243281 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 121-38 chr2 159569130 159569445 + 0.75 NA intron (NM_001329857, intron 1 of 36) Charlie14a|DNA|hAT-Charlie -46007 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 128.5-17 chr12 25894702 25895042 + 0.75 NA Intergenic L2c|LINE|L2 -20793 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 148.25-65 chr7 13897394 13897768 + 0.75 NA intron (NM_001370555, intron 12 of 12) MIR|SINE|MIR 88933 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 222.25-22 chr3 72900570 72901009 + 0.75 NA intron (NM_001080393, intron 1 of 6) intron (NM_001080393, intron 1 of 6) 12743 NM_001080393 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 134-77 chr9 82840576 82840899 + 0.75 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 222405 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 148.75-61 chr6 87453296 87453540 + 0.75 NA intron (NM_001031743, intron 11 of 12) L1MA3|LINE|L1 -19507 NM_001168398 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 147-14 chr11 16177306 16177505 + 0.75 NA intron (NM_033326, intron 6 of 15) MER113|DNA|hAT-Charlie 179141 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 144.25-72 chr6 143498416 143498772 + 0.75 NA intron (NM_032020, intron 5 of 6) L2a|LINE|L2 13126 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 157.5-9 chr1 240563819 240564288 + 0.75 NA intron (NM_022469, intron 1 of 1) AluJb|SINE|Alu 48102 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 141.25-35 chr15 67391368 67391632 + 0.75 NA intron (NM_001322472, intron 8 of 13) intron (NM_001322472, intron 8 of 13) 129473 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 117.5-51 chr2 102915570 102915819 + 0.75 NA Intergenic Intergenic -19972 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 151.75-47 chr2 193569931 193570204 + 0.75 NA Intergenic L1PREC2|LINE|L1 -774202 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 194.5-47 chr3 36006509 36006877 + 0.75 NA Intergenic L1MA6|LINE|L1 262217 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 162.25-20 chr2 22141821 22142339 + 0.75 NA Intergenic Intergenic -394399 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 218.25-44 chr7 105436264 105436664 + 0.75 NA Intergenic Intergenic -47074 NM_001350746 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 148.25-72 chr8 85615083 85615471 + 0.75 NA Intergenic Intergenic 40399 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 137.25-43 chr2 77228832 77229247 + 0.75 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 243074 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 208.5-67 chr7 47234006 47234502 + 0.75 NA Intergenic Intergenic 230549 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 137.25-65 chr5 94025453 94025680 + 0.75 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 86097 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 150.25-74 chr8 99436275 99436574 + 0.75 NA intron (NM_017890, intron 22 of 61) L1MB2|LINE|L1 100306 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 119-22 chr13 100547401 100547624 + 0.75 NA intron (NM_001195087, intron 2 of 2) intron (NM_001195087, intron 2 of 2) -13710 NM_033110 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 119.5-16 chr10 115068127 115068380 + 0.75 NA Intergenic Intergenic -25112 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 131-13 chr10 97284097 97284486 + 0.75 NA intron (NM_032900, intron 1 of 11) AluSz|SINE|Alu 8346 NM_032900 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 133.75-5 chr1 166889929 166890233 + 0.75 NA Intergenic Intergenic -13817 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 190.5-63 chr5 179934967 179935296 + 0.75 NA Intergenic L1ME3A|LINE|L1 -27234 NM_015043 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 185.5-26 chr14 39839690 39840065 + 0.75 NA Intergenic LTR16B1|LTR|ERVL -407377 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 118.5-112 chr7 144407229 144407440 + 0.75 NA intron (NM_001080413, intron 1 of 9).2 intron (NM_001080413, intron 1 of 9).2 2893 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 137.75-25 chr14 72018544 72018898 + 0.75 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 85194 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 149-17 chr15 83886767 83887201 + 0.75 NA intron (NM_207517, intron 10 of 29) intron (NM_207517, intron 10 of 29) -193203 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 180.5-34 chr2 13248146 13248520 + 0.75 NA Intergenic Intergenic -241320 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 130.5-68 chr4 115189433 115189754 + 0.75 NA Intergenic L1MC1|LINE|L1 -75973 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 193.25-6 chr10 78018519 78019013 + 0.75 NA intron (NM_007055, intron 9 of 30) AluSz6|SINE|Alu 10749 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 154.5-23 chr12 41768963 41769273 + 0.75 NA Intergenic Intergenic 4929 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 169.75-67 chrX 8067829 8068125 + 0.75 NA Intergenic Intergenic -58988 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 162.75-77 chr9 8168456 8168842 + 0.75 NA Intergenic L1ME5|LINE|L1 -368871 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 210.25-26 chr2 177925940 177926472 + 0.75 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -3369 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 129-43 chr21 21103023 21103263 + 0.75 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -44019 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 171-49 chr6 124988078 124988454 + 0.75 NA intron (NR_104440, intron 1 of 6) MER1B|DNA|hAT-Charlie 4898 NR_104440 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 113.5-77 chr3 88527854 88528149 + 0.75 NA Intergenic L1PA8A|LINE|L1 189545 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 200.5-58 chr7 29233914 29234291 + 0.75 NA intron (NM_001293072, intron 1 of 12) AluYa5|SINE|Alu -25132 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 119.25-74 chr4 105276429 105276688 + 0.75 NA 3' UTR (NM_001127208, exon 11 of 11) 3' UTR (NM_001127208, exon 11 of 11) 76323 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 115.5-69 chr4 105967777 105968015 + 0.75 NA intron (NM_001184692, intron 10 of 10) intron (NM_001184692, intron 10 of 10) 54582 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 143.5-50 chr2 61349271 61349635 + 0.75 NA intron (NM_014709, intron 12 of 79) intron (NM_014709, intron 12 of 79) 67924 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 117-3 chr1 106066366 106066615 + 0.75 NA Intergenic L1M2|LINE|L1 -38237 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 172.5-87 chr8 99239654 99240036 + 0.75 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 226579 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 181.5-19 chr15 60514222 60514667 + 0.75 NA intron (NM_134260, intron 5 of 11) (GAG)n|Simple_repeat|Simple_repeat 35266 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 120.75-23 chr12 33510069 33510317 + 0.75 NA Intergenic L1MA10|LINE|L1 -70374 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 122.75-86 chr9 103260038 103260313 + 0.75 NA intron (NR_121578, intron 6 of 9) intron (NR_121578, intron 6 of 9) 64858 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 126-89 chr8 107083429 107083685 + 0.75 NA Intergenic Intergenic 252958 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 130-32 chr2 7496587 7496784 + 0.75 NA Intergenic Intergenic 75424 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 156.75-20 chr12 77421266 77421544 + 0.75 NA Intergenic Intergenic -355836 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 148.5-93 chr6 129531636 129531976 + 0.75 NA Intergenic L1MC2|LINE|L1 178371 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 122-74 chr8 128434454 128434651 + 0.75 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 130127 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 126.75-99 chrX 95572478 95572648 + 0.75 NA Intergenic L1MC1|LINE|L1 -509337 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 118-62 chr6 141962615 141962820 + 0.75 NA Intergenic PABL_B-int|LTR|ERV1 126082 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 212-41 chr8 11203066 11203515 + 0.75 NA Intergenic Intergenic -1457 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 128-16 chr15 51499968 51500333 + 0.75 NA exon (NM_015263, exon 18 of 43) exon (NM_015263, exon 18 of 43) 122621 NM_001174116 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 172.25-61 chr5 24085125 24085445 + 0.75 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 133937 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 156.75-70 chr4 177114653 177114945 + 0.75 NA Intergenic MER39|LTR|ERV1 -195075 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 146-11 chr12 112901270 112901666 + 0.75 NA Intergenic Intergenic -5309 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 143.75-30 chr13 60704697 60705105 + 0.75 NA Intergenic L1PA13|LINE|L1 31946 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 115-56 chr3 95772925 95773165 + 0.75 NA Intergenic L1PA17|LINE|L1 -89852 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 189.5-36 chr22 27949233 27949622 + 0.75 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -28815 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 156.75-3 chr1 39311168 39311428 + 0.75 NA intron (NM_012090, intron 25 of 92) intron (NM_012090, intron 25 of 92) -97775 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 165.75-65 chr7 53389939 53390192 + 0.75 NA Intergenic Intergenic 354432 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 115.75-42 chr2 20640765 20640965 + 0.75 NA intron (NM_022460, intron 3 of 6) intron (NM_022460, intron 3 of 6) 10233 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 162.75-39 chr2 119737062 119737529 + 0.75 NA Intergenic L1ME4b|LINE|L1 -22627 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 127.75-84 chr6 113279011 113279219 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie 154332 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 145.75-49 chr21 25203947 25204210 + 0.75 NA Intergenic MER58B|DNA|hAT-Charlie 227623 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 132-65 chr6 47971782 47971989 + 0.75 NA intron (NM_207499, intron 2 of 2) HAL1|LINE|L1 96804 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 116.25-60 chr3 185510452 185510714 + 0.75 NA intron (NM_139248, intron 9 of 9) L1MC4|LINE|L1 -11548 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 180.25-10 chr11 111189750 111190180 + 0.75 NA Intergenic MER5A1|DNA|hAT-Charlie -55760 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 152-36 chr2 178538236 178538649 + 0.75 NA intron (NM_001256850, intron 304 of 312) intron (NM_001256850, intron 304 of 312) 15251 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 118.5-122 chr9 96079909 96080132 + 0.75 NA intron (NR_033838, intron 1 of 8) L3|LINE|CR1 14181 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 124.5-45 chr19 4601560 4601957 + 0.75 NA Intergenic AluSx1|SINE|Alu -37758 NM_152362 126282 Hs.465643 NM_152362 ENSG00000185361 TNFAIP8L1 TIPE1 TNF alpha induced protein 8 like 1 protein-coding 146.75-57 chr6 147289251 147289467 + 0.75 NA intron (NM_139244, intron 8 of 25) L1M5|LINE|L1 -84745 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 152-16 chr11 77651197 77651399 + 0.75 NA Intergenic L1MB3|LINE|L1 -13492 NM_001311199 1207 Hs.430733 NM_001293 ENSG00000074201 CLNS1A CLCI|CLNS1B|ICln chloride nucleotide-sensitive channel 1A protein-coding 216.75-33 chr4 152339151 152339493 + 0.75 NA intron (NM_018315, intron 3 of 10) intron (NM_018315, intron 3 of 10) 1667 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 208.5-40 chr2 108091982 108092355 + 0.75 NA Intergenic L1MA1|LINE|L1 -39413 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 134.25-82 chr7 2025066 2025311 + 0.75 NA intron (NM_001013837, intron 12 of 18) L1MC2|LINE|L1 63864 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 123.5-41 chr16 86396121 86396385 + 0.75 NA Intergenic MIRb|SINE|MIR -50574 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 143.5-91 chr6 148038654 148038899 + 0.75 NA Intergenic Intergenic -233552 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 117.5-101 chrX 25019503 25019679 + 0.75 NA Intergenic (TTTT)n|Simple_repeat|Simple_repeat -3626 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 169 chr1 10537378 10537808 + 0.75 NA intron (NM_004565, intron 3 of 8) intron (NM_004565, intron 3 of 8) 62643 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 180.5-69 chr5 41028477 41028814 + 0.75 NA intron (NM_173489, intron 24 of 41) L1MA9|LINE|L1 42697 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 155.25-38 chr2 199295908 199296235 + 0.75 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 161868 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 176-18 chr14 73234866 73235115 + 0.75 NA Intergenic AluJo|SINE|Alu -2516 NR_158678 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 240.25 chr10 69352620 69353059 + 0.75 NA intron (NM_033496, intron 2 of 17) L1MB7|LINE|L1 33992 NM_001322367 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 236-17 chr18 3569428 3570051 + 0.75 NA intron (NM_001242762, intron 5 of 9) intron (NM_001242762, intron 5 of 9) -24375 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 119.25-21 chr12 125496995 125497183 + 0.75 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) -125363 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 200.25-44 chr7 53450387 53450912 + 0.75 NA Intergenic Intergenic 361282 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 156.75-53 chr2 194737663 194738051 + 0.75 NA intron (NR_110223, intron 2 of 3) L1MC3|LINE|L1 7262 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 208.75-14 chr16 63244634 63245288 + 0.75 NA Intergenic Intergenic -1208523 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 151-3 chr1 221059695 221059935 + 0.75 NA Intergenic L1ME3G|LINE|L1 -179675 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 125.5-119 chr7 145012453 145012677 + 0.75 NA Intergenic L1MA8|LINE|L1 -176512 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 247.5-18 chr2 231174325 231174899 + 0.75 NA Intergenic Intergenic -24019 NM_001352759 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 117-47 chr20 36963720 36963936 + 0.75 NA Intergenic Intergenic -11985 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 183-46 chr3 114952183 114952632 + 0.75 NA intron (NM_001348805, intron 3 of 10) MSTD|LTR|ERVL-MaLR -51782 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 148-68 chr8 137307356 137307705 + 0.75 NA Intergenic Intergenic 106058 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 148.25-39 chr2 185381843 185382040 + 0.75 NA Intergenic Intergenic -214869 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 154.75-45 chr3 151469237 151469460 + 0.75 NA Intergenic Intergenic -10639 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 172.75-26 chr3 67254574 67254848 + 0.75 NA Intergenic L1PA8|LINE|L1 29247 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 121-59 chr5 106937856 106938053 + 0.75 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 73060 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 141.25-80 chrX 27202309 27202611 + 0.75 NA Intergenic Intergenic 260881 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 113.75-41 chr16 12937089 12937347 + 0.75 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 35620 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 138.25-10 chr10 58457276 58457493 + 0.75 NA Intergenic Intergenic -55488 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 187-21 chr2 12535335 12535687 + 0.75 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -181361 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 122-62 chr5 172348327 172348696 + 0.75 NA intron (NM_001017995, intron 10 of 12) MLT1J|LTR|ERVL-MaLR 62914 NR_130933 100288254 Hs.531911 NM_001007542 LOC100288254 - uncharacterized LOC100288254 ncRNA 172-27 chr3 20057220 20057553 + 0.75 NA intron (NM_003884, intron 1 of 17) L2|LINE|L2 16940 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 168-8 chr1 174170995 174171341 + 0.75 NA intron (NM_001366445, intron 1 of 13) intron (NM_001366445, intron 1 of 13) 11648 NR_158982 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 118.25-63 chr3 74903175 74903575 + 0.75 NA Intergenic Intergenic -311101 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 132-8 chr10 18844650 18844952 + 0.75 NA Intergenic Intergenic 185370 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 126.5-63 chr20 34141784 34142056 + 0.75 NA Intergenic L1P4a|LINE|L1 -29677 NM_001316363 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 183-16 chr11 109086357 109086667 + 0.75 NA Intergenic MIR3|SINE|MIR -335678 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 235.75-25 chr6 21915541 21916066 + 0.75 NA intron (NR_015410, intron 5 of 11) intron (NR_015410, intron 5 of 11) 231390 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 140.25-36 chr2 64459146 64459366 + 0.75 NA 3' UTR (NM_014181, exon 5 of 5) 3' UTR (NM_014181, exon 5 of 5) 5094 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 141.75-45 chr2 161034681 161035016 + 0.75 NA Intergenic Intergenic -102107 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 124.5-41 chr17 38951877 38952101 + 0.75 NA intron (NM_001008777, intron 5 of 10) AluSq2|SINE|Alu 15414 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 129-68 chr6 106917159 106917585 + 0.75 NA Intergenic MLT2B1|LTR|ERVL 56667 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 116.25-24 chr15 32988234 32988536 + 0.75 NA intron (NM_001277313, intron 7 of 20) intron (NM_001277313, intron 7 of 20) 79789 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 163.25-42 chr22 28184096 28184362 + 0.75 NA intron (NM_001145418, intron 5 of 22) MIR|SINE|MIR -263617 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 137.5-3 chr1 114578245 114578519 + 0.75 NA intron (NM_005872, intron 2 of 6) intron (NM_005872, intron 2 of 6) 3233 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 165.25-22 chr2 31202850 31203185 + 0.75 NA intron (NM_001145122, intron 3 of 21) intron (NM_001145122, intron 3 of 21) 14498 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 203-26 chr5 38408521 38408961 + 0.75 NA intron (NM_182798, intron 4 of 16) intron (NM_182798, intron 4 of 16) 5200 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 188.25 chr1 985431 985751 + 0.75 NA Intergenic L1ME1|LINE|L1 -3498 NM_001291366 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 144.75-84 chr8 89686265 89686637 + 0.75 NA Intergenic LTR78B|LTR|ERV1 71260 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 261-9 chr12 77112429 77112994 + 0.75 NA Intergenic Intergenic -47142 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 135-35 chr19 27679044 27679290 + 0.75 NA Intergenic HSAT4|Satellite|centr -114264 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 170.5-69 chr5 110963553 110963822 + 0.75 NA Intergenic Intergenic -106393 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 117.25-42 chr2 40934446 40934747 + 0.75 NA Intergenic MLT1J2|LTR|ERVL-MaLR -422161 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 208-30 chr4 152384035 152384339 + 0.75 NA intron (NM_033632, intron 2 of 11) L1MB3|LINE|L1 -1658 NM_001013415 55294 Hs.561245 NM_018315 ENSG00000109670 FBXW7 AGO|CDC4|FBW6|FBW7|FBX30|FBXO30|FBXW6|SEL-10|SEL10|hAgo|hCdc4 F-box and WD repeat domain containing 7 protein-coding 155.75-38 chr3 136077746 136078160 + 0.75 NA intron (NM_181897, intron 5 of 12) intron (NM_181897, intron 5 of 12) 55211 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 142.75-54 chr3 44593623 44593921 + 0.75 NA intron (NM_001351734, intron 2 of 6).2 intron (NM_001351734, intron 2 of 6).2 8808 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 129.25-43 chr2 77226958 77227190 + 0.75 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 241109 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 126-17 chr11 83298147 83298482 + 0.75 NA Intergenic Intergenic -11907 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 181.5-28 chr18 10211309 10211610 + 0.75 NA Intergenic Intergenic 202911 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 201.75-15 chr17 70779006 70779418 + 0.75 NA Intergenic L1MA5|LINE|L1 422967 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 126.25-49 chr2 224759223 224759394 + 0.75 NA Intergenic Intergenic -173911 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 154-44 chr20 53524655 53524871 + 0.75 NA Intergenic Intergenic -28007 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 146-49 chr5 155497931 155498248 + 0.75 NA Intergenic MER34A|LTR|ERV1 484334 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 136-18 chr14 67361696 67361933 + 0.75 NA intron (NM_004094, intron 1 of 7) intron (NM_004094, intron 1 of 7) 1486 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 226-36 chr9 35452913 35453400 + 0.75 NA intron (NR_003581, intron 11 of 17) L1M1|LINE|L1 -36955 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 113-85 chr6 39920660 39920915 + 0.75 NA intron (NR_033233, intron 2 of 8) AluJb|SINE|Alu 6929 NM_005943 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 123-51 chr6 50746136 50746378 + 0.75 NA intron (NM_172238, intron 6 of 7) AluJb|SINE|Alu 32713 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 124.75-52 chr20 13265746 13265942 + 0.75 NA intron (NM_080826, intron 1 of 5) MLT1J|LTR|ERVL-MaLR -26157 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 204.25-48 chr7 46615218 46615687 + 0.75 NA Intergenic L1MB1|LINE|L1 81670 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 180.25-50 chr4 98249246 98249688 + 0.75 NA Intergenic L2a|LINE|L2 -11917 NM_001100428 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 214-12 chr11 106915161 106915497 + 0.75 NA intron (NM_001256424, intron 4 of 8) L1MCa|LINE|L1 103147 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 150.5-22 chr12 130558492 130558920 + 0.75 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 69750 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 113.5-4 chr1 111251207 111251589 + 0.75 NA Intergenic Intergenic 21662 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 187-10 chr15 96660035 96660560 + 0.75 NA Intergenic MIR|SINE|MIR 121357 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 244.75-11 chr16 53832198 53832596 + 0.75 NA intron (NM_001363899, intron 3 of 7) L1ME1|LINE|L1 128241 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 115.25-62 chr22 49664152 49664425 + 0.75 NA Intergenic Intergenic -6769 NR_110522 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 182.5-50 chr4 60723574 60723834 + 0.75 NA Intergenic Intergenic -198915 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 206.25-33 chr6 36143617 36144119 + 0.75 NA non-coding (NR_072996, exon 10 of 10) non-coding (NR_072996, exon 10 of 10) 13355 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 198-6 chr10 80339784 80340272 + 0.75 NA intron (NM_001370157, intron 4 of 5) intron (NM_001370157, intron 4 of 5) -4717 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 124.5-18 chr11 84204112 84204295 + 0.75 NA intron (NM_001142700, intron 1 of 19) AluSp|SINE|Alu 69077 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 177.75-45 chr5 156971633 156971969 + 0.75 NA Intergenic Intergenic -8575 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 126-37 chr17 68139346 68139776 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger 38006 NR_027418 100499466 Hs.591212 NR_027418 LINC00674 - long intergenic non-protein coding RNA 674 ncRNA 128.5-20 chr13 35871329 35871596 + 0.75 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -15601 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 129.5-9 chr10 17829859 17830074 + 0.75 NA intron (NM_002438, intron 3 of 29) intron (NM_002438, intron 3 of 29) -15141 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 113.75-22 chr10 83209513 83209711 + 0.75 NA Intergenic MER34B|LTR|ERV1 467477 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 130-23 chr15 86802044 86802386 + 0.75 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -130665 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 134-63 chr5 152980115 152980416 + 0.75 NA Intergenic HAL1|LINE|L1 -7916 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 137.75-24 chr14 64532917 64533148 + 0.75 NA 3' UTR (NM_014950, exon 3 of 3) 3' UTR (NM_014950, exon 3 of 3) 7336 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 113.5-36 chr14 65397313 65397553 + 0.75 NA Intergenic MER6A|DNA|TcMar-Tigger -13159 NM_004480 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 151.75-75 chr8 84660469 84660782 + 0.75 NA intron (NM_001354308, intron 3 of 9) L1MD|LINE|L1 -45302 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 128.25-84 chr8 123636247 123636468 + 0.75 NA Intergenic L2b|LINE|L2 17444 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 244.5-9 chr14 72312371 72312868 + 0.75 NA intron (NM_001370288, intron 2 of 16) MIRc|SINE|MIR -204201 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 126-91 chr8 136985208 136985449 + 0.75 NA Intergenic MIRb|SINE|MIR 428260 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 125.75-15 chr11 97490781 97491043 + 0.75 NA Intergenic L2a|LINE|L2 982487 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 118.75-6 chr1 114578805 114579079 + 0.75 NA intron (NM_005872, intron 2 of 6) MIRc|SINE|MIR 2673 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 125.75-75 chr8 103343919 103344283 + 0.75 NA Intergenic L1ME3G|LINE|L1 -27437 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 147.5-23 chr13 58561790 58562169 + 0.75 NA Intergenic Intergenic -328862 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 198-2 chr1 89119005 89119475 + 0.75 NA intron (NM_004120, intron 4 of 10) L2a|LINE|L2 6874 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 173-57 chr9 105200260 105200521 + 0.75 NA Intergenic L1MC5a|LINE|L1 -44215 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 175.25-8 chr10 107543725 107544116 + 0.75 NA Intergenic Intergenic -379214 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 150.75-41 chr20 33662355 33662757 + 0.75 NA intron (NM_080825, intron 1 of 1) intron (NM_080825, intron 1 of 1) 229 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 191.75-3 chr10 73409750 73410091 + 0.75 NA intron (NM_004034, intron 1 of 13) L1PB3|LINE|L1 4138 NM_004034 310 Hs.631827 NM_001156 ENSG00000138279 ANXA7 ANX7|SNX|SYNEXIN annexin A7 protein-coding 162.25-35 chr5 60235671 60235956 + 0.75 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 136850 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 134.75-41 chr20 43825036 43825255 + 0.75 NA Intergenic MIRb|SINE|MIR -69573 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 156-52 chr5 9457612 9457904 + 0.75 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -53575 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 114.5-25 chr16 9104508 9104715 + 0.75 NA intron (NM_014117, intron 3 of 3) intron (NM_014117, intron 3 of 3) 12967 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 124.25-38 chr17 41861819 41862010 + 0.75 NA intron (NM_018143, intron 1 of 1) intron (NM_018143, intron 1 of 1) 3509 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 201-21 chr17 19692330 19692791 + 0.75 NA intron (NR_135625, intron 12 of 15) L1M4|LINE|L1 24024 NM_001099646 146802 Hs.126830 NM_152908 ENSG00000180638 SLC47A2 MATE2|MATE2-B|MATE2-K|MATE2K solute carrier family 47 member 2 protein-coding 139.5-66 chr4 13063836 13064070 + 0.75 NA Intergenic L1MA9|LINE|L1 420387 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 184-10 chr10 108625341 108625721 + 0.75 NA Intergenic Intergenic -556238 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 216.25-16 chr16 65486832 65487477 + 0.75 NA intron (NR_027755, intron 2 of 8) AluYc3|SINE|Alu 89146 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 187.75-4 chr11 69410921 69411336 + 0.75 NA Intergenic AluSc|SINE|Alu -14527 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 120.5-67 chr3 127933165 127933345 + 0.75 NA intron (NM_001370224, intron 4 of 6) L1M4a2|LINE|L1 18023 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 187.5-67 chr6 39410760 39411161 + 0.75 NA intron (NM_001289024, intron 2 of 9) MLT1M|LTR|ERVL-MaLR 20430 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 129.5-44 chr2 104206977 104207200 + 0.75 NA Intergenic Intergenic 201244 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 164.75-23 chr14 61077569 61077853 + 0.75 NA intron (NR_033344, intron 15 of 16) intron (NR_033344, intron 15 of 16) -96021 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 122.75-27 chr17 12707937 12708187 + 0.75 NA intron (NM_001146312, intron 2 of 13) intron (NM_001146312, intron 2 of 13) -1927 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 115-57 chr3 99096014 99096241 + 0.75 NA Intergenic Intergenic -194432 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 228.75-32 chr5 92508784 92509208 + 0.75 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1062347 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 214.25-29 chr3 178681207 178681642 + 0.75 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 122574 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 222.75-38 chr5 161737975 161738396 + 0.75 NA Intergenic Intergenic 52464 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 169-31 chr2 226261786 226262225 + 0.75 NA Intergenic Intergenic 119211 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 120-42 chr2 8726470 8726781 + 0.75 NA intron (NM_001348743, intron 28 of 28) Tigger3a|DNA|TcMar-Tigger 44569 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 134.25-40 chr2 132655733 132656012 + 0.75 NA intron (NM_144586, intron 2 of 2) intron (NM_144586, intron 2 of 2) 14333 NM_144586 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 121.75-22 chr15 60631643 60631916 + 0.75 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -4249 NM_002943 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 150.5-26 chr14 28324870 28325172 + 0.75 NA Intergenic Intergenic 440298 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 176.5-31 chr15 59718885 59719137 + 0.75 NA Intergenic Intergenic -29691 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 189.5-53 chr6 66564813 66565192 + 0.75 NA Intergenic HUERS-P3b-int|LTR|ERV1 777123 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 150.5-8 chr11 20979248 20979517 + 0.75 NA intron (NM_201551, intron 12 of 18) (GT)n|Simple_repeat|Simple_repeat 309796 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 144-14 chr11 81884641 81884881 + 0.75 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) 6075 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 123-25 chr15 99040276 99040496 + 0.75 NA Intergenic HAL1M8|LINE|L1 25682 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 158.75-44 chr3 83998178 83998437 + 0.75 NA Intergenic Intergenic 871268 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 228.75-19 chr18 9287309 9287732 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie -47253 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 125.5-110 chr6 54769919 54770112 + 0.75 NA Intergenic Intergenic -76756 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 125.25-36 chr19 28662446 28662665 + 0.75 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 55867 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 144.5-49 chr18 5485145 5485424 + 0.75 NA intron (NM_001281535, intron 4 of 21) L1MA4|LINE|L1 55272 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 144.75-8 chr1 235102206 235102438 + 0.75 NA Intergenic MLT1K|LTR|ERVL-MaLR 25615 NR_002956 677802 Hs.744743 NR_002956 ENSG00000207181 SNORA14B ACA14b small nucleolar RNA, H/ACA box 14B snoRNA 173.5-40 chr2 15671253 15671711 + 0.75 NA Intergenic MIRb|SINE|MIR -19300 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 207-25 chr2 29964629 29965244 + 0.75 NA Intergenic MIRb|SINE|MIR -43350 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 122.25-98 chr9 27927147 27927370 + 0.75 NA Intergenic L2c|LINE|L2 -353392 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 112.75-44 chr2 10936125 10936310 + 0.75 NA Intergenic Intergenic 24283 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 123.5-22 chr11 88367040 88367317 + 0.75 NA Intergenic Intergenic -29442 NM_001814 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 178.25-38 chr3 146082041 146082453 + 0.75 NA intron (NM_182943, intron 11 of 19) intron (NM_182943, intron 11 of 19) -13062 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 168.25-32 chr2 155066640 155066896 + 0.75 NA Intergenic L1PB3|LINE|L1 368073 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 130.5-105 chr9 26852723 26852965 + 0.75 NA intron (NM_001167575, intron 5 of 5) L2a|LINE|L2 39958 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 125.5-113 chr6 109897439 109897719 + 0.75 NA Intergenic MER83B|LTR|ERV1 -80677 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 207.25-21 chr4 86807077 86807505 + 0.75 NA intron (NM_080685, intron 44 of 47) intron (NM_080685, intron 44 of 47) 42093 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 164.75-65 chr7 107263790 107264226 + 0.75 NA intron (NM_181733, intron 14 of 20) intron (NM_181733, intron 14 of 20) 95005 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 229.5-18 chr14 47445861 47446275 + 0.75 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -102822 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 145.75-8 chr13 75564305 75564569 + 0.75 NA intron (NM_006002, intron 3 of 8) AluY|SINE|Alu 14687 NM_006002 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 134.75-4 chr1 108773237 108773473 + 0.75 NA intron (NM_007269, intron 7 of 18) MER6A|DNA|TcMar-Tigger 26681 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 143-49 chr3 86780633 86780892 + 0.75 NA Intergenic Intergenic 210387 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 113.5-80 chr3 153529343 153529599 + 0.75 NA intron (NR_146713, intron 5 of 6) intron (NR_146713, intron 5 of 6) 44976 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 144.25-44 chr20 41899212 41899588 + 0.75 NA Intergenic L2|LINE|L2 -281023 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 147.5-26 chr14 61901330 61901659 + 0.75 NA intron (NM_001367661, intron 2 of 8) MIR|SINE|MIR -26201 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 126-69 chr5 115539570 115539780 + 0.75 NA intron (NM_020177, intron 2 of 2) L2b|LINE|L2 5100 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 121.25-73 chr7 81979843 81980155 + 0.75 NA intron (NM_000722, intron 24 of 38) intron (NM_000722, intron 24 of 38) -29178 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 170.25-10 chr11 110363964 110364306 + 0.75 NA intron (NR_135100, intron 1 of 3) intron (NR_135100, intron 1 of 3) 9021 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 134.75-8 chr10 62283636 62284034 + 0.75 NA Intergenic Intergenic -14991 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 116-34 chr18 55011437 55011612 + 0.75 NA Intergenic AluJb|SINE|Alu -52063 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 206.5-19 chr14 66222644 66223033 + 0.75 NA Intergenic Intergenic -263533 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 127.5-60 chr2 62348367 62348554 + 0.75 NA Intergenic MER39B|LTR|ERV1 132939 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 187-64 chr8 137582461 137582877 + 0.75 NA Intergenic Intergenic -169081 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 131.25-39 chr18 53622738 53622941 + 0.75 NA Intergenic L1MC4|LINE|L1 -41780 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 157.5-67 chr3 97280307 97280596 + 0.75 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -159156 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 114.25-50 chr19 57466904 57467083 + 0.75 NA Intergenic L1M1|LINE|L1 -10254 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 113.75-80 chr4 43604584 43604776 + 0.75 NA Intergenic Intergenic -112137 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 168-62 chr7 52478351 52478658 + 0.75 NA Intergenic LTR9D|LTR|ERV1 -557129 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 180.25-26 chr19 40972719 40972989 + 0.75 NA Intergenic LTR52|LTR|ERVL -18428 NM_000767 1555 Hs.1360 NM_000767 ENSG00000197408 CYP2B6 CPB6|CYP2B|CYP2B7|CYP2B7P|CYPIIB6|EFVM|IIB1|P450 cytochrome P450 family 2 subfamily B member 6 protein-coding 124.25-50 chr2 103777148 103777453 + 0.75 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 631032 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 113.25-62 chr19 46393473 46393678 + 0.75 NA Intergenic AluJo|SINE|Alu 19989 NM_032040 83987 Hs.97876 NM_032040 ENSG00000169515 CCDC8 3M3|PPP1R20|p90 coiled-coil domain containing 8 protein-coding 173-21 chr16 59615447 59615995 + 0.75 NA Intergenic Intergenic 139470 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 161.75-69 chr9 110563226 110563464 + 0.75 NA intron (NM_153366, intron 1 of 47) intron (NM_153366, intron 1 of 47) 16396 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 198-15 chr14 43210601 43210957 + 0.75 NA Intergenic Intergenic 1296504 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 189.5-37 chr22 30600632 30600959 + 0.75 NA intron (NM_001282327, intron 2 of 16) AluY|SINE|Alu 6218 NM_001282327 23481 Hs.517543 NM_014303 ENSG00000100029 PES1 NOP7|PES pescadillo ribosomal biogenesis factor 1 protein-coding 190.75-24 chr17 54480533 54480898 + 0.75 NA Intergenic Intergenic -419976 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 144-52 chr4 66639028 66639294 + 0.75 NA Intergenic Intergenic 362337 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 132-51 chr3 142501657 142502072 + 0.75 NA intron (NM_001354579, intron 29 of 45) AluSz6|SINE|Alu -53802 NM_001282859 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 121.5-100 chr6 39450128 39450387 + 0.75 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -18867 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 136.75-43 chr2 15534522 15534978 + 0.75 NA intron (NR_052013, intron 8 of 50) L1ME2z|LINE|L1 26584 NR_052013 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 148.5-12 chr11 68859630 68859902 + 0.75 NA Intergenic AluSz|SINE|Alu -17835 NM_001031847 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 182.25-43 chr5 39503314 39503645 + 0.75 NA Intergenic Intergenic -16952 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 118.5-13 chr1 235890490 235890777 + 0.75 NA Intergenic Intergenic -6920 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 124-2 chr1 94068327 94068624 + 0.75 NA intron (NM_000350, intron 11 of 49) intron (NM_000350, intron 11 of 49) 52673 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 121.25-88 chr9 19411977 19412143 + 0.75 NA intron (NM_001010887, intron 1 of 5) intron (NM_001010887, intron 1 of 5) 3051 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 123.5-2 chr1 35082113 35082322 + 0.75 NA intron (NM_001319955, intron 1 of 8) L1MEg|LINE|L1 2832 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 132.25-87 chr8 87587367 87587560 + 0.75 NA Intergenic Intergenic 286552 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 128.25-62 chr5 63903466 63903759 + 0.75 NA Intergenic Intergenic 58680 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 156.5-75 chr7 68596300 68596671 + 0.75 NA Intergenic Intergenic 576232 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 152.25 chr1 49608387 49608731 + 0.75 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -136474 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 227.5-35 chr3 141226286 141226811 + 0.75 NA Intergenic L1ME1|LINE|L1 -5277 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 136.75-57 chr21 28189167 28189395 + 0.75 NA intron (NR_126012, intron 3 of 5) L1MA1|LINE|L1 39386 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 116.75-9 chr10 66373004 66373236 + 0.75 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -552916 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 190.25-36 chr4 30934953 30935282 + 0.75 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 214748 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 188-37 chr6 51954677 51955124 + 0.75 NA intron (NM_138694, intron 36 of 66) intron (NM_138694, intron 36 of 66) 132713 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 204.75-38 chr5 66296371 66296710 + 0.75 NA Intergenic L1MC2|LINE|L1 -87094 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 136.5-9 chr1 233977679 233977887 + 0.75 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 73107 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 127.25-89 chr7 37676809 37676999 + 0.75 NA Intergenic L1ME3A|LINE|L1 -6862 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 122.25-85 chr7 5065181 5065526 + 0.75 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -6707 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 156.25-52 chr3 158031390 158031742 + 0.75 NA Intergenic Intergenic 74597 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 114.25-11 chr10 89441767 89442007 + 0.75 NA intron (NM_213606, intron 4 of 7) intron (NM_213606, intron 4 of 7) -14104 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 131-67 chr7 27459583 27459898 + 0.75 NA Intergenic Intergenic -156234 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 123.5-100 chr7 106917606 106917818 + 0.75 NA Intergenic Intergenic 52233 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 145.5-96 chr9 3998240 3998507 + 0.75 NA intron (NM_001042413, intron 4 of 10) L1MC5a|LINE|L1 99727 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 141.75-15 chr12 10796615 10796961 + 0.75 NA Intergenic Intergenic 5839 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 196.25-22 chr15 92821595 92821951 + 0.75 NA Intergenic MIR|SINE|MIR 26289 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 113.5-86 chr4 66884211 66884463 + 0.75 NA Intergenic Intergenic 537663 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 185-28 chr22 35284606 35284899 + 0.75 NA intron (NM_001003681, intron 6 of 10) MER47A|DNA|TcMar-Tigger -14523 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 118.25-39 chr17 51741530 51741712 + 0.75 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 306194 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 123-32 chr20 35552819 35553003 + 0.75 NA intron (NM_015966, intron 7 of 12) L2a|LINE|L2 10833 NM_198398 51614 Hs.472558 NM_015966 ENSG00000125991 ERGIC3 C20orf47|C2orf47|CGI-54|Erv46|NY-BR-84|PRO0989|SDBCAG84|dJ477O4.2 ERGIC and golgi 3 protein-coding 118-14 chr11 88557959 88558230 + 0.75 NA intron (NM_001143831, intron 7 of 8) L2c|LINE|L2 53518 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 218.5-33 chr3 11747034 11747469 + 0.75 NA Intergenic AluSx|SINE|Alu -26712 NM_001284390 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 131.75-2 chr1 10823485 10823832 + 0.75 NA Intergenic AluSz|SINE|Alu -27012 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 113.5-19 chr10 72580793 72581002 + 0.75 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 45182 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 150.75-73 chr8 135450835 135451183 + 0.75 NA Intergenic Intergenic -6447 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 123.75-72 chr3 89032568 89032796 + 0.75 NA Intergenic Intergenic -74939 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 172-31 chr4 37849524 37849970 + 0.75 NA intron (NM_018290, intron 11 of 13) intron (NM_018290, intron 11 of 13) 23061 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 113.75-18 chr10 61214725 61215015 + 0.75 NA Intergenic Intergenic 198595 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 245.25-17 chr2 208935868 208936362 + 0.75 NA Intergenic Charlie2b|DNA|hAT-Charlie 393473 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 148-4 chr10 20520144 20520507 + 0.75 NA Intergenic Intergenic -31645 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 130.5-2 chr1 27870874 27871063 + 0.75 NA Intergenic AluSp|SINE|Alu -1575 NM_001039477 9473 Hs.10649 NM_004848 ENSG00000130775 THEMIS2 C1orf38|ICB-1|ICB1 thymocyte selection associated family member 2 protein-coding 225.25-9 chr2 21207969 21208507 + 0.75 NA Intergenic LTR40b|LTR|ERVL 84252 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 127-25 chr12 79819829 79820200 + 0.75 NA intron (NM_001244990, intron 9 of 24) L1ME3Cz|LINE|L1 93897 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 175.25-22 chr17 13841434 13841765 + 0.75 NA Intergenic L2b|LINE|L2 -182899 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 119-15 chr12 94888471 94888708 + 0.75 NA Intergenic L1MC5|LINE|L1 54135 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 121.25-65 chr6 73149963 73150254 + 0.75 NA intron (NM_001160132, intron 10 of 13) L1MD1|LINE|L1 -6594 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 202.25-25 chr3 34499565 34500012 + 0.75 NA Intergenic L2a|LINE|L2 701158 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 115.75-16 chr12 25404794 25404978 + 0.75 NA Intergenic L1MD1|LINE|L1 148397 NM_001256266 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 193-46 chr6 47246133 47246567 + 0.75 NA intron (NM_014452, intron 4 of 5) intron (NM_014452, intron 4 of 5) 63555 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 114.25-40 chr17 63027844 63028116 + 0.75 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 61745 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 147.5-3 chr1 89150544 89150917 + 0.75 NA intron (NM_207398, intron 5 of 10) intron (NM_207398, intron 5 of 10) -24616 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 120-57 chr22 26980666 26980936 + 0.75 NA Intergenic L2c|LINE|L2 77509 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 135.25-56 chr20 63263513 63263733 + 0.75 NA Intergenic AluSx1|SINE|Alu -9160 NM_152864 128414 Hs.46627 NM_152864 ENSG00000101198 NKAIN4 C20orf58|FAM77A|bA261N11.2 sodium/potassium transporting ATPase interacting 4 protein-coding 168-43 chr2 150748453 150748787 + 0.75 NA Intergenic L1MCc|LINE|L1 119723 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 131.25-66 chr4 53030175 53030410 + 0.75 NA intron (NM_152540, intron 5 of 8) L1ME1|LINE|L1 167975 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 127.75-3 chr1 58381918 58382215 + 0.75 NA Intergenic LTR16E1|LTR|ERVL -131519 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 138.5-98 chr7 106748699 106749000 + 0.75 NA Intergenic L1MA9|LINE|L1 -87691 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 151-19 chr15 73791602 73791971 + 0.75 NA Intergenic Intergenic 23572 NR_120352 101929221 NR_120352 INSYN1-AS1 C15orf59-AS1 INSYN1 antisense RNA 1 ncRNA 125.5-57 chr18 44250058 44250347 + 0.75 NA Intergenic Intergenic 281495 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 124.25-12 chr1 245741861 245742204 + 0.75 NA Intergenic Intergenic -507515 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 218.75-9 chr11 105677536 105677860 + 0.75 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 66992 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 174.25-14 chr10 108802190 108802721 + 0.75 NA Intergenic L5|LINE|RTE-X -733162 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 142.5-43 chr2 102674306 102674631 + 0.75 NA intron (NM_003048, intron 3 of 11) intron (NM_003048, intron 3 of 11) 54915 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 115.75-10 chr10 50848727 50848903 + 0.75 NA intron (NM_001370131, intron 2 of 11) intron (NM_001370131, intron 2 of 11) 36812 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 117.5-100 chr9 98193440 98193709 + 0.75 NA promoter-TSS (NM_052820) promoter-TSS (NM_052820) -937 NM_052820 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 115-35 chr18 6642313 6642514 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -87303 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 148.25-31 chr19 7565893 7566162 + 0.75 NA Intergenic Intergenic -29836 NM_001080429 57662 Hs.17686 NM_020902 ENSG00000076826 CAMSAP3 KIAA1543|NEZHA|PPP1R80 calmodulin regulated spectrin associated protein family member 3 protein-coding 207.5-56 chr7 27455004 27455388 + 0.75 NA Intergenic Intergenic -160778 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 120-38 chr17 5549955 5550136 + 0.75 NA intron (NM_014922, intron 5 of 15) L1M4|LINE|L1 34464 NM_014922 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 123.5-44 chr18 7043359 7043712 + 0.75 NA intron (NM_005559, intron 7 of 62) intron (NM_005559, intron 7 of 62) 74262 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 145.5-66 chr3 192859970 192860381 + 0.75 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 57681 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 199-34 chr4 81335547 81335970 + 0.75 NA Intergenic Intergenic -120536 NM_001363401 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 186.5-34 chr2 144589886 144590193 + 0.75 NA Intergenic Intergenic -65595 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 154-21 chr14 59635707 59636023 + 0.75 NA intron (NM_021136, intron 3 of 8) MER6B|DNA|TcMar-Tigger -5051 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 208-45 chr9 134744592 134745087 + 0.75 NA intron (NM_001278074, intron 11 of 65) intron (NM_001278074, intron 11 of 65) -91996 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 196.25-8 chr11 32208917 32209543 + 0.75 NA Intergenic MLT1J|LTR|ERVL-MaLR -65318 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 161.5-62 chr3 155233038 155233362 + 0.75 NA Intergenic Intergenic -7745 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 132.5-61 chr2 239136575 239136891 + 0.75 NA intron (NM_006037, intron 9 of 26) L1M2|LINE|L1 -50807 NR_039643 100616493 NR_039643 ENSG00000264810 MIR4441 - microRNA 4441 ncRNA 213.5-28 chr2 133223558 133223989 + 0.75 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -42422 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 176.5-25 chr14 19927171 19927589 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 6773 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 209.25-55 chr9 77614441 77614940 + 0.75 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 33632 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 129-4 chr1 102418685 102418955 + 0.75 NA Intergenic Intergenic -421586 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 131.75-43 chr2 55398250 55398582 + 0.75 NA intron (NM_001254943, intron 2 of 33) intron (NM_001254943, intron 2 of 33) 21440 NM_001135597 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 131.75-87 chrX 23329864 23330193 + 0.75 NA Intergenic L1ME4a|LINE|L1 -4821 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 173.25-52 chr5 30098016 30098342 + 0.75 NA Intergenic L1MEi|LINE|L1 217619 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 223.5-77 chrUn_KI270438v1 110183 110623 + 0.75 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 124-64 chr6 60687466 60687699 + 0.75 NA Intergenic Intergenic -886548 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 122.75-8 chr1 186944338 186944655 + 0.75 NA intron (NM_024420, intron 10 of 17) intron (NM_024420, intron 10 of 17) 115547 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 120.5-85 chr5 123182762 123183002 + 0.75 NA intron (NM_001136239, intron 7 of 7) intron (NM_001136239, intron 7 of 7) -92566 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 133-33 chr18 67361632 67361862 + 0.75 NA Intergenic Intergenic -154799 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 122.75-34 chr17 80571738 80572044 + 0.75 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 27053 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 134.25-81 chr6 162308002 162308290 + 0.75 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -418986 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 143-20 chr12 64675169 64675546 + 0.75 NA intron (NR_040718, intron 1 of 3) AluJb|SINE|Alu -52752 NR_037515 100500856 NR_037515 ENSG00000266016 MIR548Z - microRNA 548z ncRNA 169-58 chrX 151949161 151949543 + 0.75 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 9306 NR_029638 407009 NR_029638 ENSG00000284363 MIR224 MIRN224|miRNA224 microRNA 224 ncRNA 171-21 chr14 37565737 37566133 + 0.75 NA Intergenic Intergenic 29314 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 195.5-59 chr4 36387687 36388026 + 0.75 NA Intergenic Intergenic 38572 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 123.5-16 chr10 99862171 99862369 + 0.75 NA Intergenic L1MA8|LINE|L1 51822 NM_001318327 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 168.75-12 chr14 92203068 92203357 + 0.75 NA Intergenic LTR16C|LTR|ERVL 81243 NM_001322272 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 216.5-13 chr14 55881301 55881717 + 0.75 NA Intergenic LTR81C|LTR|Gypsy -84835 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 113.5-91 chr4 127041168 127041361 + 0.75 NA Intergenic L1PA16|LINE|L1 -591693 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 117.75-76 chr7 31960071 31960375 + 0.75 NA intron (NM_001322059, intron 3 of 17) L1MC4|LINE|L1 110184 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 152-12 chr10 84238235 84238567 + 0.75 NA intron (NM_015613, intron 1 of 3) MamRep4096|DNA|hAT-Tip100 3145 NM_015613 26103 Hs.226000 NM_015613 ENSG00000148602 LRIT1 FIGLER9|LRRC21|PAL leucine rich repeat, Ig-like and transmembrane domains 1 protein-coding 116.75-24 chr14 62591663 62591897 + 0.75 NA Intergenic Intergenic -451807 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 154.5-15 chr10 91359362 91359672 + 0.75 NA intron (NR_024467, intron 3 of 4) intron (NR_024467, intron 3 of 4) -49718 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 168.75-35 chr3 35259380 35259716 + 0.75 NA intron (NR_110817, intron 2 of 3) L1MDa|LINE|L1 134475 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 126-62 chr3 106346385 106346604 + 0.75 NA Intergenic L1MC3|LINE|L1 -477093 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 127.5-15 chr10 25217373 25217622 + 0.75 NA intron (NM_020752, intron 1 of 10) Arthur1C|DNA|hAT-Tip100 -41221 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 138-74 chr7 21378433 21378728 + 0.75 NA Intergenic L1MEc|LINE|L1 -49503 NM_003112 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 117.5-30 chr16 7849378 7849640 + 0.75 NA Intergenic Intergenic 516664 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 116.5-107 chr7 29527886 29528179 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -35803 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 172.5-60 chr5 32270688 32271182 + 0.75 NA exon (NM_001040446, exon 5 of 16) exon (NM_001040446, exon 5 of 16) 42004 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 121.25-91 chr9 129499616 129499793 + 0.75 NA intron (NR_038955, intron 2 of 4) AluSp|SINE|Alu 11044 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 132.25-58 chr3 27530951 27531145 + 0.75 NA Intergenic MER5B|DNA|hAT-Charlie -46664 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 166-25 chr15 70186646 70187066 + 0.75 NA Intergenic L2c|LINE|L2 -88939 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 137.5-7 chr10 24831143 24831423 + 0.75 NA Intergenic L1MEc|LINE|L1 -107396 NM_001367447 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 124.25-72 chr6 71701225 71701486 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -185348 NM_014989 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 186.25-24 chr18 51005188 51005557 + 0.75 NA Intergenic HERVL-int|LTR|ERVL -24841 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 125.25-71 chr5 167886210 167886464 + 0.75 NA intron (NM_001368145, intron 2 of 26) HAL1|LINE|L1 131408 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 117.75-28 chr16 3883733 3883927 + 0.75 NA Intergenic Intergenic -3117 NM_004380 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 147-51 chr22 35116492 35116883 + 0.75 NA Intergenic Intergenic 50529 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 182.75-14 chr16 53807085 53807428 + 0.75 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 103100 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 245-3 chr1 164899146 164899563 + 0.75 NA Intergenic L1PREC2|LINE|L1 -124713 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 124.75-46 chr2 123723132 123723381 + 0.75 NA Intergenic Intergenic 301918 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 135-61 chr5 132133546 132133796 + 0.75 NA Intergenic L1MC1|LINE|L1 -51205 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 171.5-48 chr2 225692428 225692701 + 0.75 NA intron (NM_001371273, intron 7 of 7) intron (NM_001371273, intron 7 of 7) 291678 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 138.75-56 chr4 164896112 164896383 + 0.75 NA 3' UTR (NM_001297550, exon 3 of 3) 3' UTR (NM_001297550, exon 3 of 3) 19069 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 221-46 chr8 24315669 24316128 + 0.75 NA intron (NM_014265, intron 6 of 22) L1M4c|LINE|L1 21829 NM_014265 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 145-11 chr12 44580628 44580867 + 0.75 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 294914 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 126.5-79 chr4 55651593 55651824 + 0.75 NA Intergenic AluSz6|SINE|Alu -14915 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 170-16 chr18 46099659 46100102 + 0.75 NA intron (NM_001001937, intron 1 of 12) intron (NM_001001937, intron 1 of 12) -1527 NM_001257335 498 Hs.298280 NM_004046 ENSG00000152234 ATP5F1A ATP5A|ATP5A1|ATP5AL2|ATPM|COXPD22|HEL-S-123m|MC5DN4|MOM2|OMR|ORM|hATP1 ATP synthase F1 subunit alpha protein-coding 146.75-11 chr12 76036070 76036428 + 0.75 NA TTS (NM_004537) TTS (NM_004537) -4473 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 129.25-36 chr17 62607594 62607895 + 0.75 NA intron (NM_001284363, intron 18 of 19) intron (NM_001284363, intron 18 of 19) -19926 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 144.75-60 chr3 182795909 182796243 + 0.75 NA intron (NM_014616, intron 1 of 29) intron (NM_014616, intron 1 of 29) 2572 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 149.5-15 chr11 112247069 112247403 + 0.75 NA TTS (NM_001145024) TTS (NM_001145024) -13029 NR_133566 100132686 Hs.650455 NR_133566 ENSG00000268472 LOC100132686 - uncharacterized LOC100132686 ncRNA 144.5-47 chr16 61508406 61508636 + 0.75 NA Intergenic Intergenic -452755 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 121.25-13 chr11 99514954 99515298 + 0.75 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -41019 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 152-40 chr22 33002494 33002825 + 0.75 NA intron (NM_003490, intron 2 of 13) AluSc8|SINE|Alu 4162 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 198.75-6 chr11 14961042 14961532 + 0.75 NA Intergenic Intergenic 10999 NM_001033952 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 179.25-7 chr10 59609512 59609918 + 0.75 NA Intergenic Intergenic 100176 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 116.5-9 chr10 14921485 14921706 + 0.75 NA intron (NR_146961, intron 12 of 14) L2|LINE|L2 32501 NM_001350967 64421 Hs.655932 NM_022487 ENSG00000152457 DCLRE1C A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C DNA cross-link repair 1C protein-coding 169.5-46 chr2 234027612 234028052 + 0.75 NA Intergenic L2b|LINE|L2 -22870 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 140.5-20 chr13 50016513 50016878 + 0.75 NA 3' UTR (NM_213590, exon 2 of 2) 3' UTR (NM_213590, exon 2 of 2) 1251 NM_199464 283518 Hs.660161 NM_173605 ENSG00000198553 KCNRG DLTET potassium channel regulator protein-coding 122.5-41 chr18 10476240 10476575 + 0.75 NA intron (NM_153000, intron 3 of 4) intron (NM_153000, intron 3 of 4) 21772 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 218-29 chr22 28325936 28326239 + 0.75 NA intron (NM_001145418, intron 2 of 22) L1ME1|LINE|L1 -133782 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 132.5-48 chr2 10217327 10217742 + 0.75 NA Intergenic Intergenic -24863 NR_036222 100422929 NR_036222 ENSG00000265418 MIR4261 - microRNA 4261 ncRNA 113-41 chr19 38137491 38137641 + 0.75 NA intron (NM_015073, intron 10 of 21) FLAM_C|SINE|Alu -25530 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 163-12 chr14 64724704 64724996 + 0.75 NA intron (NM_001308147, intron 1 of 16) MIR|SINE|MIR 20426 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 182 chr1 18246208 18246613 + 0.75 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 138612 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 171-15 chr12 3662621 3662947 + 0.75 NA intron (NM_001144958, intron 7 of 19) intron (NM_001144958, intron 7 of 19) 90325 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 192.25-20 chr18 21945267 21945624 + 0.75 NA Intergenic Intergenic -114039 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 141-77 chr7 79427523 79427784 + 0.75 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -25304 NR_038345 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 167-26 chr17 61577265 61577522 + 0.75 NA Intergenic AluY|SINE|Alu 13826 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 143.75-62 chr3 96089220 96089664 + 0.75 NA Intergenic Intergenic -270522 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 154.5-51 chr22 50644919 50645178 + 0.75 NA Intergenic Intergenic -16896 NM_001085425 410 Hs.88251 NM_000487 ENSG00000100299 ARSA ASA|MLD arylsulfatase A protein-coding 162.5-53 chr22 28669569 28669877 + 0.75 NA intron (NM_001145418, intron 1 of 22) intron (NM_001145418, intron 1 of 22) 10142 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 192.25-13 chr11 28386748 28387054 + 0.75 NA Intergenic L1MB2|LINE|L1 90647 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 134-18 chr11 94800405 94800722 + 0.75 NA intron (NM_130847, intron 3 of 12) intron (NM_130847, intron 3 of 12) 32207 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 120.75-69 chr3 169551293 169551581 + 0.75 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 103570 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 116.5-112 chr7 71883618 71883821 + 0.75 NA intron (NM_001363460, intron 4 of 5) LTR47A|LTR|ERVL 453672 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 126.75-74 chr5 84504885 84505152 + 0.75 NA Intergenic Intergenic -120138 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 226.75-16 chr21 26445724 26446112 + 0.75 NA intron (NR_135515, intron 1 of 3) MamGypsy2-I|LTR|Gypsy 39975 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 120.75-97 chr8 102196010 102196308 + 0.75 NA Intergenic Intergenic 42672 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 136-49 chr3 77350115 77350385 + 0.75 NA intron (NM_001290039, intron 2 of 26) AluJb|SINE|Alu 252238 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 161.5-35 chr15 44141998 44142413 + 0.75 NA intron (NM_001286490, intron 1 of 15) L3|LINE|CR1 52241 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 192.75-41 chr6 145884232 145884774 + 0.75 NA TTS (NM_173082) TTS (NM_173082) 69627 NR_038245 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 127.25-34 chr15 66913251 66913508 + 0.75 NA Intergenic Intergenic 43136 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 175.25-35 chr20 31548182 31548456 + 0.75 NA intron (NM_178580, intron 4 of 12) intron (NM_178580, intron 4 of 12) 24944 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 115.25-21 chr11 106557484 106557730 + 0.75 NA Intergenic Intergenic 306200 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 220.5-8 chr10 96350155 96350638 + 0.75 NA intron (NM_001040102, intron 1 of 3) AluSx4|SINE|Alu 6763 NM_001284326 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 151.75-7 chr10 50811927 50812211 + 0.75 NA intron (NM_001370131, intron 9 of 11) intron (NM_001370131, intron 9 of 11) 72133 NM_001079516 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 250-24 chr5 67348676 67349121 + 0.75 NA Intergenic L1M2|LINE|L1 -152099 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 122.5-31 chr14 74105720 74106009 + 0.75 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) 20911 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 137.25-25 chr13 32534698 32534971 + 0.75 NA intron (NM_001278432, intron 2 of 9) intron (NM_001278432, intron 2 of 9) 3961 NM_014887 10443 Hs.507680 NM_014887 ENSG00000244754 N4BP2L2 92M18.3|CG005|CG016|PFAAP5 NEDD4 binding protein 2 like 2 protein-coding 153.25-41 chr4 95282722 95283138 + 0.75 NA intron (NM_003728, intron 3 of 15) MER39B|LTR|ERV1 191439 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 191.75-29 chr3 80322023 80322499 + 0.75 NA Intergenic Intergenic -442636 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 170.75-32 chr18 8873723 8874001 + 0.75 NA Intergenic Intergenic 156481 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 144.25-43 chr20 12171803 12172185 + 0.75 NA Intergenic Intergenic 254101 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 120.5-86 chr5 144587241 144587546 + 0.75 NA Intergenic Charlie1a|DNA|hAT-Charlie 382002 NM_001370486 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 176.25-70 chr8 101173891 101174319 + 0.75 NA Intergenic HSMAR2|DNA|TcMar-Mariner 31568 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 224.75-4 chr1 125179948 125180549 + 0.75 NA Intergenic Intergenic 3661136 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 224.75 chr1 68968812 68969362 + 0.75 NA Intergenic L2c|LINE|L2 -86811 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 154.75-18 chr15 67633690 67633938 + 0.75 NA intron (NM_001206804, intron 9 of 21) L4_C_Mam|LINE|RTE-X 84720 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 179-25 chr15 99528962 99529505 + 0.75 NA Intergenic L1MA9|LINE|L1 -36184 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 117.25-57 chr3 61031311 61031487 + 0.75 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 220053 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 190.75-8 chr10 53414430 53414723 + 0.75 NA Intergenic MIR|SINE|MIR -642876 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 151.25-2 chr1 195313879 195314231 + 0.75 NA Intergenic L1PREC2|LINE|L1 774660 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 115.5-33 chr17 10489983 10490312 + 0.75 NA intron (NR_125367, intron 2 of 10) L1M2|LINE|L1 -20588 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 125.25-29 chr16 6581210 6581464 + 0.75 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -192472 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 123.5-111 chr8 128427542 128427716 + 0.75 NA intron (NR_121672, intron 3 of 7) MIRb|SINE|MIR 137050 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 130.75-27 chr16 2839277 2839640 + 0.75 NA TTS (NR_026864) TTS (NR_026864) 3293 NR_026864 124221 Hs.434388 NM_178453 ENSG00000172460 PRSS30P Disp|TMPRSS8|TMPRSS8P serine protease 30, pseudogene pseudo 178.5-28 chr2 98772209 98772479 + 0.75 NA promoter-TSS (NR_126337) promoter-TSS (NR_126337) -446 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 114.5-67 chr3 117652242 117652494 + 0.75 NA Intergenic L1MC1|LINE|L1 38557 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 115-77 chr8 117749713 117750009 + 0.75 NA Intergenic MIR|SINE|MIR 171052 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 177-3 chr10 25734492 25734887 + 0.75 NA Intergenic L1MB5|LINE|L1 82977 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 116.5-46 chr17 62724238 62724625 + 0.75 NA intron (NM_001288780, intron 8 of 10) intron (NM_001288780, intron 8 of 10) 18225 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 188.75-27 chr3 21304484 21304830 + 0.75 NA Intergenic L1PB1|LINE|L1 -101069 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 141-46 chr2 231233956 231234267 + 0.75 NA intron (NM_001352757, intron 7 of 19) intron (NM_001352757, intron 7 of 19) 35480 NM_001271466 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 139-13 chr12 53702232 53702555 + 0.75 NA Intergenic Intergenic 25059 NR_026554 57658 Hs.156667 NM_020898 ENSG00000012822 CALCOCO1 Cocoa|PP13275|calphoglin calcium binding and coiled-coil domain 1 protein-coding 181-5 chr1 230567498 230567859 + 0.75 NA Intergenic L1MA4|LINE|L1 27905 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 176.5-54 chr20 7461556 7461972 + 0.75 NA Intergenic Tigger13a|DNA|TcMar-Tigger 90156 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 261.75-33 chrX 58440111 58440621 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr -529733 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 144.25-38 chr2 57586377 57586623 + 0.75 NA Intergenic L1MB5|LINE|L1 -321151 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 155-11 chr11 42348729 42349205 + 0.75 NA Intergenic MER47A|DNA|TcMar-Tigger -95277 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 144-19 chr12 49824109 49824408 + 0.75 NA intron (NM_001368048, intron 1 of 13) intron (NM_001368048, intron 1 of 13) 4155 NM_001368048 57701 Hs.143067 NM_001037806 ENSG00000167566 NCKAP5L Cep169|FP1193|KIAA1602 NCK associated protein 5 like protein-coding 126.75-6 chr1 119451127 119451326 + 0.75 NA Intergenic Intergenic 36076 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 137.75-23 chr14 55685805 55686056 + 0.75 NA Intergenic L2|LINE|L2 -80315 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 152.5-23 chr11 103605790 103606046 + 0.75 NA Intergenic Intergenic -243988 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 149.5-85 chr5 109049233 109049599 + 0.75 NA intron (NR_146155, intron 16 of 19) MLT1E2|LTR|ERVL-MaLR 124810 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 146-7 chr11 73987407 73987663 + 0.75 NA Intergenic AluSz6|SINE|Alu -4691 NM_003355 7351 Hs.80658 NM_003355 ENSG00000175567 UCP2 BMIQ4|SLC25A8|UCPH uncoupling protein 2 protein-coding 126.5-84 chr4 105671231 105671458 + 0.75 NA intron (NM_001242729, intron 13 of 13) intron (NM_001242729, intron 13 of 13) 37345 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 137.5-9 chr10 52986014 52986362 + 0.75 NA Intergenic Intergenic -214488 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 179-35 chr2 135022184 135022447 + 0.75 NA intron (NM_001282883, intron 1 of 7) intron (NM_001282883, intron 1 of 7) 1334 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 140.75-49 chr5 33578607 33578794 + 0.75 NA intron (NM_001324512, intron 16 of 21) intron (NM_001324512, intron 16 of 21) 137924 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 139.25-25 chr13 65434216 65434545 + 0.75 NA Intergenic Intergenic -431667 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 112.75-3 chr1 104156523 104156859 + 0.75 NA Intergenic Intergenic 83668 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 145-32 chr2 57432772 57433119 + 0.75 NA Intergenic Intergenic -474706 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 127-29 chr14 53415188 53415472 + 0.75 NA Intergenic Intergenic 261976 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 203.5-2 chr1 71159306 71159672 + 0.75 NA intron (NR_046217, intron 2 of 3) MIR1_Amn|SINE|MIR 78165 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 138.25-45 chr2 124619396 124619655 + 0.75 NA intron (NM_130773, intron 12 of 23) MLT2D|LTR|ERVL 594238 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 118.25-33 chr15 37156591 37156864 + 0.75 NA Intergenic Intergenic -55416 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 190.75-53 chr8 87396772 87397182 + 0.75 NA Intergenic Intergenic 477038 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 133.75-36 chr18 69997057 69997412 + 0.75 NA Intergenic Intergenic -40435 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 128.25-67 chr6 21686558 21686918 + 0.75 NA intron (NR_015410, intron 2 of 11) MER103C|DNA|hAT-Charlie 20325 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 187.5-38 chr2 124342732 124343237 + 0.75 NA intron (NM_130773, intron 3 of 23) LTR49-int|LTR|ERV1 317697 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 113.25-48 chr15 96302961 96303144 + 0.75 NA intron (NR_102744, intron 1 of 1) intron (NR_102744, intron 1 of 1) -22994 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 157.5-93 chr8 62308668 62308959 + 0.75 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 59959 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 142.5-19 chr12 26443731 26443998 + 0.75 NA intron (NM_002223, intron 45 of 56) intron (NM_002223, intron 45 of 56) 248291 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 115.5-20 chr11 111476432 111476711 + 0.75 NA intron (NM_017589, intron 5 of 5) intron (NM_017589, intron 5 of 5) -34031 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 181-20 chr12 41892195 41892591 + 0.75 NA Intergenic Intergenic 128204 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 162-14 chr17 14470926 14471332 + 0.75 NA Intergenic Intergenic 167389 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 116.25-25 chr15 58011700 58012026 + 0.75 NA intron (NM_170696, intron 3 of 11) intron (NM_170696, intron 3 of 11) 2160 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 114-28 chr13 22419575 22419746 + 0.75 NA Intergenic Intergenic 209375 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 169.75-47 chr4 133928850 133929102 + 0.75 NA Intergenic Intergenic 272813 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 222.25-3 chr1 107065831 107066265 + 0.75 NA Intergenic Intergenic 9374 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 122.25-94 chr8 118231242 118231526 + 0.75 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -119565 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 169.5-48 chr20 3570647 3571076 + 0.75 NA intron (NM_001207047, intron 11 of 24) L1MC5|LINE|L1 92538 NM_145762 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 116.5-57 chr2 60620421 60620701 + 0.75 NA Intergenic Intergenic -66907 NM_018014 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 236-27 chr4 158866267 158866921 + 0.75 NA intron (NM_001346043, intron 11 of 15) AluSq|SINE|Alu 60755 NM_001366843 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 134.75-11 chr10 82102943 82103285 + 0.75 NA intron (NR_163253, intron 2 of 10) L1MEf|LINE|L1 129806 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 114-89 chr8 92617830 92618007 + 0.75 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 37576 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 116-51 chr4 59838974 59839239 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy 825533 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 142.5-48 chr22 50373784 50374007 + 0.75 NA intron (NM_001242899, intron 2 of 22) AluSx1|SINE|Alu 30568 NM_001351646 9701 Hs.449098 NM_014678 ENSG00000100239 PPP6R2 KIAA0685|PP6R2|SAP190|SAPS2 protein phosphatase 6 regulatory subunit 2 protein-coding 172.25-32 chr2 104281645 104282172 + 0.75 NA Intergenic Intergenic 126424 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 131-56 chr5 118596500 118596843 + 0.75 NA intron (NR_104998, intron 1 of 4) intron (NR_104998, intron 1 of 4) 483 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 175.75-28 chr22 44379199 44379470 + 0.75 NA Intergenic L1MEg|LINE|L1 -63993 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 133.25-69 chr6 69612635 69612812 + 0.75 NA Intergenic L1ME3|LINE|L1 183743 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 180.5-77 chr6 110184163 110184475 + 0.75 NA intron (NM_015891, intron 1 of 14) L1MEg|LINE|L1 3892 NM_015891 51362 Hs.428147 NM_015891 ENSG00000168438 CDC40 EHB3|PRP17|PRPF17 cell division cycle 40 protein-coding 170-55 chr9 70489812 70490115 + 0.75 NA Intergenic Intergenic -75306 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 138.5-78 chr4 32610277 32610578 + 0.75 NA Intergenic L1M4|LINE|L1 259389 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 162-33 chr3 114347266 114347541 + 0.75 NA intron (NR_121662, intron 6 of 6) intron (NR_121662, intron 6 of 6) -4408 NR_038993 100131117 Hs.122417 NR_038993 ENSG00000241560 ZBTB20-AS1 - ZBTB20 antisense RNA 1 ncRNA 195.25-46 chr7 157203429 157203807 + 0.75 NA intron (NM_014671, intron 11 of 22) intron (NM_014671, intron 11 of 22) 64692 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 120.75-104 chr9 71709363 71709566 + 0.75 NA exon (NM_001349784, exon 17 of 24) exon (NM_001349784, exon 17 of 24) 59049 NM_013390 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 118-41 chr22 33052762 33052999 + 0.75 NA promoter-TSS (NM_001369908) promoter-TSS (NM_001369908) -336 NM_001369908 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 178.5-40 chr20 42383587 42383884 + 0.75 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -301748 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 128-12 chr14 20238314 20238555 + 0.75 NA Intergenic Intergenic -4358 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 123-20 chr14 60026507 60026712 + 0.75 NA intron (NR_075071, intron 27 of 32) L1M1|LINE|L1 -65302 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 155-20 chr14 79237321 79237738 + 0.75 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 37547 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 160.25-62 chr9 69280103 69280467 + 0.75 NA Intergenic HAL1|LINE|L1 26771 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 132.75-93 chr7 89617915 89618186 + 0.75 NA Intergenic Intergenic -501350 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 121.75-35 chr2 22252923 22253188 + 0.75 NA Intergenic Intergenic -283424 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 125-18 chr12 18436261 18436549 + 0.75 NA intron (NM_001288774, intron 18 of 32) MLT1L|LTR|ERVL-MaLR 174865 NM_001288774 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 116.5-45 chr17 62000180 62000504 + 0.75 NA intron (NM_005121, intron 9 of 29) intron (NM_005121, intron 9 of 29) 64936 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 138-49 chr3 45463607 45463821 + 0.75 NA intron (NM_001368263, intron 7 of 20) L2a|LINE|L2 45831 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 237-12 chr14 71879273 71879721 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -52674 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 127.75-103 chr9 5147665 5147855 + 0.75 NA Intergenic L1P4a|LINE|L1 37879 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 130-45 chr22 25298943 25299379 + 0.75 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat -19096 NR_029395 91353 Hs.651077 NM_001013618 IGLL3P 16.1|IGLL3 immunoglobulin lambda like polypeptide 3, pseudogene pseudo 154.25-67 chr8 121871897 121872249 + 0.75 NA Intergenic HAL1|LINE|L1 -230633 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 140-33 chr2 63741413 63741765 + 0.75 NA Intergenic Intergenic -99375 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 225-38 chr8 27520859 27521194 + 0.75 NA intron (NM_001979, intron 10 of 18) intron (NM_001979, intron 10 of 18) 29883 NM_001256483 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 131.75-60 chr5 9014688 9014932 + 0.75 NA Intergenic Intergenic 39085 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 157.25-21 chr12 54635765 54636001 + 0.75 NA promoter-TSS (NM_033277) promoter-TSS (NM_033277) -988 NM_033277 90070 Hs.307096 NM_033277 ENSG00000135413 LACRT - lacritin protein-coding 114.5-31 chr17 42476826 42477063 + 0.75 NA intron (NM_005177, intron 5 of 20) intron (NM_005177, intron 5 of 20) -17829 NR_049845 100847030 NR_049845 ENSG00000264314 MIR548AT - microRNA 548at ncRNA 114-44 chr18 32605337 32605508 + 0.75 NA Intergenic L1MA3|LINE|L1 93759 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 170-37 chr4 37095102 37095568 + 0.75 NA Intergenic Intergenic 93556 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 116-4 chr1 103386248 103386456 + 0.75 NA Intergenic L2a|LINE|L2 139159 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 143.75-32 chr14 30557543 30557843 + 0.75 NA intron (NR_151720, intron 3 of 3) L1ME4b|LINE|L1 -1430 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 148.25-46 chr21 26355737 26356031 + 0.75 NA Intergenic Intergenic -37751 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 149.5-92 chr6 48765008 48765245 + 0.75 NA Intergenic Intergenic -696437 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 132.75-4 chr1 64786258 64786473 + 0.75 NA intron (NM_001366165, intron 4 of 11) L1MEh|LINE|L1 41290 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 136.25-3 chr1 65238431 65238699 + 0.75 NA Intergenic L1MC4|LINE|L1 -26129 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 144.75-77 chr7 12620432 12620667 + 0.75 NA intron (NR_156701, intron 4 of 14) intron (NR_156701, intron 4 of 14) 31026 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 173.5-11 chr11 112587339 112587728 + 0.75 NA Intergenic Intergenic -31731 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 120-11 chr1 163394781 163394972 + 0.75 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 28315 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 123.75-21 chr11 20389309 20389487 + 0.75 NA intron (NM_005788, intron 2 of 15) intron (NM_005788, intron 2 of 15) 1682 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 134.5-66 chr3 188605003 188605306 + 0.75 NA intron (NM_001167672, intron 4 of 9) L2b|LINE|L2 -36488 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 128-58 chr6 110071908 110072140 + 0.75 NA Intergenic MIR3|SINE|MIR 93713 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 114.25-79 chr4 101106441 101106677 + 0.75 NA intron (NM_001130691, intron 3 of 12) intron (NM_001130691, intron 3 of 12) 134313 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 173.5-104 chr8 133230065 133230443 + 0.75 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 39215 NM_080838 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 151.75-19 chr12 83574916 83575200 + 0.75 NA Intergenic Intergenic 887903 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 321.75-13 chr5 40693016 40693802 + 0.75 NA 3' UTR (NM_000958, exon 3 of 3) 3' UTR (NM_000958, exon 3 of 3) 13494 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 159-23 chr14 66112534 66112817 + 0.75 NA Intergenic Intergenic -373696 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 163.5-5 chr1 91992296 91992767 + 0.75 NA intron (NM_001726, intron 14 of 18) intron (NM_001726, intron 14 of 18) -37454 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 167.75-25 chr15 64960476 64960951 + 0.75 NA Intergenic AluSx|SINE|Alu 28757 NM_001127889 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 202-4 chr12 31476280 31476624 + 0.75 NA intron (NM_001366891, intron 3 of 4) MIRb|SINE|MIR -107151 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 243-30 chr9 8180376 8181036 + 0.75 NA Intergenic Intergenic -380928 NM_001318059 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 132.25-73 chr5 79696331 79696570 + 0.75 NA intron (NM_153610, intron 1 of 12) intron (NM_153610, intron 1 of 12) 6614 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 121-29 chr18 68803498 68803708 + 0.75 NA intron (NM_024781, intron 1 of 7) L2a|LINE|L2 5523 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 211-19 chr20 56761743 56762108 + 0.75 NA Intergenic Intergenic 132619 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 161.75-47 chr6 667086 667364 + 0.75 NA intron (NR_073064, intron 2 of 29) L1MCa|LINE|L1 -10261 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 143.75-42 chr18 6470919 6471150 + 0.75 NA Intergenic L1MB2|LINE|L1 -40382 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 177.25-25 chr2 109507519 109507967 + 0.75 NA Intergenic Intergenic 105924 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 137-75 chr9 27963498 27963736 + 0.75 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -389751 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 195.25-14 chr14 38762714 38763217 + 0.75 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -119631 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 154-50 chr4 112687548 112687933 + 0.75 NA Intergenic Intergenic -18278 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 226-5 chr10 69277912 69278302 + 0.75 NA promoter-TSS (NM_001358263) promoter-TSS (NM_001358263) -389 NM_001358263 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 158.75-42 chr21 34184191 34184549 + 0.75 NA intron (NR_027266, intron 1 of 1) intron (NR_027266, intron 1 of 1) 3693 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 140.75-69 chr8 119611354 119611790 + 0.75 NA intron (NM_001330600, intron 8 of 25) intron (NM_001330600, intron 8 of 25) -18564 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 152.5-54 chr2 217884897 217885246 + 0.75 NA exon (NM_022648, exon 14 of 33) exon (NM_022648, exon 14 of 33) 15557 NR_106867 102465485 NR_106867 ENSG00000275458 MIR6809 hsa-mir-6809 microRNA 6809 ncRNA 119.25-28 chr14 67586397 67586707 + 0.75 NA intron (NM_020715, intron 28 of 28) intron (NM_020715, intron 28 of 28) 13716 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 174.5-2 chr1 110871934 110872328 + 0.75 NA promoter-TSS (NM_001320638) promoter-TSS (NM_001320638) 932 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 141-4 chr1 97052662 97052945 + 0.75 NA Intergenic Intergenic -43120 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 131.5-36 chr19 7697780 7698080 + 0.75 NA intron (NM_002002, intron 4 of 10) intron (NM_002002, intron 4 of 10) 1549 NM_001207019 2208 Hs.465778 NM_002002 ENSG00000104921 FCER2 BLAST-2|CD23|CD23A|CLEC4J|FCE2|IGEBF Fc fragment of IgE receptor II protein-coding 196.25-48 chr4 33585787 33586162 + 0.75 NA Intergenic LTR16A|LTR|ERVL 453919 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 116.25-26 chr15 58760041 58760210 + 0.75 NA Intergenic AluSq|SINE|Alu -10418 NM_001110 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 146.25-29 chr16 70599349 70599610 + 0.75 NA intron (NM_152456, intron 1 of 6) AluSx|SINE|Alu 19580 NM_001172771 146433 Hs.461214 NM_152456 ENSG00000157368 IL34 C16orf77|IL-34 interleukin 34 protein-coding 137-34 chr19 39206688 39206923 + 0.75 NA Intergenic AluSx1|SINE|Alu -2539 NM_001080468 342898 Hs.124123 NM_001080468 ENSG00000179751 SYCN INSSA1|SYL syncollin protein-coding 117.5-28 chr15 80293196 80293476 + 0.75 NA intron (NR_033833, intron 1 of 2) AluSz|SINE|Alu -41123 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 163.75-57 chr5 110994259 110994678 + 0.75 NA Intergenic L1M5|LINE|L1 -75612 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 154.75-27 chr2 46237290 46237581 + 0.75 NA Intergenic MER91A|DNA|hAT-Tip100 -59972 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 123.25-31 chr16 82642798 82643018 + 0.75 NA intron (NM_001220488, intron 2 of 14) MIR|SINE|MIR 15939 NM_001220490 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 119.25-72 chr4 56105563 56105867 + 0.75 NA Intergenic Intergenic -64480 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 142.5-84 chr7 9506549 9506866 + 0.75 NA Intergenic Intergenic -127563 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 175-51 chr6 52491836 52492461 + 0.75 NA intron (NR_033327, intron 9 of 9) intron (NR_033327, intron 9 of 9) 71140 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 145.75-58 chr4 41283522 41283762 + 0.75 NA Intergenic AluJb|SINE|Alu 26714 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 135.25-34 chr18 5676617 5677008 + 0.75 NA Intergenic L1MA9|LINE|L1 -47821 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 165.25-47 chr5 45596159 45596531 + 0.75 NA intron (NM_021072, intron 2 of 7) MIR|SINE|MIR 100035 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 152.25-34 chr2 121249166 121249470 + 0.75 NA intron (NM_014553, intron 3 of 14) MIRc|SINE|MIR 35884 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 158.5-14 chr10 34443717 34444030 + 0.75 NA intron (NM_001184791, intron 4 of 20) intron (NM_001184791, intron 4 of 20) 371423 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 197-32 chr20 45983362 45983766 + 0.75 NA Intergenic L2c|LINE|L2 -11361 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 123-23 chr15 42638452 42638691 + 0.75 NA intron (NM_020759, intron 6 of 32) MIR3|SINE|MIR 62965 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 253.5-42 chr7 62991576 62992313 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 312112 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 158.25-7 chr10 17543144 17543485 + 0.75 NA Intergenic AluJb|SINE|Alu 74060 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 193-39 chr3 192890067 192890382 + 0.75 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 27632 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 144-41 chr21 46544021 46544316 + 0.75 NA intron (NM_001146115, intron 17 of 19) intron (NM_001146115, intron 17 of 19) 60914 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 172.5-64 chr5 132422171 132422635 + 0.75 NA intron (NR_161242, intron 2 of 3) AluSz|SINE|Alu 11474 NR_161242 441108 Hs.658288 NM_001013717 C5orf56 - chromosome 5 open reading frame 56 ncRNA 169.5-81 chr8 46045677 46046051 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 571779 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 215-6 chr10 106796710 106797147 + 0.75 NA intron (NM_001206569, intron 3 of 25) AluSc|SINE|Alu 367778 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 198-50 chr9 135166709 135167052 + 0.75 NA Intergenic Intergenic -14729 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 130.75-78 chr9 110201405 110201620 + 0.75 NA intron (NM_001012993, intron 1 of 1) intron (NM_001012993, intron 1 of 1) 6621 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 113.5-93 chr4 156914279 156914468 + 0.75 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 57426 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 159.75-28 chr2 138375603 138375959 + 0.75 NA Intergenic Intergenic -125989 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 143-66 chr6 147284471 147284762 + 0.75 NA intron (NM_139244, intron 8 of 25) L2c|LINE|L2 -80002 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 140.5-60 chr3 25002344 25002684 + 0.75 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 173191 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 143-31 chr17 64368156 64368514 + 0.75 NA intron (NM_000442, intron 5 of 15) L2a|LINE|L2 22525 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 190.25-16 chr12 129648429 129648899 + 0.75 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 255361 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 187.75-13 chr14 60268497 60268885 + 0.75 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 19470 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 139.75-71 chr8 88181446 88181830 + 0.75 NA intron (NM_005941, intron 3 of 9) L1MC2|LINE|L1 145845 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 163.25-69 chr8 61090530 61090747 + 0.75 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -122890 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 172.75-37 chr6 162731004 162731303 + 0.75 NA intron (NM_001080379, intron 1 of 4) Tigger4a|DNA|TcMar-Tigger 3183 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 116.75-31 chr16 81471946 81472188 + 0.75 NA intron (NM_198390, intron 1 of 20) (TGCACA)n|Simple_repeat|Simple_repeat -23287 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 160-29 chr3 102132242 102132645 + 0.75 NA Intergenic LTR88b|LTR|Gypsy? -31262 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 215-35 chr4 124541179 124541680 + 0.75 NA intron (NR_110838, intron 3 of 8) Tigger4b|DNA|TcMar-Tigger 17005 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 132.25-3 chr1 179853824 179854095 + 0.75 NA intron (NM_145034, intron 2 of 5) intron (NM_145034, intron 2 of 5) 14881 NM_001349933 163590 Hs.571797 NM_022347 ENSG00000169905 TOR1AIP2 IFRG15|LULL1|NET9 torsin 1A interacting protein 2 protein-coding 180.25-69 chr9 74256982 74257326 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -114377 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 143.25-47 chr3 39787200 39787492 + 0.75 NA Intergenic L1ME3A|LINE|L1 -21568 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 114.5-16 chr12 110985062 110985309 + 0.75 NA Intergenic L1M6|LINE|L1 -27367 NR_135001 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 130.75-39 chr2 122353630 122353896 + 0.75 NA Intergenic L1M4|LINE|L1 598112 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 137.5-35 chr15 60597800 60598025 + 0.75 NA intron (NM_134260, intron 1 of 11) intron (NM_134260, intron 1 of 11) -5386 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 118-38 chr2 55672609 55672902 + 0.75 NA intron (NM_033109, intron 9 of 27) intron (NM_033109, intron 9 of 27) 21089 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 128.5-22 chr14 56868831 56869168 + 0.75 NA intron (NR_146411, intron 2 of 2) UCON132b|DNA|hAT-Tip100 55841 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 218.75-5 chr10 2111895 2112280 + 0.75 NA Intergenic LTR40A1|LTR|ERVL -35998 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 200.25-29 chr20 54200943 54201448 + 0.75 NA Intergenic Intergenic -6892 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 163-27 chr20 8855735 8856067 + 0.75 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 24716 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 133.75-8 chr1 187407861 187408107 + 0.75 NA Intergenic MER4A1|LTR|ERV1 -35644 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 129-3 chr1 87398499 87398868 + 0.75 NA Intergenic Intergenic -27028 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 121.5-35 chr14 76697361 76697570 + 0.75 NA Intergenic Intergenic -64003 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 117-10 chr10 41858222 41858512 + 0.75 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 509678 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 131.75-40 chr18 74805733 74805955 + 0.75 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 174881 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 149-54 chr7 148196846 148197113 + 0.75 NA intron (NM_014141, intron 17 of 22) intron (NM_014141, intron 17 of 22) -393787 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 134.5-49 chr20 40541463 40541771 + 0.75 NA Intergenic L1PREC2|LINE|L1 147619 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 169.75-28 chr17 76037313 76037642 + 0.75 NA Intergenic AluSz|SINE|Alu -10171 NM_001320747 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 191.25-58 chr8 73359682 73360176 + 0.75 NA Intergenic Intergenic -3468 NR_125388 101926926 Hs.640090 NR_125388 ENSG00000250295 RDH10-AS1 - RDH10 antisense RNA 1 ncRNA 201.75-24 chr3 81630160 81630587 + 0.75 NA intron (NM_000158, intron 7 of 15) L1P1|LINE|L1 131272 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 128-14 chr14 86357758 86358154 + 0.75 NA Intergenic Intergenic 423278 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 140.5-14 chr12 16591003 16591316 + 0.75 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 14220 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 116.5-52 chr18 8117015 8117286 + 0.75 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 249884 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 125.75-35 chr2 49257296 49257491 + 0.75 NA Intergenic LTR78|LTR|ERV1 -102866 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 151.25-57 chr8 102410998 102411251 + 0.75 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 1565 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 128.25-7 chr1 205140922 205141235 + 0.75 NA Intergenic Intergenic -19100 NM_005057 5929 Hs.519230 NM_005057 ENSG00000117222 RBBP5 RBQ3|SWD1 RB binding protein 5, histone lysine methyltransferase complex subunit protein-coding 150.75-74 chr8 140356253 140356474 + 0.75 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 101381 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 214.75-22 chr21 26875693 26876053 + 0.75 NA Intergenic MLT2B2|LTR|ERVL -30464 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 114-16 chr10 108889891 108890146 + 0.75 NA Intergenic HERVL-int|LTR|ERVL -820725 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 164.25-11 chr10 69047911 69048139 + 0.75 NA Intergenic AluSp|SINE|Alu -39578 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 181.25-5 chr10 67009703 67010118 + 0.75 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 2243 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 206.25-26 chr4 123277649 123277973 + 0.75 NA intron (NM_001345856, intron 15 of 15) L1PA15|LINE|L1 -118984 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 118.5-103 chr7 55200928 55201194 + 0.75 NA intron (NM_001346941, intron 18 of 21) intron (NM_001346941, intron 18 of 21) -12112 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 139.5-30 chr14 64709309 64709583 + 0.75 NA intron (NM_001308147, intron 1 of 16) intron (NM_001308147, intron 1 of 16) 5022 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 205.5-56 chr8 48292465 48292828 + 0.75 NA Intergenic L1MD1|LINE|L1 -258921 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 145.75-16 chr14 89746952 89747181 + 0.75 NA Intergenic Intergenic -127901 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 134-51 chr3 62085392 62085679 + 0.75 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 233412 NR_038282 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 208.25-48 chr9 70315280 70315603 + 0.75 NA intron (NM_015110, intron 12 of 24) intron (NM_015110, intron 12 of 24) 56463 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 148.75-9 chr11 58910554 58910911 + 0.75 NA intron (NM_001354699, intron 2 of 7) L1MEd|LINE|L1 5334 NM_001354699 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 167.5-95 chrX 84307096 84307343 + 0.75 NA Intergenic Intergenic -81391 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 220.25 chr1 34667117 34667650 + 0.75 NA Intergenic Intergenic 2311 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 172.75-9 chr14 27209198 27209532 + 0.75 NA Intergenic Intergenic 300723 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 206-4 chr10 57504796 57505205 + 0.75 NA Intergenic Intergenic -200441 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 135.5-21 chr11 131823722 131823949 + 0.75 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -86089 NR_147850 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 194.25-33 chr20 50854282 50854784 + 0.75 NA intron (NM_198799, intron 4 of 4) MIR|SINE|MIR 55258 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 126.5-38 chr15 70167503 70167774 + 0.75 NA Intergenic Intergenic -69721 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 146-51 chr6 18222207 18222498 + 0.75 NA 3' UTR (NM_153042, exon 18 of 18) 3' UTR (NM_153042, exon 18 of 18) 42178 NM_001134709 7913 Hs.484813 NM_003472 ENSG00000124795 DEK D6S231E DEK proto-oncogene protein-coding 123.25-42 chr2 28026739 28026947 + 0.75 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 30476 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 140.75-57 chr7 4923403 4923824 + 0.75 NA intron (NR_072989, intron 2 of 8) intron (NR_072989, intron 2 of 8) 35574 NR_072989 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 143.25-24 chr14 34189551 34189866 + 0.75 NA Intergenic LTR104_Mam|LTR|Gypsy -238634 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 127.5-71 chr20 13252610 13252849 + 0.75 NA intron (NM_080826, intron 1 of 5) AluSz|SINE|Alu -13042 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 119.75-56 chr3 64716447 64716704 + 0.75 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -28575 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 213.75-42 chr6 151579666 151580130 + 0.75 NA intron (NM_025059, intron 6 of 10) intron (NM_025059, intron 6 of 10) 85881 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 146-13 chr13 43269779 43270032 + 0.75 NA intron (NM_001347966, intron 13 of 17) intron (NM_001347966, intron 13 of 17) 156740 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 145.75-10 chr14 55784368 55784648 + 0.75 NA intron (NR_026796, intron 3 of 3) L1PREC2|LINE|L1 12166 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 143.5-27 chr12 125201532 125201920 + 0.75 NA intron (NM_001366854, intron 1 of 8) MIR|SINE|MIR 15340 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 144.75-83 chr8 78738641 78738881 + 0.75 NA intron (NM_001199887, intron 3 of 4) intron (NM_001199887, intron 3 of 4) -14387 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 140.25-78 chr6 56486889 56487261 + 0.75 NA intron (NM_001144770, intron 79 of 94) intron (NM_001144770, intron 79 of 94) -92947 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 141.75-38 chr2 11825920 11826158 + 0.75 NA non-coding (NR_146080, exon 20 of 20) non-coding (NR_146080, exon 20 of 20) 10947 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 167-16 chr15 98926160 98926613 + 0.75 NA intron (NM_001291858, intron 13 of 20) L1MA8|LINE|L1 79270 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 116.5-98 chr6 35155037 35155423 + 0.75 NA Intergenic L1MB2|LINE|L1 -13820 NM_001261819 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 176.75-27 chr2 178896610 178896928 + 0.75 NA intron (NM_001316745, intron 8 of 11) MIR|SINE|MIR -89346 NM_001267550 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 137.5-106 chr7 49131995 49132311 + 0.75 NA Intergenic Intergenic 207606 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 160.75-56 chr6 38283053 38283326 + 0.75 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -198407 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 155-58 chr7 79655421 79655708 + 0.75 NA Intergenic Intergenic 201604 NR_038343 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 142.25-31 chr19 6668010 6668332 + 0.75 NA intron (NM_172014, intron 1 of 3) AluJr|SINE|Alu 1987 NM_172014 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 129.75-41 chr2 124240573 124240783 + 0.75 NA intron (NM_130773, intron 2 of 23) (A)n|Simple_repeat|Simple_repeat 215391 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 160.25-38 chr20 36968836 36969194 + 0.75 NA Intergenic AluSz|SINE|Alu -17172 NM_015474 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 123-61 chr7 20623536 20623757 + 0.75 NA intron (NM_001163941, intron 2 of 27) intron (NM_001163941, intron 2 of 27) 7979 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 212.75-9 chr14 46571905 46572312 + 0.75 NA Intergenic Intergenic 79673 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 120.5-56 chr20 55654709 55654994 + 0.75 NA Intergenic Intergenic -227654 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 136.5-62 chr20 59529888 59530288 + 0.75 NA Intergenic AluSq2|SINE|Alu -47421 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 373.25-2 chr14 26196127 26196974 + 0.75 NA Intergenic MER92B|LTR|ERV1 356880 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 124.5-109 chr8 130624996 130625185 + 0.75 NA Intergenic Intergenic -181416 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 134.75-67 chr7 3837695 3837926 + 0.75 NA intron (NM_152744, intron 5 of 44) MER3|DNA|hAT-Charlie -291875 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 113-39 chr18 2156674 2156836 + 0.75 NA Intergenic Intergenic 414750 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 196.5-26 chr13 48404498 48404781 + 0.75 NA intron (NM_000321, intron 17 of 26) AluSg|SINE|Alu 8474 NM_001162498 10161 Hs.123464 NM_005767 ENSG00000139679 LPAR6 ARWH1|HYPT8|LAH3|P2RY5|P2Y5 lysophosphatidic acid receptor 6 protein-coding 164.25-47 chr5 73023085 73023505 + 0.75 NA intron (NM_001146032, intron 7 of 24) intron (NM_001146032, intron 7 of 24) 67254 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 203.75-27 chr20 10571151 10571549 + 0.75 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 78345 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 147.25-4 chr10 102428317 102428583 + 0.75 NA intron (NM_024040, intron 1 of 8) L2a|LINE|L2 4124 NM_024040 79004 Hs.500874 NM_024040 ENSG00000107874 CUEDC2 C10orf66|bA18I14.5 CUE domain containing 2 protein-coding 216.75-39 chr6 61044726 61045137 + 0.75 NA Intergenic MER6A|DNA|TcMar-Tigger -529199 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 285.75-21 chr7 30942148 30942759 + 0.75 NA Intergenic L1MC4|LINE|L1 -21500 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 132.25-81 chr6 55576446 55576683 + 0.75 NA intron (NM_001287746, intron 1 of 9) L2b|LINE|L2 2650 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 210.25-19 chr17 71536934 71537500 + 0.75 NA Intergenic MLT2C1|LTR|ERVL -335038 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 147-65 chr5 56462810 56463137 + 0.75 NA intron (NR_104664, intron 4 of 4) intron (NR_104664, intron 4 of 4) 18796 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 121.75-70 chr5 121494578 121494752 + 0.75 NA Intergenic Intergenic 172115 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 162.25-40 chr6 5188481 5188892 + 0.75 NA intron (NM_001164840, intron 2 of 2) MIRb|SINE|MIR -40364 NR_037462 100500900 NR_037462 ENSG00000265083 MIR3691 mir-3691 microRNA 3691 ncRNA 140.75-40 chr22 36959129 36959344 + 0.75 NA Intergenic Intergenic -6012 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 127.25-28 chr14 67810230 67810491 + 0.75 NA intron (NM_015346, intron 3 of 41) intron (NM_015346, intron 3 of 41) 6230 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 116-29 chr16 81687078 81687382 + 0.75 NA intron (NM_030629, intron 10 of 20) intron (NM_030629, intron 10 of 20) 21876 NR_045112 100129617 Hs.657151 NR_045112 LOC100129617 - uncharacterized LOC100129617 ncRNA 157.25-23 chr12 99491228 99491658 + 0.75 NA intron (NM_152788, intron 10 of 25) L1PREC2|LINE|L1 -156310 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 151.75-33 chr16 55239013 55239286 + 0.75 NA Intergenic MIRb|SINE|MIR -85410 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 432.75-4 chr15 101328998 101329840 + 0.75 NA intron (NM_138319, intron 14 of 20) intron (NM_138319, intron 14 of 20) -5018 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 171.5-24 chr13 109281470 109281800 + 0.75 NA Intergenic (TGCTT)n|Simple_repeat|Simple_repeat -114332 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 157.5-37 chr17 52699002 52699503 + 0.75 NA Intergenic Tigger8|DNA|TcMar-Tigger -162869 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 171.5-49 chr20 38648352 38648750 + 0.75 NA intron (NM_001164431, intron 13 of 14) intron (NM_001164431, intron 13 of 14) 46742 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 123.75-16 chr10 54534104 54534343 + 0.75 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 47993 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 135.25-50 chr2 139394760 139395100 + 0.75 NA Intergenic Intergenic 497606 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 195.75-45 chr5 148746888 148747213 + 0.75 NA Intergenic Intergenic -79543 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 154.25-2 chr1 44263322 44263756 + 0.75 NA intron (NM_001301698, intron 6 of 7) intron (NM_001301698, intron 6 of 7) -10980 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 126.25-64 chr4 53951648 53951988 + 0.75 NA Intergenic Intergenic 35464 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 160.5-26 chr15 87119960 87120371 + 0.75 NA Intergenic Intergenic -131739 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 134.75-70 chr8 15628831 15629127 + 0.75 NA intron (NM_001356429, intron 2 of 10) intron (NM_001356429, intron 2 of 10) 88716 NM_001356429 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 115.25-61 chr22 33868143 33868307 + 0.75 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 52203 NM_004737 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 187-54 chr6 103559833 103560157 + 0.75 NA Intergenic Intergenic 1299551 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 126.75-56 chr22 45690843 45691068 + 0.75 NA intron (NM_013236, intron 2 of 11) intron (NM_013236, intron 2 of 11) 19121 NM_013236 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 118.25-45 chr2 11331809 11332091 + 0.75 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 12686 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 137.5-115 chr8 82195639 82195924 + 0.75 NA Intergenic Charlie5|DNA|hAT-Charlie -353495 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 137.25-71 chr7 72167325 72167567 + 0.75 NA intron (NM_001363460, intron 2 of 5) AluSx1|SINE|Alu 169945 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 155.25-54 chr5 5106280 5106536 + 0.75 NA Intergenic Intergenic -28097 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 118.75-28 chr13 109296277 109296478 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -104319 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 191-30 chr21 34319771 34320238 + 0.75 NA Intergenic Intergenic -44020 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 187.5-81 chr8 49883671 49884173 + 0.75 NA Intergenic L1MB7|LINE|L1 -25874 NM_001287813 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 215.25-10 chr15 68180681 68181166 + 0.75 NA intron (NM_016166, intron 11 of 13) intron (NM_016166, intron 11 of 13) 25187 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 145.25-32 chr16 64745720 64745989 + 0.75 NA Intergenic Intergenic 376209 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 131.75-62 chr5 16237798 16238047 + 0.75 NA Intergenic Intergenic 57681 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 131.5-2 chr1 89727091 89727344 + 0.75 NA Intergenic Intergenic -93815 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 206.25-16 chr18 36465746 36466177 + 0.75 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 168248 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 150.5-87 chr7 105221566 105221969 + 0.75 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 47310 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 172.75-6 chr10 120295647 120296091 + 0.75 NA Intergenic MIR|SINE|MIR 59354 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 164.5-57 chr3 113020492 113020799 + 0.75 NA promoter-TSS (NM_001319111) promoter-TSS (NM_001319111) -974 NM_001319109 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 124.25-66 chr5 8101765 8101986 + 0.75 NA Intergenic L1PA15|LINE|L1 232727 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 197.75-27 chr3 65842493 65842888 + 0.75 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -51126 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 115.75-82 chr6 23628269 23628591 + 0.75 NA Intergenic Intergenic -497785 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 177-10 chr13 23536380 23536764 + 0.75 NA Intergenic L1ME2|LINE|L1 -33798 NM_001204459 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 127.25-41 chr18 1706690 1706982 + 0.75 NA Intergenic Tigger15a|DNA|TcMar-Tigger -347207 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 136.75-77 chr5 21636013 21636225 + 0.75 NA Intergenic MIRb|SINE|MIR 176639 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 124.5-62 chr21 27220524 27220945 + 0.75 NA Intergenic Intergenic -253646 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 154.5-44 chr2 186330343 186330734 + 0.75 NA Intergenic A-rich|Low_complexity|Low_complexity -155722 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 114-74 chr6 47121688 47122005 + 0.75 NA Intergenic L1MC1|LINE|L1 -79514 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 113-67 chr4 30536295 30536577 + 0.75 NA Intergenic Intergenic -183933 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 188-5 chr11 45840401 45840694 + 0.75 NA Intergenic L1MB8|LINE|L1 -6571 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 116.5-67 chr2 190402830 190403134 + 0.75 NA Intergenic Intergenic -5373 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 139.5-98 chr7 28582655 28582948 + 0.75 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -103332 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 146.75-49 chr5 152976151 152976529 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger -3991 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 177.25-42 chr5 96070418 96070751 + 0.75 NA intron (NR_130776, intron 1 of 4) L2|LINE|L2 -8554 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 163-44 chr6 23569416 23569865 + 0.75 NA Intergenic Intergenic -556575 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 157-48 chr4 180757516 180757854 + 0.75 NA Intergenic MER21B|LTR|ERVL 401464 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 120.25-46 chr3 96158445 96158808 + 0.75 NA Intergenic L1PA12|LINE|L1 -201338 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 168.25-63 chr8 109496283 109496717 + 0.75 NA intron (NM_177531, intron 63 of 77) intron (NM_177531, intron 63 of 77) -43200 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 184.25-53 chr8 113072899 113073323 + 0.75 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 304041 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 152-33 chr2 57808834 57809057 + 0.75 NA Intergenic L1MEg|LINE|L1 -98706 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 122.25-82 chr5 96817878 96818127 + 0.75 NA Intergenic Intergenic -3857 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 148.25-37 chr2 151398917 151399202 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie -10843 NM_018151 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 127.75-93 chr8 13807717 13807951 + 0.75 NA Intergenic Intergenic 178144 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 148.25-74 chr8 119502902 119503210 + 0.75 NA Intergenic Intergenic 86610 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 166.25-56 chr8 29963040 29963353 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -5848 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 166.25-52 chr6 141275930 141276370 + 0.75 NA Intergenic Tigger3b|DNA|TcMar-Tigger 592336 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 123.25-44 chr2 43799532 43799746 + 0.75 NA intron (NM_016008, intron 8 of 12) L3|LINE|CR1 25600 NM_015522 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 156.75-42 chr19 8627012 8627319 + 0.75 NA Intergenic AluJr|SINE|Alu -16450 NM_030957 81794 Hs.657508 NM_030957 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif 10 protein-coding 117.75-34 chr18 67968513 67968717 + 0.75 NA Intergenic Intergenic -153793 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 181-2 chr1 35980702 35981112 + 0.75 NA intron (NM_024852, intron 5 of 18) L1M7|LINE|L1 49802 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 118.75-35 chr16 4241272 4241558 + 0.75 NA intron (NM_001323667, intron 1 of 6) intron (NM_001323667, intron 1 of 6) 665 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 156.25-57 chr4 111778661 111778955 + 0.75 NA Intergenic Intergenic -366646 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 140.25-7 chr10 69120882 69121213 + 0.75 NA Intergenic L1ME2z|LINE|L1 -3106 NM_001035260 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 190.75-20 chr14 51818068 51818498 + 0.75 NA Intergenic MLT1L|LTR|ERVL-MaLR -42329 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 123.75-8 chr1 178857585 178857964 + 0.75 NA intron (NM_004673, intron 3 of 5) intron (NM_004673, intron 3 of 5) 13303 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 114.5-50 chr2 59929792 59930023 + 0.75 NA Intergenic Intergenic 453129 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 125.75-18 chr12 112995448 112995733 + 0.75 NA intron (NM_002535, intron 3 of 9) L1ME3|LINE|L1 17071 NM_016817 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 186.25-20 chr15 87102960 87103369 + 0.75 NA Intergenic L1MCa|LINE|L1 -114738 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 203.5-54 chr9 122737598 122737881 + 0.75 NA Intergenic L1M4|LINE|L1 -12109 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 130.75 chr1 35805722 35805927 + 0.75 NA Intergenic AluY|SINE|Alu -1812 NR_146062 192670 Hs.744858 NM_017629 ENSG00000134698 AGO4 EIF2C4 argonaute RISC component 4 protein-coding 158.25-47 chr5 9172465 9172800 + 0.75 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -118737 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 527.25 chr11 14160260 14161302 + 0.75 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 197704 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 131.75-54 chr3 112689304 112689616 + 0.75 NA Intergenic Intergenic -47629 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 137.5-18 chr11 39697690 39698039 + 0.75 NA Intergenic Intergenic 595266 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 113.5-72 chr22 24013769 24014077 + 0.75 NA intron (NM_001199281, intron 1 of 36) L1MC4a|LINE|L1 2553 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 189-45 chr7 10091308 10091787 + 0.75 NA Intergenic L2b|LINE|L2 457277 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 117-45 chr2 215189049 215189267 + 0.75 NA Intergenic Intergenic -50532 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 123.5-107 chr8 81417173 81417350 + 0.75 NA Intergenic THE1C|LTR|ERVL-MaLR 30178 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 166.5-27 chr12 116609711 116610078 + 0.75 NA Intergenic MER20|DNA|hAT-Charlie 50513 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 113.25-37 chr14 39833824 39834106 + 0.75 NA Intergenic Intergenic -401465 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 116.25-58 chr3 133759783 133759964 + 0.75 NA intron (NM_001063, intron 9 of 16) intron (NM_001063, intron 9 of 16) 13480 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 194.5-15 chr11 102115309 102115568 + 0.75 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 2990 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 158.25-69 chr8 121519604 121519910 + 0.75 NA Intergenic L1MCa|LINE|L1 -119589 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 212.5-23 chr18 4262642 4263017 + 0.75 NA intron (NM_001242761, intron 1 of 11) MIR|SINE|MIR -1773 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 158-25 chr18 70469282 70469626 + 0.75 NA Intergenic Intergenic -84863 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 237.25-2 chr1 170891874 170892425 + 0.75 NA Intergenic Intergenic -43322 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 133.75-19 chr12 122359710 122359927 + 0.75 NA intron (NM_198240, intron 5 of 23) intron (NM_198240, intron 5 of 23) -35724 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 124-60 chr5 154753990 154754173 + 0.75 NA intron (NM_001367717, intron 1 of 18) MER5A|DNA|hAT-Charlie -1296 NM_001367718 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 146.75-25 chr2 217020920 217021268 + 0.75 NA Intergenic L1MC4a|LINE|L1 150322 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 116.5-94 chr5 132460423 132460592 + 0.75 NA intron (NR_161242, intron 3 of 3) L2b|LINE|L2 30266 NR_149068 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 161-31 chr17 74428695 74429035 + 0.75 NA Intergenic Intergenic -3223 NM_001366261 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 187-26 chr2 84824524 84824970 + 0.75 NA intron (NM_001080824, intron 4 of 5) intron (NM_001080824, intron 4 of 5) 56337 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 305-19 chr6 52357940 52358437 + 0.75 NA Intergenic Intergenic -3963 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 138.5-32 chr14 38395533 38395817 + 0.75 NA Intergenic Intergenic -139582 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 199-15 chr13 56729735 56730124 + 0.75 NA Intergenic Intergenic -410989 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 130.25-48 chr2 103723688 103723905 + 0.75 NA Intergenic L1MA4A|LINE|L1 684536 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 161-4 chr1 98866880 98867229 + 0.75 NA Intergenic THE1B-int|LTR|ERVL-MaLR -137222 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 227.25-6 chr10 96098787 96099376 + 0.75 NA Intergenic AluJo|SINE|Alu -8846 NR_134321 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 116-39 chr2 97767049 97767323 + 0.75 NA intron (NM_015348, intron 33 of 40) intron (NM_015348, intron 33 of 40) 32780 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 128.25-65 chr5 127298713 127298979 + 0.75 NA intron (NM_001308121, intron 1 of 13) intron (NM_001308121, intron 1 of 13) 8050 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 136.25-40 chr18 35086343 35086651 + 0.75 NA intron (NM_001143827, intron 3 of 7) intron (NM_001143827, intron 3 of 7) 45084 NM_014268 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 132.5-81 chr4 76797735 76797952 + 0.75 NA Intergenic Intergenic 100301 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 201.75-4 chr10 37655223 37655778 + 0.75 NA Intergenic L1PBa|LINE|L1 -52569 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 124.75-8 chr1 195004459 195004802 + 0.75 NA Intergenic ERVL-E-int|LTR|ERVL 1084085 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 139-65 chr8 63193856 63194041 + 0.75 NA intron (NM_152758, intron 4 of 4) L1M5|LINE|L1 24945 NM_001277818 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 145.75-2 chr10 28279119 28279477 + 0.75 NA intron (NM_173496, intron 2 of 18) intron (NM_173496, intron 2 of 18) 2825 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 176-6 chr10 47320235 47320511 + 0.75 NA Intergenic Intergenic -2081 NM_016204 2658 Hs.279463 NM_016204 ENSG00000263761 GDF2 BMP-9|BMP9|HHT5 growth differentiation factor 2 protein-coding 263.5-20 chr3 47328523 47328958 + 0.75 NA intron (NM_025010, intron 3 of 9) MIRb|SINE|MIR 45796 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 148.75-50 chr4 97661988 97662224 + 0.75 NA intron (NM_174952, intron 10 of 10) L1PA13|LINE|L1 295180 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 158-39 chr22 48614283 48614758 + 0.75 NA intron (NM_015381, intron 1 of 3) MER81|DNA|hAT-Blackjack 38180 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 176.75-6 chr10 17023676 17023936 + 0.75 NA intron (NM_001081, intron 27 of 66) intron (NM_001081, intron 27 of 66) 106011 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 187-22 chr2 23967433 23967686 + 0.75 NA intron (NM_181713, intron 2 of 6) MIR|SINE|MIR 27096 NM_181713 165324 Hs.591576 NM_181713 ENSG00000173960 UBXN2A UBXD4 UBX domain protein 2A protein-coding 162.25-27 chr3 138869690 138870083 + 0.75 NA Intergenic AluSc8|SINE|Alu -34958 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 114.5-19 chr14 61156119 61156320 + 0.75 NA Intergenic Intergenic 125119 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 113-69 chr4 38677936 38678261 + 0.75 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -13470 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 182-30 chr20 59786886 59787160 + 0.75 NA intron (NM_080672, intron 7 of 12) intron (NM_080672, intron 7 of 12) 65813 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 217.5-46 chr8 91426546 91427037 + 0.75 NA Intergenic Intergenic 177472 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 132-9 chr10 21617780 21618010 + 0.75 NA intron (NM_001195626, intron 8 of 22) AluJr|SINE|Alu 83723 NM_004641 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 169.5-84 chr8 128468985 128469387 + 0.75 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 95493 NR_121672 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 190.25-39 chr4 37123416 37123810 + 0.75 NA Intergenic Intergenic 118378 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 184.5-63 chr5 61245077 61245481 + 0.75 NA Intergenic MIR3|SINE|MIR 19650 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 129.25-24 chr14 28678572 28678869 + 0.75 NA Intergenic LTR33B|LTR|ERVL 86599 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 163.5-94 chr8 135824818 135825087 + 0.75 NA Intergenic L2a|LINE|L2 367496 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 126-63 chr4 35292235 35292623 + 0.75 NA Intergenic AluSc|SINE|Alu 951510 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 123.25-32 chr17 18136155 18136484 + 0.75 NA intron (NM_016239, intron 12 of 64) intron (NM_016239, intron 12 of 64) 27563 NM_016239 51168 Hs.462390 NM_016239 ENSG00000091536 MYO15A DFNB3|MYO15 myosin XVA protein-coding 137.25-72 chr7 131741995 131742256 + 0.75 NA Intergenic Intergenic -168095 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 130-58 chr4 86163615 86164015 + 0.75 NA intron (NM_001318069, intron 3 of 13) intron (NM_001318069, intron 3 of 13) 44009 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 143.5-107 chr9 9154570 9154878 + 0.75 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 296706 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 162.5-26 chr14 29588876 29589213 + 0.75 NA intron (NM_001330069, intron 17 of 18) intron (NM_001330069, intron 17 of 18) 338052 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 117.75-56 chr3 110481087 110481289 + 0.75 NA Intergenic Tigger1|DNA|TcMar-Tigger 588771 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 182-18 chr18 869193 869506 + 0.75 NA Intergenic MER74A|LTR|ERVL -35522 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 199.75-26 chr3 112909079 112909455 + 0.75 NA Intergenic Intergenic -63317 NM_001199215 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 128.25-16 chr11 29465950 29466188 + 0.75 NA Intergenic Intergenic -128344 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 158-24 chr17 79653311 79653694 + 0.75 NA Intergenic Intergenic -42451 NM_001350451 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 154.75-25 chr2 26899366 26899660 + 0.75 NA intron (NM_020134, intron 2 of 12) L2b|LINE|L2 51089 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 205-14 chr14 22470264 22470671 + 0.75 NA intron (NR_148361, intron 2 of 4) Charlie17a|DNA|hAT-Charlie 12492 NR_148361 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 149.75-73 chr9 16673190 16673446 + 0.75 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -53496 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 131.5-39 chr2 57117340 57117532 + 0.75 NA Intergenic Intergenic -790215 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 162.75-41 chr21 31768101 31768393 + 0.75 NA Intergenic L1PA13|LINE|L1 -36129 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 201.75-27 chr4 23797044 23797561 + 0.75 NA intron (NM_001330752, intron 13 of 13) intron (NM_001330752, intron 13 of 13) 83990 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 162.5-68 chr5 53070647 53070917 + 0.75 NA intron (NR_073106, intron 17 of 29) intron (NR_073106, intron 17 of 29) 38975 NM_176806 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 134.75-24 chr17 60296045 60296333 + 0.75 NA intron (NM_032582, intron 3 of 33) intron (NM_032582, intron 3 of 33) -64544 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 189.75-36 chr4 96497709 96498165 + 0.75 NA intron (NR_147149, intron 2 of 3) L1M2|LINE|L1 187234 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 122.5-103 chr9 76918080 76918287 + 0.75 NA Intergenic Intergenic -12069 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 117.25-63 chr4 30683900 30684180 + 0.75 NA Intergenic AluJb|SINE|Alu -36329 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 196-47 chrX 48583151 48583570 + 0.75 NA Intergenic Intergenic 8876 NM_006743 5935 Hs.301404 NM_006743 ENSG00000102317 RBM3 IS1-RNPL|RNPL RNA binding motif protein 3 protein-coding 140.5-73 chr4 57195544 57195976 + 0.75 NA intron (NR_034081, intron 2 of 4) CpG -85375 NM_001253835 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 176.75-40 chr4 135059230 135059624 + 0.75 NA Intergenic LTR1E|LTR|ERV1 64132 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 201-54 chr9 84443457 84443778 + 0.75 NA Intergenic AluSx|SINE|Alu -74890 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 154-39 chr2 53514987 53515382 + 0.75 NA Intergenic Intergenic -252599 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 289.25-7 chr14 50071266 50071857 + 0.75 NA intron (NR_131171, intron 2 of 8) AluSz|SINE|Alu 33482 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 242.75-24 chr8 86773564 86774173 + 0.75 NA Intergenic ERVL-B4-int|LTR|ERVL -30193 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 162-6 chr10 31645229 31645509 + 0.75 NA Intergenic Intergenic -245614 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 165.75-67 chr7 78658563 78659038 + 0.75 NA intron (NM_001301128, intron 2 of 20) L1MD1|LINE|L1 311558 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 163.75-65 chr6 148830386 148830698 + 0.75 NA intron (NM_005715, intron 1 of 7) MIR3|SINE|MIR 83512 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 187.75-45 chr6 74997840 74998198 + 0.75 NA Intergenic L1MEg|LINE|L1 130763 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 183-28 chr16 1445985 1446483 + 0.75 NA 3' UTR (NM_001114331, exon 24 of 24) 3' UTR (NM_001114331, exon 24 of 24) -1745 NM_001143980 645811 Hs.355232 NM_001143980 ENSG00000197599 CCDC154 C16orf29 coiled-coil domain containing 154 protein-coding 120-15 chr1 235852379 235852580 + 0.75 NA TTS (NR_031718) TTS (NR_031718) 581 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 115-11 chr10 22659716 22660000 + 0.75 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 54250 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 136.25 chr1 44494632 44494883 + 0.75 NA intron (NM_001319957, intron 1 of 13) L1ME4b|LINE|L1 -50736 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 125.5-68 chr2 108992808 108992975 + 0.75 NA Intergenic Intergenic -3671 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 228.75-44 chr9 80071633 80072074 + 0.75 NA Intergenic Intergenic 96830 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 118.5-97 chr6 141779256 141779546 + 0.75 NA Intergenic L1MB7|LINE|L1 309398 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 128.75-94 chr9 93065866 93066193 + 0.75 NA intron (NM_001287008, intron 1 of 3) intron (NM_001287008, intron 1 of 3) 7328 NM_145006 203328 Hs.88417 NM_145006 ENSG00000157303 SUSD3 - sushi domain containing 3 protein-coding 165.25 chr1 25062474 25062789 + 0.75 NA Intergenic MIR|SINE|MIR 39128 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 140.5-77 chr4 89971095 89971382 + 0.75 NA Intergenic Intergenic 76384 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 165.75-26 chr16 71776308 71776696 + 0.75 NA intron (NM_001128, intron 2 of 22) intron (NM_001128, intron 2 of 22) -18015 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 185.25-5 chr1 183711112 183711446 + 0.75 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -57963 NM_203454 403314 Hs.97335 NM_203454 ENSG00000173627 APOBEC4 C1orf169 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 protein-coding 113.25-70 chr2 56482001 56482277 + 0.75 NA Intergenic Intergenic -296369 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 141-15 chr12 3120460 3120904 + 0.75 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 43303 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 135.5 chr1 31563321 31563651 + 0.75 NA Intergenic Intergenic -12999 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 162.5-30 chr16 8510356 8510572 + 0.75 NA Intergenic Intergenic 79374 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 129.75-36 chr19 5835378 5835654 + 0.75 NA intron (NM_001369502, intron 1 of 3) AluSq2|SINE|Alu 3276 NM_001369502 2528 Hs.631846 NM_000150 ENSG00000156413 FUT6 FCT3A|FT1A|Fuc-TVI|FucT-VI fucosyltransferase 6 protein-coding 141.75-78 chr6 125845899 125846174 + 0.75 NA intron (NM_001199621, intron 2 of 14) intron (NM_001199621, intron 2 of 14) -27178 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 152.5-56 chr2 232353197 232353483 + 0.75 NA Intergenic Intergenic -25411 NM_001632 250 Hs.284255 NM_001632 ENSG00000163283 ALPP ALP|ALPI|IAP|PALP|PLAP|PLAP-1 alkaline phosphatase, placental protein-coding 123-62 chr7 43656771 43657135 + 0.75 NA intron (NM_001321200, intron 1 of 6) FLAM_C|SINE|Alu 72570 NR_163916 155.5-31 chr13 59285848 59286149 + 0.75 NA Intergenic MIRb|SINE|MIR -726720 NR_046539 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 149.25-15 chr11 124568241 124568589 + 0.75 NA Intergenic Intergenic -1582 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 118-22 chr12 123525802 123526037 + 0.75 NA promoter-TSS (NM_001319302) promoter-TSS (NM_001319302) -961 NM_001319302 353116 Hs.530315 NM_178314 ENSG00000188026 RILPL1 GOSPEL|RLP1 Rab interacting lysosomal protein like 1 protein-coding 147-19 chr12 12705023 12705338 + 0.75 NA Intergenic Alu|SINE|Alu -8997 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 164.5-11 chr10 81094633 81094973 + 0.75 NA Intergenic L1MC1|LINE|L1 445006 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 153-49 chr8 108334623 108334910 + 0.75 NA Intergenic Tigger2|DNA|TcMar-Tigger -86049 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 127.5-10 chr1 195303014 195303293 + 0.75 NA Intergenic Intergenic 785562 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 188.25-45 chr5 32079500 32079929 + 0.75 NA intron (NM_178140, intron 19 of 24) AluSq2|SINE|Alu 94605 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 144.5-7 chr1 175821405 175821664 + 0.75 NA Intergenic Intergenic -55809 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 118.5-111 chr7 138902888 138903132 + 0.75 NA intron (NM_020910, intron 8 of 19) L1ME4a|LINE|L1 78379 NM_001164665 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 121.75-7 chr10 58306541 58306742 + 0.75 NA Intergenic L1M5|LINE|L1 23038 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 132.5-87 chr4 140870078 140870307 + 0.75 NA intron (NM_020724, intron 6 of 6) intron (NM_020724, intron 6 of 6) -113807 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 171-2 chr1 38832263 38832705 + 0.75 NA Intergenic L3|LINE|CR1 27288 NM_022157 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 124.5-74 chr3 191594389 191594748 + 0.75 NA Intergenic Intergenic 133405 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 120.5-48 chr2 99876810 99877030 + 0.75 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 228663 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 144.25-48 chr3 45101120 45101388 + 0.75 NA intron (NM_022842, intron 4 of 8) intron (NM_022842, intron 4 of 8) 45124 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 117.5-18 chr12 116065488 116065757 + 0.75 NA intron (NM_015335, intron 4 of 30) intron (NM_015335, intron 4 of 30) 83032 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 220.25-40 chr8 74967373 74967688 + 0.75 NA Intergenic Intergenic -16975 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 121.25-38 chr2 176526670 176526887 + 0.75 NA Intergenic Intergenic 74274 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 117-46 chr2 234400433 234400633 + 0.75 NA Intergenic Intergenic 54062 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 192.25-38 chr8 85888176 85888686 + 0.75 NA Intergenic Intergenic -60489 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 238.75-7 chr18 6091121 6091712 + 0.75 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -165328 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 156.25-44 chr22 24725130 24725584 + 0.75 NA intron (NM_001008496, intron 17 of 20) MER20|DNA|hAT-Charlie -39144 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 149-7 chr10 67173852 67174157 + 0.75 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 161738 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 177.75-15 chr14 47392310 47392683 + 0.75 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -49250 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 142-3 chr1 64417184 64417436 + 0.75 NA Intergenic Intergenic -52819 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 156.25 chr1 32026129 32026437 + 0.75 NA intron (NR_073498, intron 1 of 8) AluJo|SINE|Alu 12415 NR_073498 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 138.75-4 chr1 70996969 70997314 + 0.75 NA intron (NM_198719, intron 2 of 3) AluSz|SINE|Alu -49365 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 130-26 chr16 74511846 74512122 + 0.75 NA intron (NM_001145666, intron 1 of 25) L1MB7|LINE|L1 -90514 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 129.5-67 chr3 151304407 151304788 + 0.75 NA intron (NM_023915, intron 1 of 2) intron (NM_023915, intron 1 of 2) 12223 NM_023915 53836 Hs.591292 NM_023915 ENSG00000138271 GPR87 FKSG78|GPR95|KPG_002 G protein-coupled receptor 87 protein-coding 155.25-26 chr17 33170825 33171231 + 0.75 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 121960 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 122.25-36 chr17 80072413 80072691 + 0.75 NA intron (NM_017950, intron 10 of 19) intron (NM_017950, intron 10 of 19) -26276 NR_039607 100616121 NR_039607 ENSG00000265561 MIR1268B - microRNA 1268b ncRNA 195-36 chr3 144771853 144772266 + 0.75 NA Intergenic Intergenic 798978 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 121.75-77 chr6 161569311 161569625 + 0.75 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 98491 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 182.5-57 chr5 75725269 75725594 + 0.75 NA intron (NR_149046, intron 2 of 2) LTR26C|LTR|ERV1 -7994 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 138-54 chr5 24491923 24492170 + 0.75 NA intron (NM_001317222, intron 9 of 10) intron (NM_001317222, intron 9 of 10) 152932 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 208.25-49 chr9 84816982 84817376 + 0.75 NA intron (NM_001018064, intron 12 of 17) intron (NM_001018064, intron 12 of 17) 111278 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 113.25-61 chr19 12860922 12861168 + 0.75 NA intron (NM_014975, intron 12 of 25) L2a|LINE|L2 8785 NR_106852 102466196 NR_106852 ENSG00000276181 MIR6794 hsa-mir-6794 microRNA 6794 ncRNA 180.25-54 chr5 126827130 126827513 + 0.75 NA intron (NR_134488, intron 10 of 11) L2b|LINE|L2 50185 NM_001198557 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 166.25-20 chr16 73474638 73474898 + 0.75 NA Intergenic L2a|LINE|L2 87963 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 160.25-39 chr3 72286865 72287294 + 0.75 NA Intergenic Intergenic 135822 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 176-23 chr2 164689084 164689497 + 0.75 NA intron (NM_001365670, intron 13 of 13) intron (NM_001365670, intron 13 of 13) -1513 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 129-87 chrX 24928238 24928455 + 0.75 NA intron (NM_016937, intron 35 of 36) intron (NM_016937, intron 35 of 36) 87619 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 196.25-60 chr7 3263687 3263979 + 0.75 NA Intergenic Intergenic -37419 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 154.5-59 chr4 111877436 111877694 + 0.75 NA Intergenic L2b|LINE|L2 -267889 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 189-4 chr1 88704311 88704629 + 0.75 NA intron (NM_001320708, intron 1 of 20) L1ME1|LINE|L1 -19266 NR_110682 101927891 Hs.637231 NR_110682 ENSG00000237505 PKN2-AS1 - PKN2 antisense RNA 1 ncRNA 145.5-69 chr4 92662346 92662661 + 0.75 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 358104 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 132.5-65 chr20 62834193 62834530 + 0.75 NA intron (NM_001853, intron 26 of 31) intron (NM_001853, intron 26 of 31) -10205 NM_080750 100132911 NM_080750 DPH3P1 C20orf143|DPH3B|ZCSL1 diphthamide biosynthesis 3 pseudogene 1 protein-coding 161.25-24 chr14 86340524 86340839 + 0.75 NA Intergenic L1PA13|LINE|L1 406003 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 168.25-19 chr13 101166471 101166758 + 0.75 NA intron (NM_001350749, intron 15 of 43) L1MB2|LINE|L1 -222250 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 116.5-47 chr17 69961252 69961464 + 0.75 NA promoter-TSS (NR_110874) promoter-TSS (NR_110874) -349 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 152.5-19 chr11 57788278 57788577 + 0.75 NA intron (NM_001085467, intron 1 of 16) intron (NM_001085467, intron 1 of 16) 26625 NM_001206885 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 120-20 chr11 72930155 72930357 + 0.75 NA intron (NM_014824, intron 8 of 19) MER65C|LTR|ERV1 115845 NM_033388 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 138.25-54 chr21 32133679 32134031 + 0.75 NA Intergenic Intergenic -47560 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 128.75-2 chr1 167998108 167998435 + 0.75 NA promoter-TSS (NR_031702) promoter-TSS (NR_031702) -389 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 122.75-64 chr5 39679931 39680309 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger 159689 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 160.75-20 chr14 50320803 50321049 + 0.75 NA intron (NM_001370605, intron 2 of 5) MIR3|SINE|MIR 8602 NM_001003805 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 157.25-8 chr10 15607271 15607555 + 0.75 NA intron (NM_001291494, intron 16 of 28) intron (NM_001291494, intron 16 of 28) 112509 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 146-14 chr13 73075305 73075691 + 0.75 NA intron (NM_001286818, intron 3 of 3) intron (NM_001286818, intron 3 of 3) 16493 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 148.25-16 chr12 34417194 34417528 + 0.75 NA Intergenic ALR/Alpha|Satellite|centr 394865 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 156.75-13 chr10 109128161 109128453 + 0.75 NA Intergenic Intergenic 794939 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 156.75-46 chr2 62029619 62030059 + 0.75 NA intron (NM_001321781, intron 2 of 2) MER39B|LTR|ERV1 124197 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 220-18 chr2 130312139 130312520 + 0.75 NA Intergenic Intergenic 29779 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 152-31 chr18 73484300 73484584 + 0.75 NA Intergenic Intergenic 159501 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 129.5-53 chr21 21556214 21556387 + 0.75 NA Intergenic L1PA16|LINE|L1 181019 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 149.75-8 chr11 66458578 66458827 + 0.75 NA Intergenic MSTA|LTR|ERVL-MaLR -7625 NM_001243135 246330 Hs.656875 NM_145065 ENSG00000174516 PELI3 - pellino E3 ubiquitin protein ligase family member 3 protein-coding 125-56 chr2 226047509 226047891 + 0.75 NA Intergenic Intergenic -95094 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 143-30 chr17 59515722 59516032 + 0.75 NA intron (NR_110813, intron 1 of 2) intron (NR_110813, intron 1 of 2) 10980 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 136.25-11 chr10 89758986 89759336 + 0.75 NA intron (NM_016195, intron 27 of 32) intron (NM_016195, intron 27 of 32) 57571 NM_016195 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 134.75-23 chr17 59241232 59241632 + 0.75 NA intron (NM_182569, intron 2 of 9) AluSq2|SINE|Alu 20921 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 134.75-36 chr2 134276999 134277359 + 0.75 NA intron (NM_001371457, intron 3 of 16) MIR|SINE|MIR 23107 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 237.25-14 chr16 81856861 81857353 + 0.75 NA intron (NM_002661, intron 3 of 32) MLT1D|LTR|ERVL-MaLR 77816 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 247.5-17 chr2 186844967 186845400 + 0.75 NA intron (NM_182521, intron 2 of 8) intron (NM_182521, intron 2 of 8) 3987 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 122.25-50 chr2 54415498 54415739 + 0.75 NA Intergenic L1ME4c|LINE|L1 -40709 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 112.75-20 chr11 41373366 41373615 + 0.75 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 86146 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 320-5 chr18 21253704 21254199 + 0.75 NA intron (NM_001142966, intron 1 of 32) AluJo|SINE|Alu 11709 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 114.75-43 chr18 73960381 73960685 + 0.75 NA Intergenic MIRb|SINE|MIR 187301 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 152.5-103 chr8 126233136 126233486 + 0.75 NA Intergenic Intergenic -92184 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 143-33 chr2 41831647 41831897 + 0.75 NA Intergenic MLT1B|LTR|ERVL-MaLR -45783 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 137.75-60 chr3 159223486 159223761 + 0.75 NA intron (NM_001197113, intron 1 of 10) L1MC5|LINE|L1 -49624 NM_001197108 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 181.25-2 chr1 60596728 60596996 + 0.75 NA intron (NR_146508, intron 2 of 7) MLT1H|LTR|ERVL-MaLR 25823 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 138.75-65 chr6 38823449 38823687 + 0.75 NA exon (NM_001206927, exon 28 of 93) exon (NM_001206927, exon 28 of 93) 108257 NM_001206927 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 113.25-34 chr13 87694120 87694454 + 0.75 NA Intergenic Intergenic 21672 NM_015567 26050 Hs.591208 NM_015567 ENSG00000165300 SLITRK5 LRRC11|bA364G4.2 SLIT and NTRK like family member 5 protein-coding 177.5-18 chr14 74490476 74490739 + 0.75 NA intron (NM_001363688, intron 1 of 3) intron (NM_001363688, intron 1 of 3) 2905 NM_001363688 10577 Hs.433222 NM_006432 ENSG00000119655 NPC2 EDDM1|HE1 NPC intracellular cholesterol transporter 2 protein-coding 119.75-16 chr11 8342778 8343056 + 0.75 NA Intergenic Intergenic -74130 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 176.25-9 chr11 88575154 88575479 + 0.75 NA intron (NM_001143831, intron 6 of 8) MIRb|SINE|MIR 70740 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 156.25-15 chr12 118192653 118192905 + 0.75 NA intron (NM_001346488, intron 14 of 21) intron (NM_001346488, intron 14 of 21) -2244 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 170.25-20 chr14 54012821 54013280 + 0.75 NA Intergenic L1MC1|LINE|L1 -56159 NM_001347913 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 119-70 chr7 103317136 103317350 + 0.75 NA intron (NM_001129887, intron 10 of 14) intron (NM_001129887, intron 10 of 14) 19808 NM_004279 9512 Hs.184211 NM_004279 ENSG00000105819 PMPCB Beta-MPP|MPP11|MPPB|MPPP52|P-52 peptidase, mitochondrial processing beta subunit protein-coding 124.75-22 chr12 56239162 56239385 + 0.75 NA 3' UTR (NM_173595, exon 28 of 28) 3' UTR (NM_173595, exon 28 of 28) 8556 NM_001135195 283375 Hs.591018 NM_173596 ENSG00000139540 SLC39A5 LZT-Hs7|MYP24|ZIP5 solute carrier family 39 member 5 protein-coding 168.25-13 chr11 85973291 85973585 + 0.75 NA intron (NM_001008660, intron 19 of 19) MER44A|DNA|TcMar-Tigger 95646 NM_001008660 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 138.25-91 chr8 117016958 117017222 + 0.75 NA intron (NM_001172813, intron 2 of 10) MIR|SINE|MIR 66115 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 150-45 chr20 57517958 57518277 + 0.75 NA TTS (NM_001269051) TTS (NM_001269051) 6750 NM_001269041 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 121.75-84 chr7 114862764 114862949 + 0.75 NA Intergenic Intergenic -59298 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 253-23 chr7 117494555 117495025 + 0.75 NA intron (NM_000492, intron 1 of 26) intron (NM_000492, intron 1 of 26) 14827 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 CF transmembrane conductance regulator protein-coding 123.25-39 chr2 25529790 25530011 + 0.75 NA intron (NM_033147, intron 9 of 19) HAL1ME|LINE|L1 120322 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 248.25-14 chr2 154522079 154522645 + 0.75 NA Intergenic L1MA2|LINE|L1 -64924 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 153.5-68 chr3 117900750 117900992 + 0.75 NA Intergenic L1MA6|LINE|L1 -209946 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 176.75-3 chr1 161857710 161858121 + 0.75 NA intron (NM_007348, intron 12 of 15) L1MEf|LINE|L1 91595 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 194.25-31 chr2 209633880 209634206 + 0.75 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 54364 NM_031847 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 150-17 chr11 33996545 33996882 + 0.75 NA Intergenic Intergenic -55018 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 179-41 chr3 105633135 105633453 + 0.75 NA Intergenic Intergenic 234297 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 168-19 chr11 127901531 127901835 + 0.75 NA Intergenic Intergenic -307083 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 132.75-51 chr2 1994569 1994802 + 0.75 NA intron (NM_015025, intron 5 of 24) intron (NM_015025, intron 5 of 24) -250170 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 199.75-16 chr19 32533066 32533449 + 0.75 NA Intergenic Intergenic -47933 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 116.75-36 chr19 3714205 3714519 + 0.75 NA intron (NM_001267560, intron 1 of 20) AluSg4|SINE|Alu 5978 NM_001267560 27134 Hs.25527 NM_014428 ENSG00000105289 TJP3 ZO-3|ZO3 tight junction protein 3 protein-coding 115-14 chr10 103115395 103115712 + 0.75 NA intron (NM_001351176, intron 2 of 17) intron (NM_001351176, intron 2 of 17) 38268 NM_001351174 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 171.25-19 chr15 94714918 94715215 + 0.75 NA Intergenic Intergenic -140297 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 158.25-12 chr12 12587870 12588226 + 0.75 NA Intergenic AluJb|SINE|Alu -23828 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 141-62 chr5 75114025 75114340 + 0.75 NA intron (NM_001164443, intron 18 of 24) intron (NM_001164443, intron 18 of 24) -61624 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 130.25-24 chr14 29560869 29561131 + 0.75 NA Intergenic L1MD2|LINE|L1 366096 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 165.75-68 chr7 127562749 127563152 + 0.75 NA Intergenic Tigger17a|DNA|TcMar-Tigger 22646 NM_024523 79571 Hs.521168 NM_024523 ENSG00000179562 GCC1 GCC1P|GCC88 GRIP and coiled-coil domain containing 1 protein-coding 225.5-30 chr22 49495924 49496414 + 0.75 NA intron (NR_110523, intron 1 of 4) AluSx|SINE|Alu 47297 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 123-24 chr15 66794782 66795138 + 0.75 NA Intergenic HERVL40-int|LTR|ERVL 92724 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 155.75-76 chr9 130673063 130673331 + 0.75 NA intron (NM_021619, intron 3 of 4) intron (NM_021619, intron 3 of 4) 8603 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding 146.25-45 chr2 236371516 236371935 + 0.75 NA intron (NR_073043, intron 13 of 19) HAL1M8|LINE|L1 -107380 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 143-79 chrX 72461721 72462023 + 0.75 NA intron (NR_051952, intron 8 of 9) intron (NR_051952, intron 8 of 9) 110971 NR_051952 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 199.75-23 chr3 27661421 27661771 + 0.75 NA Intergenic Intergenic 60727 NM_005442 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 157.25-61 chr8 5037772 5038221 + 0.75 NA Intergenic MER2|DNA|TcMar-Tigger -43082 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 120.5-2 chr1 147270017 147270314 + 0.75 NA intron (NR_046070, intron 10 of 20) intron (NR_046070, intron 10 of 20) 27023 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 180.25-34 chr21 19570844 19571233 + 0.75 NA Intergenic Intergenic 328717 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 134.5-13 chr11 65640999 65641313 + 0.75 NA exon (NM_153253, exon 2 of 16) exon (NM_153253, exon 2 of 16) 1035 NM_153253 6494 Hs.530477 NM_006747 ENSG00000213445 SIPA1 SPA1 signal-induced proliferation-associated 1 protein-coding 149.25-50 chr5 24640048 24640432 + 0.75 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 4738 NM_006727 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 209.5-10 chr15 93474535 93475008 + 0.75 NA Intergenic Intergenic 268705 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 171.5-4 chr1 237495632 237495941 + 0.75 NA intron (NM_001035, intron 19 of 104) intron (NM_001035, intron 19 of 104) 24667 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 223.75-24 chr7 135628013 135628390 + 0.75 NA intron (NM_015135, intron 34 of 42) MIR3|SINE|MIR -34313 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 169.5-18 chr11 127376094 127376360 + 0.75 NA Intergenic LTR16A|LTR|ERVL 105157 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 120-82 chr7 103738376 103738586 + 0.75 NA intron (NM_005045, intron 6 of 64) L1ME2z|LINE|L1 251035 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 150-19 chr11 103186969 103187205 + 0.75 NA intron (NM_001377, intron 42 of 88) intron (NM_001377, intron 42 of 88) 77661 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 155.75-55 chr5 119205217 119205450 + 0.75 NA intron (NM_005509, intron 33 of 42) intron (NM_005509, intron 33 of 42) 50696 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 208-28 chr4 30775911 30776378 + 0.75 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 55775 NM_032456 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 156-51 chr4 181785280 181785545 + 0.75 NA Intergenic Intergenic 44561 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 112.75-27 chr12 123770674 123770933 + 0.75 NA intron (NM_207437, intron 2 of 77) intron (NM_207437, intron 2 of 77) 8308 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 158.75-68 chr8 36889415 36889671 + 0.75 NA intron (NM_001031836, intron 19 of 26) intron (NM_001031836, intron 19 of 26) 105169 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 164.5-7 chr1 247869416 247869799 + 0.75 NA intron (NM_015431, intron 5 of 5) intron (NM_015431, intron 5 of 5) 12420 NM_015431 25893 Hs.269151 NM_015431 ENSG00000162722 TRIM58 BIA2 tripartite motif containing 58 protein-coding 218.25-3 chr1 68950984 68951370 + 0.75 NA Intergenic MLT1A0|LTR|ERVL-MaLR -104721 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 115.75-6 chr1 163257306 163257694 + 0.75 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) -54584 NM_001254749 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 228.25-8 chr10 104214279 104214733 + 0.75 NA intron (NM_025145, intron 3 of 37) intron (NM_025145, intron 3 of 37) 4377 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 148.75-57 chr6 50832020 50832286 + 0.75 NA intron (NM_003221, intron 3 of 6) intron (NM_003221, intron 3 of 6) 13282 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 143.75-11 chr10 63541537 63541801 + 0.75 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -19779 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 120.75-75 chr4 67492482 67492722 + 0.75 NA intron (NM_001812, intron 15 of 18) intron (NM_001812, intron 15 of 18) 52901 NM_001812 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 166.75-56 chr6 130250796 130251150 + 0.75 NA intron (NM_001258275, intron 2 of 13) L1MB7|LINE|L1 -28022 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 115.75-44 chr2 78257794 78257971 + 0.75 NA intron (NR_110288, intron 1 of 3) MER5A|DNA|hAT-Charlie 32849 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 157.75-59 chr4 184242230 184242611 + 0.75 NA Intergenic L1MCa|LINE|L1 -24547 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 147.25-68 chr9 81799208 81799503 + 0.75 NA Intergenic Intergenic 109642 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 153-19 chr2 108409608 108409870 + 0.75 NA Intergenic Intergenic 31785 NM_001321770 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 231.5-25 chr2 189429384 189429768 + 0.75 NA Intergenic LTR87|LTR|ERVL? -11857 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 134.25-33 chr18 45659708 45659908 + 0.75 NA intron (NM_007163, intron 10 of 19) intron (NM_007163, intron 10 of 19) 44332 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 168.5-54 chr3 179371203 179371556 + 0.75 NA intron (NM_033540, intron 9 of 17) AluJo|SINE|Alu 23670 NM_033540 55669 Hs.478383 NM_017927 ENSG00000171109 MFN1 hfzo1|hfzo2 mitofusin 1 protein-coding 163-5 chr1 221619368 221619644 + 0.75 NA Intergenic Intergenic 117394 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 196-36 chr5 74196590 74197021 + 0.75 NA Intergenic Intergenic 111520 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 147.5-10 chr10 42655601 42655952 + 0.75 NA Intergenic AluSp|SINE|Alu -16939 NR_130949 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 189.75-30 chr3 49267829 49268258 + 0.75 NA TTS (NM_198562) TTS (NM_198562) -6077 NR_036233 100422952 NR_036233 ENSG00000264633 MIR4271 - microRNA 4271 ncRNA 135.75-36 chr17 5890160 5890342 + 0.75 NA intron (NR_040000, intron 3 of 3) HAL1|LINE|L1 118017 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 180.5-90 chr8 123656200 123656524 + 0.75 NA Intergenic Intergenic -2561 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 221.25-35 chr8 29169200 29169622 + 0.75 NA intron (NM_015254, intron 10 of 39) intron (NM_015254, intron 10 of 39) 93659 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 196.5-80 chrX 55106896 55107238 + 0.75 NA Intergenic L1MA4|LINE|L1 18049 NM_207339 203569 Hs.662489 NM_207339 ENSG00000234068 PAGE2 CT16.4|GAGEC2|GAGEE2|PAGE-2 PAGE family member 2 protein-coding 143.75-69 chr5 11907778 11908140 + 0.75 NA Intergenic Intergenic -3513 NM_001288717 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 156-7 chr1 162265533 162265815 + 0.75 NA intron (NM_014697, intron 2 of 9) MIRb|SINE|MIR -76872 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 123-4 chr1 183778259 183778568 + 0.75 NA intron (NM_001297669, intron 3 of 18) intron (NM_001297669, intron 3 of 18) -26707 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 142.75-87 chr8 95138055 95138313 + 0.75 NA intron (NM_024613, intron 1 of 1) intron (NM_024613, intron 1 of 1) 4399 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 127.5-11 chr1 197587286 197587498 + 0.75 NA intron (NM_144977, intron 14 of 15) intron (NM_144977, intron 14 of 15) 188088 NM_001195216 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 148.5-6 chr1 238618546 238618933 + 0.75 NA Intergenic Intergenic -132722 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 139-64 chr7 66238437 66238726 + 0.75 NA intron (NM_003596, intron 1 of 5) MLT2C2|LTR|ERVL 33247 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 201.75-41 chr9 114201519 114201841 + 0.75 NA intron (NM_032888, intron 7 of 60) MIR3|SINE|MIR -7754 NR_030255 619556 NR_030255 ENSG00000207726 MIR455 MIRN455|hsa-mir-455|mir-455 microRNA 455 ncRNA 203-13 chr14 77607113 77607471 + 0.75 NA intron (NM_004863, intron 1 of 11) MIR3|SINE|MIR 9475 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 160.5-76 chr8 86827326 86827625 + 0.75 NA Intergenic Intergenic -38940 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 147.5-9 chr10 16846914 16847249 + 0.75 NA intron (NM_001081, intron 60 of 66) L2b|LINE|L2 -29627 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 180-4 chr1 55390500 55390807 + 0.75 NA Intergenic L1PB3|LINE|L1 165012 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 238-39 chr9 3500788 3501391 + 0.75 NA intron (NM_134428, intron 1 of 17) intron (NM_134428, intron 1 of 17) -11602 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 235.25-15 chr20 62471813 62472372 + 0.75 NA intron (NM_080473, intron 3 of 6) intron (NM_080473, intron 3 of 6) 3903 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 142.25-18 chr12 114531418 114531787 + 0.75 NA Intergenic MLT1F2|LTR|ERVL-MaLR -123160 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 161.5-46 chr19 38271371 38271688 + 0.75 NA intron (NM_001166103, intron 1 of 5) L1M4|LINE|L1 6956 NM_021102 10653 Hs.31439 NM_021102 ENSG00000167642 SPINT2 DIAR3|HAI-2|HAI2|Kop|PB serine peptidase inhibitor, Kunitz type 2 protein-coding 163.75-73 chr8 132661168 132661467 + 0.75 NA intron (NR_135913, intron 2 of 10) intron (NR_135913, intron 2 of 10) 14228 NR_135905 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 153-23 chr2 224334702 224335053 + 0.75 NA Intergenic Intergenic 67117 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 133.75-45 chr2 146562762 146562987 + 0.75 NA Intergenic Intergenic -24183 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 158.5-88 chr6 54200323 54200742 + 0.75 NA intron (NM_001281746, intron 10 of 11) intron (NM_001281746, intron 10 of 11) 89089 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 122.5-58 chr3 71342677 71342985 + 0.75 NA intron (NM_001349340, intron 3 of 19) L1MC4a|LINE|L1 -38060 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 146-45 chr5 35509639 35510057 + 0.75 NA Intergenic MLT1A|LTR|ERVL-MaLR -108015 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 114.25-46 chr18 21542837 21543149 + 0.75 NA intron (NM_052911, intron 8 of 11) intron (NM_052911, intron 8 of 11) 57711 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 114.25-27 chr12 48271312 48271570 + 0.75 NA Intergenic AluSx3|SINE|Alu -57539 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 135-21 chr14 45566660 45566863 + 0.75 NA Intergenic Intergenic 148841 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 151.75-52 chr22 42611157 42611496 + 0.75 NA intron (NR_103820, intron 1 of 8) intron (NR_103820, intron 1 of 8) 3557 NM_178136 84271 Hs.505802 NM_032311 ENSG00000100227 POLDIP3 PDIP3|PDIP46|SKAR DNA polymerase delta interacting protein 3 protein-coding 142.25-30 chr18 5222428 5222833 + 0.75 NA Intergenic L1MB5|LINE|L1 15399 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 275.75-7 chr12 92088032 92088475 + 0.75 NA intron (NR_132341, intron 1 of 4) AluY|SINE|Alu 53460 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 122.75-70 chr6 44825674 44826064 + 0.75 NA TTS (NM_001350324) TTS (NM_001350324) -273988 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 122.25-43 chr19 50265935 50266303 + 0.75 NA intron (NM_024729, intron 20 of 40) MER112|DNA|hAT-Charlie 62491 NM_024729 79784 Hs.467142 NM_024729 ENSG00000105357 MYH14 DFNA4|DFNA4A|FP17425|MHC16|MYH17|NMHC II-C|NMHC-II-C|PNMHH|myosin myosin heavy chain 14 protein-coding 166.5-59 chr2 144390133 144390485 + 0.75 NA intron (NM_001171653, intron 8 of 8) intron (NM_001171653, intron 8 of 8) -57240 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 132.25-76 chr5 93152925 93153235 + 0.75 NA Intergenic Intergenic 418263 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 149.75-39 chr22 50664191 50664608 + 0.75 NA Intergenic AluY|SINE|Alu -10243 NM_033517 85358 Hs.149035 NM_033517 ENSG00000251322 SHANK3 DEL22q13.3|PROSAP2|PSAP2|SCZD15|SPANK-2 SH3 and multiple ankyrin repeat domains 3 protein-coding 114.5-108 chr9 4144096 4144331 + 0.75 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 7970 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 155.25-25 chr16 81593618 81593838 + 0.75 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -17620 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 165.25-51 chr6 49837591 49837813 + 0.75 NA intron (NM_170609, intron 6 of 6) intron (NM_170609, intron 6 of 6) -12936 NR_110843 101927048 Hs.742154 NR_110843 LOC101927048 - uncharacterized LOC101927048 ncRNA 133-39 chr2 88508675 88508922 + 0.75 NA Intergenic Intergenic -15851 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 204.5-18 chr14 72882911 72883336 + 0.75 NA intron (NM_001280543, intron 1 of 10) intron (NM_001280543, intron 1 of 10) 9526 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 139-29 chr2 27784679 27784988 + 0.75 NA intron (NM_022128, intron 7 of 7) L2b|LINE|L2 13114 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 179.5-42 chr15 91595103 91595532 + 0.75 NA Intergenic Intergenic 131978 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 127-94 chr8 87908309 87908560 + 0.75 NA Intergenic MER21B|LTR|ERVL -34419 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 148-42 chr3 68002304 68002568 + 0.75 NA intron (NM_001252216, intron 1 of 4) intron (NM_001252216, intron 1 of 4) -1811 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 119.5-118 chr7 145386137 145386371 + 0.75 NA Intergenic L1MA4A|LINE|L1 -550201 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 144.25-39 chr2 89803707 89804036 + 0.75 NA Intergenic Intergenic -165964 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 114-73 chr6 37034530 37034771 + 0.75 NA Intergenic MIRc|SINE|MIR 28995 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 192.5-52 chr7 90493817 90494192 + 0.75 NA intron (NM_001365443, intron 5 of 6) intron (NM_001365443, intron 5 of 6) 24365 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 193.5-65 chr5 145325107 145325655 + 0.75 NA Intergenic Intergenic 509961 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 145.25-64 chr5 121022907 121023278 + 0.75 NA Intergenic Intergenic -299458 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 137-24 chr14 72930524 72930734 + 0.75 NA intron (NM_181340, intron 1 of 12) L1M4|LINE|L1 4165 NM_181340 26094 Hs.331491 NM_015604 ENSG00000119599 DCAF4 WDR21|WDR21A DDB1 and CUL4 associated factor 4 protein-coding 150.5-93 chr8 128317503 128317814 + 0.75 NA Intergenic MER5A|DNA|hAT-Charlie 167542 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 123.5-103 chr8 29900201 29900469 + 0.75 NA Intergenic Intergenic -21178 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 173-49 chr7 2918089 2918320 + 0.75 NA intron (NM_001324281, intron 20 of 25) AluSx1|SINE|Alu -73896 NM_001293092 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 156.25-2 chr1 76795104 76795356 + 0.75 NA Intergenic L1ME4b|LINE|L1 -15963 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 125.5-102 chr5 11272142 11272464 + 0.75 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 316614 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 118-43 chr3 90021174 90021370 + 0.75 NA Intergenic LTR16|LTR|ERVL 913651 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 132-18 chr12 5428060 5428254 + 0.75 NA Intergenic Intergenic -3951 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 229.75-15 chr2 214063466 214063838 + 0.75 NA intron (NR_047660, intron 12 of 14) MLT1A1|LTR|ERVL-MaLR 305585 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 132.5-30 chr14 83010861 83011230 + 0.75 NA Intergenic Intergenic 368413 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 160.75-2 chr1 75363564 75363999 + 0.75 NA intron (NM_001320283, intron 1 of 21) L1MA7|LINE|L1 229393 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 143.75-57 chr21 35395595 35395916 + 0.75 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 185009 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 180.75-20 chr13 52024161 52024567 + 0.75 NA promoter-TSS (NM_021645) promoter-TSS (NM_021645) -327 NM_021645 9724 Hs.512963 NM_021645 ENSG00000253797 UTP14C 2700066J21Rik|KIAA0266|UTP14B UTP14C small subunit processome component protein-coding 182.5-46 chr3 183860213 183860551 + 0.75 NA intron (NM_001324437, intron 4 of 7) intron (NM_001324437, intron 4 of 7) 24498 NM_001037639 55486 Hs.478469 NM_018622 ENSG00000175193 PARL PRO2207|PSARL|PSARL1|PSENIP2|RHBDS1 presenilin associated rhomboid like protein-coding 272.25-16 chr5 33456868 33457388 + 0.75 NA intron (NR_047677, intron 7 of 17) intron (NR_047677, intron 7 of 17) 16352 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 162.5-52 chr21 22490792 22491179 + 0.75 NA Intergenic L1MB3|LINE|L1 392368 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 142.5-63 chr4 69478262 69478544 + 0.75 NA Intergenic L1PB2|LINE|L1 17502 NM_021139 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 174.25-24 chr14 58422677 58422959 + 0.75 NA intron (NM_001304487, intron 1 of 3) AluSx|SINE|Alu 4424 NM_001304486 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 117.75-8 chr10 37735974 37736199 + 0.75 NA Intergenic Intergenic 59089 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 119.5-33 chr14 49369457 49369713 + 0.75 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 216795 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 144.25-69 chr6 49711646 49712026 + 0.75 NA intron (NM_001142417, intron 2 of 9) MIRb|SINE|MIR 1707 NM_001142408 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 163.5-75 chr5 175382083 175382497 + 0.75 NA Intergenic Intergenic 61892 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 202.75-32 chr8 106318783 106319353 + 0.75 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 48890 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 201.5-28 chr19 47133508 47133956 + 0.75 NA intron (NR_027280, intron 1 of 8) L2a|LINE|L2 2897 NR_027280 10055 Hs.515500 NM_005500 ENSG00000142230 SAE1 AOS1|HSPC140|SUA1|UBLE1A SUMO1 activating enzyme subunit 1 protein-coding 168.75-23 chr2 62019410 62019685 + 0.75 NA intron (NM_001321781, intron 2 of 2) MLT1A1|LTR|ERVL-MaLR 113905 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 163.25-50 chr4 86152468 86152744 + 0.75 NA intron (NR_110879, intron 3 of 3) intron (NR_110879, intron 3 of 3) 32800 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 140.75-29 chr2 13983969 13984380 + 0.75 NA Intergenic Intergenic 416784 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 142-26 chr2 7196757 7197049 + 0.75 NA Intergenic Intergenic -119023 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 151.5-34 chr18 3066936 3067223 + 0.75 NA 3' UTR (NM_003803, exon 38 of 38) 3' UTR (NM_003803, exon 38 of 38) -55132 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 146 chr1 46018464 46018680 + 0.75 NA intron (NM_001324320, intron 11 of 29) intron (NM_001324320, intron 11 of 29) 112101 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 154.25-55 chr6 25202479 25202979 + 0.75 NA Intergenic Intergenic 58678 NR_110863 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 147-5 chr1 158753759 158754078 + 0.75 NA promoter-TSS (NM_001005184) promoter-TSS (NM_001005184) -898 NM_001005184 128371 Hs.553591 NM_001005184 ENSG00000180433 OR6K6 OR1-21 olfactory receptor family 6 subfamily K member 6 protein-coding 134.25-16 chr13 44883892 44884103 + 0.75 NA Intergenic LTR80A|LTR|ERVL -74367 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 131-79 chr8 105071310 105071650 + 0.75 NA Intergenic Intergenic -246958 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 121.5-107 chr8 52608807 52609021 + 0.75 NA Intergenic L1ME3|LINE|L1 -43484 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 233.5-40 chr4 40640010 40640632 + 0.75 NA Intergenic MIR3|SINE|MIR -9727 NM_001371114 113.25-36 chr13 111411937 111412174 + 0.75 NA Intergenic Intergenic 91413 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 161.5-19 chr11 59644215 59644638 + 0.75 NA intron (NM_152716, intron 15 of 18) L1MC5a|LINE|L1 24611 NM_152716 219988 Hs.591960 NM_152716 ENSG00000166889 PATL1 Pat1b|hPat1b PAT1 homolog 1, processing body mRNA decay factor protein-coding 160.75-68 chr8 115298839 115299196 + 0.75 NA Intergenic MER113|DNA|hAT-Charlie 368996 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 134.25-59 chr4 39442882 39443190 + 0.75 NA intron (NM_175737, intron 3 of 4) L1MC4|LINE|L1 15912 NM_001024921 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 114-68 chr5 10888649 10888853 + 0.75 NA Intergenic L1ME4c|LINE|L1 -127517 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 122.5-11 chr10 43272664 43272925 + 0.75 NA Intergenic MER44A|DNA|TcMar-Tigger -5729 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 122.5-13 chr10 103179146 103179454 + 0.75 NA intron (NM_001351194, intron 1 of 17) MER41B|LTR|ERV1 -2243 NM_001351179 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 168.25-49 chr5 2068566 2068900 + 0.75 NA Intergenic Intergenic 181402 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 116.75-75 chr7 50308463 50308815 + 0.75 NA promoter-TSS (NM_001291838) promoter-TSS (NM_001291838) -61 NM_001291838 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 163.5-33 chr16 86158868 86159131 + 0.75 NA Intergenic MLT1C|LTR|ERVL-MaLR -37182 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 137.75-75 chr5 170908867 170909102 + 0.75 NA intron (NM_022897, intron 5 of 27) intron (NM_022897, intron 5 of 27) 46966 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 161.25-55 chr3 177246250 177246524 + 0.75 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat -48055 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 122.75-14 chr11 27882515 27882710 + 0.75 NA Intergenic Intergenic -160582 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 146.75-58 chr7 5483962 5484315 + 0.75 NA intron (NM_024963, intron 4 of 4) intron (NM_024963, intron 4 of 4) 11779 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 127.25-18 chr11 78315820 78316047 + 0.75 NA intron (NM_080491, intron 1 of 9) MLT2B3|LTR|ERVL 25947 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 186.5-31 chr2 99411398 99411838 + 0.75 NA intron (NR_135652, intron 13 of 21) AluSq2|SINE|Alu 74229 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 128.25-3 chr1 85756587 85756891 + 0.75 NA intron (NR_146345, intron 55 of 59) L1MB3|LINE|L1 -48306 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 131.25-60 chr3 82620278 82620563 + 0.75 NA Intergenic Intergenic 634278 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 183-52 chr4 124414404 124414745 + 0.75 NA Intergenic Intergenic 143860 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 127.75-98 chr8 136548142 136548475 + 0.75 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 17510 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 142.75-8 chr1 175433957 175434259 + 0.75 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -241121 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 188.75-41 chr6 137652237 137652713 + 0.75 NA Intergenic MER61A|LTR|ERV1 -13171 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 119.25-68 chr3 114870676 114870933 + 0.75 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -2229 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 152-63 chr8 105268668 105269136 + 0.75 NA Intergenic L1M4b|LINE|L1 -49536 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 144.5-85 chr5 16435050 16435399 + 0.75 NA intron (NR_104625, intron 4 of 8) HERV16-int|LTR|ERVL 5878 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 120.75-55 chr2 207383645 207383822 + 0.75 NA Intergenic L1MA4|LINE|L1 -114309 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 160.5-27 chr17 22132759 22132986 + 0.75 NA Intergenic Intergenic -70123 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 117-52 chr3 13581804 13582150 + 0.75 NA intron (NM_001004019, intron 2 of 17) MIRb|SINE|MIR 13237 NM_001165035 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 131.25-50 chr2 241597101 241597505 + 0.75 NA intron (NM_001164356, intron 4 of 4) AluSq2|SINE|Alu 20198 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 128.25-27 chr16 1558058 1558338 + 0.75 NA intron (NM_014714, intron 18 of 30) intron (NM_014714, intron 18 of 30) -22329 NR_135176 105371046 Hs.663325 NR_135176 ENSG00000260989 LOC105371046 - uncharacterized LOC105371046 ncRNA 124.5-7 chr1 147356678 147356967 + 0.75 NA Intergenic L2c|LINE|L2 113680 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 122.75-65 chr5 42266835 42267031 + 0.75 NA Intergenic HAL1b|LINE|L1 -91588 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 161-25 chr14 63895645 63896092 + 0.75 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 42864 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 116-69 chr7 113344729 113344992 + 0.75 NA Intergenic Intergenic -226278 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 174-32 chr2 170427927 170428310 + 0.75 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -77175 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 126.25-30 chr15 61470206 61470469 + 0.75 NA Intergenic Intergenic -241035 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 212-31 chr3 73281587 73281992 + 0.75 NA Intergenic Intergenic 152206 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 136.75-60 chr3 78700399 78700708 + 0.75 NA intron (NM_001145845, intron 6 of 28) intron (NM_001145845, intron 6 of 28) 318906 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 122.25-4 chr1 208439210 208439387 + 0.75 NA Intergenic L2a|LINE|L2 -194914 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 131.5-60 chr3 173205533 173205759 + 0.75 NA Intergenic Intergenic -64411 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 162.5-24 chr13 94309643 94310095 + 0.75 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -121878 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 152.25-26 chr16 7337085 7337309 + 0.75 NA intron (NM_145893, intron 1 of 13) MIR1_Amn|SINE|MIR 4352 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 115.5-7 chr10 43440676 43440939 + 0.75 NA intron (NM_001355444, intron 1 of 3) L1ME3E|LINE|L1 3696 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 134.5-41 chr19 37570821 37571062 + 0.75 NA intron (NR_038250, intron 2 of 2) intron (NR_038250, intron 2 of 2) 19567 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 159.75-40 chr3 156759921 156760221 + 0.75 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 51950 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 129.5-28 chr14 63734119 63734357 + 0.75 NA Intergenic Intergenic -6173 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 146.25-46 chr20 41006188 41006462 + 0.75 NA intron (NR_145525, intron 2 of 2) MER52A|LTR|ERV1 -22497 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 132-57 chr4 131069355 131069633 + 0.75 NA Intergenic L1MB2|LINE|L1 693133 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 144-21 chr12 120116207 120116492 + 0.75 NA intron (NM_006861, intron 1 of 5) intron (NM_006861, intron 1 of 5) 404 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 138.75-79 chr9 18938821 18939078 + 0.75 NA intron (NM_001287050, intron 2 of 2) intron (NM_001287050, intron 2 of 2) 94260 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 160.75-16 chr12 69059048 69059488 + 0.75 NA Intergenic Intergenic -96028 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 139.5-113 chr9 74021615 74021998 + 0.75 NA Intergenic L1MA3|LINE|L1 -349725 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 169.25-25 chr2 18096654 18097063 + 0.75 NA Intergenic Intergenic 218191 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 178.5-66 chr6 55988852 55989331 + 0.75 NA Intergenic L1MA3|LINE|L1 102571 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 143.5-102 chr8 104043777 104044029 + 0.75 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -179432 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 127.75-27 chr14 34267819 34268033 + 0.75 NA Intergenic MER34A|LTR|ERV1 194314 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 131-66 chr7 11888909 11889223 + 0.75 NA Intergenic THE1B|LTR|ERVL-MaLR -56868 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 135.75-81 chr5 140478036 140478337 + 0.75 NA intron (NM_020690, intron 10 of 35) intron (NM_020690, intron 10 of 35) -69476 NM_003732 8637 Hs.594084 NM_003732 ENSG00000243056 EIF4EBP3 4E-BP3|4EBP3 eukaryotic translation initiation factor 4E binding protein 3 protein-coding 230.5-2 chr10 22794777 22795252 + 0.75 NA Intergenic L1ME1|LINE|L1 -80436 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 135.75-33 chr15 27198771 27199301 + 0.5 NA intron (NM_001270873, intron 3 of 5) L1PA7|LINE|L1 -37717 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 113.75-60 chr2 166402617 166403022 + 0.5 NA TTS (NM_002976) TTS (NM_002976) -26832 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 117.25-17 chr10 126097075 126097526 + 0.5 NA intron (NM_001288974, intron 10 of 18) intron (NM_001288974, intron 10 of 18) -124027 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 146.25-61 chr6 45802894 45803337 + 0.5 NA Intergenic L2b|LINE|L2 134482 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 141.75-17 chr12 66829176 66829607 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -25122 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 154.75-24 chr2 25301319 25301797 + 0.5 NA intron (NR_135490, intron 2 of 23) intron (NR_135490, intron 2 of 23) 27163 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 127.5-27 chr12 41132905 41133210 + 0.5 NA Intergenic Intergenic -55263 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 146.5-71 chr5 68489180 68489729 + 0.5 NA Intergenic Intergenic 196877 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 161-10 chr10 101367039 101367361 + 0.5 NA intron (NM_003939, intron 1 of 13) AluSc|SINE|Alu 13035 NM_033637 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 158.75-5 chr10 51183759 51184208 + 0.5 NA intron (NM_001098512, intron 2 of 17) MER117|DNA|hAT-Charlie 109496 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 117.5-2 chr1 86434988 86435329 + 0.5 NA intron (NM_006536, intron 6 of 13) intron (NM_006536, intron 6 of 13) 10987 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 200-12 chr13 37284455 37285243 + 0.5 NA Intergenic MER76-int|LTR|ERVL -179185 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 116.75-5 chr1 215834392 215834693 + 0.5 NA intron (NM_206933, intron 47 of 71) L1ME1|LINE|L1 -237923 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 148.25-60 chr5 166293417 166293859 + 0.5 NA Intergenic Intergenic 632732 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 177.5-42 chr21 14155982 14156380 + 0.5 NA intron (NM_001303000, intron 7 of 9) MLT1D|LTR|ERVL-MaLR 50768 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 190.75-34 chr20 7689134 7689770 + 0.5 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 251006 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 136-73 chrX 69090408 69090877 + 0.5 NA Intergenic MIRb|SINE|MIR 74811 NM_145119 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 146-6 chr11 5078702 5079151 + 0.5 NA Intergenic L1MA5|LINE|L1 9554 NR_145505 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 180.25-64 chr8 31536823 31537218 + 0.5 NA Intergenic Charlie4a|DNA|hAT-Charlie -102732 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 123.5-68 chr3 133568466 133568843 + 0.5 NA Intergenic Intergenic -5032 NM_001134422 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 123.5-35 chr14 71113912 71114259 + 0.5 NA 3' UTR (NM_001308160, exon 34 of 34) 3' UTR (NM_001308160, exon 34 of 34) -206391 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 123.75-33 chr13 21480549 21481036 + 0.5 NA Intergenic AluY|SINE|Alu -21422 NM_001286638 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 119.75-57 chr3 178585523 178585897 + 0.5 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 26860 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 130.25-86 chr8 106873435 106873828 + 0.5 NA Intergenic L1MC4|LINE|L1 -103387 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 169.5-52 chr3 82464443 82464796 + 0.5 NA TTS (NR_147146) TTS (NR_147146) 478477 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 114.25-55 chr2 76850763 76851086 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -135041 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 116.75-41 chr2 72725539 72725927 + 0.5 NA intron (NR_135774, intron 5 of 19) L1MB7|LINE|L1 100300 NR_135774 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 131.25-33 chr14 60253874 60254360 + 0.5 NA intron (NM_177951, intron 2 of 3) intron (NM_177951, intron 2 of 3) 4896 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 182-32 chr3 73886018 73886507 + 0.5 NA Intergenic Intergenic 77018 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 146.5-48 chr2 52563184 52563623 + 0.5 NA Intergenic Intergenic 139212 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 128.5-64 chr3 137188826 137189263 + 0.5 NA Intergenic Intergenic 231061 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 118.75-98 chr9 35854304 35854719 + 0.5 NA 3' UTR (NM_001042590, exon 13 of 13) 3' UTR (NM_001042590, exon 13 of 13) 15890 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 165-8 chr10 109106250 109106788 + 0.5 NA Intergenic Intergenic 816727 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 130.5-113 chrX 95713076 95713596 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 624566 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 169.75-60 chr7 6079146 6079722 + 0.5 NA Intergenic AluSc8|SINE|Alu -20205 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 121.5-94 chr5 17656009 17656466 + 0.5 NA promoter-TSS (NM_001355258) promoter-TSS (NM_001355258) -599 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 114-38 chr15 62382631 62383034 + 0.5 NA Intergenic Intergenic 39803 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 124.75-5 chr1 115933556 115933922 + 0.5 NA intron (NR_125970, intron 2 of 4) intron (NR_125970, intron 2 of 4) 14363 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 147-37 chr2 58204146 58204656 + 0.5 NA intron (NR_156742, intron 1 of 9) intron (NR_156742, intron 1 of 9) 36979 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 116.25-6 chr1 174533296 174533680 + 0.5 NA intron (NM_001366446, intron 13 of 25) Tigger2a|DNA|TcMar-Tigger 85524 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 125.25-52 chr3 27497626 27498040 + 0.5 NA Intergenic Intergenic -13449 NM_001321103 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 128.5-24 chr14 71202127 71202433 + 0.5 NA Intergenic AluJb|SINE|Alu -118196 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 126.25-37 chr18 41590296 41590710 + 0.5 NA Intergenic Intergenic -69826 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 127.75-2 chr1 36195385 36195852 + 0.5 NA Intergenic L1MB3|LINE|L1 -28825 NM_005119 9967 Hs.744057 NM_005119 ENSG00000054118 THRAP3 BCLAF2|TRAP150 thyroid hormone receptor associated protein 3 protein-coding 130-72 chr6 77039825 77040248 + 0.5 NA Intergenic Intergenic 423986 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 157.25-9 chr10 74865772 74866170 + 0.5 NA intron (NM_001370144, intron 3 of 15) MER8|DNA|TcMar-Tigger 39371 NM_001370137 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 144.75-16 chr10 86930597 86930997 + 0.5 NA Intergenic FAM|SINE|Alu -24962 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 168.25-14 chr12 16591999 16592335 + 0.5 NA intron (NR_045014, intron 2 of 3) intron (NR_045014, intron 2 of 3) 13212 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 131.25-11 chr1 213568924 213569287 + 0.5 NA Intergenic Intergenic -355644 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 146-64 chr8 143203989 143204496 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -8976 NM_178172 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 117.25-67 chr4 72221388 72221670 + 0.5 NA Intergenic MIRb|SINE|MIR 182397 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 130.5-35 chr14 54214175 54214485 + 0.5 NA Intergenic AluSx|SINE|Alu -182538 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 133.5-106 chr7 11494509 11495009 + 0.5 NA intron (NM_015204, intron 6 of 26) MIRb|SINE|MIR 337439 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 115.75-32 chr16 63951839 63952133 + 0.5 NA Intergenic L1ME2z|LINE|L1 1170077 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 150.5-36 chr17 28484276 28484760 + 0.5 NA intron (NM_001145975, intron 1 of 11) L2b|LINE|L2 10874 NM_001145975 9058 Hs.102307 NM_003984 ENSG00000007216 SLC13A2 NADC1|NaCT|NaDC-1|SDCT1 solute carrier family 13 member 2 protein-coding 132.25-67 chr4 46745942 46746311 + 0.5 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 163119 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 138-12 chr11 113221538 113222000 + 0.5 NA intron (NM_181351, intron 9 of 18) intron (NM_181351, intron 9 of 18) 52132 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 129.75-65 chr5 32312433 32312694 + 0.5 NA intron (NM_001294344, intron 1 of 13) CpG 376 NM_001294344 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 116.25-27 chr15 78807375 78807775 + 0.5 NA intron (NM_014272, intron 1 of 23) MIR|SINE|MIR 3889 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 129.5-2 chr1 34272371 34272779 + 0.5 NA Intergenic Intergenic 95668 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 144.75-56 chr3 110936139 110936698 + 0.5 NA Intergenic Intergenic 133541 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 124.5-58 chr2 122097748 122098154 + 0.5 NA Intergenic Intergenic 342300 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 146.25-28 chr16 10564326 10564659 + 0.5 NA intron (NM_001424, intron 1 of 4) AluSx1|SINE|Alu 16106 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 118.5-37 chr13 94657620 94657982 + 0.5 NA Intergenic L2a|LINE|L2 50685 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 126.25-9 chr10 14055666 14056138 + 0.5 NA intron (NM_018027, intron 2 of 24) L1MA2|LINE|L1 -18382 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 120-53 chr20 16002737 16003023 + 0.5 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -16998 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 113.25-43 chr15 56000550 56000906 + 0.5 NA Intergenic Intergenic -7116 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 143-44 chr21 25339232 25339539 + 0.5 NA Intergenic L1MC4|LINE|L1 92316 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 145.5-93 chr8 85457502 85457959 + 0.5 NA intron (NR_121633, intron 2 of 2) intron (NR_121633, intron 2 of 2) 5324 NR_121632 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 120 chr1 10584636 10584997 + 0.5 NA intron (NM_004565, intron 3 of 8) L1ME3B|LINE|L1 109866 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 123.25-79 chr9 12719757 12720049 + 0.5 NA intron (NR_125775, intron 3 of 3) intron (NR_125775, intron 3 of 3) 26518 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 200.5-38 chr20 45002989 45003547 + 0.5 NA intron (NM_001352385, intron 9 of 11) AluJr4|SINE|Alu 36756 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 153.5-96 chr9 15470961 15471553 + 0.5 NA 3' UTR (NM_001317898, exon 11 of 11) 3' UTR (NM_001317898, exon 11 of 11) 39032 NM_021144 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 116.5-23 chr11 109909063 109909412 + 0.5 NA Intergenic L1MA4|LINE|L1 -184155 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 118.5-99 chr7 4293306 4293566 + 0.5 NA Intergenic L1ME2|LINE|L1 -158599 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 127-32 chr15 69695151 69695566 + 0.5 NA intron (NR_126437, intron 5 of 5) intron (NR_126437, intron 5 of 5) 103158 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 116-16 chr12 3860615 3860951 + 0.5 NA intron (NM_020367, intron 1 of 7) AluJr4|SINE|Alu 12616 NM_020367 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 120-62 chr3 79936037 79936412 + 0.5 NA Intergenic Intergenic -168226 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 114.5-38 chr18 373520 373881 + 0.5 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -105653 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 116.5-21 chr11 103436154 103436482 + 0.5 NA intron (NM_001377, intron 85 of 88) intron (NM_001377, intron 85 of 88) 326892 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 116.25-56 chr21 32655242 32655669 + 0.5 NA intron (NM_203446, intron 21 of 32) CR1_Mam|LINE|CR1 -42584 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 120-84 chr7 114066088 114066328 + 0.5 NA Intergenic Intergenic -20119 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 131.75-59 chr4 179236799 179237269 + 0.5 NA Intergenic Intergenic -1329098 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 152.25-63 chr8 23725868 23726372 + 0.5 NA Intergenic Intergenic -19522 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 127.5-90 chr4 61191752 61192134 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -9287 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 162.5-28 chr15 69243767 69244207 + 0.5 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) -54925 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 187-57 chr6 145031806 145032306 + 0.5 NA Intergenic Intergenic 626401 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 143.5-88 chr6 103151736 103152234 + 0.5 NA Intergenic L1MA8|LINE|L1 1707561 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 144.25-62 chr5 63635879 63636409 + 0.5 NA Intergenic Kanga1d|DNA|TcMar-Tc2 326148 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 127-84 chr6 101296538 101296953 + 0.5 NA Intergenic Intergenic -102240 NM_001166247 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 116.25-46 chr2 76969288 76969684 + 0.5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -16479 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 114.5-113 chr9 120061642 120061966 + 0.5 NA Intergenic AluSx1|SINE|Alu 126744 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 138.75-70 chr7 51912214 51912591 + 0.5 NA Intergenic Intergenic -519146 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 191-16 chr16 34592566 34593057 + 0.5 NA Intergenic Intergenic -211331 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 122.75 chr1 26374824 26375154 + 0.5 NA Intergenic L1ME3G|LINE|L1 -2195 NM_001307925 257101 Hs.353208 NM_173574 ENSG00000176083 ZNF683 Hobit zinc finger protein 683 protein-coding 122-63 chr5 172839781 172840171 + 0.5 NA intron (NM_001031711, intron 1 of 9) intron (NM_001031711, intron 1 of 9) 5725 NM_001031711 57222 Hs.509163 NM_020462 ENSG00000113719 ERGIC1 AMCN|ERGIC-32|ERGIC32|NET24 endoplasmic reticulum-golgi intermediate compartment 1 protein-coding 152.25-5 chr1 150837029 150837615 + 0.5 NA intron (NM_001286036, intron 6 of 21) intron (NM_001286036, intron 6 of 21) -29062 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 130.75-65 chr6 80972201 80972636 + 0.5 NA Intergenic Intergenic 780263 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 127.75-104 chr9 28131387 28131720 + 0.5 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -557687 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 186.75-31 chr20 56013868 56014395 + 0.5 NA Intergenic Intergenic -8612 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 157-29 chr2 118732848 118733341 + 0.5 NA Intergenic Intergenic 115089 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 143.75-45 chr2 31300500 31300889 + 0.5 NA Intergenic Intergenic 66542 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 135.25-98 chr9 89975205 89975518 + 0.5 NA intron (NR_109791, intron 1 of 2) intron (NR_109791, intron 1 of 2) 5945 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 116.25-28 chr15 100410778 100411239 + 0.5 NA intron (NR_120374, intron 3 of 4) L1MB3|LINE|L1 38069 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 116-53 chr4 127179483 127179908 + 0.5 NA Intergenic Intergenic -453262 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 126-21 chr12 13269561 13269917 + 0.5 NA Intergenic Intergenic 73013 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 144.5-35 chr14 28559801 28560256 + 0.5 NA Intergenic AluJb|SINE|Alu 205291 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 124.25-81 chr8 99145252 99145696 + 0.5 NA intron (NM_017890, intron 13 of 61) L1MD2|LINE|L1 132208 NR_047582 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 142.5-8 chr1 237002283 237002642 + 0.5 NA Intergenic Intergenic 1979 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 146.25-14 chr11 84099253 84099804 + 0.5 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 173752 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150.5-20 chr12 68741819 68742223 + 0.5 NA intron (NM_020401, intron 27 of 27) intron (NM_020401, intron 27 of 27) -4155 NM_001354998 55508 Hs.506011 NM_018656 ENSG00000175782 SLC35E3 BLOV1 solute carrier family 35 member E3 protein-coding 128.25-20 chr12 52510335 52510678 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR 9888 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 148.75-77 chr9 132291221 132291668 + 0.5 NA intron (NM_001351527, intron 15 of 25) AluY|SINE|Alu 63412 NM_001351527 23064 Hs.460317 NM_015046 ENSG00000107290 SETX ALS4|AOA2|SCAN2|SCAR1|Sen1|bA479K20.2 senataxin protein-coding 119-61 chr5 151597522 151597943 + 0.5 NA Intergenic Intergenic -28788 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 134.25-93 chr8 37084288 37084597 + 0.5 NA Intergenic MIR|SINE|MIR 300068 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 133-13 chr12 13809585 13809984 + 0.5 NA intron (NM_000834, intron 2 of 12) L2a|LINE|L2 170572 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 151.75-26 chr14 23510704 23511271 + 0.5 NA promoter-TSS (NR_046051) promoter-TSS (NR_046051) -773 NR_046051 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 121.25-23 chr14 105135892 105136284 + 0.5 NA Intergenic AluJr|SINE|Alu 14776 NR_106823 102465458 NR_106823 ENSG00000273778 MIR6765 hsa-mir-6765 microRNA 6765 ncRNA 127-49 chr2 106734017 106734388 + 0.5 NA Intergenic MER117|DNA|hAT-Charlie 151826 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 287.5-23 chr5 9539588 9540294 + 0.5 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 6134 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 117.5-81 chr6 24613186 24613611 + 0.5 NA intron (NM_001350409, intron 1 of 21) intron (NM_001350409, intron 1 of 21) -30171 NM_001252328 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 155.25-21 chr14 73262339 73262765 + 0.5 NA exon (NM_173462, exon 18 of 26) exon (NM_173462, exon 18 of 26) -16551 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 148.75-64 chr7 13032840 13033326 + 0.5 NA Intergenic Intergenic 345450 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 137.75-10 chr10 111194423 111194758 + 0.5 NA Intergenic L1ME1|LINE|L1 80299 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 129-50 chr4 83642100 83642530 + 0.5 NA Intergenic Intergenic 106207 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 125.75-40 chr2 199398760 199399112 + 0.5 NA intron (NR_134967, intron 3 of 4) intron (NR_134967, intron 3 of 4) 59003 NR_134967 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 152.25-30 chr2 99430584 99431121 + 0.5 NA intron (NR_135652, intron 8 of 21) intron (NR_135652, intron 8 of 21) 59165 NR_135652 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 153.5-62 chr3 43591383 43591861 + 0.5 NA intron (NM_001204833, intron 2 of 10) L1PA5|LINE|L1 30304 NM_001346467 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 114.5-43 chr18 77401045 77401457 + 0.5 NA Intergenic Intergenic 151403 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 140-37 chr2 226089896 226090309 + 0.5 NA Intergenic L1MEf|LINE|L1 -52692 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 130.25-81 chr8 30205381 30205890 + 0.5 NA Intergenic Intergenic 49266 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 118.75-51 chr2 102405859 102406136 + 0.5 NA Intergenic L1MA6|LINE|L1 -12793 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 162.75-9 chr10 59400225 59400683 + 0.5 NA Intergenic L1PA7|LINE|L1 -37273 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 175-34 chr20 49751504 49752054 + 0.5 NA Intergenic AluJb|SINE|Alu -37901 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 145-53 chr4 165062902 165063451 + 0.5 NA Intergenic Intergenic 31177 NM_001258025 166655 Hs.368004 NM_152620 ENSG00000176979 TRIM60 RNF129|RNF33 tripartite motif containing 60 protein-coding 121.25-42 chr3 5158841 5159119 + 0.5 NA intron (NM_018184, intron 1 of 6) intron (NM_018184, intron 1 of 6) -28727 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 130.25-15 chr11 45931274 45931755 + 0.5 NA non-coding (NR_147890, exon 19 of 19) non-coding (NR_147890, exon 19 of 19) 8858 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 115.75-84 chr6 142192699 142193021 + 0.5 NA intron (NM_001286371, intron 5 of 6) L1MC4|LINE|L1 45597 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 126.75-61 chr3 129220166 129220614 + 0.5 NA Intergenic AluSc8|SINE|Alu -29216 NM_016128 22820 Hs.518250 NM_016128 ENSG00000181789 COPG1 COPG coatomer protein complex subunit gamma 1 protein-coding 119.25-46 chr2 32230370 32230816 + 0.5 NA intron (NM_001199138, intron 8 of 8) AluSx|SINE|Alu 34293 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 115.25-89 chr7 48493072 48493424 + 0.5 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 321790 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 154-34 chr2 22125183 22125611 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -411082 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 120.5-90 chr6 56636450 56636728 + 0.5 NA exon (NM_001723, exon 9 of 24) exon (NM_001723, exon 9 of 24) 6300 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 129-74 chr7 91111893 91112349 + 0.5 NA intron (NM_012395, intron 11 of 13) intron (NM_012395, intron 11 of 13) -152312 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 146.25-39 chr2 122325503 122325875 + 0.5 NA Intergenic Intergenic 570038 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 148.75-7 chr10 126416785 126417233 + 0.5 NA intron (NR_073453, intron 2 of 3) intron (NR_073453, intron 2 of 3) 4870 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 117.25-40 chr2 19448087 19448443 + 0.5 NA Intergenic Intergenic -89642 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 159.75-17 chr14 51792228 51792641 + 0.5 NA Intergenic Intergenic -68178 NM_001243773 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 167.25-27 chr14 58360889 58361335 + 0.5 NA intron (NM_002892, intron 19 of 23) intron (NM_002892, intron 19 of 23) -34818 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 114.75-93 chr7 15653693 15654015 + 0.5 NA intron (NM_005924, intron 1 of 2) L1MD1|LINE|L1 -14093 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 118.5-118 chr8 120711840 120712118 + 0.5 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -49274 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 143.75-77 chr7 18953583 18954122 + 0.5 NA intron (NM_058176, intron 22 of 22) intron (NM_058176, intron 22 of 22) 163784 NM_000474 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 172.25-19 chr14 55491541 55492155 + 0.5 NA Intergenic AluSx1|SINE|Alu -51303 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 138.25-61 chr3 121843815 121844192 + 0.5 NA intron (NM_018456, intron 1 of 5) Charlie22a|DNA|hAT-Charlie 8794 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 120.5-74 chr4 41599395 41599674 + 0.5 NA intron (NM_001330786, intron 2 of 22) intron (NM_001330786, intron 2 of 22) -13175 NM_001330793 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 114.5-21 chr15 46025017 46025407 + 0.5 NA Intergenic L1M6|LINE|L1 320017 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 123.5-60 chr20 46802039 46802416 + 0.5 NA Intergenic L1ME5|LINE|L1 -92397 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 141.5-25 chr12 49466666 49467037 + 0.5 NA intron (NM_001293285, intron 4 of 14) L1ME1|LINE|L1 -72179 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 137.5-55 chr2 88054603 88054967 + 0.5 NA intron (NM_001304526, intron 1 of 3) MER67B|LTR|ERV1 998 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 122.25-10 chr10 72586817 72587139 + 0.5 NA intron (NM_006077, intron 1 of 11) L1MC4|LINE|L1 39101 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 113.75-100 chr7 105846135 105846464 + 0.5 NA intron (NM_152749, intron 2 of 3) FLAM_C|SINE|Alu 30286 NM_152749 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 133.75-52 chr21 35864057 35864381 + 0.5 NA Intergenic L1MC5|LINE|L1 -22226 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 124.5-6 chr1 118812050 118812433 + 0.5 NA Intergenic AluJb|SINE|Alu 176102 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 124-75 chrX 81050711 81051192 + 0.5 NA Intergenic Intergenic 150962 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 141.25-28 chr13 112779568 112779907 + 0.5 NA intron (NM_032189, intron 1 of 28) AluSq2|SINE|Alu -25006 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 138.25-90 chr8 116785417 116785699 + 0.5 NA Intergenic L2a|LINE|L2 19034 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 120.25-10 chr10 64313385 64313780 + 0.5 NA Intergenic Intergenic -511946 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 136.5-16 chr11 31982226 31982658 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 58876 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 113-103 chr8 131874275 131874686 + 0.5 NA Intergenic L1MA6|LINE|L1 -29613 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 117.75-41 chr2 172201042 172201404 + 0.5 NA Intergenic Intergenic 98217 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 116.25-57 chr22 31311980 31312438 + 0.5 NA Intergenic L2a|LINE|L2 -19675 NM_001135911 113791 Hs.26670 NM_052880 ENSG00000100100 PIK3IP1 HGFL|TrIP|hHGFL(S) phosphoinositide-3-kinase interacting protein 1 protein-coding 133.75-7 chr1 183422600 183423049 + 0.5 NA Intergenic Intergenic -4444 NM_015039 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 163.75-55 chr5 27108430 27108834 + 0.5 NA Intergenic MER50|LTR|ERV1 -70046 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 143.25-7 chr10 62020257 62020707 + 0.5 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -28875 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 113.5-113 chr7 137180211 137180591 + 0.5 NA Intergenic L1MC4|LINE|L1 -16060 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 148.25-67 chr8 22475078 22475465 + 0.5 NA intron (NM_005605, intron 2 of 13) intron (NM_005605, intron 2 of 13) 34301 NM_001243974 5533 Hs.731683 NM_005605 ENSG00000120910 PPP3CC CALNA3|CNA3|PP2Bgamma protein phosphatase 3 catalytic subunit gamma protein-coding 129.75-9 chr10 20242392 20242793 + 0.5 NA intron (NM_032812, intron 12 of 13) intron (NM_032812, intron 12 of 13) -309378 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 138.75-12 chr12 50178100 50178514 + 0.5 NA intron (NM_001243775, intron 4 of 4) AluSz|SINE|Alu -10774 NM_001281731 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 197.5-43 chr21 34983128 34983704 + 0.5 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 56010 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 147-64 chr5 38714052 38714619 + 0.5 NA intron (NR_104631, intron 3 of 4) intron (NR_104631, intron 3 of 4) 5938 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 120-30 chr14 59428295 59428690 + 0.5 NA Intergenic Intergenic 36888 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 142-68 chr8 38016294 38016659 + 0.5 NA Intergenic MER4B-int|LTR|ERV1 -14058 NM_004095 1978 Hs.411641 NM_004095 ENSG00000187840 EIF4EBP1 4E-BP1|4EBP1|BP-1|PHAS-I eukaryotic translation initiation factor 4E binding protein 1 protein-coding 150.25-52 chr3 79809160 79809480 + 0.5 NA Intergenic Intergenic -41322 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 114.75-94 chr7 16175503 16175948 + 0.5 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -34761 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 134-65 chr6 43563075 43563401 + 0.5 NA TTS (NM_001363658) TTS (NM_001363658) 12800 NM_020750 57510 Hs.203206 NM_020750 ENSG00000124571 XPO5 exp5 exportin 5 protein-coding 120-73 chr5 14623290 14623601 + 0.5 NA Intergenic AluSx|SINE|Alu 28937 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 157-52 chr5 35627497 35628104 + 0.5 NA intron (NM_144722, intron 1 of 9) MIRb|SINE|MIR 9937 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 123-13 chr12 3371124 3371536 + 0.5 NA non-coding (NR_146865, exon 3 of 3) non-coding (NR_146865, exon 3 of 3) 3222 NR_146865 101930162 Hs.351489 NR_146865 LINC02417 - long intergenic non-protein coding RNA 2417 ncRNA 162.75 chr1 108685802 108686250 + 0.5 NA Intergenic Intergenic -6284 NM_001349768 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 131.5-29 chr15 95507771 95508187 + 0.5 NA TTS (NR_027132) TTS (NR_027132) 74886 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 186.5-42 chr3 188286315 188286855 + 0.5 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 61180 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 147.25-70 chrX 98459796 98460325 + 0.5 NA Intergenic L1MB8|LINE|L1 -895525 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 115.5-21 chr11 127959507 127959753 + 0.5 NA Intergenic AluSz6|SINE|Alu -249136 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 142-8 chr10 102001707 102002111 + 0.5 NA intron (NM_024541, intron 15 of 25) intron (NM_024541, intron 15 of 25) 54264 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 147.25-59 chr6 98505151 98505675 + 0.5 NA Intergenic Intergenic 326287 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 130.75-42 chr2 190550999 190551496 + 0.5 NA Intergenic HAL1M8|LINE|L1 -16525 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 121.25-63 chr5 176774089 176774483 + 0.5 NA Intergenic Intergenic 31081 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 141.75-65 chr5 12455988 12456488 + 0.5 NA Intergenic AluSq|SINE|Alu -118619 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 144.75-32 chr17 69787810 69788382 + 0.5 NA intron (NR_109972, intron 3 of 4) Charlie1a|DNA|hAT-Charlie -173611 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 149.25-55 chr5 174482705 174483188 + 0.5 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 146592 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 142.75-74 chr6 47104622 47105114 + 0.5 NA Intergenic Intergenic -62536 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 149.5-89 chr6 8893910 8894477 + 0.5 NA Intergenic L2b|LINE|L2 241984 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 121.5-106 chr8 27853515 27853873 + 0.5 NA Intergenic Intergenic -15877 NM_018492 55872 Hs.104741 NM_018492 ENSG00000168078 PBK CT84|HEL164|Nori-3|SPK|TOPK PDZ binding kinase protein-coding 135.25-26 chr14 40963376 40963807 + 0.5 NA intron (NR_109758, intron 2 of 3) MIR|SINE|MIR 8880 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 114-21 chr12 17332998 17333253 + 0.5 NA Intergenic L2b|LINE|L2 255953 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 134.25-73 chr5 118189358 118189861 + 0.5 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -92965 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 156.75-68 chr4 151745337 151745892 + 0.5 NA intron (NM_001363341, intron 2 of 11) intron (NM_001363341, intron 2 of 11) 15393 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 159.75 chr1 19554017 19554482 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR 42583 NR_135054 105378614 Hs.430098 NR_135054 ENSG00000235185 LOC105378614 - uncharacterized LOC105378614 ncRNA 118.25-57 chr22 27066875 27067282 + 0.5 NA Intergenic Intergenic -6560 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 133-42 chr2 208272751 208273240 + 0.5 NA intron (NM_001178000, intron 2 of 11) L1MC3|LINE|L1 6728 NM_001178000 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 144-49 chr4 30452374 30452724 + 0.5 NA Intergenic Intergenic -267820 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 118.25-52 chr2 224613027 224613345 + 0.5 NA Intergenic Intergenic -27789 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 179-52 chr6 125163810 125164461 + 0.5 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 9889 NM_001292026 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 136.5-24 chr12 39569778 39570218 + 0.5 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 49805 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 113.25-30 chr12 88858501 88858844 + 0.5 NA Intergenic Intergenic 161020 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 153.75-73 chr6 140921156 140921677 + 0.5 NA Intergenic Intergenic 237602 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 145.25-27 chr14 69591121 69591523 + 0.5 NA Intergenic Intergenic -16451 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 116-15 chr11 116893223 116893509 + 0.5 NA intron (NM_001366686, intron 6 of 24) L1MC1|LINE|L1 -55416 NM_001318021 335 Hs.93194 NM_000039 ENSG00000118137 APOA1 apo(a) apolipoprotein A1 protein-coding 118.25-79 chr5 74492725 74493023 + 0.5 NA intron (NR_126354, intron 1 of 2) MER21B|LTR|ERVL 44102 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 116.5-78 chr22 43870218 43870543 + 0.5 NA Intergenic L1PB1|LINE|L1 -7867 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 145.25-10 chr1 222425470 222425946 + 0.5 NA Intergenic Intergenic 122396 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 132.25-80 chr6 49753598 49753933 + 0.5 NA Intergenic L1PREC2|LINE|L1 -9310 NM_001190986 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 125-51 chr2 84739133 84739469 + 0.5 NA intron (NM_001370, intron 62 of 76) L1PA17|LINE|L1 141783 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 149-50 chr7 78162562 78162878 + 0.5 NA intron (NM_001301128, intron 14 of 20) intron (NM_001301128, intron 14 of 20) -184522 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 148.25-50 chr3 70154074 70154481 + 0.5 NA Intergenic MIR|SINE|MIR 154533 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 124.5-37 chr16 3607703 3608172 + 0.5 NA intron (NM_032444, intron 2 of 14) intron (NM_032444, intron 2 of 14) 3669 NM_032444 84464 Hs.143681 NM_032444 ENSG00000188827 SLX4 BTBD12|FANCP|MUS312 SLX4 structure-specific endonuclease subunit protein-coding 126.75-23 chr14 60328579 60329051 + 0.5 NA Intergenic Intergenic 5619 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 125.75-25 chr16 84113365 84113760 + 0.5 NA intron (NM_003791, intron 1 of 22) intron (NM_003791, intron 1 of 22) 3380 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 187.25-43 chr4 37618141 37618610 + 0.5 NA intron (NM_001085400, intron 6 of 6) AluJr|SINE|Alu 34142 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 131-58 chr6 23316090 23316399 + 0.5 NA Intergenic L2c|LINE|L2 -598320 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 162.5-11 chr10 50855017 50855468 + 0.5 NA intron (NM_138933, intron 2 of 12) intron (NM_138933, intron 2 of 12) 30385 NM_001370130 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 120.25-36 chr2 96377625 96378057 + 0.5 NA TTS (NM_001281710) TTS (NM_001281710) 42075 NM_001281712 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 162.75-72 chr8 70421110 70421645 + 0.5 NA Intergenic AluJo|SINE|Alu -17160 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 122.5-92 chr8 78668428 78668772 + 0.5 NA intron (NM_001362969, intron 1 of 9) intron (NM_001362969, intron 1 of 9) 2511 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 126.25-82 chr7 9566538 9566882 + 0.5 NA Intergenic Intergenic -67560 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 127.25-20 chr11 80465686 80466002 + 0.5 NA Intergenic L1PREC2|LINE|L1 296959 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 169.25-51 chr8 20351722 20352102 + 0.5 NA Intergenic Intergenic -47949 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 145.5-16 chr11 6455210 6455615 + 0.5 NA intron (NM_006458, intron 8 of 12) intron (NM_006458, intron 8 of 12) -14425 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 155.75-50 chr5 37241890 37242371 + 0.5 NA intron (NM_023073, intron 6 of 51) AluSx3|SINE|Alu -6916 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 126-54 chr21 26567601 26568014 + 0.5 NA intron (NR_135472, intron 1 of 4) intron (NR_135472, intron 1 of 4) 5479 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 116.5-121 chr8 119058085 119058464 + 0.5 NA intron (NM_001324095, intron 3 of 7) L1ME1|LINE|L1 -8973 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 150-33 chr18 78149132 78149501 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -155589 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 143-16 chr12 19236239 19236647 + 0.5 NA intron (NM_001256787, intron 1 of 25) MIR|SINE|MIR 31118 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 128.5-71 chr4 184729533 184729821 + 0.5 NA intron (NR_104593, intron 2 of 11) Charlie4z|DNA|hAT-Charlie 4419 NR_104593 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 117.25-3 chr1 65264696 65265075 + 0.5 NA 5' UTR (NM_014787, exon 1 of 19) 5' UTR (NM_014787, exon 1 of 19) 136 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 185-7 chr11 85580422 85581040 + 0.5 NA intron (NM_001142699, intron 3 of 27) MIR|SINE|MIR 46539 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 142.25-10 chr10 107653350 107653809 + 0.5 NA Intergenic Intergenic 415714 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 124-8 chr10 52433544 52433848 + 0.5 NA Intergenic MIRc|SINE|MIR 21576 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 129-13 chr11 85625563 85626077 + 0.5 NA intron (NM_001351274, intron 2 of 26) intron (NM_001351274, intron 2 of 26) 1450 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 146.5-8 chr10 18399089 18399496 + 0.5 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -1283 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 113.5-85 chr4 55032048 55032463 + 0.5 NA Intergenic MER112|DNA|hAT-Charlie 93340 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 213.75-48 chr8 81424260 81424914 + 0.5 NA Intergenic Intergenic 22852 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 130.25-78 chr5 156552762 156553202 + 0.5 NA intron (NM_001128209, intron 3 of 7) MSTB1|LTR|ERVL-MaLR 225818 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 136.5-42 chr16 58798206 58798584 + 0.5 NA Intergenic AluSx|SINE|Alu -64079 NM_001286220 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 159.5-41 chr2 59746224 59746660 + 0.5 NA Intergenic Intergenic 528734 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 147.75-12 chr11 29759971 29760371 + 0.5 NA Intergenic Intergenic 141369 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 146.5-67 chr4 59190475 59190969 + 0.5 NA Intergenic Intergenic 177149 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 137.5-39 chr15 80494389 80494886 + 0.5 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 68307 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 159.25-22 chr16 72259719 72260198 + 0.5 NA Intergenic L2|LINE|L2 -87508 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 158.25-66 chr8 86456944 86457260 + 0.5 NA intron (NM_007013, intron 21 of 24) L1MA10|LINE|L1 51584 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 157.75-70 chr7 47599390 47599996 + 0.5 NA Intergenic HUERS-P2-int|LTR|ERV1 -17582 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 143.5-77 chr4 137375933 137376341 + 0.5 NA Intergenic Intergenic 156357 NM_019035 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 120.75-51 chr2 102274384 102274856 + 0.5 NA Intergenic MER4B|LTR|ERV1 -36882 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 157.75-60 chr5 2703710 2704163 + 0.5 NA Intergenic Intergenic -8655 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 148.5-101 chr7 51024366 51024793 + 0.5 NA intron (NM_001346443, intron 11 of 11) intron (NM_001346443, intron 11 of 11) -231126 NM_001371008 141.25-43 chr18 34114663 34114983 + 0.5 NA intron (NM_001353232, intron 2 of 9) intron (NM_001353232, intron 2 of 9) -66211 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 155.25-58 chr5 139878548 139879052 + 0.5 NA intron (NM_013983, intron 3 of 10) intron (NM_013983, intron 3 of 10) 82992 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 121-44 chr3 113657040 113657429 + 0.5 NA exon (NM_001009899, exon 7 of 7) exon (NM_001009899, exon 7 of 7) 39408 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 133.25-22 chr12 127025518 127025981 + 0.5 NA intron (NR_104646, intron 2 of 6) intron (NR_104646, intron 2 of 6) 34648 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 145-68 chr9 595599 595988 + 0.5 NA intron (NM_001256877, intron 2 of 12) AluJr|SINE|Alu -90974 NM_001354335 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 136-62 chr7 42948036 42948480 + 0.5 NA Intergenic LTR24C|LTR|ERV1 15882 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 114.25-95 chr7 4820812 4821236 + 0.5 NA intron (NM_018059, intron 6 of 14) intron (NM_018059, intron 6 of 14) 16426 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 139-44 chr22 27848240 27848737 + 0.5 NA Intergenic Intergenic -46732 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 115.75-78 chr5 79709431 79709839 + 0.5 NA intron (NM_153610, intron 1 of 12) Charlie1|DNA|hAT-Charlie 19799 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 151.5-86 chr8 124510279 124510846 + 0.5 NA intron (NM_001317891, intron 3 of 8) AluJb|SINE|Alu -1986 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 165-3 chr1 195322154 195322534 + 0.5 NA Intergenic L1MA3|LINE|L1 766371 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 132.25-35 chr17 52101295 52101791 + 0.5 NA intron (NM_001082533, intron 2 of 9) LTR82B|LTR|ERVL 57171 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 162.75-69 chr8 8903937 8904416 + 0.5 NA Intergenic MER4E|LTR|ERV1 -10546 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 121-52 chr4 35036026 35036347 + 0.5 NA Intergenic L1MB1|LINE|L1 -766439 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 123.75-49 chr18 35248002 35248409 + 0.5 NA 3' UTR (NM_001135178, exon 4 of 4) 3' UTR (NM_001135178, exon 4 of 4) 7171 NM_032347 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 126-90 chr8 130625604 130625972 + 0.5 NA Intergenic AluSz6|SINE|Alu -182114 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 143.25-10 chr10 96083023 96083380 + 0.5 NA intron (NR_134322, intron 2 of 3) MIRb|SINE|MIR 7034 NR_134320 728558 Hs.538374 NR_038444 ENSG00000226688 ENTPD1-AS1 - ENTPD1 antisense RNA 1 ncRNA 197-16 chr14 91337320 91337781 + 0.5 NA intron (NM_001080414, intron 10 of 29) AluJr|SINE|Alu 80270 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 152.5-25 chr12 7601602 7602159 + 0.5 NA Intergenic HERVP71A-int|LTR|ERV1 64028 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 169.25-28 chr2 28948766 28949104 + 0.5 NA TTS (NM_015131) TTS (NM_015131) 20952 NR_145755 109617012 NR_145755 ENSG00000265706 SNORD53B - small nucleolar RNA, C/D box 53B snoRNA 177.5-51 chr4 108926153 108926722 + 0.5 NA intron (NR_045756, intron 7 of 35) intron (NR_045756, intron 7 of 35) -163384 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 135.75-41 chr19 33958779 33959186 + 0.5 NA Intergenic Intergenic 162112 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 113.75-88 chr5 40530543 40530948 + 0.5 NA Intergenic Intergenic -149170 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 144.75-63 chr4 55164093 55164643 + 0.5 NA Intergenic L1PA6|LINE|L1 -38773 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 152.5-6 chr1 206773819 206774356 + 0.5 NA intron (NM_153758, intron 1 of 6) intron (NM_153758, intron 1 of 6) -1593 NM_000572 3586 Hs.193717 NM_000572 ENSG00000136634 IL10 CSIF|GVHDS|IL-10|IL10A|TGIF interleukin 10 protein-coding 139-72 chr9 356032 356372 + 0.5 NA intron (NM_001193536, intron 13 of 46) intron (NM_001193536, intron 13 of 46) 83154 NM_001193536 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 118.75-65 chr22 35614110 35614448 + 0.5 NA intron (NM_203377, intron 2 of 3) MIR|SINE|MIR 3050 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 113-59 chr22 26306849 26307200 + 0.5 NA intron (NM_001184776, intron 6 of 14) LTR16C|LTR|ERVL -122236 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 126.25-55 chr22 25656804 25657196 + 0.5 NA intron (NM_005160, intron 3 of 20) L2a|LINE|L2 -85188 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 132.75-77 chr5 52551410 52551867 + 0.5 NA Intergenic MLT1G1|LTR|ERVL-MaLR -236278 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 157.25-49 chr3 61165715 61166067 + 0.5 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 85561 NM_001354590 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 180-76 chrX 63663801 63664321 + 0.5 NA intron (NM_001353922, intron 6 of 8) intron (NM_001353922, intron 6 of 8) 7441 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 119.75-59 chr3 196710052 196710407 + 0.5 NA intron (NM_032898, intron 1 of 2) L1ME4a|LINE|L1 2021 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 137.25-3 chr1 76526906 76527316 + 0.5 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 252156 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 140.75-58 chr7 24199336 24199702 + 0.5 NA Intergenic Tigger19a|DNA|TcMar-Tigger -84671 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 164.75-35 chr2 69739217 69739645 + 0.5 NA intron (NM_001320698, intron 3 of 14) AluJr|SINE|Alu -2703 NM_001320700 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 140-4 chr1 244709454 244709850 + 0.5 NA TTS (NR_123735) TTS (NR_123735) 56526 NM_001297746 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 160.25-47 chr5 40341712 40342199 + 0.5 NA Intergenic L1PA6|LINE|L1 289664 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 115.25-74 chr4 172680273 172680656 + 0.5 NA intron (NR_125894, intron 1 of 2) MIR3|SINE|MIR 8453 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 114.25-103 chr8 62524158 62524603 + 0.5 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 275526 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 129.75-63 chr5 19384227 19384613 + 0.5 NA Intergenic Intergenic 501852 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 124.75-86 chr8 126117389 126117750 + 0.5 NA Intergenic Intergenic -166372 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 135-29 chr16 62234845 62235197 + 0.5 NA Intergenic Intergenic -198583 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 137.25-68 chr6 161464403 161464882 + 0.5 NA intron (NM_004562, intron 9 of 11) L1ME1|LINE|L1 -6335 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 114.25-28 chr12 64401833 64402224 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -2364 NM_007235 11260 Hs.85951 NM_007235 ENSG00000184575 XPOT XPO3 exportin for tRNA protein-coding 194.5-9 chr10 77303537 77304134 + 0.5 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 46926 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 157.75-42 chr2 126132169 126132641 + 0.5 NA Intergenic L1ME3B|LINE|L1 -14420 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 134.25-69 chr5 68183124 68183578 + 0.5 NA Intergenic Intergenic -6525 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 126-28 chr14 74243218 74243658 + 0.5 NA intron (NM_182894, intron 2 of 4) intron (NM_182894, intron 2 of 4) 3989 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 114.5-75 chr4 41811389 41811752 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -62600 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 113.75-105 chr8 56824389 56824787 + 0.5 NA Intergenic Intergenic 169279 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 135.75-95 chr7 84512595 84512959 + 0.5 NA Intergenic Intergenic -19699 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 135.5-69 chr22 28132127 28132522 + 0.5 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -211712 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 113.75-82 chr4 70372862 70373303 + 0.5 NA Intergenic LTR45C|LTR|ERV1 -10049 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 113.5-15 chr10 43825304 43825585 + 0.5 NA Intergenic Intergenic -19862 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 153.75-61 chr5 16316530 16316904 + 0.5 NA Intergenic Intergenic 124385 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 137.5-40 chr15 96952509 96952827 + 0.5 NA Intergenic Intergenic 169233 NR_158222 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 115-50 chr22 24021519 24021952 + 0.5 NA intron (NM_001199281, intron 1 of 36) AluSx|SINE|Alu 10365 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 143-73 chr8 71309734 71310246 + 0.5 NA intron (NM_001370336, intron 8 of 17) intron (NM_001370336, intron 8 of 17) 46716 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 125.75-33 chr2 19963062 19963439 + 0.5 NA intron (NM_001006657, intron 10 of 27) HAL1|LINE|L1 26855 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 145.5-62 chr3 3598701 3599079 + 0.5 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -200541 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 135.5-45 chr17 67640744 67641227 + 0.5 NA intron (NM_181671, intron 6 of 9) AluSx|SINE|Alu -76848 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 190.5-66 chr7 3329517 3329975 + 0.5 NA intron (NM_152744, intron 1 of 44) MER2|DNA|TcMar-Tigger 28494 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 113-97 chr7 156508436 156508693 + 0.5 NA intron (NR_026865, intron 2 of 3) THE1B|LTR|ERVL-MaLR -31927 NR_024119 64433 Hs.404170 NR_024119 ENSG00000279418 LINC00244 C7orf4|NCRNA00244 long intergenic non-protein coding RNA 244 ncRNA 157-45 chr4 65245796 65246365 + 0.5 NA Intergenic Intergenic -241580 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 131.75-80 chr8 91548484 91548828 + 0.5 NA Intergenic Intergenic 299337 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 167.75-15 chr12 57548213 57548606 + 0.5 NA Intergenic Charlie18a|DNA|hAT-Charlie -1078 NM_001348066 10540 Hs.289123 NM_006400 ENSG00000175203 DCTN2 DCTN50|DYNAMITIN|HEL-S-77|RBP50 dynactin subunit 2 protein-coding 133.75-79 chr9 29131142 29131536 + 0.5 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 80960 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 118.25-104 chr7 101377074 101377529 + 0.5 NA intron (NM_133457, intron 1 of 12) AluJr4|SINE|Alu 14426 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 147.75-67 chr6 48138115 48138488 + 0.5 NA Intergenic Intergenic -69612 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 112.75-66 chr4 70748753 70749127 + 0.5 NA intron (NM_001291994, intron 2 of 13) MIRc|SINE|MIR 14530 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 141-42 chr2 183527444 183527979 + 0.5 NA Intergenic Intergenic 403268 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 129.25-75 chr8 120800577 120800981 + 0.5 NA intron (NM_021021, intron 1 of 6) L1MEi|LINE|L1 11267 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 119.25-90 chr7 93889586 93889959 + 0.5 NA intron (NM_006528, intron 2 of 4) intron (NM_006528, intron 2 of 4) 981 NM_001271003 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 119.75-61 chr4 46149601 46149918 + 0.5 NA Intergenic L1M5|LINE|L1 -25705 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 122.25-62 chr2_KI270716v1_random 5945 6253 + 0.5 NA NA Intergenic NA NA 202.25-36 chr6 17156828 17157348 + 0.5 NA Intergenic L2a|LINE|L2 54830 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 157.75-66 chr6 89397435 89397751 + 0.5 NA intron (NM_021244, intron 1 of 6) AluYc|SINE|Alu 14680 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 134-35 chr2 85348021 85348445 + 0.5 NA intron (NM_017750, intron 5 of 10) intron (NM_017750, intron 5 of 10) 6295 NM_017750 54884 Hs.440401 NM_017750 ENSG00000042445 RETSAT - retinol saturase protein-coding 218-25 chr2 162515732 162516279 + 0.5 NA intron (NM_033272, intron 4 of 15) intron (NM_033272, intron 4 of 15) 171637 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 137-76 chr9 28576011 28576386 + 0.5 NA intron (NM_152570, intron 2 of 6) MER47B|DNA|TcMar-Tigger 143107 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 218.25-11 chr12 12495280 12495858 + 0.5 NA intron (NM_030640, intron 4 of 6).2 intron (NM_030640, intron 4 of 6).2 67294 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 121.25-89 chr9 28971259 28971711 + 0.5 NA intron (NM_001354574, intron 1 of 5) L1M1|LINE|L1 -82530 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 124.25-90 chrX 45995184 45995572 + 0.5 NA Intergenic L1MA2|LINE|L1 -143888 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 144.5-11 chr1 247052727 247053230 + 0.5 NA intron (NM_033213, intron 1 of 3) L1PBa|LINE|L1 25833 NM_001204220 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 129.75-74 chr7 42008196 42008688 + 0.5 NA intron (NM_000168, intron 10 of 14) FAM|SINE|Alu 228767 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 139.75-39 chr2 26371994 26372411 + 0.5 NA intron (NR_137633, intron 4 of 9) AluSq2|SINE|Alu -25413 NR_135916 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 137.75-56 chr3 99350773 99351185 + 0.5 NA Intergenic Intergenic -287615 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 177.25-41 chr5 60948928 60949500 + 0.5 NA intron (NM_174889, intron 1 of 3) L1ME1|LINE|L1 4009 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 123-58 chr6 140689592 140690049 + 0.5 NA Intergenic Intergenic 6006 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 135.75-4 chr1 52653922 52654401 + 0.5 NA intron (NR_135156, intron 3 of 5) AluJb|SINE|Alu 20993 NR_135157 348378 Hs.424589 NM_001042693 ENSG00000182183 SHISAL2A FAM159A|PRO7171|WWLS2783 shisa like 2A protein-coding 114.5-69 chr3 173464998 173465345 + 0.5 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) 67427 NM_001365926 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 139.5-114 chr9 108023788 108024245 + 0.5 NA Intergenic Intergenic -534247 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 114.75-106 chr8 129772948 129773358 + 0.5 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 13471 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 206.25-21 chr3 81339307 81339789 + 0.5 NA Intergenic Intergenic 345680 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 146.75-72 chrX 99977386 99977812 + 0.5 NA Intergenic Intergenic 432674 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 125-84 chr6 63093510 63093972 + 0.5 NA Intergenic LTR81B|LTR|Gypsy 226236 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 124.75-19 chr11 120408518 120408992 + 0.5 NA intron (NM_001198665, intron 3 of 39) intron (NM_001198665, intron 3 of 39) 23428 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 125.5-72 chr20 57250390 57250784 + 0.5 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 16054 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 115-28 chr15 101391129 101391548 + 0.5 NA intron (NM_138325, intron 8 of 13) intron (NM_138325, intron 8 of 13) 56901 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 128.5-32 chr17 42283198 42283584 + 0.5 NA Intergenic Intergenic -4156 NM_003152 6776 Hs.437058 NM_003152 ENSG00000126561 STAT5A MGF|STAT5 signal transducer and activator of transcription 5A protein-coding 141.75-60 chr4 83215834 83216383 + 0.5 NA Intergenic L1MB3|LINE|L1 68687 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 142-62 chr6 161632897 161633377 + 0.5 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 162160 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 119.5-37 chr15 27033169 27033506 + 0.5 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 62156 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 131-76 chr8 29297382 29297725 + 0.5 NA Intergenic SATR2|Satellite|Satellite -34483 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 118.75-81 chr4 122594754 122595012 + 0.5 NA Intergenic L1ME2|LINE|L1 -24100 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 149.25-47 chr4 58041222 58041712 + 0.5 NA Intergenic Intergenic 494861 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 115.5-55 chr22 49999882 50000253 + 0.5 NA intron (NM_001001694, intron 6 of 14) CpG-19319 12698 NM_001371417 130.75-57 chr4 78947458 78947859 + 0.5 NA Intergenic L1PA16|LINE|L1 -8220 NM_001350105 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 123-49 chr5 132750346 132750709 + 0.5 NA TTS (NM_001098811) TTS (NM_001098811) 3082 NM_001287252 645121 Hs.522057 NM_001039780 ENSG00000205089 CCNI2 - cyclin I family member 2 protein-coding 129-84 chr8 140582586 140583024 + 0.5 NA intron (NM_001164623, intron 2 of 17) L1ME2|LINE|L1 52828 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 133.5-90 chr5 41058049 41058572 + 0.5 NA intron (NM_173489, intron 6 of 41) intron (NM_173489, intron 6 of 41) 13032 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 121-12 chr10 61734741 61735154 + 0.5 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 71986 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 138-84 chrX 154544793 154545321 + 0.5 NA intron (NM_001099856, intron 1 of 9) intron (NM_001099856, intron 1 of 9) 1789 NM_001360016 2539 Hs.461047 NM_000402 ENSG00000160211 G6PD G6PD1 glucose-6-phosphate dehydrogenase protein-coding 128-19 chr16 56709428 56709881 + 0.5 NA Intergenic Intergenic -20475 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 115.75-4 chr1 113206697 113207067 + 0.5 NA promoter-TSS (NR_038846) promoter-TSS (NR_038846) -629 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 139-28 chr2 22390618 22390984 + 0.5 NA Intergenic Intergenic -145678 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 166.75-17 chr14 45565368 45565945 + 0.5 NA Intergenic MIRb|SINE|MIR 149946 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 161.5-33 chr14 75905525 75905883 + 0.5 NA intron (NM_015072, intron 31 of 31) intron (NM_015072, intron 31 of 31) 76291 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 152.5-93 chr7 6695844 6696309 + 0.5 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 10871 NM_006956 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 113-74 chr5 10769647 10769974 + 0.5 NA Intergenic Intergenic -8576 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 154.25-59 chr7 29390350 29390869 + 0.5 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -89103 NR_120525 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 117.5-91 chr7 95569612 95569960 + 0.5 NA Intergenic L1ME1|LINE|L1 26730 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 119-16 chr12 117926868 117927115 + 0.5 NA intron (NM_173598, intron 1 of 19) MIRb|SINE|MIR 41999 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 142.5-70 chr4 144767632 144768194 + 0.5 NA Intergenic L1PA13|LINE|L1 121757 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 112.75-12 chr10 76683821 76684135 + 0.5 NA Intergenic MIR3|SINE|MIR -204066 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 115.5-84 chr6 143840909 143841289 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -2174 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 124.25-19 chr11 77789466 77789809 + 0.5 NA intron (NM_016578, intron 1 of 15) L1M2|LINE|L1 31197 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 115.5-80 chr6 64668940 64669303 + 0.5 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -632297 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 131.5-67 chr4 104381504 104381831 + 0.5 NA Intergenic Intergenic -109298 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 119.25-98 chr8 125851059 125851524 + 0.5 NA Intergenic Intergenic 99906 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 114-57 chr3 145513817 145514045 + 0.5 NA Intergenic MER39|LTR|ERV1 555254 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 124.5-65 chr22 28269914 28270357 + 0.5 NA intron (NM_001145418, intron 5 of 22) MER4D1|LTR|ERV1 -189734 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 116.75-3 chr1 170336698 170336931 + 0.5 NA Intergenic MIR3|SINE|MIR -52606 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 169-15 chr14 29574222 29574875 + 0.5 NA Intergenic L2b|LINE|L2 352548 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 135.75-2 chr1 43271668 43272133 + 0.5 NA intron (NM_001320244, intron 2 of 3) L2c|LINE|L2 1917 NM_144626 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 130.75-76 chr9 84454320 84454811 + 0.5 NA Intergenic Intergenic -85838 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 123.75-88 chr5 122253325 122253792 + 0.5 NA Intergenic L1PB3|LINE|L1 -58133 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 115-52 chr22 29111648 29111921 + 0.5 NA intron (NM_001039570, intron 3 of 8) intron (NM_001039570, intron 3 of 8) 38749 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 119-67 chr7 8162893 8163305 + 0.5 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 98953 NM_001350825 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 139.5-64 chr3 143010541 143011024 + 0.5 NA intron (NM_001080415, intron 1 of 27) intron (NM_001080415, intron 1 of 27) 9212 NM_001320220 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 127.25-19 chr11 79250935 79251353 + 0.5 NA intron (NM_001098816, intron 2 of 33) L1MEd|LINE|L1 150965 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 176.25-66 chr7 78120476 78121161 + 0.5 NA intron (NM_001301128, intron 19 of 20) AluYa5|SINE|Alu -226424 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 116.25-43 chr19 10258049 10258309 + 0.5 NA intron (NM_015956, intron 5 of 8) intron (NM_015956, intron 5 of 8) 5965 NM_015956 51073 Hs.279652 NM_015956 ENSG00000105364 MRPL4 CGI-28|L4mt mitochondrial ribosomal protein L4 protein-coding 136-10 chr11 43885762 43886224 + 0.5 NA intron (NM_139178, intron 4 of 9) L2c|LINE|L2 5162 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 129.75-58 chr3 113689556 113690033 + 0.5 NA intron (NM_001009899, intron 1 of 6) intron (NM_001009899, intron 1 of 6) 6848 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 125.75-27 chr17 58886302 58886728 + 0.5 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 130646 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 140-8 chr10 113879536 113880061 + 0.5 NA intron (NM_198514, intron 4 of 10) intron (NM_198514, intron 4 of 10) 25137 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 143.75-22 chr11 48167609 48168074 + 0.5 NA 3' UTR (NM_002843, exon 25 of 25) 3' UTR (NM_002843, exon 25 of 25) -48969 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 127.75-43 chr18 12252071 12252521 + 0.5 NA Intergenic Intergenic -2065 NR_134607 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 114.25-87 chr5 109619034 109619416 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -70141 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 117.75-70 chr5 179209887 179210352 + 0.5 NA intron (NM_014244, intron 3 of 21) intron (NM_014244, intron 3 of 21) 135342 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 154.75-21 chr16 53035730 53036165 + 0.5 NA non-coding (NR_136518, exon 3 of 3) non-coding (NR_136518, exon 3 of 3) 16926 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 127.5-107 chr6 46524547 46524986 + 0.5 NA intron (NR_125837, intron 1 of 2) MIRb|SINE|MIR -32699 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 121-68 chr7 36335504 36335890 + 0.5 NA intron (NM_001199707, intron 2 of 5) intron (NM_001199707, intron 2 of 5) 31543 NM_015314 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 137.75-77 chr7 37640381 37640799 + 0.5 NA Intergenic L1PA11|LINE|L1 -43176 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 114.25-3 chr1 65786181 65786598 + 0.5 NA Intergenic L1M7|LINE|L1 -6121 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 114-3 chr1 89147830 89148135 + 0.5 NA intron (NM_207398, intron 7 of 10) MIR3|SINE|MIR -21868 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 120.75-19 chr11 124661713 124662050 + 0.5 NA intron (NM_001199922, intron 4 of 11) intron (NM_001199922, intron 4 of 11) 11858 NM_170601 54414 Hs.10056 NM_018978 ENSG00000110013 SIAE AIS6|CSE-C|CSEC|LSE|YSG2 sialic acid acetylesterase protein-coding 127.75-63 chr4 64773119 64773496 + 0.5 NA Intergenic Intergenic 231193 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 116.5-111 chr7 53372739 53373127 + 0.5 NA Intergenic Intergenic 337300 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 188.75-7 chr12 28568068 28568551 + 0.5 NA Intergenic MamSINE1|SINE|tRNA-RTE -377571 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 125.5-97 chr4 134169926 134170320 + 0.5 NA Intergenic L1PA15|LINE|L1 31666 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 113.25-83 chr3 32081650 32082042 + 0.5 NA Intergenic Intergenic -24665 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 114-2 chr1 84916392 84916700 + 0.5 NA Intergenic MER85|DNA|PiggyBac -23340 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 152.75-22 chr16 84405277 84405767 + 0.5 NA intron (NM_014861, intron 3 of 26) intron (NM_014861, intron 3 of 26) -1066 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 133.75-9 chr1 205314414 205314852 + 0.5 NA intron (NM_030952, intron 1 of 6) intron (NM_030952, intron 1 of 6) 7112 NM_030952 81788 Hs.497512 NM_030952 ENSG00000163545 NUAK2 SNARK NUAK family kinase 2 protein-coding 121.5-105 chr8 25861338 25861659 + 0.5 NA intron (NM_022659, intron 11 of 15) intron (NM_022659, intron 11 of 15) 183915 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 123.75-15 chr10 44669612 44669975 + 0.5 NA Intergenic L1MA7|LINE|L1 -241523 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 143.25-8 chr10 75116083 75116463 + 0.5 NA intron (NM_144660, intron 1 of 4) AluJr|SINE|Alu 4617 NM_144660 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 175.5-63 chr6 11994717 11995302 + 0.5 NA intron (NR_125853, intron 1 of 2) HAL1|LINE|L1 6235 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 158.75-58 chr5 65245223 65245576 + 0.5 NA intron (NR_135689, intron 15 of 25) LTR33A_|LTR|ERVL 236521 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 164.75-47 chr3 140796374 140796853 + 0.5 NA Intergenic L1PB1|LINE|L1 118549 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 137.25-69 chr7 542613 543119 + 0.5 NA Intergenic Intergenic -19092 NR_132384 101927000 Hs.551793 NR_132384 ENSG00000229380 LOC101927000 - uncharacterized LOC101927000 ncRNA 163.75-56 chr5 52647836 52648163 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -139917 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 117-44 chr2 203093987 203094327 + 0.5 NA intron (NM_001114132, intron 10 of 54) intron (NM_001114132, intron 10 of 54) 79278 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 116.25-94 chr8 127519195 127519639 + 0.5 NA Intergenic L1MD1|LINE|L1 -37278 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 132.25-23 chr12 42575093 42575447 + 0.5 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) 14476 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 114.5-30 chr17 9853448 9853785 + 0.5 NA intron (NM_004246, intron 4 of 12) L1MEc|LINE|L1 27692 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 119.75-28 chr14 74126649 74127056 + 0.5 NA intron (NM_001024674, intron 5 of 5) L1MB5|LINE|L1 41899 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 143-43 chr2 239110554 239111097 + 0.5 NA intron (NM_006037, intron 14 of 26) intron (NM_006037, intron 14 of 26) -24899 NR_039643 100616493 NR_039643 ENSG00000264810 MIR4441 - microRNA 4441 ncRNA 124.75-49 chr2 167239823 167240168 + 0.5 NA intron (NM_001199144, intron 4 of 8) intron (NM_001199144, intron 4 of 8) 52623 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 121.75-17 chr12 127317394 127317856 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 22447 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 128.25-11 chr10 60903059 60903449 + 0.5 NA intron (NM_001350906, intron 5 of 12) L2c|LINE|L2 40931 NM_001242359 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 128.5-83 chr6 47513331 47513614 + 0.5 NA intron (NM_012120, intron 2 of 17) Tigger9a|DNA|TcMar-Tigger 35683 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 113.5-60 chr2 109436830 109437139 + 0.5 NA exon (NM_001099289, exon 7 of 10) exon (NM_001099289, exon 7 of 10) -123359 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 140.5-91 chr6 9183713 9184056 + 0.5 NA Intergenic Intergenic 531675 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 145.75-18 chr16 46387796 46388285 + 0.5 NA Intergenic Intergenic 181057 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 156.25-67 chr6 139324161 139324605 + 0.5 NA Intergenic Intergenic -32385 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 130.75-24 chr14 81528562 81528893 + 0.5 NA intron (NM_005065, intron 1 of 20) intron (NM_005065, intron 1 of 20) 5126 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 138.25-43 chr2 107449971 107450409 + 0.5 NA Intergenic Intergenic -79229 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 127-47 chr2 76639999 76640496 + 0.5 NA Intergenic Intergenic -345718 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 112.75-65 chr4 35778341 35778680 + 0.5 NA Intergenic MER50|LTR|ERV1 465429 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 122-60 chr5 16830699 16831120 + 0.5 NA intron (NM_012334, intron 2 of 40) L1MD1|LINE|L1 105379 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 148.5-25 chr14 24280515 24280893 + 0.5 NA Intergenic L2a|LINE|L2 -9077 NM_182836 5875 Hs.377992 NM_004581 ENSG00000100949 RABGGTA PTAR3 Rab geranylgeranyltransferase subunit alpha protein-coding 114.75-104 chr8 112615400 112615786 + 0.5 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -27900 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 154.5-28 chr13 94542720 94543230 + 0.5 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 6431 NM_001322182 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 119.25-106 chr9 130734282 130734652 + 0.5 NA intron (NM_007313, intron 1 of 10) AluY|SINE|Alu 20586 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 123-34 chr22 41873486 41873885 + 0.5 NA intron (NR_103834, intron 4 of 21) AmnSINE1|SINE|5S-Deu-L2 -27259 NR_029507 407039 NR_029507 ENSG00000207932 MIR33A MIR33|MIRN33|MIRN33A|hsa-mir-33|hsa-mir-33a|miR-33|miRNA33A|mir-33a microRNA 33a ncRNA 119-64 chr6 49732398 49732718 + 0.5 NA intron (NM_001368123, intron 6 of 7) intron (NM_001368123, intron 6 of 7) 11830 NM_001368123 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 155.75-9 chr10 93858764 93859128 + 0.5 NA Intergenic Intergenic -35032 NM_001134658 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 124-25 chr2 28997457 28997936 + 0.5 NA intron (NM_001321538, intron 2 of 18) intron (NM_001321538, intron 2 of 18) 16398 NM_001321538 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 127.25-38 chr16 77597561 77597933 + 0.5 NA Intergenic Intergenic -124745 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 123.75-90 chr5 171327902 171328316 + 0.5 NA Intergenic Intergenic 18861 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 117.75-50 chr22 40399079 40399468 + 0.5 NA intron (NR_146415, intron 1 of 20) AluSz6|SINE|Alu 28679 NM_001350042 27352 Hs.474914 NM_015705 ENSG00000100359 SGSM3 CIP85|MAP|RABGAP5|RUSC3|RUTBC3|RabGAP-5|rabGAPLP small G protein signaling modulator 3 protein-coding 114.5-17 chr13 58274497 58274790 + 0.5 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -41526 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 122.75-76 chr7 35400481 35400876 + 0.5 NA Intergenic Tigger9b|DNA|TcMar-Tigger 86823 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 120.75-32 chr15 66449699 66449941 + 0.5 NA intron (NM_002755, intron 5 of 10) AluSq2|SINE|Alu 47214 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 123-44 chr4 132645674 132645984 + 0.5 NA intron (NR_126401, intron 2 of 3) HERV16-int|LTR|ERVL 54740 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 145-52 chr4 128571403 128571860 + 0.5 NA Intergenic AluJb|SINE|Alu 143615 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 129.25-19 chr12 24349466 24349950 + 0.5 NA intron (NM_152989, intron 3 of 17) L1MB2|LINE|L1 126437 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 160.25-37 chr20 239561 239973 + 0.5 NA Intergenic Intergenic 12509 NM_080831 140881 Hs.112087 NM_080831 ENSG00000125903 DEFB129 C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29 defensin beta 129 protein-coding 113-66 chr3 160482332 160482769 + 0.5 NA intron (NR_148403, intron 1 of 20) AluJo|SINE|Alu 3197 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 122.75-42 chr2 47019424 47019853 + 0.5 NA intron (NM_001288951, intron 11 of 20) intron (NM_001288951, intron 11 of 20) -77783 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 119.25-65 chr3 10392760 10393101 + 0.5 NA intron (NM_001001331, intron 5 of 22) intron (NM_001001331, intron 5 of 22) 1632 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 113.5-5 chr1 115365176 115365476 + 0.5 NA intron (NR_157569, intron 1 of 1) intron (NR_157569, intron 1 of 1) -27090 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 138.75-86 chrX 67163880 67164242 + 0.5 NA Intergenic L1MA1|LINE|L1 -379960 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 128.75-85 chr7 128692716 128693099 + 0.5 NA Intergenic Intergenic -16154 NM_001282789 84691 Hs.732440 NM_032599 ENSG00000135248 FAM71F1 FAM137A|NYD-SP18 family with sequence similarity 71 member F1 protein-coding 134.5-50 chr21 19054476 19054958 + 0.5 NA Intergenic Intergenic -294905 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 137.25-18 chr11 94961182 94961675 + 0.5 NA Intergenic Intergenic 12128 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 125-50 chr2 59957783 59958202 + 0.5 NA Intergenic Intergenic 425044 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 132-20 chr14 68733496 68733936 + 0.5 NA Intergenic MamSINE1|SINE|tRNA-RTE 60198 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 114-43 chr18 2452467 2452756 + 0.5 NA Intergenic Intergenic 118894 NM_001308401 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 113.5-43 chr15 71875597 71875860 + 0.5 NA intron (NM_006901, intron 32 of 41) intron (NM_006901, intron 32 of 41) 65174 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 116.75-15 chr12 16422450 16422719 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 69167 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 146.25-21 chr13 101110891 101111358 + 0.5 NA intron (NM_001350749, intron 19 of 43) intron (NM_001350749, intron 19 of 43) -166760 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 119-74 chr8 90673532 90673950 + 0.5 NA Intergenic Intergenic -27658 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 127.75-48 chr2 183694108 183694460 + 0.5 NA Intergenic Intergenic 569841 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 127.5-51 chr18 45469637 45469959 + 0.5 NA intron (NR_110899, intron 6 of 7) L2a|LINE|L2 37238 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 112.75-26 chr12 19758685 19759081 + 0.5 NA Intergenic Intergenic -255802 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 136.25-46 chr2 139113544 139113816 + 0.5 NA Intergenic Intergenic 216356 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 174.75-56 chr8 112373058 112373696 + 0.5 NA intron (NM_001363185, intron 34 of 66) intron (NM_001363185, intron 34 of 66) -270116 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 122.25-41 chr18 51212949 51213431 + 0.5 NA Intergenic L1ME4a|LINE|L1 -15509 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 122.25-102 chrX 33958890 33959355 + 0.5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 173208 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 119.5-24 chr11 91846810 91847262 + 0.5 NA Intergenic Intergenic -377998 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 117.75-59 chr4 39303140 39303603 + 0.5 NA intron (NM_001204747, intron 15 of 24) L1ME4b|LINE|L1 62991 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 113.75-119 chrX 97046870 97047294 + 0.5 NA intron (NM_007309, intron 17 of 26) L2|LINE|L2 163174 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 127.75 chr1 14998709 14999079 + 0.5 NA intron (NM_001370231, intron 3 of 8) MIR|SINE|MIR 52975 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 113.75-102 chr7 114791146 114791514 + 0.5 NA Intergenic MER102c|DNA|hAT-Charlie -130824 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 122-35 chr2 33311672 33312022 + 0.5 NA intron (NM_206943, intron 23 of 33) intron (NM_206943, intron 23 of 33) -106669 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 152.5-26 chr12 33294692 33295093 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR 144927 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 119-77 chr9 84022331 84022759 + 0.5 NA Intergenic Intergenic -40898 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 171.25-62 chr9 86032948 86033495 + 0.5 NA intron (NM_016548, intron 9 of 9) intron (NM_016548, intron 9 of 9) 66337 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 136.75-56 chr20 62038138 62038556 + 0.5 NA intron (NM_003185, intron 1 of 14) AluY|SINE|Alu -26455 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 121.75-71 chr5 140633843 140634321 + 0.5 NA promoter-TSS (NM_001040021) promoter-TSS (NM_001040021) -381 NM_001174104 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 119.5-102 chr5 77016754 77017161 + 0.5 NA Intergenic Intergenic -13447 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 118.5-14 chr1 246194192 246194626 + 0.5 NA intron (NM_022743, intron 5 of 11) AluSx4|SINE|Alu 223003 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 124.25-3 chr1 67577749 67578071 + 0.5 NA Intergenic Intergenic -107291 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 128-57 chr5 173070169 173070463 + 0.5 NA intron (NM_001168393, intron 1 of 3) intron (NM_001168393, intron 1 of 3) 13964 NM_153607 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 118.5-74 chr4 30377929 30378373 + 0.5 NA Intergenic Intergenic -342218 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 112.75-18 chr10 107029843 107030161 + 0.5 NA intron (NM_001206569, intron 1 of 25) L2c|LINE|L2 134704 NM_001206570 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 143.75-46 chr2 33465146 33465618 + 0.5 NA intron (NM_001349979, intron 1 of 17) Tigger1|DNA|TcMar-Tigger 7327 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 124.25-15 chr10 96308812 96309185 + 0.5 NA intron (NM_004088, intron 1 of 10) LTR7B|LTR|ERV1 4564 NM_001017520 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 152.5-41 chr16 25682052 25682546 + 0.5 NA Intergenic AluSx1|SINE|Alu -9660 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 119-29 chr15 79323644 79324116 + 0.5 NA intron (NM_001330376, intron 2 of 2) Charlie2b|DNA|hAT-Charlie 12768 NM_007364 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 117.75-37 chr2 45871657 45871955 + 0.5 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 220131 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 117.25-99 chrUn_KI270511v1 1335 1706 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 120.25-60 chr5 101428465 101428706 + 0.5 NA Intergenic Intergenic -525303 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 140.5-53 chr2 229419446 229419887 + 0.5 NA intron (NM_139072, intron 8 of 12) intron (NM_139072, intron 8 of 12) -148379 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 145-10 chr12 26477453 26477825 + 0.5 NA intron (NM_002223, intron 43 of 56) intron (NM_002223, intron 43 of 56) 282066 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 120-68 chr4 49708300 49708631 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 721823 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 124.5-5 chr1 113490654 113490966 + 0.5 NA intron (NM_001142782, intron 1 of 20) L1PA13|LINE|L1 100295 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 142.25-50 chr4 103839132 103839654 + 0.5 NA Intergenic Intergenic -119408 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 143-3 chr1 235862981 235863525 + 0.5 NA intron (NR_102436, intron 1 of 3) AluSc8|SINE|Alu 3674 NM_000081 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 120.75-99 chr8 122373004 122373399 + 0.5 NA Intergenic Intergenic 195443 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 160.75-39 chr20 49325014 49325451 + 0.5 NA Intergenic MIR|SINE|MIR 44549 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 121.5-87 chr4 43460730 43461148 + 0.5 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 31604 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 143.25-48 chr3 52044724 52045085 + 0.5 NA Intergenic MIRc|SINE|MIR 11667 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 124.25-53 chr20 8323293 8323749 + 0.5 NA intron (NM_182734, intron 2 of 32) MLT1G|LTR|ERVL-MaLR 74817 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 157.75-41 chr2 84217218 84217609 + 0.5 NA Intergenic Intergenic -73269 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 127.5-18 chr10 91987926 91988355 + 0.5 NA intron (NM_003972, intron 19 of 37) intron (NM_003972, intron 19 of 37) 64370 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 131.5-75 chr5 51029403 51029801 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -59415 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 125.75-49 chr3 44066405 44066787 + 0.5 NA Intergenic MER91A|DNA|hAT-Tip100 -47616 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 121-10 chr1 229598362 229598662 + 0.5 NA TTS (NM_001025247) TTS (NM_001025247) 27535 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 159-28 chr16 64402567 64402972 + 0.5 NA Intergenic (ACATTTG)n|Simple_repeat|Simple_repeat 719294 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 135.75-91 chr7 41829174 41829588 + 0.5 NA Intergenic Intergenic -126291 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 117-90 chr9 119360097 119360386 + 0.5 NA intron (NM_014618, intron 1 of 7) intron (NM_014618, intron 1 of 7) 9194 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 133.75-6 chr1 170563930 170564446 + 0.5 NA Intergenic Intergenic -31579 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 140.75-26 chr17 17628639 17629049 + 0.5 NA Intergenic Intergenic -37136 NM_001267552 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 172-39 chr6 54375699 54376304 + 0.5 NA intron (NM_014464, intron 9 of 10) L2c|LINE|L2 67560 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 151.75-25 chr13 113189388 113189848 + 0.5 NA intron (NM_001353095, intron 7 of 14) L1MEf|LINE|L1 -18575 NM_001278513 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 130-54 chr3 167860784 167861256 + 0.5 NA Intergenic Intergenic -34928 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 202.5-34 chr4 56472373 56473055 + 0.5 NA intron (NR_151856, intron 3 of 19) X7B_LINE|LINE|CR1 5097 NR_151856 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 123.5-71 chr3 157133641 157134063 + 0.5 NA Intergenic MIR|SINE|MIR -10850 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 142.25-34 chr19 52308648 52308992 + 0.5 NA intron (NM_001297625, intron 2 of 3) intron (NM_001297625, intron 2 of 3) 11651 NM_144684 147657 Hs.729317 NM_144684 ENSG00000198464 ZNF480 - zinc finger protein 480 protein-coding 136-36 chr2 125485412 125485899 + 0.5 NA Intergenic Intergenic 632330 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 126.75-10 chr10 30821322 30821633 + 0.5 NA Intergenic Intergenic 98258 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 122.25-33 chr17 10364894 10365246 + 0.5 NA intron (NM_003802, intron 2 of 40) AluSq2|SINE|Alu 7936 NM_003802 8735 Hs.711142 NM_003802 ENSG00000006788 MYH13 MyHC-IIL|MyHC-eo myosin heavy chain 13 protein-coding 135-3 chr1 72689263 72689747 + 0.5 NA Intergenic MER50-int|LTR|ERV1 -406966 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 152-13 chr10 125552789 125553136 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR -21409 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 122-26 chr15 76001643 76002083 + 0.5 NA intron (NM_138573, intron 3 of 5) L1MEg|LINE|L1 10561 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 193.25-42 chr7 14858400 14858896 + 0.5 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -17198 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 122-76 chr9 99137937 99138371 + 0.5 NA intron (NM_004612, intron 4 of 8) intron (NM_004612, intron 4 of 8) 33041 NM_001130916 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 136.5-103 chr7 110394667 110395104 + 0.5 NA Intergenic L1MA10|LINE|L1 -434672 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 114.75-74 chr4 160092370 160092803 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -314802 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 113.5-18 chr10 68316396 68316760 + 0.5 NA intron (NM_001033083, intron 1 of 8) L1M4|LINE|L1 -15115 NM_001322445 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 155.75-19 chr16 65848285 65848881 + 0.5 NA Intergenic Intergenic -272283 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 167.25-56 chr4 80666911 80667369 + 0.5 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 331420 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 145.25-72 chr6 87463080 87463557 + 0.5 NA intron (NM_001031743, intron 12 of 12) MER110A|LTR|ERV1 -9607 NM_001168398 10559 Hs.423163 NM_006416 ENSG00000164414 SLC35A1 CDG2F|CMPST|CST|hCST solute carrier family 35 member A1 protein-coding 117-43 chr2 194970218 194970583 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger 239805 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 122-45 chr3 4232874 4233210 + 0.5 NA Intergenic Intergenic -70262 NM_001276325 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 153.75-77 chr7 65238851 65239462 + 0.5 NA Intergenic Intergenic 98126 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 131.25-52 chr20 35127805 35128201 + 0.5 NA intron (NM_001145025, intron 6 of 9) Tigger3b|DNA|TcMar-Tigger 19333 NM_018217 55741 Hs.720177 NM_018217 ENSG00000088298 EDEM2 C20orf31|C20orf49|bA4204.1 ER degradation enhancing alpha-mannosidase like protein 2 protein-coding 124.75-14 chr10 56122325 56122772 + 0.5 NA Intergenic Intergenic 238711 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 144.25-67 chr5 164120351 164120905 + 0.5 NA Intergenic MIR|SINE|MIR 346774 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 174.5-17 chr12 20411894 20412480 + 0.5 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 42942 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 201-37 chr4 76445401 76445880 + 0.5 NA intron (NM_020859, intron 1 of 10) L2a|LINE|L2 10411 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 133.25-63 chr5 37326151 37326526 + 0.5 NA intron (NM_001278312, intron 18 of 33) MLT1H|LTR|ERVL-MaLR 44768 NM_004298 9631 Hs.547696 NM_004298 ENSG00000113569 NUP155 ATFB15|N155 nucleoporin 155 protein-coding 127.25-88 chr7 34849572 34849938 + 0.5 NA 3' UTR (NM_001300935, exon 10 of 10) 3' UTR (NM_001300935, exon 10 of 10) -15424 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 168.25-64 chr8 118765039 118765461 + 0.5 NA Intergenic Intergenic -143287 NM_001349811 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 127-85 chr6 153667590 153667916 + 0.5 NA Intergenic Intergenic -342743 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 149.5-100 chr7 97447475 97448067 + 0.5 NA Intergenic MIRc|SINE|MIR -284315 NM_013998 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 119-56 chr4 68208637 68209104 + 0.5 NA intron (NR_104048, intron 2 of 9) intron (NR_104048, intron 2 of 9) 9210 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 127.25-67 chr4 40003607 40004036 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB -25865 NM_001100400 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 119.75-83 chr8 36420981 36421297 + 0.5 NA Intergenic Intergenic -363235 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 120.5-73 chr4 32872950 32873411 + 0.5 NA Intergenic Intergenic 522142 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 150.5-58 chr3 86893675 86894273 + 0.5 NA Intergenic Intergenic 97175 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 140.25-40 chr2 182979534 182979935 + 0.5 NA intron (NM_013436, intron 13 of 30) intron (NM_013436, intron 13 of 30) 58723 NM_205842 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 118.75-67 chr3 15784704 15785068 + 0.5 NA intron (NM_001349284, intron 2 of 2) L1M4c|LINE|L1 13093 NM_001349284 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 120.5-30 chr13 94487665 94487981 + 0.5 NA intron (NM_001322185, intron 1 of 7) intron (NM_001322185, intron 1 of 7) -8141 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 134.75-3 chr1 94750534 94750967 + 0.5 NA intron (NR_160781, intron 1 of 4) Ricksha_a|DNA|MULE-MuDR -4850 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 137.5-124 chr9 14555034 14555384 + 0.5 NA Intergenic Intergenic -23132 NM_001369459 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 142-20 chr13 113388724 113389115 + 0.5 NA Intergenic MER41-int|LTR|ERV1 -24771 NM_001286733 79774 Hs.745043 NM_024719 ENSG00000139835 GRTP1 TBC1D6 growth hormone regulated TBC protein 1 protein-coding 116.5-96 chr5 168727474 168727787 + 0.5 NA intron (NM_003062, intron 20 of 35) intron (NM_003062, intron 20 of 35) 20703 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 118.5-68 chr3 7823515 7823862 + 0.5 NA Intergenic L1MA4A|LINE|L1 192619 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 119.25-57 chr2 201673352 201673796 + 0.5 NA intron (NM_033066, intron 11 of 21) L1PA7|LINE|L1 25070 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 151.25-43 chr5 12573156 12573585 + 0.5 NA Intergenic Intergenic -1487 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 121.25-62 chr5 122616973 122617423 + 0.5 NA Intergenic LTR7|LTR|ERV1 -32598 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 165-30 chr2 77693669 77694252 + 0.5 NA Intergenic L1ME1|LINE|L1 -171527 NM_001282924 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 159.25-49 chr3 65159625 65159943 + 0.5 NA Intergenic L1MB7|LINE|L1 -471784 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 117-30 chr19 27732544 27732859 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr -60730 NR_146733 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 113-79 chr5 44312032 44312434 + 0.5 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -76499 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 128.75-78 chr6 37944133 37944483 + 0.5 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 124581 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 124.25 chr1 13403326 13403625 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -6975 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 128-41 chr3 178865970 178866248 + 0.5 NA Intergenic L1ME3G|LINE|L1 -5704 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 114-19 chr12 7750351 7750783 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR -1026 NM_203503 170482 Hs.351812 NM_130441 ENSG00000198178 CLEC4C BDCA2|CD303|CLECSF11|CLECSF7|DLEC|HECL|PRO34150 C-type lectin domain family 4 member C protein-coding 149.5-91 chr6 24246555 24247101 + 0.5 NA intron (NM_016356, intron 7 of 9) intron (NM_016356, intron 7 of 9) -110075 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 118.5-38 chr13 111221259 111221585 + 0.5 NA intron (NM_001330597, intron 5 of 18) (AT)n|Simple_repeat|Simple_repeat 18362 NM_001320853 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 115-66 chr6 68410205 68410487 + 0.5 NA Intergenic Intergenic -80447 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 180.75-33 chr17 47942408 47942843 + 0.5 NA intron (NM_018129, intron 1 of 6) intron (NM_018129, intron 1 of 6) 1054 NM_018129 55163 Hs.631742 NM_018129 ENSG00000108439 PNPO HEL-S-302|PDXPO pyridoxamine 5'-phosphate oxidase protein-coding 118.25-23 chr12 66130127 66130406 + 0.5 NA promoter-TSS (NR_125724) promoter-TSS (NR_125724) 484 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 118-39 chr2 101912043 101912457 + 0.5 NA Intergenic L1MB2|LINE|L1 -71215 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 116-14 chr11 114430168 114430587 + 0.5 NA Intergenic Intergenic -9090 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 147-7 chr1 233848319 233848813 + 0.5 NA Intergenic L1MD1|LINE|L1 -56110 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 126-44 chr2 64446017 64446394 + 0.5 NA Intergenic L1MA4A|LINE|L1 -7957 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 122-80 chrX 94175284 94175610 + 0.5 NA Intergenic L2a|LINE|L2 501241 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 138.75-18 chr14 68545770 68546297 + 0.5 NA intron (NM_001321818, intron 10 of 10) L2b|LINE|L2 82754 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 118.75-17 chr11 115777289 115777710 + 0.5 NA Intergenic Intergenic -17299 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 138.75-47 chr3 177773966 177774346 + 0.5 NA Intergenic Intergenic -42709 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 122.25-44 chr2 13351406 13351742 + 0.5 NA Intergenic Intergenic -344561 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 172.75-24 chr20 62559522 62560016 + 0.5 NA intron (NM_001302812, intron 3 of 4) intron (NM_001302812, intron 3 of 4) -5143 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 121.75-86 chr8 8688905 8689385 + 0.5 NA Intergenic AluSz6|SINE|Alu -12792 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 129.25-11 chr10 92684716 92685170 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -5012 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 150.75-3 chr1 225275564 225276021 + 0.5 NA intron (NM_001367479, intron 52 of 85) Charlie4a|DNA|hAT-Charlie 152246 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 121.5-58 chr2 21667134 21667605 + 0.5 NA Intergenic Intergenic 43283 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 140-43 chr3 100924404 100924797 + 0.5 NA intron (NM_001349332, intron 2 of 35) L1MC5a|LINE|L1 68890 NM_001365642 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 145.25-84 chr8 127350198 127350691 + 0.5 NA intron (NR_117099, intron 3 of 3) Charlie2b|DNA|hAT-Charlie -49955 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 162.25-3 chr10 44973032 44973549 + 0.5 NA intron (NM_032023, intron 3 of 10) intron (NM_032023, intron 3 of 10) 5519 NM_007021 11067 Hs.93675 NM_007021 ENSG00000165507 DEPP1 C10orf10|DEPP|FIG|Fseg DEPP1 autophagy regulator protein-coding 135.75-3 chr1 44711024 44711345 + 0.5 NA intron (NM_001145636, intron 6 of 11) L1MB5|LINE|L1 10717 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 158.75-9 chr11 4679747 4680120 + 0.5 NA TTS (NM_030774) TTS (NM_030774) 17920 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 141-8 chr1 204306417 204306725 + 0.5 NA intron (NM_014935, intron 1 of 22) intron (NM_014935, intron 1 of 22) 53358 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 113-100 chr8 66353697 66354042 + 0.5 NA Intergenic Intergenic 75108 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 113.25-32 chr13 66187414 66187697 + 0.5 NA Intergenic Intergenic -30695 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 117.25-4 chr1 74124740 74125060 + 0.5 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 73276 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 132.75 chr1 23360654 23361137 + 0.5 NA 3' UTR (NM_001077195, exon 4 of 4) 3' UTR (NM_001077195, exon 4 of 4) 7491 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 155.25-55 chr5 54611840 54612228 + 0.5 NA Intergenic AluJr4|SINE|Alu 91290 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 121-37 chr2 75491345 75491742 + 0.5 NA TTS (NM_001135032) TTS (NM_001135032) -32525 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 137.25-75 chr8 50798977 50799443 + 0.5 NA Intergenic Intergenic 635079 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 123.5-15 chr10 97329392 97329845 + 0.5 NA Intergenic AluSz|SINE|Alu 5111 NM_012083 23401 Hs.140720 NM_012083 ENSG00000181274 FRAT2 FRAT-2 FRAT regulator of WNT signaling pathway 2 protein-coding 153.75-24 chr13 109274651 109275031 + 0.5 NA Intergenic Intergenic -107538 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 142.5-6 chr1 224475608 224476009 + 0.5 NA intron (NM_001322302, intron 2 of 6) L1M1|LINE|L1 40959 NR_136291 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 119.75-39 chr18 30824745 30825212 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 217764 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 127.5-79 chr3 56491258 56491727 + 0.5 NA Intergenic Intergenic -23025 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 116.5-32 chr13 57095408 57095799 + 0.5 NA Intergenic MSTD|LTR|ERVL-MaLR -45315 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 114.5-13 chr12 64101332 64101561 + 0.5 NA intron (NM_001346201, intron 15 of 21) intron (NM_001346201, intron 15 of 21) 120850 NM_152440 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 152.5-30 chr14 37493262 37493653 + 0.5 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 101792 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 143.75-4 chr1 61744469 61744876 + 0.5 NA intron (NM_001350145, intron 1 of 43) MER21A|LTR|ERVL 2192 NM_176877 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 113.5-20 chr11 21529038 21529301 + 0.5 NA intron (NM_201551, intron 15 of 18) MLT1J1|LTR|ERVL-MaLR -663916 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 180.75-18 chr12 47632925 47633530 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 72803 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 118.5-44 chr17 7992381 7992795 + 0.5 NA Intergenic MLT1K-int|LTR|ERVL-MaLR -10082 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CACD1|CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 162.25-44 chr7 141766846 141767231 + 0.5 NA Intergenic Intergenic 2941 NM_016943 50831 Hs.676011 NM_016943 ENSG00000127362 TAS2R3 T2R3 taste 2 receptor member 3 protein-coding 123.25-29 chr16 7053034 7053354 + 0.5 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) 279385 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 151-41 chr22 49304815 49305180 + 0.5 NA Intergenic Intergenic 238469 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 114.5-77 chr4 60795071 60795366 + 0.5 NA Intergenic L4_C_Mam|LINE|RTE-X -127401 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 152.5-101 chr8 108655945 108656403 + 0.5 NA intron (NR_136411, intron 1 of 3) LTR79|LTR|ERVL 131420 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 126.5-22 chr11 80762944 80763381 + 0.5 NA promoter-TSS (NR_120570) promoter-TSS (NR_120570) -359 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 125.5-47 chr15 54405855 54406145 + 0.5 NA intron (NM_001329919, intron 17 of 31) MER39|LTR|ERV1 393352 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 112.75-50 chr2 137080984 137081356 + 0.5 NA intron (NM_001316349, intron 3 of 27) L1MC4|LINE|L1 315625 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 129.5-47 chr2 144447754 144448132 + 0.5 NA intron (NM_001171653, intron 2 of 8) MIR|SINE|MIR -71671 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 123.75-94 chr6 149831368 149831784 + 0.5 NA intron (NM_032832, intron 5 of 6) intron (NM_032832, intron 5 of 6) -31922 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 131.75-78 chr8 47979827 47980347 + 0.5 NA Intergenic Intergenic 19146 NM_182746 4173 Hs.460184 NM_005914 ENSG00000104738 MCM4 CDC21|CDC54|IMD54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 126.75-19 chr13 45399618 45399886 + 0.5 NA intron (NM_001286807, intron 7 of 9) intron (NM_001286807, intron 7 of 9) -18410 NR_047031 100874259 Hs.658038 NR_047031 ENSG00000251015 SLC25A30-AS1 - SLC25A30 antisense RNA 1 ncRNA 124.5-21 chr11 93566697 93567007 + 0.5 NA Intergenic Intergenic -23461 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 138-5 chr1 214540821 214541369 + 0.5 NA intron (NM_005401, intron 1 of 18) intron (NM_005401, intron 1 of 18) 10507 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 137.75-82 chr7 157943885 157944377 + 0.5 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 89546 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 117.5-88 chr7 72057674 72058112 + 0.5 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 279498 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 138.25-92 chr8 142979050 142979471 + 0.5 NA Intergenic AluSx|SINE|Alu -16568 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 140.25-32 chr2 21684583 21684984 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 25869 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 131.25-30 chr13 28492404 28492809 + 0.5 NA intron (NM_002019, intron 1 of 29) intron (NM_002019, intron 1 of 29) 2522 NM_001160031 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 151.25-34 chr20 32217837 32218386 + 0.5 NA TTS (NM_172236) TTS (NM_172236) 10231 NM_015352 23509 Hs.472409 NM_015352 ENSG00000101346 POFUT1 DDD2|FUT12|O-FUT|O-Fuc-T|O-FucT-1|OFUCT1 protein O-fucosyltransferase 1 protein-coding 142.75-64 chr4 164111822 164112368 + 0.5 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 85616 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 124.25-73 chr7 7314033 7314402 + 0.5 NA Intergenic Intergenic 59063 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 126-32 chr16 261654 262050 + 0.5 NA intron (NM_032039, intron 6 of 12) intron (NM_032039, intron 6 of 12) 14092 NM_001286486 8786 Hs.65756 NM_003834 ENSG00000076344 RGS11 RS11 regulator of G protein signaling 11 protein-coding 131.25-21 chr10 108629029 108629493 + 0.5 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -559968 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 143.5-5 chr1 191634891 191635253 + 0.5 NA Intergenic AluJb|SINE|Alu -406574 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 135.75-9 chr1 212675969 212676414 + 0.5 NA Intergenic L1M5|LINE|L1 23649 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 124.25-4 chr1 100656101 100656452 + 0.5 NA Intergenic Intergenic -9272 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 202.25-2 chr1 34970760 34971332 + 0.5 NA Intergenic MSTB1|LTR|ERVL-MaLR 7660 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 163.75-5 chr1 115814176 115814573 + 0.5 NA Intergenic Intergenic 26329 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 144.5-110 chr8 138935022 138935427 + 0.5 NA Intergenic LTR82A|LTR|ERVL -21183 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 119.25-66 chr3 27766009 27766402 + 0.5 NA Intergenic MIRb|SINE|MIR -31383 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 190.5-40 chr20 51977599 51978221 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -114997 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 116-42 chr2 150707507 150707808 + 0.5 NA Intergenic Intergenic 78760 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 126.75-88 chr7 11018632 11018917 + 0.5 NA intron (NR_033436, intron 4 of 16) L1MA1|LINE|L1 44902 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 121.25-92 chrX 26480308 26480716 + 0.5 NA Intergenic Intergenic -77825 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 197.5-33 chr2 133743865 133744352 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -175645 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 169-52 chr8 79819469 79819954 + 0.5 NA intron (NR_110954, intron 3 of 5) MIRc|SINE|MIR 51569 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 120.25-56 chr4 175328325 175328635 + 0.5 NA Intergenic Intergenic 410122 NM_001278126 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 115.75-91 chr7 106150980 106151233 + 0.5 NA Intergenic Intergenic -38530 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 114.25-113 chr9 68693098 68693454 + 0.5 NA Intergenic Intergenic -11964 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 191.75-32 chr5 9865421 9865908 + 0.5 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 11287 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 142.75-62 chr4 107742178 107742655 + 0.5 NA Intergenic LTR16C|LTR|ERVL -22182 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 119-44 chr2 221686866 221687212 + 0.5 NA Intergenic L1MC5a|LINE|L1 -112837 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 143.75-43 chr18 12332412 12332713 + 0.5 NA intron (NM_006796, intron 16 of 16) L1MC5|LINE|L1 24321 NM_001303526 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 182.25-18 chr18 3183826 3184355 + 0.5 NA intron (NM_019856, intron 5 of 36) AluSz6|SINE|Alu 35878 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 163.25-66 chr7 46557110 46557615 + 0.5 NA Intergenic Intergenic 139760 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 114.75-81 chr5 135528963 135529383 + 0.5 NA Intergenic Intergenic 6791 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 166.5-31 chr14 45343178 45343643 + 0.5 NA Intergenic Intergenic -90208 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 133.25-59 chr4 39678148 39678501 + 0.5 NA Intergenic L1MDa|LINE|L1 -19812 NM_001111112 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 127.75-76 chr5 53512894 53513205 + 0.5 NA Intergenic L1M1|LINE|L1 32420 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 149.25-37 chr2 207968412 207968893 + 0.5 NA intron (NM_001080475, intron 3 of 7) intron (NM_001080475, intron 3 of 7) 56875 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 122.5-28 chr14 23503030 23503358 + 0.5 NA Intergenic L1MC1|LINE|L1 -8566 NR_046051 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 124.75-18 chr11 93679773 93680129 + 0.5 NA intron (NM_033395, intron 7 of 29) intron (NM_033395, intron 7 of 29) 18269 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 262.5-32 chr5 35315948 35316676 + 0.5 NA Intergenic Intergenic -85825 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 113.5-102 chr5 140274705 140275036 + 0.5 NA intron (NM_002622, intron 3 of 3) AluSx1|SINE|Alu 28231 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 124-67 chr6 68952749 68953084 + 0.5 NA intron (NM_001704, intron 6 of 31) intron (NM_001704, intron 6 of 31) 317634 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 234.75-13 chr14 50082050 50082758 + 0.5 NA intron (NR_131171, intron 2 of 8) intron (NR_131171, intron 2 of 8) 22639 NR_131171 196913 Hs.406934 NM_001014830 LINC01599 C14orf183 long intergenic non-protein coding RNA 1599 ncRNA 119.75-54 chr22 38171688 38172008 + 0.5 NA intron (NM_001199562, intron 1 of 15) AluJb|SINE|Alu 9982 NM_001349868 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 124.75-83 chr7 88336486 88336977 + 0.5 NA Intergenic Intergenic -29837 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 128-61 chr7 92916521 92916927 + 0.5 NA intron (NR_110086, intron 4 of 4) intron (NR_110086, intron 4 of 4) -80097 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 134-33 chr2 56441753 56442244 + 0.5 NA Intergenic AluJb|SINE|Alu -256228 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 113.5-110 chr7 40474214 40474518 + 0.5 NA intron (NM_024728, intron 11 of 14) LTR16E1|LTR|ERVL 339390 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 113.5-49 chr17 53577150 53577506 + 0.5 NA Intergenic Intergenic -245599 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 128.75-67 chr4 39986508 39986874 + 0.5 NA Intergenic AluY|SINE|Alu -8735 NM_001100400 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 192-15 chr14 54994488 54994918 + 0.5 NA intron (NM_007086, intron 11 of 25) AluSx|SINE|Alu 32396 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 126-66 chr5 15217632 15217992 + 0.5 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 48748 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 139.5-31 chr14 64933646 64934052 + 0.5 NA 3' UTR (NM_145165, exon 4 of 4) 3' UTR (NM_145165, exon 4 of 4) 8896 NR_046321 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 119.75-42 chr2 43060492 43060767 + 0.5 NA Intergenic Intergenic -21086 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 115.75-37 chr18 1592534 1592918 + 0.5 NA Intergenic L1MB3|LINE|L1 -233097 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 137.5-50 chr19 30371481 30371794 + 0.5 NA promoter-TSS (NM_001352260) promoter-TSS (NM_001352260) -747 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 120.5-21 chr12 8531596 8531981 + 0.5 NA Intergenic Intergenic 9117 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 126.25-72 chr5 67730577 67730991 + 0.5 NA Intergenic L1MEc|LINE|L1 -62429 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 124.5-61 chr2 165745730 165746188 + 0.5 NA Intergenic Intergenic 48288 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 121-5 chr1 80716854 80717162 + 0.5 NA Intergenic Intergenic 75721 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 118.75-48 chr2 46587166 46587527 + 0.5 NA intron (NM_002643, intron 5 of 5) intron (NM_002643, intron 5 of 5) -7108 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 137.75-53 chr3 45296898 45297262 + 0.5 NA Intergenic Intergenic -70793 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 124-19 chr14 67180627 67181032 + 0.5 NA exon (NM_020806, exon 23 of 23) exon (NM_020806, exon 23 of 23) -8611 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 139-61 chr7 23543861 23544173 + 0.5 NA Intergenic L1MA6|LINE|L1 -11976 NM_001282757 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 128.5-45 chr2 149919453 149919864 + 0.5 NA Intergenic L1MA9|LINE|L1 -60467 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 130-73 chr6 84919934 84920278 + 0.5 NA Intergenic Intergenic -155508 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 145.25-5 chr1 109323978 109324408 + 0.5 NA intron (NM_001205228, intron 14 of 19) AluSq2|SINE|Alu -17182 NM_001010985 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 134.75-42 chr20 45596355 45596858 + 0.5 NA Intergenic Intergenic -17322 NM_181510 90199 Hs.116128 NM_130896 ENSG00000158901 WFDC8 C20orf170|HEL-S-292|WAP8|dJ461P17.1 WAP four-disulfide core domain 8 protein-coding 167-39 chr20 46782763 46783372 + 0.5 NA Intergenic Intergenic 73418 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 133.25-29 chr15 93935950 93936275 + 0.5 NA intron (NR_120320, intron 8 of 8) MER63C|DNA|hAT-Blackjack 35411 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 129-45 chr22 27591585 27592038 + 0.5 NA Intergenic Intergenic 209945 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 117-14 chr10 103483126 103483482 + 0.5 NA intron (NR_120675, intron 3 of 3) L1ME4b|LINE|L1 -4064 NM_001129742 119395 Hs.364624 NM_182494 ENSG00000183128 CALHM3 FAM26A|bA225H22.7 calcium homeostasis modulator 3 protein-coding 121.75-72 chr5 146222989 146223419 + 0.5 NA intron (NM_018989, intron 2 of 20) L1ME4b|LINE|L1 19599 NM_018989 54439 Hs.61441 NM_018989 ENSG00000091009 RBM27 ARRS1|Psc1|ZC3H18|ZC3H20 RNA binding motif protein 27 protein-coding 114-49 chr2 173942755 173943114 + 0.5 NA intron (NM_003111, intron 4 of 6) MER2|DNA|TcMar-Tigger 20946 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 156.75-9 chr10 54163214 54163776 + 0.5 NA intron (NM_001354411, intron 14 of 34) MSTA|LTR|ERVL-MaLR -322735 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 128.25-82 chr8 99001152 99001545 + 0.5 NA Intergenic Intergenic -11918 NM_181661 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 129-59 chr5 137728983 137729241 + 0.5 NA intron (NM_017415, intron 1 of 14) intron (NM_017415, intron 1 of 14) 6977 NM_017415 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 183-24 chr14 62373277 62373865 + 0.5 NA Intergenic Intergenic -233598 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 124.25-88 chrUn_KI270544v1 46 372 + 0.5 NA NA ALR/Alpha|Satellite|centr NA NA 161.25-3 chr1 98130630 98131265 + 0.5 NA Intergenic Intergenic -79764 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 114.25-70 chr22 34966464 34966839 + 0.5 NA intron (NR_138042, intron 1 of 4) MLT1H|LTR|ERVL-MaLR 31265 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 117.75-11 chr10 114203044 114203422 + 0.5 NA intron (NM_198795, intron 7 of 25) intron (NM_198795, intron 7 of 25) 23880 NM_001365891 56165 Hs.333132 NM_198795 ENSG00000095627 TDRD1 CT41.1 tudor domain containing 1 protein-coding 118.5-92 chr6 43617735 43618084 + 0.5 NA 3' UTR (NM_001291970, exon 11 of 11) 3' UTR (NM_001291970, exon 11 of 11) 9444 NM_001286216 54676 Hs.485449 NM_019096 ENSG00000172432 GTPBP2 JABELS GTP binding protein 2 protein-coding 155-34 chr3 9832823 9833206 + 0.5 NA intron (NM_001198793, intron 11 of 11) intron (NM_001198793, intron 11 of 11) 10994 NM_001351736 285367 Hs.33719 NM_173659 ENSG00000156990 RPUSD3 - RNA pseudouridine synthase D3 protein-coding 121.5-52 chr18 8858279 8858564 + 0.5 NA Intergenic L1ME2z|LINE|L1 141040 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 122.25-18 chr11 79106902 79107232 + 0.5 NA intron (NM_001098816, intron 4 of 33) MIR|SINE|MIR 295042 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 128.5-54 chr22 35505515 35505911 + 0.5 NA Intergenic Intergenic -34781 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 118.25-76 chr5 33328404 33328697 + 0.5 NA Intergenic Intergenic 98815 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 151.5-67 chr5 98389774 98390237 + 0.5 NA Intergenic Intergenic -228766 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 150-75 chr8 85361077 85361488 + 0.5 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 16831 NM_001128830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 131.5-13 chr10 75799830 75800351 + 0.5 NA intron (NM_032024, intron 1 of 5) L1M4a1|LINE|L1 17329 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 197.25-12 chr10 122072353 122072917 + 0.5 NA intron (NM_206861, intron 3 of 19) intron (NM_206861, intron 3 of 19) -40250 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 173.25-66 chr8 21412062 21412475 + 0.5 NA Intergenic Intergenic 114029 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 119.25-16 chr11 115604215 115604561 + 0.5 NA Intergenic L1ME2z|LINE|L1 -99973 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 113.75-93 chr6 70553132 70553409 + 0.5 NA intron (NM_020819, intron 19 of 20) intron (NM_020819, intron 19 of 20) -13660 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 135.25-17 chr10 124756805 124757113 + 0.5 NA TTS (NM_212554) TTS (NM_212554) -12581 NM_014661 9679 Hs.129195 NM_014661 ENSG00000189319 FAM53B KIAA0140|bA12J10.2|smp family with sequence similarity 53 member B protein-coding 119-37 chr2 66438610 66438966 + 0.5 NA TTS (NR_046625) TTS (NR_046625) 1542 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 136.25-2 chr1 62261394 62261906 + 0.5 NA intron (NM_181712, intron 7 of 9) L2c|LINE|L2 57784 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 130-25 chr16 72762238 72762714 + 0.5 NA Intergenic Intergenic -97506 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 161.5-41 chr18 8021371 8021880 + 0.5 NA intron (NM_002845, intron 7 of 30) L1PA8|LINE|L1 345409 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 140.75-28 chr18 7719967 7720467 + 0.5 NA intron (NM_002845, intron 1 of 30) L1M4|LINE|L1 152901 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 126.5-51 chr2 113691710 113692006 + 0.5 NA Intergenic L1PB3|LINE|L1 29510 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 113.5-56 chr2 38127020 38127354 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -3918 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 124-57 chr5 110136550 110136966 + 0.5 NA Intergenic L1PA10|LINE|L1 253576 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 153.75-71 chr6 131918440 131919014 + 0.5 NA Intergenic L1PA13|LINE|L1 32645 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 132.25 chr1 49316690 49316997 + 0.5 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 59432 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 140.5-88 chr5 152482765 152483234 + 0.5 NA Intergenic Intergenic -77720 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 151.75-58 chr4 26525872 26526390 + 0.5 NA Intergenic MIRb|SINE|MIR -35647 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 145.25-19 chr11 44227654 44228225 + 0.5 NA intron (NM_207122, intron 10 of 13) MIR|SINE|MIR 82200 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 135.25-6 chr10 6768832 6769159 + 0.5 NA Intergenic Intergenic 10185 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 129.75-30 chr16 22646915 22647247 + 0.5 NA Intergenic Intergenic 101383 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 158-6 chr10 56081298 56081781 + 0.5 NA Intergenic L1PB4|LINE|L1 279720 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 124.25-55 chr20 29276633 29276981 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 140154 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 116.25-5 chr1 158564784 158565095 + 0.5 NA Intergenic Intergenic -1335 NM_001160325 128366 Hs.723122 NM_001160325 ENSG00000186440 OR6P1 - olfactory receptor family 6 subfamily P member 1 protein-coding 119.25-23 chr14 46336730 46337095 + 0.5 NA intron (NR_102702, intron 3 of 3) MLT1F2|LTR|ERVL-MaLR -134447 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 157.75 chr1 8103821 8104212 + 0.5 NA Intergenic AluSx|SINE|Alu -77707 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 123.75-64 chr22 38670747 38671149 + 0.5 NA exon (NM_015373, exon 3 of 5) exon (NM_015373, exon 3 of 5) -11009 NM_020243 56993 Hs.595072 NM_020243 ENSG00000100216 TOMM22 1C9-2|MST065|MSTP065|TOM22 translocase of outer mitochondrial membrane 22 protein-coding 147.75-39 chr2 172253662 172254111 + 0.5 NA Intergenic MIR3|SINE|MIR 150880 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 121.25-69 chr6 158956190 158956580 + 0.5 NA Intergenic Intergenic 43802 NM_001346418 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 151-7 chr11 116159743 116160067 + 0.5 NA Intergenic LTR33|LTR|ERVL -399705 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 130-55 chr4 24749761 24750172 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -45607 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 189.5-57 chr6 107486075 107486692 + 0.5 NA Intergenic AluSz|SINE|Alu -3734 NM_018013 55084 Hs.445244 NM_018013 ENSG00000112320 SOBP JXC1|MRAMS sine oculis binding protein homolog protein-coding 126.25-48 chr2 166468081 166468558 + 0.5 NA intron (NR_045628, intron 6 of 25) Charlie8|DNA|hAT-Charlie 18652 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 147.25-54 chr5 88765226 88765646 + 0.5 NA intron (NM_001364333, intron 3 of 9) MER131|DNA?|DNA? 20075 NM_001364356 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 129-79 chr8 114887911 114888315 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity 779900 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 152.5-4 chr1 163573120 163573524 + 0.5 NA Intergenic L3|LINE|CR1 -150131 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 116-24 chr15 87578963 87579288 + 0.5 NA non-coding (NR_026869, exon 3 of 3) non-coding (NR_026869, exon 3 of 3) 2196 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 136.25-21 chr12 63487464 63487843 + 0.5 NA Intergenic Intergenic 180840 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 123.75-54 chr2 64239162 64239548 + 0.5 NA intron (NR_120420, intron 2 of 4) intron (NR_120420, intron 2 of 4) 10954 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 137.25-32 chr15 70127828 70128209 + 0.5 NA Intergenic Intergenic -30101 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 152.75-37 chr20 32348866 32349456 + 0.5 NA Intergenic AluSz|SINE|Alu -9183 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 180.75-53 chr6 44073601 44074080 + 0.5 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 812 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 145.75-17 chr15 79545580 79546046 + 0.5 NA Intergenic L2b|LINE|L2 113297 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 166.5-4 chr1 41458100 41458734 + 0.5 NA Intergenic Intergenic 26266 NR_126098 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 130.75-44 chr2 198593261 198593686 + 0.5 NA Intergenic L1MEd|LINE|L1 -218376 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 165-18 chr14 66762910 66763240 + 0.5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 255668 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 118-63 chr6 162856076 162856397 + 0.5 NA intron (NM_001080379, intron 2 of 4) AluJr|SINE|Alu 128266 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 136.75-85 chr6 62256503 62256990 + 0.5 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 29479 NR_146873 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 136-60 chr6 163955229 163955700 + 0.5 NA Intergenic Intergenic -283980 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 142.75-95 chr9 136832293 136832654 + 0.5 NA intron (NM_001173988, intron 7 of 14) intron (NM_001173988, intron 7 of 14) 1516 NR_036251 100422860 NR_036251 ENSG00000265806 MIR4292 - microRNA 4292 ncRNA 147.5-68 chr5 61314954 61315298 + 0.5 NA Intergenic Intergenic -17132 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 124.25-16 chr10 101909867 101910179 + 0.5 NA intron (NM_024541, intron 23 of 25) intron (NM_024541, intron 23 of 25) -66103 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 125-12 chr10 16278328 16278821 + 0.5 NA Intergenic Mam_R4|LINE|Dong-R4 -158369 NM_030664 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 115-40 chr2 99492687 99493065 + 0.5 NA Intergenic Intergenic -2859 NR_135650 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 140.75-70 chr9 13612031 13612377 + 0.5 NA Intergenic MER103C|DNA|hAT-Charlie -180875 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 133.5-23 chr13 51168896 51169395 + 0.5 NA intron (NR_102431, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 3077 NR_102432 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 113-45 chr2 55727070 55727375 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -33378 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 147-30 chr16 64041383 64041935 + 0.5 NA Intergenic L2|LINE|L2 1080404 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 134-4 chr1 78814087 78814530 + 0.5 NA Intergenic Intergenic 164477 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 142-19 chr13 113223748 113224133 + 0.5 NA intron (NM_001354942, intron 3 of 19) intron (NM_001354942, intron 3 of 19) 14327 NM_001008895 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 134.25-49 chr22 19542605 19543067 + 0.5 NA Intergenic L1M5|LINE|L1 -17499 NM_001363067 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 167.75-67 chr8 128090212 128090650 + 0.5 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 41279 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 124.5-34 chr15 25598883 25599296 + 0.5 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat -160033 NM_130839 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 162.25-41 chr6 46142235 46142837 + 0.5 NA intron (NM_014936, intron 3 of 3) intron (NM_014936, intron 3 of 3) 12547 NM_014936 22875 Hs.643497 NM_014936 ENSG00000001561 ENPP4 NPP4 ectonucleotide pyrophosphatase/phosphodiesterase 4 protein-coding 130-14 chr11 99768985 99769376 + 0.5 NA intron (NM_175566, intron 1 of 21) L1MC4|LINE|L1 213035 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 123.5-96 chr6 138821365 138821857 + 0.5 NA intron (NM_001077706, intron 4 of 21) intron (NM_001077706, intron 4 of 21) 25500 NM_001195037 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 123.75-6 chr1 91145222 91145507 + 0.5 NA Intergenic AluSc|SINE|Alu -123109 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 125-88 chr7 21127764 21128202 + 0.5 NA Intergenic Intergenic 292552 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 270.25-17 chr8 83887275 83887982 + 0.5 NA Intergenic Tigger2|DNA|TcMar-Tigger -295159 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 144-4 chr1 231711348 231711707 + 0.5 NA intron (NM_001164544, intron 3 of 8) AluY|SINE|Alu 84712 NM_001164555 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 120.75-50 chr2 75274740 75275116 + 0.5 NA Intergenic Intergenic -75408 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 164.25-14 chr11 113218813 113219194 + 0.5 NA intron (NM_000615, intron 8 of 17) intron (NM_000615, intron 8 of 17) 54898 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 136.25-51 chr3 19223532 19224018 + 0.5 NA intron (NM_144633, intron 1 of 15) intron (NM_144633, intron 1 of 15) 75265 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 128-68 chrX 57235633 57236031 + 0.5 NA Intergenic L1MA6|LINE|L1 -50845 NM_001353841 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 135.75-25 chr12 105255552 105255876 + 0.5 NA Intergenic AluJr|SINE|Alu -19484 NM_001251904 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 147.5-77 chr7 81605885 81606254 + 0.5 NA intron (NR_126025, intron 4 of 10) intron (NR_126025, intron 4 of 10) 20147 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 167.75-2 chr1 62284206 62284743 + 0.5 NA intron (NM_181712, intron 1 of 9) AluSx|SINE|Alu 34960 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 138.75-40 chr2 208511963 208512318 + 0.5 NA Intergenic Intergenic -30502 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 128-31 chr2 231446801 231447137 + 0.5 NA Intergenic L1ME2|LINE|L1 8967 NR_002921 654321 Hs.674388 NR_002921 ENSG00000206885 SNORA75 SNORA75A|U23 small nucleolar RNA, H/ACA box 75 snoRNA 118.5-98 chr6 144306208 144306571 + 0.5 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) 14652 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 128.25-66 chr5 175406738 175407242 + 0.5 NA Intergenic AluSz6|SINE|Alu 37192 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 166.25-57 chr8 123717975 123718342 + 0.5 NA intron (NM_004306, intron 1 of 10) MIR|SINE|MIR 19235 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 138.5-34 chr14 49762581 49763030 + 0.5 NA Intergenic AluSx|SINE|Alu -5348 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 133.75-44 chr2 114962474 114962828 + 0.5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -101922 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 114.25-106 chr8 90035315 90035620 + 0.5 NA intron (NM_001330575, intron 7 of 11) L1MEc|LINE|L1 33990 NM_001359 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 135.5-58 chr2 186303499 186303963 + 0.5 NA Intergenic L2|LINE|L2 -182529 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 137.5-91 chr4 184981638 184982097 + 0.5 NA Intergenic AluSz|SINE|Alu -36974 NM_001300781 391723 Hs.531242 NM_001029887 ENSG00000187821 HELT HCM1228|HESL|Mgn|bHLHb44 helt bHLH transcription factor protein-coding 140.25-53 chr3 72625299 72625734 + 0.5 NA Intergenic Intergenic 38733 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 163.25-67 chr7 65934299 65934752 + 0.5 NA intron (NM_001284342, intron 1 of 1) L1MA7|LINE|L1 47688 NM_001284290 2990 Hs.255230 NM_000181 ENSG00000169919 GUSB BG|MPS7 glucuronidase beta protein-coding 139-58 chr6 136174171 136174548 + 0.5 NA intron (NM_018945, intron 9 of 12) intron (NM_018945, intron 9 of 12) 75952 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 116-66 chr7 16999658 17000009 + 0.5 NA Intergenic (CTTTCC)n|Simple_repeat|Simple_repeat -117850 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 156.75-36 chr15 82831732 82832153 + 0.5 NA intron (NM_001080435, intron 9 of 9) intron (NM_001080435, intron 9 of 9) 22314 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 118-70 chr8 88966700 88967017 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR -639375 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 114.75-107 chr8 132372149 132372599 + 0.5 NA intron (NM_004519, intron 1 of 14) MIR|SINE|MIR 74888 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 122-23 chr14 69643231 69643634 + 0.5 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 31836 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 130.25-23 chr13 82359793 82360117 + 0.5 NA Intergenic L1MC3|LINE|L1 -1132972 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 129.5-16 chr11 16441655 16441990 + 0.5 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -32966 NM_001145811 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 116-11 chr10 107395297 107395642 + 0.5 NA Intergenic Intergenic -230763 NM_001206571 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 128.75-47 chr2 220478451 220478770 + 0.5 NA Intergenic Intergenic -572045 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 121.75-65 chr4 103259979 103260397 + 0.5 NA Intergenic AluSc8|SINE|Alu -61845 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 142.75-38 chr2 34294557 34294901 + 0.5 NA intron (NR_126403, intron 5 of 5) intron (NR_126403, intron 5 of 5) 227503 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 133.5-102 chr6 127424470 127424798 + 0.5 NA Intergenic L1M4|LINE|L1 34755 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 138.5-7 chr1 114142236 114142599 + 0.5 NA intron (NM_001366225, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 10023 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 127.5-82 chr3 83935484 83935945 + 0.5 NA Intergenic MLT-int|LTR|ERVL-MaLR 933861 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 130.25-67 chr4 87359546 87359909 + 0.5 NA intron (NM_016245, intron 4 of 6) MIR|SINE|MIR 31461 NM_016245 51170 Hs.594923 NM_016245 ENSG00000198189 HSD17B11 17-BETA-HSD11|17-BETA-HSDXI|17BHSD11|DHRS8|PAN1B|RETSDR2|SDR16C2 hydroxysteroid 17-beta dehydrogenase 11 protein-coding 141.25-56 chr4 71742158 71742687 + 0.5 NA intron (NM_000583, intron 12 of 12) intron (NM_000583, intron 12 of 12) 41657 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 157.5-64 chr22 48519438 48520062 + 0.5 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) 27637 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 126.5-76 chr3 196202902 196203194 + 0.5 NA intron (NR_135617, intron 5 of 8) AluSx|SINE|Alu 8352 NR_135618 131540 Hs.111591 NM_001039617 ENSG00000163958 ZDHHC19 DHHC19 zinc finger DHHC-type containing 19 protein-coding 134.5-89 chr7 39144631 39145021 + 0.5 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -131259 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 137.5-120 chr8 114667045 114667415 + 0.5 NA Intergenic Intergenic 1000783 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 144.75-46 chr2 188677983 188678385 + 0.5 NA Intergenic Intergenic 111939 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 146.75-70 chr9 130577710 130578149 + 0.5 NA non-coding (NR_027440, exon 1 of 1) non-coding (NR_027440, exon 1 of 1) 1565 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 117.75-3 chr1 209013731 209014080 + 0.5 NA Intergenic Intergenic 41451 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 119-19 chr13 67301413 67301759 + 0.5 NA Intergenic Intergenic -70801 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 131.5-51 chr20 22511012 22511375 + 0.5 NA Intergenic AluY|SINE|Alu 67449 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 119.5-66 chr2 241523828 241524128 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -14406 NM_001282305 10494 Hs.516807 NM_006374 ENSG00000115694 STK25 SOK1|YSK1 serine/threonine kinase 25 protein-coding 113.25-24 chr11 108205565 108205948 + 0.5 NA intron (NM_001321307, intron 1 of 17) L1MB7|LINE|L1 16882 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 120.75-90 chr6 159560937 159561390 + 0.5 NA Intergenic LTR1D1|LTR|ERV1 132078 NM_001322815 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 166.5-72 chr4 71403318 71403768 + 0.5 NA intron (NM_003759, intron 4 of 22) L2a|LINE|L2 64490 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 198.75-53 chr9 85119152 85119804 + 0.5 NA Intergenic L1MB5|LINE|L1 413577 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 129-48 chr4 54129893 54130213 + 0.5 NA Intergenic L1MA2|LINE|L1 29890 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 125.25-85 chr8 121340980 121341346 + 0.5 NA Intergenic L1MA8|LINE|L1 -298183 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 120.75-18 chr11 120785952 120786412 + 0.5 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 32933 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 124.75-39 chr18 14770067 14770349 + 0.5 NA intron (NR_160272, intron 8 of 29) intron (NR_160272, intron 8 of 29) 22036 NR_160272 374860 Hs.567889 NM_001145029 ENSG00000180777 ANKRD30B NY-BR-1.1 ankyrin repeat domain 30B protein-coding 118.5-22 chr10 101623184 101623541 + 0.5 NA intron (NR_136613, intron 5 of 7) AluJo|SINE|Alu -21865 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 126.5-82 chr4 100202671 100202924 + 0.5 NA intron (NR_125924, intron 4 of 4) L1ME1|LINE|L1 -12329 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 116-33 chr18 3784168 3784616 + 0.5 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 60966 NM_001003809 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 126.25-53 chr20 47698704 47699124 + 0.5 NA intron (NM_198596, intron 4 of 20) AluSp|SINE|Alu 87150 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 115.5-52 chr2 210461740 210462042 + 0.5 NA intron (NR_110604, intron 4 of 5) intron (NR_110604, intron 4 of 5) 14814 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 113.25-18 chr11 43246864 43247186 + 0.5 NA Intergenic LTR78|LTR|ERV1 22344 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 124.75-16 chr10 61709886 61710181 + 0.5 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 47072 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 138.5-27 chr13 66842832 66843176 + 0.5 NA intron (NR_046527, intron 1 of 5) intron (NR_046527, intron 1 of 5) 17835 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 127.75-94 chr8 31036976 31037475 + 0.5 NA intron (NM_000553, intron 1 of 34) MER1A|DNA|hAT-Charlie -3869 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 152.25-15 chr11 117072098 117072468 + 0.5 NA intron (NM_001366687, intron 1 of 4) AluSq|SINE|Alu 26145 NM_001366687 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 113.25-6 chr1 109779573 109779891 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -15809 NM_001319952 79574 Hs.485352 NM_024526 ENSG00000198758 EPS8L3 EPS8R3 EPS8 like 3 protein-coding 135.25-74 chr5 38206446 38206881 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -51896 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 116.75-73 chr6 166855476 166855789 + 0.5 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 6893 NM_001006932 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 144.25-19 chr14 54341892 54342293 + 0.5 NA Intergenic L1ME4b|LINE|L1 -54776 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 115.75-5 chr1 117096454 117096807 + 0.5 NA intron (NM_003594, intron 20 of 22) AluSq2|SINE|Alu 1987 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 116.25-91 chr8 89003857 89004166 + 0.5 NA Intergenic HAL1|LINE|L1 -676528 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 125-33 chr16 47707905 47708186 + 0.5 NA Intergenic FLAM_A|SINE|Alu -150536 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 149.25-21 chr12 129305745 129306081 + 0.5 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 97312 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 152-21 chr12 38731604 38731988 + 0.5 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 173795 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 141-63 chr5 106476927 106477333 + 0.5 NA Intergenic Intergenic 533884 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 127-55 chr21 29795432 29795740 + 0.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 47411 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 113.5-99 chr5 114342826 114343114 + 0.5 NA Intergenic L1PA11|LINE|L1 -19100 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 129.5-23 chr12 61027522 61027927 + 0.5 NA Intergenic L1MDa|LINE|L1 1165115 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 137.75-12 chr11 22092276 22092727 + 0.5 NA Intergenic MER101-int|LTR|ERV1 -100584 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 120.75-35 chr16 79761348 79761643 + 0.5 NA intron (NR_104663, intron 2 of 5) intron (NR_104663, intron 2 of 5) -8976 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 138.75-42 chr21 29570203 29570552 + 0.5 NA intron (NM_000830, intron 14 of 16) AluSg|SINE|Alu -25663 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 120.25-75 chr8 123340819 123341098 + 0.5 NA intron (NM_014109, intron 19 of 27) AluSx3|SINE|Alu -7076 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 126-38 chr18 7228364 7228679 + 0.5 NA Intergenic Intergenic -2583 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 172.25-56 chr4 72375535 72375965 + 0.5 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 193471 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 181.5-12 chr12 418354 418829 + 0.5 NA exon (NM_001130147, exon 4 of 12) exon (NM_001130147, exon 4 of 12) 16947 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 131-36 chr3 35707922 35708339 + 0.5 NA intron (NM_001267617, intron 10 of 18) intron (NM_001267617, intron 10 of 18) 27190 NM_198399 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 139.5-61 chr3 76240527 76240975 + 0.5 NA Intergenic Intergenic -455202 NM_001290209 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 134-14 chr10 42585642 42586039 + 0.5 NA intron (NR_130950, intron 4 of 4) intron (NR_130950, intron 4 of 4) -32970 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 118-65 chr7 87782080 87782406 + 0.5 NA intron (NM_001134406, intron 8 of 9) L1PA16|LINE|L1 -68920 NM_001348944 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 123.75-23 chr11 46819007 46819329 + 0.5 NA intron (NM_001008938, intron 2 of 43) L2c|LINE|L2 27112 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 166.5-97 chr8 67834647 67835078 + 0.5 NA Intergenic MLT1C|LTR|ERVL-MaLR -88502 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 292.5-7 chr4 49101878 49102962 + 0.5 NA Intergenic (CATTC)n|Satellite|Satellite 115778 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 145.5-12 chr10 33403790 33404174 + 0.5 NA Intergenic L3b|LINE|CR1 -69077 NM_001244972 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 140.25-42 chr2 238236834 238237213 + 0.5 NA Intergenic Intergenic 3015 NM_001282434 55502 Hs.42949 NM_018645 ENSG00000144485 HES6 C-HAIRY1|HES-6|bHLHb41|bHLHc23 hes family bHLH transcription factor 6 protein-coding 120.25-6 chr1 213537673 213538054 + 0.5 NA Intergenic Intergenic -386886 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 124.5-83 chr5 87542849 87543229 + 0.5 NA Intergenic Intergenic -119003 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 118.25-78 chr5 63464959 63465279 + 0.5 NA Intergenic L1PA14|LINE|L1 497173 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 165.25-34 chr3 7414780 7415282 + 0.5 NA exon (NM_181874, exon 5 of 11) exon (NM_181874, exon 5 of 11) 120253 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 127-21 chr12 23860478 23860827 + 0.5 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 89018 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 160.25-57 chr8 118611225 118611617 + 0.5 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -9580 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 136.75-71 chr4 19342965 19343333 + 0.5 NA Intergenic Intergenic -908756 NM_004787 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 122.75-2 chr1 48156516 48156891 + 0.5 NA intron (NR_026749, intron 7 of 9) L1M4|LINE|L1 25725 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 120-28 chr14 55611276 55611668 + 0.5 NA intron (NR_073129, intron 2 of 45) intron (NR_073129, intron 2 of 45) 31265 NM_001079522 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 135-6 chr1 156564896 156565278 + 0.5 NA intron (NM_178229, intron 4 of 37) intron (NM_178229, intron 4 of 37) 7478 NM_178229 128239 Hs.591495 NM_178229 ENSG00000183856 IQGAP3 - IQ motif containing GTPase activating protein 3 protein-coding 127.5-2 chr1 25086023 25086382 + 0.5 NA Intergenic Intergenic 62699 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 114.75-48 chr2 53064101 53064555 + 0.5 NA Intergenic Intergenic -361713 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 153.25-5 chr1 159753029 159753434 + 0.5 NA Intergenic Intergenic -27731 NM_001319659 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 132.75-74 chr4 133597743 133598110 + 0.5 NA Intergenic Intergenic 448632 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 116.25-45 chr2 29199488 29199802 + 0.5 NA intron (NM_004304, intron 26 of 28) intron (NM_004304, intron 26 of 28) 24255 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 166.25-40 chr3 15034059 15034693 + 0.5 NA intron (NM_003298, intron 11 of 14) intron (NM_003298, intron 11 of 14) 30939 NM_022497 64432 Hs.657764 NM_022497 ENSG00000131368 MRPS25 MRP-S25|RPMS25 mitochondrial ribosomal protein S25 protein-coding 114-82 chr7 1807172 1807469 + 0.5 NA Intergenic AluJb|SINE|Alu 36933 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 119-14 chr12 39204036 39204403 + 0.5 NA Intergenic L1PA15|LINE|L1 238901 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 181.5-33 chr19 51518374 51518884 + 0.5 NA 3' UTR (NM_001245, exon 8 of 8) 3' UTR (NM_001245, exon 8 of 8) 13041 NM_001177547 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 123.75-44 chr16 48040804 48041192 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 75309 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 142.5-105 chrX 44843806 44844199 + 0.5 NA promoter-TSS (NM_022076) promoter-TSS (NM_022076) -19 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 127-5 chr1 94828047 94828442 + 0.5 NA intron (NM_001258340, intron 4 of 14) intron (NM_001258340, intron 4 of 14) 3751 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 163.75-28 chr19 16337023 16337539 + 0.5 NA Intergenic AluSq2|SINE|Alu 12455 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 142.75-90 chr8 130113097 130113496 + 0.5 NA intron (NM_001362925, intron 24 of 29) L2c|LINE|L2 -28528 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 114.25-49 chr18 76309688 76310085 + 0.5 NA Intergenic Intergenic 100376 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 126-29 chr15 53190179 53190525 + 0.5 NA Intergenic Intergenic 73987 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 150.75-43 chr22 34447674 34448033 + 0.5 NA Intergenic MLT1E3|LTR|ERVL-MaLR -524965 NM_001362949 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 140.5-90 chr5 165138106 165138557 + 0.5 NA Intergenic Intergenic 668052 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 170.25-49 chr4 49096778 49097373 + 0.5 NA Intergenic (CATTC)n|Satellite|Satellite 110433 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 120.5-32 chr14 28120860 28121254 + 0.5 NA Intergenic Intergenic -447836 NR_148991 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 126.5-107 chr7 21516500 21516895 + 0.5 NA Intergenic MIRc|SINE|MIR -26342 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 134.25-78 chr6 118719375 118719760 + 0.5 NA Intergenic Intergenic -9492 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 126.25-46 chr2 152361436 152361884 + 0.5 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 26486 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 132.5-117 chr9 29768556 29768935 + 0.5 NA Intergenic MIRb|SINE|MIR -555144 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 115.5-89 chr7 27323651 27324020 + 0.5 NA Intergenic L3b|LINE|CR1 -76606 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 123.25-76 chr7 108623666 108624029 + 0.5 NA Intergenic Intergenic 53973 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 117.25-62 chr4 11346771 11347179 + 0.5 NA Intergenic Intergenic -21852 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 145.5-23 chr12 56218087 56218648 + 0.5 NA intron (NM_194359, intron 1 of 6) AluJb|SINE|Alu 3334 NM_001242826 10193 Hs.524502 NM_005785 ENSG00000181852 RNF41 FLRF|NRDP1|SBBI03 ring finger protein 41 protein-coding 124.25-41 chr17 75510092 75510341 + 0.5 NA promoter-TSS (NM_001142643) promoter-TSS (NM_001142643) -326 NM_001142643 57513 Hs.274408 NM_020753 ENSG00000177303 CASKIN2 ANKS5B CASK interacting protein 2 protein-coding 116.5-59 chr2 104230405 104230723 + 0.5 NA Intergenic Intergenic 177768 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 143.5-43 chr18 75820722 75821142 + 0.5 NA Intergenic L2|LINE|L2 -108529 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 124-52 chr5 3862641 3863070 + 0.5 NA Intergenic Intergenic 267023 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 157.75-3 chr1 10298334 10298741 + 0.5 NA promoter-TSS (NR_004394) promoter-TSS (NR_004394) -429 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 116-22 chr15 25391426 25391794 + 0.5 NA non-coding (NR_146177, exon 147 of 148) non-coding (NR_146177, exon 147 of 148) 46619 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 143.75-31 chr14 24426586 24427081 + 0.5 NA 3' UTR (NM_001039771, exon 3 of 3) 3' UTR (NM_001039771, exon 3 of 3) -2453 NM_001290256 23351 Hs.713590 NM_015299 ENSG00000100441 KHNYN KIAA0323 KH and NYN domain containing protein-coding 112.75-14 chr10 89204076 89204451 + 0.5 NA Intergenic MIRc|SINE|MIR 3054 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 118.25-49 chr2 178287026 178287280 + 0.5 NA intron (NM_001201480, intron 2 of 25) (A)n|Simple_repeat|Simple_repeat -33089 NM_145739 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 118.25-17 chr11 81822585 81822876 + 0.5 NA Intergenic L2a|LINE|L2 68106 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 171.5 chr1 38065134 38065508 + 0.5 NA Intergenic Intergenic -18528 NM_002699 5453 Hs.1837 NM_002699 ENSG00000185668 POU3F1 OCT6|OTF6|SCIP POU class 3 homeobox 1 protein-coding 120.25-67 chr7 86320544 86320976 + 0.5 NA Intergenic Intergenic -323149 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 151-52 chr5 28862949 28863342 + 0.5 NA Intergenic Intergenic -63725 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 114.5-64 chr21 20536578 20536974 + 0.5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 266332 NR_109786 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 132-60 chr5 109627882 109628291 + 0.5 NA Intergenic Intergenic -61280 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 134-37 chr2 120446162 120446670 + 0.5 NA Intergenic LTR16A|LTR|ERVL 19933 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 142.75-91 chr9 29261486 29261796 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -48040 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 116.75-42 chr2 98080434 98080805 + 0.5 NA Intergenic MSTB2|LTR|ERVL-MaLR -6548 NR_144296 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 117-75 chr6 119359129 119359449 + 0.5 NA Intergenic Intergenic -9528 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 162.75-43 chr3 80467611 80468071 + 0.5 NA Intergenic L1P4|LINE|L1 -297056 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 138-41 chr2 154466748 154467226 + 0.5 NA Intergenic L2|LINE|L2 -9549 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 126.5-26 chr12 30108336 30108753 + 0.5 NA Intergenic AluSp|SINE|Alu -323785 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 120.5-16 chr11 26747245 26747697 + 0.5 NA Intergenic MIRb|SINE|MIR -25411 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 140.25-74 chr5 171350272 171350765 + 0.5 NA Intergenic L1PA16|LINE|L1 -15600 NR_145720 109616973 NR_145720 ENSG00000206909 SNORA70J - small nucleolar RNA, H/ACA box 70J snoRNA 145.5-97 chr9 27661633 27662141 + 0.5 NA Intergenic Intergenic -88021 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 166-20 chr12 122976072 122976448 + 0.5 NA 5' UTR (NM_024623, exon 3 of 8) 5' UTR (NM_024623, exon 3 of 8) 1057 NM_001304833 79676 Hs.524817 NM_024623 ENSG00000111325 OGFOD2 - 2-oxoglutarate and iron dependent oxygenase domain containing 2 protein-coding 115-7 chr1 175467972 175468383 + 0.5 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -275190 NM_001162893 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 142.5-83 chr6 35284174 35284699 + 0.5 NA intron (NM_001292032, intron 2 of 12) AluSx1|SINE|Alu -13382 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 116.25-100 chr9 96093985 96094285 + 0.5 NA intron (NR_033838, intron 2 of 8) intron (NR_033838, intron 2 of 8) 22276 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 142.25-5 chr1 188593680 188594143 + 0.5 NA Intergenic Intergenic 1150283 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 121.25-90 chr9 37150141 37150541 + 0.5 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 29743 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 122.75-36 chr18 21890750 21891231 + 0.5 NA Intergenic Arthur1C|DNA|hAT-Tip100 -59584 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 118.75-44 chr18 44902000 44902348 + 0.5 NA intron (NM_015559, intron 3 of 5) MER3|DNA|hAT-Charlie 67992 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 146.75-61 chr7 83867844 83868417 + 0.5 NA Intergenic Intergenic -218991 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 135.75-24 chr12 64414310 64414683 + 0.5 NA intron (NM_007235, intron 2 of 24) intron (NM_007235, intron 2 of 24) 10104 NM_007235 11260 Hs.85951 NM_007235 ENSG00000184575 XPOT XPO3 exportin for tRNA protein-coding 182.25-26 chr2 187329001 187329700 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 118902 NM_001369434 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 127.25-48 chr2 75626785 75627072 + 0.5 NA Intergenic L2|LINE|L2 -19855 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 117.75-62 chr5 14880950 14881321 + 0.5 NA Intergenic Intergenic -9357 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 137.75-80 chr7 101705877 101706248 + 0.5 NA Intergenic AluJb|SINE|Alu -76766 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 158-19 chr15 68891235 68891703 + 0.5 NA Intergenic L1MCa|LINE|L1 -39031 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 172.5-18 chr15 98637325 98637747 + 0.5 NA Intergenic AluJr|SINE|Alu -11003 NM_000875 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 133-14 chr12 25781703 25782094 + 0.5 NA Intergenic L2b|LINE|L2 92181 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 152.5-66 chr3 29682506 29682907 + 0.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 251450 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 132.25-8 chr10 49068319 49068698 + 0.5 NA intron (NM_001031746, intron 4 of 7) intron (NM_001031746, intron 4 of 7) 47014 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 122.25-74 chr5 17719587 17720066 + 0.5 NA Intergenic Intergenic -64188 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 127.5-126 chr9 73250421 73250774 + 0.5 NA Intergenic L1ME3|LINE|L1 98732 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 156.5-38 chr2 226278803 226279310 + 0.5 NA Intergenic Intergenic 136262 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 137.75-85 chr8 75729377 75729773 + 0.5 NA Intergenic MER102b|DNA|hAT-Charlie 189607 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 140-25 chr17 21976426 21976939 + 0.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -226313 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 114.75-69 chr4 34408760 34409103 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -139184 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 151.5-71 chr5 170705830 170706166 + 0.5 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -24528 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 165.75-60 chr6 36053548 36054103 + 0.5 NA intron (NM_139012, intron 2 of 11) intron (NM_139012, intron 2 of 11) 26017 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 144-37 chr20 51045945 51046375 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -23053 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 113.25-63 chr2 11835172 11835467 + 0.5 NA Intergenic Intergenic 1667 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 115-38 chr2 59174453 59174781 + 0.5 NA Intergenic HERVK13-int|LTR|ERVK -43091 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 125-58 chr3 25863710 25864144 + 0.5 NA intron (NR_034055, intron 4 of 7) intron (NR_034055, intron 4 of 7) 9768 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 157.75-67 chr6 120392840 120393346 + 0.5 NA Intergenic L1MEd|LINE|L1 377914 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 187-18 chr19 34430306 34430796 + 0.5 NA intron (NM_005499, intron 1 of 16) intron (NM_005499, intron 1 of 16) 2170 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 113.5-118 chr8 107981198 107981642 + 0.5 NA intron (NM_001282863, intron 2 of 4) AluSz6|SINE|Alu 100519 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 126-5 chr10 16755223 16755614 + 0.5 NA intron (NM_152724, intron 3 of 7) AluJb|SINE|Alu 62006 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 122.5-98 chr8 141909888 141910354 + 0.5 NA Intergenic Intergenic -123808 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 126.25-33 chr16 69078123 69078510 + 0.5 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -27337 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 136.5-106 chr8 111147047 111147428 + 0.5 NA intron (NR_125418, intron 1 of 3) L1PA16|LINE|L1 88966 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 115-69 chr6 165023539 165023931 + 0.5 NA Intergenic L1MC1|LINE|L1 -201672 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 158.5-20 chr11 6443211 6443569 + 0.5 NA Intergenic Intergenic -2403 NM_000613 3263 Hs.426485 NM_000613 ENSG00000110169 HPX HX hemopexin protein-coding 138.5-99 chr7 106778004 106778478 + 0.5 NA Intergenic L2|LINE|L2 -87041 NM_001282427 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 148.5-60 chr3 78087941 78088419 + 0.5 NA Intergenic Intergenic -39217 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 154-58 chr6 48390700 48391304 + 0.5 NA Intergenic L1PB3|LINE|L1 -322313 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 169.25-45 chr4 184313553 184313951 + 0.5 NA Intergenic Intergenic 40225 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 125-53 chr2 100785039 100785417 + 0.5 NA Intergenic Intergenic -34911 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 131.75-63 chr5 60136330 60136714 + 0.5 NA intron (NM_001349243, intron 2 of 16) AluSx1|SINE|Alu 236141 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 207-35 chr22 19687456 19688170 + 0.5 NA Intergenic Intergenic -26690 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 128.25-83 chr8 109802123 109802494 + 0.5 NA Intergenic Intergenic -110517 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 117.5-22 chr14 64816748 64817161 + 0.5 NA intron (NM_001024858, intron 1 of 34) intron (NM_001024858, intron 1 of 34) 6426 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 148.25-7 chr10 11460288 11460857 + 0.5 NA TTS (NM_001080491) TTS (NM_001080491) 71708 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 147-50 chr22 28887615 28888143 + 0.5 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) 4307 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 139-43 chr21 36522575 36522978 + 0.5 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 20008 NM_001146078 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 142.5-82 chr5 158815633 158816109 + 0.5 NA intron (NM_001324107, intron 8 of 15) intron (NM_001324107, intron 8 of 15) 282085 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 121.25-11 chr11 46642953 46643413 + 0.5 NA intron (NM_001346351, intron 3 of 17) MER101B|LTR|ERV1 25907 NM_001205119 9776 Hs.127403 NM_014741 ENSG00000175224 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 125.25-42 chr2 116517114 116517553 + 0.5 NA Intergenic Intergenic 1173518 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 148.75-63 chr6 141709453 141709923 + 0.5 NA Intergenic L1PA16|LINE|L1 379111 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 130.75-26 chr15 98198987 98199375 + 0.5 NA Intergenic Intergenic -110428 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 124.5-11 chr1 208182448 208182838 + 0.5 NA intron (NM_025179, intron 3 of 31) MIR3|SINE|MIR 61741 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 118.5-87 chr5 90776167 90776534 + 0.5 NA intron (NR_003149, intron 60 of 89) MIR|SINE|MIR 217553 NR_003149 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 124.25-21 chr11 111680897 111681265 + 0.5 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 78632 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 114.25-114 chr9 84520388 84520787 + 0.5 NA Intergenic Intergenic -147871 NM_001291937 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 159.25-53 chr4 76184067 76184617 + 0.5 NA intron (NM_005506, intron 2 of 11) intron (NM_005506, intron 2 of 11) 29482 NM_001204255 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 114.5-24 chr16 2383013 2383409 + 0.5 NA intron (NR_003574, intron 7 of 16) L1MB7|LINE|L1 42289 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 121.25-84 chr8 126053901 126054375 + 0.5 NA Intergenic L1MEc|LINE|L1 -102941 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 115.25-59 chr21 24030152 24030516 + 0.5 NA Intergenic Intergenic 291043 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 180.25-46 chr4 61109706 61110239 + 0.5 NA Intergenic Intergenic -33684 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 149-35 chr22 42450048 42450346 + 0.5 NA Intergenic AluJo|SINE|Alu -12211 NM_001371362 154.25 chr1 41683697 41684291 + 0.5 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -199311 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 117.5-46 chr2 30540173 30540581 + 0.5 NA intron (NM_182551, intron 4 of 6) L1ME4b|LINE|L1 93131 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 112.75-5 chr1 187887694 187887977 + 0.5 NA Intergenic Intergenic 444207 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 113-32 chr16 63804832 63805175 + 0.5 NA Intergenic Intergenic 1317060 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 147.5-37 chr17 81234190 81234592 + 0.5 NA intron (NM_144679, intron 4 of 11) intron (NM_144679, intron 4 of 11) 4664 NM_144679 146705 Hs.631761 NM_144679 ENSG00000167302 TEPSIN C17orf56|ENTHD2 TEPSIN adaptor related protein complex 4 accessory protein protein-coding 116-17 chr12 63357776 63358139 + 0.5 NA Intergenic MIRb|SINE|MIR -205147 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 124.25-43 chr18 61132645 61133031 + 0.5 NA Intergenic Intergenic -200592 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 129-66 chr6 54803880 54804351 + 0.5 NA Intergenic Intergenic -42656 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 146.25-77 chr9 89197179 89197498 + 0.5 NA Intergenic L1M3|LINE|L1 -18520 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 129.25-33 chr17 14473833 14474255 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 170304 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 126.5 chr1 3041284 3041633 + 0.5 NA Intergenic L1M5|LINE|L1 19991 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 152.75-61 chr8 74778988 74779491 + 0.5 NA Intergenic Tigger17c|DNA|TcMar-Tigger -45295 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 125-52 chr2 88152299 88152715 + 0.5 NA Intergenic L1MA5|LINE|L1 -17788 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 131.25-31 chr13 76585892 76586291 + 0.5 NA Intergenic Intergenic 300314 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 167.75-20 chr14 62110074 62110730 + 0.5 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -6955 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 115.25-18 chr11 33804201 33804498 + 0.5 NA Intergenic Intergenic 29650 NR_120550 101928440 Hs.202343 NR_120550 ENSG00000254508 FBXO3-DT FBXO3-AS1 FBXO3 divergent transcript ncRNA 132.25-62 chr3 159590502 159590998 + 0.5 NA intron (NM_001197108, intron 1 of 6) L1M6|LINE|L1 177862 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 123.5-8 chr10 20721891 20722243 + 0.5 NA Intergenic LTR80A|LTR|ERVL 170097 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 136-29 chr2 6642042 6642539 + 0.5 NA Intergenic Intergenic -7584 NR_110498 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 131.25-91 chr9 79699729 79700102 + 0.5 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) -124615 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 122.5-45 chr19 30341053 30341419 + 0.5 NA Intergenic Intergenic -31148 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 179.75-55 chr7 130811036 130811396 + 0.5 NA Intergenic HAL1ME|LINE|L1 65594 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 159.5-16 chr12 2127550 2127962 + 0.5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 74471 NM_001167624 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 187.25-40 chr3 88709989 88710482 + 0.5 NA Intergenic Intergenic 371779 NM_001368167 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 113.25-71 chr2 56656682 56657055 + 0.5 NA Intergenic Intergenic -471098 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 204.25-42 chr5 72060313 72060836 + 0.5 NA Intergenic Intergenic -46901 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 133-25 chr16 7992586 7993001 + 0.5 NA Intergenic Intergenic 597045 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 137.75-30 chr15 98311792 98312305 + 0.5 NA Intergenic Intergenic 19510 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 147-25 chr14 67408926 67409506 + 0.5 NA intron (NM_016445, intron 1 of 8) AluJb|SINE|Alu 2949 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 141.5-37 chr16 54577287 54577688 + 0.5 NA Intergenic Intergenic -206788 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 151.75-22 chr12 103124858 103125245 + 0.5 NA Intergenic MamTip2|DNA|hAT-Tip100 -26791 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 168.25-69 chr9 37482607 37483080 + 0.5 NA Intergenic AluSq2|SINE|Alu -3092 NM_001282766 64425 Hs.591087 NM_022490 ENSG00000137054 POLR1E PAF53|PRAF1 RNA polymerase I subunit E protein-coding 124.25-61 chr4 33550960 33551376 + 0.5 NA Intergenic MER73|LTR|ERVL 488725 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 119.25-27 chr14 64292247 64292618 + 0.5 NA intron (NR_073496, intron 1 of 7) L1ME1|LINE|L1 1978 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 147-70 chr6 52451074 52451382 + 0.5 NA intron (NR_033327, intron 3 of 9) L1PREC2|LINE|L1 30220 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 113.5-34 chr14 49973166 49973604 + 0.5 NA Intergenic AluSx1|SINE|Alu 6986 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 121.75-45 chr2 186093243 186093726 + 0.5 NA Intergenic Intergenic -7167 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 114.75-3 chr1 195482969 195483254 + 0.5 NA Intergenic MER61-int|LTR|ERV1 605604 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 127.25-49 chr2 76267756 76268211 + 0.5 NA Intergenic Intergenic -557068 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 116-41 chr2 133178905 133179303 + 0.5 NA intron (NM_207481, intron 5 of 17) AluJr|SINE|Alu -87091 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 134.5 chr1 44298906 44299315 + 0.5 NA intron (NM_001301698, intron 5 of 7) L1ME3|LINE|L1 -46551 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 145-71 chrX 100853040 100853331 + 0.5 NA intron (NM_001271815, intron 6 of 11) intron (NM_001271815, intron 6 of 11) 21160 NM_001271815 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 119.25-67 chr3 41194290 41194700 + 0.5 NA Intergenic Intergenic -5010 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 114.75-23 chr12 74645527 74645844 + 0.5 NA Intergenic Intergenic 107850 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 123.5-65 chr22 49496664 49497092 + 0.5 NA intron (NR_110523, intron 1 of 4) AluSq|SINE|Alu 46588 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 149.75-57 chr6 36263226 36263663 + 0.5 NA intron (NM_173676, intron 1 of 7) L1M5|LINE|L1 -7016 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 114-92 chr8 135828498 135828791 + 0.5 NA Intergenic Intergenic 371188 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 121.5-6 chr1 88969005 88969329 + 0.5 NA intron (NM_001008661, intron 3 of 13) L2b|LINE|L2 23462 NM_001162536 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RBMX like 1 protein-coding 147.75-34 chr18 66845326 66845833 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -236005 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 160.5-42 chr20 41271560 41271935 + 0.5 NA intron (NM_015035, intron 1 of 3) intron (NM_015035, intron 1 of 3) 28373 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 216.75-13 chr12 126203323 126204018 + 0.5 NA Intergenic Intergenic 107678 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 152.5-59 chr20 44141157 44141600 + 0.5 NA intron (NM_020433, intron 2 of 5) MLT1L|LTR|ERVL-MaLR 45810 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 121.75-51 chr20 52722634 52723063 + 0.5 NA Intergenic Intergenic 102010 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 115.5-35 chr17 53996107 53996357 + 0.5 NA Intergenic Intergenic 173305 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 158-65 chr8 90797262 90797828 + 0.5 NA intron (NM_022351, intron 1 of 12) intron (NM_022351, intron 1 of 12) 5770 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 244-19 chr4 35202446 35203320 + 0.5 NA Intergenic Intergenic -933136 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 115-23 chr12 26342879 26343337 + 0.5 NA intron (NM_002223, intron 55 of 56) MSTB2|LTR|ERVL-MaLR 147535 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 174.25-7 chr1 66761729 66762242 + 0.5 NA intron (NM_152665, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 9526 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 124.25-47 chr2 55320305 55320761 + 0.5 NA intron (NM_001254943, intron 18 of 33) intron (NM_001254943, intron 18 of 33) 38214 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 132-33 chr2 82353506 82353859 + 0.5 NA Intergenic L1MC3|LINE|L1 -503121 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 130-66 chr5 123026571 123026923 + 0.5 NA intron (NM_000943, intron 3 of 4) intron (NM_000943, intron 3 of 4) 9978 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 114.5-47 chr2 41523460 41523787 + 0.5 NA Intergenic L2a|LINE|L2 -353932 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 127.25-9 chr1 191950909 191951237 + 0.5 NA Intergenic L1MCa|LINE|L1 -207389 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 143-61 chr6 501121 501505 + 0.5 NA intron (NM_018303, intron 23 of 27) intron (NM_018303, intron 23 of 27) 109561 NM_001195286 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 122.5-10 chr10 38581582 38581927 + 0.5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -114842 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 142-73 chr9 36431730 36432225 + 0.5 NA Intergenic MER21C|LTR|ERVL -30779 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 126-73 chr6 63354154 63354449 + 0.5 NA Intergenic L1MA4A|LINE|L1 -34318 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 136.25-78 chr8 63062261 63062533 + 0.5 NA intron (NM_000370, intron 4 of 4) intron (NM_000370, intron 4 of 4) -23591 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 172.25-66 chr6 55811824 55812397 + 0.5 NA intron (NM_001329754, intron 2 of 5) Tigger15a|DNA|TcMar-Tigger 63480 NM_001329756 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 113-71 chr4 165669473 165669862 + 0.5 NA Intergenic Intergenic -14972 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 136.25-80 chr8 100521460 100521995 + 0.5 NA 3' UTR (NM_198401, exon 6 of 6) 3' UTR (NM_198401, exon 6 of 6) 38032 NM_001270377 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 171.75-61 chr8 121978937 121979561 + 0.5 NA Intergenic Intergenic -337809 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 152-25 chr15 42076289 42076688 + 0.5 NA intron (NM_178034, intron 13 of 19) L1ME3Cz|LINE|L1 18074 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 141-2 chr1 68286681 68287128 + 0.5 NA Intergenic Intergenic -54358 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 117.25-61 chr3 193109230 193109684 + 0.5 NA Intergenic MER92-int|LTR|ERV1 -131765 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 151.25-21 chr15 57364565 57365129 + 0.5 NA Intergenic Intergenic -11658 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 117.5-68 chr4 39069011 39069433 + 0.5 NA intron (NM_199039, intron 1 of 9) MLT1J|LTR|ERVL-MaLR 6990 NM_199039 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 164.75-8 chr10 14600120 14600581 + 0.5 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) 4051 NM_001282696 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 161.75-19 chr15 60607801 60608257 + 0.5 NA intron (NR_120342, intron 5 of 5) intron (NR_120342, intron 5 of 5) -15503 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 115.75-20 chr14 38235086 38235429 + 0.5 NA Intergenic Intergenic 20836 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 189.25-4 chr1 163939385 163939856 + 0.5 NA Intergenic THE1D|LTR|ERVL-MaLR -516429 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 153.75-75 chr7 13995999 13996358 + 0.5 NA Intergenic Intergenic -4753 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 113.75-53 chr2 61406521 61406946 + 0.5 NA intron (NM_014709, intron 2 of 79) AluSq|SINE|Alu 10644 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 138.75-85 chr9 131209900 131210387 + 0.5 NA intron (NM_001318324, intron 30 of 35) L1MEf|LINE|L1 20004 NM_001318325 8021 Hs.654530 NM_005085 ENSG00000126883 NUP214 CAIN|CAN nucleoporin 214 protein-coding 146.5-81 chr6 140468623 140469094 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -214956 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 115.25-43 chr17 78948400 78948704 + 0.5 NA Intergenic AluJr|SINE|Alu -23165 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 158-37 chr21 42590969 42591472 + 0.5 NA Intergenic MLT2C1|LTR|ERVL 23875 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 178.25-37 chr3 132735469 132736156 + 0.5 NA intron (NR_002811, intron 3 of 10) ERV24B_Prim-int|LTR|ERV1 -13353 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 119.25-60 chr20 55671318 55671728 + 0.5 NA Intergenic L2b|LINE|L2 -244326 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 159.75-58 chr6 54704396 54704880 + 0.5 NA Intergenic Intergenic -142133 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 133.25-18 chr11 131042410 131042680 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -126058 NM_001347924 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 140-16 chr13 88017573 88017973 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -125094 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 119.25-81 chr6 57187916 57188282 + 0.5 NA non-coding (NR_103822, exon 4 of 4) non-coding (NR_103822, exon 4 of 4) 15773 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 156-24 chr12 55384782 55385196 + 0.5 NA Intergenic Intergenic -15540 NM_001005518 403282 Hs.554553 NM_001005518 ENSG00000205328 OR6C65 - olfactory receptor family 6 subfamily C member 65 protein-coding 169-50 chr8 66547136 66547580 + 0.5 NA Intergenic AluJb|SINE|Alu 53792 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 140-46 chr4 105705032 105705427 + 0.5 NA intron (NM_020395, intron 1 of 7) MER1A|DNA|hAT-Charlie 3460 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 118.25-6 chr10 32082325 32082688 + 0.5 NA Intergenic AluSq2|SINE|Alu -26081 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 154.5-13 chr10 61807066 61807544 + 0.5 NA Intergenic ERVL-B4-int|LTR|ERVL -94394 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 112.75-43 chr19 44441564 44441933 + 0.5 NA intron (NM_001278510, intron 4 of 5) intron (NM_001278510, intron 4 of 5) 6724 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 186-12 chr11 133287234 133287923 + 0.5 NA intron (NM_001012393, intron 1 of 7) A-rich|Low_complexity|Low_complexity 244923 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 126.75-4 chr1 81430393 81430712 + 0.5 NA intron (NM_001366004, intron 2 of 27) intron (NM_001366004, intron 2 of 27) 124157 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 165.75-61 chr6 40380909 40381456 + 0.5 NA Intergenic Intergenic 2845 NR_160959 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 123.5-5 chr1 82727896 82728251 + 0.5 NA Intergenic L1MD1|LINE|L1 -175110 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 133.25-27 chr15 46134869 46135332 + 0.5 NA Intergenic L1M3c|LINE|L1 429905 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 157.5-32 chr16 34585840 34586363 + 0.5 NA Intergenic Intergenic -204621 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 150.75-39 chr20 1435924 1436456 + 0.5 NA Intergenic Intergenic 31502 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 168-4 chr1 102337884 102338516 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -340966 NR_110211 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 116.75-38 chr2 12339413 12339798 + 0.5 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 140475 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 129-77 chr8 72168202 72168517 + 0.5 NA Intergenic L1PA15|LINE|L1 83275 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 157.75-9 chr10 20490776 20491363 + 0.5 NA Intergenic Intergenic -60901 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 118.25-30 chr14 71711685 71712005 + 0.5 NA intron (NM_001354286, intron 18 of 24) intron (NM_001354286, intron 18 of 24) 125547 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 148.5-75 chr4 119040386 119040774 + 0.5 NA 3' UTR (NM_001128933, exon 4 of 4) 3' UTR (NM_001128933, exon 4 of 4) -95204 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 132.75-86 chr6 43845393 43845843 + 0.5 NA non-coding (NR_149142, exon 4 of 4) non-coding (NR_149142, exon 4 of 4) 6715 NR_149142 285857 Hs.582798 NR_149142 ENSG00000283215 LINC02537 - long intergenic non-protein coding RNA 2537 ncRNA 119.5-95 chr5 15587723 15587963 + 0.5 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 27159 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 113.5-29 chr12 101503620 101504011 + 0.5 NA Intergenic HAL1|LINE|L1 28479 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 120-10 chr1 154752230 154752600 + 0.5 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) 107461 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 119.25-36 chr17 66573712 66573982 + 0.5 NA intron (NM_002737, intron 3 of 16) FLAM_A|SINE|Alu -156993 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 123.25-38 chr2 24591165 24591445 + 0.5 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 6828 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 122-20 chr13 107648026 107648320 + 0.5 NA intron (NM_001080396, intron 1 of 2) L1MC2|LINE|L1 -116925 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 133.5-55 chr20 45377592 45378050 + 0.5 NA intron (NM_014477, intron 1 of 4) AluSz|SINE|Alu 504 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 118.75-52 chr2 103571133 103571549 + 0.5 NA Intergenic L1MB5|LINE|L1 -586912 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 114.75-60 chr3 29310298 29310717 + 0.5 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 29195 NM_014483 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 113.75-61 chr2 170083117 170083469 + 0.5 NA 3' UTR (NM_172070, exon 39 of 39) 3' UTR (NM_172070, exon 39 of 39) -94854 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 157.5-35 chr17 33149770 33150153 + 0.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 143027 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 114.5-111 chr9 37041366 37041733 + 0.5 NA Intergenic Intergenic -7281 NM_001280547 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 113.5-121 chr8 123910276 123910615 + 0.5 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 58458 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 134.25-21 chr14 78795043 78795508 + 0.5 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 391556 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 127.25-94 chr8 130637683 130638111 + 0.5 NA Intergenic Intergenic -194223 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 132.25-19 chr12 9040391 9040779 + 0.5 NA Intergenic Kanga1a|DNA|TcMar-Tc2 24485 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 124.5-53 chr2 55850477 55850832 + 0.5 NA Intergenic MER65-int|LTR|ERV1 73128 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 123.75-98 chr7 44826654 44827054 + 0.5 NA TTS (NM_138635) TTS (NM_138635) 21272 NM_138635 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 119.75-82 chr8 5407232 5407691 + 0.5 NA Intergenic Charlie10|DNA|hAT-Charlie -412547 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 116.75-20 chr12 116391177 116391566 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 36947 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 114.25-45 chr18 8907753 8908141 + 0.5 NA Intergenic MER41-int|LTR|ERV1 190566 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 114.5-20 chr14 71100306 71100673 + 0.5 NA intron (NM_014982, intron 30 of 35) L1PA16|LINE|L1 193030 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 136.75-93 chr7 50740768 50741250 + 0.5 NA intron (NM_001371008, intron 1 of 15) L1MC4|LINE|L1 -8656 NM_001001549 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 113.75-86 chr4 188778363 188778813 + 0.5 NA intron (NR_149102, intron 1 of 2) intron (NR_149102, intron 1 of 2) 1931 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 131.25-48 chr2 209543736 209543998 + 0.5 NA intron (NM_001039538, intron 2 of 14) intron (NM_001039538, intron 2 of 14) -35469 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 175.25-34 chr20 11193888 11194549 + 0.5 NA Intergenic MIRc|SINE|MIR 79165 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 139.75-61 chr5 74313204 74313596 + 0.5 NA Intergenic MER4D1|LTR|ERV1 -5075 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 115.25-32 chr14 34662216 34662597 + 0.5 NA Intergenic L1MEc|LINE|L1 -32258 NM_001366519 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 120.25-32 chr18 11428669 11428957 + 0.5 NA Intergenic L1ME1|LINE|L1 -25665 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 142.25-16 chr12 90352667 90353155 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 59593 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 139.25-86 chr9 16879076 16879418 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -8577 NM_017637 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 139.5-90 chr6 40068819 40069274 + 0.5 NA Intergenic Intergenic -134584 NM_001358533 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 114-71 chr5 132029305 132029748 + 0.5 NA Intergenic L1ME3|LINE|L1 -17458 NM_001205250 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 166.5-37 chr15 63825962 63826411 + 0.5 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 7762 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 119-69 chr7 33137665 33137931 + 0.5 NA intron (NM_001348044, intron 1 of 18) intron (NM_001348044, intron 1 of 18) 8234 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 126.5-8 chr1 100022704 100023039 + 0.5 NA 3' UTR (NM_012243, exon 8 of 8) 3' UTR (NM_012243, exon 8 of 8) -15224 NM_033055 64645 Hs.124156 NM_033055 ENSG00000156875 MFSD14A HIAT1 major facilitator superfamily domain containing 14A protein-coding 188.75-24 chr3 2535377 2536000 + 0.5 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 296859 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 157.75-74 chr8 84705813 84706339 + 0.5 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 149 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 118.5-94 chr6 114344395 114344682 + 0.5 NA Intergenic Intergenic -281661 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 170.5-80 chr7 131167481 131168067 + 0.5 NA intron (NM_001145354, intron 2 of 18) L1ME4c|LINE|L1 57680 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 165.25-23 chr2 58597068 58597591 + 0.5 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 76576 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 255.5-12 chr2 55088241 55088915 + 0.5 NA intron (NM_001321904, intron 1 of 9) intron (NM_001321904, intron 1 of 9) -37306 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 127.5-69 chr2 193432058 193432350 + 0.5 NA Intergenic Intergenic 682359 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 145.75-71 chr8 89400268 89400831 + 0.5 NA Intergenic Intergenic 357162 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 135.25-67 chr4 61236429 61236853 + 0.5 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 34469 NM_001371342 138.25-11 chr10 60278807 60279288 + 0.5 NA intron (NM_001204403, intron 4 of 43) intron (NM_001204403, intron 4 of 43) 110828 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 131-28 chr2 21080507 21080857 + 0.5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -36609 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 145.25-82 chr8 68466029 68466469 + 0.5 NA intron (NR_146187, intron 3 of 13) L1MA4A|LINE|L1 -134758 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 114.25-66 chr20 57191093 57191398 + 0.5 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -22451 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 132.5-58 chr2 183956782 183957159 + 0.5 NA Intergenic Intergenic -422005 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 113.25-84 chr3 67592382 67592682 + 0.5 NA intron (NM_001177599, intron 2 of 10) MIRc|SINE|MIR 62082 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 170-26 chr2 233381487 233381869 + 0.5 NA intron (NM_152879, intron 1 of 29) intron (NM_152879, intron 1 of 29) -6476 NM_003648 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 113.75-11 chr1 170821188 170821535 + 0.5 NA Intergenic Intergenic -114110 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 114.25-101 chr8 17016275 17016644 + 0.5 NA Intergenic Intergenic -10779 NR_146233 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 114-87 chr7 138062193 138062476 + 0.5 NA Intergenic Intergenic -14125 NM_001190906 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 131-31 chr2 173226393 173226730 + 0.5 NA 3' UTR (NM_133646, exon 12 of 12) 3' UTR (NM_133646, exon 12 of 12) 55475 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 113-40 chr18 38629995 38630417 + 0.5 NA Intergenic Intergenic 973071 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 127.25-4 chr1 102621294 102621643 + 0.5 NA Intergenic L1PA12|LINE|L1 487028 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 177.5-12 chr11 79483000 79483512 + 0.5 NA Intergenic Intergenic -42226 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 121.75-2 chr1 88352369 88352676 + 0.5 NA Intergenic L2b|LINE|L2 -331622 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 124-73 chr8 46389326 46389781 + 0.5 NA Intergenic GSAT|Satellite|centr 228090 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 150.5-17 chr12 33553727 33554184 + 0.5 NA Intergenic L1ME1|LINE|L1 -114136 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 130.5-73 chr5 113985934 113986362 + 0.5 NA Intergenic Intergenic -375922 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 165.75-14 chr11 67157908 67158382 + 0.5 NA intron (NR_027473, intron 2 of 20) L1MC2|LINE|L1 38882 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 230.75-22 chr6 25594976 25595734 + 0.5 NA intron (NM_001173977, intron 32 of 36) intron (NM_001173977, intron 32 of 36) -56860 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 115-53 chr3 23174284 23174560 + 0.5 NA Intergenic Intergenic 28156 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 145.75-44 chr2 235285413 235285865 + 0.5 NA Intergenic Intergenic -208404 NM_014914 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 134.25-41 chr2 169221922 169222233 + 0.5 NA intron (NM_004525, intron 33 of 78) intron (NM_004525, intron 33 of 78) 140457 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 118.25-101 chr7 57424013 57424309 + 0.5 NA Intergenic Intergenic 19136 NR_036102 100422939 NR_036102 ENSG00000266168 MIR3147 mir-3147 microRNA 3147 ncRNA 129.5-35 chr15 88051668 88051955 + 0.5 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) -105543 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 178.5-47 chr3 45728091 45728801 + 0.5 NA intron (NM_001319071, intron 11 of 19) L1MB4|LINE|L1 39050 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 127.75-8 chr10 26916945 26917396 + 0.5 NA Intergenic Intergenic 24831 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 125.5-7 chr1 159794045 159794341 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -6319 NM_001284217 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 163.75-68 chr7 54873703 54874141 + 0.5 NA Intergenic AluSq2|SINE|Alu 114609 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 122-65 chr6 20686716 20687121 + 0.5 NA intron (NM_017774, intron 5 of 15) L1MC1|LINE|L1 152461 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 122.75-73 chr6 83061783 83062198 + 0.5 NA intron (NM_001304437, intron 1 of 9) L2a|LINE|L2 3851 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 124.25-62 chr4 48599240 48599544 + 0.5 NA intron (NM_015030, intron 13 of 63) intron (NM_015030, intron 13 of 63) 109140 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 112.75-89 chr9 109230877 109231322 + 0.5 NA intron (NM_019114, intron 15 of 25) AluSx|SINE|Alu -63808 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 144.5-77 chr4 24899541 24899936 + 0.5 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) 13240 NM_001330643 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 127.25-8 chr1 170399862 170400237 + 0.5 NA Intergenic L1PA16|LINE|L1 -115841 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 138.25-18 chr11 114176698 114177069 + 0.5 NA intron (NM_001354752, intron 2 of 4) intron (NM_001354752, intron 2 of 4) 113672 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 136.5-68 chr3 14747263 14747765 + 0.5 NA intron (NM_001184957, intron 12 of 16) MER65-int|LTR|ERV1 63900 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 158-18 chr14 98544950 98545386 + 0.5 NA Intergenic Intergenic -166445 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 118.5-115 chr8 107133049 107133347 + 0.5 NA Intergenic Intergenic 203317 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 128.75-62 chr3 115939327 115939830 + 0.5 NA intron (NM_001318915, intron 3 of 8) (TCTT)n|Simple_repeat|Simple_repeat -34452 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 153.75 chr1 4235612 4236125 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -176183 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 118.5-47 chr18 8056270 8056737 + 0.5 NA intron (NM_002845, intron 7 of 30) AluSq4|SINE|Alu 310531 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 123-18 chr13 97739805 97740217 + 0.5 NA Intergenic HAL1|LINE|L1 -213664 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 131.75-66 chr6 17937655 17938024 + 0.5 NA intron (NM_001105567, intron 2 of 36) AluSx|SINE|Alu 49796 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 127.75-62 chr4 60707470 60707976 + 0.5 NA Intergenic Intergenic -214896 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 118.25-38 chr16 81051674 81051956 + 0.5 NA Intergenic AluSx1|SINE|Alu 14617 NM_001300728 23300 Hs.16349 NM_015251 ENSG00000166454 ATMIN ASCIZ|ZNF822 ATM interactor protein-coding 136.5-61 chr20 53665999 53666456 + 0.5 NA Intergenic MLT1H|LTR|ERVL-MaLR 57873 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 183.75-59 chr8 130350639 130351166 + 0.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -54369 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 140.25-71 chr5 114785452 114785871 + 0.5 NA Intergenic Intergenic -12248 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 141.25-22 chr12 65359613 65359913 + 0.5 NA intron (NM_001031679, intron 4 of 6) intron (NM_001031679, intron 4 of 6) 80776 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 126.75-52 chr20 43242051 43242368 + 0.5 NA Intergenic MIRb|SINE|MIR -52303 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 132.75-67 chr3 188011576 188012007 + 0.5 NA Intergenic L1MD1|LINE|L1 -35384 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 125.25-34 chr18 64716542 64716991 + 0.5 NA Intergenic Intergenic -456711 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 160.75-22 chr14 61733376 61733863 + 0.5 NA intron (NM_181054, intron 7 of 13) intron (NM_181054, intron 7 of 13) 15470 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 134.75-53 chr5 15019127 15019515 + 0.5 NA Intergenic Intergenic -147543 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 123-69 chr8 137249577 137249941 + 0.5 NA Intergenic L1PB4|LINE|L1 163829 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 157.5-10 chr10 52539685 52540066 + 0.5 NA Intergenic Intergenic -69342 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 123.5-48 chr2 30414714 30415007 + 0.5 NA Intergenic L1MB7|LINE|L1 -32386 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 133.75-21 chr13 51635314 51635622 + 0.5 NA intron (NM_052950, intron 1 of 11) intron (NM_052950, intron 1 of 11) 51006 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 142.5-44 chr2 120206674 120207135 + 0.5 NA Intergenic Intergenic 16496 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 113.25-58 chr18 24434186 24434412 + 0.5 NA intron (NM_018439, intron 4 of 10) AluJr|SINE|Alu 7629 NM_018439 55364 Hs.515317 NM_018439 ENSG00000154059 IMPACT RWDD5 impact RWD domain protein protein-coding 152.25-65 chr8 72958545 72959082 + 0.5 NA Intergenic AluJb|SINE|Alu -50051 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 123-54 chr6 72518681 72518973 + 0.5 NA Intergenic Intergenic -103016 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 113-106 chr9 114225471 114225792 + 0.5 NA intron (NM_032888, intron 14 of 60) intron (NM_032888, intron 14 of 60) 16197 NR_030255 619556 NR_030255 ENSG00000207726 MIR455 MIRN455|hsa-mir-455|mir-455 microRNA 455 ncRNA 128-50 chr5 2245118 2245433 + 0.5 NA Intergenic HERVL-int|LTR|ERVL 66926 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 129.75-5 chr1 212955010 212955468 + 0.5 NA intron (NM_001301056, intron 2 of 7) intron (NM_001301056, intron 2 of 7) 4698 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 150-22 chr14 21438846 21439301 + 0.5 NA intron (NM_001170629, intron 1 of 37) AluSz6|SINE|Alu -1798 NM_020920 57680 Hs.530698 NM_020920 ENSG00000100888 CHD8 AUTS18|HELSNF1 chromodomain helicase DNA binding protein 8 protein-coding 153-54 chr9 97928928 97929312 + 0.5 NA intron (NM_018437, intron 4 of 4) intron (NM_018437, intron 4 of 4) -6550 NM_001330725 51531 Hs.9196 NM_016481 ENSG00000136932 TRMO C9orf156|HSPC219|NAP1 tRNA methyltransferase O protein-coding 113.5-13 chr10 12173931 12174225 + 0.5 NA intron (NM_001321648, intron 6 of 10) AluSg7|SINE|Alu 21813 NM_014142 11164 Hs.555956 NM_014142 ENSG00000165609 NUDT5 YSA1|YSA1H|YSAH1|hNUDT5 nudix hydrolase 5 protein-coding 132.25-9 chr10 67523356 67523796 + 0.5 NA intron (NM_001127384, intron 4 of 17) intron (NM_001127384, intron 4 of 17) -120166 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 112.75-88 chr9 106324609 106324918 + 0.5 NA Intergenic Intergenic -276165 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 116.75-59 chr5 51282657 51283000 + 0.5 NA Intergenic Intergenic 100504 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 132.5-28 chr14 63811243 63811730 + 0.5 NA Intergenic AluJb|SINE|Alu -41479 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 172.25-28 chr18 44263314 44263863 + 0.5 NA Intergenic Tigger3a|DNA|TcMar-Tigger 268109 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 133.75-62 chr5 5786293 5786703 + 0.5 NA Intergenic L1MD2|LINE|L1 363821 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 120.5-66 chr3 110471825 110472220 + 0.5 NA Intergenic Intergenic 597937 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 161.5-67 chr5 30568658 30569011 + 0.5 NA Intergenic Intergenic -624852 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 125.5-114 chr6 140387509 140387997 + 0.5 NA Intergenic L1M4b|LINE|L1 182501 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 175.5-36 chr17 72676406 72677003 + 0.5 NA intron (NM_001352692, intron 7 of 9) MER68|LTR|ERVL -36232 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 152.5-70 chr3 107827912 107828495 + 0.5 NA Intergenic Intergenic 49865 NR_024276 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 134-3 chr1 45732603 45732961 + 0.5 NA intron (NM_001145349, intron 3 of 9) AluY|SINE|Alu 17871 NM_005897 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 153.25-47 chr6 45690007 45690473 + 0.5 NA Intergenic Intergenic 247357 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 116.5-102 chr6 67462933 67463377 + 0.5 NA Intergenic L1PA7|LINE|L1 -592196 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 162.75-12 chr11 131327963 131328509 + 0.5 NA Intergenic MIR|SINE|MIR -42379 NM_001352003 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 122.5-65 chr4 108804648 108805008 + 0.5 NA Intergenic Intergenic -41775 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 123.75-50 chr19 40225379 40225806 + 0.5 NA intron (NM_024877, intron 1 of 4) L2b|LINE|L2 1097 NM_024877 79935 Hs.631603 NM_024877 ENSG00000105219 CNTD2 CCNP cyclin N-terminal domain containing 2 protein-coding 155.75-71 chr8 126696419 126696964 + 0.5 NA Intergenic L2c|LINE|L2 -138213 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 143.75-26 chr12 65374647 65375209 + 0.5 NA intron (NM_001031679, intron 5 of 6) AluY|SINE|Alu 95941 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 134.25-75 chr6 8958024 8958477 + 0.5 NA Intergenic Intergenic 306041 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 141.5-103 chr6 132054787 132055306 + 0.5 NA Intergenic MER33|DNA|hAT-Charlie 60217 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 115.25-96 chrY 11305251 11305573 + 0.5 NA Intergenic BSR/Beta|Satellite|Satellite 1116178 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 147-17 chr11 101093779 101094229 + 0.5 NA intron (NM_000926, intron 2 of 7) intron (NM_000926, intron 2 of 7) 35059 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 139.75-36 chr17 54422349 54422823 + 0.5 NA Intergenic L1PB1|LINE|L1 -478105 NM_001321174 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 154.25-44 chr21 30949281 30949679 + 0.5 NA Intergenic L1M4|LINE|L1 -67900 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 113.25-10 chr1 209745392 209745728 + 0.5 NA Intergenic Intergenic -2998 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 119.75-32 chr16 19489491 19489898 + 0.5 NA intron (NM_001105249, intron 17 of 20) AluJr|SINE|Alu 32404 NM_001324067 51573 Hs.512607 NM_016641 ENSG00000006007 GDE1 363E6.2|MIR16 glycerophosphodiester phosphodiesterase 1 protein-coding 129.75-4 chr1 174024311 174024606 + 0.5 NA Intergenic AluSc|SINE|Alu -31386 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 122-46 chr3 64783448 64783787 + 0.5 NA intron (NR_038264, intron 1 of 5) MLT1A|LTR|ERVL-MaLR -95617 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 152.5-85 chr4 155833113 155833707 + 0.5 NA intron (NM_017419, intron 8 of 9) intron (NM_017419, intron 8 of 9) 32867 NM_017419 51802 Hs.381349 NM_017419 ENSG00000256394 ASIC5 ACCN5|HINAC|INAC acid sensing ion channel subunit family member 5 protein-coding 112.75-36 chr16 57272917 57273310 + 0.5 NA intron (NM_015993, intron 1 of 3) AluY|SINE|Alu 11559 NM_015993 51090 Hs.632215 NM_015993 ENSG00000102934 PLLP PMLP|TM4SF11 plasmolipin protein-coding 148.75-23 chr16 54996881 54997394 + 0.5 NA Intergenic Intergenic 65938 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 116-36 chr19 41775990 41776364 + 0.5 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -20410 NM_001277163 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 116-5 chr1 150783793 150784148 + 0.5 NA Intergenic AluJb|SINE|Alu -18192 NM_004079 1520 Hs.181301 NM_004079 ENSG00000163131 CTSS - cathepsin S protein-coding 130.75-41 chr2 142402348 142402676 + 0.5 NA Intergenic L1M2a|LINE|L1 -270811 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 113.75-50 chr2 36009495 36009800 + 0.5 NA Intergenic Intergenic 345923 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 139.5-89 chr6 21914985 21915293 + 0.5 NA intron (NR_015410, intron 5 of 11) MER101|LTR|ERV1 232054 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 161.25-77 chr8 71881829 71882275 + 0.5 NA intron (NR_033651, intron 1 of 2) L1MA1|LINE|L1 -37556 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 114-84 chr7 40224669 40225106 + 0.5 NA intron (NM_024728, intron 6 of 14) L1PBb|LINE|L1 89911 NM_001193312 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 167.5-29 chr17 47145181 47145605 + 0.5 NA intron (NM_001256, intron 9 of 18) L1MEc|LINE|L1 43902 NM_001353035 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 125.5-10 chr1 224424841 224425110 + 0.5 NA intron (NM_001115113, intron 3 of 13) intron (NM_001115113, intron 3 of 13) 9324 NM_025160 80232 Hs.497873 NM_025160 ENSG00000162923 WDR26 CDW2|GID7|MIP2|SKDEAS WD repeat domain 26 protein-coding 159-70 chr9 121140537 121140910 + 0.5 NA exon (NM_001369895, exon 16 of 32) exon (NM_001369895, exon 16 of 32) 18953 NR_163191 11064 Hs.653263 NM_007018 ENSG00000119397 CNTRL CEP1|CEP110|FAN|bA165P4.1 centriolin protein-coding 147-36 chr19 46896841 46897370 + 0.5 NA intron (NM_004491, intron 1 of 6) AluSz6|SINE|Alu 36108 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 126.25-88 chr8 100035988 100036457 + 0.5 NA intron (NM_015668, intron 14 of 27) intron (NM_015668, intron 14 of 27) 31640 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 128.75-19 chr12 24757848 24758307 + 0.5 NA Intergenic Intergenic 144145 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 159-15 chr12 92067451 92067821 + 0.5 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 74077 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 143-2 chr1 163193726 163194063 + 0.5 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 9022 NM_001195303 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 127-8 chr1 229944577 229944918 + 0.5 NA Intergenic Intergenic -50839 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 131.25-72 chr5 99179186 99179660 + 0.5 NA Intergenic Intergenic -249709 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 141-27 chr16 86097889 86098245 + 0.5 NA Intergenic L1MD|LINE|L1 -98114 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 129-44 chr22 19480419 19480782 + 0.5 NA intron (NM_001369291, intron 2 of 18) intron (NM_001369291, intron 2 of 18) 680 NR_161281 8318 Hs.474217 NM_003504 ENSG00000093009 CDC45 CDC45L|CDC45L2|MGORS7|PORC-PI-1 cell division cycle 45 protein-coding 152.75-18 chr16 2264722 2265144 + 0.5 NA intron (NM_080594, intron 1 of 7) intron (NM_080594, intron 1 of 7) 2404 NM_001286625 10921 Hs.355643 NM_006711 ENSG00000205937 RNPS1 E5.1 RNA binding protein with serine rich domain 1 protein-coding 138-58 chr5 75163205 75163560 + 0.5 NA intron (NM_001164443, intron 11 of 24) Tigger4|DNA|TcMar-Tigger 73496 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 127.5-46 chr17 33948197 33948656 + 0.5 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 208380 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 132.5-82 chr4 94813759 94814220 + 0.5 NA intron (NM_001203, intron 1 of 12) L2a|LINE|L2 56034 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 114-61 chr3 189562191 189562570 + 0.5 NA Intergenic MER63C|DNA|hAT-Blackjack -34366 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 119-6 chr1 179098650 179098994 + 0.5 NA TTS (NM_005158) TTS (NM_005158) 16752 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 121.5-9 chr1 190996072 190996457 + 0.5 NA Intergenic L1MC5|LINE|L1 232234 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 141.75-27 chr16 12964547 12964897 + 0.5 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 63124 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 132.25-57 chr22 25956071 25956415 + 0.5 NA intron (NM_001318245, intron 39 of 43) AluSx3|SINE|Alu -213219 NM_001184776 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 119.5-18 chr11 9650580 9650832 + 0.5 NA Intergenic AluJr|SINE|Alu -13371 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 123.25-45 chr2 129744860 129745266 + 0.5 NA Intergenic Intergenic 132428 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 114.5-59 chr2 217854237 217854605 + 0.5 NA intron (NM_001308023, intron 15 of 29) intron (NM_001308023, intron 15 of 29) -20688 NR_145792 109623482 NR_145792 SNORA115 - small nucleolar RNA, H/ACA box 115 snoRNA 130-80 chr8 65181789 65182215 + 0.5 NA Intergenic Intergenic -1662 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 137.5-72 chr20 51839123 51839479 + 0.5 NA intron (NR_110016, intron 2 of 2) intron (NR_110016, intron 2 of 2) 23612 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 114-48 chr2 123667516 123667895 + 0.5 NA Intergenic L2|LINE|L2 357469 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 148-46 chr3 178592221 178592722 + 0.5 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 33621 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 153-43 chr5 83349049 83349476 + 0.5 NA intron (NM_022550, intron 7 of 7) MSTA|LTR|ERVL-MaLR -122412 NM_001164097 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 136.25-63 chr4 162057003 162057447 + 0.5 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 34492 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 118.25-81 chr5 82353131 82353541 + 0.5 NA Intergenic Intergenic 73874 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 118.25-58 chr22 28541252 28541683 + 0.5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 81598 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 147-78 chr8 130098771 130099182 + 0.5 NA intron (NM_018482, intron 24 of 29) L1MA5|LINE|L1 -14208 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 129.25-5 chr1 205574936 205575347 + 0.5 NA intron (NM_181644, intron 1 of 9) intron (NM_181644, intron 1 of 9) -5836 NR_027086 284578 Hs.537020 NR_027086 MFSD4A-AS1 - MFSD4A antisense RNA 1 ncRNA 135-83 chrX 82697686 82698110 + 0.5 NA Intergenic Intergenic -810392 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 154.75-65 chr8 128180768 128181282 + 0.5 NA Intergenic L3|LINE|CR1 30909 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 123.5-57 chr20 12420131 12420589 + 0.5 NA Intergenic Intergenic 502467 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 165-36 chr20 31064971 31065434 + 0.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -192462 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 132.75-98 chr8 78339901 78340352 + 0.5 NA Intergenic L1MEd|LINE|L1 -176214 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 143.25-63 chr5 103605835 103606271 + 0.5 NA Intergenic Intergenic -43264 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 112.75-8 chr1 235333194 235333557 + 0.5 NA intron (NR_036605, intron 1 of 2) AluSq|SINE|Alu 4805 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 114.25-24 chr12 14931456 14931871 + 0.5 NA intron (NM_152321, intron 3 of 6) intron (NM_152321, intron 3 of 6) -2538 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 117.75-60 chr4 46850081 46850454 + 0.5 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 58978 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 135.75-37 chr17 17679777 17680048 + 0.5 NA Intergenic MIRb|SINE|MIR -1546 NM_030665 10743 Hs.655395 NM_030665 ENSG00000108557 RAI1 SMCR|SMS retinoic acid induced 1 protein-coding 136.5-59 chr20 33161646 33162069 + 0.5 NA promoter-TSS (NM_001319164) promoter-TSS (NM_001319164) 87 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 159-64 chr8 126809009 126809439 + 0.5 NA Intergenic L2b|LINE|L2 -203930 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 143-23 chr13 85130423 85130763 + 0.5 NA intron (NR_126383, intron 1 of 5) MER3|DNA|hAT-Charlie 17464 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 131.5-18 chr11 112405159 112405660 + 0.5 NA Intergenic L2b|LINE|L2 -76823 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 137-65 chr8 23926830 23927373 + 0.5 NA Intergenic AluSg|SINE|Alu -72295 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 154.75-40 chr21 29480386 29480918 + 0.5 NA Intergenic Intergenic -15395 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 133-26 chr16 54496292 54496651 + 0.5 NA Intergenic MER113|DNA|hAT-Charlie -125772 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 143.5-19 chr12 4163377 4163947 + 0.5 NA Intergenic Charlie2a|DNA|hAT-Charlie -110100 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 146.75-60 chr7 52576011 52576392 + 0.5 NA Intergenic MLT2B3|LTR|ERVL -459432 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 119.5-105 chr6 56087410 56087856 + 0.5 NA intron (NM_030820, intron 17 of 29) Tigger2|DNA|TcMar-Tigger 4029 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 118.25-68 chr4 17570071 17570484 + 0.5 NA Intergenic LTR9B|LTR|ERV1 -7027 NM_015907 51056 Hs.570791 NM_015907 ENSG00000002549 LAP3 HEL-S-106|LAP|LAPEP|PEPS leucine aminopeptidase 3 protein-coding 121-66 chr7 3450702 3451078 + 0.5 NA intron (NM_152744, intron 1 of 44) L2c|LINE|L2 149638 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 113.25-69 chr2 39994473 39994787 + 0.5 NA intron (NR_038441, intron 2 of 4) Tigger3|DNA|TcMar-Tigger 76996 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 113-81 chr5 102062931 102063211 + 0.5 NA Intergenic L1M3|LINE|L1 233213 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 129.5-36 chr15 99678872 99679195 + 0.5 NA 3' UTR (NM_001365211, exon 8 of 8) 3' UTR (NM_001365211, exon 8 of 8) 46055 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 130-69 chr6 15681668 15682065 + 0.5 NA Intergenic Intergenic -18808 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 173.25-23 chr17 81355954 81356406 + 0.5 NA Intergenic AluSp|SINE|Alu 28945 NM_001347841 100130370 Hs.646594 NM_001272086 LOC100130370 - uncharacterized LOC100130370 protein-coding 137.5-82 chr4 73016356 73016730 + 0.5 NA Intergenic Intergenic 53173 NM_173827 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 116.5-108 chr7 33635714 33636045 + 0.5 NA TTS (NM_001362679) TTS (NM_001362679) -269036 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 118.75-49 chr2 83347050 83347477 + 0.5 NA Intergenic L1MD2|LINE|L1 -175551 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 164.25-26 chr19 5632672 5633124 + 0.5 NA intron (NM_001320571, intron 2 of 18) AluJr|SINE|Alu 9815 NM_001320572 6294 Hs.728802 NM_002967 ENSG00000160633 SAFB HAP|HET|SAB-B1|SAF-B|SAF-B1|SAFB1 scaffold attachment factor B protein-coding 114.5-92 chr7 7694013 7694415 + 0.5 NA intron (NM_002947, intron 2 of 7) L1M|LINE|L1 24393 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 117-39 chr2 121087584 121087900 + 0.5 NA Intergenic Intergenic 197460 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 122-75 chr8 131492000 131492445 + 0.5 NA Intergenic MLT2A2|LTR|ERVL -411871 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 137-26 chr14 73655445 73655844 + 0.5 NA intron (NM_001201366, intron 3 of 8) AluSq2|SINE|Alu 10658 NM_031427 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 124.5-77 chr4 42644805 42645201 + 0.5 NA intron (NM_001105529, intron 1 of 35) intron (NM_001105529, intron 1 of 35) 12102 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 134.25-35 chr2 32764148 32764475 + 0.5 NA intron (NM_017735, intron 13 of 19) Tigger1|DNA|TcMar-Tigger -61122 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 119.25-15 chr11 71983592 71984030 + 0.5 NA intron (NM_018320, intron 4 of 8) intron (NM_018320, intron 4 of 8) -15098 NM_001039660 10068 Hs.591967 NM_005699 ENSG00000137496 IL18BP IL18BPa interleukin 18 binding protein protein-coding 223.5-41 chr2 192018215 192018766 + 0.5 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) -171402 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 132.75-88 chr6 105444339 105444802 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner -41488 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 113.5-73 chr22 42709947 42710224 + 0.5 NA intron (NM_001318038, intron 1 of 2) L1M3|LINE|L1 10785 NM_017436 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 133-29 chr17 57953961 57954404 + 0.5 NA intron (NM_001271875, intron 1 of 10) intron (NM_001271875, intron 1 of 10) 1230 NM_001271875 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 163.25-10 chr10 80174401 80175021 + 0.5 NA intron (NM_001157, intron 1 of 14) AluSz6|SINE|Alu 29780 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ALS23|ANX11|CAP-50|CAP50 annexin A11 protein-coding 167.5-70 chr5 117787768 117788213 + 0.5 NA intron (NR_104997, intron 1 of 2) LTR40a|LTR|ERVL 57629 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 154-55 chr5 158608223 158608592 + 0.5 NA Intergenic MER90a|LTR|ERV1 -198634 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 146.25-3 chr1 95540976 95541321 + 0.5 NA Intergenic L1MA9|LINE|L1 31032 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 137.5-38 chr15 71732147 71732578 + 0.5 NA intron (NM_001286429, intron 4 of 11) intron (NM_001286429, intron 4 of 11) -40823 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 143.75-37 chr14 77859309 77859797 + 0.5 NA intron (NM_001366489, intron 4 of 9) intron (NM_001366489, intron 4 of 9) 59444 NM_001366489 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 138-42 chr2 171398699 171399208 + 0.5 NA intron (NM_024770, intron 1 of 9) intron (NM_024770, intron 1 of 9) 35037 NM_001321159 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 134-32 chr2 32502301 32502648 + 0.5 NA intron (NM_016252, intron 47 of 73) intron (NM_016252, intron 47 of 73) -29679 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 148-3 chr1 237957021 237957472 + 0.5 NA Intergenic FLAM_C|SINE|Alu -66324 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 131.5-6 chr1 233201495 233201903 + 0.5 NA intron (NM_014801, intron 13 of 33) intron (NM_014801, intron 13 of 33) 94026 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 122.75-80 chr8 59441296 59441692 + 0.5 NA Intergenic L1MA2|LINE|L1 322284 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 121.75-66 chr4 106436499 106436931 + 0.5 NA intron (NR_147150, intron 2 of 3) L1M3|LINE|L1 3091 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 138.25-22 chr13 36036541 36037022 + 0.5 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 94601 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 134.75-49 chr3 76564577 76565038 + 0.5 NA Intergenic Intergenic -475292 NM_002942 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 128.25-5 chr1 114852394 114852810 + 0.5 NA Intergenic Intergenic -2201 NM_001282541 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 146.75-35 chr4 58725796 58726377 + 0.5 NA Intergenic L2a|LINE|L2 -189758 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 116.25-51 chr2 141505235 141505468 + 0.5 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 626350 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 151 chr1 111595002 111595584 + 0.5 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) 13025 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 142.25-70 chr7 111574648 111575180 + 0.5 NA Intergenic L1MA1|LINE|L1 -12397 NM_001350961 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 152-4 chr1 95350011 95350571 + 0.5 NA TTS (NR_146486) TTS (NR_146486) 1816 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 113-23 chr12 106428794 106429139 + 0.5 NA intron (NM_001160708, intron 13 of 27) intron (NM_001160708, intron 13 of 27) 70884 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 126.25-73 chr5 69185742 69186058 + 0.5 NA Intergenic Intergenic -3683 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 133-52 chr5 32442885 32443295 + 0.5 NA intron (NM_016107, intron 2 of 19) MIRc|SINE|MIR 1650 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 117-76 chr6 120144461 120144746 + 0.5 NA Intergenic Intergenic 129424 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 128.75-64 chr3 124474454 124474797 + 0.5 NA intron (NM_001024660, intron 25 of 59) intron (NM_001024660, intron 25 of 59) 100293 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 128.25-25 chr14 87569059 87569415 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR 86057 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 171-48 chr6 64760223 64760700 + 0.5 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -540957 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 155.5-95 chr8 126217767 126218251 + 0.5 NA Intergenic Intergenic -107486 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 201.25-44 chr9 113475789 113476580 + 0.5 NA intron (NM_001282923, intron 1 of 22) intron (NM_001282923, intron 1 of 22) 12457 NM_001282923 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 135.5-37 chr15 51476861 51477346 + 0.5 NA intron (NM_001174116, intron 26 of 42) intron (NM_001174116, intron 26 of 42) 99857 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 157.5-82 chr5 20081129 20081525 + 0.5 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -93127 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 153.75-11 chr10 8920661 8921134 + 0.5 NA Intergenic Intergenic 22908 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 129.25-39 chr2 16864774 16865110 + 0.5 NA Intergenic Intergenic -199108 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 120-36 chr15 73393610 73394028 + 0.5 NA Intergenic Intergenic -24861 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 118-55 chr5 59727499 59727867 + 0.5 NA intron (NM_001165899, intron 3 of 16) MIRb|SINE|MIR -23980 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 122-41 chr2 147117961 147118436 + 0.5 NA Intergenic LTR78B|LTR|ERV1 531141 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 126.5-80 chr4 64638739 64639176 + 0.5 NA Intergenic Intergenic -229497 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 124.25-40 chr17 70928736 70929199 + 0.5 NA Intergenic Intergenic 273212 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 156.25-70 chr8 114318950 114319397 + 0.5 NA Intergenic AluJr|SINE|Alu -882234 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 125.25-23 chr14 88681823 88682176 + 0.5 NA exon (NM_183387, exon 21 of 43) exon (NM_183387, exon 21 of 43) 87579 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 151.5-6 chr1 156297754 156298318 + 0.5 NA TTS (NM_001004319) TTS (NM_001004319) 1601 NM_001004319 391104 Hs.532378 NM_001004319 ENSG00000189030 VHLL VHLP|VLP VHL like protein-coding 145-34 chr2 65512580 65512946 + 0.5 NA Intergenic Intergenic -80164 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 175-31 chr2 159760972 159761540 + 0.5 NA intron (NM_001282805, intron 9 of 11) AluSq|SINE|Alu 27292 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 123.75-41 chr14 69750402 69750807 + 0.5 NA Intergenic Intergenic -16538 NM_001320214 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 147.75-58 chr4 116664852 116665409 + 0.5 NA Intergenic MER61-int|LTR|ERV1 365405 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 152.75-42 chr3 20549958 20550449 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 207735 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 143-46 chr3 1779401 1779792 + 0.5 NA Intergenic MIR3|SINE|MIR -319207 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 116.75-62 chr5 110200423 110200878 + 0.5 NA Intergenic Intergenic 313265 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 130.75-31 chr18 9369798 9370155 + 0.5 NA intron (NM_020648, intron 3 of 4) L1MA8|LINE|L1 35203 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 131.75-76 chr7 23253012 23253453 + 0.5 NA intron (NM_001005340, intron 1 of 10) intron (NM_001005340, intron 1 of 10) 6457 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 132.75-19 chr10 63361062 63361397 + 0.5 NA intron (NM_001322258, intron 2 of 24) AluSq2|SINE|Alu 11819 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 114-27 chr12 132466911 132467238 + 0.5 NA Intergenic Intergenic -23077 NM_001142641 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 126.5-120 chr8 126177658 126178033 + 0.5 NA Intergenic MER58A|DNA|hAT-Charlie -147650 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 130.75-15 chr12 26866763 26867119 + 0.5 NA Intergenic Intergenic -33747 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 144.75-20 chr11 103064278 103064722 + 0.5 NA intron (NM_001318740, intron 5 of 6) intron (NM_001318740, intron 5 of 6) 27660 NM_032299 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 230.75-17 chr4 95170089 95170890 + 0.5 NA intron (NM_003728, intron 14 of 15) intron (NM_003728, intron 14 of 15) 78998 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 150.25-24 chr14 48080772 48081209 + 0.5 NA Intergenic MER61E|LTR|ERV1 -285976 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 182.25-33 chr22 41699584 41699974 + 0.5 NA intron (NM_152513, intron 1 of 30) CpG 276 NM_152513 150365 Hs.116419 NM_152513 ENSG00000167077 MEI1 HYDM3|SPATA38 meiotic double-stranded break formation protein 1 protein-coding 158-55 chr6 5872809 5873201 + 0.5 NA Intergenic Intergenic 131039 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 147.5-61 chr3 152928116 152928553 + 0.5 NA Intergenic Intergenic 93203 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 114.5-32 chr17 49762198 49762533 + 0.5 NA intron (NM_030802, intron 1 of 7) intron (NM_030802, intron 1 of 7) 1766 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 164.75-34 chr2 53328584 53329046 + 0.5 NA Intergenic Intergenic -438968 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 166 chr1 2021953 2022447 + 0.5 NA intron (NM_000815, intron 1 of 8) intron (NM_000815, intron 1 of 8) 2855 NM_000815 2563 Hs.113882 NM_000815 ENSG00000187730 GABRD EIG10|EJM7|GEFSP5 gamma-aminobutyric acid type A receptor delta subunit protein-coding 134.25-32 chr17 72142045 72142412 + 0.5 NA Intergenic AluSp|SINE|Alu 21208 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 130-39 chr2 127887454 127887954 + 0.5 NA Intergenic Intergenic -1764 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 144-27 chr14 94472666 94473044 + 0.5 NA intron (NM_001284276, intron 1 of 5) L2c|LINE|L2 3342 NM_001042518 327657 Hs.317970 NM_175739 ENSG00000170054 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin family A member 9 protein-coding 113-105 chr9 81089618 81090040 + 0.5 NA Intergenic Intergenic 599706 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 184.5-30 chr15 67508125 67508560 + 0.5 NA intron (NR_040051, intron 2 of 5) intron (NR_040051, intron 2 of 5) 12631 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 210.25-48 chr8 78201474 78202102 + 0.5 NA Intergenic L2c|LINE|L2 -314552 NM_181839 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 164.5-79 chr6 37312157 37312690 + 0.5 NA intron (NR_130108, intron 8 of 12) intron (NR_130108, intron 8 of 12) -41560 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 112.75-31 chr14 20692391 20692745 + 0.5 NA intron (NM_194431, intron 1 of 1) MER1B|DNA|hAT-Charlie 3804 NM_001097577 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 130.5-6 chr1 165378992 165379329 + 0.5 NA Intergenic Intergenic -22445 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 117.75-83 chr9 117996355 117996782 + 0.5 NA Intergenic Intergenic 292165 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 136.5-80 chr4 46499502 46499881 + 0.5 NA Intergenic Intergenic -109563 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 148.75-15 chr13 73259086 73259550 + 0.5 NA Intergenic L2b|LINE|L2 200313 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 191.25-9 chr10 41873769 41874449 + 0.5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 493936 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 116.25-14 chr11 41991837 41992163 + 0.5 NA Intergenic MER6A|DNA|TcMar-Tigger 93458 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 141.25 chr1 81069935 81070285 + 0.5 NA Intergenic L2|LINE|L2 -236082 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 114.5-54 chr2 116328007 116328344 + 0.5 NA Intergenic Intergenic 984360 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 120.25-18 chr12 744276 744615 + 0.5 NA Intergenic AluJo|SINE|Alu -8134 NM_018979 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 126-33 chr16 23176145 23176499 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -6423 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 130.75-67 chr6 103842273 103842635 + 0.5 NA Intergenic Penelope1_Vert|LINE|Penelope 1017092 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 114-13 chr10 80749012 80749359 + 0.5 NA Intergenic Intergenic 99388 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 134.25-52 chr22 41803413 41803794 + 0.5 NA intron (NM_024821, intron 1 of 6) AluSz|SINE|Alu 2924 NM_024821 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 135.5-95 chr7 24490231 24490584 + 0.5 NA Intergenic L1MC5|LINE|L1 -83045 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 123.5-80 chr4 103594361 103594802 + 0.5 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 125404 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 120.25-14 chr11 838678 839050 + 0.5 NA TTS (NM_001039490) TTS (NM_001039490) 3665 NM_021128 5441 Hs.441072 NM_021128 ENSG00000177700 POLR2L RBP10|RPABC5|RPB10|RPB10beta|RPB7.6|hRPB7.6 RNA polymerase II subunit L protein-coding 163.75-7 chr1 148385568 148386168 + 0.5 NA Intergenic U1|snRNA|snRNA -2414 NR_106967 102466225 NR_106967 ENSG00000278596 MIR6077 MIR6077-1|MIR6077-2|hsa-mir-6077|hsa-mir-6077-1|hsa-mir-6077-2 microRNA 6077 ncRNA 115.75-90 chr7 75649427 75649863 + 0.5 NA intron (NM_005338, intron 1 of 30) MER5B|DNA|hAT-Charlie 89296 NM_001243198 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 120.5-41 chr17 80438579 80438923 + 0.5 NA TTS (NR_148044) TTS (NR_148044) 19333 NR_039883 100616359 NR_039883 ENSG00000264961 MIR4730 - microRNA 4730 ncRNA 113.5-33 chr14 43039488 43039895 + 0.5 NA Intergenic L1ME2|LINE|L1 1432835 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 156.25-42 chr20 57633300 57633613 + 0.5 NA Intergenic L1MB7|LINE|L1 -13030 NM_001160417 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 166.25-25 chr2 16270033 16270652 + 0.5 NA Intergenic Intergenic 219915 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 157.75-38 chr2 11533756 11534123 + 0.5 NA promoter-TSS (NM_014668) promoter-TSS (NM_014668) -106 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 134-6 chr1 85436150 85436601 + 0.5 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 28784 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 113.75-7 chr1 82401423 82401870 + 0.5 NA Intergenic Intergenic -501537 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 116.75-64 chr5 170840840 170841075 + 0.5 NA Intergenic AluJb|SINE|Alu -21061 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 191.25-17 chr11 132929914 132930352 + 0.5 NA intron (NM_001319104, intron 1 of 6) AluJb|SINE|Alu 13504 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 125.75-54 chr4 29809484 29809803 + 0.5 NA Intergenic Intergenic 595351 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 125.5-30 chr11 131775343 131775729 + 0.5 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -111980 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 144.75-80 chr7 53220126 53220474 + 0.5 NA Intergenic Intergenic 184667 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 114-47 chr2 61777475 61777878 + 0.5 NA Intergenic L1MD2|LINE|L1 76384 NR_037710 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 179.5-63 chr3 53895057 53895618 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -3478 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 180-60 chr6 87711779 87712448 + 0.5 NA Intergenic Intergenic -9880 NM_018064 55122 Hs.485915 NM_018064 ENSG00000135334 AKIRIN2 C6orf166|FBI1|dJ486L4.2 akirin 2 protein-coding 117.5-7 chr10 29945799 29946150 + 0.5 NA Intergenic L2|LINE|L2 113612 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 169-9 chr11 68287654 68288132 + 0.5 NA Intergenic AluSz|SINE|Alu -15920 NM_001300913 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 125-3 chr1 55332880 55333205 + 0.5 NA Intergenic Intergenic 107401 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 125.25-40 chr2 95003242 95003658 + 0.5 NA Intergenic Intergenic -22205 NM_022440 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 157-43 chr4 39006872 39007375 + 0.5 NA intron (NM_001303228, intron 1 of 6) L1MEd|LINE|L1 25286 NM_024943 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 120.75-96 chr8 86923689 86924167 + 0.5 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 57513 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 116-57 chr5 99964493 99964879 + 0.5 NA Intergenic Tigger13a|DNA|TcMar-Tigger 423568 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 157-27 chr2 64812503 64813115 + 0.5 NA Intergenic L1ME4b|LINE|L1 50822 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 114.25-41 chr17 63216180 63216492 + 0.5 NA intron (NM_025185, intron 6 of 25) AluSz|SINE|Alu 223931 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 174.75 chr1 27599458 27600030 + 0.5 NA intron (NM_001029882, intron 1 of 6) intron (NM_001029882, intron 1 of 6) 3750 NM_001029882 27245 Hs.469280 NM_001029882 ENSG00000126705 AHDC1 MRD25 AT-hook DNA binding motif containing 1 protein-coding 125.75-7 chr1 173055684 173056064 + 0.5 NA Intergenic Intergenic -4911 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 147-44 chr2 223179895 223180380 + 0.5 NA Intergenic HSMAR2|DNA|TcMar-Mariner 128207 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 137.75-65 chr5 2350791 2351175 + 0.5 NA Intergenic THE1C|LTR|ERVL-MaLR -38782 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 136-46 chr3 29701157 29701458 + 0.5 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 232849 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 171.75-49 chr6 51156607 51157081 + 0.5 NA Intergenic L1ME3G|LINE|L1 337973 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 116.25-98 chr9 29343680 29344141 + 0.5 NA Intergenic Intergenic -130309 NM_001354574 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 138.5-40 chr16 9641644 9642025 + 0.5 NA Intergenic Intergenic -186329 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 136.75-95 chr7 78976474 78976948 + 0.5 NA intron (NM_001301128, intron 2 of 20) L1MC3|LINE|L1 -32277 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 116.25-15 chr11 46154704 46155099 + 0.5 NA Intergenic AluSq2|SINE|Alu -17054 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 113.75-10 chr1 109034042 109034316 + 0.5 NA intron (NM_014969, intron 1 of 14) AluSq2|SINE|Alu 8049 NM_001142551 22911 Hs.570055 NM_014969 ENSG00000085433 WDR47 - WD repeat domain 47 protein-coding 125.5-112 chr6 83160224 83160670 + 0.5 NA intron (NM_015018, intron 37 of 38) L2|LINE|L2 32818 NM_001367287 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 123.75-14 chr10 33721357 33721729 + 0.5 NA Intergenic Intergenic 51137 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 137.25-15 chr11 42293033 42293561 + 0.5 NA Intergenic L1PA11|LINE|L1 -39607 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 135.25-100 chr9 119741209 119741697 + 0.5 NA Intergenic L1PA15|LINE|L1 -193607 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 145.5-70 chr4 113514119 113514686 + 0.5 NA intron (NM_001221, intron 10 of 18) AluSq2|SINE|Alu 221563 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 143.25-75 chr8 135073455 135073870 + 0.5 NA Intergenic Intergenic -160469 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 115-78 chr9 4259453 4259761 + 0.5 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 40461 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 140.75-64 chr8 78986660 78987150 + 0.5 NA Intergenic L1MA8|LINE|L1 149376 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 122.75-30 chr17 59269657 59269954 + 0.5 NA intron (NM_182569, intron 7 of 9) AluSx|SINE|Alu 49294 NM_001165993 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 122.25-105 chrX 128409813 128410157 + 0.5 NA Intergenic Intergenic -357582 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 115.75-55 chr22 35196863 35197165 + 0.5 NA intron (NR_126356, intron 1 of 5) intron (NR_126356, intron 1 of 5) 34042 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 151.75-59 chr4 49153213 49153796 + 0.5 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 166862 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 141.75-70 chr5 142851870 142852306 + 0.5 NA intron (NM_001349547, intron 1 of 21) intron (NM_001349547, intron 1 of 21) 16822 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 129.25-82 chr9 32407289 32407650 + 0.5 NA intron (NM_001278352, intron 4 of 21) intron (NM_001278352, intron 4 of 21) 22826 NM_001362840 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 151.75-69 chr7 17305063 17305468 + 0.5 NA intron (NM_001621, intron 1 of 10) intron (NM_001621, intron 1 of 10) 6613 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 123-28 chr17 60352230 60352513 + 0.5 NA intron (NM_032582, intron 1 of 33) MLT1J|LTR|ERVL-MaLR 39762 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 115.5-78 chr6 5574014 5574416 + 0.5 NA intron (NM_006567, intron 5 of 6) AluSc8|SINE|Alu -116140 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 129-47 chr4 18156082 18156495 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR -134413 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 113.25-21 chr11 83327787 83328129 + 0.5 NA Intergenic MLT2D|LTR|ERVL -41551 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 181.5-70 chr8 25494797 25495346 + 0.5 NA intron (NM_001317906, intron 12 of 13) MLT1B|LTR|ERVL-MaLR 35838 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 168.25-27 chr18 59324836 59325274 + 0.5 NA Intergenic Intergenic -6406 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 141-31 chr17 75480278 75480734 + 0.5 NA intron (NM_001321148, intron 1 of 30) intron (NM_001321148, intron 1 of 30) 3969 NM_001351203 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 118.25-105 chr7 109196308 109196545 + 0.5 NA Intergenic MER47A|DNA|TcMar-Tigger -311839 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 121.75-29 chr16 13575007 13575412 + 0.5 NA Intergenic L1MEc|LINE|L1 -344948 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 115-22 chr12 26103580 26103942 + 0.5 NA Intergenic Intergenic 21276 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 169.25-54 chr8 108293158 108293662 + 0.5 NA Intergenic Intergenic -44693 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 174.25-33 chr2 71812832 71813295 + 0.5 NA Intergenic Intergenic 334799 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 117.25-92 chr8 99656650 99657004 + 0.5 NA intron (NM_017890, intron 34 of 61) intron (NM_017890, intron 34 of 61) -119966 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 141-9 chr10 37932426 37932765 + 0.5 NA Intergenic AluJb|SINE|Alu 43385 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 126.25-86 chr8 26341816 26342264 + 0.5 NA intron (NM_001177591, intron 3 of 9) intron (NM_001177591, intron 3 of 9) 40913 NR_144550 157489 Hs.586388 NR_144550 ENSG00000228451 SDAD1P1 - SDA1 domain containing 1 pseudogene 1 pseudo 130.75-5 chr1 155537171 155537656 + 0.5 NA intron (NM_018489, intron 1 of 27) MIRb|SINE|MIR -24629 NR_147963 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 118.75-74 chr3 194069346 194069586 + 0.5 NA promoter-TSS (NR_136181) promoter-TSS (NR_136181) 63 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 143.5-83 chr5 38120328 38120776 + 0.5 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) -27928 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 145.25-69 chr6 66310259 66310717 + 0.5 NA Intergenic Intergenic 522609 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 116.75-60 chr5 73971712 73972075 + 0.5 NA Intergenic Intergenic 158347 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 155.75-39 chr3 153674799 153675173 + 0.5 NA intron (NR_146713, intron 2 of 6) intron (NR_146713, intron 2 of 6) 87540 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 164.25-20 chr16 58369280 58369877 + 0.5 NA Intergenic AluJb|SINE|Alu -22893 NM_001126129 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 120.75-60 chr22 26391101 26391388 + 0.5 NA Intergenic Intergenic -38016 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 150-18 chr11 70796502 70797050 + 0.5 NA intron (NM_012309, intron 13 of 24) LTR73|LTR|ERV1 -66014 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 156.75-79 chr5 92187124 92187733 + 0.5 NA Intergenic Intergenic -804111 NR_138072 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 167.25-47 chr3 54182881 54183472 + 0.5 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 60624 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 119.5-46 chr16 10305485 10305832 + 0.5 NA Intergenic AluSq2|SINE|Alu -80403 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 146.25-31 chr17 18149846 18150240 + 0.5 NA intron (NM_016239, intron 34 of 64) intron (NM_016239, intron 34 of 64) -33785 NM_017758 54890 Hs.744130 NM_017758 ENSG00000091542 ALKBH5 ABH5|OFOXD|OFOXD1 alkB homolog 5, RNA demethylase protein-coding 133.25-91 chr9 117831132 117831462 + 0.5 NA Intergenic Intergenic 126894 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 130-19 chr14 46457223 46457676 + 0.5 NA intron (NR_102701, intron 5 of 5) L1ME2|LINE|L1 -13910 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 116.25-59 chr3 159113674 159114109 + 0.5 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 44572 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 120-9 chr1 146020768 146021149 + 0.5 NA intron (NM_213653, intron 1 of 3) intron (NM_213653, intron 1 of 3) 777 NM_001316767 148738 Hs.632436 NM_145277 ENSG00000168509 HJV HFE2|HFE2A|JH|RGMC hemojuvelin BMP co-receptor protein-coding 117.25-29 chr14 71223519 71223963 + 0.5 NA Intergenic MLT1I|LTR|ERVL-MaLR -96735 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 119.75-5 chr10 9592302 9592632 + 0.5 NA Intergenic L1ME1|LINE|L1 -296874 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 131-33 chr20 945701 946105 + 0.5 NA Intergenic L1ME3G|LINE|L1 -29569 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 127-81 chr6 40261826 40262331 + 0.5 NA Intergenic Charlie7a|DNA|hAT-Charlie 93928 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 131.75-34 chr17 61349528 61349943 + 0.5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 17969 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 142.25-13 chr11 83877234 83877620 + 0.5 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -195002 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 135.25-48 chr2 108235473 108235818 + 0.5 NA Intergenic Intergenic -4323 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 122.5-105 chr9 118516038 118516401 + 0.5 NA Intergenic Intergenic -163452 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 159.75-3 chr1 57359478 57359986 + 0.5 NA intron (NM_001353980, intron 4 of 5) L1MA8|LINE|L1 63380 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 170-17 chr19 21019588 21020084 + 0.5 NA promoter-TSS (NM_025189) promoter-TSS (NM_025189) -821 NM_001172671 80264 Hs.729202 NM_025189 ENSG00000118620 ZNF430 - zinc finger protein 430 protein-coding 133.75-49 chr20 34389146 34389639 + 0.5 NA intron (NM_001257137, intron 2 of 25) MER8|DNA|TcMar-Tigger 26119 NM_001257138 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 150.25-72 chr8 77545222 77545582 + 0.5 NA Intergenic L1PA16|LINE|L1 94705 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 118.5-69 chr3 12528812 12529282 + 0.5 NA intron (NM_025265, intron 9 of 11) intron (NM_025265, intron 9 of 11) 16417 NM_001195279 100129480 Hs.572974 NM_001195279 ENSG00000225526 MKRN2OS C3orf83|MKRN2-AS1 MKRN2 opposite strand protein-coding 116.5 chr1 23528582 23528991 + 0.5 NA TTS (NR_110799) TTS (NR_110799) 2447 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 113-75 chr5 20205427 20205778 + 0.5 NA intron (NM_001291956, intron 2 of 14) L1MA4|LINE|L1 -99949 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 141.25-75 chr8 141293038 141293548 + 0.5 NA Intergenic AluSx3|SINE|Alu -38664 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 159.25-64 chr7 34129182 34129567 + 0.5 NA intron (NM_133468, intron 14 of 15) AluSx3|SINE|Alu 223835 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 156-19 chr11 94616265 94616661 + 0.5 NA intron (NM_152431, intron 15 of 19) intron (NM_152431, intron 15 of 19) 49095 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 122-25 chr15 69708167 69708531 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 116149 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 127-24 chr12 32654667 32654965 + 0.5 NA Intergenic L1MC4|LINE|L1 -24384 NM_001278463 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 121.5-80 chr3 63709368 63709646 + 0.5 NA Intergenic MIR|SINE|MIR 56832 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 117.25-89 chr8 27900312 27900682 + 0.5 NA intron (NM_173833, intron 7 of 8) intron (NM_173833, intron 7 of 8) -14381 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 156.25-51 chr3 51348486 51348931 + 0.5 NA intron (NM_004947, intron 38 of 52) intron (NM_004947, intron 38 of 52) -36583 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 115.75-40 chr19 39326981 39327347 + 0.5 NA Intergenic Intergenic 8879 NM_004877 9535 Hs.5210 NM_004877 ENSG00000130755 GMFG GMF-GAMMA glia maturation factor gamma protein-coding 115.75-33 chr16 74053846 74054160 + 0.5 NA Intergenic Intergenic 161518 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 150.75-51 chr3 132848788 132849113 + 0.5 NA intron (NR_002811, intron 9 of 10) (GA)n|Simple_repeat|Simple_repeat -126491 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 175.5-17 chr12 7673260 7673783 + 0.5 NA Intergenic AluSz|SINE|Alu -2922 NM_001304566 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 136.75-40 chr18 7962927 7963259 + 0.5 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 395777 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 118-34 chr17 76441974 76442342 + 0.5 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 10994 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 135.25-97 chr9 25151459 25151991 + 0.5 NA Intergenic HAL1M8|LINE|L1 527133 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 170.25-62 chr8 9096129 9096616 + 0.5 NA intron (NM_001354638, intron 7 of 7) intron (NM_001354638, intron 7 of 7) -37742 NR_145772 109616996 NR_145772 SNORD3I - small nucleolar RNA, C/D box 3I snoRNA 124.25-82 chr8 136926435 136926879 + 0.5 NA Intergenic Intergenic 395859 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 134.75-2 chr1 34576832 34577120 + 0.5 NA Intergenic L1MA8|LINE|L1 92718 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 135.75-21 chr11 39412310 39412774 + 0.5 NA Intergenic L1MC1|LINE|L1 763684 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 164.25-2 chr1 10256399 10256888 + 0.5 NA intron (NM_001365953, intron 3 of 20) intron (NM_001365953, intron 3 of 20) 25879 NM_001365953 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 139-26 chr18 33711871 33712192 + 0.5 NA intron (NM_030632, intron 8 of 11) intron (NM_030632, intron 8 of 11) 133812 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 116-65 chr7 7648132 7648526 + 0.5 NA intron (NM_002947, intron 4 of 7) intron (NM_002947, intron 4 of 7) 7577 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 138.75 chr1 41164049 41164433 + 0.5 NA intron (NM_001172218, intron 2 of 15) L2|LINE|L2 -1224 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 137.75-46 chr2 127037166 127037512 + 0.5 NA Intergenic AluSz6|SINE|Alu 44726 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 117.25-82 chr6 105375395 105375845 + 0.5 NA intron (NM_002726, intron 4 of 14) intron (NM_002726, intron 4 of 14) 27462 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 113.5-64 chr2 195311530 195311923 + 0.5 NA Intergenic Intergenic -345232 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 158.25-43 chr4 157906443 157906999 + 0.5 NA Intergenic L2a|LINE|L2 -264031 NR_147407 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 140.75-55 chr6 75829261 75829760 + 0.5 NA intron (NM_001300899, intron 4 of 32) intron (NM_001300899, intron 4 of 32) 80271 NM_001368865 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 175.5-35 chr17 54099392 54099807 + 0.5 NA Intergenic L2a|LINE|L2 276672 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 142.75-93 chr9 91079181 91079560 + 0.5 NA Intergenic AluSz|SINE|Alu -4238 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 116.25-10 chr10 51468620 51469004 + 0.5 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 169239 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 132-19 chr14 49878965 49879475 + 0.5 NA Intergenic AluSz|SINE|Alu -13862 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 146.25-75 chr8 127512643 127513207 + 0.5 NA Intergenic Intergenic -30786 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 122.5-51 chr2 122481862 122482253 + 0.5 NA Intergenic Intergenic 591424 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 125.5-25 chr11 31032946 31033388 + 0.5 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -40481 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 131-84 chr9 131821404 131821857 + 0.5 NA Intergenic Intergenic -81686 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 132.5-97 chr5 168507780 168508249 + 0.5 NA intron (NM_002887, intron 11 of 14) AluJb|SINE|Alu -21291 NM_001355274 345630 Hs.166262 NM_001355274 ENSG00000188573 FBLL1 - fibrillarin like 1 protein-coding 119.75-31 chr16 14120421 14120803 + 0.5 NA intron (NM_001365418, intron 3 of 5) L1ME3Cz|LINE|L1 49293 NM_001365412 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 150.25-46 chr3 13551738 13552320 + 0.5 NA intron (NM_001004019, intron 1 of 17) AluJr|SINE|Alu 2904 NM_001004019 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 123-27 chr17 59865255 59865660 + 0.5 NA intron (NM_001193611, intron 5 of 6) AluSz|SINE|Alu 24191 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 127.5-53 chr18 64174170 64174524 + 0.5 NA intron (NR_033881, intron 2 of 9) MIRc|SINE|MIR -25321 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 117.25-41 chr2 19595730 19596192 + 0.5 NA Intergenic Intergenic -237338 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 119.75-46 chr2 124501411 124501752 + 0.5 NA intron (NM_001367498, intron 7 of 23) intron (NM_001367498, intron 7 of 23) 476294 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 122.5-100 chr9 26317119 26317484 + 0.5 NA Intergenic L2c|LINE|L2 250626 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 155.5-24 chr11 123817483 123817917 + 0.5 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -11351 NM_001005325 390261 Hs.557924 NM_001005325 ENSG00000196099 OR6M1 OR11-271 olfactory receptor family 6 subfamily M member 1 protein-coding 126.75-36 chr18 1109143 1109524 + 0.5 NA Intergenic Intergenic -181340 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 122.25-55 chr2 159471651 159472126 + 0.5 NA intron (NM_001329858, intron 3 of 36) intron (NM_001329858, intron 3 of 36) -143406 NR_110587 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 118.75-13 chr10 119688745 119689151 + 0.5 NA Intergenic Intergenic -37099 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 137.5-71 chr20 51548729 51549142 + 0.5 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) -6216 NM_173091 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 190.5-3 chr1 91816217 91816711 + 0.5 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 69687 NM_003243 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 139.25-38 chr16 13337440 13337978 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR 436111 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 173-34 chr22 25070115 25070520 + 0.5 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 42343 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 129.75-77 chr8 28378305 28378717 + 0.5 NA intron (NM_018660, intron 1 of 9) AluJo|SINE|Alu 7949 NM_018660 55893 Hs.435535 NM_018660 ENSG00000186918 ZNF395 HDBP-2|HDBP2|HDRF-2|PBF|PRF-1|PRF1|Si-1-8-14 zinc finger protein 395 protein-coding 127-45 chr2 46433001 46433441 + 0.5 NA intron (NR_103805, intron 1 of 3) intron (NR_103805, intron 1 of 3) 4031 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 125.5-81 chr3 74856786 74857208 + 0.5 NA Intergenic Intergenic -335857 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 142-59 chr5 155923190 155923562 + 0.5 NA Intergenic Intergenic -403381 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 132.75-33 chr13 101664446 101664728 + 0.5 NA intron (NM_001271754, intron 6 of 10) L1MEg|LINE|L1 174635 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 164.25-68 chr9 89202473 89202970 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR -23903 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 122.5-75 chr5 121352141 121352515 + 0.5 NA Intergenic Intergenic 29778 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 116.75-49 chr3 43697354 43697690 + 0.5 NA intron (NM_001365649, intron 1 of 6) intron (NM_001365649, intron 1 of 6) -5928 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 130.25-47 chr2 72882297 72882733 + 0.5 NA Intergenic AluSx3|SINE|Alu -4893 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 115.25-77 chr5 58948501 58948951 + 0.5 NA Intergenic Intergenic 51172 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 113.75-3 chr1 42837329 42837672 + 0.5 NA intron (NM_001017922, intron 7 of 11) intron (NM_001017922, intron 7 of 11) -9073 NM_015911 51058 Hs.20879 NM_015911 ENSG00000164011 ZNF691 Zfp691 zinc finger protein 691 protein-coding 113-83 chr5 111313978 111314323 + 0.5 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 89766 NM_001323377 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 150-14 chr10 51270448 51270868 + 0.5 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -28915 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 114-85 chr7 55128150 55128392 + 0.5 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 18432 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 114.5-58 chr2 183632209 183632493 + 0.5 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat 507908 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 148.5-86 chr5 174299309 174299855 + 0.5 NA Intergenic AluSx3|SINE|Alu -36772 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 133.5-24 chr13 57572486 57572936 + 0.5 NA Intergenic L1PA16|LINE|L1 -59033 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 114-86 chr7 87001736 87002042 + 0.5 NA intron (NM_001142749, intron 1 of 21) LTR81C|LTR|Gypsy -35990 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 115.75-35 chr17 60471979 60472323 + 0.5 NA intron (NM_006380, intron 4 of 12) AluSx1|SINE|Alu 49662 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 123.75-76 chr3 116540624 116540994 + 0.5 NA Intergenic L1PA15|LINE|L1 -11664 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 119.5-127 chr9 99020418 99020831 + 0.5 NA intron (NM_001855, intron 12 of 41) MIRc|SINE|MIR 76717 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 126.25-27 chr12 124065455 124065928 + 0.5 NA intron (NM_001347902, intron 2 of 4) MIR|SINE|MIR 92476 NM_001347902 100533183 Hs.524828 NM_001204299 ENSG00000178882 ZNF664-RFLNA - ZNF664-RFLNA readthrough protein-coding 123-43 chr4 106533661 106533995 + 0.5 NA Intergenic AluSz6|SINE|Alu 100204 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 149.75-27 chr2 83418918 83419427 + 0.5 NA Intergenic L1PB4|LINE|L1 -103642 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 198.5-44 chr5 148488974 148489503 + 0.5 NA intron (NM_001040173, intron 5 of 6) MIRb|SINE|MIR 105280 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 131-68 chr7 29554807 29555221 + 0.5 NA Intergenic LTR87|LTR|ERVL? -8821 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 140-35 chr2 138320400 138320761 + 0.5 NA Intergenic Intergenic -181190 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 169-45 chr5 8901402 8901815 + 0.5 NA Intergenic Intergenic 61876 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 122.75-47 chr2 103273326 103273701 + 0.5 NA Intergenic L1MEg|LINE|L1 -289084 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 149.75-18 chr15 27075080 27075510 + 0.5 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 86024 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 194.25-2 chr1 90786646 90787182 + 0.5 NA intron (NR_135038, intron 2 of 2) L2c|LINE|L2 49247 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 126.75-96 chr9 78852606 78852926 + 0.5 NA Intergenic Intergenic 292900 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 122.75-5 chr1 107211294 107211762 + 0.5 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 63459 NM_001113226 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 129.25-71 chr7 145437354 145437800 + 0.5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -601524 NM_001350882 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 113.25-86 chr3 111790875 111791271 + 0.5 NA intron (NM_001185106, intron 4 of 4) L1ME4a|LINE|L1 58577 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 130-6 chr10 86764217 86764552 + 0.5 NA intron (NM_004329, intron 1 of 12) intron (NM_004329, intron 1 of 12) 7745 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 137.25-50 chr3 4982020 4982485 + 0.5 NA intron (NM_003670, intron 4 of 4) intron (NM_003670, intron 4 of 4) -2291 NR_037903 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 117.25-97 chr9 5198202 5198597 + 0.5 NA Intergenic L1M4|LINE|L1 -12760 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 117.75-21 chr13 113580309 113580692 + 0.5 NA Intergenic L2c|LINE|L2 -4188 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 127.75-58 chr3 192737932 192738230 + 0.5 NA Intergenic Intergenic -10540 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 121.25-51 chr4 97879494 97879830 + 0.5 NA intron (NM_174952, intron 8 of 10) THE1B|LTR|ERVL-MaLR 263814 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 119.25-56 chr2 183472341 183472667 + 0.5 NA Intergenic L1MA3|LINE|L1 348061 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 119-71 chr8 61291127 61291543 + 0.5 NA intron (NM_173519, intron 1 of 5) intron (NM_173519, intron 1 of 5) 3365 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 122.5-81 chr6 46789698 46790079 + 0.5 NA Intergenic Intergenic -3501 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 125.5-125 chr8 117932686 117933150 + 0.5 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -12005 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 138-69 chr6 123779504 123780036 + 0.5 NA Intergenic Intergenic -24076 NM_153355 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 152-3 chr1 77573283 77573766 + 0.5 NA intron (NM_015534, intron 12 of 14) L2b|LINE|L2 109134 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 126.5-70 chr3 71322860 71323363 + 0.5 NA intron (NM_001349340, intron 3 of 19) AluSg|SINE|Alu -18340 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 133.5-122 chr8 136516482 136516911 + 0.5 NA Intergenic L1ME1|LINE|L1 -14102 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 122.25-31 chr15 79419922 79420393 + 0.5 NA Intergenic L1MEi|LINE|L1 -12359 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 131.75-15 chr11 111027953 111028255 + 0.5 NA Intergenic L1PB3|LINE|L1 69214 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 168-27 chr14 32044959 32045331 + 0.5 NA Intergenic Intergenic 31554 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 117.75-69 chr5 162878729 162878994 + 0.5 NA Intergenic LOR1-int|LTR|ERV1 -558710 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 117.5-67 chr4 31069673 31069980 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -101318 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 135.5-47 chr19 37458147 37458502 + 0.5 NA intron (NM_001330482, intron 2 of 4) intron (NM_001330482, intron 2 of 4) 9120 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 124.75-55 chr21 27071427 27071756 + 0.5 NA Intergenic L2c|LINE|L2 -104503 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 146.25-70 chr8 35839315 35839789 + 0.5 NA Intergenic MIR|SINE|MIR -129232 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 179.75-16 chr15 38410355 38410958 + 0.5 NA Intergenic L2|LINE|L2 -43471 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 132.75-26 chr11 85745030 85745458 + 0.5 NA intron (NM_001365826, intron 4 of 18) MIRb|SINE|MIR 12825 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 150.75-78 chr9 74000219 74000602 + 0.5 NA Intergenic Charlie1b|DNA|hAT-Charlie -371121 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 138.75-9 chr10 24999654 25000185 + 0.5 NA intron (NM_145010, intron 1 of 5) L1M5|LINE|L1 16239 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 128-33 chr22 40875728 40876100 + 0.5 NA intron (NM_022098, intron 2 of 9) AluSz6|SINE|Alu -13801 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 131.25-62 chr3 183284051 183284385 + 0.5 NA intron (NM_015078, intron 14 of 29) intron (NM_015078, intron 14 of 29) 30965 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 124-69 chr7 17788773 17789064 + 0.5 NA Intergenic MER68|LTR|ERVL 151576 NM_001350863 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 119.75-9 chr10 33943896 33944202 + 0.5 NA Intergenic Intergenic -171369 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 118.25-113 chr8 121740601 121740982 + 0.5 NA Intergenic Intergenic -99351 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 112.75-22 chr11 84357131 84357505 + 0.5 NA intron (NM_001142699, intron 7 of 27) MIRb|SINE|MIR -39979 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 123.25-28 chr15 87325196 87325511 + 0.5 NA Intergenic Intergenic -251576 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 126.5-47 chr2 44688587 44688907 + 0.5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 250141 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 125.75-57 chr5 19452128 19452595 + 0.5 NA Intergenic L1M5|LINE|L1 433911 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 134.25-63 chr4 134813961 134814376 + 0.5 NA Intergenic Intergenic 309391 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 115.25-69 chr4 76489346 76489779 + 0.5 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 54333 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 154.5-75 chr8 130191497 130191845 + 0.5 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 104862 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 186.25-41 chr4 104978123 104978709 + 0.5 NA Intergenic L2c|LINE|L2 -167459 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 148-62 chr7 103498906 103499465 + 0.5 NA intron (NM_005045, intron 53 of 64) intron (NM_005045, intron 53 of 64) -52978 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 132.75-12 chr1 221152781 221153112 + 0.5 NA Intergenic Intergenic 183350 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 136-39 chr2 217733489 217733966 + 0.5 NA intron (NR_026597, intron 1 of 12) LTR16D|LTR|ERVL 22866 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 138.25-37 chr18 71869180 71869562 + 0.5 NA Intergenic Intergenic -87145 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 118.75-60 chr20 38695852 38696109 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR -28506 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 114.25-33 chr15 55136052 55136305 + 0.5 NA Intergenic L1PA7|LINE|L1 60763 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 151.75-11 chr11 34361182 34361646 + 0.5 NA Intergenic L2a|LINE|L2 -3404 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 142.5-93 chr8 102899093 102899660 + 0.5 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) 35105 NR_126339 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 152.25-29 chr18 34110840 34111308 + 0.5 NA intron (NM_001353232, intron 2 of 9) L1MA4|LINE|L1 -62462 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 127.25-71 chr4 99385713 99386125 + 0.5 NA Intergenic L1MEc|LINE|L1 -33173 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 151.75-45 chr2 104195965 104196362 + 0.5 NA Intergenic Intergenic 212169 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 119.25-78 chr5 148400451 148400903 + 0.5 NA intron (NM_001271723, intron 3 of 20) MIRc|SINE|MIR 16719 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 150-76 chr8 86292201 86292653 + 0.5 NA Intergenic Intergenic -50120 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 122-51 chr3 177710641 177711008 + 0.5 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -106041 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 141.75-13 chr11 110255897 110256403 + 0.5 NA intron (NM_001260493, intron 7 of 15) intron (NM_001260493, intron 7 of 15) 40562 NM_001260495 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 123-9 chr10 34583822 34584305 + 0.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 231233 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 121.5-27 chr12 114875088 114875437 + 0.5 NA Intergenic AluJo|SINE|Alu -191087 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 158.5-25 chr11 115183161 115183760 + 0.5 NA intron (NM_001098517, intron 7 of 8) intron (NM_001098517, intron 7 of 8) -150117 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 337.25-4 chr2 89838050 89839113 + 0.5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -200674 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 119.5-89 chr4 71934652 71935057 + 0.5 NA Intergenic Intergenic -96950 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 129-12 chr10 111758606 111759052 + 0.5 NA Intergenic Intergenic 424936 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 123.25-72 chr6 54357246 54357618 + 0.5 NA intron (NM_014464, intron 9 of 10) L2a|LINE|L2 48991 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 113-98 chr8 4212151 4212530 + 0.5 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 782574 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 113.75-92 chr6 8933063 8933373 + 0.5 NA Intergenic Intergenic 281009 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 120.5-70 chr3 165607095 165607469 + 0.5 NA Intergenic Intergenic 230141 NR_137636 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 131.5-28 chr15 55402443 55402887 + 0.5 NA intron (NR_037923, intron 8 of 15) intron (NR_037923, intron 8 of 15) 5694 NM_004748 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 173.75-62 chr9 133361979 133362548 + 0.5 NA 3' UTR (NM_033161, exon 6 of 6) 3' UTR (NM_033161, exon 6 of 6) 5713 NM_001278928 6835 Hs.159448 NM_017503 ENSG00000148291 SURF2 SURF-2 surfeit 2 protein-coding 119.25-83 chr6 125575957 125576319 + 0.5 NA Intergenic L1PA16|LINE|L1 -98215 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 119.25-75 chr4 111110795 111111237 + 0.5 NA Intergenic L1M5|LINE|L1 -250369 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 156-63 chr7 113706392 113706762 + 0.5 NA Intergenic L2a|LINE|L2 212432 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 120.5-53 chr20 31073920 31074214 + 0.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -183597 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 132-80 chr9 84497009 84497362 + 0.5 NA Intergenic L1ME1|LINE|L1 -128458 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 165-17 chr12 125471784 125472339 + 0.5 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 145445 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 145.25-58 chr4 96198724 96199136 + 0.5 NA Intergenic Intergenic -111773 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 148.5-99 chr7 26331950 26332439 + 0.5 NA intron (NM_001318199, intron 1 of 6) L1MB8|LINE|L1 -28690 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 123-11 chr10 74987640 74988054 + 0.5 NA intron (NM_001370144, intron 10 of 15) intron (NM_001370144, intron 10 of 15) -33886 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 113.75-20 chr10 72264691 72265132 + 0.5 NA Intergenic Intergenic -9013 NM_019058 54541 Hs.744875 NM_019058 ENSG00000168209 DDIT4 Dig2|REDD-1|REDD1 DNA damage inducible transcript 4 protein-coding 115-6 chr1 170807992 170808351 + 0.5 NA Intergenic Intergenic -127300 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 130.75-79 chrX 70172351 70172623 + 0.5 NA Intergenic L1ME4b|LINE|L1 -4996 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 113.75-12 chr1 171558728 171559150 + 0.5 NA intron (NM_015172, intron 19 of 33) Tigger1|DNA|TcMar-Tigger -60824 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 122.25-81 chr5 94513416 94513791 + 0.5 NA intron (NM_001145678, intron 5 of 20) intron (NM_001145678, intron 5 of 20) 105001 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 132-11 chr10 31272974 31273407 + 0.5 NA Intergenic HAL1|LINE|L1 -45227 NM_001323638 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 127.75-70 chr4 171921042 171921433 + 0.5 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -107630 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 149.75-31 chr2 148876158 148876507 + 0.5 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) 1105 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 126.75-47 chr2 189387495 189387748 + 0.5 NA Intergenic L1ME4b|LINE|L1 -53812 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 120-49 chr2 138529640 138529907 + 0.5 NA intron (NM_001001664, intron 1 of 10) L1MEg1|LINE|L1 28003 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 128.75-49 chr21 35814775 35815243 + 0.5 NA Intergenic Intergenic -71436 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 143.75-86 chr8 127097953 127098359 + 0.5 NA Intergenic Intergenic -15935 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 124.75-37 chr17 61734814 61735272 + 0.5 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 128516 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 138.25-14 chr10 118454323 118454812 + 0.5 NA Intergenic Intergenic 97459 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 122.25-96 chr8 120387129 120387435 + 0.5 NA Intergenic L1PB3|LINE|L1 57868 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 131.75-27 chr13 67771047 67771459 + 0.5 NA Intergenic Intergenic 398866 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 117-55 chr3 86974641 86975083 + 0.5 NA intron (NM_001320494, intron 2 of 3) intron (NM_001320494, intron 2 of 3) 16287 NM_001320494 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 117.25-85 chr7 25209433 25209880 + 0.5 NA Intergenic L1MA9|LINE|L1 18830 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 133.75-18 chr12 51024789 51025198 + 0.5 NA intron (NM_001174125, intron 1 of 15) intron (NM_001174125, intron 1 of 15) 1148 NM_001174129 4891 Hs.505545 NM_000617 ENSG00000110911 SLC11A2 AHMIO1|DCT1|DMT1|NRAMP2 solute carrier family 11 member 2 protein-coding 131.5-16 chr11 47271344 47271654 + 0.5 NA intron (NR_120569, intron 1 of 2) intron (NR_120569, intron 1 of 2) 576 NR_120568 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 128.75-51 chr22 25634522 25634953 + 0.5 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 70062 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 117-11 chr10 47161925 47162281 + 0.5 NA Intergenic L1MD1|LINE|L1 -138094 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 136.75-65 chr3 181811257 181811649 + 0.5 NA Intergenic AluY|SINE|Alu 99528 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 131-14 chr11 40810598 40810941 + 0.5 NA intron (NM_020929, intron 1 of 4) L2a|LINE|L2 -517639 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 118.5-7 chr1 71640128 71640600 + 0.5 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 196648 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 136-31 chr2 20271822 20272261 + 0.5 NA intron (NM_001282790, intron 11 of 18) AluSx1|SINE|Alu -46608 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 125 chr1 5923256 5923599 + 0.5 NA intron (NR_111987, intron 11 of 32) L1MEc|LINE|L1 -60686 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 115-19 chr11 40506849 40507146 + 0.5 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -213867 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 131.25-79 chr6 165355555 165355829 + 0.5 NA intron (NM_006661, intron 19 of 22) L1ME2|LINE|L1 -46087 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 171.5-87 chr7 52073486 52073925 + 0.5 NA Intergenic HAL1|LINE|L1 -680449 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 138-11 chr11 112700879 112701307 + 0.5 NA Intergenic Intergenic -145291 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 124.5-55 chr2 107262906 107263391 + 0.5 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 86377 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 118.75-68 chr3 20053208 20053502 + 0.5 NA intron (NM_003884, intron 1 of 17) AluJb|SINE|Alu 12909 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 151.75-72 chr7 106950454 106950931 + 0.5 NA Intergenic L2a|LINE|L2 85213 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 118.25-54 chr20 19017501 19017799 + 0.5 NA Intergenic Intergenic -187447 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 127.75-9 chr10 35841173 35841608 + 0.5 NA Intergenic L1MCa|LINE|L1 63088 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 161.5-68 chr5 41247930 41248437 + 0.5 NA intron (NM_001115131, intron 1 of 17) L1PA16|LINE|L1 13286 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 118.5-39 chr15 57407223 57407626 + 0.5 NA intron (NM_032866, intron 1 of 18) AluJr4|SINE|Alu 30919 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 127.5-47 chr17 65340853 65341139 + 0.5 NA Intergenic L1PA15|LINE|L1 -116545 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 122.5-3 chr1 62720830 62721272 + 0.5 NA Intergenic Intergenic -32665 NM_001272002 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 117-31 chr19 32027510 32027900 + 0.5 NA intron (NR_110674, intron 1 of 2) intron (NR_110674, intron 1 of 2) 1843 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 130.5-39 chr18 44606162 44606611 + 0.5 NA Intergenic MIRc|SINE|MIR -73687 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 150.75-60 chr6 4417463 4417936 + 0.5 NA Intergenic L1MEg|LINE|L1 -71099 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 139.75-4 chr1 79325261 79325668 + 0.5 NA Intergenic LTR8A|LTR|ERV1 -318734 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 114.75-76 chr5 18271358 18271686 + 0.5 NA Intergenic Intergenic 464248 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 142.25-54 chr5 82957085 82957491 + 0.5 NA Intergenic L1ME3A|LINE|L1 -97452 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 136.5-14 chr10 104813152 104813528 + 0.5 NA intron (NM_014978, intron 1 of 26) L2a|LINE|L2 -147124 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 124.5-88 chr6 22103905 22104310 + 0.5 NA intron (NR_015410, intron 8 of 11) L1MCc|LINE|L1 43086 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 139.75-62 chr5 109637848 109638214 + 0.5 NA Intergenic L1PREC2|LINE|L1 -51335 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 129.25 chr1 93963324 93963805 + 0.5 NA Intergenic Intergenic -53966 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 167.75-61 chr6 117847165 117847704 + 0.5 NA Intergenic L1PA14|LINE|L1 -59830 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 133-10 chr11 30856118 30856518 + 0.5 NA Intergenic Intergenic 136368 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 116.25-65 chr4 72827114 72827438 + 0.5 NA Intergenic Intergenic 242440 NM_173827 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 148.75-21 chr16 8268761 8269159 + 0.5 NA Intergenic AluSx1|SINE|Alu 320878 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 135.75-56 chr20 195858 196387 + 0.5 NA Intergenic L1PA15|LINE|L1 -6411 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 118.75-50 chr2 98333223 98333555 + 0.5 NA Intergenic L1PA5|LINE|L1 -12766 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 157.75-28 chr15 70305403 70305738 + 0.5 NA Intergenic L1MC4|LINE|L1 200358 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 149.75-3 chr1 206806689 206807232 + 0.5 NA intron (NM_153758, intron 2 of 6) THE1C|LTR|ERVL-MaLR -21917 NM_013371 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 118.5-71 chr3 114243481 114243871 + 0.5 NA Intergenic Intergenic -6098 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 120.75-82 chr5 170060772 170061096 + 0.5 NA intron (NR_156756, intron 45 of 52) AluSg|SINE|Alu 32446 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 116-8 chr10 27669118 27669355 + 0.5 NA Intergenic MIR|SINE|MIR -75379 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 130.5-36 chr14 73734563 73735048 + 0.5 NA intron (NM_001367710, intron 3 of 12) MER105|DNA|hAT-Charlie -20421 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 115.5-92 chr7 138811070 138811435 + 0.5 NA Intergenic L1PA4|LINE|L1 -13056 NM_130840 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 120-83 chr7 104027171 104027613 + 0.5 NA Intergenic Charlie1a|DNA|hAT-Charlie -37734 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 168.75-34 chr3 30394379 30394902 + 0.5 NA Intergenic L2|LINE|L2 -124228 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 123-30 chr2 61368784 61369097 + 0.5 NA intron (NM_014709, intron 10 of 79) intron (NM_014709, intron 10 of 79) 48437 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 116.75-76 chr7 80272613 80272937 + 0.5 NA Intergenic Intergenic 101664 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 163.75-20 chr14 45440131 45440502 + 0.5 NA Intergenic Intergenic -187114 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 174.25-50 chr5 155018131 155018479 + 0.5 NA TTS (NM_001099293) TTS (NM_001099293) 4550 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 173.25-51 chr4 93177597 93178115 + 0.5 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -650897 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 147.5-32 chr16 3877302 3877751 + 0.5 NA intron (NM_004380, intron 1 of 30) AluSz|SINE|Alu 2594 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 126.75-70 chr4 124620308 124620650 + 0.5 NA Intergenic Intergenic -62045 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 114-62 chr4 11326737 11327118 + 0.5 NA Intergenic Intergenic -41900 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 160-43 chr7 100387972 100388513 + 0.5 NA intron (NM_178273, intron 2 of 4) intron (NM_178273, intron 2 of 4) 14755 NM_178272 29992 Hs.444407 NM_013439 ENSG00000085514 PILRA FDF03 paired immunoglobin like type 2 receptor alpha protein-coding 122-52 chr3 186804061 186804499 + 0.5 NA intron (NM_181573, intron 2 of 10) intron (NM_181573, intron 2 of 10) 2202 NM_002916 5984 Hs.732098 NM_002916 ENSG00000163918 RFC4 A1|RFC37 replication factor C subunit 4 protein-coding 157.5-29 chr14 64905576 64906193 + 0.5 NA Intergenic Intergenic -8477 NM_001204063 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 128.75-11 chr10 120010967 120011400 + 0.5 NA Intergenic Intergenic 52670 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 126-48 chr2 107183636 107184002 + 0.5 NA intron (NR_049853, intron 2 of 3) (TAA)n|Simple_repeat|Simple_repeat 165706 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 130-68 chr6 10827750 10828100 + 0.5 NA intron (NR_134935, intron 2 of 14) AluJb|SINE|Alu 2952 NM_005906 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 182.75-5 chr12 13879308 13879969 + 0.5 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 100718 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 150.5-48 chr2 129817838 129818388 + 0.5 NA Intergenic Intergenic 59378 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 120.25-78 chr8 140628444 140628793 + 0.5 NA intron (NM_001164623, intron 1 of 17) AluJr|SINE|Alu 7015 NM_001164623 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 160.75-10 chr10 58582194 58582625 + 0.5 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 69537 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 121.25-35 chr2 123353337 123353790 + 0.5 NA Intergenic L1MD1|LINE|L1 -280082 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 130.25-7 chr1 202077087 202077598 + 0.5 NA Intergenic AluSc|SINE|Alu -45575 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2|ETBRLP2 G protein-coupled receptor 37 like 1 protein-coding 135.5-49 chr2 70689824 70690202 + 0.5 NA intron (NM_017482, intron 8 of 12) L1M5|LINE|L1 77702 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 155.25-39 chr20 32545620 32546154 + 0.5 NA intron (NM_001256798, intron 1 of 10) intron (NM_001256798, intron 1 of 10) 35928 NR_110619 101929698 Hs.638392 NR_110619 ENSG00000277301 LOC101929698 - uncharacterized LOC101929698 ncRNA 138.75-59 chr5 18927440 18927929 + 0.5 NA Intergenic Intergenic 958588 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 120.75-84 chr6 36161962 36162281 + 0.5 NA Intergenic MER66A|LTR|ERV1 31608 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 122.75-55 chr3 121852889 121853237 + 0.5 NA intron (NM_001320041, intron 2 of 4) L1MC5a|LINE|L1 17854 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 145.25-74 chr7 18501955 18502459 + 0.5 NA intron (NM_058176, intron 1 of 22) intron (NM_058176, intron 1 of 22) 5945 NM_058176 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 118-29 chr15 69941099 69941481 + 0.5 NA Intergenic Intergenic 106056 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 123.75-68 chr3 46323277 46323678 + 0.5 NA Intergenic Intergenic -30267 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 131.25-37 chr17 61894186 61894573 + 0.5 NA intron (NM_001351695, intron 12 of 24) intron (NM_001351695, intron 12 of 24) -30820 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 129-80 chr8 118472662 118473103 + 0.5 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -148119 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 113.25-55 chr17 75115934 75116215 + 0.5 NA intron (NM_024585, intron 2 of 2) intron (NM_024585, intron 2 of 2) 6105 NM_001304271 79637 Hs.413047 NM_024585 ENSG00000125449 ARMC7 - armadillo repeat containing 7 protein-coding 150-36 chr2 33447921 33448384 + 0.5 NA intron (NM_170672, intron 2 of 18) intron (NM_170672, intron 2 of 18) -9903 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 141.25-53 chr3 161439838 161440322 + 0.5 NA intron (NR_102265, intron 2 of 3) intron (NR_102265, intron 2 of 3) 13653 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 166.25-3 chr1 97045423 97045857 + 0.5 NA Intergenic L2b|LINE|L2 -50283 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 114.5-62 chr20 25371557 25371981 + 0.5 NA intron (NM_001042472, intron 1 of 12) AluSz6|SINE|Alu 19066 NM_001042472 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12 abhydrolase domain containing 12 protein-coding 157.75-2 chr1 8799998 8800593 + 0.5 NA intron (NM_012102, intron 1 of 23) intron (NM_012102, intron 1 of 23) 17345 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 135.25-21 chr12 41657625 41658085 + 0.5 NA Intergenic Intergenic -106334 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 153.25-63 chrX 68001725 68002179 + 0.5 NA Intergenic MER110-int|LTR|ERV1 431543 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 148.5-48 chr2 140286740 140287116 + 0.5 NA intron (NM_018557, intron 84 of 90) intron (NM_018557, intron 84 of 90) 299757 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 115.25-29 chr13 52190747 52191013 + 0.5 NA intron (NR_002816, intron 1 of 8) intron (NR_002816, intron 1 of 8) 3587 NR_051965 100887750 Hs.553878 NR_002816 ENSG00000243406 MRPS31P5 MRPS31P3 mitochondrial ribosomal protein S31 pseudogene 5 pseudo 135.25-90 chr7 85338373 85338643 + 0.5 NA Intergenic L1MEd|LINE|L1 -82614 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 115.75-101 chr9 34829475 34829730 + 0.5 NA TTS (NR_024481) TTS (NR_024481) 8984 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 179.25-17 chr2 11195656 11196239 + 0.5 NA intron (NM_001321643, intron 27 of 32) intron (NM_001321643, intron 27 of 32) 40480 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 113.75-55 chr2 69425510 69425941 + 0.5 NA intron (NM_001002755, intron 2 of 7) AluJr|SINE|Alu 11710 NR_045632 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 120.5-111 chr9 24680928 24681272 + 0.5 NA Intergenic Intergenic -135203 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 137.5-16 chr10 117195848 117196282 + 0.5 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -1424 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 129-22 chr14 71408907 71409208 + 0.5 NA intron (NM_001354285, intron 2 of 24) L1ME3F|LINE|L1 10720 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 113-24 chr14 46220486 46220913 + 0.5 NA intron (NR_102702, intron 3 of 3) L1PA16|LINE|L1 156540 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 154-46 chr3 168399550 168399963 + 0.5 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) 150234 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 119.75-76 chr7 32349936 32350296 + 0.5 NA intron (NM_001322059, intron 1 of 17) (TTC)n|Simple_repeat|Simple_repeat -50788 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 118.75-18 chr11 116494178 116494531 + 0.5 NA Intergenic Intergenic -145068 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 124.75-41 chr19 34120423 34120826 + 0.5 NA Intergenic AluSx1|SINE|Alu -51880 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 145.25-41 chr2 81186002 81186435 + 0.5 NA Intergenic Intergenic 280728 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 123-47 chr5 57134179 57134522 + 0.5 NA Intergenic Intergenic -39598 NM_001331037 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 113.75-39 chr14 67590703 67591118 + 0.5 NA intron (NM_004569, intron 3 of 3) intron (NM_004569, intron 3 of 3) 9358 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 176.75-25 chr2 107456753 107457190 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -72448 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 129.75-25 chr14 35577739 35578117 + 0.5 NA intron (NM_014990, intron 36 of 40) intron (NM_014990, intron 36 of 40) 43764 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 116.5-97 chr6 1584653 1585045 + 0.5 NA Intergenic Intergenic -20682 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 113-16 chr11 113386411 113386824 + 0.5 NA Intergenic Intergenic -1162 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 115.5-67 chr4 87209368 87209669 + 0.5 NA intron (NM_001292006, intron 1 of 9) intron (NM_001292006, intron 1 of 9) 10750 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 173.75-26 chr22 41007229 41007765 + 0.5 NA Intergenic AluSp|SINE|Alu 56119 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 157.75-73 chr8 11209819 11210265 + 0.5 NA Intergenic Intergenic -8209 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 113.5-25 chr12 12748197 12748509 + 0.5 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -16296 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 149.75-5 chr1 214259468 214259945 + 0.5 NA Intergenic L2a|LINE|L2 -21453 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 164.25-45 chr3 96092596 96093011 + 0.5 NA Intergenic L1PA7|LINE|L1 -267161 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 133-72 chrX 140855131 140855654 + 0.5 NA Intergenic Intergenic -70834 NM_004065 1038 Hs.446675 NM_004065 ENSG00000184258 CDR1 CDR|CDR34|CDR62A cerebellar degeneration related protein 1 protein-coding 158.5-83 chr4 137900852 137901229 + 0.5 NA Intergenic Intergenic -187974 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 159.25-23 chr17 30269967 30270309 + 0.5 NA intron (NM_000386, intron 10 of 11) intron (NM_000386, intron 10 of 11) 21806 NM_000386 642 Hs.371914 NM_000386 ENSG00000108578 BLMH BH|BMH bleomycin hydrolase protein-coding 119.25-34 chr17 40072365 40072644 + 0.5 NA intron (NM_199334, intron 1 of 8) intron (NM_199334, intron 1 of 8) 9539 NM_199334 7067 Hs.724 NM_003250 ENSG00000126351 THRA AR7|CHNG6|EAR7|ERB-T-1|ERBA|ERBA1|NR1A1|THRA1|THRA2|c-ERBA-1 thyroid hormone receptor alpha protein-coding 114.25-84 chr5 41808713 41809094 + 0.5 NA intron (NM_001364301, intron 7 of 16) intron (NM_001364301, intron 7 of 16) 34754 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 116.25-93 chr8 109556307 109556755 + 0.5 NA intron (NM_198120, intron 4 of 6) intron (NM_198120, intron 4 of 6) 15905 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 139.5-52 chr20 56609855 56610352 + 0.5 NA Intergenic AluJo|SINE|Alu -19203 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 130.5-24 chr12 2619705 2620110 + 0.5 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 52313 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 118-66 chr8 14299543 14299932 + 0.5 NA intron (NM_001322879, intron 2 of 6) L1ME2|LINE|L1 553773 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 114.75-68 chr4 31057476 31057741 + 0.5 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -113536 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 115.75-7 chr1 168310144 168310446 + 0.5 NA intron (NM_005149, intron 7 of 7) AluSq|SINE|Alu 29418 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box transcription factor 19 protein-coding 129.75-17 chr11 111842778 111843202 + 0.5 NA intron (NM_001352418, intron 8 of 13) AluYa8|SINE|Alu 28291 NM_001352415 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 122.25-25 chr12 24094546 24094969 + 0.5 NA intron (NM_152989, intron 4 of 17) L1M5|LINE|L1 -117664 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 120.5-79 chr4 122611795 122612223 + 0.5 NA TTS (NM_001207006) TTS (NM_001207006) -6974 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 127.25-23 chr12 113883129 113883449 + 0.5 NA intron (NM_001146698, intron 21 of 24) intron (NM_001146698, intron 21 of 24) 83036 NM_001146699 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 113.5-78 chr3 102070323 102070766 + 0.5 NA Intergenic Intergenic -93161 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 143.5-13 chr10 117938384 117938796 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -108231 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 122.25-16 chr11 68150855 68151280 + 0.5 NA Intergenic Intergenic -29676 NM_212469 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 114-79 chr6 129823428 129823748 + 0.5 NA Intergenic Intergenic 37727 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 117.75-54 chr3 78207843 78208214 + 0.5 NA Intergenic MLT1A1|LTR|ERVL-MaLR -159065 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 171.5-35 chr17_KI270729v1_random 144761 145240 + 0.5 NA NA Intergenic NA NA 117.25-50 chr20 53118817 53119185 + 0.5 NA intron (NM_173485, intron 1 of 2) MSTA|LTR|ERVL-MaLR -66282 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 142.75-20 chr10 125052517 125052990 + 0.5 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -19883 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 117.25-21 chr11 92687782 92688047 + 0.5 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 227714 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 183.5-43 chr20 54378090 54378569 + 0.5 NA Intergenic L1MEc|LINE|L1 -97264 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 158.75-28 chr2 14708485 14708897 + 0.5 NA Intergenic Intergenic 75974 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 115.25-70 chr4 84288714 84289028 + 0.5 NA intron (NR_125909, intron 2 of 8) AluSx|SINE|Alu 10298 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 147.25-10 chr12 12761301 12761736 + 0.5 NA intron (NM_001130415, intron 1 of 1) L1ME3G|LINE|L1 -3131 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 124.75-45 chr2 79704207 79704638 + 0.5 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -55063 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 223.5-19 chr11 125246475 125247160 + 0.5 NA intron (NM_022062, intron 2 of 12) intron (NM_022062, intron 2 of 12) 82066 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 116.5-56 chr2 33933112 33933416 + 0.5 NA intron (NR_126403, intron 3 of 5) (CCTC)n|Simple_repeat|Simple_repeat -133962 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 120.75-6 chr10 34052648 34052943 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -280115 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 125.25-86 chr8 124647085 124647389 + 0.5 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 81236 NM_001363294 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 115.5-104 chr9 117801032 117801383 + 0.5 NA Intergenic Intergenic 96804 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 136.75-15 chr10 96796490 96796846 + 0.5 NA Intergenic AluSz|SINE|Alu 32096 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 115.75-63 chr3 142474740 142475056 + 0.5 NA intron (NM_001354579, intron 35 of 45) L1MA8|LINE|L1 -26836 NM_001282859 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 156.75-82 chr6 71429057 71429485 + 0.5 NA intron (NR_121615, intron 1 of 7) MER20|DNA|hAT-Charlie 8244 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 113.75-90 chr5 80517183 80517580 + 0.5 NA intron (NM_205548, intron 3 of 5) MER44B|DNA|TcMar-Tigger 29281 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 119.5-62 chr2 144749380 144749789 + 0.5 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 81617 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 126.5-121 chr8 136144557 136144923 + 0.5 NA Intergenic Intergenic -386058 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 127.5-66 chr2 171742105 171742594 + 0.5 NA intron (NM_001271787, intron 13 of 15) AluJb|SINE|Alu 54594 NM_001320883 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 169.75-62 chr8 101955352 101955826 + 0.5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -28843 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 118.75-86 chr5 117191096 117191558 + 0.5 NA Intergenic Intergenic -224185 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 119.25-80 chr6 54552283 54552670 + 0.5 NA Intergenic L1PREC2|LINE|L1 244035 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 145-62 chr7 121359638 121360100 + 0.5 NA intron (NM_001040020, intron 8 of 9) L1ME4a|LINE|L1 30869 NM_057168 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 157-13 chr11 104731603 104732038 + 0.5 NA Intergenic MIR|SINE|MIR -122518 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 119.25-41 chr19 28007150 28007462 + 0.5 NA intron (NR_146733, intron 4 of 6) intron (NR_146733, intron 4 of 6) -213366 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 164.25-19 chr16 9287081 9287672 + 0.5 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -68212 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 144.25-51 chr3 133137700 133138200 + 0.5 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 13129 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 136-72 chr9 107031425 107031882 + 0.5 NA intron (NR_126029, intron 4 of 4) THE1C|LTR|ERVL-MaLR 71335 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 136-51 chr3 166598362 166598834 + 0.5 NA Intergenic Intergenic -300085 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 120-56 chr21 32625992 32626403 + 0.5 NA Intergenic L1MD1|LINE|L1 -13326 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 154.25-4 chr1 198160453 198160879 + 0.5 NA intron (NM_133494, intron 1 of 9) intron (NM_133494, intron 1 of 9) 3668 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 134.75-40 chr20 21625360 21625722 + 0.5 NA intron (NR_109878, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 55517 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 135.25-78 chr5 106140760 106141088 + 0.5 NA Intergenic Intergenic 870090 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 150.5-28 chr14 76142004 76142534 + 0.5 NA Intergenic AluJb|SINE|Alu -9616 NM_001322029 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 119.25-22 chr13 112882122 112882360 + 0.5 NA 3' UTR (NM_015205, exon 30 of 30) 3' UTR (NM_015205, exon 30 of 30) 86397 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 173.75-28 chr3 97322135 97322658 + 0.5 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -117211 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 119-4 chr1 100272445 100272756 + 0.5 NA intron (NM_003729, intron 4 of 10) MER34C|LTR|ERV1 -6426 NR_110434 100506007 Hs.192268 NR_110434 RTCA-AS1 - RTCA antisense RNA 1 ncRNA 125.75-51 chr3 128776181 128776511 + 0.5 NA intron (NM_004637, intron 1 of 5) AluJb|SINE|Alu 50210 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 132-81 chr9 87156270 87156566 + 0.5 NA intron (NR_161226, intron 1 of 1) MLT2B2|LTR|ERVL 7774 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 123.25-55 chr3 22982253 22982717 + 0.5 NA Intergenic Intergenic 220093 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 183.75-35 chr21 29512507 29513058 + 0.5 NA Intergenic MLT1F|LTR|ERVL-MaLR 16735 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 119-58 chr4 93219231 93219569 + 0.5 NA intron (NM_001286838, intron 5 of 14) intron (NM_001286838, intron 5 of 14) -609353 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 115.25-73 chr4 159892628 159893023 + 0.5 NA Intergenic L1MC3|LINE|L1 -115041 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 151-61 chr6 120042971 120043405 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL 28009 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 117-80 chr7 24802303 24802639 + 0.5 NA intron (NR_104111, intron 21 of 21) intron (NR_104111, intron 21 of 21) -44532 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 120.25-20 chr12 8527601 8528035 + 0.5 NA Intergenic L1PA10|LINE|L1 13087 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 113.5-125 chr8 136952547 136952902 + 0.5 NA Intergenic Intergenic 421926 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 146.5-96 chr9 87383585 87384021 + 0.5 NA Intergenic Intergenic -113425 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 115.25-23 chr12 9669695 9670081 + 0.5 NA intron (NM_001197319, intron 1 of 2) intron (NM_001197319, intron 1 of 2) 175 NR_036693 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 138.25-13 chr10 101752387 101752779 + 0.5 NA Intergenic Intergenic 23531 NM_006119 2253 Hs.57710 NM_006119 ENSG00000107831 FGF8 AIGF|FGF-8|HBGF-8|HH6|KAL6 fibroblast growth factor 8 protein-coding 142.5-69 chr4 133448032 133448479 + 0.5 NA Intergenic L1ME2z|LINE|L1 298961 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 129.75-47 chr20 37501062 37501464 + 0.5 NA Intergenic L1M5|LINE|L1 19040 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 162.75-30 chr17 50712898 50713510 + 0.5 NA Intergenic L2a|LINE|L2 -5290 NM_052855 91369 Hs.463426 NM_052855 ENSG00000154945 ANKRD40 - ankyrin repeat domain 40 protein-coding 155-4 chr1 164661111 164661602 + 0.5 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 101634 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 123.25-7 chr1 201242236 201242626 + 0.5 NA Intergenic L1M5|LINE|L1 -41021 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 134.5-93 chr8 15510082 15510443 + 0.5 NA Intergenic L1M5|LINE|L1 -29825 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 140.5-24 chr14 45970483 45971030 + 0.5 NA Intergenic ERVL-E-int|LTR|ERVL -93403 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 115-61 chr4 181315689 181315936 + 0.5 NA Intergenic Intergenic -50783 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 149.75-14 chr13 77646691 77647139 + 0.5 NA Intergenic MIR3|SINE|MIR 15888 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 182.5-4 chr1 95525439 95525860 + 0.5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 15533 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 173.75-40 chr5 117934412 117934962 + 0.5 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 204326 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 114.25-73 chr4 2791565 2791849 + 0.5 NA Intergenic Intergenic -1378 NM_001122681 6452 Hs.167679 NM_003023 ENSG00000087266 SH3BP2 3BP-2|3BP2|CRBM|CRPM|RES4-23 SH3 domain binding protein 2 protein-coding 131.5-11 chr10 59072842 59073176 + 0.5 NA Intergenic Intergenic 73491 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 159.75-41 chr3 162865896 162866377 + 0.5 NA Intergenic Intergenic 437165 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 135.75-73 chr5 57180001 57180389 + 0.5 NA intron (NM_001331037, intron 2 of 12) AluSx1|SINE|Alu 4747 NM_001127235 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 114.5-66 chr22 34656581 34656890 + 0.5 NA Intergenic MIR|SINE|MIR 341181 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 115-30 chr16 48719908 48720314 + 0.5 NA Intergenic Intergenic -109931 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 149.25-19 chr12 99683552 99684124 + 0.5 NA intron (NM_152788, intron 8 of 25) L1PB1|LINE|L1 36085 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 135-32 chr18 13390327 13390836 + 0.5 NA intron (NM_181482, intron 3 of 5) MER5A1|DNA|hAT-Charlie 36953 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 117.75-44 chr2 238086353 238086708 + 0.5 NA intron (NM_016510, intron 7 of 11) AluJr|SINE|Alu -13810 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 115-36 chr18 13918496 13918843 + 0.5 NA Intergenic L1MA9|LINE|L1 -2962 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 137.75-50 chr22 37711241 37711764 + 0.5 NA intron (NM_001039141, intron 4 of 23) AluSx1|SINE|Alu 14454 NM_001039141 11078 Hs.533030 NM_007032 ENSG00000100106 TRIOBP DFNB28|HRIHFB2122|TAP68|TARA|dJ37E16.4 TRIO and F-actin binding protein protein-coding 173.5-109 chr9 137110435 137110860 + 0.5 NA 3' UTR (NM_013379, exon 13 of 13) 3' UTR (NM_013379, exon 13 of 13) 4086 NM_013379 29952 Hs.37916 NM_013379 ENSG00000176978 DPP7 DPP2|DPPII|QPP dipeptidyl peptidase 7 protein-coding 140.5-34 chr17 67060979 67061345 + 0.5 NA Intergenic AluSx1|SINE|Alu 16608 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 117.5-57 chr2 216956154 216956452 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 85531 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 129-39 chr20 49172067 49172467 + 0.5 NA intron (NM_001322930, intron 1 of 12) intron (NM_001322930, intron 1 of 12) 16103 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 155-49 chr6 38636075 38636666 + 0.5 NA intron (NM_052893, intron 1 of 11) L2b|LINE|L2 3559 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 153.75-68 chr5 150128871 150129328 + 0.5 NA intron (NM_002609, intron 10 of 22) intron (NM_002609, intron 10 of 22) -15727 NM_005211 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 130-46 chr22 40327834 40328323 + 0.5 NA 3' UTR (NM_001024843, exon 24 of 24) 3' UTR (NM_001024843, exon 24 of 24) -18422 NM_001123378 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 112.75-7 chr1 232898032 232898338 + 0.5 NA Intergenic MER52A|LTR|ERV1 -52426 NR_138025 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 149.75-16 chr14 66033067 66033464 + 0.5 NA Intergenic Intergenic -453106 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 163.25-72 chr8 117395280 117395666 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -125240 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 120.5-40 chr17 79301381 79301713 + 0.5 NA intron (NM_001082575, intron 3 of 14) intron (NM_001082575, intron 3 of 14) 214601 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 134.75-31 chr2 52754098 52754564 + 0.5 NA Intergenic Intergenic -51716 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 130.75-14 chr12 11535657 11536144 + 0.5 NA Intergenic Intergenic -12130 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 139.25-11 chr10 67150013 67150425 + 0.5 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 137953 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 139-70 chr8 123430320 123430735 + 0.5 NA intron (NM_018024, intron 3 of 5) AluSz6|SINE|Alu 13753 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 132.25-4 chr1 189315919 189316393 + 0.5 NA Intergenic MER4C|LTR|ERV1 1159854 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 125-15 chr10 67726658 67726975 + 0.5 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -30621 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 132.25-60 chr3 39436209 39436701 + 0.5 NA Intergenic Intergenic 25401 NR_002324 6044 Hs.449909 NR_002324 ENSG00000202363 SNORA62 E2|E2-1|RNE2|RNU108 small nucleolar RNA, H/ACA box 62 snoRNA 125-98 chr9 135830623 135830979 + 0.5 NA intron (NM_015447, intron 7 of 16) L1MA9|LINE|L1 76745 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 120.25-69 chr8 31175059 31175504 + 0.5 NA 3' UTR (NM_000553, exon 35 of 35) 3' UTR (NM_000553, exon 35 of 35) -141925 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 121.75-27 chr15 91949862 91950181 + 0.5 NA intron (NR_135775, intron 2 of 10) AluJr|SINE|Alu 95717 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 143.25-40 chr20 47078104 47078498 + 0.5 NA intron (NM_172110, intron 7 of 13) intron (NM_172110, intron 7 of 13) -88666 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 114-17 chr11 81522862 81523169 + 0.5 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 367821 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 149.5-10 chr10 18067642 18067976 + 0.5 NA Intergenic MIRb|SINE|MIR -57247 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 130.25-21 chr12 54357766 54358126 + 0.5 NA intron (NR_120487, intron 1 of 3) intron (NR_120487, intron 1 of 3) 4255 NR_120486 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 171.5-63 chr4 170724318 170724959 + 0.5 NA Intergenic Intergenic 19097 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 124.75-89 chrX 86826007 86826322 + 0.5 NA intron (NM_001139515, intron 11 of 11) intron (NM_001139515, intron 11 of 11) 563196 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 116.25-36 chr17 67370731 67371082 + 0.5 NA Intergenic Intergenic -4329 NM_001316341 5718 Hs.4295 NM_002816 ENSG00000197170 PSMD12 Rpn5|STISS|p55 proteasome 26S subunit, non-ATPase 12 protein-coding 148-23 chr14 75879086 75879482 + 0.5 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 102711 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 118-59 chr6 46215582 46216012 + 0.5 NA Intergenic AluSp|SINE|Alu -44787 NM_001290073 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 113.75-109 chr8 82950757 82951032 + 0.5 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 38790 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 161-13 chr11 4111907 4112472 + 0.5 NA intron (NM_001318064, intron 6 of 17) intron (NM_001318064, intron 6 of 17) -3889 NM_001318065 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 116.75-84 chr9 29943219 29943576 + 0.5 NA Intergenic Intergenic 465057 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 184-35 chr3 141001210 141001646 + 0.5 NA Intergenic L1ME3|LINE|L1 -49919 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 117-63 chr4 82376509 82376886 + 0.5 NA Intergenic Intergenic -2701 NM_031369 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 152.5-94 chr7 8419660 8420220 + 0.5 NA Intergenic Intergenic -13669 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 113-10 chr1 213132021 213132432 + 0.5 NA intron (NM_001136138, intron 5 of 13) intron (NM_001136138, intron 5 of 13) 80985 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 126.75-66 chr4 65758742 65759190 + 0.5 NA Intergenic Intergenic -88471 NM_001281766 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 115-24 chr12 115070373 115070807 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -386415 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 116 chr1 36190068 36190370 + 0.5 NA Intergenic AluJb|SINE|Alu 34059 NM_001286366 55700 Hs.356096 NM_018067 ENSG00000116871 MAP7D1 PARCC1|RPRC1 MAP7 domain containing 1 protein-coding 113.25-22 chr11 98796775 98797108 + 0.5 NA Intergenic Intergenic -224008 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 180-20 chr14 48995096 48995496 + 0.5 NA Intergenic Intergenic 591084 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 114.25-51 chr2 9124525 9124844 + 0.5 NA Intergenic Intergenic -82081 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 119.25-37 chr18 5296470 5296865 + 0.5 NA promoter-TSS (NM_001143823) promoter-TSS (NM_001143823) 386 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 149-27 chr2 218862669 218863040 + 0.5 NA intron (NM_006522, intron 1 of 3) AluSx1|SINE|Alu 3049 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 113.75-84 chr4 98386405 98386844 + 0.5 NA intron (NM_021159, intron 5 of 14) intron (NM_021159, intron 5 of 14) 125240 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 133.25-44 chr2 119733995 119734352 + 0.5 NA Intergenic Intergenic -25749 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 136.75-67 chr3 192059133 192059650 + 0.5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -179239 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 118.75-3 chr1 37348599 37348941 + 0.5 NA Intergenic Intergenic 125673 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 117.25-91 chr8 71447287 71447565 + 0.5 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -85357 NM_001288574 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 154.5-8 chr1 226811988 226812356 + 0.5 NA Intergenic L1ME4c|LINE|L1 -58400 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 131.25-92 chr9 93921237 93921708 + 0.5 NA Intergenic Intergenic 33883 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 114.5-18 chr14 60867722 60868178 + 0.5 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 113129 NM_020810 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 135-26 chr14 72170748 72171108 + 0.5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 237401 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 122.75-78 chr7 103721542 103721860 + 0.5 NA intron (NM_005045, intron 8 of 64) intron (NM_005045, intron 8 of 64) 267815 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 120.75-64 chr3 52612995 52613309 + 0.5 NA intron (NM_001366074, intron 18 of 30) intron (NM_001366074, intron 18 of 30) 72447 NM_001350074 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 123.25-11 chr10 63847303 63847607 + 0.5 NA Intergenic MER9a2|LTR|ERVK -325565 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 197-38 chr3 188551192 188551896 + 0.5 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) 17122 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 135-41 chr2 82060665 82060950 + 0.5 NA Intergenic L1MEf|LINE|L1 -593861 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 122-53 chr4 25568554 25568897 + 0.5 NA intron (NR_134641, intron 1 of 3) intron (NR_134641, intron 1 of 3) 621 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 117.75-47 chr20 47468332 47468639 + 0.5 NA Intergenic Intergenic -33402 NM_181659 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 120.75-92 chr7 30740433 30740839 + 0.5 NA Intergenic Intergenic -11499 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 169.75-51 chr5 104944726 104945291 + 0.5 NA Intergenic L1MEg|LINE|L1 -154466 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 112.75-64 chr3 101104023 101104425 + 0.5 NA Intergenic Intergenic -110734 NM_001349331 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 118.75-100 chrY 11301746 11302102 + 0.5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1119666 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 113.25-74 chr2 138149110 138149430 + 0.5 NA Intergenic Intergenic 47386 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 116.75-33 chr17 76844869 76845247 + 0.5 NA Intergenic Intergenic -11108 NR_135283 283994 Hs.645372 NR_135283 ENSG00000267535 LINC00868 C17orf52 long intergenic non-protein coding RNA 868 ncRNA 160.75-25 chr16 46388517 46389003 + 0.5 NA Intergenic Intergenic 180337 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 114-72 chr6 24142999 24143335 + 0.5 NA intron (NM_080723, intron 3 of 3) LTR12|LTR|ERV1 16952 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 131.5-32 chr16 80833967 80834230 + 0.5 NA intron (NR_131948, intron 2 of 2) intron (NR_131948, intron 2 of 2) -29500 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 113.5-58 chr2 95100786 95101064 + 0.5 NA intron (NR_136152, intron 7 of 10) intron (NR_136152, intron 7 of 10) 20632 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 118.75-23 chr12 90346459 90346900 + 0.5 NA Intergenic Intergenic 53361 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 140-63 chr8 89306170 89306534 + 0.5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 451359 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 204-35 chr6 20126049 20126785 + 0.5 NA intron (NR_073465, intron 4 of 9) intron (NR_073465, intron 4 of 9) 86052 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 127.25-78 chr5 79538818 79539146 + 0.5 NA Intergenic Intergenic -24848 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 190.75-4 chr1 125167890 125168451 + 0.5 NA Intergenic Intergenic 3649058 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 124.75-70 chr5 156280364 156280833 + 0.5 NA Intergenic Intergenic -46159 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 125-30 chr15 60290398 60290669 + 0.5 NA Intergenic Intergenic 107453 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 172.5-51 chr4 46404904 46405358 + 0.5 NA Intergenic L1PA6|LINE|L1 -15003 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 139-56 chr6 55623077 55623535 + 0.5 NA Intergenic L1MA3|LINE|L1 -44092 NR_109869 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 132.5-113 chr8 76820317 76820792 + 0.5 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -137279 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 139.25-67 chr5 40610180 40610539 + 0.5 NA Intergenic Intergenic -69556 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 135.25-95 chr8 128115518 128115949 + 0.5 NA Intergenic L2a|LINE|L2 -34383 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 127-62 chr3 89513516 89513862 + 0.5 NA Intergenic L1M4|LINE|L1 406068 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 185.75-20 chr13 106019294 106019739 + 0.5 NA Intergenic Intergenic 312686 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 119.5-15 chr10 72507367 72507694 + 0.5 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 16456 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 159-25 chr15 57801544 57802124 + 0.5 NA Intergenic L1MA9|LINE|L1 95120 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 135.75-45 chr2 63801069 63801340 + 0.5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -39760 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 150.5 chr1 40281220 40281563 + 0.5 NA exon (NM_005857, exon 7 of 10) exon (NM_005857, exon 7 of 10) 23155 NM_005857 10269 Hs.132642 NM_005857 ENSG00000084073 ZMPSTE24 FACE-1|FACE1|HGPS|PRO1|STE24|Ste24p zinc metallopeptidase STE24 protein-coding 125.25-18 chr12 14256190 14256636 + 0.5 NA Intergenic Intergenic -109219 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 124.75-69 chr5 151792573 151792973 + 0.5 NA intron (NM_198395, intron 4 of 11) AluJb|SINE|Alu -20597 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 148-54 chr5 147749237 147749730 + 0.5 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 33245 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 130.75-35 chr2 13983113 13983553 + 0.5 NA Intergenic Intergenic 417625 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 123.25-23 chr13 107356523 107356849 + 0.5 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -35723 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 116.75-58 chr5 33582713 33583032 + 0.5 NA intron (NM_001324512, intron 16 of 21) L1MA1|LINE|L1 142096 NM_152295 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 119.5-124 chr8 141817527 141817808 + 0.5 NA Intergenic Intergenic -31354 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 141-72 chr6 145319487 145320012 + 0.5 NA Intergenic Intergenic 367128 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 131.25-82 chr7 50500267 50500720 + 0.5 NA intron (NM_001242888, intron 5 of 12) intron (NM_001242888, intron 5 of 12) -31266 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 133.5-21 chr11 133402284 133402813 + 0.5 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 129953 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 146.25-9 chr10 27633344 27633736 + 0.5 NA Intergenic L1ME3|LINE|L1 -111075 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 113.75-36 chr14 61450550 61450947 + 0.5 NA intron (NM_006255, intron 5 of 13) intron (NM_006255, intron 5 of 13) 119446 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 132-30 chr18 5451329 5451790 + 0.5 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 88997 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 127.25-65 chr3 194988841 194989199 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -105568 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 134.5-7 chr1 203579324 203579715 + 0.5 NA Intergenic Intergenic -47268 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 116-67 chr7 31442358 31442721 + 0.5 NA Intergenic Intergenic -71532 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 127.75-65 chr4 72237927 72238363 + 0.5 NA Intergenic Intergenic 199013 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 128.25-21 chr12 56104512 56104858 + 0.5 NA 5' UTR (NM_006191, exon 1 of 13) 5' UTR (NM_006191, exon 1 of 13) 126 NM_006191 5036 Hs.524498 NM_006191 ENSG00000170515 PA2G4 EBP1|HG4-1|p38-2G4 proliferation-associated 2G4 protein-coding 133.75-37 chr2 31689728 31690129 + 0.5 NA Intergenic HUERS-P3-int|LTR|ERV1 -108990 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 145-47 chr3 87363075 87363574 + 0.5 NA Intergenic Intergenic -86740 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 129.25-16 chr11 122724500 122724834 + 0.5 NA intron (NM_001363365, intron 1 of 13) L2c|LINE|L2 68945 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 120.25 chr1 25125876 25126303 + 0.5 NA Intergenic Looper|DNA|PiggyBac 102586 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 136.5-30 chr14 51617248 51617579 + 0.5 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) -17461 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 170.75-78 chr9 118451433 118451831 + 0.5 NA Intergenic Intergenic -228039 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 149-45 chr5 79333822 79334188 + 0.5 NA Intergenic Intergenic 97874 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 178.5-3 chr1 170668091 170668693 + 0.5 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 4261 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 135.75-108 chr8 130636562 130636985 + 0.5 NA Intergenic Intergenic -193099 NM_001362926 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 125.5-16 chr10 55441399 55441874 + 0.5 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -157406 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 131.25-69 chr5 9547807 9548217 + 0.5 NA promoter-TSS (NR_003689) promoter-TSS (NR_003689) -815 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 159.5-22 chr13 43369418 43369826 + 0.5 NA intron (NM_001347966, intron 6 of 17) L3|LINE|CR1 -79230 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 148.25-63 chr6 52238872 52239418 + 0.5 NA intron (NM_052872, intron 1 of 2) intron (NM_052872, intron 1 of 2) 5355 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 166.5-10 chr1 162468218 162468647 + 0.5 NA Intergenic L1ME2z|LINE|L1 -28742 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 129.25-10 chr10 77300438 77300790 + 0.5 NA intron (NM_001271518, intron 1 of 27) Kanga11a|DNA|TcMar-Tc2 50147 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 125.75-66 chr6 136406549 136406995 + 0.5 NA intron (NM_001198611, intron 3 of 16) AluSz6|SINE|Alu 60103 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 130-48 chr3 45566233 45566647 + 0.5 NA Intergenic Intergenic -28311 NM_014240 8994 Hs.193370 NM_014240 ENSG00000144791 LIMD1 - LIM domains containing 1 protein-coding 119.75-21 chr12 120196716 120196980 + 0.5 NA exon (NM_053275, exon 8 of 8) exon (NM_053275, exon 8 of 8) -2133 NM_006836 10985 Hs.298716 NM_006836 ENSG00000089154 GCN1 GCN1L|GCN1L1|PRIC295 GCN1 activator of EIF2AK4 protein-coding 115.5-72 chr5 38424199 38424590 + 0.5 NA intron (NM_182798, intron 7 of 16) intron (NM_182798, intron 7 of 16) 20853 NM_182798 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 135.25-38 chr18 12862653 12862924 + 0.5 NA intron (NM_080423, intron 1 of 8) MLT1J|LTR|ERVL-MaLR 21449 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 113-44 chr2 54033279 54033531 + 0.5 NA intron (NM_001320587, intron 2 of 5) AluJb|SINE|Alu 62292 NM_001320586 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 123.75-99 chr7 106061553 106062037 + 0.5 NA Intergenic Intergenic 50517 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 121.5-55 chr2 5885678 5886059 + 0.5 NA Intergenic Intergenic -46819 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 123.25-57 chr3 90014629 90014899 + 0.5 NA Intergenic L1M4|LINE|L1 907143 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 149.75-63 chr7 92163929 92164478 + 0.5 NA exon (NM_001161528, exon 1 of 5) exon (NM_001161528, exon 1 of 5) 1073 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 136.75-86 chr6 93846680 93847170 + 0.5 NA Intergenic MLT2A1|LTR|ERVL 128622 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 119.5-47 chr16 17824028 17824397 + 0.5 NA Intergenic Intergenic -353252 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 127.5-114 chr6 161377784 161378167 + 0.5 NA intron (NM_004562, intron 10 of 11) MLT1A|LTR|ERVL-MaLR -93002 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 183.75-22 chr15 63443816 63444354 + 0.5 NA Intergenic Intergenic 53855 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 122-55 chr4 35730280 35730705 + 0.5 NA Intergenic Intergenic 513447 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 150.75-15 chr15 59785581 59786157 + 0.5 NA Intergenic L1PB|LINE|L1 -96549 NM_001320674 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 138.75-64 chr6 7157975 7158352 + 0.5 NA intron (NM_001003699, intron 1 of 12) intron (NM_001003699, intron 1 of 12) 50202 NM_001003698 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 119.75-29 chr15 63432891 63433252 + 0.5 NA intron (NR_120375, intron 6 of 6) intron (NR_120375, intron 6 of 6) 42841 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 118.25-70 chr4 62736882 62737297 + 0.5 NA Intergenic Intergenic -575324 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 124.25-9 chr1 209511231 209511660 + 0.5 NA Intergenic L1MB7|LINE|L1 -72269 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 114-33 chr14 54650884 54651219 + 0.5 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 83439 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 116.5-119 chr8 66352438 66352862 + 0.5 NA Intergenic Intergenic 76327 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 132.25-83 chr7 25663420 25663861 + 0.5 NA promoter-TSS (NR_157831) promoter-TSS (NR_157831) -500 NR_157830 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 142.5-88 chr7 82562324 82562640 + 0.5 NA Intergenic AluJr|SINE|Alu -118526 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 180.5-20 chr12 17224065 17224617 + 0.5 NA Intergenic Intergenic 235594 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 171.75-27 chr2 31979334 31979718 + 0.5 NA intron (NR_126034, intron 1 of 6) intron (NR_126034, intron 1 of 6) 31138 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 123-46 chr5 38489827 38490186 + 0.5 NA intron (NM_001127671, intron 15 of 19) AluJb|SINE|Alu 44460 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 133-71 chr9 36879553 36879872 + 0.5 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) 13819 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 175.5-40 chr19 5671411 5671851 + 0.5 NA Intergenic AluJo|SINE|Alu 8607 NM_001365761 125988 Hs.356626 NM_205767 ENSG00000174917 MICOS13 C19orf70|MIC13|P117|QIL1 mitochondrial contact site and cristae organizing system subunit 13 protein-coding 130.25-49 chr2 182658786 182659284 + 0.5 NA Intergenic Intergenic -57222 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 116-40 chr2 118834021 118834405 + 0.5 NA Intergenic Intergenic 13970 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 165.25-15 chr13 74397071 74397615 + 0.5 NA Intergenic Intergenic 21772 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 131-5 chr1 117665858 117666188 + 0.5 NA Intergenic L1MEc|LINE|L1 59975 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 163.75-59 chr6 7738628 7739118 + 0.5 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 12774 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 136.25-30 chr15 49520348 49520856 + 0.5 NA intron (NM_001330293, intron 9 of 10) THE1B|LTR|ERVL-MaLR 97360 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 113-96 chr7 120681459 120681828 + 0.5 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 176501 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 134.5-84 chr6 139923437 139923879 + 0.5 NA Intergenic Intergenic -52661 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 188-30 chr5 118648361 118648901 + 0.5 NA Intergenic Intergenic 52443 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 125.25-83 chr8 72028674 72029104 + 0.5 NA intron (NM_007332, intron 24 of 26) intron (NM_007332, intron 24 of 26) 46695 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 117.25-64 chr4 41223239 41223548 + 0.5 NA intron (NR_102709, intron 1 of 2) intron (NR_102709, intron 1 of 2) -8851 NM_001166050 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 116.25-82 chr7 34534149 34534539 + 0.5 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -123874 NM_207173 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 138.25-63 chr4 14066468 14066905 + 0.5 NA Intergenic Intergenic -45282 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 128-43 chr3 189995555 189995891 + 0.5 NA intron (NM_001134418, intron 1 of 14) L1MA6|LINE|L1 125174 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 117.25-75 chr5 28785825 28786255 + 0.5 NA Intergenic Intergenic -140830 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 150.5-51 chr2 195612779 195613240 + 0.5 NA Intergenic Intergenic -43949 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 135-37 chr2 21269546 21270029 + 0.5 NA Intergenic Intergenic 145801 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 143.75 chr1 3927252 3927543 + 0.5 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -13215 NR_040065 728716 Hs.668359 NR_040065 LINC01346 - long intergenic non-protein coding RNA 1346 ncRNA 162.75-11 chr11 79563827 79564278 + 0.5 NA Intergenic Intergenic -123022 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 118.25-14 chr11 13216718 13217152 + 0.5 NA Intergenic Intergenic -59717 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 153 chr1 100682445 100682919 + 0.5 NA Intergenic Charlie13b|DNA|hAT-Charlie -35678 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 127-72 chr4 88927804 88928168 + 0.5 NA intron (NM_014883, intron 5 of 23) L1M2|LINE|L1 -104625 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 121.5-36 chr14 83943306 83943641 + 0.5 NA Intergenic THE1B|LTR|ERVL-MaLR 1300841 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 128.5-67 chr4 38853508 38853860 + 0.5 NA intron (NM_006068, intron 1 of 1) FRAM|SINE|Alu 3133 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 146.25-78 chr9 136935573 136936023 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 8940 NM_018998 54461 Hs.522507 NM_018998 ENSG00000159069 FBXW5 Fbw5 F-box and WD repeat domain containing 5 protein-coding 118.25-15 chr11 35058496 35058864 + 0.5 NA Intergenic LTR16D2|LTR|ERVL 79352 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 137.5-108 chr7 119833733 119834099 + 0.5 NA intron (NR_131960, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 73459 NR_131962 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 146.75-68 chr9 38704106 38704400 + 0.5 NA Intergenic Intergenic 83165 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 158-63 chr8 54005221 54005667 + 0.5 NA intron (NR_109901, intron 2 of 11) L2c|LINE|L2 17004 NR_109902 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 113.75-95 chr7 9667395 9667748 + 0.5 NA Intergenic MER61-int|LTR|ERV1 33301 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 142.25-15 chr12 61190126 61190693 + 0.5 NA Intergenic Intergenic 1002430 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 127.25-29 chr14 68254670 68255052 + 0.5 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 373926 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 140-6 chr10 34269631 34270037 + 0.5 NA exon (NM_001184785, exon 22 of 25) exon (NM_001184785, exon 22 of 25) -497154 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 187.25-55 chr5 65708034 65708558 + 0.5 NA intron (NM_019072, intron 4 of 10) intron (NM_019072, intron 4 of 10) 13813 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 122.25-21 chr11 106639997 106640432 + 0.5 NA Intergenic MER57A-int|LTR|ERV1 378262 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 123.5-64 chr22 46938946 46939405 + 0.5 NA intron (NR_104292, intron 10 of 13) Looper|DNA|PiggyBac -23133 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 140.25-44 chr20 13281063 13281530 + 0.5 NA intron (NM_080826, intron 3 of 5) L2c|LINE|L2 -41609 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 116-3 chr1 43416918 43417290 + 0.5 NA intron (NM_015284, intron 7 of 70) intron (NM_015284, intron 7 of 70) 27205 NM_015284 23334 Hs.643560 NM_015284 ENSG00000198198 SZT2 C1orf84|EIEE18|KIAA0467|SZT2A|SZT2B SZT2 subunit of KICSTOR complex protein-coding 141.25-71 chr8 53299124 53299407 + 0.5 NA Intergenic L1PREC2|LINE|L1 -47568 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 122.75-50 chr21 30560972 30561424 + 0.5 NA exon (NM_181614, exon 1 of 1) exon (NM_181614, exon 1 of 1) 115 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 120.75-25 chr12 104940123 104940555 + 0.5 NA intron (NM_001352169, intron 1 of 11) intron (NM_001352169, intron 1 of 11) 17951 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 129.5-83 chr6 153627556 153628034 + 0.5 NA Intergenic Intergenic -382701 NM_001145279 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 134.25-98 chr9 14044491 14044966 + 0.5 NA Intergenic L1ME4b|LINE|L1 116757 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 136.25-17 chr12 1883647 1883989 + 0.5 NA intron (NM_172364, intron 12 of 37).2 L2b|LINE|L2 34834 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 119.75-22 chr13 28218328 28218603 + 0.5 NA intron (NM_175854, intron 5 of 18) intron (NM_175854, intron 5 of 18) -79291 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 192.5-30 chr2 196845946 196846569 + 0.5 NA intron (NM_001321099, intron 23 of 27) intron (NM_001321099, intron 23 of 27) -35981 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 149.25-2 chr1 80523713 80524253 + 0.5 NA Intergenic Intergenic -11772 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 129.75-33 chr17 53922798 53923228 + 0.5 NA Intergenic Intergenic 100086 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 116.25-29 chr16 60012750 60013086 + 0.5 NA intron (NR_110917, intron 1 of 3) L1PA10|LINE|L1 157565 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 129-65 chr6 45449528 45449951 + 0.5 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 27464 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 178.5-50 chr3 126610302 126610695 + 0.5 NA intron (NM_001173513, intron 13 of 14) intron (NM_001173513, intron 13 of 14) 44626 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 118.25-75 chr5 31627184 31627510 + 0.5 NA Intergenic Intergenic -11784 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 184.5-28 chr15 59010992 59011519 + 0.5 NA intron (NM_001270530, intron 1 of 13) L2c|LINE|L2 23109 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 135.75-44 chr2 62866054 62866586 + 0.5 NA intron (NM_001142615, intron 9 of 22) L1ME1|LINE|L1 159423 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 122.75-62 chr4 145475812 145476202 + 0.5 NA Intergenic L2a|LINE|L2 -5299 NM_001354812 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 133.5-84 chr4 155248027 155248467 + 0.5 NA Intergenic Intergenic 39611 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 154-64 chr7 99301803 99302266 + 0.5 NA Intergenic AluSx|SINE|Alu -23839 NM_001190996 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 121.75-26 chr15 69553358 69553813 + 0.5 NA Intergenic Intergenic -8135 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 127-78 chr5 145305017 145305443 + 0.5 NA Intergenic HAL1|LINE|L1 530112 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 113-25 chr14 58870505 58870861 + 0.5 NA intron (NR_110547, intron 1 of 5) L1ME4a|LINE|L1 42395 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 119.75-79 chr7 103606657 103607016 + 0.5 NA intron (NM_005045, intron 22 of 64) intron (NM_005045, intron 22 of 64) -160629 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 140-9 chr11 11313945 11314348 + 0.5 NA intron (NM_001363464, intron 8 of 9) intron (NM_001363464, intron 8 of 9) 39104 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 117-41 chr2 168111878 168112313 + 0.5 NA intron (NM_013233, intron 10 of 17) intron (NM_013233, intron 10 of 17) 135500 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 126.5-2 chr1 41160196 41160656 + 0.5 NA intron (NM_001172218, intron 4 of 15) UCON37|Unknown|Unknown 1006 NM_001031694 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 131.75-35 chr17 61709359 61709734 + 0.5 NA intron (NM_032043, intron 17 of 19) intron (NM_032043, intron 17 of 19) -118327 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 123.75-108 chr9 137746671 137747051 + 0.5 NA intron (NM_001354263, intron 6 of 26) intron (NM_001354263, intron 6 of 26) 41545 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 126-30 chr15 82095331 82095723 + 0.5 NA non-coding (NR_120367, exon 5 of 6) non-coding (NR_120367, exon 5 of 6) 6933 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 113.75-75 chr3 116563982 116564427 + 0.5 NA intron (NR_046624, intron 1 of 1) MIRb|SINE|MIR 11731 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 113-13 chr10 131797965 131798270 + 0.5 NA Intergenic Intergenic -7918 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 127-35 chr16 23682139 23682635 + 0.5 NA intron (NM_005030, intron 4 of 9) Charlie4z|DNA|hAT-Charlie 3498 NM_005030 5347 Hs.592049 NM_005030 ENSG00000166851 PLK1 PLK|STPK13 polo like kinase 1 protein-coding 118.25-84 chr5 147900224 147900672 + 0.5 NA intron (NM_206966, intron 2 of 3) Charlie4z|DNA|hAT-Charlie 6090 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 180-62 chr7 33486479 33486876 + 0.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 357113 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 116.25-40 chr18 74321871 74322146 + 0.5 NA intron (NM_001174123, intron 3 of 13) L1MC4a|LINE|L1 6169 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 171.5-75 chr6 52874335 52874796 + 0.5 NA Intergenic Intergenic -28470 NM_153699 221357 Hs.646984 NM_153699 ENSG00000182793 GSTA5 - glutathione S-transferase alpha 5 protein-coding 122.5-61 chr3 81905768 81906247 + 0.5 NA Intergenic Intergenic -80135 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 137.25-85 chrX 93508890 93509301 + 0.5 NA Intergenic L1MD|LINE|L1 164483 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 123.5-46 chr19 48018922 48019311 + 0.5 NA intron (NM_022142, intron 4 of 6) AluSx|SINE|Alu 24484 NM_022142 64100 Hs.104894 NM_022142 ENSG00000169393 ELSPBP1 E12|EDDM12|EL149|HE12 epididymal sperm binding protein 1 protein-coding 139.25-17 chr11 79406713 79407128 + 0.5 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) -4811 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 113.5-79 chr3 133162296 133162678 + 0.5 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 37666 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 123.75-3 chr1 33555755 33556147 + 0.5 NA intron (NM_052896, intron 54 of 69) Tigger1|DNA|TcMar-Tigger 83306 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 123.75-4 chr1 53483818 53484112 + 0.5 NA Intergenic Intergenic 24566 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 142-2 chr1 53566231 53566554 + 0.5 NA intron (NM_147193, intron 3 of 9) L1MC1|LINE|L1 106993 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 184.75-37 chr20 40199672 40200212 + 0.5 NA Intergenic Intergenic 195481 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 113.5-23 chr11 105440472 105440881 + 0.5 NA Intergenic Intergenic -169397 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 171.5-47 chr2 217098344 217098847 + 0.5 NA Intergenic Intergenic -184138 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 126.75-11 chr10 71882153 71882407 + 0.5 NA Intergenic AluSx1|SINE|Alu -31029 NM_002778 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 171.5-96 chrX 65720535 65721159 + 0.5 NA intron (NM_002444, intron 2 of 12) intron (NM_002444, intron 2 of 12) 53193 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 127.5-61 chr2 76283605 76283981 + 0.5 NA Intergenic Intergenic -572878 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 117.25-12 chr10 42849982 42850447 + 0.5 NA Intergenic L1MA5|LINE|L1 -21307 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 191.75-41 chr7 105426900 105427415 + 0.5 NA Intergenic Tigger1|DNA|TcMar-Tigger -37767 NM_001350746 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 119-62 chr6 36481524 36481878 + 0.5 NA exon (NM_173562, exon 6 of 8) exon (NM_173562, exon 6 of 8) 38701 NR_104480 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 164.75-60 chr6 50442227 50442721 + 0.5 NA Intergenic Intergenic -271070 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 135.75-52 chr2 143825107 143825507 + 0.5 NA Intergenic Intergenic -111760 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 134-43 chr2 229209957 229210426 + 0.5 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 21901 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 140-67 chr9 8386446 8386778 + 0.5 NA intron (NM_130392, intron 22 of 30) intron (NM_130392, intron 22 of 30) 347334 NM_130392 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 121.5-111 chr9 27507553 27507867 + 0.5 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -16604 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 143.5-69 chr4 34143192 34143626 + 0.5 NA intron (NR_147184, intron 2 of 3) L1ME3G|LINE|L1 -103516 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 147.75-11 chr11 14457499 14457873 + 0.5 NA 3' UTR (NM_001144062, exon 22 of 22) 3' UTR (NM_001144062, exon 22 of 22) 42172 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 128.25-38 chr20 39619840 39620298 + 0.5 NA Intergenic L1ME1|LINE|L1 -384392 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 133.25-10 chr10 53583409 53583756 + 0.5 NA Intergenic L1MC1|LINE|L1 -811882 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 149.25-48 chr5 12903675 12904246 + 0.5 NA intron (NR_147005, intron 3 of 4) L1M5|LINE|L1 128926 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 115.5-70 chr4 108779363 108779679 + 0.5 NA Intergenic AluSx|SINE|Alu -16468 NM_001331031 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 256-11 chr17 38946260 38946871 + 0.5 NA intron (NM_001008777, intron 6 of 10) intron (NM_001008777, intron 6 of 10) 20838 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 123.25-25 chr14 100521472 100521948 + 0.5 NA intron (NM_001350950, intron 3 of 5) L1MC5|LINE|L1 46360 NM_001159531 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 120.25-38 chr2 146388717 146389195 + 0.5 NA Intergenic Intergenic -198101 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 133.75-23 chr14 60017914 60018220 + 0.5 NA intron (NM_001355272, intron 24 of 32) intron (NM_001355272, intron 24 of 32) -73844 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 113.5-117 chr8 98746666 98747070 + 0.5 NA intron (NM_006281, intron 4 of 10) AluJr4|SINE|Alu 78803 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 122.5-76 chr5 127833036 127833384 + 0.5 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 129821 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 157-28 chr2 99112956 99113387 + 0.5 NA intron (NM_001349012, intron 2 of 18) MLT1F1|LTR|ERVL-MaLR 28009 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 125-23 chr13 62619510 62619792 + 0.5 NA Intergenic L1MA4A|LINE|L1 177041 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 112.75-47 chr2 66526135 66526436 + 0.5 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -47745 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 116.5-93 chr5 102760421 102760705 + 0.5 NA intron (NR_157231, intron 1 of 14) MER3|DNA|hAT-Charlie 5258 NM_001364589 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 138.75-21 chr14 75881491 75881844 + 0.5 NA intron (NM_015072, intron 29 of 31) intron (NM_015072, intron 29 of 31) 100328 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 150.5-13 chr11 123963949 123964403 + 0.5 NA Intergenic L1MCa|LINE|L1 13515 NM_001004474 219873 Hs.553637 NM_001004474 ENSG00000196248 OR10S1 OR11-279 olfactory receptor family 10 subfamily S member 1 protein-coding 122.5-21 chr12 112575744 112576127 + 0.5 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 699 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 139.5-77 chr5 21221529 21222025 + 0.5 NA Intergenic Intergenic -237703 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 149-3 chr1 87179067 87179486 + 0.5 NA Intergenic Intergenic -33393 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 184.75-50 chr5 103718657 103719185 + 0.5 NA Intergenic Intergenic -156132 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 138.75-83 chr9 94173200 94173523 + 0.5 NA Intergenic Intergenic -2596 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 116.5-74 chr20 56824177 56824639 + 0.5 NA Intergenic Intergenic 195102 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 171.75-54 chr8 596463 597083 + 0.5 NA Intergenic HAL1|LINE|L1 -50992 NM_175075 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 122.25-49 chr2 51953179 51953596 + 0.5 NA intron (NR_135237, intron 7 of 10) THE1B-int|LTR|ERVL-MaLR -417261 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 146-30 chr2 125406048 125406518 + 0.5 NA Intergenic Intergenic 711702 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 124-36 chr20 42529951 42530287 + 0.5 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -155364 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 125.5-89 chr4 26438065 26438442 + 0.5 NA Intergenic Intergenic 52231 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 123.5-95 chr6 126962389 126962832 + 0.5 NA Intergenic Intergenic -156061 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 144.75-14 chr10 71551095 71551486 + 0.5 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -39370 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 112.75-16 chr10 99063225 99063564 + 0.5 NA intron (NM_021828, intron 3 of 11) L1ME3G|LINE|L1 -138826 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 114.75-27 chr14 30999393 30999688 + 0.5 NA intron (NM_001083893, intron 1 of 17) L1M4|LINE|L1 15202 NR_030354 693209 NR_030354 ENSG00000207952 MIR624 MIRN624|hsa-mir-624|mir-624 microRNA 624 ncRNA 112.75-70 chr5 143738098 143738337 + 0.5 NA Intergenic Intergenic 58357 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 129.25-13 chr11 13022901 13023407 + 0.5 NA Intergenic L1M4|LINE|L1 13838 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 130-62 chr5 28115682 28116037 + 0.5 NA Intergenic THE1A-int|LTR|ERVL-MaLR 171806 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 113.75-6 chr1 68260110 68260456 + 0.5 NA Intergenic Intergenic -27737 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 132.25-49 chr2 181687049 181687526 + 0.5 NA Intergenic Intergenic -6622 NM_002500 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 128.5-48 chr20 43833569 43833875 + 0.5 NA Intergenic L2a|LINE|L2 -60996 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 115.75-87 chr7 20722655 20722932 + 0.5 NA intron (NM_178559, intron 11 of 18) AluSx1|SINE|Alu 64093 NM_182700 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 120-81 chr7 33412436 33412869 + 0.5 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 283088 NM_001348041 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 122.5-73 chr5 107527702 107528074 + 0.5 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 143049 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 140.75-67 chr8 117303514 117303795 + 0.5 NA Intergenic AluSg|SINE|Alu 168659 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 137.25-67 chr6 159508875 159509416 + 0.5 NA Intergenic MLT2C2|LTR|ERVL 125614 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 154.25-62 chr8 79918440 79918901 + 0.5 NA TTS (NM_014018) TTS (NM_014018) -46933 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 115.5-83 chr6 129918428 129918826 + 0.5 NA Intergenic Charlie15b|DNA|hAT-Charlie -57312 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 136.75-54 chr20 8647229 8647615 + 0.5 NA intron (NM_182734, intron 5 of 32) L1M5|LINE|L1 -183763 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 161-33 chr18 4733317 4733855 + 0.5 NA Intergenic Intergenic -278279 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 160-37 chr6 52347451 52348053 + 0.5 NA Intergenic Intergenic -14399 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 159.5-62 chr3 197387551 197387981 + 0.5 NA Intergenic Intergenic -88445 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 117-8 chr10 25470612 25471019 + 0.5 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -180897 NR_108067 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 122.75-33 chr17 76115027 76115465 + 0.5 NA Intergenic AluJo|SINE|Alu -11459 NM_001145297 23265 Hs.514496 NM_015219 ENSG00000182473 EXOC7 2-5-3p|BLOM4|EX070|EXO70|EXOC1|Exo70p|YJL085W exocyst complex component 7 protein-coding 118.25-37 chr15 96408022 96408429 + 0.5 NA Intergenic AluSx|SINE|Alu 74460 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 168.25-17 chr12 127992050 127992474 + 0.5 NA Intergenic Intergenic -8371 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 133.75-10 chr10 15924743 15925033 + 0.5 NA Intergenic L1M4c|LINE|L1 -64355 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 183.25-33 chr3 187262813 187263391 + 0.5 NA intron (NR_033519, intron 1 of 9) intron (NR_033519, intron 1 of 9) -28170 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 182-24 chr2 84700065 84700529 + 0.5 NA intron (NM_001370, intron 48 of 76) L2|LINE|L2 180787 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 132-13 chr10 49077388 49077753 + 0.5 NA intron (NM_001031746, intron 3 of 7) L1MD1|LINE|L1 37952 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 131.25-67 chr4 65083463 65083867 + 0.5 NA Intergenic L1MEg|LINE|L1 -79165 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 127.75-6 chr1 216057024 216057392 + 0.5 NA intron (NM_206933, intron 30 of 71) intron (NM_206933, intron 30 of 71) -15257 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 128.25-47 chr3 44829715 44830077 + 0.5 NA intron (NM_020242, intron 24 of 34).2 intron (NM_020242, intron 24 of 34).2 -31992 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 125-24 chr14 52444602 52444957 + 0.5 NA intron (NM_001160047, intron 18 of 20) L1ME4a|LINE|L1 107726 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 128-32 chr20 52801282 52801656 + 0.5 NA Intergenic Intergenic -170889 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 166.75-22 chr17 57786949 57787562 + 0.5 NA Intergenic Intergenic -41956 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 134-49 chr3 48937750 48938220 + 0.5 NA intron (NM_001349209, intron 3 of 15) AluY|SINE|Alu -18600 NR_161301 646450 Hs.720727 NM_001123040 ENSG00000221883 ARIH2OS C3orf71 ariadne RBR E3 ubiquitin protein ligase 2 opposite strand ncRNA 127-44 chr2 39531768 39532257 + 0.5 NA intron (NR_037875, intron 5 of 5) MLT1A0|LTR|ERVL-MaLR 94596 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 153.75-51 chr3 25379602 25379998 + 0.5 NA intron (NM_001290300, intron 1 of 7) MER104|DNA|TcMar-Tc2 5127 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 159.75-60 chr7 47296211 47296687 + 0.5 NA intron (NM_022748, intron 24 of 30) L1P4|LINE|L1 168354 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 114.25-115 chr9 109853245 109853564 + 0.5 NA intron (NM_053016, intron 1 of 6) L1ME4a|LINE|L1 73206 NM_053016 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 149.25-56 chr6 38511526 38511912 + 0.5 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 30123 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 135-24 chr14 67568010 67568482 + 0.5 NA intron (NM_020715, intron 7 of 28) L1PA10|LINE|L1 32022 NM_004569 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 139.75-2 chr1 53899592 53899910 + 0.5 NA intron (NM_001324316, intron 1 of 1) AluJo|SINE|Alu 5564 NR_136693 1733 Hs.251415 NM_000792 ENSG00000211452 DIO1 5DI|TXDI1 iodothyronine deiodinase 1 protein-coding 133.5-87 chr5 17795441 17795972 + 0.5 NA Intergenic Intergenic -11568 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 114.75-41 chr17 72045708 72046122 + 0.5 NA intron (NR_110877, intron 1 of 2) intron (NR_110877, intron 1 of 2) 11819 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 156.25-46 chr22 33577282 33577878 + 0.5 NA intron (NM_133642, intron 5 of 14) intron (NM_133642, intron 5 of 14) 127340 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 162.25-18 chr18 22377306 22377737 + 0.5 NA Intergenic L1ME1|LINE|L1 40394 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 118.5-105 chr7 75983023 75983478 + 0.5 NA intron (NM_000941, intron 8 of 15) AluSx1|SINE|Alu 11345 NM_001317803 83862 Hs.488835 NM_031925 ENSG00000189077 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 173.25-26 chr2 22456754 22457310 + 0.5 NA Intergenic AluY|SINE|Alu -79447 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 142.75-43 chr2 86205298 86205859 + 0.5 NA intron (NM_016622, intron 1 of 3) L2c|LINE|L2 6121 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 119.5-94 chr5 14619545 14619887 + 0.5 NA Intergenic Intergenic 32666 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 115-54 chr3 33079109 33079483 + 0.5 NA intron (NM_001317040, intron 1 of 16) L1ME2z|LINE|L1 17536 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 138.25-72 chr5 32664976 32665363 + 0.5 NA Intergenic MER52-int|LTR|ERV1 -25703 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 131.25-17 chr10 86515311 86515696 + 0.5 NA intron (NM_001318328, intron 2 of 18) AluSx1|SINE|Alu 6281 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 121.25-46 chr3 139009868 139010193 + 0.5 NA Intergenic L1M1|LINE|L1 -3762 NM_001134659 729627 Hs.121314 NM_001134659 ENSG00000206260 PRR23A - proline rich 23A protein-coding 115.5-38 chr17 81283007 81283325 + 0.5 NA intron (NM_001037984, intron 4 of 15) intron (NM_001037984, intron 4 of 15) 12141 NM_001037984 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 130-67 chr5 154355921 154356299 + 0.5 NA intron (NM_198321, intron 4 of 11) intron (NM_198321, intron 4 of 11) 9004 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 125.25-84 chr8 120263846 120264285 + 0.5 NA intron (NM_021110, intron 24 of 47) L1MB7|LINE|L1 138963 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 125.25-38 chr2 72384016 72384441 + 0.5 NA intron (NM_001321729, intron 18 of 22) intron (NM_001321729, intron 18 of 22) -236366 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 149.75-60 chr7 5485108 5485544 + 0.5 NA intron (NM_024963, intron 4 of 4) intron (NM_024963, intron 4 of 4) 10591 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 118.75-22 chr12 63160635 63160969 + 0.5 NA Intergenic L4_A_Mam|LINE|RTE-X -7992 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 149.75-67 chr8 60911043 60911638 + 0.5 NA Intergenic Intergenic 56408 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 130.75-54 chr3 180015450 180015848 + 0.5 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) 21288 NM_001256753 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 126.75-26 chr15 40998537 40998845 + 0.5 NA intron (NM_017553, intron 28 of 35) AluSx1|SINE|Alu 45220 NM_001142776 79094 Hs.155569 NM_024111 ENSG00000128965 CHAC1 - ChaC glutathione specific gamma-glutamylcyclotransferase 1 protein-coding 127.75-92 chr7 133241225 133241659 + 0.5 NA Intergenic L1ME3A|LINE|L1 -11625 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 131-70 chr7 44313099 44313427 + 0.5 NA intron (NM_172081, intron 1 of 18) intron (NM_172081, intron 1 of 18) 12331 NM_001220 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 119-34 chr18 3914793 3915046 + 0.5 NA intron (NM_001242761, intron 3 of 11) AluJb|SINE|Alu 29566 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 138.75-25 chr15 71210092 71210584 + 0.5 NA intron (NM_024817, intron 2 of 16) intron (NM_024817, intron 2 of 16) -21279 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 179.5-10 chr1 212203716 212204205 + 0.5 NA Intergenic Intergenic 30776 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 187.75-47 chr7 35772292 35772784 + 0.5 NA intron (NR_120511, intron 3 of 5) L2c|LINE|L2 28087 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 127.5-16 chr10 66015612 66015979 + 0.5 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 444370 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 136.75-50 chr2 118083426 118083831 + 0.5 NA Intergenic Intergenic -4790 NM_001321330 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 137.25-13 chr10 114280924 114281325 + 0.5 NA intron (NM_001272046, intron 8 of 13) intron (NM_001272046, intron 8 of 13) 41510 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 130.5-12 chr1 214624791 214625242 + 0.5 NA intron (NM_016343, intron 7 of 19) L1MDa|LINE|L1 21821 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 133.75-2 chr1 99023738 99024005 + 0.5 NA intron (NR_033940, intron 1 of 2) AluJb|SINE|Alu -19010 NM_001010861 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 124.5-42 chr17 58940391 58940681 + 0.5 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 166344 NM_001320989 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 113-91 chr7 3161220 3161631 + 0.5 NA Intergenic AluSx1|SINE|Alu -2852 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 116.5-17 chr11 41062743 41063057 + 0.5 NA intron (NM_001258419, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 396736 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 112.75-87 chr8 133738292 133738540 + 0.5 NA Intergenic Intergenic 38936 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 130.75-30 chr17 73267176 73267578 + 0.5 NA Intergenic AluSx1|SINE|Alu -5497 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 132.5-116 chr9 12807711 12808158 + 0.5 NA intron (NR_125775, intron 1 of 3) L1MCa|LINE|L1 6455 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 121.5-23 chr12 39166833 39167192 + 0.5 NA Intergenic Intergenic -261421 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 163.25-38 chr2 81470379 81470908 + 0.5 NA Intergenic Intergenic -3697 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 127.25-26 chr14 51281368 51281656 + 0.5 NA Intergenic L1MC4a|LINE|L1 41265 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 114-25 chr12 48458378 48458736 + 0.5 NA Intergenic L2c|LINE|L2 -14108 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 131-43 chr3 178952562 178952853 + 0.5 NA Intergenic L1MC5|LINE|L1 -92302 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 183.5-26 chr16 51634212 51634785 + 0.5 NA Intergenic Intergenic -128021 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 158.5-77 chr4 26787800 26788267 + 0.5 NA Intergenic Intergenic 72211 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 118-32 chr17 30491458 30491760 + 0.5 NA intron (NM_004871, intron 5 of 8) AluSx1|SINE|Alu 14201 NM_001007025 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 125-44 chr18 2953746 2954055 + 0.5 NA intron (NM_014646, intron 3 of 19) intron (NM_014646, intron 3 of 19) -7277 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 122.25-23 chr12 12503863 12504275 + 0.5 NA intron (NM_030640, intron 3 of 6).2 MamGypsy2-LTR|LTR|Gypsy 58794 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 133.25-40 chr2 49383779 49384241 + 0.5 NA Intergenic Intergenic -229483 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 166.75-40 chr20 42682263 42682668 + 0.5 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) -3018 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 131-9 chr1 215911712 215912068 + 0.5 NA intron (NM_206933, intron 38 of 71) L1MA1|LINE|L1 -160575 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 145.5-8 chr1 222995193 222995770 + 0.5 NA intron (NM_001369594, intron 7 of 7) intron (NM_001369594, intron 7 of 7) 67057 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 150.5-29 chr14 102637815 102638198 + 0.5 NA intron (NM_015156, intron 2 of 11) intron (NM_015156, intron 2 of 11) 45357 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 119.5-77 chr3 40429085 40429456 + 0.5 NA TTS (NM_001291960) TTS (NM_001291960) 24038 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 127.5-19 chr10 111698352 111698845 + 0.5 NA Intergenic Intergenic 485167 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 134-31 chr17 75396859 75397179 + 0.5 NA intron (NM_002086, intron 1 of 5) intron (NM_002086, intron 1 of 5) 8659 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 124.75-51 chr2 234036276 234036730 + 0.5 NA Intergenic L1MA4A|LINE|L1 -14199 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 131.25-93 chr9 134972460 134972859 + 0.5 NA Intergenic L2a|LINE|L2 -54747 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 131.75-48 chr20 36809848 36810133 + 0.5 NA exon (NM_080627, exon 7 of 15) exon (NM_080627, exon 7 of 15) -36227 NM_001145318 79980 Hs.632268 NM_024918 ENSG00000149636 DSN1 C20orf172|KNL3|MIS13|dJ469A13.2|hKNL-3 DSN1 component of MIS12 kinetochore complex protein-coding 152-29 chr17 47365472 47365982 + 0.5 NA intron (NM_152347, intron 10 of 24) LTR85c|LTR|Gypsy? 41772 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 132.75-32 chr13 81452019 81452311 + 0.5 NA Intergenic L2c|LINE|L2 -225182 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 129.25-74 chr8 101890595 101891075 + 0.5 NA intron (NM_001040624, intron 4 of 7) L1ME3F|LINE|L1 -93597 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 163.25-5 chr1 239350681 239351284 + 0.5 NA Intergenic Intergenic -35586 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 113.25-7 chr1 168354801 168355151 + 0.5 NA Intergenic L1PA16|LINE|L1 -20548 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 128.25-6 chr1 173903571 173904003 + 0.5 NA TTS (NM_000488) TTS (NM_000488) 13540 NM_001365052 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 132.25-70 chr5 13551167 13551568 + 0.5 NA Intergenic MLT1E1|LTR|ERVL-MaLR 393113 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 134.25-91 chr8 17820532 17820985 + 0.5 NA Intergenic Intergenic -19179 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 124-30 chr2 207572905 207573244 + 0.5 NA intron (NR_163947, intron 5 of 8) intron (NR_163947, intron 5 of 8) 13952 NM_001371428 139.75-76 chr9 116617870 116618307 + 0.5 NA intron (NM_001184735, intron 4 of 4) intron (NM_001184735, intron 4 of 4) 69127 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 130-40 chr2 204668079 204668436 + 0.5 NA intron (NM_205863, intron 1 of 21) MamRep1894|DNA|hAT 122782 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 145-23 chr15 70273169 70273666 + 0.5 NA Intergenic Intergenic -175500 NM_001282980 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 126.25-71 chr5 65152197 65152674 + 0.5 NA intron (NR_135689, intron 25 of 25) intron (NR_135689, intron 25 of 25) 329485 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 153.75-56 chr4 55294830 55295382 + 0.5 NA Intergenic Intergenic -51136 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 130.25-56 chr20 54070275 54070783 + 0.5 NA promoter-TSS (NM_001366296) promoter-TSS (NM_001366296) 65 NM_001366297 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 115.75-14 chr11 73017995 73018227 + 0.5 NA intron (NM_014824, intron 3 of 19) L1MC5|LINE|L1 124207 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 123.5-40 chr16 82699172 82699542 + 0.5 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 10426 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 120-3 chr1 56264777 56265208 + 0.5 NA Intergenic MER5A1|DNA|hAT-Charlie -149971 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 143.25-53 chr4 32023650 32024016 + 0.5 NA intron (NR_125936, intron 1 of 2) LTR48|LTR|ERV1 -1411 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 158.25-44 chr4 177774808 177775140 + 0.5 NA intron (NR_028342, intron 2 of 5) L1MD3|LINE|L1 46217 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 125.25-48 chr21 29576302 29576713 + 0.5 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -19533 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 128.5-88 chr6 129737567 129738079 + 0.5 NA Intergenic L1ME3B|LINE|L1 -27646 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 120.5-6 chr1 207399936 207400409 + 0.5 NA Intergenic Intergenic -54128 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 153.25 chr1 45654545 45654905 + 0.5 NA exon (NM_021639, exon 6 of 13) exon (NM_021639, exon 6 of 13) -8040 NR_026768 728963 Hs.675157 NR_026768 RPS15AP10 RPS15A_4_42 ribosomal protein S15a pseudogene 10 pseudo 124.25-35 chr16 5314038 5314438 + 0.5 NA Intergenic MIR|SINE|MIR -216418 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 158-11 chr11 88319309 88319867 + 0.5 NA intron (NM_001814, intron 2 of 6) Charlie7|DNA|hAT-Charlie 18148 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 125.5-96 chr4 74377667 74378024 + 0.5 NA intron (NM_001432, intron 1 of 4) THE1D|LTR|ERVL-MaLR 12700 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 127-36 chr16 27493052 27493375 + 0.5 NA exon (NM_001286242, exon 17 of 37) exon (NM_001286242, exon 17 of 37) -39820 NR_037158 283888 Hs.660935 NR_037158 ENSG00000259954 IL21R-AS1 - IL21R antisense RNA 1 ncRNA 135.5-17 chr11 74475732 74476201 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -8411 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 116.5-87 chr4 174493679 174494125 + 0.5 NA intron (NM_001256307, intron 4 of 5) Tigger17a|DNA|TcMar-Tigger 28586 NM_001363574 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 134-29 chr16 81235379 81235739 + 0.5 NA Intergenic MIRb|SINE|MIR -3130 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 113.5-35 chr14 54194908 54195304 + 0.5 NA Intergenic Intergenic -201762 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 128.5-33 chr17 62889880 62890233 + 0.5 NA Intergenic Intergenic -54159 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 122.25-39 chr18 7123988 7124317 + 0.5 NA Intergenic MLT1A|LTR|ERVL-MaLR -6355 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 122.25-91 chr8 83185847 83186123 + 0.5 NA Intergenic Intergenic -217773 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 121-22 chr14 62422329 62422794 + 0.5 NA Intergenic L1MEg|LINE|L1 -282588 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 146-17 chr16 72990941 72991323 + 0.5 NA intron (NM_006885, intron 1 of 9) MER44A|DNA|TcMar-Tigger 56996 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 119.75-64 chr4 103971480 103971798 + 0.5 NA Intergenic HERV4_I-int|LTR|ERV1 -251654 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 113.5-87 chr4 72695576 72695833 + 0.5 NA Intergenic L1PA4|LINE|L1 -126483 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 115.5-14 chr11 21732647 21733068 + 0.5 NA Intergenic Intergenic -460228 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 121.25-12 chr11 84724547 84724878 + 0.5 NA intron (NM_001351274, intron 5 of 26) MIR|SINE|MIR -3770 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 137-69 chr8 130297465 130297937 + 0.5 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -1168 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 189.75-51 chrX 155415721 155416290 + 0.5 NA Intergenic Intergenic -32807 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 124-18 chr14 64490646 64491092 + 0.5 NA intron (NM_001304508, intron 1 of 2) intron (NM_001304508, intron 1 of 2) 7123 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 168-25 chr13 60181301 60181828 + 0.5 NA Intergenic Intergenic -17579 NM_001258369 81624 Hs.283127 NM_030932 ENSG00000139734 DIAPH3 AN|AUNA1|DIA2|DRF3|NSDAN|diap3|mDia2 diaphanous related formin 3 protein-coding 125-71 chr4 28403103 28403489 + 0.5 NA Intergenic Intergenic -416286 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 174.5-65 chr4 107393788 107394308 + 0.5 NA Intergenic LTR78B|LTR|ERV1 326186 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 136-34 chr2 76394309 76394676 + 0.5 NA Intergenic MIR|SINE|MIR -591473 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 171.5-69 chr5 40538511 40538918 + 0.5 NA Intergenic L1PB1|LINE|L1 -141201 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 125.75-79 chr9 24955668 24956013 + 0.5 NA Intergenic (ATTTATA)n|Simple_repeat|Simple_repeat -409943 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 122.75-66 chr5 100506370 100506694 + 0.5 NA Intergenic L1MEf|LINE|L1 -28842 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 146-29 chr2 94858976 94859404 + 0.5 NA Intergenic L1ME2z|LINE|L1 -2115 NR_003366 729171 Hs.456852 NR_003366 ENSG00000229089 ANKRD20A8P ANKRD20B ankyrin repeat domain 20 family member A8, pseudogene pseudo 117.75-13 chr11 75947403 75947736 + 0.5 NA intron (NM_003369, intron 6 of 14) MIRc|SINE|MIR 132359 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 162.75-5 chr1 219263435 219263913 + 0.5 NA Intergenic L1PBa|LINE|L1 88705 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 163.25-9 chr10 63976178 63976541 + 0.5 NA Intergenic Intergenic -454469 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 120.5-7 chr1 219625052 219625315 + 0.5 NA Intergenic Intergenic -12038 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 129.25-69 chr7 72491990 72492371 + 0.5 NA Intergenic Intergenic -45037 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 116.25-37 chr17 70787641 70787904 + 0.5 NA Intergenic Intergenic 414407 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 128.75-86 chr8 40102499 40102962 + 0.5 NA Intergenic AluJb|SINE|Alu -50752 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 115-33 chr17 30421013 30421271 + 0.5 NA intron (NM_001304, intron 3 of 20) (TTATTAA)n|Simple_repeat|Simple_repeat 40664 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 114.5-14 chr12 66348691 66348997 + 0.5 NA 3' UTR (NM_001366723, exon 24 of 24) 3' UTR (NM_001366723, exon 24 of 24) 46299 NR_135080 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 147.5-28 chr15 50042489 50043035 + 0.5 NA intron (NR_073597, intron 5 of 26) intron (NR_073597, intron 5 of 26) 70617 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 129.75-16 chr11 81495507 81495814 + 0.5 NA Intergenic MER41A|LTR|ERV1 395176 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 135.75-98 chr7 107833398 107833928 + 0.5 NA Intergenic Intergenic -30430 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 113.25-59 chr18 28206595 28206821 + 0.5 NA Intergenic L1PA13|LINE|L1 -29578 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 141.75-76 chr6 106088285 106088737 + 0.5 NA intron (NM_001198, intron 2 of 6) intron (NM_001198, intron 2 of 6) 2175 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 157.5-47 chr2 80232785 80233158 + 0.5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 71781 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 121.5-92 chr4 140295442 140295774 + 0.5 NA intron (NR_033939, intron 2 of 4) intron (NR_033939, intron 2 of 4) 38300 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 115.25-27 chr12 116112503 116112806 + 0.5 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) 36000 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 113.75-108 chr8 72125286 72125637 + 0.5 NA Intergenic MER50|LTR|ERV1 -49877 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 141-66 chr5 161843279 161843687 + 0.5 NA Intergenic Intergenic -3708 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 138.5-58 chr2 71330407 71330863 + 0.5 NA Intergenic Intergenic -1120 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 114.25-5 chr1 118429468 118429873 + 0.5 NA Intergenic MLT1E1|LTR|ERVL-MaLR -244442 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 142.75-53 chr3 29886005 29886441 + 0.5 NA intron (NM_001003792, intron 8 of 13) L1MC5a|LINE|L1 47933 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 114-69 chr5 100879513 100879894 + 0.5 NA intron (NM_005668, intron 3 of 4) intron (NM_005668, intron 3 of 4) 23579 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 139.25-29 chr14 59149265 59149544 + 0.5 NA Intergenic Intergenic -39263 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 150.5-89 chr7 108127153 108127729 + 0.5 NA intron (NM_007356, intron 1 of 33) L2a|LINE|L2 2920 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 129-55 chr5 35858742 35859110 + 0.5 NA intron (NR_120485, intron 1 of 5) MIRb|SINE|MIR 2035 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 174-9 chr12 60474028 60474473 + 0.5 NA Intergenic HAL1|LINE|L1 784880 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 125-87 chr7 1739655 1740004 + 0.5 NA intron (NR_120508, intron 1 of 1) intron (NR_120508, intron 1 of 1) 2481 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 174.75-15 chr12 131275716 131276245 + 0.5 NA Intergenic Intergenic 21992 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 116.5-99 chr6 51161564 51161981 + 0.5 NA Intergenic L1MB7|LINE|L1 342901 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 131.5-52 chr20 32832061 32832439 + 0.5 NA intron (NM_012325, intron 2 of 6) intron (NM_012325, intron 2 of 6) 12296 NM_012325 22919 Hs.472437 NM_012325 ENSG00000101367 MAPRE1 EB1 microtubule associated protein RP/EB family member 1 protein-coding 161-8 chr10 68817249 68817649 + 0.5 NA Intergenic L2c|LINE|L2 -10082 NM_152709 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 127.25-6 chr1 156495917 156496367 + 0.5 NA intron (NM_005920, intron 1 of 11) intron (NM_005920, intron 1 of 11) 4633 NM_005920 4209 Hs.314327 NM_005920 ENSG00000116604 MEF2D - myocyte enhancer factor 2D protein-coding 129-38 chr2 148545704 148546108 + 0.5 NA Intergenic Intergenic -98845 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 130.75-56 chr4 18217942 18218401 + 0.5 NA Intergenic LTR16C|LTR|ERVL -196296 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 122.75-31 chr17 60448790 60449216 + 0.5 NA intron (NM_006380, intron 12 of 12) L1MC4a|LINE|L1 26514 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 148-53 chr5 116144930 116145357 + 0.5 NA intron (NM_001308080, intron 5 of 6) L2c|LINE|L2 59681 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 113.25-95 chr5 73564576 73564993 + 0.5 NA promoter-TSS (NM_032175) promoter-TSS (NM_032175) 855 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 115-3 chr1 58236622 58237006 + 0.5 NA intron (NM_001353980, intron 1 of 5) MIRc|SINE|MIR 13689 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 173.25-25 chr19 6511787 6512469 + 0.5 NA Intergenic AluSx|SINE|Alu -9280 NM_001289123 10382 Hs.110837 NM_006087 ENSG00000104833 TUBB4A DYT4|TUBB4|beta-5 tubulin beta 4A class IVa protein-coding 198.5 chr1 46641998 46642670 + 0.5 NA intron (NM_001042546, intron 6 of 6) intron (NM_001042546, intron 6 of 6) 23544 NM_001256418 64756 Hs.100874 NM_022745 ENSG00000123472 ATPAF1 ATP11|ATP11p ATP synthase mitochondrial F1 complex assembly factor 1 protein-coding 129.25-27 chr14 60628290 60628735 + 0.5 NA Intergenic Intergenic -10704 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 139.75-68 chr7 120382299 120382735 + 0.5 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 109342 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 122.5-82 chr6 82735739 82736072 + 0.5 NA Intergenic Intergenic 329936 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 119.75-8 chr10 32275719 32276126 + 0.5 NA intron (NM_001272004, intron 10 of 13) AluSg4|SINE|Alu 71236 NM_001272004 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 131-50 chr4 159140670 159141069 + 0.5 NA intron (NM_001351724, intron 1 of 30) AluSx1|SINE|Alu -11975 NR_037459 100500881 NR_037459 ENSG00000264105 MIR3688-1 MIR3688|mir-3688-1 microRNA 3688-1 ncRNA 136.75-21 chr12 32768407 32768705 + 0.5 NA Intergenic MSTC|LTR|ERVL-MaLR -12659 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 128.75-60 chr3 106179152 106179461 + 0.5 NA Intergenic L2|LINE|L2 -309905 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 139-68 chr8 106812758 106813188 + 0.5 NA Intergenic Intergenic -42729 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 144.25-81 chr8 137673353 137673891 + 0.5 NA Intergenic L1MD1|LINE|L1 -260034 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 129-28 chr16 82801097 82801516 + 0.5 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 27987 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 136.5-6 chr1 150960991 150961349 + 0.5 NA exon (NM_012432, exon 16 of 22) exon (NM_012432, exon 16 of 22) 13665 NM_022075 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 119.75-47 chr2 134339573 134339921 + 0.5 NA intron (NM_001371457, intron 7 of 16) L1MC5|LINE|L1 85675 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 116.75-69 chr6 82781511 82781954 + 0.5 NA Intergenic MSTD-int|LTR|ERVL-MaLR 284109 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 176.5-30 chr15 33542707 33543345 + 0.5 NA intron (NM_001243996, intron 7 of 102) intron (NM_001243996, intron 7 of 102) 232059 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 127.5-31 chr13 112179356 112179694 + 0.5 NA Intergenic Intergenic -17808 NR_108094 101928698 Hs.528451 NR_108094 LINC01070 - long intergenic non-protein coding RNA 1070 ncRNA 149.75-70 chr8 133061113 133061638 + 0.5 NA intron (NM_001045557, intron 1 of 7) MIRb|SINE|MIR -1021 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 120.75-62 chr3 26103675 26104073 + 0.5 NA Intergenic Intergenic -230179 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 127-14 chr11 43552217 43552582 + 0.5 NA Intergenic AluSx1|SINE|Alu -7257 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 126.75-21 chr14 26194515 26194913 + 0.5 NA Intergenic Intergenic 358716 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 203.25-14 chr11 114113093 114113674 + 0.5 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 50172 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 137.25-80 chr8 129025551 129026003 + 0.5 NA Intergenic MER50B|LTR|ERV1 -59776 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 135.75-15 chr10 55817882 55818154 + 0.5 NA Intergenic L1M4b|LINE|L1 -190076 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 126.75-81 chr6 11282197 11282669 + 0.5 NA intron (NM_001142393, intron 2 of 7) L2a|LINE|L2 -49751 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 138 chr1 7497118 7497633 + 0.5 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -107621 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 120.75 chr1 64026906 64027267 + 0.5 NA intron (NM_005012, intron 2 of 8) intron (NM_005012, intron 2 of 8) 85119 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 117.75-73 chr6 125308379 125308841 + 0.5 NA Intergenic MIRb|SINE|MIR -6643 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 167.25-85 chrX 53295870 53296475 + 0.5 NA intron (NM_001111125, intron 1 of 14) AluSx1|SINE|Alu -14588 NM_015075 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 123.75-73 chr3 94915243 94915667 + 0.5 NA Intergenic Intergenic -22808 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 113-53 chr2 213752041 213752371 + 0.5 NA intron (NR_047660, intron 9 of 14) HAL1ME|LINE|L1 -5861 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 135.75-7 chr1 181053575 181053884 + 0.5 NA intron (NM_001195000, intron 5 of 5) intron (NM_001195000, intron 5 of 5) 20304 NM_001195000 3140 Hs.13500 NM_001531 ENSG00000153029 MR1 HLALS major histocompatibility complex, class I-related protein-coding 121-26 chr17 29671591 29672062 + 0.5 NA intron (NM_033389, intron 8 of 14) intron (NM_033389, intron 8 of 14) -50403 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 127.5-78 chr3 29248314 29248795 + 0.5 NA Intergenic DNA1_Mam|DNA|TcMar 32385 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 120.5-10 chr10 21336404 21336755 + 0.5 NA Intergenic Intergenic 36371 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 159.75-68 chr8 135479203 135479810 + 0.5 NA intron (NM_006558, intron 1 of 8) MLT1A0|LTR|ERVL-MaLR 22050 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 119.25-103 chr9 89339388 89339840 + 0.5 NA intron (NM_001354698, intron 8 of 15) intron (NM_001354698, intron 8 of 15) 20763 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 119.75-52 chr22 27545510 27545975 + 0.5 NA Intergenic Intergenic 235091 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 155.25-5 chr10 43057784 43058094 + 0.5 NA Intergenic Intergenic -19088 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 152.5-16 chr10 68744445 68744973 + 0.5 NA intron (NR_104262, intron 6 of 23) intron (NR_104262, intron 6 of 23) -10463 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 113.5-16 chr10 54543721 54544088 + 0.5 NA intron (NM_001142771, intron 2 of 34) MER65C|LTR|ERV1 57674 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 123.25-60 chr4 120437282 120437656 + 0.5 NA Intergenic Intergenic -370621 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 142.25-67 chr7 88543880 88544253 + 0.5 NA Intergenic HUERS-P3-int|LTR|ERV1 -215634 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 127.75-87 chr7 25171346 25171751 + 0.5 NA intron (NM_138811, intron 2 of 9) L1MEd|LINE|L1 8806 NM_001371352 156.5-6 chr10 25860834 25861285 + 0.5 NA Intergenic Intergenic 72651 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 211-34 chr8 42732584 42733227 + 0.5 NA intron (NM_001347717, intron 6 of 6) intron (NM_001347717, intron 6 of 6) 35529 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 114.5-23 chr15 85903806 85904206 + 0.5 NA Intergenic Intergenic 78371 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 141-45 chr2 222302595 222303044 + 0.5 NA intron (NR_161172, intron 1 of 1) CpG -3821 NM_181457 5077 Hs.42146 NM_000438 ENSG00000135903 PAX3 CDHS|HUP2|WS1|WS3 paired box 3 protein-coding 149.5-102 chr7 135117215 135117595 + 0.5 NA intron (NM_001345851, intron 10 of 10) intron (NM_001345851, intron 10 of 10) -30667 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 127.75-102 chr9 4409757 4410252 + 0.5 NA Intergenic AluSz6|SINE|Alu -80464 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 118.75-47 chr2 25217828 25218203 + 0.5 NA Intergenic L1ME4a|LINE|L1 13702 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 116.25-83 chr7 39454466 39454879 + 0.5 NA intron (NM_001370959, intron 8 of 9) (AT)n|Simple_repeat|Simple_repeat -48326 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 157 chr1 26927296 26927768 + 0.5 NA intron (NM_006600, intron 2 of 8) AluSg|SINE|Alu 5789 NM_006600 10726 Hs.263812 NM_006600 ENSG00000090273 NUDC HNUDC|MNUDC|NPD011 nuclear distribution C, dynein complex regulator protein-coding 146.25-19 chr12 8051193 8051561 + 0.5 NA intron (NM_018416, intron 10 of 10) AluSz6|SINE|Alu 14982 NM_001326477 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 167.25-84 chr9 124450612 124451226 + 0.5 NA Intergenic Intergenic -35477 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 119-52 chr3 80229364 80229827 + 0.5 NA Intergenic Intergenic -461597 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 149-8 chr11 21389101 21389670 + 0.5 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 719799 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 114.25-16 chr11 29376740 29377168 + 0.5 NA Intergenic L2|LINE|L2 -217459 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 162.75-52 chr4 73435801 73436321 + 0.5 NA promoter-TSS (NM_001134) promoter-TSS (NM_001134) -160 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 139.75-6 chr1 150725034 150725314 + 0.5 NA Intergenic MIR3|SINE|MIR -4279 NM_001199829 84072 Hs.298312 NM_032132 ENSG00000143452 HORMAD1 CT46|NOHMA HORMA domain containing 1 protein-coding 172.75-13 chr17 72658980 72659545 + 0.5 NA intron (NM_001352692, intron 7 of 9) L2c|LINE|L2 -18790 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 120.5-96 chr7 7412748 7413118 + 0.5 NA intron (NM_001037763, intron 27 of 34) MIRb|SINE|MIR 122940 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 155-26 chr2 98445527 98445862 + 0.5 NA promoter-TSS (NM_001351427) promoter-TSS (NM_001351427) -316 NM_001351429 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 133.25-80 chr8 4422039 4422442 + 0.5 NA intron (NM_033225, intron 2 of 69) L1MD1|LINE|L1 572674 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 177.25-8 chr11 68101801 68102406 + 0.5 NA intron (NM_001277, intron 1 of 11) AluSx1|SINE|Alu 19285 NM_001277 1119 Hs.77221 NM_001277 ENSG00000110721 CHKA CHK|CK|CKI|EK choline kinase alpha protein-coding 144-50 chr4 49109409 49109842 + 0.5 NA Intergenic (CATTC)n|Satellite|Satellite 122983 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 134.5-51 chr21 26931789 26932209 + 0.5 NA intron (NM_007038, intron 6 of 7) intron (NM_007038, intron 6 of 7) -21962 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 123.5-33 chr14 35853518 35853862 + 0.5 NA intron (NM_032352, intron 4 of 9) AluJo|SINE|Alu 27352 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 119.25-86 chr7 48489693 48490003 + 0.5 NA intron (NM_152701, intron 48 of 61) intron (NM_152701, intron 48 of 61) 318390 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 133-27 chr16 61542012 61542404 + 0.5 NA Intergenic Intergenic -486442 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 198-43 chr6 52571490 52571928 + 0.5 NA intron (NM_012288, intron 1 of 10) intron (NM_012288, intron 1 of 10) 5351 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 118-52 chr5 16594125 16594577 + 0.5 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -21575 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 117.5-42 chr2 11459767 11460104 + 0.5 NA intron (NM_001278277, intron 1 of 8) intron (NM_001278277, intron 1 of 8) 6226 NR_103490 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 123.5-70 chr3 152245370 152245744 + 0.5 NA Intergenic Intergenic -23372 NM_001314057 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 118.25-88 chr6 43962542 43962956 + 0.5 NA Intergenic L1MB7|LINE|L1 -37836 NR_160954 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 147.5-22 chr12 124827413 124827852 + 0.5 NA intron (NR_160424, intron 1 of 11) L2a|LINE|L2 12039 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 123.5-85 chr5 44133914 44134405 + 0.5 NA Intergenic L1M2|LINE|L1 -254573 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 122-54 chr4 31325310 31325662 + 0.5 NA Intergenic Intergenic 154342 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 117.5-40 chr18 60116308 60116595 + 0.5 NA Intergenic L1MA4A|LINE|L1 216455 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 136-66 chr8 84196523 84196888 + 0.5 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 12039 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 144.75-40 chr2 48783649 48784186 + 0.5 NA Intergenic L1MB7|LINE|L1 -28193 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 122.5-74 chr5 110753711 110754018 + 0.5 NA intron (NM_138773, intron 5 of 7) intron (NM_138773, intron 5 of 7) 14857 NM_138773 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 178.5-91 chr8 135540336 135540747 + 0.5 NA intron (NM_006558, intron 2 of 8) HAL1|LINE|L1 83085 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 113.25-4 chr1 78712864 78713311 + 0.5 NA Intergenic MamRTE1|LINE|RTE-BovB 63256 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 140.5-59 chr3 19256376 19256849 + 0.5 NA intron (NM_144633, intron 2 of 15) LTR89|LTR|ERVL? 58319 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 149.5-38 chr16 28289831 28290305 + 0.5 NA Intergenic AluJb|SINE|Alu -2457 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 143-12 chr11 39104313 39104840 + 0.5 NA Intergenic L1MA3|LINE|L1 455718 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 144.5-42 chr15 63188228 63188716 + 0.5 NA Intergenic MLT1K|LTR|ERVL-MaLR -1134 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 169.5-29 chr15 80924664 80925200 + 0.5 NA intron (NM_001293304, intron 18 of 29) intron (NM_001293304, intron 18 of 29) 64887 NR_126328 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 142.75-41 chr2 66497310 66497853 + 0.5 NA intron (NM_002398, intron 7 of 12) intron (NM_002398, intron 7 of 12) -57251 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 122.75-51 chr21 45693608 45694024 + 0.5 NA intron (NM_001348238, intron 2 of 16) L1MEg|LINE|L1 24942 NM_001348241 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 134.25-89 chr7 104149587 104150003 + 0.5 NA intron (NM_002553, intron 12 of 13) intron (NM_002553, intron 12 of 13) 58218 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 133.75-38 chr2 32500352 32500687 + 0.5 NA intron (NM_016252, intron 46 of 73) AluSx3|SINE|Alu -31634 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 126.25-65 chr4 77711972 77712314 + 0.5 NA Intergenic Intergenic 106921 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 124-53 chr5 4872185 4872569 + 0.5 NA Intergenic Intergenic 98896 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 136.75-20 chr12 2830240 2830585 + 0.5 NA non-coding (NR_130744, exon 13 of 14) non-coding (NR_130744, exon 13 of 14) 4623 NM_031474 83714 Hs.530816 NM_031474 ENSG00000053702 NRIP2 - nuclear receptor interacting protein 2 protein-coding 193.75-46 chr8 135415299 135415929 + 0.5 NA Intergenic Intergenic -41842 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 137.25-66 chr6 39102522 39102897 + 0.5 NA Intergenic Intergenic 12477 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 122.75-45 chr2 76302144 76302520 + 0.5 NA Intergenic Intergenic -591417 NM_001201335 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 136.75-83 chr5 135190156 135190640 + 0.5 NA intron (NR_161235, intron 3 of 5) intron (NR_161235, intron 3 of 5) 57779 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 134-57 chr4 92804694 92805207 + 0.5 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 500551 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 133.25-81 chr8 6464669 6465067 + 0.5 NA intron (NM_001363980, intron 9 of 10) AluSx|SINE|Alu 57715 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 170.5-50 chr3 41627777 41628236 + 0.5 NA intron (NR_136342, intron 28 of 34) L2c|LINE|L2 334097 NR_136342 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 140.5-103 chr6 164476707 164477148 + 0.5 NA Intergenic MER57A-int|LTR|ERV1 345136 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 177-44 chr4 125275154 125275691 + 0.5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -40990 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 118.5-73 chr4 16765905 16766232 + 0.5 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 132577 NM_001290 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 147-21 chr12 88142259 88142830 + 0.5 NA promoter-TSS (NM_025114) promoter-TSS (NM_025114) 237 NM_001366580 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 132.75-11 chr1 216831338 216831864 + 0.5 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -26216 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 151.25-59 chr8 131146812 131147375 + 0.5 NA Intergenic Intergenic -106184 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 150.5-94 chr8 133890361 133890803 + 0.5 NA intron (NR_125424, intron 1 of 3) intron (NR_125424, intron 1 of 3) 4086 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 156.25-65 chr6 62367080 62367556 + 0.5 NA Intergenic L3|LINE|CR1 -81091 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 150-84 chr8 142866385 142866732 + 0.5 NA Intergenic L1P4b|LINE|L1 13262 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 137.5-122 chr8 133171341 133171774 + 0.5 NA Intergenic Intergenic -19482 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 176.25-32 chr18 71112227 71112698 + 0.5 NA Intergenic Intergenic -461508 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 150.5-54 chr20 19922025 19922469 + 0.5 NA intron (NM_001242581, intron 2 of 11) LTR16A2|LTR|ERVL 32681 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 115.75-83 chr6 35121077 35121377 + 0.5 NA 5' UTR (NM_001366331, exon 6 of 11) 5' UTR (NM_001366331, exon 6 of 11) 20112 NM_001366330 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 119.75-67 chr5 13585530 13585900 + 0.5 NA Intergenic Intergenic 358765 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 135-80 chrX 67266947 67267474 + 0.5 NA Intergenic L1MA1|LINE|L1 -276811 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 118.75-70 chr3 82206219 82206644 + 0.5 NA intron (NR_147146, intron 3 of 8) MIR1_Amn|SINE|MIR 220289 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 125.25-57 chr4 25801244 25801639 + 0.5 NA intron (NM_001297592, intron 11 of 23) intron (NM_001297592, intron 11 of 23) 61547 NM_015187 23231 Hs.479384 NM_015187 ENSG00000091490 SEL1L3 Sel-1L3 SEL1L family member 3 protein-coding 121.5-5 chr1 80426578 80426894 + 0.5 NA Intergenic Intergenic -109019 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 152-56 chr5 134875521 134875985 + 0.5 NA intron (NM_024715, intron 1 of 4) AluSx1|SINE|Alu 1983 NM_024715 79770 Hs.741304 NM_024715 ENSG00000113621 TXNDC15 BUG|C5orf14|UNQ335 thioredoxin domain containing 15 protein-coding 156-40 chr2 178483029 178483472 + 0.5 NA intron (NM_019091, intron 1 of 7) AluSx3|SINE|Alu 2793 NM_019091 65977 Hs.41086 NM_019091 ENSG00000116095 PLEKHA3 FAPP1 pleckstrin homology domain containing A3 protein-coding 214.25-42 chr7 46359785 46360424 + 0.5 NA Intergenic Intergenic 337018 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 116-79 chr9 130298381 130298810 + 0.5 NA intron (NM_001291815, intron 7 of 97) intron (NM_001291815, intron 7 of 97) 32835 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 120.5-109 chr8 116589008 116589411 + 0.5 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -62891 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 139.25-72 chr6 126079820 126080345 + 0.5 NA TTS (NR_146804) TTS (NR_146804) 93542 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 139.25 chr1 9354894 9355312 + 0.5 NA intron (NM_025106, intron 1 of 2) intron (NM_025106, intron 1 of 2) 62209 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 237.25-18 chr3 33802876 33803541 + 0.5 NA intron (NM_001256192, intron 1 of 5) intron (NM_001256192, intron 1 of 5) 4578 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 138.5-92 chr6 90691091 90691481 + 0.5 NA Intergenic MER3|DNA|hAT-Charlie -104214 NM_145333 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 125.5-34 chr12 74510127 74510557 + 0.5 NA Intergenic Intergenic -27493 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 138.25-44 chr2 114339695 114339971 + 0.5 NA Intergenic Intergenic -102808 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 150.25-29 chr15 55755305 55755747 + 0.5 NA Intergenic Intergenic -12374 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 127.75-51 chr21 24389304 24389687 + 0.5 NA Intergenic Intergenic -39245 NR_135520 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 166.5-9 chr1 152325168 152325604 + 0.5 NA promoter-TSS (NM_002016) promoter-TSS (NM_002016) -183 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 116.75-27 chr14 87984735 87985011 + 0.5 NA intron (NM_000153, intron 4 of 16) intron (NM_000153, intron 4 of 16) 8309 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 124.5-73 chr3 187065102 187065536 + 0.5 NA intron (NM_173216, intron 5 of 7) intron (NM_173216, intron 5 of 7) 26601 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 117.5-32 chr16 61193153 61193435 + 0.5 NA Intergenic MIR|SINE|MIR -137528 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 124.75-28 chr14 68679307 68679713 + 0.5 NA intron (NM_001321818, intron 10 of 10) MIRc|SINE|MIR -50723 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 130-4 chr10 34034820 34035162 + 0.5 NA Intergenic HERV9NC-int|LTR|ERV1 -262311 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 129.25-83 chr9 34703232 34703631 + 0.5 NA Intergenic AluSx1|SINE|Alu 6705 NM_002989 6366 Hs.57907 NM_002989 ENSG00000137077 CCL21 6Ckine|CKb9|ECL|SCYA21|SLC|TCA4 C-C motif chemokine ligand 21 protein-coding 137.5-41 chr16 8554494 8554887 + 0.5 NA intron (NR_110736, intron 2 of 3) intron (NR_110736, intron 2 of 3) 35148 NM_001146336 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 123-48 chr5 124133823 124134252 + 0.5 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 304483 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 176-20 chr2 86669992 86670553 + 0.5 NA intron (NM_001198954, intron 2 of 7) intron (NM_001198954, intron 2 of 7) -46395 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 138.25-74 chr5 63010851 63011234 + 0.5 NA Intergenic L1MA8|LINE|L1 432223 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 121.5-24 chr12 46277080 46277501 + 0.5 NA Intergenic Intergenic -8247 NM_001278387 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 119.25-107 chrX 94183437 94183778 + 0.5 NA Intergenic L1MC|LINE|L1 509401 NM_173698 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 140.75-25 chr17 9338550 9339053 + 0.5 NA intron (NM_004853, intron 7 of 7) AluY|SINE|Alu -159683 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 117-22 chr14 46798017 46798318 + 0.5 NA Intergenic Intergenic -146386 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 130.25-42 chr18 40364706 40365051 + 0.5 NA Intergenic Intergenic 298592 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 153-13 chr19 3661674 3662283 + 0.5 NA exon (NM_001300849, exon 4 of 17) exon (NM_001300849, exon 4 of 17) -35163 NM_021231 58509 Hs.128425 NM_021231 ENSG00000105298 CACTIN C19orf29|NY-REN-24|fSAPc cactin, spliceosome C complex subunit protein-coding 159.75-26 chr2 100285124 100285522 + 0.5 NA intron (NM_198461, intron 11 of 11) intron (NM_198461, intron 11 of 11) 37410 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 120.75-102 chr8 140674063 140674502 + 0.5 NA intron (NR_148037, intron 31 of 34) intron (NR_148037, intron 31 of 34) -38649 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 118-47 chr4 56426713 56427037 + 0.5 NA intron (NR_156493, intron 1 of 10) L1MB3|LINE|L1 8740 NR_156493 5471 Hs.331420 NM_002703 ENSG00000128059 PPAT ATASE|GPAT|PRAT phosphoribosyl pyrophosphate amidotransferase protein-coding 142.25-59 chr5 104237889 104238197 + 0.5 NA Intergenic L2|LINE|L2 -675254 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 119.25-76 chr5 86448768 86449184 + 0.5 NA Intergenic L2|LINE|L2 166532 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 128.75-18 chr11 126426324 126426744 + 0.5 NA intron (NM_001301097, intron 14 of 15) intron (NM_001301097, intron 14 of 15) 20447 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 127.25-69 chr4 83826105 83826517 + 0.5 NA Intergenic L1P3|LINE|L1 290203 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 117.75-74 chr7 9352309 9352700 + 0.5 NA Intergenic Intergenic -281766 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 151-34 chr19 41760876 41761459 + 0.5 NA intron (NM_002483, intron 2 of 5) intron (NM_002483, intron 2 of 5) 5637 NM_002483 4680 Hs.466814 NM_002483 ENSG00000086548 CEACAM6 CD66c|CEAL|NCA carcinoembryonic antigen related cell adhesion molecule 6 protein-coding 141-25 chr16 3423024 3423471 + 0.5 NA Intergenic AluSx|SINE|Alu 20257 NM_152457 146434 Hs.88630 NM_152457 ENSG00000167981 ZNF597 HIT-4 zinc finger protein 597 protein-coding 140.75-32 chr2 125786611 125787011 + 0.5 NA Intergenic Intergenic 331174 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 114.75-113 chrX 96180513 96180833 + 0.5 NA Intergenic Intergenic 157229 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 167-9 chr12 125321776 125322358 + 0.5 NA intron (NM_001366854, intron 1 of 8) L1ME1|LINE|L1 -4549 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 133.75-50 chr20 36381468 36381833 + 0.5 NA intron (NM_001365621, intron 2 of 12) MIR1_Amn|SINE|MIR 75311 NM_001365621 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 121.75-16 chr12 64932578 64932925 + 0.5 NA intron (NR_146276, intron 3 of 3) L1PBa|LINE|L1 48977 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 194-9 chr11 105027201 105027730 + 0.5 NA intron (NM_033295, intron 2 of 4) intron (NM_033295, intron 2 of 4) -4297 NR_024239 838 Hs.213327 NM_004347 ENSG00000137757 CASP5 ICE(rel)III|ICEREL-III|ICH-3 caspase 5 protein-coding 129-21 chr14 61830392 61830803 + 0.5 NA intron (NM_001367656, intron 1 of 7) L1MEf|LINE|L1 17894 NM_001367661 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 147.75-52 chr3 179532088 179532413 + 0.5 NA Intergenic L1ME2z|LINE|L1 -30630 NM_177989 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 150.75-53 chr4 66945332 66945741 + 0.5 NA Intergenic Intergenic 476464 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 116.5-2 chr1 24541626 24541977 + 0.5 NA TTS (NM_001251977) TTS (NM_001251977) 14223 NR_109781 100506985 Hs.607088 NR_109781 NCMAP-DT - NCMAP divergent transcript ncRNA 129-11 chr10 89669524 89669952 + 0.5 NA Intergenic MLT1J1|LTR|ERVL-MaLR -24166 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 138.75-74 chr8 60976281 60976784 + 0.5 NA Intergenic Intergenic -8784 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 119-35 chr2 11991111 11991519 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -15801 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 125-74 chr4 165135761 165136011 + 0.5 NA Intergenic L2|LINE|L2 -23026 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 117-21 chr13 66788795 66789197 + 0.5 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -36173 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 137.75-20 chr13 94891691 94892114 + 0.5 NA intron (NR_110754, intron 2 of 4) MLT1L|LTR|ERVL-MaLR -68139 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 122.75-79 chr7 140326219 140326466 + 0.5 NA Intergenic Intergenic 72188 NR_156491 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 141.25-40 chr16 84520911 84521469 + 0.5 NA Intergenic Intergenic -16531 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 129-75 chr7 121484239 121484553 + 0.5 NA Intergenic Intergenic -88028 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 133.25-14 chr11 19493964 19494392 + 0.5 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 13051 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 118.25-36 chr15 78054477 78054928 + 0.5 NA intron (NM_144572, intron 1 of 12) L1ME1|LINE|L1 22950 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 136.75-45 chr2 27450124 27450465 + 0.5 NA intron (NM_015662, intron 35 of 47) intron (NM_015662, intron 35 of 47) 7913 NM_001321325 200634 Hs.59509 NM_173853 ENSG00000157992 KRTCAP3 KCP3 keratinocyte associated protein 3 protein-coding 127.5-85 chr3 97556274 97556717 + 0.5 NA intron (NM_001080448, intron 11 of 17) THE1C|LTR|ERVL-MaLR 116888 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 149.75-36 chr21 31091275 31091732 + 0.5 NA Intergenic L1MA4|LINE|L1 -53027 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 134.75-66 chr6 138478621 138478941 + 0.5 NA intron (NM_020464, intron 2 of 6) intron (NM_020464, intron 2 of 6) 20713 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 134.75-45 chr21 29915935 29916348 + 0.5 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 23855 NM_001330993 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 127.5-89 chr4 43574788 43575092 + 0.5 NA Intergenic L1PA4|LINE|L1 -82397 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 121.5-82 chr3 131560800 131561098 + 0.5 NA intron (NM_130808, intron 11 of 15) intron (NM_130808, intron 11 of 15) -57978 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 182.75-6 chr12 115666059 115666636 + 0.5 NA Intergenic Intergenic 482307 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 123.25-34 chr18 49247514 49247859 + 0.5 NA intron (NM_001353214, intron 13 of 17) intron (NM_001353214, intron 13 of 17) -197918 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 120.75-10 chr10 114901747 114902194 + 0.5 NA Intergenic Intergenic -36225 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 135.75-107 chr8 127085385 127085715 + 0.5 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -3329 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 127.25-73 chr4 124179186 124179543 + 0.5 NA Intergenic Intergenic 379070 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 127.5-100 chr5 113899512 113899839 + 0.5 NA Intergenic L2a|LINE|L2 385981 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 121-53 chr4 102539351 102539772 + 0.5 NA intron (NM_003998, intron 5 of 23) intron (NM_003998, intron 5 of 23) -37075 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 114-35 chr14 67649340 67649746 + 0.5 NA 3' UTR (NM_006370, exon 6 of 6) 3' UTR (NM_006370, exon 6 of 6) 25089 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 117.25-31 chr15 60355483 60355837 + 0.5 NA intron (NM_001002857, intron 8 of 13) intron (NM_001002857, intron 8 of 13) 42326 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 140.25-29 chr18 63814740 63815109 + 0.5 NA Intergenic L1PA16|LINE|L1 37147 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 132.5-17 chr11 96018137 96018456 + 0.5 NA intron (NM_032427, intron 2 of 4) L2-1_AMi|LINE|L2 -94089 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 123.75-69 chr3 53046597 53047034 + 0.5 NA promoter-TSS (NM_016329) promoter-TSS (NM_016329) -742 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 114-67 chr4 128757998 128758278 + 0.5 NA Intergenic Intergenic -51562 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 160.25-12 chr11 90945490 90945921 + 0.5 NA Intergenic Intergenic -76503 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 119.5-78 chr3 48279615 48279982 + 0.5 NA Intergenic Intergenic 11880 NR_134638 101060195 Hs.670746 NR_134638 FCF1P2 - FCF1 pseudogene 2 pseudo 152.25-25 chr15 63389692 63390120 + 0.5 NA promoter-TSS (NR_120375) promoter-TSS (NR_120375) -324 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 141.75-14 chr12 426694 427145 + 0.5 NA intron (NM_001130148, intron 3 of 10) ERV3-16A3_I-int|LTR|ERVL 25275 NM_001130146 84318 Hs.631656 NM_032358 ENSG00000120647 CCDC77 - coiled-coil domain containing 77 protein-coding 113-87 chr6 83077115 83077408 + 0.5 NA intron (NM_015018, intron 1 of 38) FLAM_C|SINE|Alu 9595 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 180.75-49 chr5 44773381 44773892 + 0.5 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 35157 NR_109864 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 125.75-77 chr8 112906590 112906975 + 0.5 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 263289 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 134-76 chr8 123295649 123296114 + 0.5 NA Intergenic L1MB2|LINE|L1 -20340 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 120.5-103 chr8 72885833 72886168 + 0.5 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -122864 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 155.5-47 chr18 59290313 59290930 + 0.5 NA Intergenic L1MD2|LINE|L1 -17167 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 137.5-23 chr12 84854876 84855224 + 0.5 NA Intergenic L1MA2|LINE|L1 57749 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 122.5-35 chr16 80778902 80779310 + 0.5 NA intron (NM_152342, intron 1 of 6) (AAGG)n|Simple_repeat|Simple_repeat 25492 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 117.75-17 chr12 119364153 119364505 + 0.5 NA intron (NM_178499, intron 1 of 13) L1ME1|LINE|L1 29600 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 123.5-26 chr12 57379860 57380214 + 0.5 NA intron (NM_001351217, intron 1 of 21) intron (NM_001351217, intron 1 of 21) -37581 NM_001351205 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 142.25-14 chr12 6175997 6176385 + 0.5 NA Intergenic L1MC5|LINE|L1 -23755 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 117.75-52 chr3 31350792 31351130 + 0.5 NA Intergenic Intergenic -181964 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 124.25-8 chr1 208744013 208744363 + 0.5 NA Intergenic L1MC1|LINE|L1 15500 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 166.5-41 chr15 83274750 83275255 + 0.5 NA intron (NM_001717, intron 1 of 4) MIRb|SINE|MIR 8455 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 126.5-95 chr5 118548151 118548404 + 0.5 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 13840 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 170.75-50 chr3 109572257 109572720 + 0.5 NA Intergenic Intergenic -30340 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 122.25-15 chr11 62524284 62524637 + 0.5 NA exon (NM_001620, exon 5 of 5) exon (NM_001620, exon 5 of 5) 21204 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 113.75-97 chr7 27236215 27236512 + 0.5 NA Intergenic Intergenic -6439 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 193.25-3 chr1 194291846 194292349 + 0.5 NA Intergenic Intergenic 987352 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 116.5-60 chr2 111524512 111524835 + 0.5 NA Intergenic Intergenic -29512 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 151-39 chr20 31306602 31307005 + 0.5 NA intron (NM_001037731, intron 1 of 1) intron (NM_001037731, intron 1 of 1) 1782 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 131.5-94 chr8 110711434 110711803 + 0.5 NA Intergenic L2|LINE|L2 315815 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 143.25-2 chr1 48507202 48507581 + 0.5 NA Intergenic MLT2B1|LTR|ERVL -35183 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 116-48 chr4 46580774 46581062 + 0.5 NA Intergenic Intergenic -190790 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 125.75-50 chr3 46172799 46173064 + 0.5 NA Intergenic L1MA9|LINE|L1 35382 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 148.25-47 chr21 30614101 30614534 + 0.5 NA promoter-TSS (NM_181602) promoter-TSS (NM_181602) -413 NM_181602 337966 Hs.194301 NM_181602 ENSG00000184724 KRTAP6-1 C21orf103|KAP6.1 keratin associated protein 6-1 protein-coding 128.75-21 chr12 103796785 103797167 + 0.5 NA exon (NM_001031701, exon 6 of 14) exon (NM_001031701, exon 6 of 14) 44258 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 113.5-131 chr9 103583566 103583974 + 0.5 NA Intergenic Intergenic -258737 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 143.75-79 chr7 85781344 85781654 + 0.5 NA Intergenic Intergenic 360377 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 155-56 chr7 65231853 65232427 + 0.5 NA intron (NR_146906, intron 17 of 17) MER4A1_|LTR|ERV1 91110 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 147.75-87 chr9 16093152 16093496 + 0.5 NA Intergenic Intergenic 159783 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 144-78 chr9 84462209 84462672 + 0.5 NA Intergenic Intergenic -93713 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 131.25-44 chr2 54625789 54626165 + 0.5 NA exon (NM_003128, exon 12 of 36) exon (NM_003128, exon 12 of 36) 67583 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 119.5-68 chr20 3323516 3323853 + 0.5 NA intron (NM_001009984, intron 14 of 36) intron (NM_001009984, intron 14 of 36) 83978 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 191.5-31 chr2 18965847 18966484 + 0.5 NA Intergenic L1PA16|LINE|L1 60806 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 126.5-111 chr7 88758766 88759161 + 0.5 NA promoter-TSS (NM_181646) promoter-TSS (NM_181646) -737 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 118-76 chr8 138576148 138576433 + 0.5 NA Intergenic Intergenic -78560 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 126.5-103 chr6 156129810 156130230 + 0.5 NA Intergenic L1MEi|LINE|L1 183223 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 137.75-49 chr2 239807128 239807611 + 0.5 NA Intergenic Intergenic 44509 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 157.75-15 chr11 32311985 32312614 + 0.5 NA Intergenic Intergenic 88101 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 154.75-42 chr22 33322956 33323295 + 0.5 NA intron (NM_133642, intron 10 of 14) AluSc8|SINE|Alu 113544 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 124-15 chr12 11776048 11776346 + 0.5 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 126343 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 122.75-49 chr20 40746216 40746643 + 0.5 NA Intergenic MIRc|SINE|MIR -31806 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 183.5-53 chr4 37555667 37556102 + 0.5 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) -28349 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 121.75-64 chr4 101527591 101527834 + 0.5 NA Intergenic Intergenic 179935 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 129.75-14 chr10 101157270 101157713 + 0.5 NA Intergenic Helitron3Na_Mam|RC|Helitron -16225 NR_130724 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 114.25-67 chr21 43268378 43268747 + 0.5 NA Intergenic Intergenic 63477 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 141.5-3 chr1 92971100 92971468 + 0.5 NA Intergenic Intergenic -9762 NM_001252269 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 151.25-42 chr4 167986793 167987301 + 0.5 NA Intergenic L1M2|LINE|L1 -105490 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 129.75-82 chr8 123896857 123897157 + 0.5 NA intron (NM_001039112, intron 1 of 40) L2|LINE|L2 45020 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 156.75-40 chr18 9220230 9220604 + 0.5 NA intron (NM_001204056, intron 6 of 11) intron (NM_001204056, intron 6 of 11) 82854 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 144.75-89 chr8 133775580 133776096 + 0.5 NA non-coding (NR_125422, exon 3 of 3) non-coding (NR_125422, exon 3 of 3) 1514 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 114.75-63 chr3 100118954 100119328 + 0.5 NA intron (NM_001167924, intron 1 of 9) intron (NM_001167924, intron 1 of 9) 4211 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 137.25-41 chr19 37437617 37437909 + 0.5 NA intron (NM_152484, intron 3 of 5) L1MA3|LINE|L1 29681 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 134-12 chr1 245174926 245175391 + 0.5 NA intron (NM_018012, intron 2 of 14) LFSINE_Vert|SINE|tRNA 20173 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 145-30 chr19 40351131 40351664 + 0.5 NA intron (NM_012268, intron 1 of 12) AluSx1|SINE|Alu 2702 NM_012268 23646 Hs.257008 NM_012268 ENSG00000105223 PLD3 AD19|HU-K4|HUK4|SCA46 phospholipase D family member 3 protein-coding 113-8 chr1 147661579 147661822 + 0.5 NA intron (NM_001323625, intron 1 of 8) Tigger1|DNA|TcMar-Tigger 8824 NR_136634 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 129.75-52 chr3 36311990 36312457 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -68264 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 142-21 chr15 87765932 87766292 + 0.5 NA Intergenic Intergenic 180156 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 147.75-25 chr14 81489598 81490061 + 0.5 NA intron (NM_005065, intron 13 of 20) intron (NM_005065, intron 13 of 20) -39672 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 132.75-27 chr11 106308968 106309360 + 0.5 NA Intergenic L1ME1|LINE|L1 57757 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 136.75-66 chr3 189468581 189469126 + 0.5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -127893 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 139.25-66 chr5 30862033 30862464 + 0.5 NA Intergenic L1ME3A|LINE|L1 -331438 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 159.5-57 chr3 64677454 64677838 + 0.5 NA intron (NM_001318781, intron 3 of 38) MIRb|SINE|MIR -7224 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 163-48 chr6 163693951 163694356 + 0.5 NA Intergenic LTR78|LTR|ERV1 -22669 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 160-6 chr11 11996888 11997453 + 0.5 NA intron (NM_015881, intron 4 of 7) intron (NM_015881, intron 4 of 7) 11469 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 117-25 chr14 59785269 59785697 + 0.5 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 85293 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 117.75-6 chr10 26286778 26287198 + 0.5 NA intron (NM_000818, intron 13 of 16) intron (NM_000818, intron 13 of 16) 70214 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 123.5-120 chrX 120623305 120623783 + 0.5 NA Intergenic Intergenic 6510 NM_001011551 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 131.25-25 chr11 130965779 130966175 + 0.5 NA Intergenic L1PA16|LINE|L1 -49490 NM_001347924 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 118.25-28 chr14 52738496 52738746 + 0.5 NA intron (NM_001130701, intron 2 of 11) MER34|LTR|ERV1 8455 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 154-20 chr14 58411533 58411894 + 0.5 NA intron (NR_130752, intron 1 of 2) AluSx|SINE|Alu 15529 NM_001304486 26520 Hs.440525 NM_012460 ENSG00000100575 TIMM9 TIM9|TIM9A translocase of inner mitochondrial membrane 9 protein-coding 160-42 chr7 22762418 22762896 + 0.5 NA Intergenic Intergenic -35037 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 120-7 chr1 88258488 88258745 + 0.5 NA Intergenic Intergenic -425528 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 142.25-58 chr5 97090160 97090673 + 0.5 NA Intergenic Intergenic 52195 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 163.25-7 chr10 32481471 32481842 + 0.5 NA intron (NR_109826, intron 9 of 16) L1M4c|LINE|L1 35516 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 123.25-80 chr9 31054502 31054843 + 0.5 NA Intergenic Intergenic 326818 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 137.25-63 chr5 88837676 88838179 + 0.5 NA intron (NM_001131005, intron 2 of 10) MIR|SINE|MIR -10739 NM_001364342 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 147.75-3 chr1 82242991 82243542 + 0.5 NA Intergenic Intergenic 440813 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 118.75-43 chr18 12814764 12815225 + 0.5 NA intron (NM_080423, intron 6 of 8) AluSz|SINE|Alu 25968 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 147.75-24 chr14 74650546 74650986 + 0.5 NA Intergenic Arthur1|DNA|hAT-Tip100 -38529 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 132-4 chr1 209178287 209178679 + 0.5 NA Intergenic L1PB1|LINE|L1 -146973 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 146.25-26 chr15 36446671 36447186 + 0.5 NA Intergenic MIRc|SINE|MIR -132698 NM_001321760 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 170-42 chr4 102313059 102313535 + 0.5 NA intron (NM_022154, intron 2 of 7) MIR|SINE|MIR 11015 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 143.25-5 chr1 220531544 220531864 + 0.5 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 3521 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 137-48 chr3 100607442 100607806 + 0.5 NA Intergenic Intergenic -1977 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 155.5-37 chr16 12967936 12968393 + 0.5 NA intron (NM_001145204, intron 2 of 4) AluSx|SINE|Alu 66566 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 135.5-27 chr14 20163124 20163625 + 0.5 NA Intergenic L1M2|LINE|L1 19638 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 132.25-40 chr18 60904921 60905333 + 0.5 NA Intergenic Intergenic -428303 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 114.75-75 chr4 179232613 179232904 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -1324822 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 140.25-87 chr7 83686431 83686898 + 0.5 NA Intergenic Intergenic -37525 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 135.75-88 chr6 144752053 144752525 + 0.5 NA intron (NM_007124, intron 55 of 73) intron (NM_007124, intron 55 of 73) 346634 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 128.25-77 chr7 28454786 28455125 + 0.5 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 19340 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 191.25-11 chr10 104083486 104084137 + 0.5 NA intron (NM_000494, intron 1 of 55) intron (NM_000494, intron 1 of 55) 2069 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 119.25-91 chr7 103655188 103655548 + 0.5 NA intron (NM_005045, intron 12 of 64) intron (NM_005045, intron 12 of 64) -209161 NM_206884 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 114.5-110 chr9 16099726 16100081 + 0.5 NA Intergenic Intergenic 153204 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 113.5-28 chr12 88768235 88768594 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR -187941 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 128.75-90 chr8 138357560 138357949 + 0.5 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 139507 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 138-13 chr12 17875000 17875367 + 0.5 NA Intergenic Intergenic 201884 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 163.75 chr1 44446102 44446538 + 0.5 NA intron (NM_001319957, intron 1 of 13) L3b|LINE|CR1 22319 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 118.25-71 chr4 130650855 130651238 + 0.5 NA Intergenic L1PA8|LINE|L1 274685 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 137.25-86 chrX 99495082 99495513 + 0.5 NA Intergenic MLT1E3|LTR|ERVL-MaLR 914976 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 115.25-34 chr15 90615324 90615637 + 0.5 NA intron (NM_001042574, intron 7 of 14) intron (NM_001042574, intron 7 of 14) -44754 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 132.25-32 chr15 68664302 68664683 + 0.5 NA intron (NM_006091, intron 2 of 11) AluY|SINE|Alu 22989 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 113-11 chr10 62795061 62795352 + 0.5 NA Intergenic Intergenic -9514 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 133.75-58 chr3 165989899 165990402 + 0.5 NA Intergenic L1PA5|LINE|L1 -152727 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 169-7 chr10 24026714 24027071 + 0.5 NA intron (NM_001098500, intron 2 of 18) L1ME1|LINE|L1 -181899 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 133.75-55 chr3 39901807 39902151 + 0.5 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 92319 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 155-55 chr7 32157898 32158351 + 0.5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -86688 NM_001322056 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 161.5-4 chr1 75646679 75647151 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -30752 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 148.75-35 chr2 117740922 117741323 + 0.5 NA Intergenic Intergenic -73569 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 113.5-2 chr1 55568900 55569341 + 0.5 NA Intergenic Intergenic 343479 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 144.75-10 chr10 16592022 16592557 + 0.5 NA 3' UTR (NM_012425, exon 9 of 9) 3' UTR (NM_012425, exon 9 of 9) -70410 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 123.25-4 chr1 99150639 99150894 + 0.5 NA Intergenic L2a|LINE|L2 -113526 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 134.5-90 chr7 64507229 64507673 + 0.5 NA Intergenic L1MA7|LINE|L1 55620 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 129.5-3 chr1 44828243 44828734 + 0.5 NA intron (NM_003738, intron 12 of 21) intron (NM_003738, intron 12 of 21) 14456 NM_001166292 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 143.25-9 chr10 93917953 93918475 + 0.5 NA Intergenic Intergenic 24236 NR_144337 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 167.75-51 chr4 74332042 74332571 + 0.5 NA Intergenic Intergenic 23836 NR_073114 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 210.25-32 chr4 72773004 72773482 + 0.5 NA Intergenic Intergenic -204022 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 131.25-47 chr2 208746078 208746404 + 0.5 NA intron (NR_136588, intron 3 of 5) L1ME1|LINE|L1 203599 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 179.25-16 chr15 42173433 42174052 + 0.5 NA exon (NM_001301138, exon 12 of 26) exon (NM_001301138, exon 12 of 26) -17106 NR_033151 255189 Hs.231873 NM_213600 ENSG00000168907 PLA2G4F PLA2G4FZ phospholipase A2 group IVF protein-coding 169.25-46 chr4_GL000008v2_random 584 1197 + 0.5 NA Intergenic AluYj4|SINE|Alu 177281 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 159.75-73 chrX 108871833 108872288 + 0.5 NA Intergenic Intergenic 135520 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 161.5-86 chr8 109755643 109756175 + 0.5 NA Intergenic L1PA15|LINE|L1 -64118 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 119.75-37 chr17 56002121 56002528 + 0.5 NA Intergenic Intergenic -151151 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 133.5-109 chr8 17103206 17103588 + 0.5 NA intron (NR_146233, intron 10 of 15) intron (NR_146233, intron 10 of 15) -53085 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 126.25-14 chr10 73747742 73748067 + 0.5 NA intron (NM_198597, intron 2 of 22) AluSp|SINE|Alu 3532 NM_198597 9632 Hs.81964 NM_004922 ENSG00000176986 SEC24C - SEC24 homolog C, COPII coat complex component protein-coding 120-90 chr8 129778907 129779378 + 0.5 NA intron (NM_031415, intron 1 of 13) L1PA13|LINE|L1 7482 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 136.75-89 chr7 7366308 7366739 + 0.5 NA intron (NM_001037763, intron 33 of 34) intron (NM_001037763, intron 33 of 34) 111369 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 136-15 chr12 119293240 119293582 + 0.5 NA intron (NR_024246, intron 2 of 3) intron (NR_024246, intron 2 of 3) 9969 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 158-67 chr8 130067598 130068005 + 0.5 NA intron (NM_001362925, intron 27 of 29) intron (NM_001362925, intron 27 of 29) 16967 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 119.25-19 chr12 64814230 64814501 + 0.5 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) -10282 NM_001330186 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 120.5-76 chr4 87794987 87795338 + 0.5 NA Intergenic L1PA3|LINE|L1 -4392 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 125-43 chr17 80908697 80909149 + 0.5 NA exon (NM_001163034, exon 17 of 30) exon (NM_001163034, exon 17 of 30) 62290 NR_148968 400627 Hs.591201 NR_148968 ENSG00000261924 LOC400627 - uncharacterized LOC400627 ncRNA 113.25-64 chr2 30725490 30725853 + 0.5 NA intron (NM_144575, intron 22 of 22) L3|LINE|CR1 81775 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 115-12 chr10 55854959 55855253 + 0.5 NA Intergenic Intergenic -227164 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 161.25-79 chr9 37249594 37250202 + 0.5 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 129300 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 132.5-108 chr7 109117765 109118070 + 0.5 NA Intergenic L1MEi|LINE|L1 -233330 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 171.75-60 chr8 119920417 119920784 + 0.5 NA intron (NM_001283012, intron 1 of 6) L2c|LINE|L2 46878 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 129.25-64 chr6 16534971 16535305 + 0.5 NA intron (NM_000332, intron 5 of 8) intron (NM_000332, intron 5 of 8) 225046 NR_152113 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 186-29 chr2 126258330 126258844 + 0.5 NA Intergenic Intergenic -140602 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 122.75-26 chr16 1329220 1329662 + 0.5 NA Intergenic AluY|SINE|Alu -4204 NM_001199097 8938 Hs.458427 NM_003933 ENSG00000007516 BAIAP3 BAP3 BAI1 associated protein 3 protein-coding 150.75-57 chr5 41369606 41370112 + 0.5 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -108390 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 120.75-27 chr14 21740652 21741037 + 0.5 NA Intergenic Intergenic -69827 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 167.5-16 chr12 12987709 12988078 + 0.5 NA intron (NM_015987, intron 2 of 3) AluSz6|SINE|Alu 8056 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 152.75-58 chr6 28333037 28333507 + 0.5 NA intron (NM_001243242, intron 1 of 3) intron (NM_001243242, intron 1 of 3) 2862 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 136.25-73 chr7 96172585 96173089 + 0.5 NA intron (NM_001160210, intron 11 of 17) AluY|SINE|Alu 46919 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 115.25-56 chr20 4073719 4074159 + 0.5 NA Intergenic AluJr4|SINE|Alu -58381 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 128-21 chr17 522390 522666 + 0.5 NA intron (NM_001128159, intron 19 of 21) intron (NM_001128159, intron 19 of 21) -76588 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 124.25-59 chr22 22847897 22848244 + 0.5 NA Intergenic Intergenic 25294 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 115.5-95 chr8 61112512 61112879 + 0.5 NA Intergenic Intergenic -144947 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 150.25-60 chr5 30806612 30807104 + 0.5 NA Intergenic Intergenic -386828 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 136.75-29 chr14 38539342 38539828 + 0.5 NA Intergenic Intergenic -283492 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 117.75-18 chr12 126099392 126099667 + 0.5 NA intron (NR_110053, intron 2 of 4) intron (NR_110053, intron 2 of 4) 3537 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 129.5-7 chr1 223285042 223285393 + 0.5 NA intron (NM_017982, intron 3 of 8) intron (NM_017982, intron 3 of 8) 78959 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 149-36 chr3 32960221 32960604 + 0.5 NA Intergenic Intergenic 8768 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 126.25-85 chr7 83898201 83898582 + 0.5 NA Intergenic Intergenic -249252 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 113.75-59 chr2 162450519 162450877 + 0.5 NA intron (NM_033272, intron 6 of 15) Charlie29a|DNA|hAT-Charlie 106330 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 144.75-33 chr18 70673295 70673854 + 0.5 NA Intergenic Intergenic -22620 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 113.75-71 chr3 48542394 48542803 + 0.5 NA intron (NM_001317135, intron 4 of 13) HAL1|LINE|L1 7423 NR_106881 102465494 NR_106881 ENSG00000278799 MIR6823 hsa-mir-6823 microRNA 6823 ncRNA 114.75-19 chr12 24313964 24314291 + 0.5 NA intron (NM_152989, intron 3 of 17) L2|LINE|L2 90856 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 150-46 chr21 28660013 28660521 + 0.5 NA Intergenic L1M5|LINE|L1 120949 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 166.5-47 chr18 12772488 12772981 + 0.5 NA Intergenic AluSz|SINE|Alu -23312 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 135.5-3 chr1 147275290 147275652 + 0.5 NA intron (NM_001348462, intron 13 of 22) intron (NM_001348462, intron 13 of 22) 32329 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 113.5-132 chrX 49709962 49710300 + 0.5 NA Intergenic MER34C_|LTR|ERV1 -14147 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 146.25-23 chr14 61787407 61787821 + 0.5 NA intron (NM_003082, intron 8 of 9) MER57A1|LTR|ERV1 -24548 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 165.25-12 chr11 90497992 90498591 + 0.5 NA intron (NR_104190, intron 1 of 6) L1PA14|LINE|L1 57566 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 121.75-3 chr1 164256788 164257093 + 0.5 NA Intergenic Intergenic -302420 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 156-39 chr2 53841297 53841752 + 0.5 NA intron (NM_001164165, intron 1 of 9) AluSp|SINE|Alu 7681 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 162-29 chr22 27123744 27124164 + 0.5 NA Intergenic Intergenic -63436 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 113-51 chr2 123599683 123600029 + 0.5 NA Intergenic Intergenic 425318 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 144.75-62 chr4 42365631 42365954 + 0.5 NA intron (NR_134668, intron 1 of 1) AluSx|SINE|Alu 25476 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 116.5-109 chr7 36706865 36707113 + 0.5 NA intron (NM_001637, intron 1 of 20) Tigger1|DNA|TcMar-Tigger 17505 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 168.5-68 chr7 69556632 69557016 + 0.5 NA Intergenic AluSz|SINE|Alu 40800 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 117.75-72 chr6 24944608 24944914 + 0.5 NA intron (NM_001286446, intron 1 of 13) L1M4|LINE|L1 -8801 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 128-59 chr7 3044562 3044979 + 0.5 NA promoter-TSS (NM_032415) promoter-TSS (NM_032415) -903 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 117-84 chr8 92184749 92185160 + 0.5 NA Intergenic L1MB7|LINE|L1 -81569 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 155-25 chr2 69624237 69624666 + 0.5 NA intron (NM_014911, intron 2 of 21) L1ME4b|LINE|L1 19288 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 127.25-30 chr14 69192277 69192597 + 0.5 NA intron (NM_001193363, intron 1 of 8) intron (NM_001193363, intron 1 of 8) 671 NR_034165 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 133-35 chr18 74476790 74477131 + 0.5 NA Intergenic Intergenic -19403 NM_018235 55748 Hs.149185 NM_018235 ENSG00000133313 CNDP2 CN2|CPGL|HEL-S-13|HsT2298|PEPA carnosine dipeptidase 2 protein-coding 117.5-37 chr17 69227515 69227873 + 0.5 NA intron (NM_080282, intron 2 of 39) intron (NM_080282, intron 2 of 39) 7318 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 128-30 chr2 156170918 156171291 + 0.5 NA intron (NR_110250, intron 1 of 3) L1PA13|LINE|L1 83827 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 139.25-70 chr6 16180973 16181394 + 0.5 NA Intergenic LTR12C|LTR|ERV1 39627 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 125-61 chr3 59979877 59980306 + 0.5 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 100818 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 115.5-79 chr6 54305693 54306086 + 0.5 NA Intergenic L2|LINE|L2 -2552 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 134.5-75 chr5 93610199 93610654 + 0.5 NA Intergenic Intergenic 10362 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 123.5-113 chr8 139399853 139400238 + 0.5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 303078 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 183.5-6 chr1 117791062 117791712 + 0.5 NA Intergenic MLT2B1|LTR|ERVL 138234 NM_001135589 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 158-14 chr12 30557012 30557560 + 0.5 NA Intergenic Intergenic 119958 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 157-21 chr15 60321544 60321953 + 0.5 NA Intergenic L1PB4|LINE|L1 76238 NM_001002858 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 134.25-12 chr10 126596571 126597048 + 0.5 NA intron (NM_001350922, intron 2 of 8) MER47A|DNA|TcMar-Tigger 73701 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 120.5-34 chr14 76655420 76655762 + 0.5 NA Intergenic MIR3|SINE|MIR -105877 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 121-67 chr7 20039397 20039752 + 0.5 NA intron (NR_110114, intron 2 of 5) MER41A|LTR|ERV1 100852 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 225-22 chr4 56788729 56789470 + 0.5 NA Intergenic AluSc|SINE|Alu 32374 NR_073419 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 126.25-54 chr21 31548946 31549436 + 0.5 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 9896 NM_001353692 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 116.5-79 chr22_KI270738v1_random 61046 61345 + 0.5 NA NA Intergenic NA NA 121.5-108 chr8 79978491 79978767 + 0.5 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 51630 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 185.25-4 chr1 177014306 177014676 + 0.5 NA intron (NM_207108, intron 8 of 21) UCON29|DNA|PiggyBac? 14954 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 147.75-65 chr5 171205228 171205752 + 0.5 NA intron (NM_022897, intron 19 of 27) intron (NM_022897, intron 19 of 27) -103758 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 115.25 chr1 12659711 12660013 + 0.5 NA intron (NM_001013630, intron 2 of 3) AluJb|SINE|Alu 15315 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 124.25-13 chr10 42777917 42778276 + 0.5 NA Intergenic AluSc|SINE|Alu -4699 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 113.75-66 chr21 24984167 24984569 + 0.5 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 143818 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 134.75-27 chr18 4807819 4808171 + 0.5 NA Intergenic Intergenic -273187 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 237.75-35 chr4 1354930 1355557 + 0.5 NA exon (NM_001317934, exon 7 of 14) exon (NM_001317934, exon 7 of 14) 7687 NM_001317935 57654 Hs.380475 NM_020894 ENSG00000163945 UVSSA KIAA1530|UVSS3 UV stimulated scaffold protein A protein-coding 135.25-96 chr8 131765905 131766404 + 0.5 NA Intergenic Intergenic -137939 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 124.75-40 chr19 7107182 7107503 + 0.5 NA Intergenic (ATGATG)n|Simple_repeat|Simple_repeat 37639 NM_024341 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 144.5-70 chr3 18662412 18662804 + 0.5 NA Intergenic Intergenic -217016 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 139-48 chr3 62743433 62743764 + 0.5 NA intron (NM_003716, intron 3 of 29) intron (NM_003716, intron 3 of 29) 131818 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 117-49 chr20 46927747 46928004 + 0.5 NA intron (NM_172110, intron 1 of 13) MIRb|SINE|MIR 33032 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 147.75-42 chr20 38182420 38182845 + 0.5 NA Intergenic Intergenic -16124 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 126.25-67 chr4 139186139 139186489 + 0.5 NA Intergenic AluJb|SINE|Alu -9096 NM_001371336 125-79 chr5 27372906 27373242 + 0.5 NA Intergenic MER20|DNA|hAT-Charlie -99218 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 142-45 chr3 103665782 103666116 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -141833 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 118.5-33 chr13 30796626 30797014 + 0.5 NA Intergenic Intergenic -6386 NR_047012 100874158 Hs.577982 NR_047012 ENSG00000237879 LINC00398 - long intergenic non-protein coding RNA 398 ncRNA 113.5-69 chr20 50000884 50001156 + 0.5 NA Intergenic Intergenic 18040 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 175.25-30 chr2 113752598 113753048 + 0.5 NA intron (NM_001330315, intron 3 of 16) L1MC5a|LINE|L1 3819 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 118.25-69 chr4 61980868 61981275 + 0.5 NA intron (NM_001371343, intron 17 of 23) L1MC1|LINE|L1 180694 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 142-65 chr7 134865944 134866413 + 0.5 NA intron (NM_033157, intron 2 of 14) intron (NM_033157, intron 2 of 14) -25222 NM_033139 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 171.75-42 chr5 17828286 17828629 + 0.5 NA intron (NR_134286, intron 2 of 7) MLT1L|LTR|ERVL-MaLR 21183 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 118.5-75 chr4 34209355 34209767 + 0.5 NA intron (NR_147184, intron 2 of 3) MLT2A2|LTR|ERVL 60186 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 163.25-8 chr10 60364949 60365554 + 0.5 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 24624 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 117-33 chr2 14690807 14691149 + 0.5 NA Intergenic Intergenic 58261 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 117.25-18 chr11 38985107 38985471 + 0.5 NA Intergenic L1M2|LINE|L1 336431 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 131-63 chr6 156648173 156648628 + 0.5 NA Intergenic A-rich|Low_complexity|Low_complexity -129455 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 139.75-58 chr4 80526581 80527058 + 0.5 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 191099 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 143.25-25 chr14 51377065 51377386 + 0.5 NA Intergenic MLT2B3|LTR|ERVL 19910 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 131.75-50 chr21 43821101 43821482 + 0.5 NA Intergenic L1M5|LINE|L1 -8724 NR_026961 284837 Hs.592159 NM_194310 ENSG00000215458 AATBC - apoptosis associated transcript in bladder cancer ncRNA 200.25 chr1 85556950 85557515 + 0.5 NA intron (NM_001134445, intron 1 of 6) L2b|LINE|L2 20968 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 126-83 chr7 105256634 105257072 + 0.5 NA intron (NM_182692, intron 2 of 15) MER102b|DNA|hAT-Charlie 12224 NM_001350744 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 118-50 chr4 125085294 125085694 + 0.5 NA Intergenic L2|LINE|L2 -230918 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 137.25-59 chr4 97022130 97022463 + 0.5 NA Intergenic Intergenic -344630 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 138.25-4 chr1 102985871 102986408 + 0.5 NA intron (NM_001854, intron 30 of 66) L1PA4|LINE|L1 122357 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 134.75-57 chr5 83860447 83860782 + 0.5 NA Intergenic Intergenic -139759 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 130.25-27 chr14 71766438 71766916 + 0.5 NA Intergenic L1MEg2|LINE|L1 -165494 NM_001204423 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 117.75-53 chr3 51006127 51006550 + 0.5 NA intron (NM_004947, intron 5 of 52) L2a|LINE|L2 331258 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 121.25-82 chr8 119608545 119608986 + 0.5 NA intron (NM_001330600, intron 8 of 25) MIR|SINE|MIR -15757 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 144.75-25 chr14 29774647 29775052 + 0.5 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 152247 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 146.5-6 chr1 186986592 186986930 + 0.5 NA intron (NM_024420, intron 17 of 17) MIRb|SINE|MIR -106081 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 122.25-14 chr11 56933779 56934215 + 0.5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -54917 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 149.75-69 chr8 130904618 130905215 + 0.5 NA intron (NM_001115, intron 6 of 17) intron (NM_001115, intron 6 of 17) 135993 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 120.5-114 chr9 92000392 92000849 + 0.5 NA Intergenic MLT1L|LTR|ERVL-MaLR -50392 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 119.75-84 chr8 43899914 43900390 + 0.5 NA Intergenic ALR/Alpha|Satellite|centr 607710 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 132.75-63 chr3 120870218 120870663 + 0.5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -34083 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 171.25-24 chr18 2818586 2819027 + 0.5 NA Intergenic L1M4c|LINE|L1 -28200 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 159.75-64 chr8 113752577 113753005 + 0.5 NA Intergenic L2a|LINE|L2 -315852 NM_198123 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 132.5-44 chr18 5635971 5636389 + 0.5 NA Intergenic L2a|LINE|L2 -7189 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 144.25-33 chr18 69089795 69090352 + 0.5 NA Intergenic Intergenic 291993 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 126-20 chr12 6350678 6351039 + 0.5 NA intron (NM_001038, intron 8 of 12) (AAAT)n|Simple_repeat|Simple_repeat -8741 NM_001065 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 136.25-45 chr2 117068559 117068911 + 0.5 NA Intergenic MER57D|LTR|ERV1 -745956 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 132.25-37 chr18 6201929 6202310 + 0.5 NA intron (NM_001365769, intron 12 of 16) MER57B2|LTR|ERV1 -54625 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 122.25-37 chr18 6046432 6046783 + 0.5 NA intron (NM_001365767, intron 16 of 16) L1PA16|LINE|L1 -150653 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 139.5-105 chr8 85381406 85381785 + 0.5 NA Intergenic L1PA10|LINE|L1 -3482 NM_001128829 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 147.5-59 chr3 96525418 96525733 + 0.5 NA Intergenic L1M4|LINE|L1 165611 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 118.5-114 chr8 75457285 75457566 + 0.5 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 49776 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 201.25-19 chr2 163772767 163773169 + 0.5 NA Intergenic AluSq2|SINE|Alu -36960 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 123.75-57 chr2 240085091 240085554 + 0.5 NA Intergenic AluYj4|SINE|Alu -39250 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 118.5-46 chr17 60906417 60906799 + 0.5 NA intron (NM_001330413, intron 11 of 25) L1MEg|LINE|L1 228757 NM_017679 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 171.75-58 chr8 75911225 75911680 + 0.5 NA Intergenic (TTCTT)n|Simple_repeat|Simple_repeat 371484 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 125-2 chr1 41690244 41690637 + 0.5 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -205757 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 136.5-44 chr17 76511178 76511674 + 0.5 NA Intergenic Intergenic -9999 NM_024599 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 115-39 chr2 66031311 66031666 + 0.5 NA Intergenic Intergenic 326840 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 116.5-122 chr8 122033038 122033455 + 0.5 NA Intergenic Intergenic -391806 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 119-20 chr13 79442576 79442923 + 0.5 NA Intergenic Intergenic 36440 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 146.5-61 chr3 89302870 89303271 + 0.5 NA intron (NM_182644, intron 3 of 6) AluJb|SINE|Alu 195449 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 116.25-18 chr12 52416729 52417128 + 0.5 NA Intergenic MER5A|DNA|hAT-Charlie -10536 NM_033033 3888 Hs.134640 NM_033033 ENSG00000161850 KRT82 HB2|Hb-2|KRTHB2 keratin 82 protein-coding 161.5-47 chr2 68662463 68662991 + 0.5 NA Intergenic HAL1b|LINE|L1 19139 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 134.75-25 chr17 63246570 63246948 + 0.5 NA intron (NM_025185, intron 7 of 25) L1MB7|LINE|L1 193508 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 132.25-64 chr3 187958668 187959111 + 0.5 NA non-coding (NR_135538, exon 3 of 3) non-coding (NR_135538, exon 3 of 3) 17518 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 115.75-53 chr22 27372372 27372801 + 0.5 NA Intergenic Intergenic 61935 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 123.25-69 chr5 98770582 98771041 + 0.5 NA non-coding (NR_033932, exon 2 of 2) non-coding (NR_033932, exon 2 of 2) 1375 NM_001012761 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 121.5-86 chr4 31616236 31616698 + 0.5 NA Intergenic MER65-int|LTR|ERV1 109923 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 135.75-87 chr6 73762154 73762500 + 0.5 NA intron (NM_001159588, intron 6 of 31) intron (NM_001159588, intron 6 of 31) 66124 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 123.75-40 chr14 61979111 61979508 + 0.5 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 51614 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 139.25-79 chr8 72947004 72947485 + 0.5 NA Intergenic AluJr|SINE|Alu -61620 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 163.5-26 chr12 104727341 104727900 + 0.5 NA intron (NM_018413, intron 2 of 2) L2c|LINE|L2 135987 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 128.25-18 chr11 45216771 45217188 + 0.5 NA intron (NM_001256695, intron 5 of 7) intron (NM_001256695, intron 5 of 7) 69362 NM_001247987 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 112.75-24 chr12 14760197 14760588 + 0.5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 10739 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 135.25-25 chr13 86631753 86632127 + 0.5 NA Intergenic Intergenic -279980 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 116.5-8 chr1 184589619 184589947 + 0.5 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 165075 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 125.5-95 chr4 73143853 73144337 + 0.5 NA intron (NM_032217, intron 11 of 33) intron (NM_032217, intron 11 of 33) -74336 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 119-72 chr8 76287292 76287597 + 0.5 NA Intergenic Intergenic -119210 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 149.25-11 chr10 122458045 122458634 + 0.5 NA TTS (NM_001099667) TTS (NM_001099667) -3214 NM_002775 5654 Hs.501280 NM_002775 ENSG00000166033 HTRA1 ARMD7|CADASIL2|CARASIL|HtrA|L56|ORF480|PRSS11 HtrA serine peptidase 1 protein-coding 139-33 chr2 89832188 89832622 + 0.5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -194498 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 159-2 chr1 102560430 102560792 + 0.5 NA Intergenic L1M4|LINE|L1 547885 NM_001190709 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 154.5-53 chr3 49380258 49380734 + 0.5 NA intron (NM_001664, intron 1 of 4) AluSx1|SINE|Alu -21896 NM_001329455 2876 Hs.76686 NM_000581 ENSG00000233276 GPX1 GPXD|GSHPX1 glutathione peroxidase 1 protein-coding 115.25-44 chr2 30999507 30999871 + 0.5 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 129951 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 144.5-61 chr20 35480283 35480717 + 0.5 NA intron (NM_007186, intron 20 of 34) L1MEd|LINE|L1 20517 NM_001318219 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 129-35 chr2 65612962 65613435 + 0.5 NA Intergenic Intergenic -180599 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 119.75-7 chr10 29032385 29032771 + 0.5 NA Intergenic Intergenic 186170 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 135-38 chr2 37685282 37685742 + 0.5 NA Intergenic L1MC3|LINE|L1 -12977 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 116-12 chr10 111662446 111662809 + 0.5 NA Intergenic Intergenic 521138 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 131.5-73 chr5 20598516 20598957 + 0.5 NA Intergenic MER20B|DNA|hAT-Charlie -13104 NR_149120 105374676 Hs.561423 NR_149120 ENSG00000251629 LINC02241 - long intergenic non-protein coding RNA 2241 ncRNA 187.75-42 chr5 28143677 28144092 + 0.5 NA Intergenic Intergenic 143781 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 128.5-69 chr4 125306763 125307229 + 0.5 NA Intergenic L1MEh|LINE|L1 -9416 NM_024582 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 140.25-90 chr8 90914370 90914682 + 0.5 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 70551 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 143.5-34 chr14 76756328 76756733 + 0.5 NA Intergenic Intergenic -4938 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 116.75-80 chr8 81095835 81096284 + 0.5 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 16009 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 114.25-4 chr1 112019141 112019495 + 0.5 NA Intergenic L2a|LINE|L2 28782 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 119.75-13 chr10 81399292 81399651 + 0.5 NA Intergenic Intergenic -475723 NM_001010848 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 154.25-22 chr12 45066318 45066851 + 0.5 NA Intergenic MSTA|LTR|ERVL-MaLR -1173 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 156.75-63 chr3 143710816 143711256 + 0.5 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 137432 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 123.75-79 chr4 31694683 31695083 + 0.5 NA Intergenic Intergenic 188339 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 112.75-61 chr3 80573438 80573796 + 0.5 NA Intergenic L1P4|LINE|L1 -191280 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 118.5-19 chr10 36645766 36646134 + 0.5 NA Intergenic Intergenic -479907 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 124.5 chr1 73426906 73427237 + 0.5 NA Intergenic Intergenic 120901 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 118.5-123 chrX 68520170 68520412 + 0.5 NA intron (NM_001195214, intron 3 of 5) intron (NM_001195214, intron 3 of 5) 21240 NM_173834 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 137-30 chr18 41904803 41905244 + 0.5 NA Intergenic Intergenic -50211 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 120.75-80 chr5 117479083 117479408 + 0.5 NA intron (NR_046089, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 63733 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 143-77 chr9 85586114 85586594 + 0.5 NA intron (NM_015239, intron 22 of 25) intron (NM_015239, intron 22 of 25) 155675 NM_001330701 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 193.5-76 chr8 110705123 110705860 + 0.5 NA Intergenic L3|LINE|CR1 321942 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 119.5-61 chr2 124180000 124180289 + 0.5 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 154857 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 129.25-29 chr14 66284903 66285281 + 0.5 NA Intergenic Intergenic -201279 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 162.75-53 chr4 76530190 76530711 + 0.5 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -43118 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 120.25-77 chr8 133146940 133147275 + 0.5 NA Intergenic Intergenic -43932 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 165.5-95 chrX 21586973 21587561 + 0.5 NA intron (NM_001168648, intron 13 of 20) L1MEi|LINE|L1 71063 NM_153270 257240 Hs.448572 NM_153270 ENSG00000185915 KLHL34 - kelch like family member 34 protein-coding 122.5-91 chr8 60630774 60631152 + 0.5 NA Intergenic Intergenic -47777 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 117.25-96 chr9 4739138 4739417 + 0.5 NA intron (NM_001199853, intron 1 of 4) AluSx1|SINE|Alu 1925 NM_001199852 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 147.75-54 chr3 197935902 197936321 + 0.5 NA intron (NM_001323030, intron 5 of 7) AluSx|SINE|Alu 13814 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 162-52 chr6 112005703 112006137 + 0.5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -48155 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 135.5-96 chr7 25768616 25769018 + 0.5 NA intron (NR_157808, intron 1 of 4) L2|LINE|L2 7382 NR_157810 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 130.25-72 chr5 32863359 32863801 + 0.5 NA Intergenic Intergenic -83863 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 187.75-21 chr2 33271297 33271672 + 0.5 NA intron (NM_206943, intron 15 of 33) intron (NM_206943, intron 15 of 33) 136887 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 116.25-50 chr2 116782747 116783089 + 0.5 NA Intergenic MER101-int|LTR|ERV1 -1031773 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 135.25-83 chr5 158760485 158760887 + 0.5 NA intron (NM_001324107, intron 10 of 15) intron (NM_001324107, intron 10 of 15) 337270 NM_001364158 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 130-12 chr11 79460337 79460780 + 0.5 NA Intergenic Intergenic -19528 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 140.75-16 chr13 22203204 22203593 + 0.5 NA Intergenic Intergenic -6887 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 118.5-113 chr8 47828828 47829106 + 0.5 NA intron (NM_001081640, intron 61 of 84) intron (NM_001081640, intron 61 of 84) -90803 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 126.5-123 chr9 18927613 18927902 + 0.5 NA TTS (NM_001287049) TTS (NM_001287049) 105452 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 164.25-52 chr5 166780094 166780625 + 0.5 NA Intergenic AluJr|SINE|Alu 146011 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 124.5-10 chr1 204761034 204761385 + 0.5 NA Intergenic Intergenic -67443 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 122.5-67 chr5 18937919 18938300 + 0.5 NA Intergenic Intergenic 948163 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 165.5-3 chr1 73519342 73519961 + 0.5 NA Intergenic MER31B|LTR|ERV1 -155028 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 131.25-74 chr6 38257721 38257983 + 0.5 NA intron (NM_052893, intron 9 of 11) L1ME3|LINE|L1 -223744 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 117.25-84 chr7 22315170 22315472 + 0.5 NA intron (NM_012294, intron 3 of 25) intron (NM_012294, intron 3 of 25) 41833 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 132-64 chr6 45794517 45794898 + 0.5 NA Intergenic HAL1ME|LINE|L1 142890 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 118.75-27 chr13 73324540 73324856 + 0.5 NA Intergenic MIRb|SINE|MIR -239546 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 121-41 chr3 1959251 1959643 + 0.5 NA Intergenic MLT2F|LTR|ERVL -139356 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 128.25-41 chr22 35280249 35280675 + 0.5 NA intron (NM_001003681, intron 5 of 10) intron (NM_001003681, intron 5 of 10) -18813 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 114-66 chr4 112179936 112180244 + 0.5 NA intron (NM_152400, intron 1 of 1) L1PA16|LINE|L1 34636 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 120.5-39 chr17 33689251 33689613 + 0.5 NA intron (NM_001094, intron 1 of 9) MER20|DNA|hAT-Charlie -155672 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 129.5-32 chr14 98912584 98913005 + 0.5 NA Intergenic Intergenic 201181 NR_161368 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 126-26 chr14 48579129 48579583 + 0.5 NA Intergenic MER91A|DNA|hAT-Tip100 -784342 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 156.25-53 chr3 172924532 172924936 + 0.5 NA intron (NM_031955, intron 7 of 10) intron (NM_031955, intron 7 of 10) 173732 NM_001349099 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 128.75-38 chr2 31840371 31840766 + 0.5 NA Intergenic AluSc8|SINE|Alu -36588 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 123.25-77 chr7 136495716 136496101 + 0.5 NA Intergenic Intergenic -372744 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 121-23 chr14 104083781 104084139 + 0.5 NA Intergenic Intergenic -1740 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 160-3 chr1 193834482 193834839 + 0.5 NA Intergenic L3|LINE|CR1 529915 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 174-26 chr2 9464825 9465336 + 0.5 NA intron (NM_016207, intron 15 of 17) intron (NM_016207, intron 15 of 17) -9471 NM_001320863 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 136.75-76 chr5 6180320 6180757 + 0.5 NA Intergenic Intergenic 156754 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 134.5-40 chr19 35517989 35518481 + 0.5 NA Intergenic Intergenic -4586 NM_001190348 93099 Hs.417795 NM_033317 ENSG00000161249 DMKN UNQ729|ZD52F10 dermokine protein-coding 129.25-9 chr10 59707728 59708172 + 0.5 NA intron (NM_001323981, intron 1 of 6) intron (NM_001323981, intron 1 of 6) 1941 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 170.5-5 chr1 150073865 150074439 + 0.5 NA intron (NR_103998, intron 3 of 13) AluSx|SINE|Alu 6376 NM_007259 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 139-16 chr13 74822054 74822414 + 0.5 NA Intergenic Intergenic 269391 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 120.75-9 chr10 113972543 113972932 + 0.5 NA Intergenic MARNA|DNA|TcMar-Mariner -71129 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 116.5-117 chr7 115960918 115961379 + 0.5 NA intron (NM_001018058, intron 2 of 6) L1M5|LINE|L1 7165 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 124-6 chr1 232705572 232706013 + 0.5 NA Intergenic Intergenic -12279 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 147 chr1 35969953 35970395 + 0.5 NA intron (NM_024852, intron 3 of 18) L1MC4|LINE|L1 39069 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 115.75-81 chr5 175760479 175760814 + 0.5 NA Intergenic THE1C-int|LTR|ERVL-MaLR -35887 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 154.75-4 chr10 29600268 29600804 + 0.5 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) 1810 NR_030634 100126327 NR_030634 ENSG00000216035 MIR938 MIRN938|hsa-mir-938 microRNA 938 ncRNA 160.5-70 chr7 27744736 27745359 + 0.5 NA intron (NM_001362794, intron 1 of 16) intron (NM_001362794, intron 1 of 16) 4952 NM_001206902 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 114.75-16 chr10 110432779 110433043 + 0.5 NA Intergenic MLT1B|LTR|ERVL-MaLR -64996 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 118.25-11 chr10 112987970 112988296 + 0.5 NA intron (NM_001367943, intron 4 of 14) AluSq|SINE|Alu 37883 NM_001198530 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 161.25-21 chr14 60214829 60215456 + 0.5 NA Intergenic Intergenic -30608 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 124-3 chr1 114401591 114401934 + 0.5 NA intron (NM_015906, intron 16 of 19) intron (NM_015906, intron 16 of 19) 109441 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 116.25-66 chr4 87243160 87243460 + 0.5 NA Intergenic AluJb|SINE|Alu -22692 NM_020803 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 141.5-42 chr16 81682600 81683018 + 0.5 NA intron (NM_030629, intron 10 of 20) intron (NM_030629, intron 10 of 20) 17455 NR_045112 100129617 Hs.657151 NR_045112 LOC100129617 - uncharacterized LOC100129617 ncRNA 115.75-97 chr8 107052672 107052904 + 0.5 NA Intergenic Intergenic -282544 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 153-7 chr11 28524137 28524592 + 0.5 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -46816 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 141.5-68 chr21 26591829 26592286 + 0.5 NA Intergenic Intergenic -18771 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 142.5-54 chr3 88092136 88092617 + 0.5 NA intron (NM_001350135, intron 2 of 6) L2c|LINE|L2 33121 NM_001366097 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 126.5-75 chr3 149551545 149551964 + 0.5 NA intron (NM_001348362, intron 6 of 9) intron (NM_001348362, intron 6 of 9) 77057 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 116.75-45 chr2 124869994 124870372 + 0.5 NA intron (NM_130773, intron 21 of 23) L1MEd|LINE|L1 844896 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 129.25-44 chr2 125755861 125756182 + 0.5 NA Intergenic Intergenic 361964 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 143-52 chr4 32959264 32959811 + 0.5 NA Intergenic Intergenic 608499 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 117-71 chr5 76844972 76845319 + 0.5 NA Intergenic Intergenic -4869 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 141.5-36 chr16 48548953 48549383 + 0.5 NA intron (NM_153029, intron 4 of 6) intron (NM_153029, intron 4 of 6) 61012 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 169.5-67 chr5 123426419 123426819 + 0.5 NA Intergenic Intergenic -3027 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 124.5-25 chr12 76812680 76813087 + 0.5 NA intron (NM_015336, intron 5 of 16) intron (NM_015336, intron 5 of 16) 48625 NM_001359626 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 117.75-36 chr2 17888244 17888636 + 0.5 NA intron (NM_002252, intron 1 of 2) L1PB1|LINE|L1 9773 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 116.5-36 chr14 49259591 49259914 + 0.5 NA Intergenic Intergenic 326628 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 137.25-37 chr16 85775558 85776070 + 0.5 NA Intergenic Intergenic -16601 NR_135193 101928557 Hs.662217 NR_135193 ENSG00000270159 LOC101928557 - uncharacterized LOC101928557 ncRNA 158.5-97 chr7 88471972 88472529 + 0.5 NA Intergenic AluSz|SINE|Alu -165356 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 118.75-36 chr16 25526261 25526636 + 0.5 NA Intergenic Intergenic -165511 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 148-70 chrX 30132594 30133060 + 0.5 NA Intergenic MSTB|LTR|ERVL-MaLR -82736 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 174.25-27 chr17 33248165 33248850 + 0.5 NA intron (NM_001094, intron 1 of 9) MLT1D|LTR|ERVL-MaLR 44481 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 201.25-38 chr6 65492189 65492717 + 0.5 NA intron (NM_198283, intron 3 of 9) intron (NM_198283, intron 3 of 9) 87351 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 168.75-58 chr7 91014523 91014997 + 0.5 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -249673 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 129.25-41 chr2 58965584 58965899 + 0.5 NA intron (NR_033873, intron 6 of 13) L3|LINE|CR1 -251967 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 138.25-29 chr15 25415932 25416328 + 0.5 NA intron (NM_001354543, intron 2 of 16) L1ME3A|LINE|L1 22099 NM_001354505 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 117.5-6 chr1 200068096 200068510 + 0.5 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 25478 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 129-81 chr8 133718372 133718689 + 0.5 NA Intergenic Intergenic -34464 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 166.75-57 chr7 104512393 104513010 + 0.5 NA intron (NM_199000, intron 1 of 2) AluSx1|SINE|Alu 184045 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 123.25-58 chr3 111676733 111677150 + 0.5 NA non-coding (NR_046733, exon 2 of 2) non-coding (NR_046733, exon 2 of 2) 492 NR_046733 100874115 Hs.626740 NR_046733 PLCXD2-AS1 - PLCXD2 antisense RNA 1 ncRNA 133-49 chr4 33548159 33548602 + 0.5 NA Intergenic UCON105|Unknown|Unknown 491513 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 174.75-58 chr9 132905596 132905995 + 0.5 NA exon (NM_001162426, exon 15 of 23) exon (NM_001162426, exon 15 of 23) 26897 NM_001316900 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 125.25-5 chr10 51193520 51194015 + 0.5 NA intron (NM_001098512, intron 2 of 17) MamSINE1|SINE|tRNA-RTE -105806 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 112.75-28 chr12 128630798 128631080 + 0.5 NA intron (NM_001136103, intron 4 of 8) AluSc8|SINE|Alu 193019 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 120.5-65 chr3 64624399 64624697 + 0.5 NA intron (NM_001318781, intron 15 of 38) Tigger18a|DNA|TcMar-Tigger -60322 NR_038264 100507098 Hs.660881 NR_038264 ENSG00000241684 ADAMTS9-AS2 - ADAMTS9 antisense RNA 2 ncRNA 117.5-65 chr3 165268773 165269167 + 0.5 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 62010 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 141.5-120 chr9 92029806 92030262 + 0.5 NA Intergenic Intergenic -79806 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 120.75-16 chr11 94761405 94761827 + 0.5 NA Intergenic Intergenic -6740 NM_130847 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 152.5-73 chr3 142886596 142887187 + 0.5 NA intron (NM_013363, intron 2 of 8) intron (NM_013363, intron 2 of 8) 2192 NM_013363 26577 Hs.8944 NM_013363 ENSG00000163710 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 protein-coding 152.25-45 chr4 133127101 133127685 + 0.5 NA intron (NR_125885, intron 7 of 8) intron (NR_125885, intron 7 of 8) 21723 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 112.75-45 chr2 31858111 31858551 + 0.5 NA Intergenic Intergenic -54351 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 125-57 chr3 16417837 16418254 + 0.5 NA intron (NM_015150, intron 3 of 9) intron (NM_015150, intron 3 of 9) 95654 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 141.5-55 chr2 54821820 54822112 + 0.5 NA intron (NM_001039753, intron 4 of 40) L1ME4a|LINE|L1 96954 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 137.25-48 chr21 30919529 30919905 + 0.5 NA Intergenic Intergenic -38137 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 161.25-76 chr7 82270334 82270803 + 0.5 NA intron (NM_000722, intron 3 of 38) L1ME3|LINE|L1 173209 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 145.25-78 chr7 124774118 124774644 + 0.5 NA Intergenic Intergenic -8589 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 122.75-82 chr8 131657763 131658045 + 0.5 NA Intergenic L1M2|LINE|L1 -246189 NM_001323558 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 152-28 chr16 63795314 63795873 + 0.5 NA Intergenic L2a|LINE|L2 1326470 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 124.25-46 chr2 30670300 30670651 + 0.5 NA Intergenic L1MCc|LINE|L1 136971 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 113.5-75 chr3 44232024 44232334 + 0.5 NA Intergenic Intergenic -9707 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 117.25-33 chr16 84417309 84417770 + 0.5 NA intron (NM_001291454, intron 4 of 23) intron (NM_001291454, intron 4 of 23) 10951 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 163-43 chr6 20654700 20655108 + 0.5 NA intron (NM_017774, intron 5 of 15) L1ME3D|LINE|L1 120447 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 119-8 chr1 224105218 224105523 + 0.5 NA Intergenic L2-3_Crp|LINE|L2 -8741 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 116.75-47 chr20 7981644 7982016 + 0.5 NA 3' UTR (NM_021156, exon 8 of 8) 3' UTR (NM_021156, exon 8 of 8) 37931 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 113.75-98 chr7 71166186 71166575 + 0.5 NA intron (NM_022479, intron 1 of 10) L1ME1|LINE|L1 34236 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 118-33 chr17 60067935 60068288 + 0.5 NA intron (NM_022070, intron 7 of 19) MER105|DNA|hAT-Charlie 10820 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 142.75-58 chr3 182249001 182249418 + 0.5 NA Intergenic Intergenic 237153 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 120.5-101 chr7 82095310 82095673 + 0.5 NA intron (NM_000722, intron 6 of 38) MIRb|SINE|MIR 86314 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 144-65 chr6 134752035 134752517 + 0.5 NA Intergenic Intergenic 197825 NM_022568 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 205-20 chr17 40085195 40085637 + 0.5 NA intron (NM_001190919, intron 6 of 9) AluSz|SINE|Alu 15173 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 125.5-20 chr10 89628373 89628655 + 0.5 NA intron (NM_148977, intron 1 of 6) L1MB8|LINE|L1 15402 NM_148978 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 158.5-93 chr7 41010933 41011355 + 0.5 NA Intergenic Intergenic -31205 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 127.75-10 chr10 59372886 59373200 + 0.5 NA Intergenic Intergenic -9862 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 114.5-27 chr16 53286070 53286473 + 0.5 NA exon (NM_025134, exon 26 of 39) exon (NM_025134, exon 26 of 39) 77820 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 113.75-58 chr2 139671522 139671877 + 0.5 NA Intergenic Intergenic 774375 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 128-15 chr14 105025537 105025929 + 0.5 NA Intergenic Intergenic -4650 NM_145701 55038 Hs.34045 NM_017955 ENSG00000170779 CDCA4 HEPP|SEI-3/HEPP cell division cycle associated 4 protein-coding 118-13 chr11 9969489 9969769 + 0.5 NA intron (NM_030962, intron 13 of 39) L2a|LINE|L2 130487 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 114.25-100 chr7 129213841 129214163 + 0.5 NA TTS (NM_005631) TTS (NM_005631) -11028 NM_001130720 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 124.5-91 chr6 82945754 82946119 + 0.5 NA intron (NR_146807, intron 10 of 10) intron (NR_146807, intron 10 of 10) 119905 NR_146808 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 178.75-36 chr3 78798337 78798747 + 0.5 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 220917 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 123.25-41 chr2 27544241 27544517 + 0.5 NA Intergenic L1ME2|LINE|L1 -32143 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 193.25-19 chr20 31065620 31066238 + 0.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -191735 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 128.5-7 chr1 238024710 238025073 + 0.5 NA Intergenic MLT1D|LTR|ERVL-MaLR -133969 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 144.75-34 chr19 11939874 11940370 + 0.5 NA intron (NM_144566, intron 1 of 3) AluSp|SINE|Alu 15015 NM_144566 90592 Hs.528486 NM_144566 ENSG00000196757 ZNF700 - zinc finger protein 700 protein-coding 130.5-79 chr6 54364011 54364476 + 0.5 NA intron (NM_014464, intron 9 of 10) L2|LINE|L2 55802 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 124.25-77 chr8 19905130 19905378 + 0.5 NA Intergenic L1M5|LINE|L1 -33999 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 135.25-55 chr20 60951631 60951986 + 0.5 NA Intergenic L2a|LINE|L2 -127256 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 151-38 chr2 178235908 178236310 + 0.5 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) 41597 NM_001201480 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 122.25-7 chr10 19342990 19343401 + 0.5 NA intron (NM_001142308, intron 24 of 39) intron (NM_001142308, intron 24 of 39) 294394 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 115.5-74 chr5 93607085 93607463 + 0.5 NA Intergenic Intergenic 13514 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 151-20 chr16 12064256 12064672 + 0.5 NA intron (NM_032167, intron 9 of 20) intron (NM_032167, intron 9 of 20) 87730 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 144-36 chr20 35938718 35939187 + 0.5 NA exon (NM_016436, exon 16 of 18) exon (NM_016436, exon 16 of 18) 15674 NM_033630 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 121.25-66 chr6 82708863 82709202 + 0.5 NA Intergenic L1MA7|LINE|L1 344788 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 122.75-10 chr10 34638884 34639178 + 0.5 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 176265 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 128.25-81 chr8 94345269 94345721 + 0.5 NA Intergenic L1ME3Cz|LINE|L1 -83176 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 151.75-44 chr2 102935628 102936083 + 0.5 NA Intergenic Intergenic -40133 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 139.25-2 chr1 78381637 78382181 + 0.5 NA Intergenic L1MB5|LINE|L1 -109065 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 130.25-76 chr5 67210732 67211045 + 0.5 NA Intergenic L2b|LINE|L2 -14089 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 124-33 chr2 238091214 238091606 + 0.5 NA intron (NM_016510, intron 8 of 11) intron (NM_016510, intron 8 of 11) -8930 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 120.5-23 chr12 23321087 23321450 + 0.5 NA Intergenic L1MB8|LINE|L1 145632 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 151.5-39 chr2 117948553 117948989 + 0.5 NA intron (NM_019044, intron 14 of 23) intron (NM_019044, intron 14 of 23) 65299 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 153.75-92 chrX 79354964 79355462 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 12121 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 131.75-72 chr6 169021803 169022309 + 0.5 NA Intergenic Intergenic 13587 NR_134622 101929460 Hs.355225 NR_134622 ENSG00000229720 LOC101929460 - uncharacterized LOC101929460 ncRNA 115.75-2 chr1 82013896 82014238 + 0.5 NA Intergenic Intergenic 211614 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 136.5-113 chr9 72139362 72139640 + 0.5 NA intron (NM_001242507, intron 1 of 13) intron (NM_001242507, intron 1 of 13) -9850 NM_001242505 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 116.25-11 chr10 59526996 59527347 + 0.5 NA Intergenic Intergenic -163990 NM_001347840 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 136.5-13 chr10 59555890 59556380 + 0.5 NA Intergenic L2c|LINE|L2 153756 NM_001323978 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 160.75-60 chr7 43527816 43528280 + 0.5 NA intron (NM_001287059, intron 22 of 27) intron (NM_001287059, intron 22 of 27) -5506 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 148.5-97 chr6 169535410 169535878 + 0.5 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 166385 NM_182552 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 121.75-83 chr7 111908480 111908827 + 0.5 NA intron (NM_001363540, intron 13 of 52) L1PA8|LINE|L1 100148 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 175.75-2 chr1 174209173 174209606 + 0.5 NA intron (NM_001366445, intron 1 of 13) L1MA3|LINE|L1 49869 NR_158982 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 125.25-79 chr7 28547503 28547985 + 0.5 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 112129 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 149.5-29 chr13 104006401 104006940 + 0.5 NA Intergenic Intergenic 581470 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 154.5-38 chr17 69305606 69305996 + 0.5 NA intron (NM_018672, intron 5 of 37) AluJr|SINE|Alu 9832 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 158-45 chr4 37404716 37405324 + 0.5 NA intron (NM_001144990, intron 3 of 6) MSTA|LTR|ERVL-MaLR -48905 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 113.75-79 chr3 181930168 181930568 + 0.5 NA Intergenic MIR|SINE|MIR -21996 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 170.5-11 chr10 32393240 32393762 + 0.5 NA Intergenic MIRb|SINE|MIR -14732 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 118.5-25 chr11 40644087 40644499 + 0.5 NA intron (NM_020929, intron 2 of 4) L1MD1|LINE|L1 -351163 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 120.5-83 chr5 76638573 76638985 + 0.5 NA intron (NM_001285462, intron 5 of 23) intron (NM_001285462, intron 5 of 23) -15376 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 135-19 chr12 79128286 79128608 + 0.5 NA intron (NM_005639, intron 3 of 10) (ATAG)n|Simple_repeat|Simple_repeat 82755 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 114.75-86 chr6 66038620 66039015 + 0.5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 250938 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 135-5 chr1 110107081 110107542 + 0.5 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) -5132 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 146.5-23 chr12 61259414 61259823 + 0.5 NA Intergenic Intergenic 933221 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 115-15 chr10 114665999 114666359 + 0.5 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -7904 NM_002313 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 134 chr1 24235817 24236128 + 0.5 NA Intergenic Intergenic 35732 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 139.75-19 chr12 28977833 28978308 + 0.5 NA Intergenic Intergenic -171208 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 130-53 chr3 144046613 144047087 + 0.5 NA Intergenic AluSx1|SINE|Alu 73769 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 130-42 chr20 57149134 57149504 + 0.5 NA Intergenic Intergenic -64377 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 129.5-87 chr7 48364765 48365252 + 0.5 NA intron (NM_152701, intron 31 of 61) L1MA4|LINE|L1 193550 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 124.75-58 chr22 31980045 31980323 + 0.5 NA intron (NR_149128, intron 2 of 4) AluSg|SINE|Alu 9361 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 151-14 chr13 64220787 64221247 + 0.5 NA Intergenic L1PA11|LINE|L1 -145006 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 155.25-53 chr4 91121965 91122359 + 0.5 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 887131 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 133.25 chr1 51601526 51601877 + 0.5 NA Intergenic Intergenic -15391 NM_148908 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 149.75-10 chr12 16469805 16470300 + 0.5 NA Intergenic Intergenic 116635 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 120.5-26 chr12 119232964 119233295 + 0.5 NA Intergenic Intergenic 54339 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 118.25-25 chr12 79206481 79206921 + 0.5 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 161009 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 131.5-48 chr2 207413376 207413764 + 0.5 NA Intergenic Intergenic -116392 NR_163946 156.75-57 chr20 42588133 42588651 + 0.5 NA intron (NM_133170, intron 7 of 31) AluSz|SINE|Alu -97091 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 195.75-28 chr3 100307238 100307838 + 0.5 NA intron (NM_001199198, intron 13 of 18) intron (NM_001199198, intron 13 of 18) -27219 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 130.5-33 chr13 112181851 112182137 + 0.5 NA Intergenic Intergenic -15339 NR_108094 101928698 Hs.528451 NR_108094 LINC01070 - long intergenic non-protein coding RNA 1070 ncRNA 140.5-16 chr12 50459528 50459946 + 0.5 NA intron (NM_001170808, intron 10 of 14) AluSc|SINE|Alu 3166 NR_132753 106633800 NR_132753 SNORD133 ZL142|ZL42|ggn68 small nucleolar RNA, C/D box 133 snoRNA 116.25-76 chr5 151345126 151345547 + 0.5 NA intron (NM_181776, intron 1 of 9) MIRb|SINE|MIR 2223 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 120.25-54 chr4 105516670 105517082 + 0.5 NA Intergenic AluJr|SINE|Alu -35744 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 120.75-37 chr16 86315083 86315442 + 0.5 NA Intergenic Intergenic 28831 NR_038438 146513 Hs.434338 NR_038438 ENSG00000268532 LINC02135 - long intergenic non-protein coding RNA 2135 ncRNA 147-35 chr19 31681967 31682478 + 0.5 NA Intergenic AluY|SINE|Alu 89941 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 155.5-48 chr18 72446008 72446390 + 0.5 NA Intergenic MIRb|SINE|MIR 98143 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 118.5-8 chr1 79025765 79026107 + 0.5 NA Intergenic Intergenic -19206 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 205.5-35 chr22 31170303 31170866 + 0.5 NA intron (NR_024212, intron 1 of 5) AluSx|SINE|Alu 10402 NM_152267 91445 Hs.517553 NM_152267 ENSG00000138942 RNF185 - ring finger protein 185 protein-coding 144-44 chr3 30739262 30739630 + 0.5 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 132845 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 148.5-26 chr14 26379146 26379564 + 0.5 NA Intergenic Intergenic 174075 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 182-5 chr10 5077484 5078045 + 0.5 NA intron (NM_001253908, intron 1 of 8) MER75|DNA|PiggyBac -16650 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 144.5-21 chr11 58004489 58004856 + 0.5 NA Intergenic Intergenic -19209 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 142.25-65 chr7 30992584 30992998 + 0.5 NA Intergenic Intergenic 28838 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 189.5-65 chr7 85242446 85242986 + 0.5 NA Intergenic L1MC1|LINE|L1 -120785 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 141.5-47 chr18 10551017 10551521 + 0.5 NA 3' UTR (NM_003826, exon 12 of 12) 3' UTR (NM_003826, exon 12 of 12) 25242 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 151.25-4 chr10 26462326 26462834 + 0.5 NA intron (NM_019043, intron 2 of 14) L1M5|LINE|L1 24239 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 114.75-82 chr6 1044757 1045186 + 0.5 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 56361 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 147.75-17 chr12 99523202 99523531 + 0.5 NA intron (NM_152788, intron 9 of 25) L3|LINE|CR1 -124387 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 114.75-44 chr19 28012170 28012600 + 0.5 NA intron (NR_146733, intron 5 of 6) intron (NR_146733, intron 5 of 6) -218445 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 120.75-70 chr4 7914627 7915083 + 0.5 NA intron (NM_001371091, intron 1 of 17) AluSx1|SINE|Alu -24146 NM_203423 389199 Hs.375210 NM_203423 LOC389199 - uncharacterized LOC389199 protein-coding 133-37 chr2 38205641 38205975 + 0.5 NA Intergenic L1ME1|LINE|L1 74703 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 169-23 chr2 38989588 38990141 + 0.5 NA intron (NM_005633, intron 20 of 22) intron (NM_005633, intron 20 of 22) -29520 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 116.25-22 chr14 66822366 66822825 + 0.5 NA intron (NM_001024218, intron 3 of 21) L2c|LINE|L2 315188 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 141.5-60 chr2 102158481 102158925 + 0.5 NA intron (NM_001320978, intron 3 of 11) L2a|LINE|L2 4762 NM_001320985 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 142-40 chr3 9202726 9203123 + 0.5 NA intron (NM_014850, intron 1 of 21) LTR16|LTR|ERVL 10431 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 118.5-34 chr13 54142395 54142804 + 0.5 NA Intergenic Intergenic -9728 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 119.25-94 chr8 49952600 49953051 + 0.5 NA intron (NR_135798, intron 1 of 15) L2c|LINE|L2 41418 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 151.75-38 chr19 29171370 29171829 + 0.5 NA Intergenic L1MEb|LINE|L1 41552 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 153.75-39 chr2 54734503 54734940 + 0.5 NA intron (NM_001039753, intron 1 of 40) MamRep38|DNA|hAT 9709 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 139.25-32 chr15 27784043 27784437 + 0.5 NA intron (NM_001300984, intron 22 of 22) L1MCc|LINE|L1 315075 NM_000275 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 127-54 chr20 31060048 31060347 + 0.5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -197467 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 113-46 chr2 56355873 56356248 + 0.5 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -170290 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 164-6 chr10 69265206 69265731 + 0.5 NA intron (NM_025130, intron 16 of 17) intron (NM_025130, intron 16 of 17) -4532 NM_033500 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 132-44 chr20 10242431 10242732 + 0.5 NA intron (NM_001322906, intron 2 of 8) intron (NM_001322906, intron 2 of 8) -23075 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 116.75-82 chr8 90557810 90558131 + 0.5 NA Intergenic Intergenic 48093 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 114-7 chr1 204423275 204423616 + 0.5 NA 3' UTR (NM_002646, exon 34 of 34) 3' UTR (NM_002646, exon 34 of 34) -11628 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 115.5-10 chr10 90945097 90945421 + 0.5 NA Intergenic MER2|DNA|TcMar-Tigger -2041 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 113.75-110 chr8 100662603 100662999 + 0.5 NA Intergenic Intergenic -13136 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 151-6 chr11 84070233 84070732 + 0.5 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 202798 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150.25-15 chr12 16707046 16707479 + 0.5 NA Intergenic L1PA2|LINE|L1 -99048 NM_001243609 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 141-48 chr20 50723705 50724187 + 0.5 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -7634 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 124-44 chr4 91845626 91846072 + 0.5 NA Intergenic Intergenic 431453 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 114.75-108 chr8 140724293 140724725 + 0.5 NA intron (NM_001352718, intron 22 of 32) intron (NM_001352718, intron 22 of 32) -5940 NM_001352749 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 212-19 chr17 54211341 54211880 + 0.5 NA Intergenic Intergenic 388683 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 119.25-20 chr12 79338402 79338656 + 0.5 NA intron (NM_001291901, intron 7 of 9) AluJo|SINE|Alu -80728 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 123-39 chr4 13362719 13363102 + 0.5 NA Intergenic Intergenic 121430 NM_001017979 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 119-21 chr13 94565647 94566097 + 0.5 NA Intergenic Intergenic -16466 NM_001322184 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 126.25-29 chr14 53609428 53609878 + 0.5 NA Intergenic L2a|LINE|L2 338831 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 120-44 chr2 29739666 29740022 + 0.5 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 181742 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 116.5-14 chr10 93001051 93001467 + 0.5 NA intron (NM_001319195, intron 19 of 21) intron (NM_001319195, intron 19 of 21) -59539 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 140.5-105 chr7 47756632 47757017 + 0.5 NA Intergenic Intergenic -4652 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 128.25-40 chr22 30710519 30710943 + 0.5 NA intron (NM_030758, intron 1 of 13) AluSx|SINE|Alu 15857 NM_001282739 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 121.25-79 chr8 71143701 71144105 + 0.5 NA Intergenic Intergenic 212803 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 145.25-7 chr1 173334048 173334464 + 0.5 NA intron (NR_037845, intron 2 of 2) ERVL-B4-int|LTR|ERVL -126925 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 152-45 chr3 120189211 120189598 + 0.5 NA intron (NM_001168271, intron 4 of 8) L1ME1|LINE|L1 54891 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 156.25-16 chr12 121136950 121137358 + 0.5 NA intron (NR_033953, intron 1 of 10) MamRep137|DNA|TcMar-Tigger 4278 NR_033955 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 133.25-82 chr8 100909389 100909799 + 0.5 NA Intergenic MLT1J|LTR|ERVL-MaLR 40977 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 142.25-24 chr14 77155932 77156335 + 0.5 NA Intergenic AluSq2|SINE|Alu -14342 NM_174976 283576 Hs.525485 NM_174976 ENSG00000177108 ZDHHC22 C14orf59 zinc finger DHHC-type containing 22 protein-coding 114.75-109 chr9 79335968 79336215 + 0.5 NA Intergenic L1PA15-16|LINE|L1 -190425 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 131-48 chr4 144281548 144281901 + 0.5 NA Intergenic Intergenic -141006 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 138.5-25 chr12 118331086 118331431 + 0.5 NA intron (NM_001346490, intron 1 of 21) MIRb|SINE|MIR 28447 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 124.75-36 chr17 59625585 59625999 + 0.5 NA intron (NM_001288653, intron 1 of 31) MER33|DNA|hAT-Charlie 5897 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 125-70 chr4 26741933 26742286 + 0.5 NA intron (NM_001292054, intron 14 of 17) intron (NM_001292054, intron 14 of 17) 118135 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 140-34 chr2 85726507 85727001 + 0.5 NA Intergenic AluSq2|SINE|Alu -27237 NM_032827 84913 Hs.135569 NM_032827 ENSG00000168874 ATOH8 HATH6|bHLHa21 atonal bHLH transcription factor 8 protein-coding 156.5-17 chr12 132049868 132050365 + 0.5 NA intron (NM_015409, intron 39 of 52) intron (NM_015409, intron 39 of 52) 18892 NR_002979 677829 Hs.742405 NR_002979 ENSG00000208892 SNORA49 ACA49 small nucleolar RNA, H/ACA box 49 snoRNA 119.75-62 chr4 59825330 59825673 + 0.5 NA Intergenic MIR|SINE|MIR 811928 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 145.5-57 chr20 61507197 61507572 + 0.5 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) 7963 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 135.75-72 chr4 92017098 92017569 + 0.5 NA Intergenic L1MC2|LINE|L1 259969 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 114-90 chr8 120614241 120614618 + 0.5 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -146824 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 140-5 chr10 34012805 34013109 + 0.5 NA Intergenic Intergenic -240277 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 133.25-50 chr2 228632436 228632931 + 0.5 NA Intergenic L3|LINE|CR1 -21288 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 146.75-29 chr3 121230949 121231371 + 0.5 NA intron (NR_145516, intron 12 of 28) intron (NR_145516, intron 12 of 28) 181520 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 118.25-85 chr5 151056677 151057025 + 0.5 NA exon (NM_001258455, exon 5 of 16) exon (NM_001258455, exon 5 of 16) 8280 NM_001258455 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 134.75-44 chr21 24727492 24727946 + 0.5 NA Intergenic LTR16C|LTR|ERVL -112831 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 120.75-17 chr11 100059649 100059998 + 0.5 NA intron (NM_001243270, intron 8 of 23) L1ME4b|LINE|L1 503678 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 135.25-3 chr1 199570977 199571405 + 0.5 NA Intergenic MER4B|LTR|ERV1 422593 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 151.25-31 chr2 75241763 75242275 + 0.5 NA Intergenic L1P4a|LINE|L1 -42499 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 113.75-68 chr22 38528033 38528443 + 0.5 NA intron (NM_001363017, intron 10 of 11) AluSz|SINE|Alu -21927 NM_006386 10521 Hs.528305 NM_006386 ENSG00000100201 DDX17 P72|RH70 DEAD-box helicase 17 protein-coding 142-63 chr7 52813014 52813557 + 0.5 NA Intergenic L1MB8|LINE|L1 -222348 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 144.75-65 chr4 106196697 106197186 + 0.5 NA intron (NM_001290768, intron 21 of 26) intron (NM_001290768, intron 21 of 26) -118669 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 114.25-69 chr22 28050713 28051153 + 0.5 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -130321 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 170.25-63 chr8 86229814 86230302 + 0.5 NA exon (NM_138817, exon 1 of 4) exon (NM_138817, exon 1 of 4) 323 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 157.5-23 chr14 23209286 23209631 + 0.5 NA intron (NM_001370218, intron 2 of 15) L1MD3|LINE|L1 24137 NM_001370218 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 145.25-17 chr11 20565693 20565991 + 0.5 NA Intergenic Intergenic -33558 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 123.5-29 chr13 62820477 62820794 + 0.5 NA Intergenic Intergenic -13276 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 116.75-7 chr10 35005626 35006048 + 0.5 NA Intergenic L1ME3F|LINE|L1 68446 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 156.25-7 chr10 63012648 63012986 + 0.5 NA Intergenic L2c|LINE|L2 -120430 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 113-62 chr3 116975305 116975695 + 0.5 NA Intergenic Intergenic 54069 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 113.75-25 chr11 13819182 13819629 + 0.5 NA intron (NR_149108, intron 3 of 3) intron (NR_149108, intron 3 of 3) 35019 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 148.5-96 chr6 165639963 165640315 + 0.5 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 21961 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 132-21 chr14 71249962 71250274 + 0.5 NA Intergenic Intergenic -70358 NM_001354288 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 198.75-19 chr19 58028345 58028884 + 0.5 NA Intergenic Intergenic -5411 NM_182572 284312 Hs.643437 NM_182572 ENSG00000152467 ZSCAN1 MZF-1|ZNF915 zinc finger and SCAN domain containing 1 protein-coding 163.5-15 chr11 56677808 56678206 + 0.5 NA Intergenic L1MA7|LINE|L1 14321 NM_001004730 219493 Hs.553633 NM_001004730 ENSG00000172459 OR5AR1 OR11-209 olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene) protein-coding 112.75-49 chr2 84084276 84084564 + 0.5 NA Intergenic Intergenic -206262 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 120.75-24 chr12 46768461 46768854 + 0.5 NA intron (NM_018018, intron 15 of 16) intron (NM_018018, intron 15 of 16) 57340 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 120.25-15 chr11 22657813 22658202 + 0.5 NA Intergenic Intergenic -8604 NM_001351224 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 145.75-7 chr13 53487963 53488336 + 0.5 NA Intergenic Intergenic -327270 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 117-56 chr3 95521465 95521786 + 0.5 NA Intergenic Intergenic 161568 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 121.75-40 chr2 102167939 102168274 + 0.5 NA intron (NM_001320978, intron 6 of 11) intron (NM_001320978, intron 6 of 11) 14165 NM_001320985 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 125.75-8 chr1 195629826 195630162 + 0.5 NA Intergenic Intergenic 458721 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 123.75-34 chr13 47188006 47188492 + 0.5 NA Intergenic Intergenic -291173 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 128-64 chr8 85885739 85886184 + 0.5 NA Intergenic Intergenic -58019 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 123.25-47 chr2 177269379 177269625 + 0.5 NA Intergenic AluJr|SINE|Alu -4371 NM_001313903 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|IMDDHH|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 128-6 chr10 87935435 87935913 + 0.5 NA intron (NM_001304717, intron 6 of 9) Charlie24|DNA|hAT-Charlie 72049 NM_000314 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 148.5-17 chr12 1166003 1166506 + 0.5 NA intron (NR_027948, intron 7 of 19) THE1B|LTR|ERVL-MaLR 138506 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 139-36 chr2 138552753 138553222 + 0.5 NA intron (NM_001001664, intron 5 of 10) intron (NM_001001664, intron 5 of 10) 51217 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 129.25-66 chr6 76072405 76072791 + 0.5 NA promoter-TSS (NM_001282368) promoter-TSS (NM_001282368) 64 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding